Citrus Sinensis ID: 000711
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1338 | 2.2.26 [Sep-21-2011] | |||||||
| Q94FB9 | 1337 | ABC transporter D family | yes | no | 0.993 | 0.994 | 0.794 | 0.0 | |
| P55096 | 659 | ATP-binding cassette sub- | yes | no | 0.426 | 0.864 | 0.344 | 7e-94 | |
| P16970 | 659 | ATP-binding cassette sub- | yes | no | 0.426 | 0.864 | 0.342 | 1e-93 | |
| P28288 | 659 | ATP-binding cassette sub- | yes | no | 0.426 | 0.864 | 0.340 | 3e-93 | |
| Q9UBJ2 | 740 | ATP-binding cassette sub- | no | no | 0.424 | 0.767 | 0.305 | 4e-89 | |
| Q9QY44 | 741 | ATP-binding cassette sub- | no | no | 0.448 | 0.809 | 0.303 | 8e-88 | |
| Q61285 | 741 | ATP-binding cassette sub- | no | no | 0.438 | 0.792 | 0.301 | 1e-86 | |
| Q8T8P3 | 741 | ABC transporter D family | yes | no | 0.387 | 0.699 | 0.324 | 7e-85 | |
| P33897 | 745 | ATP-binding cassette sub- | no | no | 0.402 | 0.723 | 0.324 | 2e-84 | |
| P48410 | 736 | ATP-binding cassette sub- | no | no | 0.434 | 0.789 | 0.305 | 9e-84 |
| >sp|Q94FB9|AB1D_ARATH ABC transporter D family member 1 OS=Arabidopsis thaliana GN=ABCC1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 2180 bits (5650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1064/1339 (79%), Positives = 1187/1339 (88%), Gaps = 10/1339 (0%)
Query: 1 MPSLQSLPLTEHGRGILSSRRKTILLASGILVAGGTAAYLKSRFSSKKPDAFGHYNGLGD 60
MPSLQ L LTE GRG+++SRRK+ILLA+GI+ AGGTA YLKSR +S++PD+ NG D
Sbjct: 1 MPSLQLLQLTERGRGLVASRRKSILLAAGIVAAGGTAVYLKSRVASRRPDSSRLCNGQSD 60
Query: 61 SERKPDKAVANRSN--IKKANQKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRT 118
+ +K A N I +K GGLKSLQVL AILLS+MGKMGARDLLALV VV RT
Sbjct: 61 DDETLEKLTATDQNAKITTKKKKGGGLKSLQVLTAILLSQMGKMGARDLLALVATVVFRT 120
Query: 119 ALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKI 178
ALSNRLAKVQGFLFRAAFLRR PLF +LISENI+LCF+LST+HSTSKYITG LSL+FRKI
Sbjct: 121 ALSNRLAKVQGFLFRAAFLRRAPLFLRLISENIMLCFMLSTLHSTSKYITGALSLRFRKI 180
Query: 179 VTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLY 238
+TK+IH+ YFENM YYKISHVDGRITHPEQR+ASDVPRF SELS+L+ DDLTAVTDG+LY
Sbjct: 181 LTKIIHSHYFENMVYYKISHVDGRITHPEQRIASDVPRFSSELSDLILDDLTAVTDGILY 240
Query: 239 TWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAE 298
WRLCSYASPKY+FWILAYVLGAGT +RNFSP+FGKLMSKEQQLEGEYRQLHSRLRTH+E
Sbjct: 241 AWRLCSYASPKYIFWILAYVLGAGTAIRNFSPSFGKLMSKEQQLEGEYRQLHSRLRTHSE 300
Query: 299 SIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPF 358
SIAFYGGE +EESHIQQKFK L HM VLHDHWWFGMIQDFLLKYLGATVAVILIIEPF
Sbjct: 301 SIAFYGGETREESHIQQKFKNLVSHMSHVLHDHWWFGMIQDFLLKYLGATVAVILIIEPF 360
Query: 359 FAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMV 418
F+G+L+PD STLGRA+MLSN+RYHTSVIISLFQ+LGTLSISSRRLNRLSGYADRIHELM
Sbjct: 361 FSGHLRPDDSTLGRAEMLSNIRYHTSVIISLFQALGTLSISSRRLNRLSGYADRIHELMA 420
Query: 419 ISRELSIEDKSP-QRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLIT 477
+SRELS +DKS QRN SRNY SEANY+EFS VKVVTPTGNVLVE+LTL+VE GSNLLIT
Sbjct: 421 VSRELSGDDKSSFQRNRSRNYLSEANYVEFSDVKVVTPTGNVLVEDLTLRVEQGSNLLIT 480
Query: 478 GPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPL 537
GPNGSGKSSLFRVLGGLWPLVSGHI KPGVGSDLNKEIFYVPQRPY AVGTLRDQLIYPL
Sbjct: 481 GPNGSGKSSLFRVLGGLWPLVSGHIVKPGVGSDLNKEIFYVPQRPYMAVGTLRDQLIYPL 540
Query: 538 TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597
TS QE E LT GMVELLKNVDLEYLLDRY PEKE+NWGDELSLGEQQRLGMARLFYHKP
Sbjct: 541 TSGQESELLTEIGMVELLKNVDLEYLLDRYQPEKEVNWGDELSLGEQQRLGMARLFYHKP 600
Query: 598 KFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHD 657
KFAILDECTSAVTTDMEERF AKVRAMGTSCITISHRPALVAFHDVVLSLDGEG W VH
Sbjct: 601 KFAILDECTSAVTTDMEERFAAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHY 660
Query: 658 KRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASP 717
KRD S+++T + I+ +KSS+TDRQ+DAM V++AF A+K+SA +N KAQSY +++IA SP
Sbjct: 661 KRDDSALLTDAEIDSVKSSDTDRQNDAMVVQRAFAAARKESA-TNSKAQSYQTQLIARSP 719
Query: 718 IADHNVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDR 777
+ D +V LP FPQ +++ R LP RVA M VL+PT+FDKQGAQLLAVA LVVSRT ISDR
Sbjct: 720 VVDKSVVLPRFPQPQTSQRALPSRVAAMLNVLIPTIFDKQGAQLLAVACLVVSRTLISDR 779
Query: 778 IASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHL 837
IASLNGTTVKYVLEQDKA+FVRLIG+SVLQS ASS IAPS+RHLT RLALGWRIR+TQHL
Sbjct: 780 IASLNGTTVKYVLEQDKAAFVRLIGLSVLQSGASSIIAPSLRHLTQRLALGWRIRLTQHL 839
Query: 838 LKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMK 897
L++YLR N+FYKVF+MS SIDADQR+T DLEKLT DLSGL+TGMVKPSVDILWFTWRMK
Sbjct: 840 LRNYLRNNAFYKVFHMSGNSIDADQRLTRDLEKLTADLSGLLTGMVKPSVDILWFTWRMK 899
Query: 898 ALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFF 957
LTGQRGVAILY YMLLGLGFLR V P+FGDL EQQLEG FRFMHERL HAES+AFF
Sbjct: 900 LLTGQRGVAILYTYMLLGLGFLRRVAPDFGDLAGEEQQLEGKFRFMHERLNTHAESIAFF 959
Query: 958 GGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKG 1017
GGGAREKAM++ +FR LL+HSL+LL+KKWL+GILDDFVTKQLP+NVTWGLSLLYA+EHKG
Sbjct: 960 GGGAREKAMVDKKFRALLDHSLMLLRKKWLYGILDDFVTKQLPNNVTWGLSLLYALEHKG 1019
Query: 1018 DRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQ 1077
DRALVSTQGELAHALR+LASVVSQSF+AFGDILELH+KF+ELSGGINRIFEL+E LDA+Q
Sbjct: 1020 DRALVSTQGELAHALRYLASVVSQSFMAFGDILELHKKFLELSGGINRIFELDEFLDASQ 1079
Query: 1078 PGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGS 1137
G +S+++ + D QD +SFS++DIITP+QKL+A +L+ EIV GKSLLVTGPNGS
Sbjct: 1080 SG-----VTSENQTSRLDSQDLLSFSEVDIITPAQKLMASKLSCEIVSGKSLLVTGPNGS 1134
Query: 1138 GKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLS 1197
GK+SVFRVLR +WP V G LTKPS I +E GSG G+F+VPQRPYTCLGTLRDQIIYPLS
Sbjct: 1135 GKTSVFRVLRDIWPTVCGRLTKPSLDI-KELGSGNGMFFVPQRPYTCLGTLRDQIIYPLS 1193
Query: 1198 REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 1257
+EEAE RA KL+ GE + +ILDS+LKTILE VRL YLLER+ GWDA NWEDILS
Sbjct: 1194 KEEAEKRAAKLYTSGESSTEAGSILDSHLKTILENVRLVYLLERDVGGWDATTNWEDILS 1253
Query: 1258 LGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPF 1317
LGEQQRLGMARLFFH+PKFG+LDECTNATSVDVEEQLYR+A+DMG+TF+TSSQRPALIPF
Sbjct: 1254 LGEQQRLGMARLFFHRPKFGVLDECTNATSVDVEEQLYRVARDMGVTFITSSQRPALIPF 1313
Query: 1318 HSLELRLIDGEGNWELRTI 1336
HSLELRLIDGEGNWELR+I
Sbjct: 1314 HSLELRLIDGEGNWELRSI 1332
|
Contributes to the transport of fatty acids and their derivatives (acyl CoAs) across the peroxisomal membrane. Provides acetate to the glyoxylate cycle in developing seedlings. Involved in pollen tube elongation, ovule fertilization, and seeds germination after imbibition (controls the switch between the opposing developmental programs of dormancy and germination), probably by promoting beta-oxidation of storage lipids during gluconeogenesis. Required for biosynthesis of jasmonic acid and conversion of indole butyric acid to indole acetic acid. Confers sensitivity to monofluoroacetic acid (FAc), a toxic acetate analog, and to 2,4-dichlorophenoxybutyric acid (2,4-DB) and indole-3-butyric acid (IBA), two precursors of auxin after beta-oxidation. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 4EC: 7 |
| >sp|P55096|ABCD3_MOUSE ATP-binding cassette sub-family D member 3 OS=Mus musculus GN=Abcd3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 346 bits (888), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 211/613 (34%), Positives = 333/613 (54%), Gaps = 43/613 (7%)
Query: 741 RVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKY-VLEQDKASFVR 799
R++ + K++VP F K+ LL +A ++VSRT+ D NGT ++ ++ + F R
Sbjct: 66 RLSQILKIMVPRTFCKETGYLLLIAVMLVSRTY-CDVWMIQNGTLIESGIIGRSSKDFKR 124
Query: 800 LIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSID 859
+ + S + +++ L L +R+R+T++L + YL+ ++YK+ N+ ++ +
Sbjct: 125 YLFNFIAAMPLISLVNNFLKYGLNELKLCFRVRLTRYLYEEYLQAFTYYKMGNLDNRIAN 184
Query: 860 ADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFL 919
DQ +T D+EK + L + + KP +DI+ + +++ + G +G A + AY+L+ FL
Sbjct: 185 PDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIGAQGPASMMAYLLVSGLFL 244
Query: 920 RSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSL 979
+ G +T EQ+ EG +R+++ RL ++E +AF+ G REK I S FR+L+EH
Sbjct: 245 TRLRRPIGKMTIMEQKYEGEYRYVNSRLITNSEEIAFYNGNKREKQTIHSVFRKLVEHLH 304
Query: 980 LLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVV 1039
+ ++ G +D + K + V + + ++ R L ST EL ++
Sbjct: 305 NFIFFRFSMGFIDSIIAKYVATVVGYLVVSRPFLDLAHPRHLHSTHSELLEDYYQSGRML 364
Query: 1040 SQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDS 1099
+ A G I+ R+ L+G RI EL ++L G E + SQ + Q S
Sbjct: 365 LRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNHGRYERTMVSQQEKGIEGAQAS 424
Query: 1100 ---------------ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFR 1144
I F + + TP+ +L + L+FE+ G ++L+ GPNG GKSS+FR
Sbjct: 425 PLVPGAGEIINTDNIIKFDHVPLATPNGDILIQDLSFEVRSGANVLICGPNGCGKSSLFR 484
Query: 1145 VLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELR 1204
VL LWP+ G LTKP E G +FYVPQRPY LGTLRDQ+IYP +E+ + R
Sbjct: 485 VLGELWPLFGGRLTKP------ERGK---LFYVPQRPYMTLGTLRDQVIYPDGKEDQKKR 535
Query: 1205 ALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRL 1264
I D LK L+ V+L ++LERE GWD+ +W D+LS GE+QR+
Sbjct: 536 G---------------ISDQVLKEYLDNVQLGHILEREG-GWDSVQDWMDVLSGGEKQRM 579
Query: 1265 GMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRL 1324
MARLF+HKP+F ILDECT+A SVDVE+ +Y + +GIT T S R +L H L +
Sbjct: 580 AMARLFYHKPQFAILDECTSAVSVDVEDYIYSHCRKVGITLFTVSHRKSLWKHHEYYLHM 639
Query: 1325 IDGEGNWELRTIS 1337
DG GN+E + I+
Sbjct: 640 -DGRGNYEFKKIT 651
|
Mus musculus (taxid: 10090) |
| >sp|P16970|ABCD3_RAT ATP-binding cassette sub-family D member 3 OS=Rattus norvegicus GN=Abcd3 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 345 bits (886), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 210/613 (34%), Positives = 332/613 (54%), Gaps = 43/613 (7%)
Query: 741 RVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKY-VLEQDKASFVR 799
R++ + K++VP F K+ L+ +A ++VSRT+ D NGT ++ ++ + F R
Sbjct: 66 RLSQILKIMVPRTFCKETGYLILIAVMLVSRTY-CDVWMIQNGTLIESGIIGRSSKDFKR 124
Query: 800 LIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSID 859
+ + S + +++ L L +R+R+T++L + YL+ ++YK+ N+ ++ +
Sbjct: 125 YLFNFIAAMPLISLVNNFLKYGLNELKLCFRVRLTRYLYEEYLQAFTYYKMGNLDNRIAN 184
Query: 860 ADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFL 919
DQ +T D+EK + L + + KP +DI+ + +++ + G +G A + AY+L+ FL
Sbjct: 185 PDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIGAQGPASMMAYLLVSGLFL 244
Query: 920 RSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSL 979
+ G +T EQ+ EG +RF++ RL ++E +AF+ G REK I S FR+L+EH
Sbjct: 245 TRLRRPIGKMTIMEQKYEGEYRFVNSRLITNSEEIAFYNGNKREKQTIHSVFRKLVEHLH 304
Query: 980 LLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVV 1039
+ ++ G +D + K + V + + ++ R L ST EL ++
Sbjct: 305 NFIFFRFSMGFIDSIIAKYIATVVGYLVVSRPFLDLAHPRHLHSTHSELLEDYYQSGRML 364
Query: 1040 SQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDS 1099
+ A G I+ R+ L+G RI EL ++L G E + SQ Q S
Sbjct: 365 LRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNHGKYERTMVSQQDKGIEGAQAS 424
Query: 1100 ---------------ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFR 1144
I F + + TP+ +L + L+FE+ G ++L+ GPNG GKSS+FR
Sbjct: 425 PLIPGAGEIINADNIIKFDHVPLATPNGDILIQDLSFEVRSGANVLICGPNGCGKSSLFR 484
Query: 1145 VLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELR 1204
VL LWP+ G LTKP E G +FYVPQRPY LGTLRDQ+IYP +E+ + +
Sbjct: 485 VLGELWPLFGGHLTKP------ERGK---LFYVPQRPYMTLGTLRDQVIYPDGKEDQKKK 535
Query: 1205 ALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRL 1264
I D LK L+ V+L ++LERE GWD+ +W D+LS GE+QR+
Sbjct: 536 G---------------ISDQVLKGYLDNVQLGHILEREG-GWDSVQDWMDVLSGGEKQRM 579
Query: 1265 GMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRL 1324
MARLF+HKP+F ILDECT+A SVDVE+ +Y + +GIT T S R +L H L +
Sbjct: 580 AMARLFYHKPQFAILDECTSAVSVDVEDYIYSHCRKVGITLFTVSHRKSLWKHHEYYLHM 639
Query: 1325 IDGEGNWELRTIS 1337
DG GN+E + I+
Sbjct: 640 -DGRGNYEFKKIT 651
|
Rattus norvegicus (taxid: 10116) |
| >sp|P28288|ABCD3_HUMAN ATP-binding cassette sub-family D member 3 OS=Homo sapiens GN=ABCD3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 344 bits (882), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 209/613 (34%), Positives = 331/613 (53%), Gaps = 43/613 (7%)
Query: 741 RVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKY-VLEQDKASFVR 799
R+ + K++VP F K+ L+ +A ++VSRT+ D NGT ++ ++ + + F R
Sbjct: 66 RLIQILKIMVPRTFCKETGYLVLIAVMLVSRTY-CDVWMIQNGTLIESGIIGRSRKDFKR 124
Query: 800 LIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSID 859
+ + S + +++ L L +R+R+T++L + YL+ ++YK+ N+ ++ +
Sbjct: 125 YLLNFIAAMPLISLVNNFLKYGLNELKLCFRVRLTKYLYEEYLQAFTYYKMGNLDNRIAN 184
Query: 860 ADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFL 919
DQ +T D+EK + L + + KP +DI+ + +++ + G +G A + AY+++ FL
Sbjct: 185 PDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIGAQGPASMMAYLVVSGLFL 244
Query: 920 RSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSL 979
+ G +T EQ+ EG +R+++ RL ++E +AF+ G REK + S FR+L+EH
Sbjct: 245 TRLRRPIGKMTITEQKYEGEYRYVNSRLITNSEEIAFYNGNKREKQTVHSVFRKLVEHLH 304
Query: 980 LLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVV 1039
+ ++ G +D + K L V + + ++ R L ST EL ++
Sbjct: 305 NFILFRFSMGFIDSIIAKYLATVVGYLVVSRPFLDLSHPRHLKSTHSELLEDYYQSGRML 364
Query: 1040 SQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQ-- 1097
+ A G I+ R+ L+G RI EL ++L G E + SQ + Q
Sbjct: 365 LRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNHGKYERTMVSQQEKGIEGVQVI 424
Query: 1098 -------------DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFR 1144
+ I F + + TP+ +L R L FE+ G ++L+ GPNG GKSS+FR
Sbjct: 425 PLIPGAGEIIIADNIIKFDHVPLATPNGDVLIRDLNFEVRSGANVLICGPNGCGKSSLFR 484
Query: 1145 VLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELR 1204
VL LWP+ G LTKP E G +FYVPQRPY LGTLRDQ+IYP RE+ + +
Sbjct: 485 VLGELWPLFGGRLTKP------ERGK---LFYVPQRPYMTLGTLRDQVIYPDGREDQKRK 535
Query: 1205 ALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRL 1264
I D LK L+ V+L ++LERE GWD+ +W D+LS GE+QR+
Sbjct: 536 G---------------ISDLVLKEYLDNVQLGHILEREG-GWDSVQDWMDVLSGGEKQRM 579
Query: 1265 GMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRL 1324
MARLF+HKP+F ILDECT+A SVDVE +Y + +GIT T S R +L H L +
Sbjct: 580 AMARLFYHKPQFAILDECTSAVSVDVEGYIYSHCRKVGITLFTVSHRKSLWKHHEYYLHM 639
Query: 1325 IDGEGNWELRTIS 1337
DG GN+E + I+
Sbjct: 640 -DGRGNYEFKQIT 651
|
Probable transporter. The nucleotide-binding fold acts as an ATP-binding subunit with ATPase activity. Homo sapiens (taxid: 9606) |
| >sp|Q9UBJ2|ABCD2_HUMAN ATP-binding cassette sub-family D member 2 OS=Homo sapiens GN=ABCD2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 330 bits (846), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 192/628 (30%), Positives = 338/628 (53%), Gaps = 60/628 (9%)
Query: 744 DMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGV 803
++ K+L P + + L + ++SRT++S +A L+G VK ++E+ +F+ +
Sbjct: 90 ELRKILFPKLVTTETGWLCLHSVALISRTFLSIYVAGLDGKIVKSIVEKKPRTFIIKLIK 149
Query: 804 SVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQR 863
++ + ++F+ +IR+L +LAL +R R+ H ++Y ++YKV NM + + DQ
Sbjct: 150 WLMIAIPATFVNSAIRYLECKLALAFRTRLVDHAYETYFTNQTYYKVINMDGRLANPDQS 209
Query: 864 ITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGL------G 917
+T D+ + ++ L + + KP +D++ ++ + RG + + +L GL
Sbjct: 210 LTEDIMMFSQSVAHLYSNLTKPILDVMLTSYTLIQTATSRGASPIGPTLLAGLVVYATAK 269
Query: 918 FLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEH 977
L++ +P+FG L + E +G R++H R+ A+ E +AF+ G E ++ ++ L +
Sbjct: 270 VLKACSPKFGKLVAEEAHRKGYLRYVHSRIIANVEEIAFYRGHKVEMKQLQKSYKALADQ 329
Query: 978 SLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLAS 1037
L+L K+ + +++ F+ K + + + + + G Q ++ + R A
Sbjct: 330 MNLILSKRLWYIMIEQFLMKYVWSSSGLIMVAIPIITATGFADGEDGQKQVMVSERTEAF 389
Query: 1038 VVSQSFLAFGD-----ILELHRKFVELSGGINRIFELEELLDAAQPGDDE----ISGSSQ 1088
+++ LA G I+ +++ EL+G R++ + + D + G + I S
Sbjct: 390 TTARNLLASGADAIERIMSSYKEVTELAGYTARVYNMFWVFDEVKRGIYKRTAVIQESES 449
Query: 1089 HKWNST-----------------DYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLV 1131
H N D I + IITP+ +++A +L F++ G LL+
Sbjct: 450 HSKNGAKVELPLSDTLAIKGKVIDVDHGIICENVPIITPAGEVVASRLNFKVEEGMHLLI 509
Query: 1132 TGPNGSGKSSVFRVLRGLWPVVSGSLTKPS-QHIDEEAGSGCGIFYVPQRPYTCLGTLRD 1190
TGPNG GKSS+FR+L GLWPV G L KP QH+ FY+PQRPY LG+LRD
Sbjct: 510 TGPNGCGKSSLFRILSGLWPVYEGVLYKPPPQHM----------FYIPQRPYMSLGSLRD 559
Query: 1191 QIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 1250
Q+IYP S ++ +H KG D L+ IL V L ++++RE GWDA +
Sbjct: 560 QVIYPDSVDD-------MHDKG--------YTDQDLERILHNVHLYHIVQREG-GWDAVM 603
Query: 1251 NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQ 1310
+W+D+LS GE+QR+GMAR+F+HKPK+ +LDECT+A S+DVE ++++ AK GI+ ++ +
Sbjct: 604 DWKDVLSGGEKQRMGMARMFYHKPKYALLDECTSAVSIDVEGKIFQAAKGAGISLLSITH 663
Query: 1311 RPALIPFHSLELRLIDGEGNWELRTISS 1338
RP+L +H+ L+ DGEG W + +
Sbjct: 664 RPSLWKYHTHLLQF-DGEGGWRFEQLDT 690
|
Probable transporter. Homo sapiens (taxid: 9606) |
| >sp|Q9QY44|ABCD2_RAT ATP-binding cassette sub-family D member 2 OS=Rattus norvegicus GN=Abcd2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 326 bits (835), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 208/686 (30%), Positives = 355/686 (51%), Gaps = 86/686 (12%)
Query: 695 KKDSAFSNPKAQS----YVSEVIAASPIADHNVPLPVFPQLKSAPRILPLRVADMFKVLV 750
+K A P A++ + +E+I P N F QL L LR K+L
Sbjct: 50 RKAKAEDYPPAENRERLHCTEIICKKPAPGLNADF--FKQL------LELR-----KILF 96
Query: 751 PTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAA 810
P + + L + ++SRT++S +A L+G VK ++E+ +F+ + ++ +
Sbjct: 97 PKLVTTETGWLCLHSVALISRTFLSIYVAGLDGKIVKSIVEKKPRTFIIKLVKWLMIAVP 156
Query: 811 SSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEK 870
++F+ +IR+L +LAL +R R+ H ++Y ++YKV NM + + DQ +T D+
Sbjct: 157 ATFVNSAIRYLECKLALAFRTRLVDHAYETYFANQTYYKVINMDGRLANPDQSLTEDIMM 216
Query: 871 LTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGL------GFLRSVTP 924
+ ++ L + + KP +D++ ++ + RG + + +L GL L++ +P
Sbjct: 217 FSQSVAHLYSNLTKPILDVILTSYTLIRTATSRGASPIGPTLLAGLVVYATAKVLKACSP 276
Query: 925 EFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKK 984
+FG L + E +G R++H R+ A+ E +AF+ G E ++ ++ L L+L K
Sbjct: 277 KFGTLVAEEAHRKGYLRYVHSRIIANVEEIAFYRGHKVEMKQLQKCYKALAYQMNLILSK 336
Query: 985 KWLFGILDDFVTKQLPHN---VTWGLSLLYA-------MEHKGDRALVSTQGE-LAHALR 1033
+ + +++ F+ K + + + ++ A +E +A+VS + E A
Sbjct: 337 RLWYIMIEQFLMKYVWSGCGLIMVAIPIITATGFADGDLEDGPKQAMVSDRTEAFTTARN 396
Query: 1034 FLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLD-----------AAQPGDDE 1082
LAS A I+ +++ EL+G R++ + + D +P ++
Sbjct: 397 LLASGAD----AIERIMSSYKEITELAGYTARVYNMFWVFDEVKRGIYKRTVTQEPENNS 452
Query: 1083 ISGSSQH---------KWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTG 1133
SG K D I + IITP+ +++A L F++ G LL+TG
Sbjct: 453 KSGGGLELPLSDTLAIKGTVIDVDHGILCENVPIITPAGEVVASSLNFKVEEGMHLLITG 512
Query: 1134 PNGSGKSSVFRVLRGLWPVVSGSLTKPS-QHIDEEAGSGCGIFYVPQRPYTCLGTLRDQI 1192
PNG GKSS+FR+L GLWPV G L KP QH+ FY+PQRPY LG+LRDQ+
Sbjct: 513 PNGCGKSSLFRILSGLWPVYEGVLYKPPPQHM----------FYIPQRPYMSLGSLRDQV 562
Query: 1193 IYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNW 1252
IYP S ++ +H KG D L+ IL V L ++++RE GWDA ++W
Sbjct: 563 IYPDSVDD-------MHEKG--------YTDRDLEHILHSVHLYHIVQREG-GWDAVMDW 606
Query: 1253 EDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRP 1312
+D+LS GE+QR+GMAR+F+HKPK+ +LDECT+A S+DVE ++++ A GI+ ++ + RP
Sbjct: 607 KDVLSGGEKQRMGMARMFYHKPKYALLDECTSAVSIDVEGKIFQAAIGAGISLLSITHRP 666
Query: 1313 ALIPFHSLELRLIDGEGNWELRTISS 1338
+L +H+ L+ DGEG W + +
Sbjct: 667 SLWKYHTHLLQF-DGEGGWRFEQLDT 691
|
Probable transporter. Rattus norvegicus (taxid: 10116) |
| >sp|Q61285|ABCD2_MOUSE ATP-binding cassette sub-family D member 2 OS=Mus musculus GN=Abcd2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 322 bits (825), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 202/669 (30%), Positives = 349/669 (52%), Gaps = 82/669 (12%)
Query: 708 YVSEVIAASPIADHNVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFL 767
+ +E+I P N F QL L LR K+L P + + L +
Sbjct: 67 HCTEIICKKPAPGLNAAF--FKQL------LELR-----KILFPKLVTTETGWLCLHSVA 113
Query: 768 VVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLAL 827
++SRT++S +A L+G VK ++E+ +F+ + ++ + ++F+ +IR+L +LAL
Sbjct: 114 LISRTFLSIYVAGLDGKIVKSIVEKKPRTFIIKLIKWLMIAIPATFVNSAIRYLECKLAL 173
Query: 828 GWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSV 887
+R R+ H ++Y ++YKV NM + + DQ +T D+ + ++ L + + KP +
Sbjct: 174 AFRTRLVDHAYETYFANQTYYKVINMDGRLANPDQSLTEDIMMFSQSVAHLYSNLTKPIL 233
Query: 888 DILWFTWRMKALTGQRGVAILYAYMLLGL------GFLRSVTPEFGDLTSREQQLEGTFR 941
D++ ++ + RG + + +L GL L++ +P+FG L + E +G R
Sbjct: 234 DVILTSYTLIRTATSRGASPIGPTLLAGLVVYATAKVLKACSPKFGSLVAEEAHRKGYLR 293
Query: 942 FMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPH 1001
++H R+ A+ E +AF+ G E ++ ++ L L+L K+ + +++ F+ K +
Sbjct: 294 YVHSRIIANVEEIAFYRGHKVEMKQLQKCYKALAYQMNLILSKRLWYIMIEQFLMKYVWS 353
Query: 1002 N---VTWGLSLLYA-------MEHKGDRALVSTQGE-LAHALRFLASVVSQSFLAFGDIL 1050
+ + + ++ A +E +A+VS + E A LAS A I+
Sbjct: 354 SCGLIMVAIPIITATGFADGDLEDGPKQAMVSDRTEAFTTARNLLASGAD----AIERIM 409
Query: 1051 ELHRKFVELSGGINRIFELEELLDAAQPG--------------------DDEISGSSQHK 1090
+++ EL+G R++ + + D + G + +S + K
Sbjct: 410 SSYKEITELAGYTARVYNMFWVFDEVKRGIYKRTVTQEPENHSKRGGNLELPLSDTLAIK 469
Query: 1091 WNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLW 1150
D I + IITP+ +++A +L F++ G LL+TGPNG GKSS+FR+L GLW
Sbjct: 470 GTVIDVDHGIICENVPIITPAGEVVASRLNFKVEEGMHLLITGPNGCGKSSLFRILSGLW 529
Query: 1151 PVVSGSLTKPS-QHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLH 1209
PV G L KP QH+ FY+PQRPY LG+LRDQ+IYP S ++ +
Sbjct: 530 PVYEGVLYKPPPQHM----------FYIPQRPYMSLGSLRDQVIYPDSADD-------MR 572
Query: 1210 GKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARL 1269
KG D L+ IL V L ++++RE GWDA ++W+D+LS GE+QR+GMAR+
Sbjct: 573 EKG--------YTDQDLERILHSVHLYHIVQREG-GWDAVMDWKDVLSGGEKQRMGMARM 623
Query: 1270 FFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEG 1329
F+HKPK+ +LDECT+A S+DVE ++++ A GI+ ++ + RP+L +H+ L+ DGEG
Sbjct: 624 FYHKPKYALLDECTSAVSIDVEGKIFQAAIGAGISLLSITHRPSLWKYHTHLLQF-DGEG 682
Query: 1330 NWELRTISS 1338
W + +
Sbjct: 683 GWRFEQLDT 691
|
Probable transporter. Mus musculus (taxid: 10090) |
| >sp|Q8T8P3|ABCD2_DICDI ABC transporter D family member 2 OS=Dictyostelium discoideum GN=abcD2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 316 bits (810), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 198/611 (32%), Positives = 314/611 (51%), Gaps = 93/611 (15%)
Query: 117 RTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFR 176
RT LS +A++ G + R+ + + L+ S ++++ KY T L+L+FR
Sbjct: 132 RTMLSVSIAEIAGKNAQNLVARKWKEMRNGVLKFALVSIPASFVNASLKYETDMLALRFR 191
Query: 177 KIVTKLIHTRYFENMAYYKISHVDG--RITHPEQRLASDVPRFCSELSELVQDDLTAVTD 234
K +++ +H Y E + +YK SH+ G RI + +QR+ SD+ +FC+ +S L D
Sbjct: 192 KRLSEYVHKEYLEGVNFYKASHLGGADRIDNADQRVTSDIEQFCNSMSSLYTTLFKPFLD 251
Query: 235 GLLYTWRLC---SYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHS 291
+L+T +L + SP +F +Y + +G + + P FG+L +K+ +LEG YR +H
Sbjct: 252 LVLFTRKLVVVMGWGSPLLMF---SYFIVSGFLKKLIMPPFGRLTAKQSELEGNYRTVHQ 308
Query: 292 RLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAV 351
RL T+AE IAFY G KE I F + H V + G+ FL+KY + V
Sbjct: 309 RLITNAEEIAFYDGSRKERQIINLSFGDIYNHTGYVSYLKCLVGIFDGFLVKYCASIVGY 368
Query: 352 ILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYAD 411
++ P + G +S ++ + +T ++++L Q++G L + ++ ++GY
Sbjct: 369 GCMVLPIYTG--IRGSSGKDSTELTKDYIRNTQLMVALSQAIGQLVLLGNKVTLMAGYTS 426
Query: 412 RIHELMVISRELS-------------------------------------IED------- 427
R+ EL+ + + + +ED
Sbjct: 427 RVSELLEMIKSIKERGTSQFTIVHEDDVPNPLTNSPVNDKYDTSVDMSSWLEDWRKRSDQ 486
Query: 428 ----KSPQRN-----GSRNYFSEANYIE-----FSGVKVVTPTGNVLVENLTLKVEPGSN 473
K Q N G+ + ++E F V +V+P G +LVENL +V P N
Sbjct: 487 TRIVKRQQSNRSSASGATTVYGGGTFVEGDFIKFENVSIVSPEGKLLVENLDFQVMPNQN 546
Query: 474 LLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQL 533
++ITGPNGSGKSSLFR+LG LWPL G + KP ++I +VPQ+PY +GTLRDQ+
Sbjct: 547 VMITGPNGSGKSSLFRILGELWPLHCGTVIKP-----RKEDILFVPQKPYLVLGTLRDQI 601
Query: 534 IYPLTSDQEVEPLTHGGMVEL-LKNVDLEYLLDRYPPE----KEINWGD------ELSLG 582
IY P +H M +L + + DL++LL P ++ NW D LS G
Sbjct: 602 IY---------PHSHDDMKKLGVTDDDLQHLLATVDPNLTIIRQWNWDDTKDWFTALSGG 652
Query: 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHD 642
++QR+ MARLFYH+P++AILDECTSAV+ ++E + + +G + T+SHRP L A+HD
Sbjct: 653 QKQRIAMARLFYHRPQYAILDECTSAVSDEVEGKIYETCKKLGITLFTVSHRPQLRAYHD 712
Query: 643 VVLSLDGEGEW 653
VL +G G W
Sbjct: 713 YVLLFNGRGGW 723
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|P33897|ABCD1_HUMAN ATP-binding cassette sub-family D member 1 OS=Homo sapiens GN=ABCD1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 315 bits (806), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 194/597 (32%), Positives = 326/597 (54%), Gaps = 58/597 (9%)
Query: 107 LLAL-VGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFF--QLISENILLCFLLSTMHST 163
LLAL +V RT LS +A++ G L R +R+ P F QL+ + +L+ + ++S
Sbjct: 93 LLALHSAALVSRTFLSVYVARLDGRLARC-IVRKDPRAFGWQLL-QWLLIALPATFVNSA 150
Query: 164 SKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSE 223
+Y+ G L+L FR + + YF YY++S++DGR+ +P+Q L DV F + ++
Sbjct: 151 IRYLEGQLALSFRSRLVAHAYRLYFSQQTYYRVSNMDGRLRNPDQSLTEDVVAFAASVAH 210
Query: 224 LVQDDLTAVTDGLLYTWRL--------CSYASPKYVFWILAYVLGAGTMMRNFSPAFGKL 275
L + + D + ++ L A P + ++ ++ ++R FSP FG+L
Sbjct: 211 LYSNLTKPLLDVAVTSYTLLRAARSRGAGTAWPSAIAGLVVFL--TANVLRAFSPKFGEL 268
Query: 276 MSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFG 335
+++E + +GE R +HSR+ ++E IAFYGG E + +Q+ ++ L + ++L + W+
Sbjct: 269 VAEEARRKGELRYMHSRVVANSEEIAFYGGHEVELALLQRSYQDLASQINLILLERLWYV 328
Query: 336 MIQDFLLKYLGATVAVILIIEPFF--AGNLKPDTSTLGRAKM------LSNLRYHT---- 383
M++ FL+KY+ + ++++ P G + D + +A + L + R
Sbjct: 329 MLEQFLMKYVWSASGLLMVAVPIITATGYSESDAEAVKKAALEKKEEELVSERTEAFTIA 388
Query: 384 -SVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVI---------SRELSIEDKSP--- 430
+++ + ++ + S + + L+GY R+HE+ + R +ED
Sbjct: 389 RNLLTAAADAIERIMSSYKEVTELAGYTARVHEMFQVFEDVQRCHFKRPRELEDAQAGSG 448
Query: 431 --QRNGSR---------NYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGP 479
R+G R I + +VTP+G V+V +L ++VE G +LLITGP
Sbjct: 449 TIGRSGVRVEGPLKIRGQVVDVEQGIICENIPIVTPSGEVVVASLNIRVEEGMHLLITGP 508
Query: 480 NGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT- 538
NG GKSSLFR+LGGLWP G + KP + +FY+PQRPY +VG+LRDQ+IYP +
Sbjct: 509 NGCGKSSLFRILGGLWPTYGGVLYKPP-----PQRMFYIPQRPYMSVGSLRDQVIYPDSV 563
Query: 539 SDQEVEPLTHGGMVELLKNVDLEYLLDRYPP-EKEINWGDELSLGEQQRLGMARLFYHKP 597
D + + + + +L V L ++L R E +W D LS GE+QR+GMAR+FYH+P
Sbjct: 564 EDMQRKGYSEQDLEAILDVVHLHHILQREGGWEAMCDWKDVLSGGEKQRIGMARMFYHRP 623
Query: 598 KFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWR 654
K+A+LDECTSAV+ D+E + + G + ++I+HRP+L +H +L DGEG W+
Sbjct: 624 KYALLDECTSAVSIDVEGKIFQAAKDAGIALLSITHRPSLWKYHTHLLQFDGEGGWK 680
|
Probable transporter. The nucleotide-binding fold acts as an ATP-binding subunit with ATPase activity. Homo sapiens (taxid: 9606) |
| >sp|P48410|ABCD1_MOUSE ATP-binding cassette sub-family D member 1 OS=Mus musculus GN=Abcd1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 313 bits (801), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 197/645 (30%), Positives = 342/645 (53%), Gaps = 64/645 (9%)
Query: 59 GDSERKPDKAVANRSNIKKANQKKGGLKSLQVLAAILLSEMGKMGARDLLAL-VGIVVLR 117
G+ ++ A A ++ + + ++ + +L E G LLAL +V R
Sbjct: 51 GEPTQEASGATATKAGMNRVFLQRLLALLRLLFPRVLCRETG------LLALHSAALVSR 104
Query: 118 TALSNRLAKVQGFLFRAAFLRRVPLFF--QLISENILLCFLLSTMHSTSKYITGTLSLQF 175
T LS +A++ G L R +R+ P F QL+ + +L+ + ++S +Y+ G L+L F
Sbjct: 105 TFLSVYVARLDGRLARC-IVRKDPRAFSWQLL-QWLLIALPATFINSAIRYLEGQLALSF 162
Query: 176 RKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDG 235
R + + YF YY++S++DGR+ +P+Q L DV F + ++ L + + D
Sbjct: 163 RSRLVAHAYGLYFSQQTYYRVSNMDGRLRNPDQSLTEDVVAFAASVAHLYSNLTKPLLDV 222
Query: 236 LLYTWRLCSYAS--------PKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYR 287
+ ++ L A P + ++ ++ ++R FSP FG+L+++E + +GE R
Sbjct: 223 AVTSYTLLRAARSRGAGTAWPSAIAGLVVFL--TANVLRAFSPKFGELVAEEARRKGELR 280
Query: 288 QLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGA 347
+HSR+ ++E IAFYGG E + +Q ++ L + ++L + W+ M++ FL+KY+ +
Sbjct: 281 YMHSRVVANSEEIAFYGGHEVELALLQHSYQDLASQINLILLERLWYVMLEQFLMKYVWS 340
Query: 348 TVAVILIIEPFF--AGNLKPDTSTLGRAKM---LSNLRYHTSVIISLFQSLGTLSI---- 398
++++ P G + D+ + +A + L + ++ ++L T +
Sbjct: 341 ASGLLMVAVPIITATGYAESDSEAMKKAALEMKEEELVSERTEAFTIARNLLTAAADATE 400
Query: 399 ----SSRRLNRLSGYADRIHELMVISRELS------IEDKSPQRNGSRNYFSEANYIE-- 446
S + + L+GY R++E+ + ++ D + G ++E
Sbjct: 401 RIMSSYKEVTELAGYTARVYEMFQVFEDVKHCRFKRTGDLEEAQAGPGVMVQSGVHVEGP 460
Query: 447 ---------------FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVL 491
+ ++TPTG V+V +L ++VE G +LLITGPNG GKSSLFR+L
Sbjct: 461 LKIQGQVVDVEQGIICENIPIITPTGEVVVASLNIRVEEGMHLLITGPNGCGKSSLFRIL 520
Query: 492 GGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTS-DQEVEPLTHGG 550
GGLWP SG + KP + +FY+PQRPY +VG+LRDQ+IYP ++ D + +
Sbjct: 521 GGLWPTYSGVLYKPP-----PQRMFYIPQRPYMSVGSLRDQVIYPDSAEDMRRKGCSEQQ 575
Query: 551 MVELLKNVDLEYLLDRYPP-EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
+ +L V L ++L R E +W D LS GE+QR+GMAR+FYH+PK+A+LDECTSAV
Sbjct: 576 LEAILGIVHLRHILQREGGWEAVCDWKDVLSGGEKQRIGMARMFYHRPKYALLDECTSAV 635
Query: 610 TTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWR 654
+ D+E + + G + ++I+HRP+L +H +L DGEG W+
Sbjct: 636 SIDVEGKIFQAAKDAGIALLSITHRPSLWKYHTHLLQFDGEGGWK 680
|
Probable transporter. Could be involved in the import of VLCFA-CoA synthetase into the peroxisomal membrane. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1338 | ||||||
| 224083701 | 1309 | peroxisomal membrane ABC transporter fam | 0.976 | 0.997 | 0.815 | 0.0 | |
| 356540293 | 1339 | PREDICTED: ABC transporter D family memb | 0.993 | 0.992 | 0.816 | 0.0 | |
| 356540295 | 1354 | PREDICTED: ABC transporter D family memb | 0.993 | 0.981 | 0.807 | 0.0 | |
| 356528475 | 1342 | PREDICTED: ABC transporter D family memb | 0.997 | 0.994 | 0.810 | 0.0 | |
| 357463371 | 1349 | ABC transporter D family member [Medicag | 0.994 | 0.985 | 0.799 | 0.0 | |
| 356512707 | 1319 | PREDICTED: ABC transporter D family memb | 0.977 | 0.991 | 0.808 | 0.0 | |
| 357463369 | 1356 | ABC transporter D family member [Medicag | 0.994 | 0.980 | 0.795 | 0.0 | |
| 18478510 | 1337 | peroxisomal ABC transporter [Arabidopsis | 0.993 | 0.994 | 0.794 | 0.0 | |
| 18420546 | 1337 | ABC transporter D family member 1 [Arabi | 0.993 | 0.994 | 0.794 | 0.0 | |
| 255549548 | 1339 | peroxisomal abc transporter, putative [R | 0.981 | 0.980 | 0.816 | 0.0 |
| >gi|224083701|ref|XP_002307090.1| peroxisomal membrane ABC transporter family, PMP family [Populus trichocarpa] gi|222856539|gb|EEE94086.1| peroxisomal membrane ABC transporter family, PMP family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2245 bits (5818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1090/1337 (81%), Positives = 1196/1337 (89%), Gaps = 31/1337 (2%)
Query: 1 MPSLQSLPLTEHGRGILSSRRKTILLASGILVAGGTAAYLKSRFSSKKPDAFGHYNGLGD 60
MPSLQ L LTEHGRGIL+SRRK++L A+GIL AGGTA Y++SR SKK D+F +YNG+ D
Sbjct: 1 MPSLQLLQLTEHGRGILASRRKSLLFAAGILAAGGTAVYVQSRIRSKKSDSFLYYNGIKD 60
Query: 61 SERKPDKAVANRSNIKKANQKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTAL 120
++ DK V N KK QKKGGLK+LQ+LA++LLS MGK GA+DLLA++ I VL+T L
Sbjct: 61 DKKISDKLVTNG---KKTVQKKGGLKALQILASVLLSHMGKTGAKDLLAMIAIAVLKTTL 117
Query: 121 SNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVT 180
SNRLAKVQGFLFRAAFL+RVPLFF+LISENILLCFLLST++STSKY+TGTLSL FRKI+T
Sbjct: 118 SNRLAKVQGFLFRAAFLQRVPLFFRLISENILLCFLLSTINSTSKYVTGTLSLCFRKILT 177
Query: 181 KLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTW 240
K+IH YFENMAYYKISHVDGRIT+PEQR+ASDVPRFCSELSELV DDLTAVTDGLLYTW
Sbjct: 178 KVIHAHYFENMAYYKISHVDGRITNPEQRIASDVPRFCSELSELVLDDLTAVTDGLLYTW 237
Query: 241 RLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESI 300
RLCSYASPKY+FW++AYVLGAGT++RNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESI
Sbjct: 238 RLCSYASPKYLFWMVAYVLGAGTLIRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESI 297
Query: 301 AFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFA 360
AFYGGEN+EE HIQQKFK L HMR VLHDHWWFGMIQDFLLKY GATVAVILIIEPFFA
Sbjct: 298 AFYGGENREEFHIQQKFKTLIGHMRTVLHDHWWFGMIQDFLLKYFGATVAVILIIEPFFA 357
Query: 361 GNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVIS 420
G L+PD STLGRA+MLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHEL+ +S
Sbjct: 358 GQLRPDASTLGRAEMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELIAVS 417
Query: 421 RELSIEDKSP-QRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGP 479
RELS DKS QR+GSRNYFSEANY+EF GVKVVTP+GNVLV++LTLKV+ GSNLLITGP
Sbjct: 418 RELSNGDKSSLQRSGSRNYFSEANYVEFFGVKVVTPSGNVLVQDLTLKVDSGSNLLITGP 477
Query: 480 NGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTS 539
NGSGKSSLFRVLGGLWPLVSGHI KPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT+
Sbjct: 478 NGSGKSSLFRVLGGLWPLVSGHIVKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTA 537
Query: 540 DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599
DQE+EPLTH GMVELLKNVDLEYLLDRYPPEKE+NWG+ELSLGEQQRLGMARLFYHKPKF
Sbjct: 538 DQEIEPLTHSGMVELLKNVDLEYLLDRYPPEKEVNWGEELSLGEQQRLGMARLFYHKPKF 597
Query: 600 AILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKR 659
AILDECTSAVTTDMEERFCA+V+AMGTSCITISHRPALVAFHDVVLSLDGEG W V+ K
Sbjct: 598 AILDECTSAVTTDMEERFCAQVQAMGTSCITISHRPALVAFHDVVLSLDGEGGWLVNYKG 657
Query: 660 DGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIA 719
S +T++G ++ ET+R++DAM V++AF T+ K + SY+SEVIAASP
Sbjct: 658 KDSPALTEAGGDLTGDFETERKNDAMIVQKAFSTSDKAT-------HSYISEVIAASPNI 710
Query: 720 DHNVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIA 779
DHNV LP+ P L+ APR LPLRVA MFK+LVPT+ DKQGA LLAVAFLV+SRT++SDRIA
Sbjct: 711 DHNVLLPIVPPLQRAPRALPLRVAAMFKILVPTILDKQGAHLLAVAFLVISRTFVSDRIA 770
Query: 780 SLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLK 839
SLNGTTVK+VLEQDKASFVRLIGVSVLQSAASSFIAPS+RHLT RLALGWRIR+TQHLLK
Sbjct: 771 SLNGTTVKFVLEQDKASFVRLIGVSVLQSAASSFIAPSLRHLTTRLALGWRIRLTQHLLK 830
Query: 840 SYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKAL 899
+YLR N+FYKVF+MSSK+IDADQRITHDLEKLTTDLSGLVTGMVKP VDILWFTWRMK L
Sbjct: 831 NYLRNNTFYKVFHMSSKNIDADQRITHDLEKLTTDLSGLVTGMVKPLVDILWFTWRMKLL 890
Query: 900 TGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGG 959
TGQRGVAILY YMLLGLGFLR+VTP+FGDL S EQQLEGTFRFMHERLR HAESVAFFGG
Sbjct: 891 TGQRGVAILYTYMLLGLGFLRAVTPDFGDLASEEQQLEGTFRFMHERLRTHAESVAFFGG 950
Query: 960 GAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDR 1019
G REKAMIESRFRELL+HS+LLLKKKW +GILDDFVTKQLPHNVTWGLSLLYAMEHKGDR
Sbjct: 951 GKREKAMIESRFRELLDHSMLLLKKKWSYGILDDFVTKQLPHNVTWGLSLLYAMEHKGDR 1010
Query: 1020 ALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPG 1079
A+ STQGELAHALRFLASVVSQSFLAFGDILELH+KF ELSG INRIFELEELLDAAQ
Sbjct: 1011 AMTSTQGELAHALRFLASVVSQSFLAFGDILELHKKFAELSGSINRIFELEELLDAAQ-- 1068
Query: 1080 DDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGK 1139
D+ISF ++DIITP+QKLLARQLTF+I KSLL+TGPNGSGK
Sbjct: 1069 -----------------SDAISFMEVDIITPAQKLLARQLTFDIEQRKSLLLTGPNGSGK 1111
Query: 1140 SSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSRE 1199
SSVFRVLRGLWP+ SG + KPSQHI +E GSGC +FYVPQRPYTCLGTLRDQIIYPLSR+
Sbjct: 1112 SSVFRVLRGLWPIASGRIAKPSQHISKETGSGCAVFYVPQRPYTCLGTLRDQIIYPLSRD 1171
Query: 1200 EAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLG 1259
EAE+ L+L+ KG+ + TN+LDS LK ILE VRL+YLLERE GWDAN+NWED LSLG
Sbjct: 1172 EAEVMTLELYEKGKLSTEITNMLDSCLKNILENVRLNYLLEREG-GWDANMNWEDTLSLG 1230
Query: 1260 EQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHS 1319
EQQRLGMARLFFHKPKF ILDECTNATSVDVEEQLYRLA DMGITF+TSSQRPALIPFHS
Sbjct: 1231 EQQRLGMARLFFHKPKFAILDECTNATSVDVEEQLYRLASDMGITFITSSQRPALIPFHS 1290
Query: 1320 LELRLIDGEGNWELRTI 1336
LELRLIDGEG+WELR I
Sbjct: 1291 LELRLIDGEGHWELRAI 1307
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356540293|ref|XP_003538624.1| PREDICTED: ABC transporter D family member 1-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2233 bits (5787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1097/1344 (81%), Positives = 1197/1344 (89%), Gaps = 15/1344 (1%)
Query: 1 MPSLQSLPLTEHGRGILSSRRKTILLASGILVAGGTAAYLKSRFSSKKPDAFGHYNGLGD 60
M SLQ L LT G+ L+SRR+T+LLASGIL+AGGTAAY++SRF K D FGH NG +
Sbjct: 1 MSSLQLLQLTRRGQSFLASRRRTLLLASGILIAGGTAAYVQSRFRVNKHDLFGHCNGHNN 60
Query: 61 SERKPDKAVANRSNIKKAN----QKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVL 116
DK V +K + ++K GLKSLQVLAAILLS MGK GARDLL LV I VL
Sbjct: 61 -----DKEVTEEEVVKGVSAPKKKQKKGLKSLQVLAAILLSGMGKFGARDLLGLVVIAVL 115
Query: 117 RTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFR 176
RTALSNRLAKVQGFLFRAAFLRRVPLF +LISENILLCFLLST+HSTSKYITGTLSL FR
Sbjct: 116 RTALSNRLAKVQGFLFRAAFLRRVPLFLRLISENILLCFLLSTIHSTSKYITGTLSLHFR 175
Query: 177 KIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGL 236
KI+TKLIH+ YFENM YYKISHVDGRIT+PEQR+ASDVPRFCSELSE+VQDDLTAVTDGL
Sbjct: 176 KILTKLIHSHYFENMVYYKISHVDGRITNPEQRIASDVPRFCSELSEIVQDDLTAVTDGL 235
Query: 237 LYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTH 296
LYTWRLCSYASPKYV WIL YVLGAG +RNFSP+FGKLMSKEQQLEGEYRQLH+RLRTH
Sbjct: 236 LYTWRLCSYASPKYVVWILVYVLGAGAAIRNFSPSFGKLMSKEQQLEGEYRQLHARLRTH 295
Query: 297 AESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIE 356
+ESIAFYGGE KEE+HIQQKFK L RHM VLHDHWWFGMIQD LLKYLGATVAVILIIE
Sbjct: 296 SESIAFYGGERKEETHIQQKFKTLVRHMYSVLHDHWWFGMIQDLLLKYLGATVAVILIIE 355
Query: 357 PFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHEL 416
PFF+G+L+PD+STLGRA MLSNLRYHTSVIISLFQSLGTLSIS+RRLNRLSGYADRI+EL
Sbjct: 356 PFFSGHLRPDSSTLGRADMLSNLRYHTSVIISLFQSLGTLSISARRLNRLSGYADRIYEL 415
Query: 417 MVISRELSI--EDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNL 474
M +SRELS+ E S QRN SRN EANYIEF GVKVVTPTGNVLV++LTL+VE GSNL
Sbjct: 416 MAVSRELSLVNEKSSLQRNASRNCIREANYIEFDGVKVVTPTGNVLVDDLTLRVESGSNL 475
Query: 475 LITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLI 534
LITGPNGSGKSSLFRVLGGLWPL+SGHI KPG+GSDLN EIFYVPQRPYTAVGTLRDQLI
Sbjct: 476 LITGPNGSGKSSLFRVLGGLWPLISGHIVKPGIGSDLNNEIFYVPQRPYTAVGTLRDQLI 535
Query: 535 YPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594
YPLT DQE+EPLT GMVELLKNVDLEYLLDRYPPE+E+NWGDELSLGEQQRLGMARLFY
Sbjct: 536 YPLTEDQEIEPLTDRGMVELLKNVDLEYLLDRYPPEREVNWGDELSLGEQQRLGMARLFY 595
Query: 595 HKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWR 654
HKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEG W
Sbjct: 596 HKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWS 655
Query: 655 VHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIA 714
VH KR+GSS T+ GI+ +K+SET RQSDA AV++AF +KKDSAFSNPKAQSY +EVI+
Sbjct: 656 VHYKREGSS--TEVGIDTMKASETKRQSDAKAVQRAFSMSKKDSAFSNPKAQSYFAEVIS 713
Query: 715 ASPIADHNVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWI 774
+SP +H +P V PQL R+LPLRVA M KVLVPTV DKQGAQLLAVAFLVVSRTW+
Sbjct: 714 SSPSMNHTIPPSVVPQLHCNTRVLPLRVAAMCKVLVPTVLDKQGAQLLAVAFLVVSRTWV 773
Query: 775 SDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMT 834
SDRIASLNGTTVK+VLEQDKASF+RLIG+SVLQS ASSFIAPSIRHLTARLALGWR+R+T
Sbjct: 774 SDRIASLNGTTVKFVLEQDKASFIRLIGLSVLQSVASSFIAPSIRHLTARLALGWRVRLT 833
Query: 835 QHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTW 894
QHLLK+YLR N+FYKVF+M++K+IDADQRITHDLEKLT DLSGLVTGMVKPSVDILWFTW
Sbjct: 834 QHLLKNYLRNNAFYKVFHMANKNIDADQRITHDLEKLTADLSGLVTGMVKPSVDILWFTW 893
Query: 895 RMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESV 954
RMK LTGQRGVAILYAYMLLGLGFLR+VTP+FG+L S+EQQLEGTFRFMHERL HAESV
Sbjct: 894 RMKLLTGQRGVAILYAYMLLGLGFLRTVTPDFGNLISQEQQLEGTFRFMHERLCTHAESV 953
Query: 955 AFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAME 1014
AFFGGGAREKAM+ESRFRELL HS LLKKKWLFGILDDF+TKQLPHNVTW LSLLYAME
Sbjct: 954 AFFGGGAREKAMVESRFRELLSHSKYLLKKKWLFGILDDFITKQLPHNVTWLLSLLYAME 1013
Query: 1015 HKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLD 1074
HKGDRA +STQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLD
Sbjct: 1014 HKGDRASISTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLD 1073
Query: 1075 AAQPGDDEISGSSQHKWNSTDY--QDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVT 1132
A+Q G S +S DY +D+ISF +DI+TP+QK+LAR+LT +I GKSLLVT
Sbjct: 1074 ASQSGTSGDSINSSITSPIWDYHGKDAISFCMVDIVTPTQKMLARELTCDIEFGKSLLVT 1133
Query: 1133 GPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQI 1192
GPNGSGKSS+FRVLRGLWP+ SG L++PS+ +D EAGSGCGIFYVPQRPYTCLGTLRDQI
Sbjct: 1134 GPNGSGKSSIFRVLRGLWPIASGRLSRPSEDVDLEAGSGCGIFYVPQRPYTCLGTLRDQI 1193
Query: 1193 IYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNW 1252
IYPLSREEA+ +ALK+HGKGEK D +LD++L+ ILE VRL+YLLER+ GWDANLNW
Sbjct: 1194 IYPLSREEAQFQALKMHGKGEKHPDLRIMLDTHLQVILENVRLNYLLERDNNGWDANLNW 1253
Query: 1253 EDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRP 1312
EDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEE LY LA MGIT VTSSQRP
Sbjct: 1254 EDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEHLYGLANKMGITVVTSSQRP 1313
Query: 1313 ALIPFHSLELRLIDGEGNWELRTI 1336
ALIPFHS+EL LIDGEGNWELR+I
Sbjct: 1314 ALIPFHSMELHLIDGEGNWELRSI 1337
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356540295|ref|XP_003538625.1| PREDICTED: ABC transporter D family member 1-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2224 bits (5762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1097/1359 (80%), Positives = 1197/1359 (88%), Gaps = 30/1359 (2%)
Query: 1 MPSLQSLPLTEHGRGILSSRRKTILLASGILVAGGTAAYLKSRFSSKKPDAFGHYNGLGD 60
M SLQ L LT G+ L+SRR+T+LLASGIL+AGGTAAY++SRF K D FGH NG +
Sbjct: 1 MSSLQLLQLTRRGQSFLASRRRTLLLASGILIAGGTAAYVQSRFRVNKHDLFGHCNGHNN 60
Query: 61 SERKPDKAVANRSNIKKAN----QKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVL 116
DK V +K + ++K GLKSLQVLAAILLS MGK GARDLL LV I VL
Sbjct: 61 -----DKEVTEEEVVKGVSAPKKKQKKGLKSLQVLAAILLSGMGKFGARDLLGLVVIAVL 115
Query: 117 RTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFR 176
RTALSNRLAKVQGFLFRAAFLRRVPLF +LISENILLCFLLST+HSTSKYITGTLSL FR
Sbjct: 116 RTALSNRLAKVQGFLFRAAFLRRVPLFLRLISENILLCFLLSTIHSTSKYITGTLSLHFR 175
Query: 177 KIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGL 236
KI+TKLIH+ YFENM YYKISHVDGRIT+PEQR+ASDVPRFCSELSE+VQDDLTAVTDGL
Sbjct: 176 KILTKLIHSHYFENMVYYKISHVDGRITNPEQRIASDVPRFCSELSEIVQDDLTAVTDGL 235
Query: 237 LYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTH 296
LYTWRLCSYASPKYV WIL YVLGAG +RNFSP+FGKLMSKEQQLEGEYRQLH+RLRTH
Sbjct: 236 LYTWRLCSYASPKYVVWILVYVLGAGAAIRNFSPSFGKLMSKEQQLEGEYRQLHARLRTH 295
Query: 297 AESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIE 356
+ESIAFYGGE KEE+HIQQKFK L RHM VLHDHWWFGMIQD LLKYLGATVAVILIIE
Sbjct: 296 SESIAFYGGERKEETHIQQKFKTLVRHMYSVLHDHWWFGMIQDLLLKYLGATVAVILIIE 355
Query: 357 PFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHEL 416
PFF+G+L+PD+STLGRA MLSNLRYHTSVIISLFQSLGTLSIS+RRLNRLSGYADRI+EL
Sbjct: 356 PFFSGHLRPDSSTLGRADMLSNLRYHTSVIISLFQSLGTLSISARRLNRLSGYADRIYEL 415
Query: 417 MVISRELSI--EDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNL 474
M +SRELS+ E S QRN SRN EANYIEF GVKVVTPTGNVLV++LTL+VE GSNL
Sbjct: 416 MAVSRELSLVNEKSSLQRNASRNCIREANYIEFDGVKVVTPTGNVLVDDLTLRVESGSNL 475
Query: 475 LITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLI 534
LITGPNGSGKSSLFRVLGGLWPL+SGHI KPG+GSDLN EIFYVPQRPYTAVGTLRDQLI
Sbjct: 476 LITGPNGSGKSSLFRVLGGLWPLISGHIVKPGIGSDLNNEIFYVPQRPYTAVGTLRDQLI 535
Query: 535 YPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594
YPLT DQE+EPLT GMVELLKNVDLEYLLDRYPPE+E+NWGDELSLGEQQRLGMARLFY
Sbjct: 536 YPLTEDQEIEPLTDRGMVELLKNVDLEYLLDRYPPEREVNWGDELSLGEQQRLGMARLFY 595
Query: 595 HKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWR 654
HKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEG W
Sbjct: 596 HKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWS 655
Query: 655 VHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIA 714
VH KR+GSS T+ GI+ +K+SET RQSDA AV++AF +KKDSAFSNPKAQSY +EVI+
Sbjct: 656 VHYKREGSS--TEVGIDTMKASETKRQSDAKAVQRAFSMSKKDSAFSNPKAQSYFAEVIS 713
Query: 715 ASPIADHNVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWI 774
+SP +H +P V PQL R+LPLRVA M KVLVPTV DKQGAQLLAVAFLVVSRTW+
Sbjct: 714 SSPSMNHTIPPSVVPQLHCNTRVLPLRVAAMCKVLVPTVLDKQGAQLLAVAFLVVSRTWV 773
Query: 775 SDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMT 834
SDRIASLNGTTVK+VLEQDKASF+RLIG+SVLQS ASSFIAPSIRHLTARLALGWR+R+T
Sbjct: 774 SDRIASLNGTTVKFVLEQDKASFIRLIGLSVLQSVASSFIAPSIRHLTARLALGWRVRLT 833
Query: 835 QHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTW 894
QHLLK+YLR N+FYKVF+M++K+IDADQRITHDLEKLT DLSGLVTGMVKPSVDILWFTW
Sbjct: 834 QHLLKNYLRNNAFYKVFHMANKNIDADQRITHDLEKLTADLSGLVTGMVKPSVDILWFTW 893
Query: 895 RMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESV 954
RMK LTGQRGVAILYAYMLLGLGFLR+VTP+FG+L S+EQQLEGTFRFMHERL HAESV
Sbjct: 894 RMKLLTGQRGVAILYAYMLLGLGFLRTVTPDFGNLISQEQQLEGTFRFMHERLCTHAESV 953
Query: 955 AFFGGGAREKA---------------MIESRFRELLEHSLLLLKKKWLFGILDDFVTKQL 999
AFFGGGAREKA M+ESRFRELL HS LLKKKWLFGILDDF+TKQL
Sbjct: 954 AFFGGGAREKAVSFCMSLFYYLNFLQMVESRFRELLSHSKYLLKKKWLFGILDDFITKQL 1013
Query: 1000 PHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVEL 1059
PHNVTW LSLLYAMEHKGDRA +STQGELAHALRFLASVVSQSFLAFGDILELHRKFVEL
Sbjct: 1014 PHNVTWLLSLLYAMEHKGDRASISTQGELAHALRFLASVVSQSFLAFGDILELHRKFVEL 1073
Query: 1060 SGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDY--QDSISFSKLDIITPSQKLLAR 1117
SGGINRIFELEELLDA+Q G S +S DY +D+ISF +DI+TP+QK+LAR
Sbjct: 1074 SGGINRIFELEELLDASQSGTSGDSINSSITSPIWDYHGKDAISFCMVDIVTPTQKMLAR 1133
Query: 1118 QLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYV 1177
+LT +I GKSLLVTGPNGSGKSS+FRVLRGLWP+ SG L++PS+ +D EAGSGCGIFYV
Sbjct: 1134 ELTCDIEFGKSLLVTGPNGSGKSSIFRVLRGLWPIASGRLSRPSEDVDLEAGSGCGIFYV 1193
Query: 1178 PQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSY 1237
PQRPYTCLGTLRDQIIYPLSREEA+ +ALK+HGKGEK D +LD++L+ ILE VRL+Y
Sbjct: 1194 PQRPYTCLGTLRDQIIYPLSREEAQFQALKMHGKGEKHPDLRIMLDTHLQVILENVRLNY 1253
Query: 1238 LLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRL 1297
LLER+ GWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEE LY L
Sbjct: 1254 LLERDNNGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEHLYGL 1313
Query: 1298 AKDMGITFVTSSQRPALIPFHSLELRLIDGEGNWELRTI 1336
A MGIT VTSSQRPALIPFHS+EL LIDGEGNWELR+I
Sbjct: 1314 ANKMGITVVTSSQRPALIPFHSMELHLIDGEGNWELRSI 1352
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528475|ref|XP_003532828.1| PREDICTED: ABC transporter D family member 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2217 bits (5744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1088/1342 (81%), Positives = 1188/1342 (88%), Gaps = 8/1342 (0%)
Query: 1 MPSLQSLPLTEHGRGILSSRRKTILLASGILVAGGTAAYLKSRFSSKKPDAFGHYNGLGD 60
M SLQ LT+HGR L+SRRKT+LLA+GILVAGGT AY++SRF + D G +
Sbjct: 1 MSSLQLFQLTQHGRSFLASRRKTLLLATGILVAGGTTAYVQSRFRVNRDDLLGDSYECNN 60
Query: 61 SERKPDKAVANRSNIKKANQKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTAL 120
+ + V ++ K QKKGGLKSLQVLAAILLSEMG++GA++LLALV IVVLRT L
Sbjct: 61 DKELTKEEVMKGTSAPKNKQKKGGLKSLQVLAAILLSEMGQLGAKNLLALVSIVVLRTTL 120
Query: 121 SNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVT 180
SNRLAKVQGFLFRAAFLRRVPLF +LISENILLCFLLSTM STSKYITGTLSL FRKI+T
Sbjct: 121 SNRLAKVQGFLFRAAFLRRVPLFLRLISENILLCFLLSTMQSTSKYITGTLSLHFRKILT 180
Query: 181 KLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTW 240
KLIH+RYFENM YYKISHVDGRIT+PEQR+ASDVPRFCSELSE+VQDDLTAVTDGLLYTW
Sbjct: 181 KLIHSRYFENMVYYKISHVDGRITNPEQRIASDVPRFCSELSEIVQDDLTAVTDGLLYTW 240
Query: 241 RLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESI 300
RLCSYASPKY+FWILAYVLGAG +RNFSPAFGKLMS+EQ+LEG YRQLHSRLRTH+ESI
Sbjct: 241 RLCSYASPKYIFWILAYVLGAGAAIRNFSPAFGKLMSREQELEGGYRQLHSRLRTHSESI 300
Query: 301 AFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFA 360
AFYGGE +EE+HIQQKF+ L RH+ VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFF+
Sbjct: 301 AFYGGEKREEAHIQQKFRTLVRHINRVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFS 360
Query: 361 GNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVIS 420
G+L+PD+STLGRA+MLSNLRYHTSVIISLFQSLGTLSIS+RRLNRLSGYADRIHELM IS
Sbjct: 361 GHLRPDSSTLGRAEMLSNLRYHTSVIISLFQSLGTLSISARRLNRLSGYADRIHELMAIS 420
Query: 421 RELSIED--KSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITG 478
RELS+E+ S QR GSRN SEANY+ F GVKVVTPTGNVLV +LTLKVE GSNLLITG
Sbjct: 421 RELSLENGKSSLQRQGSRNCISEANYVGFYGVKVVTPTGNVLVNDLTLKVESGSNLLITG 480
Query: 479 PNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT 538
PNGSGKSSLFRVLGGLWPLVSGHI KPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT
Sbjct: 481 PNGSGKSSLFRVLGGLWPLVSGHIVKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT 540
Query: 539 SDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598
DQEVEPLT MVELLKNVDLEYLLDRYPPEKE+NWGDELSLGEQQRLGMARLFYHKPK
Sbjct: 541 VDQEVEPLTDSRMVELLKNVDLEYLLDRYPPEKEVNWGDELSLGEQQRLGMARLFYHKPK 600
Query: 599 FAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDK 658
FAILDECTSAVTTDMEERFCA V AMGTSCITISHRPALVAFHDVVLSLDGEG W VH +
Sbjct: 601 FAILDECTSAVTTDMEERFCANVLAMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHHR 660
Query: 659 RDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEV-IAASP 717
R+ SS T+ G +M+K+SET RQSDA AV++AF KKDSAF N KAQS +SEV IA+SP
Sbjct: 661 REDSS--TELGNDMMKASETKRQSDAKAVQRAFAMNKKDSAFLNSKAQSDISEVIIASSP 718
Query: 718 IADHNVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDR 777
N+ PQL R LP+RVA M KVLVPT+FDKQGA+LLAV FLVVSRTW+SDR
Sbjct: 719 SMKRNISPSAVPQLHGNTRALPMRVAAMCKVLVPTIFDKQGARLLAVVFLVVSRTWVSDR 778
Query: 778 IASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHL 837
IASLNGTTVK VLEQDKASF+RLIG+SVLQSAASSFIAPSIRHLTARLALG R +TQHL
Sbjct: 779 IASLNGTTVKLVLEQDKASFIRLIGLSVLQSAASSFIAPSIRHLTARLALGGRTHLTQHL 838
Query: 838 LKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMK 897
LK+YLR N+FYKVF+M+SK+IDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMK
Sbjct: 839 LKNYLRNNAFYKVFHMASKNIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMK 898
Query: 898 ALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFF 957
LTG+RGVAILYAYMLLGLGFLR+VTP+FG+L S+EQQLEGTFRFMHERL HAESVAFF
Sbjct: 899 MLTGRRGVAILYAYMLLGLGFLRTVTPDFGNLISQEQQLEGTFRFMHERLCTHAESVAFF 958
Query: 958 GGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKG 1017
GGGAREKAM+ESRFRELL HS LLKKKWLFGILDDF+TKQLPHNVTWGLSL+YAMEHKG
Sbjct: 959 GGGAREKAMVESRFRELLTHSEYLLKKKWLFGILDDFITKQLPHNVTWGLSLIYAMEHKG 1018
Query: 1018 DRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQ 1077
DRA V+TQGELAHALRFLASVVSQSFLAFGDILEL++KFVELSGGINRIFELEELLDAAQ
Sbjct: 1019 DRASVTTQGELAHALRFLASVVSQSFLAFGDILELNKKFVELSGGINRIFELEELLDAAQ 1078
Query: 1078 PG---DDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGP 1134
G ++ S S+ D ISFSK+DIITP+QK+L R+L +I G SLLVTGP
Sbjct: 1079 SGICTENFTSVSAIPPMRDVHSSDVISFSKVDIITPAQKMLVRELICDIKRGGSLLVTGP 1138
Query: 1135 NGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIY 1194
NGSGKSS+FRVLRGLWP+ SG L++PS+ +DEE GSGCGIFYVPQRPYTCLGTLRDQIIY
Sbjct: 1139 NGSGKSSIFRVLRGLWPIASGRLSRPSEVVDEEDGSGCGIFYVPQRPYTCLGTLRDQIIY 1198
Query: 1195 PLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWED 1254
PLSREEAE++ALK++GKGEK DT N+LD+ LK ILE VRL+YLLERE WDANL WED
Sbjct: 1199 PLSREEAEVKALKMYGKGEKHADTRNLLDTRLKVILESVRLNYLLEREGSNWDANLKWED 1258
Query: 1255 ILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPAL 1314
ILSLGEQQRLGMARLFFH+PKFGILDECTNATSVDVEE LY LAKDMGIT VTSSQRPAL
Sbjct: 1259 ILSLGEQQRLGMARLFFHEPKFGILDECTNATSVDVEEHLYGLAKDMGITVVTSSQRPAL 1318
Query: 1315 IPFHSLELRLIDGEGNWELRTI 1336
IPFHS+ELRLIDGEGNW+LR I
Sbjct: 1319 IPFHSMELRLIDGEGNWKLRLI 1340
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357463371|ref|XP_003601967.1| ABC transporter D family member [Medicago truncatula] gi|355491015|gb|AES72218.1| ABC transporter D family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 2202 bits (5705), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1082/1353 (79%), Positives = 1199/1353 (88%), Gaps = 23/1353 (1%)
Query: 1 MPSLQSLPLTEHGRGILSSRRKTILLASGILVAGGTAAYLKSRFSSKKPDAFGHYNGLGD 60
MPSLQ L T HG+ L+SRRK ILLASGIL+AGGTAAY++SRF K D FGH N +
Sbjct: 1 MPSLQLLKFTRHGQNFLASRRKAILLASGILIAGGTAAYMQSRFRVNKHDLFGHCNEQNN 60
Query: 61 SERKPDKAVANRSNIKKANQKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTAL 120
+ + V N S K QKKGG+KSLQVL AILLS+MG++G ++LLALV VVLRTAL
Sbjct: 61 DKEVKKEEVINDSTKPKNKQKKGGMKSLQVLTAILLSDMGQLGVKNLLALVVTVVLRTAL 120
Query: 121 SNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVT 180
SNRLAKVQGFLFRAAFLRR PLFF+LISENI+LCFLLST+HSTSKYITGTLSL FRK++T
Sbjct: 121 SNRLAKVQGFLFRAAFLRRAPLFFRLISENIILCFLLSTIHSTSKYITGTLSLHFRKVLT 180
Query: 181 KLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTW 240
KLIH+ YFENM YYKISHVDGRIT+PEQR+ASDVP+FCSELSE+VQDDL AVTDGLLYTW
Sbjct: 181 KLIHSHYFENMVYYKISHVDGRITNPEQRIASDVPKFCSELSEIVQDDLAAVTDGLLYTW 240
Query: 241 RLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESI 300
RLCSYASPKYVFWILAYVLGAG +RNFSP FGKLMS EQQLEG+YRQLHSRLRTH+ESI
Sbjct: 241 RLCSYASPKYVFWILAYVLGAGAAIRNFSPPFGKLMSTEQQLEGDYRQLHSRLRTHSESI 300
Query: 301 AFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFA 360
AFYGGE +EE+HIQ KFK L RHMR VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFF+
Sbjct: 301 AFYGGERREEAHIQHKFKTLVRHMRRVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFS 360
Query: 361 GNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVIS 420
GNL+PD+STLGRA+MLSNLRYHTSVIISLFQSLGTLSI +RRLNRLSGYADRI+ELM +S
Sbjct: 361 GNLRPDSSTLGRAEMLSNLRYHTSVIISLFQSLGTLSIGARRLNRLSGYADRIYELMAVS 420
Query: 421 RELSIEDK--SPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITG 478
RELS+ D+ S QR GSRN SEANYIEFS VKVVTPTGNVLV++L+L+VE GSNLLITG
Sbjct: 421 RELSLVDEKSSLQRQGSRNCISEANYIEFSNVKVVTPTGNVLVDDLSLRVEQGSNLLITG 480
Query: 479 PNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT 538
PNGSGKSSLFRVLGGLWPL+SGHI KPG+GSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT
Sbjct: 481 PNGSGKSSLFRVLGGLWPLISGHIVKPGIGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT 540
Query: 539 SDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598
S+QEVEPLT GMVELLKNVDLEYLLDRY PEKE+NWGDELSLGEQQRLGMARLFYHKPK
Sbjct: 541 SNQEVEPLTDHGMVELLKNVDLEYLLDRYLPEKEVNWGDELSLGEQQRLGMARLFYHKPK 600
Query: 599 FAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDK 658
FAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEG W VH +
Sbjct: 601 FAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHYR 660
Query: 659 RDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPI 718
R+ SS T+ GI+ +K+SET RQ+DA AV++AF +KKDSAFS+ KA+SY+++VI +SP
Sbjct: 661 REDSS--TEMGIDTMKASETKRQTDAKAVQRAFAMSKKDSAFSSSKAESYIADVIYSSPS 718
Query: 719 ADH-NVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDR 777
+H N+P V PQL RILPLRVA MFKVLVPTVFDKQGAQLLAVA LVVSRTW+SDR
Sbjct: 719 TNHTNLPSTV-PQLHGNTRILPLRVAAMFKVLVPTVFDKQGAQLLAVALLVVSRTWVSDR 777
Query: 778 IASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHL 837
IASLNGTTVK+VLEQDKA+F+RLIG+SVLQSAASSFIAPSIRHLTARLALGWRIR+TQHL
Sbjct: 778 IASLNGTTVKFVLEQDKAAFIRLIGISVLQSAASSFIAPSIRHLTARLALGWRIRLTQHL 837
Query: 838 LKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMK 897
LK+YLR N FYKVF+M+SKS+DADQRIT DLEKLTTDLSGLVTG+VKPSVDILWFTWRMK
Sbjct: 838 LKNYLRSNVFYKVFHMASKSVDADQRITQDLEKLTTDLSGLVTGLVKPSVDILWFTWRMK 897
Query: 898 ALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFF 957
LTGQRGVAILYAYMLLGLGFLR+VTP+FGDL S+EQQLEG FRFMHERL HAESVAFF
Sbjct: 898 LLTGQRGVAILYAYMLLGLGFLRTVTPDFGDLISQEQQLEGIFRFMHERLCTHAESVAFF 957
Query: 958 GGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKG 1017
GGGAREKAM+ESRF +LL HS LLKKK LFGILDDF+TKQLPHNVTW LSLLYAMEHKG
Sbjct: 958 GGGAREKAMVESRFSDLLIHSQYLLKKKCLFGILDDFITKQLPHNVTWLLSLLYAMEHKG 1017
Query: 1018 DRALVST------------QGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINR 1065
DRA++ST GELAHALRFLASVVSQSFLAFGDILEL+RK VELSGG+NR
Sbjct: 1018 DRAVISTLGRIVGLFSHYITGELAHALRFLASVVSQSFLAFGDILELNRKLVELSGGVNR 1077
Query: 1066 IFELEELLDAAQPGDDEISGSSQHKWNSTDY--QDSISFSKLDIITPSQKLLARQLTFEI 1123
IFELEELLDAA G+ G ++TDY +D ISFSK++I+TPSQK+LAR+LT ++
Sbjct: 1078 IFELEELLDAAHSGEFINGGPIS---SATDYHSKDVISFSKVNIVTPSQKMLARELTCDV 1134
Query: 1124 VPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYT 1183
G+SLLVTGPNGSGKSS+FRVLRGLWP+ SG ++PS+ +D++ GSGC IFYVPQRPYT
Sbjct: 1135 ELGRSLLVTGPNGSGKSSIFRVLRGLWPIASGRFSRPSEDLDQDVGSGCSIFYVPQRPYT 1194
Query: 1184 CLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREE 1243
CLGTLRDQIIYPLSREEAELRALK++GKGEK DT +LD +L+ ILE VRL+YLLER+
Sbjct: 1195 CLGTLRDQIIYPLSREEAELRALKMYGKGEKHPDTVKLLDKHLEVILENVRLNYLLERDT 1254
Query: 1244 VGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGI 1303
GWDANLNWED LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEE LY LAK M I
Sbjct: 1255 SGWDANLNWEDTLSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEHLYGLAKKMEI 1314
Query: 1304 TFVTSSQRPALIPFHSLELRLIDGEGNWELRTI 1336
TF+TSSQRPALIP+HS+ELRLIDGEGNW+LR+I
Sbjct: 1315 TFITSSQRPALIPYHSMELRLIDGEGNWQLRSI 1347
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356512707|ref|XP_003525058.1| PREDICTED: ABC transporter D family member 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2202 bits (5705), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1088/1345 (80%), Positives = 1184/1345 (88%), Gaps = 37/1345 (2%)
Query: 1 MPSLQSLPLTEHGRGILSSRRKTILLASGILVAGGTAAYLKSRFSSKKPDAFGHYNGLGD 60
M SLQ LT HGR L+SRRKT+LLA+GILVAGGTAAY++SRF + D LGD
Sbjct: 1 MSSLQLFQLTHHGRSFLASRRKTLLLATGILVAGGTAAYVQSRFRGNRDDL------LGD 54
Query: 61 S-ERKPDKAVANRSNIK-----KANQKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIV 114
S ER DK + +K K QKKGGLKSLQVLAAILLSEMG++GA++LL+LV IV
Sbjct: 55 SYERNNDKELTKEEVMKGTSAPKNKQKKGGLKSLQVLAAILLSEMGQLGAKNLLSLVSIV 114
Query: 115 VLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQ 174
VLRT LSNRLAKVQGFLFRAAFLRRVPLF +LISENILLCFLLSTM STSKYITGTLSL
Sbjct: 115 VLRTTLSNRLAKVQGFLFRAAFLRRVPLFLRLISENILLCFLLSTMQSTSKYITGTLSLH 174
Query: 175 FRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTD 234
FRKI+TKLIH+RYFENM YYKISHVDGRIT+PEQR+ASDVPRFCSELSE+VQDDLTAVTD
Sbjct: 175 FRKILTKLIHSRYFENMVYYKISHVDGRITNPEQRIASDVPRFCSELSEIVQDDLTAVTD 234
Query: 235 GLLYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLR 294
GLLYTWRLCSYASPKY+FWILAYVLGAG +RNFSPAFGKLMS+EQ+LEGEYRQLHSRLR
Sbjct: 235 GLLYTWRLCSYASPKYIFWILAYVLGAGATIRNFSPAFGKLMSREQELEGEYRQLHSRLR 294
Query: 295 THAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILI 354
TH+ESIAFYGGE +EE+HIQQKF+ L RH+ VLHDHWWFGMIQDFLLKYLGATVAVILI
Sbjct: 295 THSESIAFYGGERREEAHIQQKFRTLVRHINRVLHDHWWFGMIQDFLLKYLGATVAVILI 354
Query: 355 IEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIH 414
IEPFF+G+L+PD+STLGRA+MLSNLRYHTSVIISLFQSLGTLSIS+RRLNRLSGYADRIH
Sbjct: 355 IEPFFSGHLRPDSSTLGRAEMLSNLRYHTSVIISLFQSLGTLSISARRLNRLSGYADRIH 414
Query: 415 ELMVISRELSIED--KSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGS 472
ELM ISRELS+++ S QR GSRNY SEANY+ F GVKVVTPTGNVLV++LTLKV+ GS
Sbjct: 415 ELMAISRELSLDNGKSSLQRQGSRNYISEANYVGFYGVKVVTPTGNVLVDDLTLKVQSGS 474
Query: 473 NLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQ 532
NLLITGPNGSGKSSLFRVLGGLWPLVSGHI KPGVGSDLNKEIFYVPQRPYTAVGTLRDQ
Sbjct: 475 NLLITGPNGSGKSSLFRVLGGLWPLVSGHIVKPGVGSDLNKEIFYVPQRPYTAVGTLRDQ 534
Query: 533 LIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592
LIYPLT+DQEVEPLT MVELLKNVDLEYLLDRYP E E+NWGDELSLGEQQRLGMARL
Sbjct: 535 LIYPLTADQEVEPLTDSRMVELLKNVDLEYLLDRYPSETEVNWGDELSLGEQQRLGMARL 594
Query: 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGE 652
FYHKPKFAILDECTSAVTTDMEERFCA V AMGTSCITISHRPALVAFHDVVLSLDGEG
Sbjct: 595 FYHKPKFAILDECTSAVTTDMEERFCANVLAMGTSCITISHRPALVAFHDVVLSLDGEGG 654
Query: 653 WRVHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEV 712
W VH +R+ SS T+ G + +K+ ET RQSDA AV++AF N KAQS +SEV
Sbjct: 655 WSVHHRREDSS--TELGNDTVKALETKRQSDAKAVQRAFAM--------NKKAQSDISEV 704
Query: 713 -IAASPIADHNVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSR 771
IA+SP N+ PQL R LP+RVA M KVLVPT+FDKQGA+LLAVAFLVVSR
Sbjct: 705 IIASSPSMKRNISPSAVPQLHGNTRALPMRVAAMCKVLVPTIFDKQGARLLAVAFLVVSR 764
Query: 772 TWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRI 831
TW+SDRIASLNGTTVK VLEQDKASF+RLIG+SV+QSAASSFIAPSIRHLTARLALG RI
Sbjct: 765 TWVSDRIASLNGTTVKLVLEQDKASFIRLIGISVIQSAASSFIAPSIRHLTARLALGGRI 824
Query: 832 RMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILW 891
R+TQHLLK+YLR N+FYKVF+M+SK++DADQRITHDLEKLTTDLSGLVTGMVKPSVDILW
Sbjct: 825 RLTQHLLKNYLRNNAFYKVFHMASKNVDADQRITHDLEKLTTDLSGLVTGMVKPSVDILW 884
Query: 892 FTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHA 951
FTWRMK LTG+RGVAILYAYMLLGLGFLR+VTP+FGDL S+EQQLEGTFRFMHERL HA
Sbjct: 885 FTWRMKLLTGRRGVAILYAYMLLGLGFLRTVTPDFGDLISQEQQLEGTFRFMHERLCTHA 944
Query: 952 ESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLY 1011
ESVAFFGGGAREKAM+ESRFRELL HS LLKKKWLFGILDDF+TKQLPHNVTWGLSL+Y
Sbjct: 945 ESVAFFGGGAREKAMVESRFRELLLHSKYLLKKKWLFGILDDFITKQLPHNVTWGLSLIY 1004
Query: 1012 AMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEE 1071
AMEHKGDRA V+TQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEE
Sbjct: 1005 AMEHKGDRASVTTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEE 1064
Query: 1072 LLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLV 1131
LLDAAQ D S D ISFSK+DI+TPSQK+LAR+L F+I G SLLV
Sbjct: 1065 LLDAAQSVRDVHS------------SDVISFSKVDIVTPSQKMLARELIFDIKHGGSLLV 1112
Query: 1132 TGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQ 1191
TGPNGSGKSS+FRVLRGLWP+ SG L++PS+ +DEE GSGCGIFYVPQRPYTCLGTLRDQ
Sbjct: 1113 TGPNGSGKSSIFRVLRGLWPIASGRLSRPSEVVDEEDGSGCGIFYVPQRPYTCLGTLRDQ 1172
Query: 1192 IIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLN 1251
IIYPLS EEAE++ LK++GK EK DT N+LD+ LK ILE VRL+YLLERE WDANL
Sbjct: 1173 IIYPLSCEEAEVKVLKMYGKDEKHADTRNLLDTRLKAILESVRLNYLLEREGSNWDANLK 1232
Query: 1252 WEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQR 1311
WEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEE LY LAKDMGIT VTSSQR
Sbjct: 1233 WEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEHLYGLAKDMGITVVTSSQR 1292
Query: 1312 PALIPFHSLELRLIDGEGNWELRTI 1336
PALIPFHS+ELRLIDGEGNW+LR I
Sbjct: 1293 PALIPFHSMELRLIDGEGNWKLRLI 1317
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357463369|ref|XP_003601966.1| ABC transporter D family member [Medicago truncatula] gi|355491014|gb|AES72217.1| ABC transporter D family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 2194 bits (5684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1082/1360 (79%), Positives = 1199/1360 (88%), Gaps = 30/1360 (2%)
Query: 1 MPSLQSLPLTEHGRGILSSRRKTILLASGILVAGGTAAYLKSRFSSKKPDAFGHYNGLGD 60
MPSLQ L T HG+ L+SRRK ILLASGIL+AGGTAAY++SRF K D FGH N +
Sbjct: 1 MPSLQLLKFTRHGQNFLASRRKAILLASGILIAGGTAAYMQSRFRVNKHDLFGHCNEQNN 60
Query: 61 SERKPDKAVANRSNIKKANQKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTAL 120
+ + V N S K QKKGG+KSLQVL AILLS+MG++G ++LLALV VVLRTAL
Sbjct: 61 DKEVKKEEVINDSTKPKNKQKKGGMKSLQVLTAILLSDMGQLGVKNLLALVVTVVLRTAL 120
Query: 121 SNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVT 180
SNRLAKVQGFLFRAAFLRR PLFF+LISENI+LCFLLST+HSTSKYITGTLSL FRK++T
Sbjct: 121 SNRLAKVQGFLFRAAFLRRAPLFFRLISENIILCFLLSTIHSTSKYITGTLSLHFRKVLT 180
Query: 181 KLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTW 240
KLIH+ YFENM YYKISHVDGRIT+PEQR+ASDVP+FCSELSE+VQDDL AVTDGLLYTW
Sbjct: 181 KLIHSHYFENMVYYKISHVDGRITNPEQRIASDVPKFCSELSEIVQDDLAAVTDGLLYTW 240
Query: 241 RLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESI 300
RLCSYASPKYVFWILAYVLGAG +RNFSP FGKLMS EQQLEG+YRQLHSRLRTH+ESI
Sbjct: 241 RLCSYASPKYVFWILAYVLGAGAAIRNFSPPFGKLMSTEQQLEGDYRQLHSRLRTHSESI 300
Query: 301 AFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFA 360
AFYGGE +EE+HIQ KFK L RHMR VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFF+
Sbjct: 301 AFYGGERREEAHIQHKFKTLVRHMRRVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFS 360
Query: 361 GNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVIS 420
GNL+PD+STLGRA+MLSNLRYHTSVIISLFQSLGTLSI +RRLNRLSGYADRI+ELM +S
Sbjct: 361 GNLRPDSSTLGRAEMLSNLRYHTSVIISLFQSLGTLSIGARRLNRLSGYADRIYELMAVS 420
Query: 421 RELSIEDK--SPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITG 478
RELS+ D+ S QR GSRN SEANYIEFS VKVVTPTGNVLV++L+L+VE GSNLLITG
Sbjct: 421 RELSLVDEKSSLQRQGSRNCISEANYIEFSNVKVVTPTGNVLVDDLSLRVEQGSNLLITG 480
Query: 479 PNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT 538
PNGSGKSSLFRVLGGLWPL+SGHI KPG+GSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT
Sbjct: 481 PNGSGKSSLFRVLGGLWPLISGHIVKPGIGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT 540
Query: 539 SDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598
S+QEVEPLT GMVELLKNVDLEYLLDRY PEKE+NWGDELSLGEQQRLGMARLFYHKPK
Sbjct: 541 SNQEVEPLTDHGMVELLKNVDLEYLLDRYLPEKEVNWGDELSLGEQQRLGMARLFYHKPK 600
Query: 599 FAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDK 658
FAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEG W VH +
Sbjct: 601 FAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHYR 660
Query: 659 RDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKK-------DSAFSNPKAQSYVSE 711
R+ SS T+ GI+ +K+SET RQ+DA AV++AF +KK DSAFS+ KA+SY+++
Sbjct: 661 REDSS--TEMGIDTMKASETKRQTDAKAVQRAFAMSKKIFIPFLQDSAFSSSKAESYIAD 718
Query: 712 VIAASPIADH-NVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVS 770
VI +SP +H N+P V PQL RILPLRVA MFKVLVPTVFDKQGAQLLAVA LVVS
Sbjct: 719 VIYSSPSTNHTNLPSTV-PQLHGNTRILPLRVAAMFKVLVPTVFDKQGAQLLAVALLVVS 777
Query: 771 RTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWR 830
RTW+SDRIASLNGTTVK+VLEQDKA+F+RLIG+SVLQSAASSFIAPSIRHLTARLALGWR
Sbjct: 778 RTWVSDRIASLNGTTVKFVLEQDKAAFIRLIGISVLQSAASSFIAPSIRHLTARLALGWR 837
Query: 831 IRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDIL 890
IR+TQHLLK+YLR N FYKVF+M+SKS+DADQRIT DLEKLTTDLSGLVTG+VKPSVDIL
Sbjct: 838 IRLTQHLLKNYLRSNVFYKVFHMASKSVDADQRITQDLEKLTTDLSGLVTGLVKPSVDIL 897
Query: 891 WFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAH 950
WFTWRMK LTGQRGVAILYAYMLLGLGFLR+VTP+FGDL S+EQQLEG FRFMHERL H
Sbjct: 898 WFTWRMKLLTGQRGVAILYAYMLLGLGFLRTVTPDFGDLISQEQQLEGIFRFMHERLCTH 957
Query: 951 AESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLL 1010
AESVAFFGGGAREKAM+ESRF +LL HS LLKKK LFGILDDF+TKQLPHNVTW LSLL
Sbjct: 958 AESVAFFGGGAREKAMVESRFSDLLIHSQYLLKKKCLFGILDDFITKQLPHNVTWLLSLL 1017
Query: 1011 YAMEHKGDRALVST------------QGELAHALRFLASVVSQSFLAFGDILELHRKFVE 1058
YAMEHKGDRA++ST GELAHALRFLASVVSQSFLAFGDILEL+RK VE
Sbjct: 1018 YAMEHKGDRAVISTLGRIVGLFSHYITGELAHALRFLASVVSQSFLAFGDILELNRKLVE 1077
Query: 1059 LSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDY--QDSISFSKLDIITPSQKLLA 1116
LSGG+NRIFELEELLDAA G+ G ++TDY +D ISFSK++I+TPSQK+LA
Sbjct: 1078 LSGGVNRIFELEELLDAAHSGEFINGGPIS---SATDYHSKDVISFSKVNIVTPSQKMLA 1134
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176
R+LT ++ G+SLLVTGPNGSGKSS+FRVLRGLWP+ SG ++PS+ +D++ GSGC IFY
Sbjct: 1135 RELTCDVELGRSLLVTGPNGSGKSSIFRVLRGLWPIASGRFSRPSEDLDQDVGSGCSIFY 1194
Query: 1177 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS 1236
VPQRPYTCLGTLRDQIIYPLSREEAELRALK++GKGEK DT +LD +L+ ILE VRL+
Sbjct: 1195 VPQRPYTCLGTLRDQIIYPLSREEAELRALKMYGKGEKHPDTVKLLDKHLEVILENVRLN 1254
Query: 1237 YLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYR 1296
YLLER+ GWDANLNWED LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEE LY
Sbjct: 1255 YLLERDTSGWDANLNWEDTLSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEHLYG 1314
Query: 1297 LAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNWELRTI 1336
LAK M ITF+TSSQRPALIP+HS+ELRLIDGEGNW+LR+I
Sbjct: 1315 LAKKMEITFITSSQRPALIPYHSMELRLIDGEGNWQLRSI 1354
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18478510|dbj|BAB84550.1| peroxisomal ABC transporter [Arabidopsis thaliana] gi|18478515|dbj|BAB84551.1| peroxisomal ABC transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2180 bits (5650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1064/1339 (79%), Positives = 1187/1339 (88%), Gaps = 10/1339 (0%)
Query: 1 MPSLQSLPLTEHGRGILSSRRKTILLASGILVAGGTAAYLKSRFSSKKPDAFGHYNGLGD 60
MPSLQ L LTE GRG+++SRRK+ILLA+GI+ AGGTA YLKSR +S++PD+ NG D
Sbjct: 1 MPSLQLLQLTERGRGLVASRRKSILLAAGIVAAGGTAVYLKSRVASRRPDSSRLCNGQSD 60
Query: 61 SERKPDKAVANRSN--IKKANQKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRT 118
+ +K A N I +K GGLKSLQVL AILLS+MGKMGARDLLALV VV RT
Sbjct: 61 DDEALEKLTATDQNAKITTKKKKGGGLKSLQVLTAILLSQMGKMGARDLLALVATVVFRT 120
Query: 119 ALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKI 178
ALSNRLAKVQGFLFRAAFLRR PLF +LISENI+LCF+LST+HSTSKYITG LSL+FRKI
Sbjct: 121 ALSNRLAKVQGFLFRAAFLRRAPLFLRLISENIMLCFMLSTLHSTSKYITGALSLRFRKI 180
Query: 179 VTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLY 238
+TK+IH+ YFENM YYKISHVDGRITHPEQR+ASDVPRF SELS+L+ DDLTAVTDG+LY
Sbjct: 181 LTKIIHSHYFENMVYYKISHVDGRITHPEQRIASDVPRFSSELSDLILDDLTAVTDGILY 240
Query: 239 TWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAE 298
WRLCSYASPKY+FWILAYVLGAGT +RNFSP+FGKLMSKEQQLEGEYRQLHSRLRTH+E
Sbjct: 241 AWRLCSYASPKYIFWILAYVLGAGTAIRNFSPSFGKLMSKEQQLEGEYRQLHSRLRTHSE 300
Query: 299 SIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPF 358
SIAFYGGE +EESHIQQKFK L HM VLHDHWWFGMIQDFLLKYLGATVAVILIIEPF
Sbjct: 301 SIAFYGGETREESHIQQKFKNLVSHMSHVLHDHWWFGMIQDFLLKYLGATVAVILIIEPF 360
Query: 359 FAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMV 418
F+G+L+PD STLGRA+MLSN+RYHTSVIISLFQ+LGTLSISSRRLNRLSGYADRIHELM
Sbjct: 361 FSGHLRPDDSTLGRAEMLSNIRYHTSVIISLFQALGTLSISSRRLNRLSGYADRIHELMA 420
Query: 419 ISRELSIEDKSP-QRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLIT 477
+SRELS +DKS QRN SRNY SEANY+EFS VKVVTPTGNVLVE+LTL+VE GSNLLIT
Sbjct: 421 VSRELSGDDKSSFQRNRSRNYLSEANYVEFSDVKVVTPTGNVLVEDLTLRVEQGSNLLIT 480
Query: 478 GPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPL 537
GPNGSGKSSLFRVLGGLWPLVSGHI KPGVGSDLNKEIFYVPQRPY AVGTLRDQLIYPL
Sbjct: 481 GPNGSGKSSLFRVLGGLWPLVSGHIVKPGVGSDLNKEIFYVPQRPYMAVGTLRDQLIYPL 540
Query: 538 TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597
TS QE E LT GMVELLKNVDLEYLLDRY PEKE+NWGDELSLGEQQRLGMARLFYHKP
Sbjct: 541 TSGQESELLTEIGMVELLKNVDLEYLLDRYQPEKEVNWGDELSLGEQQRLGMARLFYHKP 600
Query: 598 KFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHD 657
KFAILDECTSAVTTDMEERF AKVRAMGTSCITISHRPALVAFHDVVLSLDGEG W VH
Sbjct: 601 KFAILDECTSAVTTDMEERFAAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHY 660
Query: 658 KRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASP 717
KRD S+++T + I+ +KSS+TDRQ+DAM V++AF A+K+SA +N KAQSY +++IA SP
Sbjct: 661 KRDDSALLTDAEIDSVKSSDTDRQNDAMVVQRAFAAARKESA-TNSKAQSYQTQLIARSP 719
Query: 718 IADHNVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDR 777
+ D +V LP FPQ +++ R LP RVA M VL+PT+FDKQGAQLLAVA LVVSRT ISDR
Sbjct: 720 VVDKSVVLPRFPQPQTSQRALPSRVAAMLNVLIPTIFDKQGAQLLAVACLVVSRTLISDR 779
Query: 778 IASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHL 837
IASLNGTTVKYVLEQDKA+FVRLIG+SVLQS ASS IAPS+RHLT RLALGWRIR+TQHL
Sbjct: 780 IASLNGTTVKYVLEQDKAAFVRLIGLSVLQSGASSIIAPSLRHLTQRLALGWRIRLTQHL 839
Query: 838 LKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMK 897
L++YLR N+FYKVF+MS SIDADQR+T DLEKLT DLSGL+TGMVKPSVDILWFTWRMK
Sbjct: 840 LRNYLRNNAFYKVFHMSGNSIDADQRLTRDLEKLTADLSGLLTGMVKPSVDILWFTWRMK 899
Query: 898 ALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFF 957
LTGQRGVAILY YMLLGLGFLR V P+FGDL EQQLEG FRFMHERL HAES+AFF
Sbjct: 900 LLTGQRGVAILYTYMLLGLGFLRRVAPDFGDLAGEEQQLEGKFRFMHERLNTHAESIAFF 959
Query: 958 GGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKG 1017
GGGAREKAM++ +FR LL+HSL+LL+KKWL+GILDDFVTKQLP+NVTWGLSLLYA+EHKG
Sbjct: 960 GGGAREKAMVDKKFRALLDHSLMLLRKKWLYGILDDFVTKQLPNNVTWGLSLLYALEHKG 1019
Query: 1018 DRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQ 1077
DRALVSTQGELAHALR+LASVVSQSF+AFGDILELH+KF+ELSGGINRIFEL+E LDA+Q
Sbjct: 1020 DRALVSTQGELAHALRYLASVVSQSFMAFGDILELHKKFLELSGGINRIFELDEFLDASQ 1079
Query: 1078 PGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGS 1137
G +S+++ + D QD +SFS++DIITP+QKL+A +L+ EIV GKSLLVTGPNGS
Sbjct: 1080 SG-----VTSENQTSRLDSQDLLSFSEVDIITPAQKLMASKLSCEIVSGKSLLVTGPNGS 1134
Query: 1138 GKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLS 1197
GK+SVFRVLR +WP V G LTKPS I +E GSG G+F+VPQRPYTCLGTLRDQIIYPLS
Sbjct: 1135 GKTSVFRVLRDIWPTVCGRLTKPSLDI-KELGSGNGMFFVPQRPYTCLGTLRDQIIYPLS 1193
Query: 1198 REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 1257
+EEAE RA KL+ GE + +ILDS+LKTILE VRL YLLER+ GWDA NWEDILS
Sbjct: 1194 KEEAEKRAAKLYTSGESSTEAGSILDSHLKTILENVRLVYLLERDVGGWDATTNWEDILS 1253
Query: 1258 LGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPF 1317
LGEQQRLGMARLFFH+PKFG+LDECTNATSVDVEEQLYR+A+DMG+TF+TSSQRPALIPF
Sbjct: 1254 LGEQQRLGMARLFFHRPKFGVLDECTNATSVDVEEQLYRVARDMGVTFITSSQRPALIPF 1313
Query: 1318 HSLELRLIDGEGNWELRTI 1336
HSLELRLIDGEGNWELR+I
Sbjct: 1314 HSLELRLIDGEGNWELRSI 1332
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18420546|ref|NP_568072.1| ABC transporter D family member 1 [Arabidopsis thaliana] gi|75332181|sp|Q94FB9.1|AB1D_ARATH RecName: Full=ABC transporter D family member 1; Short=ABC transporter ABCD.1; Short=AtABCD1; AltName: Full=Peroxisomal ABC transporter 1; Short=AtPXA1; AltName: Full=Protein ACETATE NON-UTILIZING 2; AltName: Full=Protein COMATOSE; AltName: Full=Protein PEROXISOME DEFECTIVE 3; Short=Ped3p gi|15320529|gb|AAK95343.1|AF378120_1 peroxisomal ABC transporter PXA1 [Arabidopsis thaliana] gi|20803766|emb|CAC85290.1| ABC transporter [Arabidopsis thaliana] gi|332661726|gb|AEE87126.1| ABC transporter D family member 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2180 bits (5650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1064/1339 (79%), Positives = 1187/1339 (88%), Gaps = 10/1339 (0%)
Query: 1 MPSLQSLPLTEHGRGILSSRRKTILLASGILVAGGTAAYLKSRFSSKKPDAFGHYNGLGD 60
MPSLQ L LTE GRG+++SRRK+ILLA+GI+ AGGTA YLKSR +S++PD+ NG D
Sbjct: 1 MPSLQLLQLTERGRGLVASRRKSILLAAGIVAAGGTAVYLKSRVASRRPDSSRLCNGQSD 60
Query: 61 SERKPDKAVANRSN--IKKANQKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRT 118
+ +K A N I +K GGLKSLQVL AILLS+MGKMGARDLLALV VV RT
Sbjct: 61 DDETLEKLTATDQNAKITTKKKKGGGLKSLQVLTAILLSQMGKMGARDLLALVATVVFRT 120
Query: 119 ALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKI 178
ALSNRLAKVQGFLFRAAFLRR PLF +LISENI+LCF+LST+HSTSKYITG LSL+FRKI
Sbjct: 121 ALSNRLAKVQGFLFRAAFLRRAPLFLRLISENIMLCFMLSTLHSTSKYITGALSLRFRKI 180
Query: 179 VTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLY 238
+TK+IH+ YFENM YYKISHVDGRITHPEQR+ASDVPRF SELS+L+ DDLTAVTDG+LY
Sbjct: 181 LTKIIHSHYFENMVYYKISHVDGRITHPEQRIASDVPRFSSELSDLILDDLTAVTDGILY 240
Query: 239 TWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAE 298
WRLCSYASPKY+FWILAYVLGAGT +RNFSP+FGKLMSKEQQLEGEYRQLHSRLRTH+E
Sbjct: 241 AWRLCSYASPKYIFWILAYVLGAGTAIRNFSPSFGKLMSKEQQLEGEYRQLHSRLRTHSE 300
Query: 299 SIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPF 358
SIAFYGGE +EESHIQQKFK L HM VLHDHWWFGMIQDFLLKYLGATVAVILIIEPF
Sbjct: 301 SIAFYGGETREESHIQQKFKNLVSHMSHVLHDHWWFGMIQDFLLKYLGATVAVILIIEPF 360
Query: 359 FAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMV 418
F+G+L+PD STLGRA+MLSN+RYHTSVIISLFQ+LGTLSISSRRLNRLSGYADRIHELM
Sbjct: 361 FSGHLRPDDSTLGRAEMLSNIRYHTSVIISLFQALGTLSISSRRLNRLSGYADRIHELMA 420
Query: 419 ISRELSIEDKSP-QRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLIT 477
+SRELS +DKS QRN SRNY SEANY+EFS VKVVTPTGNVLVE+LTL+VE GSNLLIT
Sbjct: 421 VSRELSGDDKSSFQRNRSRNYLSEANYVEFSDVKVVTPTGNVLVEDLTLRVEQGSNLLIT 480
Query: 478 GPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPL 537
GPNGSGKSSLFRVLGGLWPLVSGHI KPGVGSDLNKEIFYVPQRPY AVGTLRDQLIYPL
Sbjct: 481 GPNGSGKSSLFRVLGGLWPLVSGHIVKPGVGSDLNKEIFYVPQRPYMAVGTLRDQLIYPL 540
Query: 538 TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597
TS QE E LT GMVELLKNVDLEYLLDRY PEKE+NWGDELSLGEQQRLGMARLFYHKP
Sbjct: 541 TSGQESELLTEIGMVELLKNVDLEYLLDRYQPEKEVNWGDELSLGEQQRLGMARLFYHKP 600
Query: 598 KFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHD 657
KFAILDECTSAVTTDMEERF AKVRAMGTSCITISHRPALVAFHDVVLSLDGEG W VH
Sbjct: 601 KFAILDECTSAVTTDMEERFAAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHY 660
Query: 658 KRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASP 717
KRD S+++T + I+ +KSS+TDRQ+DAM V++AF A+K+SA +N KAQSY +++IA SP
Sbjct: 661 KRDDSALLTDAEIDSVKSSDTDRQNDAMVVQRAFAAARKESA-TNSKAQSYQTQLIARSP 719
Query: 718 IADHNVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDR 777
+ D +V LP FPQ +++ R LP RVA M VL+PT+FDKQGAQLLAVA LVVSRT ISDR
Sbjct: 720 VVDKSVVLPRFPQPQTSQRALPSRVAAMLNVLIPTIFDKQGAQLLAVACLVVSRTLISDR 779
Query: 778 IASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHL 837
IASLNGTTVKYVLEQDKA+FVRLIG+SVLQS ASS IAPS+RHLT RLALGWRIR+TQHL
Sbjct: 780 IASLNGTTVKYVLEQDKAAFVRLIGLSVLQSGASSIIAPSLRHLTQRLALGWRIRLTQHL 839
Query: 838 LKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMK 897
L++YLR N+FYKVF+MS SIDADQR+T DLEKLT DLSGL+TGMVKPSVDILWFTWRMK
Sbjct: 840 LRNYLRNNAFYKVFHMSGNSIDADQRLTRDLEKLTADLSGLLTGMVKPSVDILWFTWRMK 899
Query: 898 ALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFF 957
LTGQRGVAILY YMLLGLGFLR V P+FGDL EQQLEG FRFMHERL HAES+AFF
Sbjct: 900 LLTGQRGVAILYTYMLLGLGFLRRVAPDFGDLAGEEQQLEGKFRFMHERLNTHAESIAFF 959
Query: 958 GGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKG 1017
GGGAREKAM++ +FR LL+HSL+LL+KKWL+GILDDFVTKQLP+NVTWGLSLLYA+EHKG
Sbjct: 960 GGGAREKAMVDKKFRALLDHSLMLLRKKWLYGILDDFVTKQLPNNVTWGLSLLYALEHKG 1019
Query: 1018 DRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQ 1077
DRALVSTQGELAHALR+LASVVSQSF+AFGDILELH+KF+ELSGGINRIFEL+E LDA+Q
Sbjct: 1020 DRALVSTQGELAHALRYLASVVSQSFMAFGDILELHKKFLELSGGINRIFELDEFLDASQ 1079
Query: 1078 PGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGS 1137
G +S+++ + D QD +SFS++DIITP+QKL+A +L+ EIV GKSLLVTGPNGS
Sbjct: 1080 SG-----VTSENQTSRLDSQDLLSFSEVDIITPAQKLMASKLSCEIVSGKSLLVTGPNGS 1134
Query: 1138 GKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLS 1197
GK+SVFRVLR +WP V G LTKPS I +E GSG G+F+VPQRPYTCLGTLRDQIIYPLS
Sbjct: 1135 GKTSVFRVLRDIWPTVCGRLTKPSLDI-KELGSGNGMFFVPQRPYTCLGTLRDQIIYPLS 1193
Query: 1198 REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 1257
+EEAE RA KL+ GE + +ILDS+LKTILE VRL YLLER+ GWDA NWEDILS
Sbjct: 1194 KEEAEKRAAKLYTSGESSTEAGSILDSHLKTILENVRLVYLLERDVGGWDATTNWEDILS 1253
Query: 1258 LGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPF 1317
LGEQQRLGMARLFFH+PKFG+LDECTNATSVDVEEQLYR+A+DMG+TF+TSSQRPALIPF
Sbjct: 1254 LGEQQRLGMARLFFHRPKFGVLDECTNATSVDVEEQLYRVARDMGVTFITSSQRPALIPF 1313
Query: 1318 HSLELRLIDGEGNWELRTI 1336
HSLELRLIDGEGNWELR+I
Sbjct: 1314 HSLELRLIDGEGNWELRSI 1332
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255549548|ref|XP_002515826.1| peroxisomal abc transporter, putative [Ricinus communis] gi|223545055|gb|EEF46568.1| peroxisomal abc transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2177 bits (5642), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1084/1328 (81%), Positives = 1185/1328 (89%), Gaps = 15/1328 (1%)
Query: 21 RKTILLASGILVAGGTAA-YLKSRFSSKKPDAFGHYNGLGDSERKPDKAVANRSN-IKKA 78
RK++LLA+G+LVAGGTAA Y++SR ++ D+F YNG D D + + + +
Sbjct: 13 RKSLLLATGVLVAGGTAAAYVQSR---RRSDSFVQYNGRKDDIGNSDNNNNDNDDNVVRK 69
Query: 79 NQKK---------GGLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQG 129
N+ K G LKSL +LAA+LLSEMGKMGARDL A+V I V RTALSNRLAKVQG
Sbjct: 70 NEDKVKKKSTQKKGTLKSLHLLAAVLLSEMGKMGARDLFAMVAIAVARTALSNRLAKVQG 129
Query: 130 FLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFE 189
FLFRAAFLRR PLFF+LISENILLCFL+STMHSTSKY+TGTLSL FRKI+TK IH YFE
Sbjct: 130 FLFRAAFLRRAPLFFRLISENILLCFLVSTMHSTSKYVTGTLSLCFRKILTKRIHAHYFE 189
Query: 190 NMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPK 249
NMAYYKISHVDGRIT+PEQR+ASDVPRFCSELSELVQDDLTAVTDG+LYTWRLCSY SPK
Sbjct: 190 NMAYYKISHVDGRITNPEQRIASDVPRFCSELSELVQDDLTAVTDGILYTWRLCSYTSPK 249
Query: 250 YVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKE 309
Y FWILAYVLGAGTM+R FSPAFGKLMSKEQQLEGEYR+LHSRLRTHAESIAFYGGE +E
Sbjct: 250 YFFWILAYVLGAGTMIRKFSPAFGKLMSKEQQLEGEYRRLHSRLRTHAESIAFYGGERRE 309
Query: 310 ESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTST 369
E HIQ+KFK L +HMRVVLH+HWWFGMIQDFL+KYLGATVAVILIIEPFFAG+L+PD ST
Sbjct: 310 EFHIQEKFKNLVKHMRVVLHEHWWFGMIQDFLVKYLGATVAVILIIEPFFAGHLRPDAST 369
Query: 370 LGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDK- 428
LGRA MLSNLRYHTSVIISLFQSLGTLS SSRRLNRLSGYADRIHEL+ ISREL+ +DK
Sbjct: 370 LGRATMLSNLRYHTSVIISLFQSLGTLSTSSRRLNRLSGYADRIHELIAISRELNNDDKT 429
Query: 429 SPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLF 488
S QR+ SRNYFSE++Y+EFSGVKVVTPTGNVLVE+LTLKVE GSNLLITGPNGSGKSSLF
Sbjct: 430 SLQRSRSRNYFSESDYVEFSGVKVVTPTGNVLVEDLTLKVESGSNLLITGPNGSGKSSLF 489
Query: 489 RVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTH 548
RVLGGLWPLVSG+I KPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT DQEVEPLT
Sbjct: 490 RVLGGLWPLVSGYIVKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTVDQEVEPLTR 549
Query: 549 GGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
GM+ELLKNVDLEYLLDRYPPE+E+NWG+ELSLGEQQRLGMARLFYHKPKFAILDECTSA
Sbjct: 550 SGMLELLKNVDLEYLLDRYPPEQEVNWGEELSLGEQQRLGMARLFYHKPKFAILDECTSA 609
Query: 609 VTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSSVVTKS 668
VTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEG W+V KR + +T++
Sbjct: 610 VTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWKVSYKRKDTPALTEA 669
Query: 669 GINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHNVPLPVF 728
G N+++ S+TDRQSDAM V++AF T DSAFS+ KAQSY+SEVIAASP AD LP
Sbjct: 670 GTNVVRISDTDRQSDAMVVQRAFATIDTDSAFSSSKAQSYISEVIAASPSADSRHQLPTV 729
Query: 729 PQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKY 788
PQL+ AP+ L LRVA M K+LVPT+ D+QGAQLLAVAFLVVSRTW+SDRIASLNGTTVKY
Sbjct: 730 PQLQRAPKALALRVAAMSKILVPTLLDRQGAQLLAVAFLVVSRTWVSDRIASLNGTTVKY 789
Query: 789 VLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFY 848
VLEQDK+SF+RLIG+S+LQSAASSFIAPS+RHLTARLALGWRIR+T HLL++YLR N+FY
Sbjct: 790 VLEQDKSSFIRLIGISILQSAASSFIAPSLRHLTARLALGWRIRLTGHLLQNYLRNNAFY 849
Query: 849 KVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAIL 908
KVF MSSK+IDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMK LTGQRGVAIL
Sbjct: 850 KVFYMSSKNIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKLLTGQRGVAIL 909
Query: 909 YAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIE 968
YAYMLLGLGFLR+VTP+FGDL SR QQLEG FRFMHERLR HAESVAFFGGGAREK+MIE
Sbjct: 910 YAYMLLGLGFLRTVTPDFGDLASRAQQLEGMFRFMHERLRTHAESVAFFGGGAREKSMIE 969
Query: 969 SRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGEL 1028
+RFRELL+HSLLLLKKKWL+GILDDFVTKQLPHNVTWGLSLLYA+EHKGDRALVSTQGEL
Sbjct: 970 ARFRELLDHSLLLLKKKWLYGILDDFVTKQLPHNVTWGLSLLYAVEHKGDRALVSTQGEL 1029
Query: 1029 AHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQ 1088
AHALRFLASVVSQSFLAFGDILELH+KF+ELSG INRIFEL+ELLDAAQ GD S
Sbjct: 1030 AHALRFLASVVSQSFLAFGDILELHKKFLELSGSINRIFELDELLDAAQSGDWSTDKLSP 1089
Query: 1089 HKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRG 1148
K + +D+I F ++DIITP+QKLLAR+LT +IV GKSLLVTGPNGSGKSSVFRVLRG
Sbjct: 1090 RKESDLHVKDAICFEEVDIITPAQKLLARRLTCDIVQGKSLLVTGPNGSGKSSVFRVLRG 1149
Query: 1149 LWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKL 1208
LWP+VSG LTKPSQHI +E GCGIFYVPQRPYTCLGTLRDQIIYPLS +EAE LKL
Sbjct: 1150 LWPLVSGRLTKPSQHIGKETEYGCGIFYVPQRPYTCLGTLRDQIIYPLSHDEAEHMTLKL 1209
Query: 1209 HGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMAR 1268
G +K T + LD LKTILE VRL+YLLEREE GWDANLNWEDILSLGEQQRLGMAR
Sbjct: 1210 SGVDKKSAHTRSFLDERLKTILENVRLNYLLEREEGGWDANLNWEDILSLGEQQRLGMAR 1269
Query: 1269 LFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGE 1328
LFFHKP+FGILDECTNATSVDVEEQLYRLAKDM IT VTSSQRPALIPFHS+ELR IDGE
Sbjct: 1270 LFFHKPEFGILDECTNATSVDVEEQLYRLAKDMDITVVTSSQRPALIPFHSVELRFIDGE 1329
Query: 1329 GNWELRTI 1336
GNWELRTI
Sbjct: 1330 GNWELRTI 1337
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1338 | ||||||
| UNIPROTKB|Q5F4B9 | 660 | ABCD3 "Uncharacterized protein | 0.402 | 0.816 | 0.354 | 1.3e-82 | |
| RGD|2007 | 659 | Abcd3 "ATP-binding cassette, s | 0.425 | 0.863 | 0.337 | 1.6e-82 | |
| UNIPROTKB|A7Z038 | 656 | ABCD3 "Uncharacterized protein | 0.429 | 0.876 | 0.343 | 2.7e-82 | |
| ZFIN|ZDB-GENE-050517-27 | 766 | abcd1 "ATP-binding cassette, s | 0.160 | 0.280 | 0.484 | 6.9e-82 | |
| MGI|MGI:1349216 | 659 | Abcd3 "ATP-binding cassette, s | 0.425 | 0.863 | 0.335 | 9.5e-82 | |
| WB|WBGene00004058 | 665 | pmp-1 [Caenorhabditis elegans | 0.408 | 0.821 | 0.329 | 9.5e-82 | |
| WB|WBGene00004061 | 734 | pmp-4 [Caenorhabditis elegans | 0.428 | 0.780 | 0.286 | 7e-62 | |
| ZFIN|ZDB-GENE-050517-29 | 659 | abcd3b "ATP-binding cassette, | 0.456 | 0.927 | 0.333 | 1.5e-80 | |
| ZFIN|ZDB-GENE-040426-2868 | 656 | abcd3a "ATP-binding cassette, | 0.432 | 0.882 | 0.336 | 1.5e-80 | |
| DICTYBASE|DDB_G0293194 | 741 | abcD2 "ABC transporter D famil | 0.156 | 0.283 | 0.465 | 1.9e-80 |
| UNIPROTKB|Q5F4B9 ABCD3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 835 (299.0 bits), Expect = 1.3e-82, P = 1.3e-82
Identities = 201/567 (35%), Positives = 306/567 (53%)
Query: 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCF-LLSTMHSTSK 165
LL + ++V+RT + + G + +A + R F+ N + +S +++ K
Sbjct: 88 LLLIAVMLVVRTYCDIWMIQ-NGTVIESAIIGRSRKDFKKYLFNFIAAMPAISLVNNFLK 146
Query: 166 YITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELV 225
Y L L FR +TK ++ Y + YYK+ ++D RI +P+Q L DV +FC+ + +L
Sbjct: 147 YGLNELKLCFRVRLTKYLYEEYLKAYTYYKMGNLDNRIANPDQLLTQDVEKFCNSVVDLY 206
Query: 226 QDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGE 285
+ D +LY ++L S + ++AY++ +G + GK+ EQ+ EGE
Sbjct: 207 SNLSKPFLDIVLYIFKLTSAIGAQGPASMMAYLIVSGFFLTRLRRPIGKMTIIEQKYEGE 266
Query: 286 YRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYL 345
YR ++SRL T++E IAFY G +E+ I + F+ L H+ + + G I + KYL
Sbjct: 267 YRYVNSRLITNSEEIAFYNGNLREKQTIHRTFRKLVEHLHNFILFRFSMGFIDTIIAKYL 326
Query: 346 GATVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTXXXXXXXXX 404
V +++ PF NL P A++L + +++ + Q+LG
Sbjct: 327 ATVVGYLVVSRPFL--NLADPRHQNSTHAELLEDYYQSGRMLLRMSQALGRIVLAGREMT 384
Query: 405 XXXGYADRIHELMVISRELS----------------IEDKSPQRNGSRNYFSEANYIEFS 448
G+ RI ELM + ++L+ I+ P GS + N I+F
Sbjct: 385 RLAGFTARITELMQVLKDLNSGKYQRTMVSQEKDADIKQALPLIPGSGEIINTDNLIKFD 444
Query: 449 GVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG 508
V +VTP G+VL+++L +V G+N+LI GPNG GKSSLFRVLG LWPL G + KP G
Sbjct: 445 HVPLVTPNGDVLIQDLNFEVRSGANVLICGPNGCGKSSLFRVLGELWPLFGGRLTKPVRG 504
Query: 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLT-SDQEVEPLTHGGMVELLKNVDLEYLLDRY 567
++FYVPQRPY +GTLRDQ+IYP T DQ + ++ + E L NV L +L+R
Sbjct: 505 -----KLFYVPQRPYMTLGTLRDQVIYPDTLEDQRKKGISDQVLKEYLDNVQLGQILERE 559
Query: 568 PPEKEI-NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGT 626
+ +W D LS GE+QR+ MARLFYHKP+FAILDECTSAV+ D+E + R +G
Sbjct: 560 GGWDSVQDWMDVLSGGEKQRMAMARLFYHKPQFAILDECTSAVSVDVEGYIYSHCRKVGI 619
Query: 627 SCITISHRPALVAFHDVVLSLDGEGEW 653
+ T+SHR +L HD L +DG G +
Sbjct: 620 TLFTVSHRKSLWKHHDFYLHMDGRGNY 646
|
|
| RGD|2007 Abcd3 "ATP-binding cassette, subfamily D (ALD), member 3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 834 (298.6 bits), Expect = 1.6e-82, P = 1.6e-82
Identities = 204/605 (33%), Positives = 321/605 (53%)
Query: 79 NQKKGGLKSLQVLAAILLSEMGK----MGARDLLALVG-IVVLRTALSNR----LAKVQ- 128
N +K G K V+ + LS + + M R G ++++ L +R + +Q
Sbjct: 47 NNEKEGKKERAVVDKVFLSRLSQILKIMVPRTFCKETGYLILIAVMLVSRTYCDVWMIQN 106
Query: 129 GFLFRAAFLRRVPLFFQLISENILLCF-LLSTMHSTSKYITGTLSLQFRKIVTKLIHTRY 187
G L + + R F+ N + L+S +++ KY L L FR +T+ ++ Y
Sbjct: 107 GTLIESGIIGRSSKDFKRYLFNFIAAMPLISLVNNFLKYGLNELKLCFRVRLTRYLYEEY 166
Query: 188 FENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYAS 247
+ YYK+ ++D RI +P+Q L DV +FC+ + +L + D +LY ++L S
Sbjct: 167 LQAFTYYKMGNLDNRIANPDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIG 226
Query: 248 PKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGEN 307
+ ++AY+L +G + GK+ EQ+ EGEYR ++SRL T++E IAFY G
Sbjct: 227 AQGPASMMAYLLVSGLFLTRLRRPIGKMTIMEQKYEGEYRFVNSRLITNSEEIAFYNGNK 286
Query: 308 KEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDT 367
+E+ I F+ L H+ + + G I + KY+ V +++ PF P
Sbjct: 287 REKQTIHSVFRKLVEHLHNFIFFRFSMGFIDSIIAKYIATVVGYLVVSRPFL-DLAHPRH 345
Query: 368 STLGRAKMLSNLRYHTSVIISLFQSLGTXXXXXXXXXXXXGYADRIHELMVISREL---- 423
+++L + +++ + Q+LG G+ RI ELM + ++L
Sbjct: 346 LHSTHSELLEDYYQSGRMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNHGK 405
Query: 424 ------SIEDK-------SPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEP 470
S +DK SP G+ + N I+F V + TP G++L+++L+ +V
Sbjct: 406 YERTMVSQQDKGIEGAQASPLIPGAGEIINADNIIKFDHVPLATPNGDILIQDLSFEVRS 465
Query: 471 GSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLR 530
G+N+LI GPNG GKSSLFRVLG LWPL GH+ KP G ++FYVPQRPY +GTLR
Sbjct: 466 GANVLICGPNGCGKSSLFRVLGELWPLFGGHLTKPERG-----KLFYVPQRPYMTLGTLR 520
Query: 531 DQLIYPL-TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI-NWGDELSLGEQQRLG 588
DQ+IYP DQ+ + ++ + L NV L ++L+R + +W D LS GE+QR+
Sbjct: 521 DQVIYPDGKEDQKKKGISDQVLKGYLDNVQLGHILEREGGWDSVQDWMDVLSGGEKQRMA 580
Query: 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLD 648
MARLFYHKP+FAILDECTSAV+ D+E+ + R +G + T+SHR +L H+ L +D
Sbjct: 581 MARLFYHKPQFAILDECTSAVSVDVEDYIYSHCRKVGITLFTVSHRKSLWKHHEYYLHMD 640
Query: 649 GEGEW 653
G G +
Sbjct: 641 GRGNY 645
|
|
| UNIPROTKB|A7Z038 ABCD3 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 832 (297.9 bits), Expect = 2.7e-82, P = 2.7e-82
Identities = 211/615 (34%), Positives = 330/615 (53%)
Query: 736 RILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKY-VLEQDK 794
R+ R+ + K++VP F K+ L+ +A ++VSRT+ D NGT ++ ++ + +
Sbjct: 61 RVFFSRLMRILKIMVPKTFCKETGYLILIAVMLVSRTFC-DVWMIQNGTLIESGIIGRSR 119
Query: 795 ASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMS 854
F + + + S + ++ L L +R+R+T++L + YL+ ++YK+ N+
Sbjct: 120 KDFKKYLFNFIAAMPLISLVNNFLKFGLNELKLCFRVRLTKYLYEEYLQAFTYYKMGNLD 179
Query: 855 SKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLL 914
++ + DQ +T D+EK + L + + KP +DI+ + +R+ + G +G A + AY+L+
Sbjct: 180 NRIANPDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFRLTSAIGAQGPASMMAYLLV 239
Query: 915 GLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFREX 974
FL + G +T EQ+LEG +R+++ RL ++E VAF+ G REK I S F++
Sbjct: 240 SGLFLTRIRRPIGKMTITEQKLEGEYRYVNSRLITNSEEVAFYNGNKREKQTIHSVFQKL 299
Query: 975 XXXXXXXXXXXXXXXXXDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRF 1034
D + K L V + + ++ R L S+ EL
Sbjct: 300 VEHLHNFILFRFSMGFIDSIIAKYLATVVGYLVVSRPFLDLAHPRHLKSSHSELLEDYYQ 359
Query: 1035 LASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNST 1094
++ + A G I+ R+ L+G RI EL ++L G E + SQ + +
Sbjct: 360 SGRMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNQGKYERTMVSQQEKGAQ 419
Query: 1095 DYQ-----------DSI-SFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSV 1142
D D+I F + + TP+ +L R L FE+ G ++L+ GPNG GKSS+
Sbjct: 420 DIPLIPGIGEIINTDNIIKFDHVPLATPNGDILIRDLNFEVRSGANVLICGPNGCGKSSL 479
Query: 1143 FRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAE 1202
FRVL LWP+ G LTKP E G +FYVPQRPY LGTLRDQ+IYP +E+ +
Sbjct: 480 FRVLGELWPLFGGRLTKP------ERGK---LFYVPQRPYMTLGTLRDQVIYPDGKEDQK 530
Query: 1203 LRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQ 1262
KG I D LK L+ V+LS++LERE GWD+ +W D+LS GE+Q
Sbjct: 531 K-------KG--------ISDLVLKEYLDNVQLSHILEREG-GWDSVQDWMDVLSGGEKQ 574
Query: 1263 RLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLEL 1322
R+ MARLF+HKP+F ILDECT+A SVDVE+ +Y +++GIT T S R +L H L
Sbjct: 575 RMAMARLFYHKPQFAILDECTSAVSVDVEDYIYSHCREVGITLFTVSHRKSLWKHHEYYL 634
Query: 1323 RLIDGEGNWELRTIS 1337
+ DG GN+E + I+
Sbjct: 635 HM-DGRGNYEFKQIT 648
|
|
| ZFIN|ZDB-GENE-050517-27 abcd1 "ATP-binding cassette, sub-family D (ALD), member 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 538 (194.4 bits), Expect = 6.9e-82, Sum P(2) = 6.9e-82
Identities = 109/225 (48%), Positives = 157/225 (69%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
I+ + ++TPTG+V+V +L ++V+ G +LLITGPNG GKSSLFR+L GLWP+ SG + K
Sbjct: 482 IKCENLPIITPTGDVVVSSLNMQVDEGMHLLITGPNGCGKSSLFRILSGLWPVYSGVLYK 541
Query: 505 PGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEP--LTHGGMVELLKNVDLEY 562
P D +FY+PQRPY +VGTLRDQ+IYP S QE++ +T + E+L+ V L Y
Sbjct: 542 PS--PD---HMFYIPQRPYMSVGTLRDQVIYP-HSVQEMQEKGITDRQLEEILQTVSLRY 595
Query: 563 LLDRYPPEKEIN-WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV 621
+L+R ++ W D LS GE+QR+GMAR+FYHKP++A+LDECTSAV+ D+E +
Sbjct: 596 ILEREGGWDAVSDWKDVLSGGEKQRMGMARMFYHKPQYALLDECTSAVSIDVEGKIFEAA 655
Query: 622 RAMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSSVVT 666
+ G S ++I+HRP+L +H +L DGEG WR +K D S+ ++
Sbjct: 656 KDAGISLLSITHRPSLWKYHSHLLQFDGEGGWRF-EKLDASTRIS 699
|
|
| MGI|MGI:1349216 Abcd3 "ATP-binding cassette, sub-family D (ALD), member 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 827 (296.2 bits), Expect = 9.5e-82, P = 9.5e-82
Identities = 203/605 (33%), Positives = 320/605 (52%)
Query: 79 NQKKGGLKSLQVLAAILLSEMGK----MGARDLLALVG-IVVLRTALSNR----LAKVQ- 128
N +K G K V+ + LS + + M R G ++++ L +R + +Q
Sbjct: 47 NNEKEGKKERAVVDKVFLSRLSQILKIMVPRTFCKETGYLLLIAVMLVSRTYCDVWMIQN 106
Query: 129 GFLFRAAFLRRVPLFFQLISENILLCF-LLSTMHSTSKYITGTLSLQFRKIVTKLIHTRY 187
G L + + R F+ N + L+S +++ KY L L FR +T+ ++ Y
Sbjct: 107 GTLIESGIIGRSSKDFKRYLFNFIAAMPLISLVNNFLKYGLNELKLCFRVRLTRYLYEEY 166
Query: 188 FENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYAS 247
+ YYK+ ++D RI +P+Q L DV +FC+ + +L + D +LY ++L S
Sbjct: 167 LQAFTYYKMGNLDNRIANPDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIG 226
Query: 248 PKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGEN 307
+ ++AY+L +G + GK+ EQ+ EGEYR ++SRL T++E IAFY G
Sbjct: 227 AQGPASMMAYLLVSGLFLTRLRRPIGKMTIMEQKYEGEYRYVNSRLITNSEEIAFYNGNK 286
Query: 308 KEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDT 367
+E+ I F+ L H+ + + G I + KY+ V +++ PF P
Sbjct: 287 REKQTIHSVFRKLVEHLHNFIFFRFSMGFIDSIIAKYVATVVGYLVVSRPFL-DLAHPRH 345
Query: 368 STLGRAKMLSNLRYHTSVIISLFQSLGTXXXXXXXXXXXXGYADRIHELMVISREL---- 423
+++L + +++ + Q+LG G+ RI ELM + ++L
Sbjct: 346 LHSTHSELLEDYYQSGRMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNHGR 405
Query: 424 ------SIEDK-------SPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEP 470
S ++K SP G+ + N I+F V + TP G++L+++L+ +V
Sbjct: 406 YERTMVSQQEKGIEGAQASPLVPGAGEIINTDNIIKFDHVPLATPNGDILIQDLSFEVRS 465
Query: 471 GSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLR 530
G+N+LI GPNG GKSSLFRVLG LWPL G + KP G ++FYVPQRPY +GTLR
Sbjct: 466 GANVLICGPNGCGKSSLFRVLGELWPLFGGRLTKPERG-----KLFYVPQRPYMTLGTLR 520
Query: 531 DQLIYPL-TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI-NWGDELSLGEQQRLG 588
DQ+IYP DQ+ ++ + E L NV L ++L+R + +W D LS GE+QR+
Sbjct: 521 DQVIYPDGKEDQKKRGISDQVLKEYLDNVQLGHILEREGGWDSVQDWMDVLSGGEKQRMA 580
Query: 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLD 648
MARLFYHKP+FAILDECTSAV+ D+E+ + R +G + T+SHR +L H+ L +D
Sbjct: 581 MARLFYHKPQFAILDECTSAVSVDVEDYIYSHCRKVGITLFTVSHRKSLWKHHEYYLHMD 640
Query: 649 GEGEW 653
G G +
Sbjct: 641 GRGNY 645
|
|
| WB|WBGene00004058 pmp-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 827 (296.2 bits), Expect = 9.5e-82, P = 9.5e-82
Identities = 190/576 (32%), Positives = 311/576 (53%)
Query: 108 LALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQL-ISENILLCFLLSTMHSTSKY 166
+ ++G V+L +++ A+ + R P+ F + + + L +S +++ K+
Sbjct: 94 MIVIGFVLLARTIADVYMITNATSVEASIVDRSPIMFAMSVFKYFLNLPAISLINALLKF 153
Query: 167 ITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQ 226
L L+FR+ +TK ++ +Y YY+IS++D RI +P+Q L DV +FC + EL
Sbjct: 154 SLSELKLRFRENLTKYLYGKYLGGFTYYQISNLDSRIQNPDQLLTQDVEKFCDGIVELYS 213
Query: 227 DDLTAVTDGLLYTWRL---CSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLE 283
+ + D LY ++L + P +F Y++ + ++ KL +EQ LE
Sbjct: 214 NMTKPILDVFLYVFKLGRALGWEGPGLLF---GYLMASMVVLTKLRRPIAKLTVEEQVLE 270
Query: 284 GEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLK 343
GEYR ++SRL ++E IAFY G E+ + F L H+R + + G + + + K
Sbjct: 271 GEYRYVNSRLIMNSEEIAFYQGNKPEKQALMGSFNNLVYHLRKTIMFRFTLGFVDNIVGK 330
Query: 344 YLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTXXXXXXXX 403
Y+ V + + FF N + + R +++ L + +++ L ++LG
Sbjct: 331 YITNIVGWVACAKTFFDVN-NEKFNEMDRNELMQELYNNGRMMLKLSEALGRLALAGRDM 389
Query: 404 XXXXGYADRIHELMVISRELS--------IEDKSPQRN-------GSRNYFSEANYIEFS 448
G+ R+ LM + ++ + D+S + GS ++ N I+F
Sbjct: 390 TRLSGFTTRVDTLMKVLDDMKAGRFEKAQVADESGEEGQRLMLKAGSGKLLAQDNMIKFD 449
Query: 449 GVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG 508
V +VTP G++L+E+L+ +V G N+L+ GPNG GKSSLFR LG LWP++ G + KP G
Sbjct: 450 EVPLVTPNGDILIESLSFEVPSGRNVLVCGPNGCGKSSLFRTLGELWPVMGGTLTKPAKG 509
Query: 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTS-DQEVEPLTHGGMVELLKNVDLEYLLDRY 567
++FYVPQRPY +GTLRDQ+IYP TS D +++ ++ + ++L+NV L +L+R
Sbjct: 510 -----KLFYVPQRPYMTLGTLRDQVIYPDTSFDMKMKGMSDKDLEQMLENVQLTNILERE 564
Query: 568 PPEKEI-NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGT 626
+ +W D LS GE+QR+ MARLFYHKP+FAILDECTSAV+ D+E R M
Sbjct: 565 GGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGAMYRLCREMNI 624
Query: 627 SCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGS 662
+ T+SHR +L +H+ L +DG G +R D S
Sbjct: 625 TLFTVSHRKSLWKYHEYSLYMDGRGSYRFEQIDDQS 660
|
|
| WB|WBGene00004061 pmp-4 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 643 (231.4 bits), Expect = 7.0e-62, P = 7.0e-62
Identities = 183/639 (28%), Positives = 327/639 (51%)
Query: 735 PRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDK 794
P+ L ++ ++ K+++P VF K+ + + +++ RT+++ +A L G+ V+ ++E++
Sbjct: 71 PQFLK-QLKELLKIMIPGVFSKEAGIIGMHSIILICRTFLTIFVAQLEGSMVQAIVEKNV 129
Query: 795 ASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMS 854
FV + +L + ++F+ IR + L L +R R+T+H K Y ++Y V N+
Sbjct: 130 LQFVLHLVKWILVALPATFVNSMIRFFESYLGLAFRTRLTKHAYKQYFSDQTYYAVSNLD 189
Query: 855 SKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVA------IL 908
++ +ADQ +T D+ + ++ L + + KP +D+ T+ + L QRG
Sbjct: 190 TRLQNADQCLTEDITMFSQSVAHLYSHLTKPVLDVALITFTLIKLAIQRGTGRSTFLPSC 249
Query: 909 YAYMLLGLG--FLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAM 966
A M + L LR+V+P FG + + E + +G R++H R+ ++E +AF+GG E
Sbjct: 250 MAIMAVSLTAKILRAVSPRFGHMVAEEARRKGHLRYLHSRIITNSEEIAFYGGHQAEYKQ 309
Query: 967 IESRFREXXXXXXXXXXXXXXXXXXDDFVTKQLPHN---VTWGLSLL---YAMEHKGDRA 1020
++ F + F+ K + V L +L YA + K +
Sbjct: 310 LDGAFNSLYQQMMLIFKKRIPYIMIEQFLMKYVWSGTGMVMIALPILATEYADDEKSTKL 369
Query: 1021 L-VSTQG--ELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQ 1077
+ +G E +++ S A ++ +++ EL+G R+ E+ ++ D A+
Sbjct: 370 EDLPDRGVSERTRGYATAKTLLFNSADAVERLMTSYKEVTELAGYTGRVHEMFQVFDDAK 429
Query: 1078 PG---DDEISGSSQHKWNSTDYQDSISFSKLD-IITPSQKLLARQLTFEIVPGKSLLVTG 1133
G +S ++ + D+ SK++ IIT S+ A ++ VP +VT
Sbjct: 430 KGIYQRQTVSAGAEQGQRGERF-DT---SKIEGIITDSE---ADEIILNSVP----IVT- 477
Query: 1134 PNGSG--KSSVFRVLRGLWPVVSG-------SLTK------PSQHIDEEAGSGCGIFYVP 1178
PNG K+ + G+ +++G SL + P E + ++Y+P
Sbjct: 478 PNGDVVVKNMTLTISPGMHVLITGPNGCGKSSLFRILGGLWPVYRGHLEKPTSDRMYYIP 537
Query: 1179 QRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYL 1238
QRPY LGTLRDQ+IYP + +++ +G I D L T+L V L ++
Sbjct: 538 QRPYMTLGTLRDQVIYPDT-------TIQMRRQG--------ITDQDLMTMLRIVHLEHI 582
Query: 1239 LEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLA 1298
+ERE GWDA +W D+LS GE+QR+GMAR+F+H+PK+ +LDECT+A S+DVE +Y+
Sbjct: 583 VEREG-GWDAQNDWMDVLSGGEKQRMGMARVFYHRPKYALLDECTSAVSIDVEGSIYQAI 641
Query: 1299 KDMGITFVTSSQRPALIPFHSLELRLIDGEGNWELRTIS 1337
KD GIT +T + RP+L FH+ L DGEG +++ +++
Sbjct: 642 KDSGITLLTVTHRPSLWKFHT-HLLQYDGEGGYKVSSLN 679
|
|
| ZFIN|ZDB-GENE-050517-29 abcd3b "ATP-binding cassette, sub-family D (ALD), member 3b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 816 (292.3 bits), Expect = 1.5e-80, P = 1.5e-80
Identities = 219/656 (33%), Positives = 339/656 (51%)
Query: 25 LLASGILVAGGT--AAY-LKSRFSSKKPD--AFGHYNGLGDSE--RKPDKAVANRSNIKK 77
L A +AG AAY LK R S++ G L D+E RK DKA + ++
Sbjct: 8 LTAGNSSIAGALLFAAYVLKQRLSTETNGYREKGSSKPLRDNEKDRKTDKAAVDNVFFRR 67
Query: 78 ANQKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFL 137
LK L A E G LL + ++V RT + G + +A +
Sbjct: 68 ICHI---LKILMPQA--FCKESGY-----LLLIAVMLVARTYCDVWMIH-NGTMIESAII 116
Query: 138 RRVPLFFQLISENILLCF-LLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKI 196
R F+ N + +S +++ K L L FR +T ++ Y + YY+I
Sbjct: 117 GRSTTTFKRYLVNFITVMPFISLVNNFLKLGINELKLCFRVRLTNHLYNDYLKGFTYYQI 176
Query: 197 SHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILA 256
++D RI +P+Q + DV +FC+ + +L + + D L+Y ++L + +L
Sbjct: 177 GNLDNRIANPDQLITQDVEKFCNSVVDLYSNVSKPLLDILIYIFKLNTAIGSLGPATLLG 236
Query: 257 YVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQK 316
Y+L +G ++ GK+ EQ+ EGEYR ++SRL T++E IAFY G +E+ I
Sbjct: 237 YLLLSGLLLTRLRRPIGKMTVTEQRYEGEYRYVNSRLITNSEEIAFYNGNLREKQTIIGT 296
Query: 317 FKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFF-AGNLKPDTSTLGRAKM 375
F+ L H+ +H + G++ + KY+ V ++I PF N + ST A+
Sbjct: 297 FQKLVDHLSRFIHFRFSMGVMDSIIAKYIAMAVGYLVISRPFLDISNQRHINSTY--AER 354
Query: 376 LSNLRYHTSVIISLFQSLGTXXXXXXXXXXXXGYADRIHELMVISRELS----------- 424
L + +++SL Q+LG G+ RI E+ + +EL+
Sbjct: 355 LEDYYQSGRMLMSLAQALGRIVLAGREMTRLSGFTARITEIQEVLKELNSGKYERTMVTH 414
Query: 425 -IED----KSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGP 479
I+D K P G N I+F + + TP G++L+ +L+ +V G+N+L+ GP
Sbjct: 415 RIKDTAVDKIPLIPGRGEIIIADNKIKFEHIPLATPNGDILISDLSFEVSSGTNVLVCGP 474
Query: 480 NGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTS 539
NG GKSSLFRVLG LWPL G + KP G ++FYVPQRPY +G+LRDQ+IYP T
Sbjct: 475 NGCGKSSLFRVLGELWPLCGGKLTKPERG-----KLFYVPQRPYMTLGSLRDQVIYPDTL 529
Query: 540 DQEVEPLTHGGMV-ELLKNVDLEYLLDRYPPEKEI-NWGDELSLGEQQRLGMARLFYHKP 597
+ +++ T ++ E L NV L ++L+R + + +W D LS GE+QR+ MARLFYHKP
Sbjct: 530 EDQMKKRTSDRVLKEYLDNVQLGHILEREGSWESVQDWMDVLSGGEKQRMAMARLFYHKP 589
Query: 598 KFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEW 653
+FAILDECTSAV+ D+E+ + R +G + T+SHR +L H+ L +DG G +
Sbjct: 590 QFAILDECTSAVSVDVEDFIYSHCRKVGITLFTVSHRKSLWKHHEYYLHMDGRGNY 645
|
|
| ZFIN|ZDB-GENE-040426-2868 abcd3a "ATP-binding cassette, sub-family D (ALD), member 3a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 816 (292.3 bits), Expect = 1.5e-80, P = 1.5e-80
Identities = 206/612 (33%), Positives = 324/612 (52%)
Query: 67 KAVANRSNIKKANQK-KGGLKSLQVL--AAILLSEMGKMGARD---LLALVGIVVLRTAL 120
K AN N +K +K + + L + + IL + K +++ LL + ++V RT
Sbjct: 39 KGSANELNSEKDGKKERAAVDKLFFIRISRILKIMVPKFFSKETWYLLLIAVMLVTRTYC 98
Query: 121 SNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTM-HSTSKYITGTLSLQFRKIV 179
+ + G + +A + R F+ N + +S + ++ K L L FR +
Sbjct: 99 DVWMIQ-NGTMIESAIIGRSTKGFKKYLFNFMTAMPISALVNNFLKLGLNELKLCFRVRL 157
Query: 180 TKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYT 239
TK ++ Y + YYK+ ++D RI + +Q L DV RFC+ + +L + + D LY
Sbjct: 158 TKHLYDEYLKGYTYYKMGNLDNRIANADQLLTQDVERFCNSVVDLYSNLSKPLLDIGLYI 217
Query: 240 WRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAES 299
++L + + ++AY+L +G + GK+ EQ+ EGEYR ++SRL T++E
Sbjct: 218 FKLTTAIGAQGPATMMAYLLISGLFLTRLRRPIGKMTVTEQKYEGEYRYVNSRLITNSEE 277
Query: 300 IAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFF 359
IAFY G +E+ I FK L H+ + + GM+ + KY V +++ PF
Sbjct: 278 IAFYNGNTREKQTIHSTFKKLVDHLHNFIFFRFSMGMVDSIIAKYFATVVGYLVVSRPFL 337
Query: 360 AGNLKPDTS-TLGRAKMLSNLRYHTSVIISLFQSLGTXXXXXXXXXXXXGYADRIHELMV 418
NL A++L + +++ + Q+LG G+ RI ELM
Sbjct: 338 --NLSHSRHLNSSHAELLEDYYQSGRMLLRMSQALGRIVLAGREMTRLSGFTARITELMR 395
Query: 419 ISREL------------SIEDKSPQRN---GSRNYFSEANYIEFSGVKVVTPTGNVLVEN 463
+ +EL S +D S + GS + N I+F + TP G+VL+ +
Sbjct: 396 VLKELNSGKYERTMVSQSEKDASEKLTLVPGSGRIINIDNIIKFDHTPLATPNGDVLIRD 455
Query: 464 LTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523
L +V+ G+N+L+ GPNG GKSSLFRVLG LWPL G++ KP G ++FYVPQRPY
Sbjct: 456 LCFEVKSGTNVLVCGPNGCGKSSLFRVLGELWPLFGGNLTKPERG-----KLFYVPQRPY 510
Query: 524 TAVGTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI-NWGDELSL 581
+G+LRDQ+IYP T + Q+ + ++ + E L NV L ++LDR + +W D LS
Sbjct: 511 MTLGSLRDQVIYPDTHESQKKKGISDLVLKEYLDNVQLGHILDREGSWDTVQDWMDVLSG 570
Query: 582 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFH 641
GE+QR+ MARLFYHKP+FAILDECTSAV+ D+E+ + R +G + T+SHR +L H
Sbjct: 571 GEKQRMAMARLFYHKPQFAILDECTSAVSVDVEDYIYSHCRKVGITLFTVSHRKSLWKHH 630
Query: 642 DVVLSLDGEGEW 653
+ L +DG G +
Sbjct: 631 EYYLHMDGRGNY 642
|
|
| DICTYBASE|DDB_G0293194 abcD2 "ABC transporter D family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 503 (182.1 bits), Expect = 1.9e-80, Sum P(2) = 1.9e-80
Identities = 101/217 (46%), Positives = 142/217 (65%)
Query: 439 FSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV 498
F E ++I+F V +V+P G +LVENL +V P N++ITGPNGSGKSSLFR+LG LWPL
Sbjct: 512 FVEGDFIKFENVSIVSPEGKLLVENLDFQVMPNQNVMITGPNGSGKSSLFRILGELWPLH 571
Query: 499 SGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGMVELLKN 557
G + KP ++I +VPQ+PY +GTLRDQ+IYP + D + +T + LL
Sbjct: 572 CGTVIKPR-----KEDILFVPQKPYLVLGTLRDQIIYPHSHDDMKKLGVTDDDLQHLLAT 626
Query: 558 VDLEYLLDR-YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 616
VD + R + + +W LS G++QR+ MARLFYH+P++AILDECTSAV+ ++E +
Sbjct: 627 VDPNLTIIRQWNWDDTKDWFTALSGGQKQRIAMARLFYHRPQYAILDECTSAVSDEVEGK 686
Query: 617 FCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEW 653
+ +G + T+SHRP L A+HD VL +G G W
Sbjct: 687 IYETCKKLGITLFTVSHRPQLRAYHDYVLLFNGRGGW 723
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q94FB9 | AB1D_ARATH | 3, ., 6, ., 3, ., 4, 7 | 0.7946 | 0.9932 | 0.9940 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| estExt_fgenesh4_pm.C_LG_V0072 | peroxisomal membrane ABC transporter family, PMP family (1310 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1338 | |||
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 1e-144 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 1e-134 | |
| pfam06472 | 282 | pfam06472, ABC_membrane_2, ABC transporter transme | 4e-95 | |
| pfam06472 | 282 | pfam06472, ABC_membrane_2, ABC transporter transme | 2e-90 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 1e-88 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 1e-79 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 1e-75 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-61 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 3e-27 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-25 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 4e-24 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 8e-24 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 3e-22 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-21 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-21 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-21 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-20 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 6e-20 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 7e-20 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 7e-20 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-19 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 2e-19 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-19 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-19 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 3e-19 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-18 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-18 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-18 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 3e-18 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 4e-18 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 5e-18 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 8e-18 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 8e-18 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-17 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-17 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-17 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 5e-17 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-16 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-16 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 2e-16 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 8e-16 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 8e-16 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-15 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-15 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-15 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-15 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 4e-15 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 5e-15 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-14 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-14 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-14 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-14 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-14 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 4e-14 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 8e-14 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 9e-14 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-13 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-13 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-13 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-13 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-13 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-13 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 3e-13 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 3e-13 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 4e-13 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 4e-13 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 5e-13 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 7e-13 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 7e-13 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 7e-13 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 7e-13 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 8e-13 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 8e-13 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-12 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-12 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-12 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 3e-12 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-12 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 3e-12 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 3e-12 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 5e-12 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 5e-12 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 7e-12 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 7e-12 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 8e-12 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-11 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-11 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-11 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-11 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-11 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 3e-11 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 3e-11 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 3e-11 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 4e-11 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 4e-11 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 4e-11 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 4e-11 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 5e-11 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 6e-11 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 6e-11 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 6e-11 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 7e-11 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 8e-11 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-10 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-10 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-10 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-10 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-10 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-10 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-10 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-10 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-10 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 3e-10 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 3e-10 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-10 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 3e-10 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 3e-10 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 4e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-10 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 5e-10 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 5e-10 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 5e-10 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 6e-10 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 8e-10 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 8e-10 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 8e-10 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 8e-10 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 8e-10 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 9e-10 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 9e-10 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-09 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-09 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 1e-09 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-09 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-09 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 1e-09 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-09 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-09 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-09 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 2e-09 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-09 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 3e-09 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-09 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 3e-09 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 3e-09 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 3e-09 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 4e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 5e-09 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 6e-09 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 6e-09 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 6e-09 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 7e-09 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 7e-09 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 7e-09 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 8e-09 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 8e-09 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 8e-09 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 9e-09 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-08 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-08 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 1e-08 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-08 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-08 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 1e-08 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 2e-08 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-08 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 2e-08 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-08 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-08 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-08 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 2e-08 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 3e-08 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 3e-08 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-08 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 3e-08 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-08 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 3e-08 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 3e-08 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 4e-08 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 4e-08 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 4e-08 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-08 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 5e-08 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 7e-08 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 8e-08 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 8e-08 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 8e-08 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 8e-08 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 9e-08 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 9e-08 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 9e-08 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-07 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-07 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 1e-07 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 1e-07 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-07 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 1e-07 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-07 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-07 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-07 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-07 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 1e-07 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-07 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-07 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-07 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 2e-07 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-07 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-07 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-07 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 3e-07 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 3e-07 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 3e-07 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 4e-07 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 4e-07 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 4e-07 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 4e-07 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 5e-07 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 5e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 5e-07 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 5e-07 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 5e-07 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 6e-07 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 7e-07 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 7e-07 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 7e-07 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 9e-07 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 9e-07 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 9e-07 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-06 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-06 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-06 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 1e-06 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 1e-06 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 1e-06 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 1e-06 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-06 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 2e-06 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-06 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-06 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-06 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 2e-06 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-06 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-06 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-06 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 2e-06 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-06 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 3e-06 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 3e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-06 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 3e-06 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 4e-06 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 4e-06 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 4e-06 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 4e-06 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 5e-06 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 6e-06 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 6e-06 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 6e-06 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 7e-06 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 7e-06 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 7e-06 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 8e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 8e-06 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 9e-06 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-05 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 1e-05 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-05 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 1e-05 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 1e-05 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 2e-05 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-05 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-05 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-05 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-05 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-05 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-05 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 2e-05 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 2e-05 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 2e-05 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 3e-05 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 3e-05 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 3e-05 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 3e-05 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 3e-05 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 3e-05 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 3e-05 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 3e-05 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 3e-05 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 4e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 4e-05 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 4e-05 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 4e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 4e-05 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 5e-05 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 5e-05 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 6e-05 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 6e-05 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 6e-05 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 6e-05 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 6e-05 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 6e-05 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 7e-05 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 7e-05 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 8e-05 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 8e-05 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 8e-05 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 8e-05 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 8e-05 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 9e-05 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 9e-05 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 9e-05 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 9e-05 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 1e-04 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-04 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 1e-04 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 1e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-04 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-04 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-04 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 1e-04 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 1e-04 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-04 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-04 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-04 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-04 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 2e-04 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-04 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-04 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-04 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-04 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-04 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 3e-04 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 3e-04 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 3e-04 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 3e-04 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 3e-04 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 4e-04 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 4e-04 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 4e-04 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 4e-04 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 4e-04 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 4e-04 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 5e-04 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 5e-04 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 5e-04 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 5e-04 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 5e-04 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 5e-04 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 6e-04 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 6e-04 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 6e-04 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 6e-04 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 6e-04 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 7e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 7e-04 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 7e-04 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 8e-04 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 8e-04 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 8e-04 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 9e-04 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 9e-04 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 9e-04 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 0.001 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 0.001 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 0.001 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 0.001 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 0.001 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 0.001 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 0.001 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 0.001 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 0.001 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 0.001 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 0.001 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 0.001 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.001 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 0.001 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 0.002 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 0.002 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 0.002 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 0.002 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 0.002 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 0.002 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 0.002 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 0.002 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 0.002 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 0.002 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 0.002 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 0.002 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 0.002 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 0.002 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 0.002 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 0.003 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 0.003 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 0.003 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 0.003 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 0.003 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 0.003 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 0.003 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 0.003 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 0.003 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 0.003 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 0.003 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 0.003 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 0.004 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 0.004 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 0.004 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 0.004 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 0.004 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 453 bits (1167), Expect = e-144
Identities = 221/617 (35%), Positives = 336/617 (54%), Gaps = 59/617 (9%)
Query: 741 RVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRL 800
++ + K+L+P VF K+ L+ +AFL+VSRT++S +A+L+G ++ + +F +
Sbjct: 78 KLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWI 137
Query: 801 IGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDA 860
+ L + +SFI +I++L L L +R+R+T++L YL +FYKV N+ S+ +
Sbjct: 138 LFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDSRIQNP 197
Query: 861 DQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLR 920
DQ +T D+EK + L + + KP +D++ +++++ G G A L+AY+ L
Sbjct: 198 DQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVVLT 257
Query: 921 SVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLL 980
+ P G LT EQ LEG +R++H RL ++E +AF+ G EK + S F L+EH L
Sbjct: 258 KLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNL 317
Query: 981 LLKKKWLFGILDDFVTKQLPHNVTWGLSLLYA-----MEHKGDRALVSTQGELAHAL--- 1032
++K ++ +G LD+ V K TW L A + L ++ EL
Sbjct: 318 IIKFRFSYGFLDNIVAK-----YTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNN 372
Query: 1033 -RFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGD--------DEI 1083
R L A G ++ R L+G R+ L ++LD + G+ E
Sbjct: 373 GRLLLKAAD----ALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIES 428
Query: 1084 SGSSQHKWNSTD------YQDS-ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNG 1136
N YQD+ I F + ++TP+ +L L+FE+ G +LL+ GPNG
Sbjct: 429 GREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNGDVLIESLSFEVPSGNNLLICGPNG 488
Query: 1137 SGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPL 1196
GKSS+FR+L LWPV G LTKP++ +FYVPQRPY LGTLRDQIIYP
Sbjct: 489 CGKSSLFRILGELWPVYGGRLTKPAK---------GKLFYVPQRPYMTLGTLRDQIIYPD 539
Query: 1197 SREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDIL 1256
S E+ + R L D L+ IL+ V+L+++LER E GW A +W D+L
Sbjct: 540 SSEDMKRRGLS---------------DKDLEQILDNVQLTHILER-EGGWSAVQDWMDVL 583
Query: 1257 SLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIP 1316
S GE+QR+ MARLF+HKP+F ILDECT+A SVDVE +YRL ++ GIT + S R +L
Sbjct: 584 SGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWK 643
Query: 1317 FHSLELRLIDGEGNWEL 1333
+H L +DG G ++
Sbjct: 644 YHEYLLY-MDGRGGYQF 659
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 428 bits (1101), Expect = e-134
Identities = 212/624 (33%), Positives = 331/624 (53%), Gaps = 51/624 (8%)
Query: 65 PDKAVANRSNIKKANQK--KGG--LKSLQVLAAILL-----SEMGKMGARDLLALVGIV- 114
V S I+ A +K G L L L IL+ E G LL L+ +
Sbjct: 52 ELTIVGKHSTIEGAKKKAHVNGVFLGKLDFLLKILIPRVFCKETG------LLILIAFLL 105
Query: 115 VLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLL-----STMHSTSKYITG 169
V RT LS +A + G + ++ +RR P F I L + L S ++S KY+
Sbjct: 106 VSRTYLSVYVATLDGQI-ESSIVRRSPRNFAWI----LFKWFLIAPPASFINSAIKYLLK 160
Query: 170 TLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDL 229
L L+FR +T+ ++++Y +YK+S++D RI +P+Q L DV +FC + EL +
Sbjct: 161 ELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDSRIQNPDQLLTQDVEKFCDSVVELYSNLT 220
Query: 230 TAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQL 289
+ D +LY+++L + + AY+ G ++ P GKL +EQ LEGEYR +
Sbjct: 221 KPILDVILYSFKLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYV 280
Query: 290 HSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATV 349
HSRL ++E IAFY G E+ + F L H+ +++ + +G + + + KY + V
Sbjct: 281 HSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYTWSAV 340
Query: 350 AVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGY 409
++ + P F P + +++ + +++ +LG L ++ R + RL+G+
Sbjct: 341 GLVAVSIPIFDKT-HPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGF 399
Query: 410 ADRIHELMVI-----------SRELSIED------KSPQRNGSRNYFSEANYIEFSGVKV 452
R+ L+ + R IE S G + N I+F + +
Sbjct: 400 TARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPL 459
Query: 453 VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLN 512
VTP G+VL+E+L+ +V G+NLLI GPNG GKSSLFR+LG LWP+ G + KP G
Sbjct: 460 VTPNGDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGK--- 516
Query: 513 KEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEP-LTHGGMVELLKNVDLEYLLDRYPPEK 571
+FYVPQRPY +GTLRDQ+IYP +S+ L+ + ++L NV L ++L+R
Sbjct: 517 --LFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWS 574
Query: 572 EI-NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCIT 630
+ +W D LS GE+QR+ MARLFYHKP+FAILDECTSAV+ D+E R G + +
Sbjct: 575 AVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFS 634
Query: 631 ISHRPALVAFHDVVLSLDGEGEWR 654
+SHR +L +H+ +L +DG G ++
Sbjct: 635 VSHRKSLWKYHEYLLYMDGRGGYQ 658
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|219046 pfam06472, ABC_membrane_2, ABC transporter transmembrane region 2 | Back alignment and domain information |
|---|
Score = 306 bits (786), Expect = 4e-95
Identities = 109/275 (39%), Positives = 167/275 (60%)
Query: 85 LKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFF 144
L+ L L IL A LLAL ++VLRT LS +A++ G L +A + F
Sbjct: 8 LRRLWRLLKILFPRWFSKEAGLLLALAALLVLRTFLSVLVAQLDGQLVKALVAKNARGFI 67
Query: 145 QLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRIT 204
+L+ + LL S ++S KY+T L+L+FR +T+ +H Y +N YYK+S++DGRI
Sbjct: 68 RLLLKWALLAVPASFVNSALKYLTQKLALRFRTRLTRHLHDEYLKNRTYYKLSNLDGRID 127
Query: 205 HPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTM 264
+P+QR+ DV +FCS S+L + L + D +L+T+ L + + YVL + +
Sbjct: 128 NPDQRITQDVEKFCSSSSDLYSNLLKPILDIILFTFILWRLSGWLGPAILFLYVLLSTVI 187
Query: 265 MRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324
+R P FGKL+++EQ+LEG++R LHSRL T+AE IAFY GE +E+ +Q++FK+L HM
Sbjct: 188 LRRLGPPFGKLVAEEQRLEGDFRYLHSRLITNAEEIAFYRGEEREKKQLQRRFKSLIDHM 247
Query: 325 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFF 359
R +L W+G I+DF+LKY + + +L P F
Sbjct: 248 RRILRRRLWYGFIEDFVLKYTWSILGYVLCAVPIF 282
|
This domain covers the transmembrane of a small family of ABC transporters and shares sequence similarity with pfam00664. Mutations in this domain in human ABCD3 (PMP70) are believed responsible for Zellweger Syndrome-2; mutations in human ABCD1 (ALD) are responsible for recessive X-linked adrenoleukodystrophy. A Saccharomyces cerevisiae homolog is involved in the import of long-chain fatty acids. Length = 282 |
| >gnl|CDD|219046 pfam06472, ABC_membrane_2, ABC transporter transmembrane region 2 | Back alignment and domain information |
|---|
Score = 293 bits (753), Expect = 2e-90
Identities = 101/273 (36%), Positives = 170/273 (62%)
Query: 741 RVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRL 800
R+ + K+L P F K+ LLA+A L+V RT++S +A L+G VK ++ ++ F+RL
Sbjct: 10 RLWRLLKILFPRWFSKEAGLLLALAALLVLRTFLSVLVAQLDGQLVKALVAKNARGFIRL 69
Query: 801 IGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDA 860
+ L + +SF+ ++++LT +LAL +R R+T+HL YL+ ++YK+ N+ + +
Sbjct: 70 LLKWALLAVPASFVNSALKYLTQKLALRFRTRLTRHLHDEYLKNRTYYKLSNLDGRIDNP 129
Query: 861 DQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLR 920
DQRIT D+EK + S L + ++KP +DI+ FT+ + L+G G AIL+ Y+LL LR
Sbjct: 130 DQRITQDVEKFCSSSSDLYSNLLKPILDIILFTFILWRLSGWLGPAILFLYVLLSTVILR 189
Query: 921 SVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLL 980
+ P FG L + EQ+LEG FR++H RL +AE +AF+ G REK ++ RF+ L++H
Sbjct: 190 RLGPPFGKLVAEEQRLEGDFRYLHSRLITNAEEIAFYRGEEREKKQLQRRFKSLIDHMRR 249
Query: 981 LLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAM 1013
+L+++ +G ++DFV K + + L +
Sbjct: 250 ILRRRLWYGFIEDFVLKYTWSILGYVLCAVPIF 282
|
This domain covers the transmembrane of a small family of ABC transporters and shares sequence similarity with pfam00664. Mutations in this domain in human ABCD3 (PMP70) are believed responsible for Zellweger Syndrome-2; mutations in human ABCD1 (ALD) are responsible for recessive X-linked adrenoleukodystrophy. A Saccharomyces cerevisiae homolog is involved in the import of long-chain fatty acids. Length = 282 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 300 bits (770), Expect = 1e-88
Identities = 153/587 (26%), Positives = 254/587 (43%), Gaps = 71/587 (12%)
Query: 105 RDLLALVGIVVLRTALSNR----LAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTM 160
+ L+ ++ LS R L G + A R + F+Q + ++ LL +
Sbjct: 43 KRAWLLLIGILALILLSVRGQVLLNDWNGPFYNALARRDLAAFWQQLQVFAIIAGLLVLL 102
Query: 161 HSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR--ITHPEQRLASDVPRFC 218
+ ++ L L++R+ +TK + R+ + YY+++ G I +P+QR+ D+ F
Sbjct: 103 NVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFT 162
Query: 219 SELSELVQDDLTAVTD-------------GLLYTWRLCSYASPKYVFW-ILAYVLGAGTM 264
+L L +V GL +T S+ P Y+ W ++ Y + A +
Sbjct: 163 ETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLL 222
Query: 265 MRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324
+L + Q+LE ++R R+R +AE+IA Y GE E + +F
Sbjct: 223 THLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRF------- 275
Query: 325 RVVLHDHWWFGMIQDFLLKYLGAT---------VAVILIIEPFFAGNLK-PDTSTLGRA- 373
VL + W + ++ + +++ +F+G + A
Sbjct: 276 DAVLGN-WR--RLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQAVGAF 332
Query: 374 -KMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQR 432
++ S+L + I + ++ + RL E ++ + P R
Sbjct: 333 GQVHSSLSW----FIDNYDAIADWRATLLRL----------AEFRQALEAAQMDTEKPAR 378
Query: 433 NGSRNYFSEAN--YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRV 490
G R F + I + + TP G L+ L +V PG LLITG +G+GK+SL R
Sbjct: 379 TGRRIDFDDNADHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRA 438
Query: 491 LGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGG 550
L GLWP SG I+ P + + ++PQRPY GTLR+ L YP + +
Sbjct: 439 LAGLWPWGSGRISMPA-----DSALLFLPQRPYLPQGTLREALCYPNAA----PDFSDAE 489
Query: 551 MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 610
+V +L V L L +R ++E W LS GEQQRL ARL HKPK+ LDE TSA+
Sbjct: 490 LVAVLHKVGLGDLAERL--DEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALD 547
Query: 611 TDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDGEGEWRV 655
+ E+R ++ + I++ HRP L FH L L + +
Sbjct: 548 EETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELLDDAGGQN 594
|
Length = 604 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 274 bits (703), Expect = 1e-79
Identities = 143/564 (25%), Positives = 238/564 (42%), Gaps = 69/564 (12%)
Query: 791 EQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKV 850
+D A+F + + V + + + + L L L WR +T+ LL +L +Y++
Sbjct: 79 RRDLAAFWQQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRL 138
Query: 851 -FNMSSKSID-ADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFT---W----RMKALTG 901
ID DQRI D+ T L G+++ + ++ FT W + G
Sbjct: 139 AQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIG 198
Query: 902 QRGVAI-------LYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESV 954
I + Y + + L Q+LE FR+ R+R +AE++
Sbjct: 199 GFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAI 258
Query: 955 AFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAME 1014
A + G E+ ++ RF +L + + L + + +G +
Sbjct: 259 ALYRGEKVERRRLDDRFDAVLGN----------WRRLVRAQIRLTWFQLGYGWLSVVLPI 308
Query: 1015 HKGDRALVSTQ---GELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEE 1071
S Q G L A+ V S + ++ + + + R+ E +
Sbjct: 309 LIAAPRYFSGQITFGGLMQAVGAFGQVHS----SLSWFIDNYDAIADWRATLLRLAEFRQ 364
Query: 1072 LLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLV 1131
L+AAQ ++ + + + + I+ L + TP + L +L FE+ PG+ LL+
Sbjct: 365 ALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLSELNFEVRPGERLLI 424
Query: 1132 TGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQ 1191
TG +G+GK+S+ R L GLWP SG ++ P + + ++PQRPY GTLR+
Sbjct: 425 TGESGAGKTSLLRALAGLWPWGSGRISMP---------ADSALLFLPQRPYLPQGTLREA 475
Query: 1192 IIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLN 1251
+ YP + + D+ L +L V L L ER D
Sbjct: 476 LCYPNA--------------------APDFSDAELVAVLHKVGLGDLAER----LDEEDR 511
Query: 1252 WEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDM--GITFVTSS 1309
W+ +LS GEQQRL ARL HKPK+ LDE T+A + E++LY+L K+ T ++
Sbjct: 512 WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVG 571
Query: 1310 QRPALIPFHSLELRLIDGEGNWEL 1333
RP L FHS +L L + +
Sbjct: 572 HRPTLWNFHSRQLEL-LDDAGGQN 594
|
Length = 604 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 247 bits (633), Expect = 1e-75
Identities = 90/209 (43%), Positives = 117/209 (55%), Gaps = 43/209 (20%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
IE + + TP G VL+++L+ +++PG LLITGP+G+GKSSLFR L GLWP SG I
Sbjct: 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60
Query: 505 PGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLL 564
P ++ ++PQRPY +GTLR+QLIYP
Sbjct: 61 PEGE-----DLLFLPQRPYLPLGTLREQLIYP---------------------------- 87
Query: 565 DRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM 624
W D LS GEQQRL ARL HKPKF LDE TSA+ + E+R ++ +
Sbjct: 88 ----------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL 137
Query: 625 GTSCITISHRPALVAFHDVVLSLDGEGEW 653
G + I++ HRP+L FHD VL LDGEG W
Sbjct: 138 GITVISVGHRPSLWKFHDRVLDLDGEGGW 166
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 206 bits (527), Expect = 2e-61
Identities = 90/232 (38%), Positives = 116/232 (50%), Gaps = 66/232 (28%)
Query: 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTK 1159
I L + TP ++L + L+FEI PG LL+TGP+G+GKSS+FR L GLWP SG +
Sbjct: 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60
Query: 1160 PSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTT 1219
P G + ++PQRPY LGTLR+Q+IYP
Sbjct: 61 P---------EGEDLLFLPQRPYLPLGTLREQLIYP------------------------ 87
Query: 1220 NILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGIL 1279
WD D+LS GEQQRL ARL HKPKF L
Sbjct: 88 --------------------------WD------DVLSGGEQQRLAFARLLLHKPKFVFL 115
Query: 1280 DECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNW 1331
DE T+A + E++LY+L K++GIT ++ RP+L FH L L DGEG W
Sbjct: 116 DEATSALDEESEDRLYQLLKELGITVISVGHRPSLWKFHDRVLDL-DGEGGW 166
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 3e-27
Identities = 63/214 (29%), Positives = 93/214 (43%), Gaps = 54/214 (25%)
Query: 445 IEFSGVKVVTPTGNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
IEF V P V ++++L ++PG + I GP+GSGKS+L ++L L+ SG I
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 504 KPGV------GSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKN 557
GV L K I YVPQ P+ GT+R+ N
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRE-------------------------N 95
Query: 558 VDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF 617
+ LS G++QR+ +AR P ILDE TSA+ + E
Sbjct: 96 I--------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALI 135
Query: 618 CAKVRAM--GTSCITISHRPALVAFHDVVLSLDG 649
+RA+ G + I I+HR + + D ++ LD
Sbjct: 136 LEALRALAKGKTVIVIAHRLSTIRDADRIIVLDD 169
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 1e-25
Identities = 103/437 (23%), Positives = 173/437 (39%), Gaps = 63/437 (14%)
Query: 247 SPKYVFWILAYVLGAGTMMRNFSPAFG---------------KLMSKEQQLEGEYRQLHS 291
VF + ++G+ ++ + S L K ++L R+
Sbjct: 129 VLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALG 188
Query: 292 RLRTHA-ESI-------AFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLK 343
L ES+ AF E ++F+ +R + L+
Sbjct: 189 ELNARLLESLSGIRVIKAFGA-----EDRELKRFEEANEELRRANLRASRLEALLAPLML 243
Query: 344 YLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRL 403
L + V+++ G + +L + + + Y ++ L + L L
Sbjct: 244 LLSSLGTVLVL----ALGGFLVLSGSLTVGALAAFILY----LLRLLTPILQLGEVVSLL 295
Query: 404 NRLSGYADRIHELMVISREL-SIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVE 462
R S A+R+ EL+ E+ D GS IEF V P +++
Sbjct: 296 QRASAAAERLFELLDEEPEVEDPPDPLKDTIGS---------IEFENVSFSYPGKKPVLK 346
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 516
+++ +EPG + I GP+GSGKS+L ++L L+ SG I G+ L K I
Sbjct: 347 DISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIG 406
Query: 517 YVPQRPYTAVGTLRDQLIY--PLTSDQEVEP-LTHGGMVELLKNVDLEYLLDRYPPEKEI 573
V Q P GT+R+ + P +D+E+E L E + N L D E+
Sbjct: 407 IVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIAN--LPDGYDTIVGER-- 462
Query: 574 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITI 631
G LS G++QRL +AR P ILDE TSA+ T+ E ++ + G + + I
Sbjct: 463 --GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLII 520
Query: 632 SHRPALVAFHDVVLSLD 648
+HR + + D ++ LD
Sbjct: 521 AHRLSTIKNADRIIVLD 537
|
Length = 567 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 4e-24
Identities = 66/217 (30%), Positives = 104/217 (47%), Gaps = 18/217 (8%)
Query: 445 IEFSGVKVVTP-TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
IEF V P ++N++L + G + I G GSGKS+L ++L GL+ SG +
Sbjct: 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL 62
Query: 504 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLI--YPLTSDQEV-EPLTHGGMVEL 554
G +DL + I YVPQ GTLRD + PL D+ + G+ +
Sbjct: 63 LDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDF 122
Query: 555 LKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME 614
+ D E+ G LS G++Q + +AR + P +LDE TSA+ + E
Sbjct: 123 VNKHPNGL--DLQIGER----GRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSE 176
Query: 615 ERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDG 649
ER ++R + + I I+HRP+L+ D ++ +D
Sbjct: 177 ERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDS 213
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 8e-24
Identities = 80/281 (28%), Positives = 129/281 (45%), Gaps = 29/281 (10%)
Query: 392 SLGTL----SISSR---RLNRLSGYADRIHELMVISREL-SIEDKSPQRNGSRNYFSEAN 443
+LG L ++ + RLS + V L I D P++ G +
Sbjct: 408 TLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPK 467
Query: 444 ---YIEFSGVKV-VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS 499
IEF V P ++E+L+L++ PG + I G +GSGKS+L ++L GL+
Sbjct: 468 LQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQ 527
Query: 500 GHIAKPGVG-SDLNKE-----IFYVPQRPYTAVGTLRDQLI--YPLTSDQEV-EPLTHGG 550
G I GV +D++ + YV Q P+ G++R+ + P +D+E+ E G
Sbjct: 528 GRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAG 587
Query: 551 MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 610
E ++N+ + Y D E N LS G++QRL +AR KPK +LDE TSA+
Sbjct: 588 AHEFIENLPMGY--DTPVGEGGAN----LSGGQRQRLALARALLSKPKILLLDEATSALD 641
Query: 611 TDMEERFCAKVRAMGTSC--ITISHRPALVAFHDVVLSLDG 649
+ E + + I I+HR + + D ++ LD
Sbjct: 642 PETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQ 682
|
Length = 709 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 3e-22
Identities = 56/213 (26%), Positives = 89/213 (41%), Gaps = 55/213 (25%)
Query: 445 IEFSGVKVVTP-TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
+E V P ++ N++ +EPG +L I GP+GSGKS+L R++ GL SG +
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 504 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKN 557
G ++L + Y+PQ G++ + N
Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDDELFSGSIAE-------------------------N 95
Query: 558 VDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF 617
+ LS G++QRLG+AR Y P+ +LDE S + + E
Sbjct: 96 I--------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERAL 135
Query: 618 CAKVRAM---GTSCITISHRPALVAFHDVVLSL 647
+ A+ G + I I+HRP +A D +L L
Sbjct: 136 NQAIAALKAAGATRIVIAHRPETLASADRILVL 168
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-21
Identities = 69/214 (32%), Positives = 102/214 (47%), Gaps = 17/214 (7%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
+EFSGV V P + ++ V PG + + GP+G+GKS+L +L G G IA
Sbjct: 322 LEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAV 381
Query: 505 PGVG------SDLNKEIFYVPQRPYTAVGTLRD--QLIYPLTSDQEV-EPLTHGGMVELL 555
GV +I +VPQ P+ GT+ + +L P SD E+ E L G+ E +
Sbjct: 382 NGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFV 441
Query: 556 KNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 615
L LD E G LS G+ QRL +AR F +LDE T+ + + E
Sbjct: 442 A--ALPQGLDTPIGEG----GAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEA 495
Query: 616 RFCAKVRAM--GTSCITISHRPALVAFHDVVLSL 647
+RA+ G + + ++HR AL A D ++ L
Sbjct: 496 EVLEALRALAQGRTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 2e-21
Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 21/218 (9%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
IEF V +++++ ++PG + I GP G+GK++L +L + G I
Sbjct: 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILI 62
Query: 505 PGV-GSDLNKE-----IFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELLK 556
G+ D++++ I V Q + GT+ + + P +D+EV E K
Sbjct: 63 DGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVI--------EAAK 114
Query: 557 NVDLEYLLDRYPP--EKEIN-WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 613
+ + P + + G LS GE+Q L +AR PK ILDE TS + T+
Sbjct: 115 EAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTET 174
Query: 614 EERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDG 649
E+ + + G + I I+HR + + D +L LD
Sbjct: 175 EKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDD 212
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 2e-21
Identities = 60/241 (24%), Positives = 103/241 (42%), Gaps = 24/241 (9%)
Query: 424 SIEDKSPQRNGSRNYFSEANY----IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGP 479
++ + GS AN I + P G + +L L ++ G + G
Sbjct: 296 TLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGA 355
Query: 480 NGSGKSSLFRVLGGLWPLVSGHIAKPGV------GSDLNKEIFYVPQRPYTAVGTLRDQL 533
+G+GKS+L +L G G I G+ K+I +V Q PY GT+R+ +
Sbjct: 356 SGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENI 415
Query: 534 IY--PLTSDQEV-EPLTHGGMVELLKNVD-LEYLLDRYPPEKEINWGDELSLGEQQRLGM 589
+ P SD+E+ L G++E + D L+ ++ G LS G+ QRL +
Sbjct: 416 LLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEG--------GAGLSGGQAQRLAL 467
Query: 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSL 647
AR +LDE T+ + + E+ ++ + + + I+HR A D ++ L
Sbjct: 468 ARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVL 527
Query: 648 D 648
D
Sbjct: 528 D 528
|
Length = 559 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 90.6 bits (226), Expect = 3e-20
Identities = 65/234 (27%), Positives = 102/234 (43%), Gaps = 45/234 (19%)
Query: 445 IEFSGVKVVTPTGNVLVE---NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
IE + G V+ ++L +E G + I GP+GSGKS+L +LGGL SG
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 502 IAKPGV----------GSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGG 550
+ G + + I +V Q L+ LT+ + VE PL G
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFN---------LLPDLTALENVELPLLLAG 111
Query: 551 MV---------ELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601
+ ELL+ V L L+ YP ELS G+QQR+ +AR + PK +
Sbjct: 112 VPKKERRERAEELLERVGLGDRLNHYP--------SELSGGQQQRVAIARALANDPKIIL 163
Query: 602 LDECTSAVTTDMEER----FCAKVRAMGTSCITISHRPALVAFHDVVLSL-DGE 650
DE T + ++ + + GT+ + ++H P L + D ++ L DG+
Sbjct: 164 ADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGK 217
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 6e-20
Identities = 62/200 (31%), Positives = 90/200 (45%), Gaps = 23/200 (11%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 516
N L + G + I G +GSGKS+L ++L G W G I GV L + I
Sbjct: 356 NFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETIS 415
Query: 517 YVPQRPYTAVGTLRD--QLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEIN 574
+ QR + GTLRD +L P SD+E + L+ V LE LL P+
Sbjct: 416 VLTQRVHLFSGTLRDNLRLANPDASDEE--------LWAALQQVGLEKLL-ESAPDGLNT 466
Query: 575 WGDE----LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSC 628
W E LS GE++RL +AR H +LDE T + E + A + G +
Sbjct: 467 WLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTL 526
Query: 629 ITISHRPALVAFHDVVLSLD 648
+ ++HR + D ++ LD
Sbjct: 527 LMVTHRLRGLERMDRIIVLD 546
|
Length = 573 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 7e-20
Identities = 69/218 (31%), Positives = 106/218 (48%), Gaps = 20/218 (9%)
Query: 445 IEFSGVKVVTP--TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502
IEF V P L +N++L + PG + I G GSGKS+L ++L GL+ G +
Sbjct: 464 IEFRNVSFAYPGQETPAL-DNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSV 522
Query: 503 AKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEV-EPLTHGGMVE 553
GV +DL + I YVPQ P GTLRD + P D+E+ G+ E
Sbjct: 523 LLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTE 582
Query: 554 LLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 613
++ LD E+ G LS G++Q + +AR P +LDE TSA+
Sbjct: 583 FVRR--HPDGLDMQIGER----GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRS 636
Query: 614 EERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDG 649
EERF +++ G + + ++HR +L+ D ++ +D
Sbjct: 637 EERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDN 674
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 89.1 bits (222), Expect = 7e-20
Identities = 63/214 (29%), Positives = 94/214 (43%), Gaps = 36/214 (16%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEI 515
G+ ++E+++ +V+PG L I GPNG+GKS+L + + GL SG I G K I
Sbjct: 11 GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRI 70
Query: 516 FYVPQR-------PYTA--------VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDL 560
YVPQR P + G +V+ E L+ V L
Sbjct: 71 GYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVD--------EALERVGL 122
Query: 561 EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF--- 617
L DR +I ELS G+QQR+ +AR P +LDE + V +E
Sbjct: 123 SELADR-----QI---GELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYEL 174
Query: 618 CAKVRAMGTSCITISHRPALV-AFHDVVLSLDGE 650
++R G + + ++H LV + D VL L+
Sbjct: 175 LRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT 208
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 93.8 bits (234), Expect = 1e-19
Identities = 69/220 (31%), Positives = 98/220 (44%), Gaps = 49/220 (22%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI--------AKPGVGSDLN 512
V++++ + G L + G +GSGKS+L R+L GL P SG I G L
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366
Query: 513 KEIFYVPQRPYTA---VGTLRDQLIYPLTSDQEVEPLTHGG-----MVELLKNVDL-EYL 563
+ I V Q PY++ T+ D L PL + G + ELL+ V L
Sbjct: 367 RRIQMVFQDPYSSLNPRMTVGDILAEPL----RIHGGGSGAERRARVAELLELVGLPPEF 422
Query: 564 LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA--VTT---------D 612
LDRYP ELS G++QR+ +AR +PK ILDE SA V+ D
Sbjct: 423 LDRYP--------HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKD 474
Query: 613 MEERFCAKVRAMGTSCITISHRPALVAF--HDVVLSLDGE 650
++E G + + ISH A+V + V + DG
Sbjct: 475 LQEEL-------GLTYLFISHDLAVVRYIADRVAVMYDGR 507
|
Length = 539 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 88.7 bits (221), Expect = 2e-19
Identities = 62/225 (27%), Positives = 98/225 (43%), Gaps = 44/225 (19%)
Query: 445 IEFSGVKVVTPTGN---VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
+E + V PTG +++++ ++ G L + G +GSGKS+L R + GL SG
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 502 I---------AKPGVGSDLNKEIFYVPQRPYTAVG---TLRDQLIYPLTS--DQEVEPLT 547
I + KEI V Q P +++ T+ +Q+ PL +
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEAR 121
Query: 548 HGGMVELLKNVDL-EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606
++ LL V L E +L+RYP ELS G++QR+ +AR PK I DE T
Sbjct: 122 KEAVLLLLVGVGLPEEVLNRYP--------HELSGGQRQRVAIARALALNPKLLIADEPT 173
Query: 607 SA--VTT---------DMEERFCAKVRAMGTSCITISHRPALVAF 640
SA V+ ++E G + + I+H +VA
Sbjct: 174 SALDVSVQAQILDLLKKLQEEL-------GLTLLFITHDLGVVAK 211
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 2e-19
Identities = 62/232 (26%), Positives = 98/232 (42%), Gaps = 45/232 (19%)
Query: 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI- 502
IE + V+ ++E+++L VE G + GPNG+GKS+L + + GL SG I
Sbjct: 4 MIEVENL-TVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIK 62
Query: 503 --AKPGVGSDLNKEIFYVPQR------------------PYTAVGTLRDQLIYPLTSDQE 542
KP I YVPQ+ Y G R ++
Sbjct: 63 IFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR---RLNKKDKEK 119
Query: 543 VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAIL 602
V+ E L+ V +E L DR +I ELS G++QR+ +AR P +L
Sbjct: 120 VD--------EALERVGMEDLRDR-----QI---GELSGGQKQRVLLARALAQNPDLLLL 163
Query: 603 DECTSAVTTDMEERFCA---KVRAMGTSCITISHRPALV-AFHDVVLSLDGE 650
DE + V ++ ++R G + + ++H LV A+ D V+ L+
Sbjct: 164 DEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRH 215
|
Length = 254 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 87.9 bits (219), Expect = 2e-19
Identities = 62/215 (28%), Positives = 98/215 (45%), Gaps = 38/215 (17%)
Query: 446 EFSGVKVVTPTGNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
E + P G ++++L ++ G +LI GPNGSGKS+L R+L GL SG +
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 505 PGV------GSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGM------ 551
G +L +++ V Q P DQ P T ++EV L + G+
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNP-------DDQFFGP-TVEEEVAFGLENLGLPEEEIE 112
Query: 552 ---VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
E L+ V LE L DR P LS G++QR+ +A + P +LDE T+
Sbjct: 113 ERVEEALELVGLEGLRDRSP--------FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAG 164
Query: 609 V----TTDMEERFCAKVRAMGTSCITISHRPALVA 639
+ ++ E K++A G + I ++H L+
Sbjct: 165 LDPAGRRELLELL-KKLKAEGKTIIIVTHDLDLLL 198
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 3e-19
Identities = 112/525 (21%), Positives = 200/525 (38%), Gaps = 98/525 (18%)
Query: 818 IRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSG 877
I HL RL L R +HLL+ S++ +S+ +LE++ L+G
Sbjct: 218 IAHLGKRLDLELSGRFFRHLLRL---PLSYF-----EKRSVGEIISRVRELEQIREFLTG 269
Query: 878 LVTGMVKPSVDIL----------WFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFG 927
+ ++ +D+L ++W++ + +A + +L+ L F P
Sbjct: 270 SILTLI---IDLLFALIFLAVMFLYSWKLTLIV----LAAIPLNVLITLIF----QPLLR 318
Query: 928 DLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAM-IESRFRELLEHSLL-LLKKK 985
T + + + V G KA+ E RFR ++ L +
Sbjct: 319 RKTRKLIEESA---------EQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIG 369
Query: 986 WLFGILDDFV--TKQLPHNVTWGLSLLY-----AMEHKGDRALVSTQGELAHALRFLASV 1038
+ L + K L ++ + +L+ +E + ++ G+L A LA
Sbjct: 370 FKTEKLALILNTIKSLLQQLS-SVLILWFGAILVLEGE-----LTL-GQLV-AFNMLAGY 421
Query: 1039 VSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQD 1098
+ F + + R L ++LD + E + H Q
Sbjct: 422 FISPITRLSQLWT---DFQQAKVALER---LGDILDTPP--EQEGDKTLIHLPKL---QG 470
Query: 1099 SISFSKLDI-ITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSL 1157
I F + P + L+ EI PG+ + + G +GSGKS++ ++L GL+ G +
Sbjct: 471 EIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRI 530
Query: 1158 T---KPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQII--YPLSREEAELRALKLHGKG 1212
ID + + YV Q P+ G++R+ I P + +E + A +L G
Sbjct: 531 LLDGVDLNDIDLASLRRQ-VGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAG-- 587
Query: 1213 EKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFH 1272
+++ + G Y E G AN LS G++QRL +AR
Sbjct: 588 ---------AHEFIENLPMG----YDTPVGEGG--AN------LSGGQRQRLALARALLS 626
Query: 1273 KPKFGILDECTNATSVDVEEQLYR--LAKDMGITFVTSSQRPALI 1315
KPK +LDE T+A + E + + L G T + + R + I
Sbjct: 627 KPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTI 671
|
Length = 709 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.1 bits (213), Expect = 1e-18
Identities = 50/162 (30%), Positives = 76/162 (46%), Gaps = 19/162 (11%)
Query: 456 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKE 514
++ N++L V G + ITGP+G GKS+L +++ L SG + G S L E
Sbjct: 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPE 73
Query: 515 IF-----YVPQRPYTAVGTLRDQLIYP-LTSDQEVEPLTHGGMVELLKNVDL-EYLLDRY 567
+ Y Q P T+ D LI+P ++ + ++LL L + +L
Sbjct: 74 AYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDR---AAALDLLARFALPDSILT-- 128
Query: 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
K I ELS GE+QR+ + R PK +LDE TSA+
Sbjct: 129 ---KNI---TELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164
|
Length = 223 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 1e-18
Identities = 64/206 (31%), Positives = 94/206 (45%), Gaps = 45/206 (21%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI-------AKPGVGSDLN 512
+ N++L++E G L I G +GSGKS+L R+L GL SG I A
Sbjct: 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81
Query: 513 KEIFYVPQRPYTAVGTLR--DQLIYPLTSDQEVEPLTHGGM-------VELLKNVDL-EY 562
+ + V Q PY+++ R +++ EPL G+ ELL V L
Sbjct: 82 RPVQMVFQDPYSSLNPRRTVGRILS--------EPLRPHGLSKSQQRIAELLDQVGLPPS 133
Query: 563 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV- 621
LDR P ELS G++QR+ +AR +PK ILDE TSA+ ++ A++
Sbjct: 134 FLDRRP--------HELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQ----AQIL 181
Query: 622 -------RAMGTSCITISHRPALVAF 640
+ G + + ISH ALV
Sbjct: 182 NLLLELKKERGLTYLFISHDLALVEH 207
|
Length = 252 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 2e-18
Identities = 64/238 (26%), Positives = 104/238 (43%), Gaps = 43/238 (18%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------D 510
G ++++L+ + G I GPNGSGKS+L + L GL SG + G +
Sbjct: 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKE 73
Query: 511 LNKEIFYVPQRPYTAVG-TLRD---------QLIYPLTSDQEVEPLTHGGMVELLKNVDL 560
L K++ YVPQ P G T+ + ++ S ++ E + E L+ + L
Sbjct: 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEE-----IVEEALELLGL 128
Query: 561 EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME------ 614
E+L DR DELS GE+QR+ +AR + +LDE TS + D+
Sbjct: 129 EHLADRP-------V-DELSGGERQRVLIARALAQETPILLLDEPTSHL--DIAHQIEVL 178
Query: 615 ERFCAKVRAMGTSCITISHRPALVAF--HDVVLSLDGEGEWRVHDKRDGSSVVTKSGI 670
E R G + + + H L A ++L DG ++ + V+T+ +
Sbjct: 179 ELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDG----KIVAQGTPEEVLTEENL 232
|
Length = 258 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 3e-18
Identities = 63/219 (28%), Positives = 102/219 (46%), Gaps = 20/219 (9%)
Query: 445 IEFSGVKVVTPTGN-VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
+ V +V P G + ++ ++ G L I GP+GSGKS+L R++ G+WP SG +
Sbjct: 317 LSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVR 376
Query: 504 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIY---PLTSDQEVEPLTHGGMVEL 554
G K I Y+PQ GT+ + + ++ +E G+ EL
Sbjct: 377 LDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHEL 436
Query: 555 LKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME 614
+ + Y D G LS G++QR+ +AR Y PK +LDE S + + E
Sbjct: 437 ILRLPDGY--DTVIGPG----GATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGE 490
Query: 615 ERFCA---KVRAMGTSCITISHRPALVAFHDVVLSL-DG 649
+ ++A G + + I+HRP+L+ D +L L DG
Sbjct: 491 QALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDG 529
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 4e-18
Identities = 112/528 (21%), Positives = 198/528 (37%), Gaps = 70/528 (13%)
Query: 800 LIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSID 859
L+ +++L + + L ++ R + + LL+ L SF+ +KS D
Sbjct: 58 LLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPL---SFFD----KAKSGD 110
Query: 860 ADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLG-- 917
R+T+D+E ++ +S ++ + + ++ + +L+ + + +L LL L
Sbjct: 111 LISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLS 170
Query: 918 -FLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLE 976
R + +L + E L + FG RE E EL
Sbjct: 171 LLARKSRKLSRRVREALGELNA---RLLESLSGIRV-IKAFGAEDRELKRFEEANEELRR 226
Query: 977 HSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLA 1036
+L + + L L ++ ++ L L + G L LA
Sbjct: 227 ANLRASRLEALLAPLMLLLS-----SLGTVLVLALG-------GFLVLSGSLTVGA--LA 272
Query: 1037 SVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDY 1096
+ + IL+L L L ELLD E+ ++
Sbjct: 273 AFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEE----PEVEDPPDPLKDT--- 325
Query: 1097 QDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS 1156
SI F + P +K + + ++F I PG+ + + GP+GSGKS++ ++L L+ SG
Sbjct: 326 IGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGE 385
Query: 1157 LT---KPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIY---PLSREEAELRALKLHG 1210
+ + I ++ I V Q P GT+R+ I + EE E ALKL
Sbjct: 386 ILIDGIDIRDISLDSLRK-RIGIVSQDPLLFSGTIRENIALGRPDATDEEIE-EALKL-- 441
Query: 1211 KGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI-LSLGEQQRLGMARL 1269
N + + G+D + + LS G++QRL +AR
Sbjct: 442 --------ANAHE--------------FIANLPDGYDTIVGERGVNLSGGQRQRLAIARA 479
Query: 1270 FFHKPKFGILDECTNATSVDVEEQLYRLAKDM--GITFVTSSQRPALI 1315
P ILDE T+A + E + K + G T + + R + I
Sbjct: 480 LLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTI 527
|
Length = 567 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 5e-18
Identities = 61/265 (23%), Positives = 109/265 (41%), Gaps = 33/265 (12%)
Query: 388 SLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGS----RNYFSEAN 443
+ F++ L ++++L R+ A+RI E+ ++ P GS
Sbjct: 282 AAFEAFAALPAAAQQLTRVRAAAERIVEV--------LDAAGPVAEGSAPAAGAVGLGKP 333
Query: 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
+E + P +++ ++L + PG + I GP+GSGKS+L L GL + G +
Sbjct: 334 TLELRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVT 393
Query: 504 KPGV------GSDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELL 555
GV ++ + + Q + T+R+ L P +D+E+ L
Sbjct: 394 LDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPDATDEELW--------AAL 445
Query: 556 KNVDLEYLLDRYPPEKEINWGDE---LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTD 612
+ V L L P + G+ LS GE+QRL +AR +LDE T + +
Sbjct: 446 ERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAE 505
Query: 613 MEERFCAKVRAM--GTSCITISHRP 635
+ + A G + + I+H
Sbjct: 506 TADELLEDLLAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 8e-18
Identities = 59/235 (25%), Positives = 91/235 (38%), Gaps = 45/235 (19%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA- 503
IE V V G ++ +L+ +V PG + I GPNG+GK++L +L G P SG +
Sbjct: 32 IELKNV-SVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTL 90
Query: 504 ------KPGVGSDLNKEIFYVP------QRPYTAVGTLRDQL---------IYPLTSDQE 542
K +L K I V R V RD + IY E
Sbjct: 91 LGRRFGKGETIFELRKRIGLVSSELHERFRVRETV---RDVVLSGFFASIGIYQEDLTAE 147
Query: 543 VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAIL 602
LL+ + ++L DR +G LS GEQ+R+ +AR P+ IL
Sbjct: 148 DL----AAAQWLLELLGAKHLADRP-------FGS-LSQGEQRRVLIARALVKDPELLIL 195
Query: 603 DECTSAVTTDMEERFCAKV-----RAMGTSCITISHRP--ALVAFHDVVLSLDGE 650
DE + E+ ++ + + ++H F +L +GE
Sbjct: 196 DEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGE 250
|
Length = 257 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 83.7 bits (208), Expect = 8e-18
Identities = 66/228 (28%), Positives = 103/228 (45%), Gaps = 32/228 (14%)
Query: 445 IEFSGVKVVTPTGNVLVE---NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
IE V + G VE ++ L++E G + I GP+GSGKS+L +LGGL SG
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 502 IAKPGV-GSDLN---------KEIFYVPQR----PYTAVGTLRDQLIYPLTSDQEVEPLT 547
+ G + L+ K+I +V Q P T+ + + PL +
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPD---LTVLENVELPLLIAGKSAGRR 118
Query: 548 HGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
ELL+ + LE L + P ELS G+QQR+ +AR + PK + DE T
Sbjct: 119 KRAAEELLEVLGLEDRLLKKKPS-------ELSGGQQQRVAIARALINNPKIILADEPTG 171
Query: 608 AVTTDMEERFCAKVRAM----GTSCITISHRPALVAFHDVVLSL-DGE 650
+ + + +R + G + I ++H P L + D V+ L DG+
Sbjct: 172 NLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGK 219
|
Length = 226 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 1e-17
Identities = 54/178 (30%), Positives = 79/178 (44%), Gaps = 28/178 (15%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
IE + ++ ++ +VEPG + GPNG+GK++L ++L GL SG I
Sbjct: 5 IEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILV 64
Query: 505 PGVGSDLNKE-------IFYVPQRPY-----TAVGTLRDQL-IYPLTSDQEVEPLTHGGM 551
G D+ KE I YVPQ P T L +Y L+ ++ E +
Sbjct: 65 LGY--DVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIE---- 118
Query: 552 VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
ELL+ LE ++ LS G +QRL +A H P+ ILDE TS +
Sbjct: 119 -ELLELFGLEDKANKKV--------RTLSGGMKQRLSIALALLHDPELLILDEPTSGL 167
|
Length = 293 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 2e-17
Identities = 63/259 (24%), Positives = 91/259 (35%), Gaps = 47/259 (18%)
Query: 1061 GGINRIFELEELLDAAQPGDDEISGSSQH-KWNSTDYQDSISFSKLDIITPSQKLLARQL 1119
+++F L E P SG IS L P K L
Sbjct: 289 AAADKLFTLLE-----SPVATPGSGEKAEVANEP---PIEISLENLSFRYPDGKPALSDL 340
Query: 1120 TFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCGIFY 1176
I G+ + G +G+GKS++ +L G G + + + EA I +
Sbjct: 341 NLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRK-QISW 399
Query: 1177 VPQRPYTCLGTLRDQI-IYPLSREEAEL-RALKLHGKGEKLVDTTNILDSYLKTILEGVR 1234
V Q PY GT+R+ I + + E+ AL G E V + LD+ I EG
Sbjct: 400 VSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLE-FVPKPDGLDT---VIGEGGA 455
Query: 1235 LSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVE--- 1291
LS G+ QRL +AR +LDE T +D E
Sbjct: 456 G--------------------LSGGQAQRLALARALLSPASLLLLDEPT--AHLDAETEQ 493
Query: 1292 ---EQLYRLAKDMGITFVT 1307
+ L LAK + +T
Sbjct: 494 IILQALQELAKQKTVLVIT 512
|
Length = 559 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 2e-17
Identities = 55/195 (28%), Positives = 90/195 (46%), Gaps = 28/195 (14%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---AKPGVGSDLNK 513
G ++++L+L + G + +TG NG+GK++L ++L GL SG I KP + K
Sbjct: 12 GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRK 71
Query: 514 EIFYVPQRPYTAVG--TLRDQLIY--PLTSD--QEVEPLTHGGMVELLKNVDLEYLLDRY 567
I YV Q + ++R++L+ ++ E +LK++DL L +R+
Sbjct: 72 SIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAE--------TVLKDLDLYALKERH 123
Query: 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR---AM 624
P LS G++QRL +A I DE TS + ER +R A
Sbjct: 124 P--------LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQ 175
Query: 625 GTSCITISHRPALVA 639
G + I I+H +A
Sbjct: 176 GKAVIVITHDYEFLA 190
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 5e-17
Identities = 60/222 (27%), Positives = 103/222 (46%), Gaps = 30/222 (13%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI-- 502
IE + P +++++L++E G +L+ GPNGSGKS+L ++L GL SG +
Sbjct: 4 IEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLV 63
Query: 503 -----AKPGVGSDLNKEIFYVPQRPYT--AVGTLRDQLIYPLT----SDQEVEPLTHGGM 551
+ +L +++ V Q P T+ D++ + L +E+E
Sbjct: 64 DGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVA--- 120
Query: 552 VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTT 611
E L+ V LE LLDR P LS G++QR+ +A + P+ +LDE T+ +
Sbjct: 121 -EALELVGLEELLDRPP--------FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDP 171
Query: 612 DMEERFCAKVRAM----GTSCITISHRPALVAFH-DVVLSLD 648
++ + G + I ++H LV + D V+ LD
Sbjct: 172 KGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLD 213
|
Length = 235 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 78.6 bits (195), Expect = 2e-16
Identities = 54/195 (27%), Positives = 81/195 (41%), Gaps = 55/195 (28%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV------GSD 510
G ++++L+L +E G + I GPNG+GKS+L + L GL SG I G +
Sbjct: 11 GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKE 70
Query: 511 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPE 570
L ++I YVPQ L+ + L +L DR
Sbjct: 71 LARKIAYVPQ---------------------------------ALELLGLAHLADRPF-- 95
Query: 571 KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME------ERFCAKVRAM 624
+ELS GE+QR+ +AR +P +LDE TS + D+ E R
Sbjct: 96 ------NELSGGERQRVLLARALAQEPPILLLDEPTSHL--DIAHQIELLELLRRLARER 147
Query: 625 GTSCITISHRPALVA 639
G + + + H L A
Sbjct: 148 GKTVVMVLHDLNLAA 162
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 84.1 bits (209), Expect = 2e-16
Identities = 73/261 (27%), Positives = 114/261 (43%), Gaps = 44/261 (16%)
Query: 390 FQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSG 449
FQ LG I+S A RI+E+ E++ S + + +
Sbjct: 301 FQHLGQ-VIAS---------ARRINEITEQKPEVTFPTTSTAAADQVS-------LTLNN 343
Query: 450 VKVVTPTGNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG 508
V P V + L+L+++ G + + G G GKS+L ++L W G I G
Sbjct: 344 VSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQP 403
Query: 509 ------SDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELLKNVDL 560
+ L + I V QR + TLRD L+ P SD+ ++E+L+ V L
Sbjct: 404 IADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEA--------LIEVLQQVGL 455
Query: 561 EYLLDRYPPEKEIN-W----GDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 615
E LL+ +K +N W G +LS GEQ+RLG+AR H +LDE T + + E
Sbjct: 456 EKLLED---DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETER 512
Query: 616 RFCAKVR--AMGTSCITISHR 634
+ + A + + I+HR
Sbjct: 513 QILELLAEHAQNKTVLMITHR 533
|
Length = 574 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 2e-16
Identities = 69/215 (32%), Positives = 103/215 (47%), Gaps = 17/215 (7%)
Query: 445 IEFSGVKV-VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
IEF V + P +++N++ ++PG + I G GSGKSSL L L L SG I
Sbjct: 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSIL 62
Query: 504 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQL-IYPLTSDQEV-EPLTHGGMVELL 555
GV DL I +PQ P GT+R L + SD+E+ + L G+ E +
Sbjct: 63 IDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFV 122
Query: 556 KNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 615
++ L LD G+ LS+G++Q L +AR K K +LDE T++V + +
Sbjct: 123 ES--LPGGLD----TVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 176
Query: 616 RFCAKVRAMGTSC--ITISHRPALVAFHDVVLSLD 648
+R C +TI+HR + D +L LD
Sbjct: 177 LIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLD 211
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 8e-16
Identities = 57/207 (27%), Positives = 97/207 (46%), Gaps = 18/207 (8%)
Query: 455 PTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------ 508
+++ ++ ++ G L I GP+GSGKS+L R+L G+WP SG + G
Sbjct: 346 GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDR 405
Query: 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYP 568
L + I Y+PQ GT+ + I + + E ++E + + L+ R P
Sbjct: 406 EQLGRHIGYLPQDVELFDGTIA-ENIARFGEEADPE-----KVIEAARLAGVHELILRLP 459
Query: 569 PEKEINWGDE---LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME---ERFCAKVR 622
+ G+ LS G++QR+ +AR Y P +LDE S + ++ E +
Sbjct: 460 QGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAK 519
Query: 623 AMGTSCITISHRPALVAFHDVVLSLDG 649
A G + + I+HRP+ +A D +L L
Sbjct: 520 ARGGTVVVIAHRPSALASVDKILVLQD 546
|
Length = 580 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 8e-16
Identities = 66/203 (32%), Positives = 100/203 (49%), Gaps = 26/203 (12%)
Query: 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502
N IEF V + G +++++++K E G+ I GP+G+GKS+L +++ L G I
Sbjct: 2 NEIEFKEVSY-SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI 60
Query: 503 AKPGVGS------DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLK 556
GV DL ++I V Q+P+ GT++D + Y G M++ K
Sbjct: 61 LIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEY-------------GPMLKGEK 107
Query: 557 NVDLEYLLDRYPPEKEINWGD--ELSLGEQQRLGMARLFYHKPKFAILDECTSAV----T 610
NVD+EY L KE D LS GE QR+ +AR + P+ +LDE TSA+ T
Sbjct: 108 NVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTST 167
Query: 611 TDMEERFCAKVRAMGTSCITISH 633
+EE M + I I+H
Sbjct: 168 EIIEELIVKLKNKMNLTVIWITH 190
|
Length = 241 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 1e-15
Identities = 59/204 (28%), Positives = 94/204 (46%), Gaps = 44/204 (21%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGC-GIFYV 1177
++FE+ PG+ + GPNG+GK+++ ++L GL SG + + +E I YV
Sbjct: 24 VSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYV 83
Query: 1178 PQRP--YTCLGTLRDQI-----IYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTIL 1230
PQ P Y L T+R+ + +Y LS+EEAE R E+L++ L+ +
Sbjct: 84 PQEPSLYPEL-TVRENLEFFARLYGLSKEEAEERI-------EELLELFG-LEDKANKKV 134
Query: 1231 EGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTN----AT 1286
LS G +QRL +A H P+ ILDE T+ +
Sbjct: 135 RT-----------------------LSGGMKQRLSIALALLHDPELLILDEPTSGLDPES 171
Query: 1287 SVDVEEQLYRLAKDMGITFVTSSQ 1310
++ E L LAK+ G+T + S+
Sbjct: 172 RREIWELLRELAKEGGVTILLSTH 195
|
Length = 293 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 2e-15
Identities = 65/265 (24%), Positives = 102/265 (38%), Gaps = 47/265 (17%)
Query: 1056 FVELSGGINRIFELEELLDA---AQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQ 1112
F L I L ++LD D++ + + Q ++ + P Q
Sbjct: 300 FQHLGQVIASARRLNDILDQKPEVTFPDEQTATTGQ----------ALELRNVSFTYPGQ 349
Query: 1113 KLLARQ-LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEA 1168
+ A + + G+ + + G +GSGKS++ ++L G W GS+T +DE+A
Sbjct: 350 QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQA 409
Query: 1169 GSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKT 1228
I + QR + GTLRD + + + D L
Sbjct: 410 LRE-TISVLTQRVHLFSGTLRDNL----------------------RLANPDASDEELWA 446
Query: 1229 ILEGVRLSYLLEREEVGWDANLNWED--ILSLGEQQRLGMARLFFHKPKFGILDECTNAT 1286
L+ V L LLE G + L E LS GE++RL +AR H +LDE T
Sbjct: 447 ALQQVGLEKLLESAPDGLNTWLG-EGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGL 505
Query: 1287 SVDVEEQLYRL----AKDMGITFVT 1307
E Q+ L A+ + VT
Sbjct: 506 DPITERQVLALLFEHAEGKTLLMVT 530
|
Length = 573 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 2e-15
Identities = 59/210 (28%), Positives = 97/210 (46%), Gaps = 26/210 (12%)
Query: 455 PTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---AKPGVGSD- 510
P VL ++++ + PG + GP+GSGKS++ +L + G + KP +
Sbjct: 25 PDTLVL-QDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEH 83
Query: 511 --LNKEIFYVPQRPYTAVGTLRDQLIYPLT--SDQEVEPL-----THGGMVELLKNVDLE 561
L+ ++ V Q P +L+D + Y L S + V+ H + EL D E
Sbjct: 84 KYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTE 143
Query: 562 YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV 621
EK G +LS G++QR+ +AR P+ ILDE TSA+ + E++ +
Sbjct: 144 V------GEK----GSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQAL 193
Query: 622 RA--MGTSCITISHRPALVAFHDVVLSLDG 649
+ + I+HR + V D +L LDG
Sbjct: 194 YDWPERRTVLVIAHRLSTVERADQILVLDG 223
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 4e-15
Identities = 71/233 (30%), Positives = 99/233 (42%), Gaps = 57/233 (24%)
Query: 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP----L 497
+E + V T V +++ +VEPG L I G +GSGKS+L L GL P +
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 498 VSGHIAKPGVG-SDLN---------KEIFYVPQRPYTA---VGTLRDQLIYPLTSDQEVE 544
SG + G L+ K I + Q P T+ V T+ DQ+ E
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIR-------EA- 117
Query: 545 PLTHGGM---------VELLKNVDLEY--LLDRYPPEKEINWGDELSLGEQQRLGMARLF 593
HG VELL+ V L DRYP +LS G +QR+ +A
Sbjct: 118 LRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPH--------QLSGGMRQRVMIAMAL 169
Query: 594 YHKPKFAILDECTSA--VTT-----DMEERFCAKVRAMGTSCITISHRPALVA 639
KPK I DE T+A VTT D+ + R +G + + I+H +VA
Sbjct: 170 ALKPKLLIADEPTTALDVTTQAQILDLLKDLQ---RELGMAVLFITHDLGVVA 219
|
Length = 539 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 75.2 bits (186), Expect = 4e-15
Identities = 54/212 (25%), Positives = 89/212 (41%), Gaps = 43/212 (20%)
Query: 456 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEI 515
+ ++++ L+V G + I GP GSGKSSL L G +SG ++ + I
Sbjct: 16 ETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVS-------VPGSI 68
Query: 516 FYVPQRPYTAVGTLRDQLIYPLTSDQE--------------VEPLTHGGMVELLKNVDLE 561
YV Q P+ GT+R+ +++ D+E +E L G + E+
Sbjct: 69 AYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEI------- 121
Query: 562 YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV 621
EK IN LS G++QR+ +AR Y +LD+ SAV +
Sbjct: 122 -------GEKGIN----LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENC 170
Query: 622 ----RAMGTSCITISHRPALVAFHDVVLSLDG 649
+ I ++H+ L+ D ++ LD
Sbjct: 171 ILGLLLNNKTRILVTHQLQLLPHADQIVVLDN 202
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 5e-15
Identities = 62/217 (28%), Positives = 100/217 (46%), Gaps = 21/217 (9%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
IEF V G ++++++ + G + I GP+GSGKS++ R+L + + SG I
Sbjct: 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI 60
Query: 505 PGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELLK 556
G L + I VPQ T+ + Y P +D+EV E K
Sbjct: 61 DGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVI--------EAAK 112
Query: 557 NVDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 613
+ + R+P + G+ +LS GE+QR+ +AR P +LDE TSA+ T
Sbjct: 113 AAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHT 172
Query: 614 EERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLD 648
E A +R + G + I I+HR + + D ++ L
Sbjct: 173 EREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLK 209
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 1e-14
Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 19/203 (9%)
Query: 445 IEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502
IEF V P+ +++ L+L + PG + + G +G GKS++ +L + SG I
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 503 AKPGVG-SDLN-----KEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLK 556
GV DLN +I V Q P GT+ + + Y + E + E K
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEE------VEEAAK 114
Query: 557 NVDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 613
++ + P + G+ +LS G++QR+ +AR PK +LDE TSA+ +
Sbjct: 115 KANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAES 174
Query: 614 EERFCAKV-RAM-GTSCITISHR 634
E+ + RAM G + I I+HR
Sbjct: 175 EKLVQEALDRAMKGRTTIVIAHR 197
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 2e-14
Identities = 62/227 (27%), Positives = 99/227 (43%), Gaps = 35/227 (15%)
Query: 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT 1158
S+ FS + + P ++ R ++F + PG+ + + GP+G+GKS++ +L G GS+
Sbjct: 321 SLEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIA 380
Query: 1159 ---KPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQI-IYPLSREEAEL-RALKLHGKGE 1213
P D I +VPQ P+ GT+ + I + +AE+ AL+ G
Sbjct: 381 VNGVPLADAD-ADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAG--- 436
Query: 1214 KLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHK 1273
LD ++ + +G L + G LS G+ QRL +AR F
Sbjct: 437 --------LDEFVAALPQG--LDTPIGEGGAG----------LSGGQAQRLALARAFLRD 476
Query: 1274 PKFGILDECT----NATSVDVEEQLYRLAKDMGITFVTSSQRPALIP 1316
+LDE T T +V E L LA+ G T + + R AL
Sbjct: 477 APLLLLDEPTAHLDAETEAEVLEALRALAQ--GRTVLLVTHRLALAA 521
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 2e-14
Identities = 56/198 (28%), Positives = 93/198 (46%), Gaps = 35/198 (17%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
+++L+L VEPG L + GP+G GK++L R++ GL SG I G +++
Sbjct: 12 SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDG------RDVT 65
Query: 517 YVP--QRPYTAVG------------TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY 562
VP +R +G T+ + + + L + + ELL+ V LE
Sbjct: 66 GVPPERRN---IGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEG 122
Query: 563 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR 622
LL+RYP ELS G+QQR+ +AR +P +LDE SA+ + E +++
Sbjct: 123 LLNRYP--------HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELK 174
Query: 623 AM----GTSCITISHRPA 636
+ G + I ++H
Sbjct: 175 ELQRELGITTIYVTHDQE 192
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 2e-14
Identities = 52/177 (29%), Positives = 77/177 (43%), Gaps = 28/177 (15%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
G VL L+ + G L++TGPNGSGK++L R++ GL P +G I G D
Sbjct: 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPD--- 70
Query: 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPL--------THGGMV-ELLKNVDLEYLLDRY 567
Y +G R+ + LT E L + L+ V L L
Sbjct: 71 VAEACHY--LGH-RNAMKPALTV---AENLEFWAAFLGGEELDIAAALEAVGLAPLAHL- 123
Query: 568 PPEKEINWGDELSLGEQQRLGMARLF-YHKPKFAILDECTSAVTTDMEERFCAKVRA 623
P LS G+++R+ +ARL ++P + ILDE T+A+ F +RA
Sbjct: 124 -PFG------YLSAGQKRRVALARLLVSNRPIW-ILDEPTAALDAAAVALFAELIRA 172
|
Length = 207 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 2e-14
Identities = 57/217 (26%), Positives = 102/217 (47%), Gaps = 18/217 (8%)
Query: 445 IEFSGVKV-VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
I F V+ P G V+++N++L+++PG + I G +GSGKS+L +++ + +G +
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 504 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQ--LIYPLTSDQEVEPLTH-GGMVEL 554
G + L +++ V Q ++RD L P S + V G +
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDF 120
Query: 555 LKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME 614
+ + Y D E+ G LS G++QR+ +AR H P+ I DE TSA+ + E
Sbjct: 121 ISELPEGY--DTIVGEQ----GAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESE 174
Query: 615 ERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDG 649
+ + G + I I+HR + V D ++ ++
Sbjct: 175 HAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEK 211
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 72.5 bits (179), Expect = 4e-14
Identities = 47/175 (26%), Positives = 70/175 (40%), Gaps = 33/175 (18%)
Query: 445 IEFSGVKVVTPTGN---VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
+E V G +E+++L VE G + + GP+G GKS+L R++ GL SG
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 502 IA---KPGVGSDLNKEIFYVPQRPY-----TAVGTLRDQLIYPLT----SDQEVEPLTHG 549
+ +P G + YV Q+ T D + L E
Sbjct: 61 VLVDGEPVTGP--GPDRGYVFQQDALLPWLTV----LDNVALGLELQGVPKAEARERAE- 113
Query: 550 GMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
ELL+ V L + YP +LS G +QR+ +AR P +LDE
Sbjct: 114 ---ELLELVGLSGFENAYP--------HQLSGGMRQRVALARALAVDPDVLLLDE 157
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 8e-14
Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 35/194 (18%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VS 499
IE + V + L ++++L + G + GP+G GKS+L R+L L L
Sbjct: 1 IELRDLNVYYGDKHAL-KDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDE 59
Query: 500 GHI--------AKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT-----SDQEVEPL 546
G + +L + + V Q+P G++ D + Y L +E++
Sbjct: 60 GEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDER 119
Query: 547 THGGMVELLKNVDL-EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDEC 605
+ E L+ L + + DR LS G+QQRL +AR ++P+ +LDE
Sbjct: 120 ----VEEALRKAALWDEVKDRLH-------ALGLSGGQQQRLCLARALANEPEVLLLDEP 168
Query: 606 TSAV----TTDMEE 615
TSA+ T +EE
Sbjct: 169 TSALDPISTAKIEE 182
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 9e-14
Identities = 72/269 (26%), Positives = 117/269 (43%), Gaps = 38/269 (14%)
Query: 408 GYADRIHELMVISRELSIEDKSPQ--RNGSRNYFSEANYIEFSGVKVVTPT-GNVLV-EN 463
G ++++ E + D+ P G+ + IEF V P +V V +
Sbjct: 449 GASEKVFEYL---------DRKPNIPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKG 499
Query: 464 LTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---AKPGVGSD---LNKEIFY 517
LT + PG + + GP+GSGKS++ +L L+ G + P V D L++++
Sbjct: 500 LTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVAL 559
Query: 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLT-------HGGMVELLKNVDLEYLLDRYPPE 570
V Q P G++R+ + Y LT + E + H ++E D E E
Sbjct: 560 VGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEV------GE 613
Query: 571 KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCIT 630
K G +LS G++QR+ +AR KP+ ILDE TSA+ + E+ + +
Sbjct: 614 K----GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLL 669
Query: 631 ISHRPALV--AFHDVVLSLDGEGEWRVHD 657
I+HR + V A +VL E H
Sbjct: 670 IAHRLSTVERADQILVLKKGSVVEMGTHK 698
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 1e-13
Identities = 55/188 (29%), Positives = 81/188 (43%), Gaps = 38/188 (20%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPG-SNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
++ + L ++L + PG LL GPNG+GK++L R+L L P SG I
Sbjct: 1 LQLENLTKRYGKKRALD-GVSLTLGPGMYGLL--GPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 504 KPGV-----GSDLNKEIFYVPQ--RPYTAVGTLRDQLIY--------PLTSDQEVEPLTH 548
G L + I Y+PQ Y T+R+ L Y V+
Sbjct: 58 IDGQDVLKQPQKLRRRIGYLPQEFGVYPNF-TVREFLDYIAWLKGIPSKEVKARVD---- 112
Query: 549 GGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
E+L+ V+L DR +K+I LS G ++R+G+A+ P I+DE T
Sbjct: 113 ----EVLELVNLG---DRA--KKKIG---SLSGGMRRRVGIAQALVGDPSILIVDEPT-- 158
Query: 609 VTTDMEER 616
D EER
Sbjct: 159 AGLDPEER 166
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 1e-13
Identities = 52/212 (24%), Positives = 94/212 (44%), Gaps = 29/212 (13%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI-- 502
I F V P G + +++ + G + +TGP+G+GKS+L +++ G G I
Sbjct: 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILV 61
Query: 503 AKPGVGSDLNKEIFYVPQRPYTAVGTL-RD-QLIYPLTSDQEVE-PLTHGGM-------- 551
+ +EI ++ ++ +G + +D +L+ T + V PL G
Sbjct: 62 NGHDLSRLKGREIPFLRRQ----IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRR 117
Query: 552 -VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 610
E+L V L++ P +LS GEQQR+ +AR ++P + DE T +
Sbjct: 118 VSEVLDLVGLKHKARALP--------SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLD 169
Query: 611 TDMEE---RFCAKVRAMGTSCITISHRPALVA 639
D+ R ++ +GT+ + +H LV
Sbjct: 170 PDLSWEIMRLFEEINRLGTTVLMATHDLELVN 201
|
Length = 223 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 1e-13
Identities = 61/224 (27%), Positives = 102/224 (45%), Gaps = 34/224 (15%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
IEF V P G + +++L + G L +TGP+G+GK++L ++L G G +
Sbjct: 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRI 61
Query: 505 PGVGSDLN----KEIFYVPQRPYTAVGT-------LRDQLIY-----PLTSDQEVEPLTH 548
G D+N +++ + +R +G L D+ +Y PL + E
Sbjct: 62 --AGEDVNRLRGRQLPLLRRR----IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQ 115
Query: 549 GGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
+ L+ V LE+ D +P ++LS GEQQR+ +AR + P + DE T
Sbjct: 116 RRVGAALRQVGLEHKADAFP--------EQLSGGEQQRVAIARAIVNSPPLLLADEPTGN 167
Query: 609 VTTDMEERFCA---KVRAMGTSCITISHRPALV-AFHDVVLSLD 648
+ D+ ER ++ GT+ I +H +LV V+ LD
Sbjct: 168 LDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILD 211
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 2e-13
Identities = 45/187 (24%), Positives = 72/187 (38%), Gaps = 42/187 (22%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGC------ 1172
+ F I PG+++ + GP G+GK+++ +L + G + ID
Sbjct: 22 INFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQIL-----IDGIDIRDISRKSLR 76
Query: 1173 -GIFYVPQRPYTCLGTLRDQIIY--PLSREEAELRALKLHGKGEKLVDTTNILDSYLKTI 1229
I V Q + GT+ + I P + +E + A K
Sbjct: 77 SMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKE--------------------- 115
Query: 1230 LEGVRLSYLLEREEVGWDANLNWE-DILSLGEQQRLGMARLFFHKPKFGILDECTNATSV 1288
+ + G+D L LS GE+Q L +AR PK ILDE T +++
Sbjct: 116 ---AGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEAT--SNI 170
Query: 1289 DVE-EQL 1294
D E E+L
Sbjct: 171 DTETEKL 177
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 2e-13
Identities = 64/229 (27%), Positives = 103/229 (44%), Gaps = 41/229 (17%)
Query: 1100 ISFSKLDIITP-SQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT 1158
+S + I+ P +K R ++F + G++L + GP+GSGKS++ R++ G+WP SGS+
Sbjct: 317 LSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVR 376
Query: 1159 KPSQHID----EEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEK 1214
+ E G G Y+PQ GT+ + I +R K
Sbjct: 377 LDGADLKQWDRETFGKHIG--YLPQDVELFPGTVAENI----ARFGENADPEK------- 423
Query: 1215 LVDTTNILDSYLKTILEGVRLS---YLLEREEVGWDANLNWEDI-LSLGEQQRLGMARLF 1270
I+E +L+ L+ R G+D + LS G++QR+ +AR
Sbjct: 424 --------------IIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARAL 469
Query: 1271 FHKPKFGILDECTNATSVDVEEQ-LYRL---AKDMGITFVTSSQRPALI 1315
+ PK +LDE N+ + EQ L K GIT V + RP+L+
Sbjct: 470 YGDPKLVVLDE-PNSNLDEEGEQALANAIKALKARGITVVVITHRPSLL 517
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 2e-13
Identities = 47/182 (25%), Positives = 78/182 (42%), Gaps = 30/182 (16%)
Query: 445 IEFSGVKVVTPTGN----VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG 500
IE V +++++L++ G I G +G+GKS+L R++ L SG
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 501 HIAKPGVGSD---------LNKEIFYVPQRP-YTAVGTLRDQLIYPL----TSDQEVEPL 546
+ G L ++I + Q + T+ + + +PL E++
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQR 121
Query: 547 THGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606
ELL+ V L DRYP +LS G++QR+ +AR + PK + DE T
Sbjct: 122 VA----ELLELVGLSDKADRYP--------AQLSGGQKQRVAIARALANNPKILLCDEAT 169
Query: 607 SA 608
SA
Sbjct: 170 SA 171
|
Length = 339 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 3e-13
Identities = 55/192 (28%), Positives = 84/192 (43%), Gaps = 31/192 (16%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSD-----L 511
G L L+ + G L +TGPNGSGK++L R+L GL P ++G + G D +
Sbjct: 12 GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSI 71
Query: 512 NKEIFYVPQRP-----YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 566
+ + Y+ P + + LR + SD++VE E L V L DR
Sbjct: 72 ARGLLYLGHAPGIKTTLSVLENLR--FWHADHSDEQVE--------EALARVGLNGFEDR 121
Query: 567 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR---A 623
+LS G+Q+R+ +ARL ILDE T+A+ RF + A
Sbjct: 122 P--------VAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCA 173
Query: 624 MGTSCITISHRP 635
G + +H+
Sbjct: 174 RGGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 3e-13
Identities = 129/590 (21%), Positives = 232/590 (39%), Gaps = 89/590 (15%)
Query: 95 LLSEMGKMGARDLLALVGIVVLRTALSNRLAKV-----QGFLFR-AAFLRRVPLFFQLIS 148
L S + A +LA V ++++ S A + GF R + L VPL
Sbjct: 5 LWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVV---- 60
Query: 149 ENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRIT-HPE 207
I L L S Y+ +S K+V I R FE + +S D + T
Sbjct: 61 --IGLAVLRGICSFVSTYLLSWVS---NKVVRD-IRVRMFEKLLGLPVSFFDRQPTGTLL 114
Query: 208 QRLASDVPRFCSELSE----LVQDDLTAVTDGLL-----YTWRLCSYASPKYVFWILAYV 258
R+ D + S ++ LV++ LT + GL Y+W+L + ++ V
Sbjct: 115 SRITFDSEQVASAATDAFIVLVRETLTVI--GLFIVLLYYSWQL------TLIVVVMLPV 166
Query: 259 LGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFK 318
L +MR S ++ + Q G+ + + +GG+ E ++F
Sbjct: 167 LSI--LMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYE----TRRFD 220
Query: 319 ALTRH-----MRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRA 373
A++ M++ + Q L+ L +AV+L I F A + T G
Sbjct: 221 AVSNRNRRLAMKMTSAGSISSPITQ--LIASLA--LAVVLFIALFQAQA---GSLTAG-- 271
Query: 374 KMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRN 433
+ + +I+L + L +L+ + + R A+ + L+ E ++ +R
Sbjct: 272 ----DFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERA 327
Query: 434 GSRNYFSEANYIEFSGVKVVTP-TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLG 492
+EF V P +++++L +EPG + + G +GSGKS+L ++
Sbjct: 328 RGD--------VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIP 379
Query: 493 GLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLT---SDQEV 543
+ SG I G + L +++ V Q T+ + + Y T E+
Sbjct: 380 RFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEI 439
Query: 544 EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDE---LSLGEQQRLGMARLFYHKPKFA 600
E L + +D+ P + G+ LS G++QRL +AR
Sbjct: 440 E--------RALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPIL 491
Query: 601 ILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLD 648
ILDE TSA+ + E A + + G + + I+HR + + D ++ +D
Sbjct: 492 ILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMD 541
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 4e-13
Identities = 67/226 (29%), Positives = 94/226 (41%), Gaps = 52/226 (23%)
Query: 450 VKVVTPTGNV-LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV- 507
V T G V V+ ++ +++ G L I G +GSGKS L + + GL P + I +
Sbjct: 9 VSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEIL 68
Query: 508 --GSDLN------------KEIFYVPQRPYTA---VGTLRDQLIYPLTSDQEVEPLTHGG 550
G DL KEI + Q P T+ V T+ DQ+ L HG
Sbjct: 69 FDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVL--------RLHGK 120
Query: 551 M----------VELLKNVDL---EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597
+ELL+ V + E L YP ELS G +QR+ +A P
Sbjct: 121 GLSKKEAKERAIELLELVGIPDPERRLKSYP--------HELSGGMRQRVMIAMALALNP 172
Query: 598 KFAILDECTSA--VTT--DMEERFCAKVRAMGTSCITISHRPALVA 639
K I DE T+A VT + + R GT+ I I+H +VA
Sbjct: 173 KLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVA 218
|
Length = 316 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 4e-13
Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 22/204 (10%)
Query: 445 IEFSGVKV-VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
+EF V G ++ +++L + G + + GP+GSGKS+L ++ + + SG I
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 504 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELL 555
G + L ++I V Q + T+ + + Y P + +EVE E
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVE--------EAA 112
Query: 556 KNVDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTD 612
+ + + P + G+ +LS G++QR+ +AR P ILDE TSA+ T+
Sbjct: 113 RAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTE 172
Query: 613 MEERFCAKVRAM--GTSCITISHR 634
E A + + + I+HR
Sbjct: 173 SERLVQAALERLMKNRTTFVIAHR 196
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 5e-13
Identities = 65/228 (28%), Positives = 92/228 (40%), Gaps = 46/228 (20%)
Query: 440 SEANYIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW 495
N IE + G ++L + + L V+ G + I GP+GSGKS+L VL GL
Sbjct: 2 PAENIIEVHHLSKTVGQGEGELSIL-KGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLD 60
Query: 496 PLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRD----------QLIYPLTSDQEVE- 544
SG + +G L+ + A LR LI LT+ + V
Sbjct: 61 DPSSGEVRL--LGQPLH-------KLDEDARAALRARHVGFVFQSFHLIPNLTALENVAL 111
Query: 545 PLTHGGMV---------ELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595
PL G LL+ V L L YP +LS GEQQR+ +AR F
Sbjct: 112 PLELRGESSADSRAGAKALLEAVGLGKRLTHYP--------AQLSGGEQQRVALARAFAG 163
Query: 596 KPKFAILDECTSAVTTDMEERFC----AKVRAMGTSCITISHRPALVA 639
+P DE T + ++ A R GT+ + ++H P L A
Sbjct: 164 RPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAA 211
|
Length = 228 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 7e-13
Identities = 51/206 (24%), Positives = 87/206 (42%), Gaps = 40/206 (19%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176
+ ++ +I G+ + GP+G GKS++ R+L L ++ G + + +
Sbjct: 17 KDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPG--APDEGEVLLDGKDIYDLDV 74
Query: 1177 VP-----------QRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSY 1225
Q+P G++ D + Y L +LHG K LD
Sbjct: 75 DVLELRRRVGMVFQKPNPFPGSIYDNVAYGL----------RLHGIKLK-----EELDER 119
Query: 1226 LKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNA 1285
++ L L +EV L+ LS G+QQRL +AR ++P+ +LDE T+A
Sbjct: 120 VEEALRKAALW-----DEV--KDRLHALG-LSGGQQQRLCLARALANEPEVLLLDEPTSA 171
Query: 1286 ----TSVDVEEQLYRLAKDMGITFVT 1307
++ +EE + L K+ I VT
Sbjct: 172 LDPISTAKIEELIAELKKEYTIVIVT 197
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 7e-13
Identities = 51/166 (30%), Positives = 73/166 (43%), Gaps = 19/166 (11%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
+E GV VL E++ L VE G + I GP+G GKS+L R++ GL SG +
Sbjct: 4 LEIEGVSKSFGGVEVL-EDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLL 62
Query: 505 PG-VGSDLNKEIFYVPQRPY-----TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV 558
G + +I YV Q T D + L + + ELL+ V
Sbjct: 63 DGRPVTGPGPDIGYVFQEDALLPWLTV----LDNVALGLELRGKSKAEARERAKELLELV 118
Query: 559 DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
L D+YP +LS G +QR+ +AR +PK +LDE
Sbjct: 119 GLAGFEDKYP--------HQLSGGMRQRVAIARALATRPKLLLLDE 156
|
Length = 248 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 7e-13
Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 32/197 (16%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKE 514
++N++ KV+ G + I G G+GKS+L L G I G+ DL
Sbjct: 24 LKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83
Query: 515 IFYVPQRPYTAVGTLRDQL-IYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI 573
+ +PQ P GT+R L + SD+E+ Y +
Sbjct: 84 LTIIPQDPTLFSGTIRSNLDPFDEYSDEEI-----------------------YGALRVS 120
Query: 574 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITI 631
G LS G++Q L +AR +P+ +LDE T+++ + +R ++ +TI
Sbjct: 121 EGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTI 180
Query: 632 SHRPALVAFHDVVLSLD 648
+HR + +D +L +D
Sbjct: 181 AHRLRTIIDYDKILVMD 197
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 67.8 bits (167), Expect = 7e-13
Identities = 48/183 (26%), Positives = 76/183 (41%), Gaps = 55/183 (30%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV-----GSDLNKEI 515
+++++L VE G + GPNG+GK++L +++ GL SG I G ++ + I
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRI 75
Query: 516 FYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINW 575
Y+P+ P L LT V E L
Sbjct: 76 GYLPEEPS---------LYENLT----VR----------------ENL------------ 94
Query: 576 GDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER-----FCAKVRAMGTSCIT 630
+LS G +QRL +A+ H P+ ILDE TS + D E R +++ G + +
Sbjct: 95 --KLSGGMKQRLALAQALLHDPELLILDEPTSGL--DPESRREFWELLRELKKEGKTILL 150
Query: 631 ISH 633
SH
Sbjct: 151 SSH 153
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 8e-13
Identities = 68/264 (25%), Positives = 122/264 (46%), Gaps = 20/264 (7%)
Query: 383 TSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEA 442
S++ S + + L L L G +R+ +++ + +E++ GS +
Sbjct: 416 QSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLS 475
Query: 443 NYIEFSGVKV-VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
Y+E + +P L+EN +L ++PG + + G +GSGKS++ +++ GL+ SG
Sbjct: 476 GYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGE 535
Query: 502 IAKPGVG-SDLNKEIF-----YVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVE 553
I G+ ++ +E+ V Q + GT+RD L P D + +V
Sbjct: 536 ILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDAD--------LVR 587
Query: 554 LLKNVDLEYLLDRYPPEKE---INWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 610
K+ + ++ P + G LS G++QRL +AR P ILDE TSA+
Sbjct: 588 ACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALD 647
Query: 611 TDMEERFCAKVRAMGTSCITISHR 634
+ E+ +R G +CI ++HR
Sbjct: 648 PETEKIIDDNLRRRGCTCIIVAHR 671
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 8e-13
Identities = 59/211 (27%), Positives = 96/211 (45%), Gaps = 38/211 (18%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
+E V+ + VL +++ L +E G +++ GP+G GKS+L R++ GL SG I
Sbjct: 4 LELKNVRKSFGSFEVL-KDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILI 62
Query: 505 PG-VGSDLNKE---IFYVPQRPYTAV---GTLRDQLIYPLTS--------DQEVEPLTHG 549
G +DL E I V Q A+ T+ + + + L D+ V+
Sbjct: 63 DGRDVTDLPPEKRGIAMVFQNY--ALYPHMTVYENIAFGLKLRGVPKAEIDKRVK----- 115
Query: 550 GMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
E+ K + LE+LL+R P +LS G++QR+ +AR KPK +LDE S +
Sbjct: 116 ---EVAKLLGLEHLLNRKP--------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNL 164
Query: 610 ----TTDMEERFCAKVRAMGTSCITISHRPA 636
M +GT+ I ++H
Sbjct: 165 DAKLRVLMRSEIKKLHERLGTTTIYVTHDQV 195
|
Length = 338 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 1e-12
Identities = 49/185 (26%), Positives = 76/185 (41%), Gaps = 57/185 (30%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520
V+ ++ ++ G L + G +G GKS+L R++ GL SG I
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEI------------------ 70
Query: 521 RPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDL-EYLLDRYPPEKEINWGDEL 579
+ I L+ ++ E + +ELL+ V L E L RYP EL
Sbjct: 71 -------LFEGKDITKLSKEERRERV-----LELLEKVGLPEEFLYRYP--------HEL 110
Query: 580 SLGEQQRLGMARLFYHKPKFAILDECTSAVTT-----------DMEERFCAKVRAMGTSC 628
S G++QR+G+AR PK + DE SA+ D++E G +
Sbjct: 111 SGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEEL-------GLTY 163
Query: 629 ITISH 633
+ ISH
Sbjct: 164 LFISH 168
|
Length = 268 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-12
Identities = 63/228 (27%), Positives = 104/228 (45%), Gaps = 39/228 (17%)
Query: 1100 ISFSKLDIITP-SQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT 1158
+S +L P +K + + ++F + G++L + GP+GSGKS++ R+L G+WP SGS+
Sbjct: 335 LSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVR 394
Query: 1159 KPSQHID--EEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLV 1216
+ + G I Y+PQ GT+ + I +R E K
Sbjct: 395 LDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENI----ARFGEEADPEK--------- 441
Query: 1217 DTTNILDSYLKTILEGVRLS---YLLEREEVGWDANLNWEDI-LSLGEQQRLGMARLFFH 1272
++E RL+ L+ R G+D + LS G++QR+ +AR +
Sbjct: 442 ------------VIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYG 489
Query: 1273 KPKFGILDECTNATSVDVE-EQ-LYRL---AKDMGITFVTSSQRPALI 1315
P +LDE N+ ++D E E L AK G T V + RP+ +
Sbjct: 490 DPFLVVLDE-PNS-NLDSEGEAALAAAILAAKARGGTVVVIAHRPSAL 535
|
Length = 580 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 2e-12
Identities = 53/213 (24%), Positives = 94/213 (44%), Gaps = 37/213 (17%)
Query: 440 SEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS 499
+E V + V++++L ++ G + + GP+G GK++L R++ G S
Sbjct: 1 MPKPALEIRNVSK-SFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS 59
Query: 500 GHIAKPGVGSDLNKEIFYVP--QRPYTAVG------------TLRDQLIYPLTSDQEVEP 545
G I G ++I VP +RP +G T+ + + + L ++++
Sbjct: 60 GEILLDG------EDITDVPPEKRP---IGMVFQSYALFPHMTVEENVAFGLKVRKKLKK 110
Query: 546 LTHGGMV-ELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
V E L+ V LE DR P +LS G+QQR+ +AR +PK +LDE
Sbjct: 111 AEIKARVEEALELVGLEGFADRKP--------HQLSGGQQQRVALARALVPEPKVLLLDE 162
Query: 605 CTSA----VTTDMEERFCAKVRAMGTSCITISH 633
SA + M + R +G + + ++H
Sbjct: 163 PLSALDAKLREQMRKELKELQRELGITFVYVTH 195
|
Length = 352 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 3e-12
Identities = 53/195 (27%), Positives = 77/195 (39%), Gaps = 29/195 (14%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV--------- 507
G V + L + G +I G +GSGKS+ R+L L +G I G
Sbjct: 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVE 64
Query: 508 -GSDLNKEIFYVPQR----PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY 562
K+I V Q+ P+ T+ E +ELLK V LE
Sbjct: 65 LREVRRKKIGMVFQQFALFPHM---TILQNTSLGPELLGWPEQERKEKALELLKLVGLEE 121
Query: 563 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA----VTTDMEERFC 618
RYP DELS G QQR+G+AR +P ++DE SA + M++
Sbjct: 122 YEHRYP--------DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELK 173
Query: 619 AKVRAMGTSCITISH 633
+ + + I+H
Sbjct: 174 KLQATLQKTIVFITH 188
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 3e-12
Identities = 46/177 (25%), Positives = 70/177 (39%), Gaps = 26/177 (14%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG-----VGSDL 511
+L E L+ + G L +TGPNG GK++L R+L GL SG + G +
Sbjct: 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEP 71
Query: 512 NKEIFYVPQRP-----YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 566
++ I Y+ P +A+ L + + V L E L
Sbjct: 72 HRNILYLGHLPGLKPELSALENL--HFWAAIHGGAQRTIEDALAAVGLT---GFEDLPAA 126
Query: 567 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA 623
LS G+Q+RL +ARL+ + ILDE T+A+ +RA
Sbjct: 127 Q-----------LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRA 172
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 3e-12
Identities = 81/274 (29%), Positives = 125/274 (45%), Gaps = 32/274 (11%)
Query: 392 SLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVK 451
S+GTLS L R +G A+R+ EL+ E I+ + + E IEF V
Sbjct: 290 SIGTLSEVWGELQRAAGAAERLIELL--QAEPDIKAPAHPKTLPVPLRGE---IEFEQVN 344
Query: 452 VVTPT-GNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG- 508
P + + L L V PG + + GP+G+GKS+LF++L + SG I GV
Sbjct: 345 FAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDL 404
Query: 509 -----SDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVE-----PLTHGGMVELLK 556
++L + VPQ P ++ + + Y P +D+EVE H + L +
Sbjct: 405 RQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPE 464
Query: 557 NVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 616
D YL +R G LS G++QR+ +AR +LDE TSA+ + E+
Sbjct: 465 GYD-TYLGER---------GVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQL 514
Query: 617 F-CAKVRAM-GTSCITISHRPALVAFHDVVLSLD 648
A M G + + I+HR A V D ++ +D
Sbjct: 515 VQQALETLMKGRTTLIIAHRLATVLKADRIVVMD 548
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 3e-12
Identities = 68/274 (24%), Positives = 118/274 (43%), Gaps = 33/274 (12%)
Query: 386 IISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANY- 444
II+L L +++ RLN E+ ++ E R + N
Sbjct: 431 IINLQPKLQAARVANNRLN----------EVYLVDSEFI-------NKKKRTELNNLNGD 473
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
I + V G+ ++ +++L ++ S I G +GSGKS+L ++L G + SG I
Sbjct: 474 IVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL 533
Query: 505 PGVGSD------LNKEIFYVPQRPYTAVGTLRDQLIY---PLTSDQEVEPLTHGGMVELL 555
G L + I Y+PQ PY G++ + L+ S E+ + E+
Sbjct: 534 NGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACE--IAEIK 591
Query: 556 KNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 615
D+E + Y E G +S G++QR+ +AR K ILDE TS + T E+
Sbjct: 592 D--DIENMPLGYQTELSEE-GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEK 648
Query: 616 RFCAKVRAMG-TSCITISHRPALVAFHDVVLSLD 648
+ + + + I ++HR ++ D ++ LD
Sbjct: 649 KIVNNLLNLQDKTIIFVAHRLSVAKQSDKIIVLD 682
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 5e-12
Identities = 60/204 (29%), Positives = 89/204 (43%), Gaps = 47/204 (23%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 1178
++FE+ PG+ L + GPNG+GKS++ + + GL SGS+ + +++E I YVP
Sbjct: 18 VSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKR---IGYVP 74
Query: 1179 QRPYTCLGTLRDQIIYPLSREE-------AELRALKLHGKGEK-LVDTTNILDSYLKTIL 1230
QR RD +P+S + + K +K VD L
Sbjct: 75 QR----RSIDRD---FPISVRDVVLMGLYGHKGLFRRLSKADKAKVD----------EAL 117
Query: 1231 EGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDV 1290
E V LS L +R + LS G+QQR+ +AR P +LDE VD
Sbjct: 118 ERVGLSELADR-------QI---GELSGGQQQRVLLARALVQDPDLLLLDEPF--AGVDP 165
Query: 1291 --EEQLYRL-----AKDMGITFVT 1307
+E +Y L + M I VT
Sbjct: 166 KTQEDIYELLRELRREGMTILVVT 189
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 5e-12
Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 38/188 (20%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI-- 502
IE + P G+ ++++ L++ G + I GP+G+GKS+L R L GL SG I
Sbjct: 4 IEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILF 63
Query: 503 ----AKPGVGSDLNKE------IFYVP-----QRPYTAVGTLRD------QLIYPLTSDQ 541
G +L K IF V R + ++ L S +
Sbjct: 64 NGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKE 123
Query: 542 EVEPLTHGGMVELLKNVD-LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 600
+ ++ L+ V L+ R LS G+QQR+ +AR +PK
Sbjct: 124 DKA-----QALDALERVGILDKAYQR---------ASTLSGGQQQRVAIARALVQQPKII 169
Query: 601 ILDECTSA 608
+ DE ++
Sbjct: 170 LADEPVAS 177
|
Length = 258 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 7e-12
Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 18/179 (10%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
IE + P G +++++L + PG + + GP+G+GKS+L R L GL SG +
Sbjct: 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60
Query: 505 PGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHG---------GMVEL 554
G D+NK ++ +G + Q + L V E + G + L
Sbjct: 61 DGT--DINKLKGKALRQLRRQIGMIFQQ--FNLIERLSVLENVLSGRLGRRSTWRSLFGL 116
Query: 555 LKNVDLE---YLLDRYP-PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
+ + L+R +K D+LS G+QQR+ +AR +PK + DE +++
Sbjct: 117 FPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASL 175
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 7e-12
Identities = 58/243 (23%), Positives = 105/243 (43%), Gaps = 34/243 (13%)
Query: 408 GYADRIHELMVISRELSIEDKSPQRNGSRNYFSE-ANYIEFSGVKVVTPTGNVLVENLTL 466
G A+ + + + + G + S IE +++++P G L L
Sbjct: 319 GAAESLVTFLE-------TPLAHPQQGEKELASNDPVTIEAEDLEILSPDGKTLAGPLNF 371
Query: 467 KVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLN-----KEIFYVPQ 520
+ G + + GP+G+GK+SL L G P G + G+ +L+ K + +V Q
Sbjct: 372 TLPAGQRIALVGPSGAGKTSLLNALLGFLPY-QGSLKINGIELRELDPESWRKHLSWVGQ 430
Query: 521 RPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYP-----PEKEI 573
P GTLRD ++ P SD++++ + L+N + L P P +
Sbjct: 431 NPQLPHGTLRDNVLLGNPDASDEQLQ--------QALENAWVSEFLPLLPQGLDTPIGDQ 482
Query: 574 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFC-AKVRAM-GTSCITI 631
G LS+G+ QRL +AR + +LDE T+++ E+ A A + + +
Sbjct: 483 AAG--LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMV 540
Query: 632 SHR 634
+H+
Sbjct: 541 THQ 543
|
Length = 588 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 8e-12
Identities = 63/219 (28%), Positives = 91/219 (41%), Gaps = 44/219 (20%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCGIF 1175
++ I PG+ + + G GSGKS++ ++L GL+ GS+ + ID I
Sbjct: 484 VSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRR-NIG 542
Query: 1176 YVPQRPYTCLGTLRDQIIY--PLSREEAELRALKLHGKGEKLVDTTNIL-DSYLKTILEG 1232
YVPQ P GTLRD I P + +E LRA +L G + + D I E
Sbjct: 543 YVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAG----VTEFVRRHPDGLDMQIGER 598
Query: 1233 VRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEE 1292
R LS G++Q + +AR P +LDE T+A EE
Sbjct: 599 GRS--------------------LSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEE 638
Query: 1293 Q----LYRLAKDMGITFVTSSQRPALIPFHSLEL--RLI 1325
+ L R T V + R +L L+L R+I
Sbjct: 639 RFKDRLKRWLAGK--TLVLVTHRTSL-----LDLVDRII 670
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 1e-11
Identities = 38/131 (29%), Positives = 53/131 (40%), Gaps = 20/131 (15%)
Query: 485 SSLFRVLGGLWPLVSG-------HIAKPGVGSDLNKEIFYVPQRPYTAVG-TLRDQLIYP 536
S+L +++ GL SG L K I V Q P T+R+ L +
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 537 LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596
L + E L+ V L LDR P LS G++QR+ +AR K
Sbjct: 61 LRDKEADAR-----AEEALERVGLPDFLDREPV-------GTLSGGQKQRVAIARALLKK 108
Query: 597 PKFAILDECTS 607
PK +LDE T+
Sbjct: 109 PKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 1e-11
Identities = 49/150 (32%), Positives = 80/150 (53%), Gaps = 15/150 (10%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIF 516
++++ L+V GS + + GP+GSGKS+L R++ GL SG I G +++I
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIG 75
Query: 517 YVPQRPYTAVG--TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEIN 574
+V Q Y T+RD + + L + + + ELL+ V LE L DRYP
Sbjct: 76 FVFQH-YALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYP------ 128
Query: 575 WGDELSLGEQQRLGMARLFYHKPKFAILDE 604
++LS G++QR+ +AR +P+ +LDE
Sbjct: 129 --NQLSGGQRQRVALARALAVEPQVLLLDE 156
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 64.8 bits (159), Expect = 2e-11
Identities = 53/207 (25%), Positives = 86/207 (41%), Gaps = 35/207 (16%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCG--I 1174
++ I G+ +L+ GPNGSGKS++ R+L GL SG + + + + + +
Sbjct: 18 DDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKV 77
Query: 1175 FYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVR 1234
V Q P DQ P EE L+ G E+ ++ ++ LE V
Sbjct: 78 GLVFQNP-------DDQFFGPTVEEEVAF-GLENLGLPEEEIEER------VEEALELVG 123
Query: 1235 LSYLLEREEVGWDANLNWEDI--LSLGEQQRLGMARLFFHKPKFGILDECTN----ATSV 1288
L L +R LS G++QR+ +A + P +LDE T A
Sbjct: 124 LEGLRDR------------SPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRR 171
Query: 1289 DVEEQLYRLAKDMGITFVTSSQRPALI 1315
++ E L +L K G T + + L+
Sbjct: 172 ELLELLKKL-KAEGKTIIIVTHDLDLL 197
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 63.6 bits (156), Expect = 2e-11
Identities = 48/201 (23%), Positives = 82/201 (40%), Gaps = 61/201 (30%)
Query: 1112 QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSG 1171
+ + L+ I G+ + + GPNG+GKS++ + L GL SG +
Sbjct: 11 GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL------------- 57
Query: 1172 CGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILE 1231
L + + LS +E A K+ +Y+ LE
Sbjct: 58 ----------------LDGKDLASLSPKE---LARKI---------------AYVPQALE 83
Query: 1232 GVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNA----TS 1287
+ L++L +R + + LS GE+QR+ +AR +P +LDE T+
Sbjct: 84 LLGLAHLADR---------PFNE-LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQ 133
Query: 1288 VDVEEQLYRLAKDMGITFVTS 1308
+++ E L RLA++ G T V
Sbjct: 134 IELLELLRRLARERGKTVVMV 154
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 2e-11
Identities = 65/257 (25%), Positives = 106/257 (41%), Gaps = 52/257 (20%)
Query: 1065 RIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLA-RQLTFEI 1123
RI E+ E +P E++ + + Q S++ + + P Q + L+ +I
Sbjct: 313 RINEITE----QKP---EVTFPTTSTAAAD--QVSLTLNNVSFTYPDQPQPVLKGLSLQI 363
Query: 1124 VPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCGIFYVPQR 1180
G+ + + G G GKS++ ++L W G + +P E A I V QR
Sbjct: 364 KAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQA-ISVVSQR 422
Query: 1181 PYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLE 1240
+ TLRD ++ L+ A D L +L+ V L LLE
Sbjct: 423 VHLFSATLRDNLL--LAAPNAS--------------------DEALIEVLQQVGLEKLLE 460
Query: 1241 REEVGWDANLNWEDI------LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQL 1294
++ G +A W + LS GEQ+RLG+AR H +LDE T + E Q+
Sbjct: 461 DDK-GLNA---W--LGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQI 514
Query: 1295 YRL----AKDMGITFVT 1307
L A++ + +T
Sbjct: 515 LELLAEHAQNKTVLMIT 531
|
Length = 574 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 3e-11
Identities = 45/196 (22%), Positives = 84/196 (42%), Gaps = 27/196 (13%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 1178
++ + G+ + GPNG+GKS++ + + GL SG + + + + I YVP
Sbjct: 23 ISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLR-IGYVP 81
Query: 1179 QRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYL 1238
Q+ R +P++ + ++ L +GK + LE V + L
Sbjct: 82 QK----SSVDRS---FPITVK--DVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDL 132
Query: 1239 LEREEVGWDANLNWEDI--LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYR 1296
+R+ I LS G++QR+ +AR P +LDE V ++++Y
Sbjct: 133 RDRQ------------IGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYD 180
Query: 1297 LAKDM---GITFVTSS 1309
L K++ G T + +
Sbjct: 181 LLKELRQEGKTVLMVT 196
|
Length = 254 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 3e-11
Identities = 55/218 (25%), Positives = 86/218 (39%), Gaps = 53/218 (24%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCGIF 1175
++ EI G+ +L+ GPNGSGKS++ ++L GL SG + + +
Sbjct: 23 VSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVG 82
Query: 1176 YVPQRPYT--CLGTLRDQIIY-----PLSREEAELRALKLHGKGEKLVDTTNILDSYLKT 1228
V Q P T+ D++ + L REE E R
Sbjct: 83 LVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERV---------------------AE 121
Query: 1229 ILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTN---- 1284
LE V L LL+R LS G++QR+ +A + P+ +LDE T
Sbjct: 122 ALELVGLEELLDR----------PPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDP 171
Query: 1285 ATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLEL 1322
++ E L +L ++ G T + + H LEL
Sbjct: 172 KGRRELLELLKKLKEEGGKTIIIVT--------HDLEL 201
|
Length = 235 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 3e-11
Identities = 49/151 (32%), Positives = 75/151 (49%), Gaps = 25/151 (16%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR- 521
+++L+++PG L + GPNG+GKS+L RV+ GL G I + G I YVPQ+
Sbjct: 22 DVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----KLRIGYVPQKL 76
Query: 522 ---PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDE 578
+ R + P T +++ P LK V +L+D P +K
Sbjct: 77 YLDTTLPLTVNRFLRLRPGTKKEDILP--------ALKRVQAGHLID-APMQK------- 120
Query: 579 LSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
LS GE QR+ +AR ++P+ +LDE T V
Sbjct: 121 LSGGETQRVLLARALLNRPQLLVLDEPTQGV 151
|
Length = 251 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 4e-11
Identities = 62/251 (24%), Positives = 100/251 (39%), Gaps = 34/251 (13%)
Query: 1069 LEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKS 1128
+ E+LDAA P + GS+ + ++ L P + ++ ++ PG+
Sbjct: 307 IVEVLDAAGPVAE---GSAPAAGAVGLGKPTLELRDLSAGYPGAPPVLDGVSLDLPPGER 363
Query: 1129 LLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCGIFYVPQRPYTCL 1185
+ + GP+GSGKS++ L GL + G +T P +D++ + Q +
Sbjct: 364 VAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRR-VSVCAQDAHLFD 422
Query: 1186 GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVG 1245
T+R+ + L+R +A D L LE V L+ L G
Sbjct: 423 TTVRENLR--LARPDAT--------------------DEELWAALERVGLADWLRALPDG 460
Query: 1246 WDANLNWED--ILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYR--LAKDM 1301
D L E LS GE+QRL +AR +LDE T + ++L LA
Sbjct: 461 LDTVLG-EGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALS 519
Query: 1302 GITFVTSSQRP 1312
G T V +
Sbjct: 520 GRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 4e-11
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKP 505
E + L +N++L ++ G + + GPNGSGKS+L R + GL SG I
Sbjct: 1 EIENLSFRYGGRTAL-DNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILID 59
Query: 506 GVG------SDLNKEIFYVPQ 520
G +L + I YVPQ
Sbjct: 60 GKDIAKLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 4e-11
Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 25/163 (15%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
G V ++ ++L ++ G + GP+G GK++L R++ G SG I G K+I
Sbjct: 12 GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDG------KDIT 65
Query: 517 YVP--QRPYTAVG---------TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLD 565
+P +RP V T+ + + + L + + + E L V LE +
Sbjct: 66 NLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYAN 125
Query: 566 RYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
R P +LS G+QQR+ +AR ++PK +LDE A
Sbjct: 126 RKP--------SQLSGGQQQRVAIARALVNEPKVLLLDEPLGA 160
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 4e-11
Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKE- 514
++N++L+VE G +I GP GSGKS L + G SG I G ++L E
Sbjct: 11 KEFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEK 70
Query: 515 --IFYVPQR----PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYP 568
I YVPQ P+ T+ + Y L + + ++E+ + + +++LL+R P
Sbjct: 71 RDISYVPQNYALFPHM---TVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP 127
Query: 569 PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 616
+ LS GEQQR+ +AR PK +LDE SA+ +E+
Sbjct: 128 --------ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEK 167
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 5e-11
Identities = 54/190 (28%), Positives = 84/190 (44%), Gaps = 34/190 (17%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKE----IF 516
V+N++ +V PG + GPNG+GK++ FR++ GL G I G L++E I
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITW--NGGPLSQEIKNRIG 75
Query: 517 YVP-QRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVD-------LEYLLDRYP 568
Y+P +R T+ DQL Y LK + L+ L+R
Sbjct: 76 YLPEERGLYPKMTVEDQLKYLAE----------------LKGMPKAEIQKKLQAWLERLE 119
Query: 569 -PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA---VTTDMEERFCAKVRAM 624
K+ ELS G QQ++ H+P+ ILDE S V ++ + +++
Sbjct: 120 IVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEE 179
Query: 625 GTSCITISHR 634
G + I SHR
Sbjct: 180 GATIIFSSHR 189
|
Length = 300 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 6e-11
Identities = 55/214 (25%), Positives = 81/214 (37%), Gaps = 63/214 (29%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCG--- 1173
+ ++ I G+ + + GP+GSGKS++ +L GL SG + +D S
Sbjct: 21 KGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVR-----VDGTDISKLSEKE 75
Query: 1174 --------IFYVPQRPYTCLGTL--RDQIIYPL-----SREEAELRALKLHGKGEKLVDT 1218
I +V Q + L L + + PL ++E RA +L
Sbjct: 76 LAAFRRRHIGFVFQS-FNLLPDLTALENVELPLLLAGVPKKERRERAEEL---------- 124
Query: 1219 TNILDSYLKTILEGVRLSYLLER--EEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKF 1276
LE V L L E LS G+QQR+ +AR + PK
Sbjct: 125 -----------LERVGLGDRLNHYPSE------------LSGGQQQRVAIARALANDPKI 161
Query: 1277 GILDECTNA----TSVDVEEQLYRLAKDMGITFV 1306
+ DE T T +V E L L K+ G T V
Sbjct: 162 ILADEPTGNLDSETGKEVMELLRELNKEAGTTIV 195
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 6e-11
Identities = 50/167 (29%), Positives = 73/167 (43%), Gaps = 33/167 (19%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
G ++ NL L + G L + GP+G GK+++ R++ G SG I G D+
Sbjct: 26 GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQ--DITH--- 80
Query: 517 YVP--QRPYTAV---------GTLRDQLIYPL----TSDQEVEPLTHGGMVELLKNVDLE 561
VP R V T+ + + + L T E+ P E L+ V LE
Sbjct: 81 -VPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVM----EALRMVQLE 135
Query: 562 YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
R P +LS G+QQR+ +AR +KPK +LDE SA
Sbjct: 136 EFAQRKP--------HQLSGGQQQRVAIARAVVNKPKVLLLDESLSA 174
|
Length = 375 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 6e-11
Identities = 59/194 (30%), Positives = 85/194 (43%), Gaps = 44/194 (22%)
Query: 445 IEFSGV-KVVTPTGN--VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
IE V KV TG +++++L V G I G +G+GKS+L R + GL SG
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 502 IAKPGV------GSDL---NKEIFYVPQ-------RPYTAVGTLRDQLIYPL----TSDQ 541
+ G G +L + I + Q R T+ + + PL
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSR------TVFENVALPLEIAGVPKA 115
Query: 542 EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601
E+E ELL+ V LE D YP +LS G++QR+G+AR + PK +
Sbjct: 116 EIEERVL----ELLELVGLEDKADAYP--------AQLSGGQKQRVGIARALANNPKVLL 163
Query: 602 LDECTSAV---TTD 612
DE TSA+ TT
Sbjct: 164 CDEATSALDPETTQ 177
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 7e-11
Identities = 53/160 (33%), Positives = 74/160 (46%), Gaps = 19/160 (11%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEI 515
++ N++ + G LITGP+G GKS+L +++ L SG + G S L EI
Sbjct: 19 DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEI 78
Query: 516 F-----YVPQRPYTAVGTLRDQLIYP-LTSDQEVEPLTHGGMVELLKNVDLEYL-LDRYP 568
+ Y Q P T+ D LI+P +Q+ +P L DLE L
Sbjct: 79 YRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDP------AIFLD--DLERFALPDTI 130
Query: 569 PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
K I ELS GE+QR+ + R PK +LDE TSA
Sbjct: 131 LTKNIA---ELSGGEKQRISLIRNLQFMPKVLLLDEITSA 167
|
Length = 225 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 8e-11
Identities = 64/229 (27%), Positives = 101/229 (44%), Gaps = 38/229 (16%)
Query: 1099 SISFSKLDIITPSQKLLARQL---TFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSG 1155
+S L I+ K L + EI G++L + G +GSGKS++ R+L GL SG
Sbjct: 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG 62
Query: 1156 SLTKPSQHIDEEAGSG---CGIFYVPQRPYTCLGTLR--DQIIYPLSREEAELRALKLHG 1210
S+ + + + + + V Q PY+ L R +I+ L+ HG
Sbjct: 63 SILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILS---------EPLRPHG 113
Query: 1211 KGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLF 1270
+ +LD G+ S+ L+R LS G++QR+ +AR
Sbjct: 114 LSKSQQRIAELLDQV------GLPPSF-LDR----------RPHELSGGQRQRIAIARAL 156
Query: 1271 FHKPKFGILDECTNATSVDVEEQ----LYRLAKDMGITFVTSSQRPALI 1315
+PK ILDE T+A V V+ Q L L K+ G+T++ S AL+
Sbjct: 157 IPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALV 205
|
Length = 252 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 1e-10
Identities = 68/236 (28%), Positives = 110/236 (46%), Gaps = 40/236 (16%)
Query: 1098 DSISFSKLDIITPSQKLLA-RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS 1156
++SFS P+Q++ A ++ I G+ + + G GSGKS++ ++L GL+ SGS
Sbjct: 6 RNVSFS-----YPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 1157 L---TKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQII--YPLSREEAELRALKLHGK 1211
+ + +D I YVPQ GTLRD I PL+ +E LRA +L G
Sbjct: 61 VLLDGTDIRQLDPADLRR-NIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAG- 118
Query: 1212 GEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFF 1271
+ ++ G L+ E G LS G++Q + +AR
Sbjct: 119 ----------VTDFVNKHPNG----LDLQIGERG--------RGLSGGQRQAVALARALL 156
Query: 1272 HKPKFGILDECTNATSVDVEEQLY-RLAKDM-GITFVTSSQRPALIPFHSLELRLI 1325
+ P +LDE T+A ++ EE+L RL + + T + + RP+L+ L R+I
Sbjct: 157 NDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL---DLVDRII 209
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 1e-10
Identities = 51/182 (28%), Positives = 78/182 (42%), Gaps = 34/182 (18%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
IEF V V+++ L +E G L++ GP+GSGK++ +++ L SG I
Sbjct: 2 IEFENV-SKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILI 60
Query: 505 PGV------GSDLNKEIFYVPQR----PYTAVG---TLRDQL--IYPLTSDQEVEPLTHG 549
G +L ++I YV Q+ P+ V +L + +
Sbjct: 61 DGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRAD----- 115
Query: 550 GMVELLKNVDLE--YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
ELL V L+ DRYP ELS G+QQR+G+AR P ++DE
Sbjct: 116 ---ELLDLVGLDPSEYADRYP--------HELSGGQQQRVGVARALAADPPILLMDEPFG 164
Query: 608 AV 609
A+
Sbjct: 165 AL 166
|
Length = 309 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 1e-10
Identities = 53/206 (25%), Positives = 84/206 (40%), Gaps = 40/206 (19%)
Query: 452 VVTPTGNVL-VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSD 510
++ TG + V +++L V G +I G +GSGKS+L R + L SG + G D
Sbjct: 30 ILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQ--D 87
Query: 511 LN------------KEIFYV-------PQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGM 551
+ K+I V P R T+ + + + L
Sbjct: 88 IAAMSRKELRELRRKKISMVFQSFALLPHR------TVLENVAFGLEVQGVPRAEREERA 141
Query: 552 VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA--- 608
E L+ V LE +YP DELS G QQR+G+AR P ++DE SA
Sbjct: 142 AEALELVGLEGWEHKYP--------DELSGGMQQRVGLARALAVDPDILLMDEAFSALDP 193
Query: 609 -VTTDMEERFCAKVRAMGTSCITISH 633
+ +M++ + + + I+H
Sbjct: 194 LIRREMQDELLRLQAELQKTIVFITH 219
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 1e-10
Identities = 52/178 (29%), Positives = 79/178 (44%), Gaps = 25/178 (14%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
IEF V G V NL L++ G L++ GP+GSGK++ +++ L SG I
Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60
Query: 505 PGV------GSDLNKEIFYVPQRPYTAVG-----TLRDQLIYPLTSDQEVEPLTHGGMVE 553
G +L ++I YV Q+ +G T+ + + + + E
Sbjct: 61 DGEDIREQDPVELRRKIGYVIQQ----IGLFPHMTVEENIALVPKLLKWPKEKIRERADE 116
Query: 554 LLKNVDLE--YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
LL V L+ DRYP ELS G+QQR+G+AR P ++DE A+
Sbjct: 117 LLALVGLDPAEFADRYP--------HELSGGQQQRVGVARALAADPPLLLMDEPFGAL 166
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 1e-10
Identities = 50/170 (29%), Positives = 73/170 (42%), Gaps = 34/170 (20%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNK-EI 515
+++ + L V+ G ++I GP+GSGKS+L R + L SG I G+ +K I
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI 71
Query: 516 FYVPQRPYTAVG------------TLRDQLIYPLT-----SDQEVEPLTHGGMVELLKNV 558
+ Q+ VG T+ + + S E E ELL+ V
Sbjct: 72 NELRQK----VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERAL----ELLEKV 123
Query: 559 DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
L D YP +LS G+QQR+ +AR PK + DE TSA
Sbjct: 124 GLADKADAYP--------AQLSGGQQQRVAIARALAMNPKVMLFDEPTSA 165
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 1e-10
Identities = 51/163 (31%), Positives = 71/163 (43%), Gaps = 33/163 (20%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP 522
++L VE G ++I GP+GSGKS+L R L GL SG I G K+I + ++
Sbjct: 20 GISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK- 78
Query: 523 YTAVG------------TLRDQLIYPLT-----SDQEVEPLTHGGMVELLKNVDLEYLLD 565
VG T+ + + S E + ELL+ V L D
Sbjct: 79 ---VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREK---AL-ELLEKVGLADKAD 131
Query: 566 RYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
YP +LS G+QQR+ +AR PK + DE TSA
Sbjct: 132 AYP--------AQLSGGQQQRVAIARALAMDPKVMLFDEPTSA 166
|
Length = 240 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-10
Identities = 39/149 (26%), Positives = 61/149 (40%), Gaps = 34/149 (22%)
Query: 1140 SSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCGIFYVPQRPYTCLG-TLRDQIIYP 1195
S++ +++ GL SG++ + + I V Q P T+R+ + +
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 1196 LSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 1255
L +EA+ RA + LE V L L+RE VG
Sbjct: 61 LRDKEADARAEE---------------------ALERVGLPDFLDREPVG---------T 90
Query: 1256 LSLGEQQRLGMARLFFHKPKFGILDECTN 1284
LS G++QR+ +AR KPK +LDE T
Sbjct: 91 LSGGQKQRVAIARALLKKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 2e-10
Identities = 66/263 (25%), Positives = 112/263 (42%), Gaps = 23/263 (8%)
Query: 402 RLNRLSGYADRIHELMVISREL-SIEDKSPQRNGSRNYFSEANY---IEFSGVKVVTPTG 457
RL+++SG+ +I E + +ED QR + N +EF +
Sbjct: 288 RLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANS 347
Query: 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDL 511
+ V +++ + + G + I GP G+GK++L +L ++ G I G+ L
Sbjct: 348 SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESL 407
Query: 512 NKEIFYVPQRPYTAVGTLRDQLIYPLT--SDQEVEPLTHGGMVELLKNVDLEYLLDRYPP 569
K I V Q ++R+ + +D+EV +++L R
Sbjct: 408 RKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAH-------DFILKRSNG 460
Query: 570 EKEI--NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTS 627
+ G+ LS GE+QRL +AR +LDE TSA+ + E R + A+ +
Sbjct: 461 YDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKN 520
Query: 628 CIT--ISHRPALVAFHDVVLSLD 648
T I+HR + V D+VL LD
Sbjct: 521 RTTFIIAHRLSTVRNADLVLFLD 543
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-10
Identities = 50/197 (25%), Positives = 81/197 (41%), Gaps = 36/197 (18%)
Query: 1118 QLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYV 1177
++ + G+ GPNG+GK++ +++ GL SG +T + +
Sbjct: 18 DISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIE-------- 69
Query: 1178 PQRPYTCLGTLRD-QIIYP-LSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRL 1235
+G L + YP L+ E +L G +K +D +L+ V L
Sbjct: 70 ---ALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDE----------VLDVVGL 116
Query: 1236 SYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVD-VEE-- 1292
+++V SLG +QRLG+A P ILDE TN D ++E
Sbjct: 117 KDS-AKKKVK---------GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELR 166
Query: 1293 QLYRLAKDMGITFVTSS 1309
+L +D GIT + SS
Sbjct: 167 ELILSLRDQGITVLISS 183
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 3e-10
Identities = 50/188 (26%), Positives = 80/188 (42%), Gaps = 31/188 (16%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCGIF 1175
++F + PG+ + GP+GSGKS+V +L + G + KP + + +
Sbjct: 33 VSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS-KVS 91
Query: 1176 YVPQRPYTCLGTLRDQIIYPL---SREEAELRALKLHGKGEKLVDTTNILDSYLKTILEG 1232
V Q P +L+D I Y L S E + A K H S++ + G
Sbjct: 92 LVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHA------------HSFISELASG 139
Query: 1233 VRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEE 1292
EVG + LS G++QR+ +AR P+ ILDE T+A + E+
Sbjct: 140 Y-------DTEVGEKGSQ-----LSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQ 187
Query: 1293 QLYRLAKD 1300
Q+ + D
Sbjct: 188 QVQQALYD 195
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 3e-10
Identities = 92/374 (24%), Positives = 151/374 (40%), Gaps = 81/374 (21%)
Query: 969 SRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHN-----VTW-GLSLLYAMEHKGDRALV 1022
SRF+E LE +L L K+K L T + V + G L+ + LV
Sbjct: 364 SRFKEALEETLQLNKRKALAYAGY-LWTTSVLGMLIQVLVLYYGGQLVLTGKVSSG-NLV 421
Query: 1023 S---TQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPG 1079
S Q +L A+R L+ V + +++ G ++FE LD +
Sbjct: 422 SFLLYQEQLGEAVRVLSYV-------YSGMMQA-------VGASEKVFEY---LD--RKP 462
Query: 1080 DDEISGSSQHKW--NSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGS 1137
+ ++G+ ++QD +SFS P +L + LTF + PG+ + + GP+GS
Sbjct: 463 NIPLTGTLAPLNLEGLIEFQD-VSFSY--PNRPDVPVL-KGLTFTLHPGEVVALVGPSGS 518
Query: 1138 GKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY-------VPQRPYTCLGTLRD 1190
GKS+V +L+ L+ G + +D Y V Q P G++R+
Sbjct: 519 GKSTVAALLQNLYQPTGGQVL-----LDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRE 573
Query: 1191 QIIYPLSR-EEAELRAL-KLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDA 1248
I Y L+ + E+ A K + +++ N D+ EVG
Sbjct: 574 NIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDT------------------EVGEKG 615
Query: 1249 NLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTS 1308
+ LS G++QR+ +AR KP+ ILDE T+A + E+ L
Sbjct: 616 SQ-----LSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRS--------R 662
Query: 1309 SQRPALIPFHSLEL 1322
+ R L+ H L
Sbjct: 663 ASRTVLLIAHRLST 676
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 3e-10
Identities = 51/181 (28%), Positives = 75/181 (41%), Gaps = 38/181 (20%)
Query: 1115 LARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGI 1174
L L+F + G++L VTGPNG GK+++ R+L GL SG + + E+
Sbjct: 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDE---- 70
Query: 1175 FYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVR 1234
P R LG + LS E LH + I G +
Sbjct: 71 ---PHRNILYLGH-LPGLKPELSALE------NLH---------------FWAAIHGGAQ 105
Query: 1235 LSYLLEREEVGWDANLNWEDI----LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDV 1290
+ VG +ED+ LS G+Q+RL +ARL+ + ILDE T T++D
Sbjct: 106 RTIEDALAAVGLTG---FEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPT--TALDK 160
Query: 1291 E 1291
Sbjct: 161 A 161
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 3e-10
Identities = 56/204 (27%), Positives = 82/204 (40%), Gaps = 37/204 (18%)
Query: 455 PTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSD---- 510
P G +++ L E G L + G NG+GKS+L L GL SG + G D
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 511 ----LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE--PLTHGG--------MVELLK 556
+ + V Q P DQL DQ+V PL G + E L
Sbjct: 62 GLLERRQRVGLVFQDP-------DDQLFAA-DVDQDVAFGPLNLGLSEAEVERRVREALT 113
Query: 557 NVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 616
V L +R P LS GE++R+ +A +P +LDE T+ + E+
Sbjct: 114 AVGASGLRER-PTH-------CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQ 165
Query: 617 FCA---KVRAMGTSCITISHRPAL 637
A ++RA G + + +H L
Sbjct: 166 MLAILRRLRAEGMTVVISTHDVDL 189
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 3e-10
Identities = 57/208 (27%), Positives = 90/208 (43%), Gaps = 44/208 (21%)
Query: 452 VVTPTGNVL-VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S 509
++ TG V+ V + +L VE G +I G +GSGKS+L R+L L G I G +
Sbjct: 34 ILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIA 93
Query: 510 DLNKE------------IF----YVPQRPYTAVGTLRDQLIYPL----TSDQEVEPLTHG 549
L+ +F +P R T+ + + + L E E
Sbjct: 94 KLSAAELRELRRKKISMVFQSFALLPHR------TVLENVAFGLEVQGVPKAEREERAL- 146
Query: 550 GMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA- 608
E L+ V LE D+YP +ELS G QQR+G+AR + P ++DE SA
Sbjct: 147 ---EALELVGLEGYADKYP--------NELSGGMQQRVGLARALANDPDILLMDEAFSAL 195
Query: 609 ---VTTDMEERFCAKVRAMGTSCITISH 633
+ T+M++ + + + I+H
Sbjct: 196 DPLIRTEMQDELLELQAKLKKTIVFITH 223
|
Length = 386 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 4e-10
Identities = 60/211 (28%), Positives = 93/211 (44%), Gaps = 53/211 (25%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS-------LTKPSQHIDEEAGSG 1171
++F I G++L + G +GSGKS++ R + GL SGS L K S+ + +
Sbjct: 24 VSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKE 83
Query: 1172 CGIFYVPQRPYTCLG---TLRDQIIYPL------SREEAELRALKLHGKGEKLVDTTNIL 1222
I V Q P + L T+ +QI PL S++EA A+ L + +L
Sbjct: 84 --IQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLL--LLVGVGLPEEVL 139
Query: 1223 DSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDEC 1282
+ Y E LS G++QR+ +AR PK I DE
Sbjct: 140 NRY--------------PHE-------------LSGGQRQRVAIARALALNPKLLIADEP 172
Query: 1283 TNATSVDVEEQ----LYRLAKDMGIT--FVT 1307
T+A V V+ Q L +L +++G+T F+T
Sbjct: 173 TSALDVSVQAQILDLLKKLQEELGLTLLFIT 203
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 4e-10
Identities = 48/179 (26%), Positives = 72/179 (40%), Gaps = 50/179 (27%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
+EF V G +L+++L+ +++ G + I GPNG+GKS+L ++L G +SG + K
Sbjct: 322 LEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV-K 380
Query: 505 PGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLL 564
G +I Y Q RD+L K V LE L
Sbjct: 381 VGE----TVKIGYFDQH--------RDELD-------------------PDKTV-LEELS 408
Query: 565 DRYPPEKEINWGD-----------------ELSLGEQQRLGMARLFYHKPKFAILDECT 606
+ +P E LS GE+ RL +A+L P +LDE T
Sbjct: 409 EGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPT 467
|
Length = 530 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 5e-10
Identities = 62/208 (29%), Positives = 93/208 (44%), Gaps = 49/208 (23%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDL--------- 511
V+ +TL++ G L + G +G GKS+ R + GL G +A +G DL
Sbjct: 37 VDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVA--WLGKDLLGMKDDEWR 94
Query: 512 --NKEIFYVPQRPYTAVG---TLRD------QLIYPLTSDQEVEPLTHGGM--VELLKNV 558
+I + Q P ++ T+ + + +P S QEV+ M V LL N
Sbjct: 95 AVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPN- 153
Query: 559 DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFC 618
L++RYP E S G+ QR+G+AR +PK I DE SA+ ++
Sbjct: 154 ----LINRYP--------HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQ---- 197
Query: 619 AKV--------RAMGTSCITISHRPALV 638
A+V R MG S I I+H A+V
Sbjct: 198 AQVVNLLQQLQREMGLSLIFIAHDLAVV 225
|
Length = 331 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 5e-10
Identities = 56/202 (27%), Positives = 100/202 (49%), Gaps = 14/202 (6%)
Query: 455 PTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLN- 512
P G +++++++L++EPG + I GP+GSGKS+L R+L G SG + G + L+
Sbjct: 463 PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDV 522
Query: 513 ----KEIFYVPQRPYTAVGTLRDQLI--YPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 566
+++ V Q G++ + + PLT D+ E G+ E ++ + + +
Sbjct: 523 QAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMG--MHT 580
Query: 567 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGT 626
E G LS G++QRL +AR KP+ + DE TSA+ + + +
Sbjct: 581 VISEG----GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKV 636
Query: 627 SCITISHRPALVAFHDVVLSLD 648
+ I I+HR + + D + LD
Sbjct: 637 TRIVIAHRLSTIRNADRIYVLD 658
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 5e-10
Identities = 66/238 (27%), Positives = 105/238 (44%), Gaps = 41/238 (17%)
Query: 430 PQRNGSRNYFSEANYIEFSGVKV-VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLF 488
P+ G+ I F ++ P ++ NL L ++PG + I GP+GSGKS+L
Sbjct: 450 PELRGA---------ITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLT 500
Query: 489 RVLGGLWP------LVSGH---IAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQ--LIYPL 537
++L L+ LV G IA P + L +++ V Q ++RD L P
Sbjct: 501 KLLQRLYTPQHGQVLVDGVDLAIADP---AWLRRQMGVVLQENVLFSRSIRDNIALCNPG 557
Query: 538 TSDQEVEPLT-----HGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592
+ V H + EL + + E EK G LS G++QR+ +AR
Sbjct: 558 APFEHVIHAAKLAGAHDFISELPQGYNTEVG------EK----GANLSGGQRQRIAIARA 607
Query: 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLD 648
P+ I DE TSA+ + E +R + G + I I+HR + V D ++ L+
Sbjct: 608 LVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLE 665
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (148), Expect = 6e-10
Identities = 59/203 (29%), Positives = 96/203 (47%), Gaps = 34/203 (16%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG----VGSD----- 510
+++++T+K+ S I GP+GSGKS+L +VL L + I G G D
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 511 ---LNKEIFYVPQRPYTAVG-TLRDQLIYPLTS-----DQEVEPLTHGGMVELLKNVDL- 560
L KE+ V Q+P ++ D + YPL S +E++ + + E L+ V L
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKI----VEECLRKVGLW 140
Query: 561 EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV----TTDMEER 616
+ + DR +LS G+QQRL +AR KPK ++DE TS + + +E+
Sbjct: 141 KEVYDRLNSP-----ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKL 195
Query: 617 FCAKVRAMGTSCITISHRPALVA 639
+ + + +SH P VA
Sbjct: 196 ITELKNEI--AIVIVSHNPQQVA 216
|
Length = 257 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 8e-10
Identities = 59/218 (27%), Positives = 88/218 (40%), Gaps = 52/218 (23%)
Query: 1121 FEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP----VVSGSLTKPSQHI----DEEAGSGC 1172
FE+ PG+ L + G +GSGKS++ L GL P + SG + + + + E
Sbjct: 30 FEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLR 89
Query: 1173 G--IFYVPQRPYTCLG---TLRDQII------YPLSREEAELRALKLHGKGEKLVDTTNI 1221
G I + Q P T L T+ DQI SR EA RA++L
Sbjct: 90 GKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVEL------------- 136
Query: 1222 LDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDE 1281
LE V L + E + LS G +QR+ +A KPK I DE
Sbjct: 137 --------LEQVGLP---DPERRDRYPH-----QLSGGMRQRVMIAMALALKPKLLIADE 180
Query: 1282 CTNATSVDVEEQ----LYRLAKDMGITFVTSSQRPALI 1315
T A V + Q L L +++G+ + + ++
Sbjct: 181 PTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVV 218
|
Length = 539 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 8e-10
Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 23/158 (14%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNK--- 513
+++L L + G +++ GP+G GK++ R++ GL SG I G D+
Sbjct: 12 NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGR--DVTDLPP 69
Query: 514 ---EIFYVPQR----PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 566
+I V Q P+ V D + + L + + + E+ + + +E+LLDR
Sbjct: 70 KDRDIAMVFQNYALYPHMTV---YDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDR 126
Query: 567 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
P +LS G++QR+ + R +PK ++DE
Sbjct: 127 KP--------KQLSGGQRQRVALGRAIVREPKVFLMDE 156
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 60.5 bits (148), Expect = 8e-10
Identities = 53/220 (24%), Positives = 86/220 (39%), Gaps = 51/220 (23%)
Query: 447 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH----- 501
F G+ + +++ V PG + GPNG+GK++LF ++ G SG
Sbjct: 10 FGGLVALD--------DVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDG 61
Query: 502 ----------IAKPGVG-SDLNKEIF---------YVPQRPYTAVGTLRDQLIYPLTSDQ 541
IA+ G+G + +F V + T G L + ++
Sbjct: 62 EDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLAR---ARREER 118
Query: 542 EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601
E ELL+ V L L DR ELS G+Q+RL +AR PK +
Sbjct: 119 EARERAE----ELLERVGLADLADRPA--------GELSYGQQRRLEIARALATDPKLLL 166
Query: 602 LDECTSAVTTDMEERFCA---KVRAMGTSCITISHRPALV 638
LDE + + + E ++R G + + + H +V
Sbjct: 167 LDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVV 206
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 8e-10
Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 22/181 (12%)
Query: 427 DKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSS 486
+K+ Q N R + S+ N + FS + +V G +++N+ LK+E G L ITG GSGK+S
Sbjct: 22 EKAKQENNDRKHSSDDNNLFFSNLCLV---GAPVLKNINLKIEKGEMLAITGSTGSGKTS 78
Query: 487 LFR-VLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEP 545
L +LG L P G I G I + Q + GT+++ +I+ ++ D+
Sbjct: 79 LLMLILGELEP-SEGKIKHSG-------RISFSSQFSWIMPGTIKENIIFGVSYDEY--- 127
Query: 546 LTHGGMVELLKNVDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAIL 602
++K LE + ++P + G+ LS G++ R+ +AR Y +L
Sbjct: 128 ----RYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLL 183
Query: 603 D 603
D
Sbjct: 184 D 184
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 8e-10
Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 16/185 (8%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG--HIAKPGVGSDLNKEIFYV 518
+++++ VE G + GPNG+GK++ R++ G+ SG + I Y+
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYL 75
Query: 519 PQ-RPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYP-PEKEINWG 576
P+ R + DQL+Y L + ++ E + +D L+R E
Sbjct: 76 PEERGLYPKMKVIDQLVY-LAQLKGLKK------EEARRRID--EWLERLELSEYANKRV 126
Query: 577 DELSLGEQQRLGMARLFYHKPKFAILDECTSA---VTTDMEERFCAKVRAMGTSCITISH 633
+ELS G QQ++ H P+ ILDE S V ++ + ++ G + I +H
Sbjct: 127 EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTH 186
Query: 634 RPALV 638
+ LV
Sbjct: 187 QMELV 191
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 9e-10
Identities = 58/200 (29%), Positives = 88/200 (44%), Gaps = 46/200 (23%)
Query: 1110 PSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDE--- 1166
P + +L + ++F I GK + + GP+GSGKS++ R+L + V SGS+ Q I E
Sbjct: 12 PGRPVL-KDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTL 70
Query: 1167 ----EAGSGCGIFYVPQRPYTCL--GTLRDQIIY--PLSREEAELRALKLHGKGEKLVDT 1218
A I VPQ T L T+ I Y P + +E + A K +K++
Sbjct: 71 DSLRRA-----IGVVPQD--TVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIM-- 121
Query: 1219 TNILDSYLKTIL--EGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKF 1276
D Y TI+ G++LS G GE+QR+ +AR P
Sbjct: 122 -RFPDGY-DTIVGERGLKLS--------G-------------GEKQRVAIARAILKNPPI 158
Query: 1277 GILDECTNATSVDVEEQLYR 1296
+LDE T+A E ++
Sbjct: 159 LLLDEATSALDTHTEREIQA 178
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 9e-10
Identities = 57/221 (25%), Positives = 88/221 (39%), Gaps = 33/221 (14%)
Query: 1112 QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSG 1171
++ L L+F + G++L +TGPNG+GK+++ R+L GL +G + + I S
Sbjct: 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRES- 72
Query: 1172 CGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRAL-KLHGKGEKLVDTTNILDSYLKTIL 1230
+ LG + I L+ E L + HG G + + L
Sbjct: 73 ------YHQALLYLGH-QPGIKTELTALE-NLHFWQRFHGSGN---------AATIWEAL 115
Query: 1231 EGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDV 1290
V L+ LE VG LS G+Q+R+ +ARL+ ILDE A +
Sbjct: 116 AQVGLAG-LEDLPVGQ---------LSAGQQRRVALARLWLSPAPLWILDEPFTALDKEG 165
Query: 1291 EEQLYRL----AKDMGITFVTSSQRPALIPFHSLELRLIDG 1327
L L A GI +T+ Q + L L
Sbjct: 166 VALLTALMAAHAAQGGIVLLTTHQPLPIASAQIRRLDLTAT 206
|
Length = 209 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 1e-09
Identities = 55/209 (26%), Positives = 83/209 (39%), Gaps = 37/209 (17%)
Query: 1112 QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDE-E 1167
K + L+F I G+ + GPNGSGKS++ + L GL SG + K + E
Sbjct: 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKE 73
Query: 1168 AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLV---DTTNILDS 1224
YVPQ P + L+ E L H D + ++
Sbjct: 74 LAKKLA--YVPQSP---------SAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEA 122
Query: 1225 YLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTN 1284
LE + L +L +R D LS GE+QR+ +AR + +LDE T+
Sbjct: 123 -----LELLGLEHLADR---PVDE-------LSGGERQRVLIARALAQETPILLLDEPTS 167
Query: 1285 A----TSVDVEEQLYRLAKDMGITFVTSS 1309
++V E L L ++ G+T V
Sbjct: 168 HLDIAHQIEVLELLRDLNREKGLTVVMVL 196
|
Length = 258 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 1e-09
Identities = 64/237 (27%), Positives = 97/237 (40%), Gaps = 44/237 (18%)
Query: 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTK 1159
I L P+ K + ++ I PG+ + + GP+G+GKS++ R L GL SGS+
Sbjct: 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL- 59
Query: 1160 PSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQI--I---YPLSREEAELRALK--LHGKG 1212
ID + + L LR QI I + L L L+ L G+
Sbjct: 60 ----IDGTD--------INKLKGKALRQLRRQIGMIFQQFNLI---ERLSVLENVLSGR- 103
Query: 1213 EKLVDTTNILDSYLK--TILEGVRLSYLLEREEVGWDANLNWE-DILSLGEQQRLGMARL 1269
+ + S E R LER VG D LS G+QQR+ +AR
Sbjct: 104 ---LGRRSTWRSLFGLFPKEEKQRALAALER--VGLLDKAYQRADQLSGGQQQRVAIARA 158
Query: 1270 FFHKPKFGILDECTN----ATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLEL 1322
+PK + DE A+S V + L R+ ++ GIT ++ H ++L
Sbjct: 159 LMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGIT--------VIVSLHQVDL 207
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 46/180 (25%), Positives = 71/180 (39%), Gaps = 31/180 (17%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
L +L+ + G L ITGPNG+GK++L R+L GL +G + G +E +
Sbjct: 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESY 73
Query: 517 -----YVPQRP-----YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLD- 565
Y+ +P TA+ L + + E L V L L D
Sbjct: 74 HQALLYLGHQPGIKTELTALENLH---FWQRFHGSGNAA----TIWEALAQVGLAGLEDL 126
Query: 566 --RYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA 623
LS G+Q+R+ +ARL+ ILDE +A+ + A + A
Sbjct: 127 PVGQ-----------LSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAA 175
|
Length = 209 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 1e-09
Identities = 60/181 (33%), Positives = 80/181 (44%), Gaps = 33/181 (18%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG---- 500
IEF V VL N+ L ++ G ++I GP+GSGKS+L R + L + SG
Sbjct: 2 IEFKNVSKHFGPTQVL-HNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIV 60
Query: 501 ---HIAKPGVG-SDLNKEIFYVPQRPY-----TAVGTLRDQLIYPL----TSDQEVEPLT 547
+ P V + +E V Q+ Y TA L + + PL S +E E
Sbjct: 61 DGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTA---LENVMFGPLRVRGASKEEAEKQA 117
Query: 548 HGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
ELL V L YP ELS G+QQR+ +AR KPK + DE TS
Sbjct: 118 R----ELLAKVGLAERAHHYP--------SELSGGQQQRVAIARALAVKPKLMLFDEPTS 165
Query: 608 A 608
A
Sbjct: 166 A 166
|
Length = 240 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 1e-09
Identities = 53/216 (24%), Positives = 86/216 (39%), Gaps = 57/216 (26%)
Query: 447 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG 506
F GVK + ++L V PG + G NG+GKS+L ++L G++P SG
Sbjct: 18 FGGVKALD--------GVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSG------ 63
Query: 507 VGSDLNKEIFY--VPQRPYTAVGTLRD--QLIYPLTSDQEV----------------EPL 546
EI P + L ++ QE+ EP
Sbjct: 64 -------EILIDGKPVAFSSPRDALAAGIATVH-----QELSLVPNLSVAENIFLGREPT 111
Query: 547 THGGMVELLK-NVDLEYLLDRY----PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601
G+++ LL R P+ + +LS+ ++Q + +AR + I
Sbjct: 112 RRFGLIDRKAMRRRARELLARLGLDIDPDTLVG---DLSIAQRQMVEIARALSFDARVLI 168
Query: 602 LDECTSAVT---TDMEERFCAKVRAMGTSCITISHR 634
LDE T+A+T T+ +++A G + I ISHR
Sbjct: 169 LDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHR 204
|
Length = 500 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 1e-09
Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 30/186 (16%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDL-----NKEIFY 517
++TL G L++ GP+G+GKSSL RVL L SG + G D +K I
Sbjct: 20 DITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAI-- 77
Query: 518 VPQRPYTAVGTLRDQL-IYPLTSDQE--VE-PLTHGGM---------VELLKNVDLEYLL 564
+ VG + Q ++P + QE +E P G+ +LLK + L+
Sbjct: 78 --RDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYA 135
Query: 565 DRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM 624
DRYP LS G+QQR+ +AR +P+ + DE T+A+ ++ + + ++ +
Sbjct: 136 DRYPL--------HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKEL 187
Query: 625 GTSCIT 630
+ IT
Sbjct: 188 AETGIT 193
|
Length = 242 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 2e-09
Identities = 45/185 (24%), Positives = 82/185 (44%), Gaps = 23/185 (12%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520
V +++ + E G + G NG+GK++L R++ L SG + GV D ++ +V +
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGV--DTVRDPSFVRR 75
Query: 521 RPYTAVGTLRDQ--LIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGD- 577
+ +G L + L LT+ E L + + L +++ + K + +
Sbjct: 76 K----IGVLFGERGLYARLTAR---ENLKYFARLNGLSRKEIKARIAEL--SKRLQLLEY 126
Query: 578 ------ELSLGEQQRLGMARLFYHKPKFAILDECTSAV---TTDMEERFCAKVRAMGTSC 628
E S G +Q++ +AR H P +LDE TS + T F +++ G +
Sbjct: 127 LDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAV 186
Query: 629 ITISH 633
I SH
Sbjct: 187 IFSSH 191
|
Length = 245 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 2e-09
Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 37/166 (22%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP 522
++ L++ PG +++TGP+GSGK++L ++GGL + G + L +E++ ++
Sbjct: 23 DINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSL------KVLGQELYGASEKE 76
Query: 523 YTAVGTLRDQLIY---------PLTSDQEV-------EPLTHGGMVEL----LKNVDLEY 562
+ R + Y LT+ Q V L++ E L+ V L
Sbjct: 77 LVQL---RRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGD 133
Query: 563 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
LD YP LS G++QR+ +AR H+PK + DE T+A
Sbjct: 134 HLDYYP--------HNLSGGQKQRVAIARALVHRPKLVLADEPTAA 171
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 2e-09
Identities = 53/208 (25%), Positives = 91/208 (43%), Gaps = 39/208 (18%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SDL-N 512
++L + G + I G +GSGKS+L +LGGL SG + G + L N
Sbjct: 23 GVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRN 82
Query: 513 KEIFYVPQ-----RPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRY 567
K++ ++ Q +TA L + + L + V+ E+L+ V LE+ ++
Sbjct: 83 KKLGFIYQFHHLLPDFTA---LENVAMPLLIGKKSVKEAKERAY-EMLEKVGLEHRINHR 138
Query: 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV------ 621
P ELS GE+QR+ +AR ++P + DE T +++ +
Sbjct: 139 P--------SELSGGERQRVAIARALVNQPSLVLADEPTG----NLDNNNAKIIFDLMLE 186
Query: 622 --RAMGTSCITISHRPALVAFHDVVLSL 647
R + TS + ++H L D VL +
Sbjct: 187 LNRELNTSFLVVTHDLELAKKLDRVLEM 214
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 2e-09
Identities = 61/210 (29%), Positives = 94/210 (44%), Gaps = 35/210 (16%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNK--------- 513
N++L +E G + + G +G GKS+L R+L GL G ++ G DL +
Sbjct: 29 NVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQ--DLYQLDRKQRRAF 86
Query: 514 --EIFYVPQRPYTAVG---TLRDQLIYPL---TSDQEVEPLTHGGMVELLKNVDLE-YLL 564
++ V Q +AV T+R + PL TS E E + ELL V L
Sbjct: 87 RRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKAR--IAELLDMVGLRSEDA 144
Query: 565 DRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM 624
D+ P + LS G+ QR+ +AR KPK +LDE S + ++ +R +
Sbjct: 145 DKLPRQ--------LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKL 196
Query: 625 ----GTSCITISHRPALV-AFHDVVLSLDG 649
GT+ + I+H LV +F V +D
Sbjct: 197 QQAFGTAYLFITHDLRLVQSFCQRVAVMDK 226
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 2e-09
Identities = 52/186 (27%), Positives = 77/186 (41%), Gaps = 34/186 (18%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
+E + V P G ++N+ L + PG + I GP+G+GKS+L R + L SG I
Sbjct: 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL 61
Query: 505 PGV------GSDLNK---EIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHG------ 549
G G L K I + Q Y LI LT + V HG
Sbjct: 62 EGTDITKLRGKKLRKLRRRIGMIFQH-Y--------NLIERLTVLENV---LHGRLGYKP 109
Query: 550 ---GMVELLKNVDLE---YLLDRYP-PEKEINWGDELSLGEQQRLGMARLFYHKPKFAIL 602
++ D E L+R +K D+LS G+QQR+ +AR +P +
Sbjct: 110 TWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILA 169
Query: 603 DECTSA 608
DE ++
Sbjct: 170 DEPIAS 175
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 3e-09
Identities = 74/306 (24%), Positives = 125/306 (40%), Gaps = 52/306 (16%)
Query: 1024 TQGELAHALRFLASVVSQSFLAFGDIL-ELHRKFVELSGGINRIFELEELLDAAQPGDDE 1082
+ G L F A +V+ S ++ EL R +G R+ EL + A+P +
Sbjct: 273 SAGTLG-QFVFYAVMVAGSIGTLSEVWGELQRA----AGAAERLIELLQ----AEP---D 320
Query: 1083 ISGSSQHKWNSTDYQDSISFSKLDIITPSQ--KLLARQLTFEIVPGKSLLVTGPNGSGKS 1140
I + K + I F +++ P++ + L + PG+++ + GP+G+GKS
Sbjct: 321 IKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKS 380
Query: 1141 SVFRVLRGLWPVVSGSLTKPSQHID--EEAGSGCGIFYVPQRPYTCLGTLRDQIIY---P 1195
++F++L + SG + + + A + VPQ P ++ + I Y
Sbjct: 381 TLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPD 440
Query: 1196 LSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 1255
+ EE E A H ++ + EG +YL ER
Sbjct: 441 ATDEEVEAAARAAHA------------HEFISALPEGYD-TYLGERGVT----------- 476
Query: 1256 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVE-EQLYRLAKDMGITFVTSSQRPAL 1314
LS G++QR+ +AR +LDE T+A +D E EQL + A + R L
Sbjct: 477 LSGGQRQRIAIARAILKDAPILLLDEATSA--LDAESEQLVQQALE-----TLMKGRTTL 529
Query: 1315 IPFHSL 1320
I H L
Sbjct: 530 IIAHRL 535
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 3e-09
Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 25/153 (16%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520
+++++L V+ G GPNG+GK++ +++ GL SG I G N E
Sbjct: 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIE------ 69
Query: 521 RPYTAVGTLRD-QLIYP-LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDE 578
+G L + YP LT+ E L + ++ ++ +LD + D
Sbjct: 70 -ALRRIGALIEAPGFYPNLTA---RENLRLLARLLGIRKKRIDEVLD------VVGLKDS 119
Query: 579 -------LSLGEQQRLGMARLFYHKPKFAILDE 604
SLG +QRLG+A P ILDE
Sbjct: 120 AKKKVKGFSLGMKQRLGIALALLGNPDLLILDE 152
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 3e-09
Identities = 57/205 (27%), Positives = 95/205 (46%), Gaps = 28/205 (13%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------DLNKE 514
+++++ V G + I G NGSGKS+L ++L GL +G I G+ D+ ++
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQ 82
Query: 515 IFYVPQRPYTA-VG-TLRDQLIYPLTSDQEVEPLTHGGMVE----LLKNVDLEYLLDRYP 568
+ V Q P VG T++D + + L E + MVE L+ V +E L+R P
Sbjct: 83 VGMVFQNPDNQFVGATVQDDVAFGL----ENIGVPREEMVERVDQALRQVGMEDFLNREP 138
Query: 569 PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM---- 624
LS G++QR+ +A + +P ILDE TS + VR +
Sbjct: 139 --------HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQK 190
Query: 625 GTSCITISHRPALVAFHDVVLSLDG 649
G + ++I+H A D V+ ++
Sbjct: 191 GITVLSITHDLDEAAQADRVIVMNK 215
|
Length = 279 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 3e-09
Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 32/193 (16%)
Query: 463 NLTLKVE---PGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG-VGSDLNKEIFYV 518
+ TLK++ I G +G+GKS+L R + GL G I G V D K+I
Sbjct: 12 DFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLP 71
Query: 519 PQRPYTAVG------------TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 566
PQ+ +G +R+ L + L + E + ELL + L++LL+R
Sbjct: 72 PQQ--RKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRIS--VDELLDLLGLDHLLNR 127
Query: 567 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGT 626
YP +LS GE+QR+ +AR +P+ +LDE SA+ + + +++ +
Sbjct: 128 YP--------AQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKK 179
Query: 627 S----CITISHRP 635
+ I ++H
Sbjct: 180 NLNIPVIFVTHDL 192
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 3e-09
Identities = 54/198 (27%), Positives = 88/198 (44%), Gaps = 24/198 (12%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL--WPLVSGHIAKPGVG-SDLNKE-- 514
+++ + L V+ G I GPNGSGKS+L + G + + G I G +L+ +
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDER 78
Query: 515 ----IFYVPQRPYTAVG-TLRDQLIYPLTS---DQEVEPLTHGGMVELLKNVDL-EYLLD 565
IF Q P G T D L + + + + P + E + + L E L+
Sbjct: 79 ARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLE 138
Query: 566 RYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM- 624
RY +N G S GE++R + +L +PK AILDE S + D + + A+
Sbjct: 139 RY-----VNEG--FSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR 191
Query: 625 --GTSCITISHRPALVAF 640
G + I+H L+ +
Sbjct: 192 EEGRGVLIITHYQRLLDY 209
|
Length = 251 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 3e-09
Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 29/160 (18%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---AKP--GVGSDL 511
+L L+ + G + I GPNG+GK+SL R+L GL +G + +P +
Sbjct: 13 ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEY 72
Query: 512 NKEIFYVPQRP-----YTAVGTLR--DQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLL 564
++++ Y+ +P TA+ LR +L P + E L G+ E +
Sbjct: 73 HQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGL------AGFEDVP 126
Query: 565 DRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
R LS G+Q+R+ +ARL+ + ILDE
Sbjct: 127 VRQ-----------LSAGQQRRVALARLWLTRAPLWILDE 155
|
Length = 204 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 4e-09
Identities = 54/215 (25%), Positives = 82/215 (38%), Gaps = 31/215 (14%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
IEF V P G ++ + + + G + + GP+G+GKS+L +++ SG I
Sbjct: 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRV 60
Query: 505 PGVG-SDLNKEIFYVPQRPY--TAVGT-LRD-QLIYPLTSDQEV----EPLTHGGMV--- 552
G SDL PY +G +D +L+ + V E
Sbjct: 61 NGQDVSDLRGR-----AIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRK 115
Query: 553 ---ELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
L+ V L + P ELS GEQQR+ +AR + P I DE T +
Sbjct: 116 RVPAALELVGLSHKHRALP--------AELSGGEQQRVAIARAIVNSPTILIADEPTGNL 167
Query: 610 TTDMEERFC---AKVRAMGTSCITISHRPALVAFH 641
D K+ GT+ + +H LV
Sbjct: 168 DPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTT 202
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 5e-09
Identities = 42/172 (24%), Positives = 67/172 (38%), Gaps = 27/172 (15%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
L+EN++L + PG + + G NG+GKS+L ++L G SG + +P +
Sbjct: 15 DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK-----GLRVG 69
Query: 517 YVPQRPY-TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY--------LLDRY 567
Y+ Q P T+ D +I +E+ L D LD +
Sbjct: 70 YLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGW 129
Query: 568 PPEKEIN-----WGD--------ELSLGEQQRLGMARLFYHKPKFAILDECT 606
E G LS G ++R+ +AR +P +LDE T
Sbjct: 130 TLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPT 181
|
Length = 530 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 6e-09
Identities = 57/206 (27%), Positives = 90/206 (43%), Gaps = 51/206 (24%)
Query: 1120 TFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT--------KPSQHIDEEAGSG 1171
+F++ G++L + G +GSGKS++ R+L GL P SGS+ +
Sbjct: 311 SFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRR-- 368
Query: 1172 CGIFYVPQRPYTCL---GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKT 1228
I V Q PY+ L T+ D + PL R E+ + +
Sbjct: 369 --IQMVFQDPYSSLNPRMTVGDILAEPL-------RIHGGGSGAER--------RARVAE 411
Query: 1229 ILEGVRLSY-LLER---EEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTN 1284
+LE V L L+R E LS G++QR+ +AR +PK ILDE +
Sbjct: 412 LLELVGLPPEFLDRYPHE-------------LSGGQRQRVAIARALALEPKLLILDEPVS 458
Query: 1285 ATSVDVEEQ----LYRLAKDMGITFV 1306
A V V+ Q L L +++G+T++
Sbjct: 459 ALDVSVQAQVLNLLKDLQEELGLTYL 484
|
Length = 539 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 6e-09
Identities = 46/181 (25%), Positives = 76/181 (41%), Gaps = 37/181 (20%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
++ +++L +E G + + GP+GSGKS+L R + GL SG I G DL
Sbjct: 12 QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGE--DLTDLED 69
Query: 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWG 576
+P LR ++ Q+ H + +L+N+
Sbjct: 70 ELP--------PLRRRIGMVF---QDFALFPH---LTVLENI-------ALG-------- 100
Query: 577 DELSLGEQQRLGMARLFYHKPKFAILDECTSA---VTTDMEERFCAKVRAM-GTSCITIS 632
LS G+QQR+ +AR P +LDE TSA +T ++A G + + ++
Sbjct: 101 --LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVT 158
Query: 633 H 633
H
Sbjct: 159 H 159
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 6e-09
Identities = 64/225 (28%), Positives = 107/225 (47%), Gaps = 28/225 (12%)
Query: 445 IEFSGVKVVTPTGNVLVE---NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG- 500
+E ++ P+G VE ++L + G + I G +GSGKS+L +LG L SG
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64
Query: 501 -HIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGM------- 551
+A V + L+ + +R + R L+ LT+ Q VE P + G+
Sbjct: 65 YRVAGQDV-ATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLL 123
Query: 552 --VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
ELL+ + LE ++ Y P +LS G+QQR+ +AR + + + DE T A+
Sbjct: 124 RAQELLQRLGLEDRVE-YQP-------SQLSGGQQQRVSIARALMNGGQVILADEPTGAL 175
Query: 610 TTDMEERFCA---KVRAMGTSCITISHRPALVAFHDVVLSL-DGE 650
+ E A ++R G + I ++H P + A + V+ + DGE
Sbjct: 176 DSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGE 220
|
Length = 648 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 7e-09
Identities = 51/219 (23%), Positives = 94/219 (42%), Gaps = 40/219 (18%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCGIF 1175
++ + G+ + +TGP+G GKS++ +++ L SG+L + + EA +
Sbjct: 22 ISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYR-QQVS 80
Query: 1176 YVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRL 1235
Y Q P T+ D +I+P ++R + D LD
Sbjct: 81 YCAQTPALFGDTVEDNLIFP-----WQIRNRR--------PDRAAALD------------ 115
Query: 1236 SYLLEREEVGWDANLNWE-DILSLGEQQRLGMARLFFHKPKFGILDECTNATSV----DV 1290
LL R + D+ L LS GE+QR+ + R PK +LDE T+A ++
Sbjct: 116 --LLARFALP-DSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNI 172
Query: 1291 EEQLYRLA--KDMGITFVTSSQRPALIPFHSLELRLIDG 1327
EE ++R +++ + ++T + A+ + + L G
Sbjct: 173 EEMIHRYVREQNVAVLWITHDKDQAIRHADKV-ITLQPG 210
|
Length = 223 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 7e-09
Identities = 60/216 (27%), Positives = 93/216 (43%), Gaps = 48/216 (22%)
Query: 1118 QLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGC----- 1172
+++F++ PG++L + G +GSGKS+ R L L G + Q ID +
Sbjct: 342 KVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRR 401
Query: 1173 GIFYVPQRPYTCLG---TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTI 1229
I ++ Q PY L T+ D I+ P L++HG +
Sbjct: 402 DIQFIFQDPYASLDPRQTVGDSIMEP----------LRVHG------------------L 433
Query: 1230 LEG----VRLSYLLEREEVGWDANLNWE--DILSLGEQQRLGMARLFFHKPKFGILDECT 1283
L G R+++LLER VG W S G++QR+ +AR PK I DE
Sbjct: 434 LPGKAAAARVAWLLER--VGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAV 491
Query: 1284 NATSVDVEEQ----LYRLAKDMGITFVTSSQRPALI 1315
+A V + Q L L +D GI ++ S A++
Sbjct: 492 SALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVV 527
|
Length = 623 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 7e-09
Identities = 56/202 (27%), Positives = 88/202 (43%), Gaps = 36/202 (17%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCG 1173
R ++ E+ G+ V G NG GK+++ + L GL PV SGS+ + + + G
Sbjct: 17 RGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAG 76
Query: 1174 IFYVPQ-RPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEG 1232
I YVPQ R +I L+ EE L L + + + I + L +L+
Sbjct: 77 IAYVPQGR----------EIFPRLTVEENLLTGLAALPRRSRKIP-DEIYE--LFPVLKE 123
Query: 1233 VRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNAT--SV-- 1288
+ R G D LS G+QQ+L +AR +PK +LDE T S+
Sbjct: 124 ML-----GRR--GGD--------LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIK 168
Query: 1289 DVEEQLYRLAKDMGITFVTSSQ 1310
D+ + RL + G+ + Q
Sbjct: 169 DIGRVIRRLRAEGGMAILLVEQ 190
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 8e-09
Identities = 45/158 (28%), Positives = 69/158 (43%), Gaps = 28/158 (17%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKE------ 514
+ ++L+VE G + + G NG+GK++L + + GL SG I G D+
Sbjct: 19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGE--DITGLPPHERA 76
Query: 515 ---IFYVPQRPYTAVGTLRDQLIYPLTSDQE---VEPLTHGGMVELLKNVDLEYLLDRYP 568
I YVP+ R I+P + +E + + DLE + + +P
Sbjct: 77 RLGIAYVPEG--------RR--IFPRLTVEENLLLGAYARRDKEA--QERDLEEVYELFP 124
Query: 569 PEKEI--NWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
KE LS GEQQ L +AR +PK +LDE
Sbjct: 125 RLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDE 162
|
Length = 237 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 8e-09
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 29/173 (16%)
Query: 476 ITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVP--QRPYTAV------- 526
+ GP+G GK++L R+L G SG I G ++ VP R V
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGE------DVTNVPPHLRHINMVFQSYALF 54
Query: 527 --GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQ 584
T+ + + + L + ++E L+ V LE DR P +LS G+Q
Sbjct: 55 PHMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKP--------HQLSGGQQ 106
Query: 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM----GTSCITISH 633
QR+ +AR KPK +LDE SA+ + ++ +++ + G + + ++H
Sbjct: 107 QRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTH 159
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 8e-09
Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 27/158 (17%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV-GSDLN---KEIF 516
+++++L + G + + GP+GSGK++L R++ GL SG I G +D+ + +
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVG 77
Query: 517 YVPQ-----RPYT-----AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 566
+V Q R T A G LR + + E+ H ELLK V L++L DR
Sbjct: 78 FVFQHYALFRHMTVFDNVAFG-LRVKPRSERPPEAEIRAKVH----ELLKLVQLDWLADR 132
Query: 567 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
YP + LS G++QR+ +AR +PK +LDE
Sbjct: 133 YPAQ--------LSGGQRQRVALARALAVEPKVLLLDE 162
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 9e-09
Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 22/181 (12%)
Query: 427 DKSPQRNGSRNYFSEANYIEFSGVKV-VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKS 485
+K Q N +R + + + FS + VTP +++N++ K+E G L + G GSGKS
Sbjct: 411 EKIKQNNKARKQPNGDDGLFFSNFSLYVTP----VLKNISFKLEKGQLLAVAGSTGSGKS 466
Query: 486 SLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEP 545
SL ++ G G I G I + PQ + GT++D +I+ L+ D+
Sbjct: 467 SLLMMIMGELEPSEGKIKHSG-------RISFSPQTSWIMPGTIKDNIIFGLSYDEY--- 516
Query: 546 LTHGGMVELLKNVDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAIL 602
++K LE + +P + + G+ LS G++ R+ +AR Y +L
Sbjct: 517 ----RYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLL 572
Query: 603 D 603
D
Sbjct: 573 D 573
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 1e-08
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCG 1173
R ++F I PG+SL + GP+GSGKS++ R++ GL SG + D
Sbjct: 19 RNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDH- 77
Query: 1174 IFYVPQRPYTCLGTLRDQI 1192
+ Y+PQ G++ + I
Sbjct: 78 VGYLPQDDELFSGSIAENI 96
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 1e-08
Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 51/210 (24%)
Query: 1111 SQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSL------TKPSQHI 1164
K + + ++ + G + GP+G+GKS++ +++ L GS+ K I
Sbjct: 14 FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVI 73
Query: 1165 DEEAGSGCGIFYVPQRPYTCLGTLRDQIIY-PLSREEAELRALKLHGKGEKLVDTTNILD 1223
D G V Q+P+ GT++D I Y P+ KGEK VD ++
Sbjct: 74 DLRRKIG----MVFQQPHLFEGTVKDNIEYGPML-------------KGEKNVD----VE 112
Query: 1224 SYLKTILEGVRLSYLLEREEVGWDANLNWEDI--LSLGEQQRLGMARLFFHKPKFGILDE 1281
YL VG + D+ LS GE QR+ +AR + P+ +LDE
Sbjct: 113 YYLSI---------------VGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDE 157
Query: 1282 CTNA-----TSVDVEEQLYRLAKDMGITFV 1306
T+A T + +EE + +L M +T +
Sbjct: 158 PTSALDPTSTEI-IEELIVKLKNKMNLTVI 186
|
Length = 241 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 1e-08
Identities = 54/200 (27%), Positives = 86/200 (43%), Gaps = 26/200 (13%)
Query: 466 LKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLN-KEIFYVPQR--- 521
L + G L + GPNG+GK++L R + GL P G + G + I YVPQR
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEF 60
Query: 522 ----PYTAVGTL---RDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEIN 574
P + T+ R I L + + + L+ V L L DR
Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRRPCVAD---FAAVRDALRRVGLTELADRPV------ 111
Query: 575 WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV---TTDMEERFCAKVRAMGTSCITI 631
ELS G++QR+ +AR +P +LDE + + T ++ ++ GT+ +
Sbjct: 112 --GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMT 169
Query: 632 SHR-PALVAFHDVVLSLDGE 650
+H +A D V+ L+G
Sbjct: 170 THDLAQAMATCDRVVLLNGR 189
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 1e-08
Identities = 46/164 (28%), Positives = 68/164 (41%), Gaps = 41/164 (25%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG---------------HIAKP 505
+ ++L V G + + G NG+GK++L + + GL P SG A+
Sbjct: 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARA 75
Query: 506 GVGSDLNKEIFYVPQRPYTAVGTLRDQLIYP-LTSDQEVEPLTHGGMVELLKNV--DLEY 562
G+G YVP+ + I+P LT + E L G LE
Sbjct: 76 GIG--------YVPE----------GRRIFPELTVE---ENLLLGAYARRRAKRKARLER 114
Query: 563 LLDRYPPEKEI--NWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
+ + +P KE LS GEQQ L +AR +PK +LDE
Sbjct: 115 VYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDE 158
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 1e-08
Identities = 58/201 (28%), Positives = 95/201 (47%), Gaps = 16/201 (7%)
Query: 458 NVLVENLTLKVEPGSNLLITGPNGSGKSS----LFRVL---GGLWPLVSGHIAKPGVGSD 510
++++ ++ + + G + I G G+GKSS LFR+ G + +IAK G+ D
Sbjct: 1299 DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGL-HD 1357
Query: 511 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVD-LEYLLDRYPP 569
L +I +PQ P G+LR L P + + E + L V L LD
Sbjct: 1358 LRFKITIIPQDPVLFSGSLRMNL-DPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECA 1416
Query: 570 EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSC- 628
E G+ LS+G++Q + +AR K K +LDE T+AV + + + +R C
Sbjct: 1417 EG----GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCT 1472
Query: 629 -ITISHRPALVAFHDVVLSLD 648
+TI+HR + + V+ LD
Sbjct: 1473 VLTIAHRLNTIMDYTRVIVLD 1493
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 1e-08
Identities = 65/249 (26%), Positives = 110/249 (44%), Gaps = 29/249 (11%)
Query: 411 DRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEP 470
+R+ ELM D Q+ G+ + ++ I+ V N++++N+ L V
Sbjct: 316 ERVFELM---------DGPRQQYGNDDRPLQSGRIDIDNVSFAYRDDNLVLQNINLSVPS 366
Query: 471 GSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG------VGSDLNKEIFYVPQRPYT 524
+ + G GSGKS+L +L G +PL G I G S L + + V Q P
Sbjct: 367 RGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVV 426
Query: 525 AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDE---LSL 581
T + L D ++ + + L+ V L L P G++ LS+
Sbjct: 427 LADTFLANVT--LGRD-----ISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSV 479
Query: 582 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE---RFCAKVRAMGTSCITISHRPALV 638
G++Q L +AR+ P+ ILDE T+ + + E+ + A VR T+ + I+HR + +
Sbjct: 480 GQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREH-TTLVVIAHRLSTI 538
Query: 639 AFHDVVLSL 647
D +L L
Sbjct: 539 VEADTILVL 547
|
Length = 592 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 51/186 (27%), Positives = 82/186 (44%), Gaps = 39/186 (20%)
Query: 1112 QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSG 1171
Q+ + ++ E+ PGK L + GPNG+GKS++ RV+ GL G + + +
Sbjct: 16 QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK--------- 66
Query: 1172 CGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILE 1231
I YVPQ+ L PL+ R L+L +IL + L+
Sbjct: 67 LRIGYVPQK-------LYLDTTLPLTVN----RFLRLRPG----TKKEDILPA-----LK 106
Query: 1232 GVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVE 1291
V+ +L++ LS GE QR+ +AR ++P+ +LDE T V+ +
Sbjct: 107 RVQAGHLIDAP----------MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQ 156
Query: 1292 EQLYRL 1297
LY L
Sbjct: 157 VALYDL 162
|
Length = 251 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 2e-08
Identities = 49/200 (24%), Positives = 82/200 (41%), Gaps = 36/200 (18%)
Query: 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTK 1159
I+ L + + LL ++ + PG+ + + G NG+GKS++ ++L G SG +T+
Sbjct: 4 ITLENLSLAYGDRPLL-ENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTR 62
Query: 1160 PSQHIDEEAGSGCGIFYVPQRPY-TCLGTLRDQII------YPLSREEAELRALKLHGKG 1212
P G + Y+ Q P T+ D +I L E E AL
Sbjct: 63 PK---------GLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDD 113
Query: 1213 EKLVDTTNI---LDSY-----LKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRL 1264
E L + + LD + + L G+ D ++ LS G ++R+
Sbjct: 114 ELLAELEALLEELDGWTLEARAEEALLGLGFP--------DEDRPVS---SLSGGWRRRV 162
Query: 1265 GMARLFFHKPKFGILDECTN 1284
+AR +P +LDE TN
Sbjct: 163 ALARALLEEPDLLLLDEPTN 182
|
Length = 530 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 2e-08
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 579 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCA---KVRAMGTSCITISHR 634
LS+GE+Q + +AR + ILDE T+A+T ER ++RA G + I ISHR
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHR 141
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 59/203 (29%), Positives = 94/203 (46%), Gaps = 28/203 (13%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLN---- 512
G ++V+ + + PGS + GPNGSGKS+L R+L G +G + G DL+
Sbjct: 13 GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDL--AGVDLHGLSR 70
Query: 513 ----KEIFYVPQRPYTAVG-TLRDQLIY---PLTSDQEVEPLTHGGMV-ELLKNVDLEYL 563
+ + V Q TAV T+RD + P S + +V L +L +L
Sbjct: 71 RARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHL 130
Query: 564 LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA 623
DR + LS GE+QR+ +AR +PK +LDE T+ + + A VR
Sbjct: 131 ADR-------DM-STLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRE 182
Query: 624 MGTSCITISHRPALVAFHDVVLS 646
+ + +T+ + A HD+ L+
Sbjct: 183 LAATGVTV-----VAALHDLNLA 200
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 2e-08
Identities = 47/197 (23%), Positives = 77/197 (39%), Gaps = 49/197 (24%)
Query: 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV-----GSDLNK 513
+++NL+L+++ G + + G +GSGKS+L ++L G G I GV L+
Sbjct: 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSS 75
Query: 514 EIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI 573
I + QRPY TLR+
Sbjct: 76 LISVLNQRPYLFDTTLRN------------------------------------------ 93
Query: 574 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITI 631
N G S GE+QRL +AR+ +LDE T + E + + + + + I I
Sbjct: 94 NLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWI 153
Query: 632 SHRPALVAFHDVVLSLD 648
+H + D +L L+
Sbjct: 154 THHLTGIEHMDKILFLE 170
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 55/217 (25%), Positives = 95/217 (43%), Gaps = 35/217 (16%)
Query: 438 YFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL 497
S IE GV + V+++ + L V G L I G +GSGKS+L R++ GL
Sbjct: 2 SASPEPLIEVRGV-TKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP 60
Query: 498 VSGHI-----AKPGVGSDLNKEIF----YVPQRP--YTAVGTLRDQLIYPLTSDQEV-EP 545
G I P + + EI + Q+ ++++ T+ + + +PL ++ E
Sbjct: 61 DKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSL-TVFENVAFPLREHTKLPES 119
Query: 546 LTHGGMVELLKNVDL-EYLLDRYPPEKEINWGDELSLGEQQRLGMAR--------LFYHK 596
L ++ L+ V L D YP ELS G ++R+ +AR LF +
Sbjct: 120 LIRELVLMKLELVGLRGAAADLYP--------SELSGGMRKRVALARAIALDPELLFLDE 171
Query: 597 PKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISH 633
P + LD ++ V ++ A+G + I ++H
Sbjct: 172 P-TSGLDPISAGVIDELIREL---NDALGLTVIMVTH 204
|
Length = 263 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 2e-08
Identities = 69/276 (25%), Positives = 113/276 (40%), Gaps = 27/276 (9%)
Query: 390 FQSLGTLSISSRRLNRLSGYADRIHELMVISREL-SIEDKSPQRNGSRNYFSEANY---I 445
F TL I RL+++ + +++ E +ED P +
Sbjct: 278 FVGFATLLIG--RLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAV 335
Query: 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKP 505
EF V VE+++ + +PG + I GP G+GKS+L +L ++ SG I
Sbjct: 336 EFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILID 395
Query: 506 GVG------SDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELLKN 557
G + L + I V Q ++ D + P +D+E M +
Sbjct: 396 GTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEE--------MRAAAER 447
Query: 558 VDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME 614
++R P + G+ +LS GE+QRL +AR P ILDE TSA+ + E
Sbjct: 448 AQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETE 507
Query: 615 ERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLD 648
+ A + + G + I+HR + V D +L D
Sbjct: 508 AKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFD 543
|
Length = 588 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 3e-08
Identities = 55/184 (29%), Positives = 80/184 (43%), Gaps = 40/184 (21%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176
+ ++F I PG+ + + G GSGKSS+ L L + SGS+ ID S G+
Sbjct: 21 KNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSIL-----IDGVDISKIGLHD 75
Query: 1177 -------VPQRPYTCLGTLRDQIIYPLSR-EEAEL-RALKLHGKGEKLVDTTNILDSYLK 1227
+PQ P GT+R + P + EL +AL+ G E + LD+ +
Sbjct: 76 LRSRISIIPQDPVLFSGTIRSNLD-PFGEYSDEELWQALERVGLKEFVESLPGGLDTVV- 133
Query: 1228 TILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATS 1287
EE G + LS+G++Q L +AR K K +LDE T S
Sbjct: 134 --------------EEGG--------ENLSVGQRQLLCLARALLRKSKILVLDEAT--AS 169
Query: 1288 VDVE 1291
VD E
Sbjct: 170 VDPE 173
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 3e-08
Identities = 45/181 (24%), Positives = 76/181 (41%), Gaps = 35/181 (19%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176
+ + E+ G+ + + GP GSGKSS+ L G +SGS++ P I Y
Sbjct: 22 KDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-----------SIAY 70
Query: 1177 VPQRPYTCLGTLRDQIIYPLSREEAEL-RALKLHGKGEKLVDTTNILDSYLKTILEGVRL 1235
V Q P+ GT+R+ I++ +E + +K L IL T
Sbjct: 71 VSQEPWIQNGTIRENILFGKPFDEERYEKVIKACA----LEPDLEILPDGDLT------- 119
Query: 1236 SYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLY 1295
E+G + +N LS G++QR+ +AR + +LD+ +A V ++
Sbjct: 120 -------EIG-EKGIN----LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIF 167
Query: 1296 R 1296
Sbjct: 168 E 168
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 3e-08
Identities = 18/46 (39%), Positives = 34/46 (73%)
Query: 1113 KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT 1158
++L L+F + G++L++TGPNGSGK+++ R++ GL P +G++
Sbjct: 15 RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIK 60
|
Length = 207 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 3e-08
Identities = 62/224 (27%), Positives = 95/224 (42%), Gaps = 39/224 (17%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS---LTKPSQHIDEEA----- 1168
+ + + G+++ + GP+GSGKS++ VL GL SG L +P +DE+A
Sbjct: 27 KGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALR 86
Query: 1169 GSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKT 1228
G V Q +I L+ E AL L +GE D+ + L+
Sbjct: 87 ARHVGF--VFQS---------FHLIPNLTALENV--ALPLELRGESSADSRAGAKALLEA 133
Query: 1229 ILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECT----N 1284
+ G RL++ + LS GEQQR+ +AR F +P DE T
Sbjct: 134 VGLGKRLTHYPAQ--------------LSGGEQQRVALARAFAGRPDVLFADEPTGNLDR 179
Query: 1285 ATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGE 1328
AT + + L+ L ++ G T V + P L +LRL G
Sbjct: 180 ATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGR 223
|
Length = 228 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 3e-08
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 578 ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM---GTSCITISHR 634
+LS G++QR+ +AR P +LDE TS + ER +R + G + I ++H
Sbjct: 80 QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHD 139
Query: 635 PALVAFH-DVVLSLD 648
P L D V+ L
Sbjct: 140 PELAELAADRVIVLK 154
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 3e-08
Identities = 61/234 (26%), Positives = 93/234 (39%), Gaps = 38/234 (16%)
Query: 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTK 1159
+ L + P+ K + + I PG+ + + GP+G+GKS++ R + L SGS+
Sbjct: 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL 61
Query: 1160 PSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQI--IYPLSREEAELRALK--LHGKGEKL 1215
I + G L LR +I I+ L L+ LHG+
Sbjct: 62 EGTDITKLRGKK-------------LRKLRRRIGMIFQHYNLIERLTVLENVLHGR---- 104
Query: 1216 VDTTNILDSYLKTI--LEGVRLSYLLEREEVGWDANLNWE-DILSLGEQQRLGMARLFFH 1272
+ S L + R LER VG D LS G+QQR+ +AR
Sbjct: 105 LGYKPTWRSLLGRFSEEDKERALSALER--VGLADKAYQRADQLSGGQQQRVAIARALAQ 162
Query: 1273 KPKFGILDECTN----ATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLEL 1322
+P + DE TS V + L R+ K+ GIT +I H ++L
Sbjct: 163 QPDLILADEPIASLDPKTSKQVMDYLKRINKEDGIT--------VIINLHQVDL 208
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.1 bits (135), Expect = 3e-08
Identities = 48/174 (27%), Positives = 80/174 (45%), Gaps = 51/174 (29%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI-------------- 502
G +VE+++L V G + + GPNG+GK++ F ++ G+ P +G+I
Sbjct: 15 GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHA 74
Query: 503 -AKPGVGSDLNKEIFYVPQRP-----------YTAVGTLRDQLIYPLTSDQEVEPLTHGG 550
A+ G+G Y+PQ AV +RD L+++Q +
Sbjct: 75 RARRGIG--------YLPQEASIFRRLSVYDNLMAVLQIRDD----LSAEQREDR----- 117
Query: 551 MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
EL++ +E+L D + G LS GE++R+ +AR PKF +LDE
Sbjct: 118 ANELMEEFHIEHLRD--------SMGQSLSGGERRRVEIARALAANPKFILLDE 163
|
Length = 241 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 4e-08
Identities = 53/224 (23%), Positives = 88/224 (39%), Gaps = 55/224 (24%)
Query: 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTK 1159
+ + ++L + + G+ + + GP+G GKS++ R++ GL SG +
Sbjct: 4 LEIEGVSKSFGGVEVL-EDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLL 62
Query: 1160 PSQHIDEEAGSGCGIFYVPQRPYTCLG--TLRDQIIYPL-----SREEAELRALKLHGKG 1212
+ G G I YV Q L T+ D + L S+ EA RA +L
Sbjct: 63 DGR---PVTGPGPDIGYVFQE-DALLPWLTVLDNVALGLELRGKSKAEARERAKEL---- 114
Query: 1213 EKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFH 1272
LE V L+ ++ + LS G +QR+ +AR
Sbjct: 115 -----------------LELVGLAGFEDK----------YPHQLSGGMRQRVAIARALAT 147
Query: 1273 KPK-------FGILDECTNATSVDVEEQLYRLAKDMGIT--FVT 1307
+PK FG LD T +++++L RL ++ T VT
Sbjct: 148 RPKLLLLDEPFGALDA---LTREELQDELLRLWEETRKTVLLVT 188
|
Length = 248 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (140), Expect = 4e-08
Identities = 60/222 (27%), Positives = 102/222 (45%), Gaps = 27/222 (12%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI-------AKPGVGSDLN 512
++ L+ V P + + G G+GKSS+ L + L G I AK G+ +DL
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGL-TDLR 1309
Query: 513 KEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYP--PE 570
+ + +PQ P GT+R I P + + + E L+ ++ ++DR P +
Sbjct: 1310 RVLSIIPQSPVLFSGTVRFN-IDPFSEHND------ADLWEALERAHIKDVIDRNPFGLD 1362
Query: 571 KEINWGDE-LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSC- 628
E++ G E S+G++Q L +AR + K +LDE T++V + +R SC
Sbjct: 1363 AEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCT 1422
Query: 629 -ITISHRPALVAFHDVVLSLDGEGEWRVHD------KRDGSS 663
+ I+HR + D +L L G+ +D RD S+
Sbjct: 1423 MLVIAHRLNTIIDCDKILVLSS-GQVLEYDSPQELLSRDTSA 1463
|
Length = 1495 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 4e-08
Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 64/162 (39%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
IE + T G +L+++++L + PG + + G NG+GKS+L +++ G
Sbjct: 1 IELENLSK-TYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAG----------- 48
Query: 505 PGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLL 564
E+EP G+V V + Y
Sbjct: 49 -------------------------------------ELEP--DEGIVTWGSTVKIGYF- 68
Query: 565 DRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606
++LS GE+ RL +A+L P +LDE T
Sbjct: 69 ------------EQLSGGEKMRLALAKLLLENPNLLLLDEPT 98
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 4e-08
Identities = 60/249 (24%), Positives = 104/249 (41%), Gaps = 54/249 (21%)
Query: 447 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP---------- 496
F GVK + + + L+V PG + + G NG+GKS+L ++L G++P
Sbjct: 11 FGGVKAL--------DGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYW 62
Query: 497 ----LVSGHIA---KPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYP--LTSDQEVEPLT 547
L + +I + G+ +++E+ VP+ L +++ P +
Sbjct: 63 SGSPLKASNIRDTERAGI-VIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNA----- 116
Query: 548 HGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
M KN+ E LD + + + G+QQ + +A+ + + ILDE +S
Sbjct: 117 ---MYLRAKNLLRELQLDADNVTRPVG---DYGGGQQQLVEIAKALNKQARLLILDEPSS 170
Query: 608 AVTTDMEERFCAKVR---AMGTSCITISHRPALV-AFHDVVLSLDGEGEWRVHDKRDGSS 663
++T E +R A G +C+ ISH+ V A D + + RDG
Sbjct: 171 SLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVI-----------RDGQH 219
Query: 664 VVTKSGINM 672
V TK M
Sbjct: 220 VATKDMSTM 228
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 53.9 bits (131), Expect = 5e-08
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 8/80 (10%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCGIF 1175
++ I PG+ + + GP+GSGKS++ ++L L+ SG + + +D E+ I
Sbjct: 21 VSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKN-IA 79
Query: 1176 YVPQRPYTCL--GTLRDQII 1193
YVPQ P+ L GT+R+ I+
Sbjct: 80 YVPQDPF--LFSGTIRENIL 97
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 7e-08
Identities = 50/192 (26%), Positives = 74/192 (38%), Gaps = 38/192 (19%)
Query: 428 KSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSL 487
K P GS N+F V+ +++ ++ G + G NG+GKS+
Sbjct: 18 KEPGLKGSLNHFFHRKERSIEAVQ-----------DISFEIPKGEIVGFLGANGAGKSTT 66
Query: 488 FRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEP 545
++L GL SG + G +E + R V + QL + P EV
Sbjct: 67 LKMLTGLLLPTSGKVRVNGKDPFRRREEY---LRSIGLVMGQKLQLWWDLPALDSLEVLK 123
Query: 546 L-----------THGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594
L + E+L DLE L ++P K LSLG++ R +A
Sbjct: 124 LIYEIPDDEFAERLDFLTEIL---DLEGFL-KWPVRK-------LSLGQRMRAELAAALL 172
Query: 595 HKPKFAILDECT 606
H PK LDE T
Sbjct: 173 HPPKVLFLDEPT 184
|
Length = 325 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 8e-08
Identities = 50/186 (26%), Positives = 75/186 (40%), Gaps = 48/186 (25%)
Query: 1118 QLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYV 1177
L+F + G++L VTGPNGSGK+++ R+L GL P ++G + +D + S
Sbjct: 18 GLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDS------- 70
Query: 1178 PQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSY 1237
R LG H G K ++LE +R +
Sbjct: 71 IARGLLYLG----------------------HAPGIKTT----------LSVLENLRFWH 98
Query: 1238 LLEREEVGWDA----NLN-WEDI----LSLGEQQRLGMARLFFHKPKFGILDECTNATSV 1288
+E +A LN +ED LS G+Q+R+ +ARL ILDE T A
Sbjct: 99 ADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDK 158
Query: 1289 DVEEQL 1294
+
Sbjct: 159 AGVARF 164
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 8e-08
Identities = 53/199 (26%), Positives = 87/199 (43%), Gaps = 32/199 (16%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176
++FE+ PG+ + GPNG+GK++ FR++ GL G +T + +E + G Y
Sbjct: 19 DNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIG--Y 76
Query: 1177 VP-QRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRL 1235
+P +R T+ DQ+ Y L+ L G + + +L
Sbjct: 77 LPEERGLYPKMTVEDQLKY-LAE---------LKGMPKAEIQK---------------KL 111
Query: 1236 SYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDE-CTNATSVDVE--E 1292
LER E+ ++ LS G QQ++ H+P+ ILDE + V+VE +
Sbjct: 112 QAWLERLEIVGKKTKKIKE-LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLK 170
Query: 1293 QLYRLAKDMGITFVTSSQR 1311
K+ G T + SS R
Sbjct: 171 DAIFELKEEGATIIFSSHR 189
|
Length = 300 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 8e-08
Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 32/203 (15%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176
++F + G+ + GPNG+GK++ R++ G+ SG + + +D A + G Y
Sbjct: 17 DDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIG--Y 74
Query: 1177 VPQ-RPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRL 1235
+P+ R + DQ++Y A+L+ LK R+
Sbjct: 75 LPEERGLYPKMKVIDQLVY-----LAQLKGLKKEEARR--------------------RI 109
Query: 1236 SYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNA---TSVDVEE 1292
LER E+ AN E+ LS G QQ++ H P+ ILDE + +V++ +
Sbjct: 110 DEWLERLELSEYANKRVEE-LSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLK 168
Query: 1293 QLYRLAKDMGITFVTSSQRPALI 1315
+ R G T + S+ + L+
Sbjct: 169 DVIRELARAGKTVILSTHQMELV 191
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 8e-08
Identities = 56/223 (25%), Positives = 95/223 (42%), Gaps = 68/223 (30%)
Query: 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKP 505
F GVK + +N++LKV G + + G NG+GKS+L +VL G++P G
Sbjct: 14 TFGGVKAL--------DNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP--HG----- 58
Query: 506 GVGSDLNKEIFYVPQRPYTAVGTLRDQ------LIYPLTSDQEV---------------E 544
EI + + A +RD +I+ QE+
Sbjct: 59 ----TYEGEIIFEGE-ELQA-SNIRDTERAGIAIIH-----QELALVKELSVLENIFLGN 107
Query: 545 PLTHGGMV----------ELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594
+T GG++ +LL + L+ ++ P L LG+QQ + +A+
Sbjct: 108 EITPGGIMDYDAMYLRAQKLLAQLKLD--INPATPVG------NLGLGQQQLVEIAKALN 159
Query: 595 HKPKFAILDECTSAVT---TDMEERFCAKVRAMGTSCITISHR 634
+ + ILDE T+++T T + ++A G +CI ISH+
Sbjct: 160 KQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHK 202
|
Length = 506 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 9e-08
Identities = 57/199 (28%), Positives = 86/199 (43%), Gaps = 32/199 (16%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSD---------L 511
VE ++ + PG L + G +GSGKS+ R L L G I G D L
Sbjct: 340 VEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQAL 399
Query: 512 NKEIFYVPQRPYTAVG---TLRDQLIYPLTSDQEVEPLTHGG-----MVELLKNVDLEYL 563
++I ++ Q PY ++ T+ D ++ PL V L G + LL+ V L
Sbjct: 400 RRDIQFIFQDPYASLDPRQTVGDSIMEPL----RVHGLLPGKAAAARVAWLLERVGLL-- 453
Query: 564 LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV-- 621
PE + E S G++QR+ +AR PK I DE SA+ + + +
Sbjct: 454 -----PEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLD 508
Query: 622 --RAMGTSCITISHRPALV 638
R G + + ISH A+V
Sbjct: 509 LQRDFGIAYLFISHDMAVV 527
|
Length = 623 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 9e-08
Identities = 53/214 (24%), Positives = 83/214 (38%), Gaps = 44/214 (20%)
Query: 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYV 518
V++++L L +E G I G +GSGKS+L ++G L SG + G +
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNG---QETPPLNSK 68
Query: 519 PQRPYTAVGTLRDQLIY-----PLTSDQEVE-----PLTHGG---------MVELLKNVD 559
+ R++L Y L ++ VE L + E L+ V
Sbjct: 69 KASKF-----RREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVG 123
Query: 560 LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER--- 616
L L + ELS GEQQR+ +AR P + DE T ++ D + R
Sbjct: 124 LNLKLKQKI--------YELSGGEQQRVALARAILKPPPLILADEPTGSL--DPKNRDEV 173
Query: 617 ---FCAKVRAMGTSCITISHRPALVAFHDVVLSL 647
G + I ++H P + D V+ L
Sbjct: 174 LDLLLELNDE-GKTIIIVTHDPEVAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 9e-08
Identities = 50/192 (26%), Positives = 88/192 (45%), Gaps = 29/192 (15%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
G V++++L + G + G +G GKS+L R+L G +G I GV DL+
Sbjct: 31 GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGV--DLS---- 84
Query: 517 YVP--QRPYTAV---------GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLD 565
+VP QRP + T+ + + L D+ + + E+L V ++
Sbjct: 85 HVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAK 144
Query: 566 RYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV---- 621
R P +LS G++QR+ +AR +PK +LDE A+ + +R +V
Sbjct: 145 RKP--------HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDIL 196
Query: 622 RAMGTSCITISH 633
+G +C+ ++H
Sbjct: 197 ERVGVTCVMVTH 208
|
Length = 377 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 1e-07
Identities = 58/218 (26%), Positives = 91/218 (41%), Gaps = 59/218 (27%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGC---- 1172
L+ + PG+ L + GP+G GK+++ R++ GL SG + ID +G
Sbjct: 17 DDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL-----IDGRDVTGVPPER 71
Query: 1173 -GIFYVPQRP--YTCLGTLRDQIIYPL-----SREEAELRALKLHGKGEKLVDTTNILDS 1224
I V Q + L T+ + I + L + E R +
Sbjct: 72 RNIGMVFQDYALFPHL-TVAENIAFGLKLRGVPKAEIRARVRE----------------- 113
Query: 1225 YLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTN 1284
+LE V L LL R + LS G+QQR+ +AR +P +LDE +
Sbjct: 114 ----LLELVGLEGLLNR----------YPHELSGGQQQRVALARALAREPSLLLLDEPLS 159
Query: 1285 ATSVDVE------EQLYRLAKDMGIT--FVTSSQRPAL 1314
A +D + E+L L +++GIT +VT Q AL
Sbjct: 160 A--LDAKLREELREELKELQRELGITTIYVTHDQEEAL 195
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 1e-07
Identities = 43/196 (21%), Positives = 72/196 (36%), Gaps = 67/196 (34%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCG-IFYV 1177
++ + G+ + GPNG+GK+++ +++ GL SG + + I +E I Y+
Sbjct: 19 ISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYL 78
Query: 1178 PQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSY 1237
P+ P L L T+ E ++LS
Sbjct: 79 PEEPS---------------------------------------LYENL-TVRENLKLS- 97
Query: 1238 LLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNA----TSVDVEEQ 1293
G +QRL +A+ H P+ ILDE T+ + + E
Sbjct: 98 --------------------GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWEL 137
Query: 1294 LYRLAKDMGITFVTSS 1309
L L K+ G T + SS
Sbjct: 138 LRELKKE-GKTILLSS 152
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 1e-07
Identities = 52/204 (25%), Positives = 88/204 (43%), Gaps = 46/204 (22%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHID------EEAG--- 1169
+T + G++L++ GP+G+GKSS+ RVL L SG+L H D ++A
Sbjct: 21 ITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDL 80
Query: 1170 -SGCGIFYVPQRPYTCLGTLRDQIIYP-----LSREEAELRALKLHGKGEKLVDTTNILD 1223
G+ + + L + I P LS+++A RA KL
Sbjct: 81 RRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKL--------------- 125
Query: 1224 SYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECT 1283
L+ +RL +R + LS G+QQR+ +AR +P+ + DE T
Sbjct: 126 ------LKRLRLKPYADR----------YPLHLSGGQQQRVAIARALMMEPQVLLFDEPT 169
Query: 1284 NATSVDVEEQLYRLAKDMGITFVT 1307
A ++ Q+ + K++ T +T
Sbjct: 170 AALDPEITAQIVSIIKELAETGIT 193
|
Length = 242 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 48/153 (31%), Positives = 68/153 (44%), Gaps = 23/153 (15%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---AKPGVGSDLNKEIFY 517
V N++L V S + GPNG+GKS+L +++ G+ SG I P DL+K
Sbjct: 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSL 75
Query: 518 VPQRPYTAVGTLRDQLIYPLT----SDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI 573
+ P T R+ L T D ++ E+L VDL + K
Sbjct: 76 IESPPLYENLTARENLKVHTTLLGLPDSRID--------EVLNIVDLTNTGKK--KAK-- 123
Query: 574 NWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606
+ SLG +QRLG+A + PK ILDE T
Sbjct: 124 ----QFSLGMKQRLGIAIALLNHPKLLILDEPT 152
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 1e-07
Identities = 46/196 (23%), Positives = 77/196 (39%), Gaps = 50/196 (25%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL--WPLVSGHIAKPGVG-SDLNK 513
G +++ + L ++ G + GPNGSGKS+L + + G + + G I G +DL
Sbjct: 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPP 71
Query: 514 E------IFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRY 567
E IF Q P E+ + + L+ V+
Sbjct: 72 EERARLGIFLAFQYPP------------------EIPGVK---NADFLRYVN-------- 102
Query: 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTD---MEERFCAKVRAM 624
+ S GE++R + +L +P AILDE S + D + K+R
Sbjct: 103 ---------EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE 153
Query: 625 GTSCITISHRPALVAF 640
G S + I+H L+ +
Sbjct: 154 GKSVLIITHYQRLLDY 169
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 50/191 (26%), Positives = 83/191 (43%), Gaps = 29/191 (15%)
Query: 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYV 518
V+ ++ V+PG + GPNG+GK++ R+L GL +G G D+ KE
Sbjct: 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGF--DVVKEPAEA 76
Query: 519 PQRPYTAVGTLRDQL-IYP-LTSDQEVEPLT----------HGGMVELLKNVDLEYLLDR 566
+R +G + D +Y LT+ + +E + EL + +E LLDR
Sbjct: 77 RRR----LGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDR 132
Query: 567 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA---VTTDMEERFCAKVRA 623
S G +Q++ +AR H P +LDE T+ + T F ++RA
Sbjct: 133 R--------VGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA 184
Query: 624 MGTSCITISHR 634
+G + +H
Sbjct: 185 LGKCILFSTHI 195
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 1e-07
Identities = 55/213 (25%), Positives = 92/213 (43%), Gaps = 37/213 (17%)
Query: 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502
+E G+ P G V ++++L V+ G + G NG+GKS+L ++L GL+ SG I
Sbjct: 3 PALEMRGITKRFP-GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61
Query: 503 ------AKPGVGSDLNKE-IFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELL 555
+ D + I V Q L+ LT E + G
Sbjct: 62 RVDGKEVRIKSPRDAIRLGIGMVHQHF---------MLVPTLTV---AENIILGLEPSKG 109
Query: 556 KNVD-------LEYLLDRY----PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
+D ++ L +RY P+ ++ +LS+GEQQR+ + + Y + ILDE
Sbjct: 110 GLIDRRQARARIKELSERYGLPVDPDAKVA---DLSVGEQQRVEILKALYRGARLLILDE 166
Query: 605 CTSAVTTDMEERFCAKVR---AMGTSCITISHR 634
T+ +T + +R A G + I I+H+
Sbjct: 167 PTAVLTPQEADELFEILRRLAAEGKTIIFITHK 199
|
Length = 501 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 1e-07
Identities = 51/199 (25%), Positives = 93/199 (46%), Gaps = 40/199 (20%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520
+++++L ++ G + + GP+G+GKS+L R++ GL +G I + + ++ +
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIR---LNGRVLFDVSNLAV 74
Query: 521 RPYTAVG------------TLRDQLIYPLT------SDQEVEPLTHGGMVELLKNVDLEY 562
R VG T+ D + + L S+ E+ ELL+ V LE
Sbjct: 75 RD-RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVE----ELLRLVQLEG 129
Query: 563 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA----VTTDMEERFC 618
L DRYP + LS G++QR+ +AR +PK +LDE A V ++ R+
Sbjct: 130 LADRYPAQ--------LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKEL-RRWL 180
Query: 619 AKVRA-MGTSCITISHRPA 636
K+ +G + + ++H
Sbjct: 181 RKLHDRLGVTTVFVTHDQE 199
|
Length = 345 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (131), Expect = 1e-07
Identities = 55/174 (31%), Positives = 79/174 (45%), Gaps = 39/174 (22%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV------GSD 510
G L+++++L + PG + I GPNG+GKS+L R L G SG + G ++
Sbjct: 14 GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAE 73
Query: 511 LNKEIFYVPQR-----PYTA---VGTLRDQLIYPLT-SDQEVEPLTHGGMVELLKNVDLE 561
L + +PQ P+T V R P S E + L L VDL
Sbjct: 74 LARRRAVLPQHSSLSFPFTVEEVVAMGR----APHGLSRAEDDALVA----AALAQVDLA 125
Query: 562 YLLDR-YPPEKEINWGDELSLGEQQRLGMARLF------YHKPKFAILDECTSA 608
+L R YP +LS GEQQR+ +AR+ P++ +LDE TSA
Sbjct: 126 HLAGRDYP---------QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSA 170
|
Length = 258 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 42/193 (21%), Positives = 72/193 (37%), Gaps = 44/193 (22%)
Query: 440 SEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS 499
+ + G +E+++L + G +++ GP+G GK++L ++ G
Sbjct: 6 VSHLSLSYEGK------PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSR 59
Query: 500 GHIAKPGVGSDLNKEIFYVPQRPYTAVGTLR------DQLIYPLTSDQEVE-PLTHGGM- 551
G I G R G R + L+ L V L G+
Sbjct: 60 GSIQLNG--------------RRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIE 105
Query: 552 --------VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILD 603
++L V LE +Y W +LS G +QR+G+AR +P+ +LD
Sbjct: 106 KAQRREIAHQMLALVGLEGAEHKYI------W--QLSGGMRQRVGIARALAVEPQLLLLD 157
Query: 604 ECTSAVTTDMEER 616
E A+ E+
Sbjct: 158 EPFGALDALTREQ 170
|
Length = 259 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 28/163 (17%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG--HIA----------KPGVGSD 510
++TL G L++ GP+G+GKSSL RVL L SG +IA +
Sbjct: 20 DITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79
Query: 511 LNKEIFYVPQR----PYTAVGTLRDQLI-YPLTSDQEVEPLTHGGMVELLKNVDLEYLLD 565
L + + V Q+ P+ T++ LI P + +LL+ + L+ D
Sbjct: 80 LRRNVGMVFQQYNLWPHL---TVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYAD 136
Query: 566 RYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
R+P LS G+QQR+ +AR +P+ + DE T+A
Sbjct: 137 RFPLH--------LSGGQQQRVAIARALMMEPQVLLFDEPTAA 171
|
Length = 242 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 1256 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDM---GITFVTSSQRP 1312
LS G++QR+ +AR P +LDE T+ E+L L +++ G T + + P
Sbjct: 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP 140
Query: 1313 ALIPFHSLE-LRLIDGE 1328
L + + L DG+
Sbjct: 141 ELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 2e-07
Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 34/160 (21%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKE-------- 514
++L+V G + G NG GK++L + L GL P+ SG I G D+ K
Sbjct: 18 GVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGE--DITKLPPHERARA 75
Query: 515 -IFYVPQRPYTAVGTLRDQLIYPLTSDQE-----VEPLTHGGMVELLKNVDLEYLLDRYP 568
I YVPQ + I+P + +E + L + + + + + +P
Sbjct: 76 GIAYVPQ----------GREIFPRLTVEENLLTGLAALPRRS-----RKIP-DEIYELFP 119
Query: 569 PEKEI--NWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606
KE+ G +LS G+QQ+L +AR +PK +LDE T
Sbjct: 120 VLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 2e-07
Identities = 55/256 (21%), Positives = 107/256 (41%), Gaps = 35/256 (13%)
Query: 358 FFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELM 417
G+L P + + LR +++ +L + ++S +R+ L +RI
Sbjct: 547 LLGGDLTP-ARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERI---- 601
Query: 418 VISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLIT 477
+++ ++ +P + YFS K PT + ++ L++ GS + I
Sbjct: 602 -LAQNPPLQPGAPAISIKNGYFS-------WDSKTSKPT----LSDINLEIPVGSLVAIV 649
Query: 478 GPNGSGKSSLFR-VLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYP 536
G G GK+SL +LG L + + + + YVPQ + T+R+ +++
Sbjct: 650 GGTGEGKTSLISAMLGELSHAETSSV-------VIRGSVAYVPQVSWIFNATVRENILF- 701
Query: 537 LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDE---LSLGEQQRLGMARLF 593
+ E + +++ L++ LD P G+ +S G++QR+ MAR
Sbjct: 702 ---GSDFESERYWRAIDV---TALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAV 755
Query: 594 YHKPKFAILDECTSAV 609
Y I D+ SA+
Sbjct: 756 YSNSDIYIFDDPLSAL 771
|
Length = 1495 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 61/213 (28%), Positives = 95/213 (44%), Gaps = 32/213 (15%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKS-SLFRVLGGLWP---LVSGHIAKPGVGSDLN--- 512
LV++L L ++ G L + G +GSGKS + +LG L P SG I G L
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGR--PLLPLS 58
Query: 513 ---KEIFYVPQRPYTA---VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDL---EYL 563
+ I + Q P TA + T+ + I L S ++ ++E L+ V L E +
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEV 118
Query: 564 LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA 623
L +YP +LS G QR+ +A +P F I DE T+ + + R +R
Sbjct: 119 LKKYP--------FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRE 170
Query: 624 M----GTSCITISHRPALVAF--HDVVLSLDGE 650
+ GT + I+H +VA +V + DG
Sbjct: 171 LRQLFGTGILLITHDLGVVARIADEVAVMDDGR 203
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 2e-07
Identities = 52/212 (24%), Positives = 96/212 (45%), Gaps = 40/212 (18%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
IE G+ + G +++ + L V G L I GP+GSGKS+L R++ GL SG +
Sbjct: 1 IELRGL-TKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLI 59
Query: 505 PG--VGSDLNKEIFYVPQRPYTAVG------------TLRDQLIYPLT-----SDQEVEP 545
G + E++ + +R +G T+ + + +PL S++E+
Sbjct: 60 DGEDISGLSEAELYRLRRR----MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIRE 115
Query: 546 LTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDEC 605
+ +E L+ V L D YP ELS G ++R+ +AR P+ + DE
Sbjct: 116 IV----LEKLEAVGLRGAEDLYP--------AELSGGMKKRVALARALALDPELLLYDEP 163
Query: 606 TSA---VTTDMEERFCAKV-RAMGTSCITISH 633
T+ + + + + + + +G + I ++H
Sbjct: 164 TAGLDPIASGVIDDLIRSLKKELGLTSIMVTH 195
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 3e-07
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCG 1173
++ + G+ + + GPNGSGKS++ R + GL SG + K + E
Sbjct: 16 DNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRR-R 74
Query: 1174 IFYVPQ 1179
I YVPQ
Sbjct: 75 IGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 3e-07
Identities = 55/190 (28%), Positives = 86/190 (45%), Gaps = 36/190 (18%)
Query: 465 TLKVEPGSN-----LLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVP 519
L+VE G + I GPNG GK++ ++L G+ KP GS+ + ++ Y P
Sbjct: 356 KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGV--------IKPDEGSEEDLKVSYKP 407
Query: 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDE 578
Q GT+ L+ E++K ++LE LL+R DE
Sbjct: 408 QYISPDYDGTVE-DLLRSAIRSAFGSSYFK---TEIVKPLNLEDLLERPV--------DE 455
Query: 579 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF-CAKV--RAMGTSCITISHRP 635
LS GE QR+ +A + +LDE ++ + D+E+R AKV R + + T
Sbjct: 456 LSGGELQRVAIAAALSREADLYLLDEPSAYL--DVEQRIIVAKVIRRFIENNEKT----- 508
Query: 636 ALVAFHDVVL 645
ALV HD+ +
Sbjct: 509 ALVVDHDIYM 518
|
Length = 591 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 3e-07
Identities = 60/209 (28%), Positives = 95/209 (45%), Gaps = 29/209 (13%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------DLNKE 514
+ +++ V+ G L I G NGSGKS+ R++ GL SG I G D+ +
Sbjct: 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK 82
Query: 515 IFYVPQRPYTA-VG-TLRDQLIYPLTSDQEVEPLTHGGMV----ELLKNVDLEYLLDRYP 568
I V Q P VG T+ D + + L E + + H M E L+ V ++ +R P
Sbjct: 83 IGMVFQNPDNQFVGATVEDDVAFGL----ENKGIPHEEMKERVNEALELVGMQDFKEREP 138
Query: 569 PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM---- 624
LS G++QR+ +A +PK ILDE TS + + ++ +
Sbjct: 139 A--------RLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDY 190
Query: 625 GTSCITISHRPALVAFHDVVLSL-DGEGE 652
+ I+I+H VA D VL + +G+ E
Sbjct: 191 QMTVISITHDLDEVALSDRVLVMKNGQVE 219
|
Length = 279 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 50/192 (26%), Positives = 86/192 (44%), Gaps = 41/192 (21%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520
++ L V G + + GP+GSGKS++ R+L L P+ G I G ++++++P
Sbjct: 16 LDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEG------EQLYHMPG 69
Query: 521 R-----PYTA--VGTLRDQL--------IYPLTS--DQEVE-PLTHGGM---------VE 553
R P + +R+++ ++P + D E P+ GM +E
Sbjct: 70 RNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAME 129
Query: 554 LLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 613
LL V L D P +LS G+QQR+ +AR +PK + DE TSA+ ++
Sbjct: 130 LLDMVGLADKADHMPA--------QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPEL 181
Query: 614 EERFCAKVRAMG 625
+R +
Sbjct: 182 VGEVLNVIRRLA 193
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 3e-07
Identities = 53/192 (27%), Positives = 82/192 (42%), Gaps = 29/192 (15%)
Query: 466 LKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLN------------K 513
L V+ G + + G +GSGKS+L +L GL SG ++ VG L+ K
Sbjct: 31 LVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSL--VGQPLHQMDEEARAKLRAK 88
Query: 514 EIFYVPQRPYTAVGTL--RDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEK 571
+ +V Q + + TL + + P E + G LL+ + L LD P +
Sbjct: 89 HVGFVFQS-FMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQ- 146
Query: 572 EINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV----RAMGTS 627
LS GEQQR+ +AR F +P DE T + ++ + R GT+
Sbjct: 147 -------LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTT 199
Query: 628 CITISHRPALVA 639
I ++H L A
Sbjct: 200 LILVTHDLQLAA 211
|
Length = 228 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 3e-07
Identities = 63/217 (29%), Positives = 103/217 (47%), Gaps = 45/217 (20%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKE----- 514
+ N++L ++ G + + G +G GKS+L R+L GL G+++ G + LN+
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAF 87
Query: 515 ---IFYVPQRPYTAVG---TLRDQLIYP---LTSDQEVEPLTHGGMVELLKNVDL-EYLL 564
I V Q +AV T+R+ + P L S + E L E+L+ VDL + +L
Sbjct: 88 RRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARAS--EMLRAVDLDDSVL 145
Query: 565 DRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS-----------AVTTDM 613
D+ PP +LS G+ QR+ +AR +PK ILDE S + +
Sbjct: 146 DKRPP--------QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKL 197
Query: 614 EERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDG 649
+++F GT+C+ I+H LV F V+ +D
Sbjct: 198 QQQF-------GTACLFITHDLRLVERFCQRVMVMDN 227
|
Length = 268 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 4e-07
Identities = 50/217 (23%), Positives = 86/217 (39%), Gaps = 56/217 (25%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGC---- 1172
++ +I G+ + + GP+G GK+++ R++ G SG + +D E +
Sbjct: 22 DDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEIL-----LDGEDITDVPPEK 76
Query: 1173 -GIFYVPQRPYTCLG--TLRDQIIYPL------SREEAELRALKLHGKGEKLVDTTNILD 1223
I V Q Y T+ + + + L + E + R +
Sbjct: 77 RPIGMVFQS-YALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEA--------------- 120
Query: 1224 SYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECT 1283
LE V L +R LS G+QQR+ +AR +PK +LDE
Sbjct: 121 ------LELVGLEGFADR----------KPHQLSGGQQQRVALARALVPEPKVLLLDEPL 164
Query: 1284 NA----TSVDVEEQLYRLAKDMGIT--FVTSSQRPAL 1314
+A + ++L L +++GIT +VT Q AL
Sbjct: 165 SALDAKLREQMRKELKELQRELGITFVYVTHDQEEAL 201
|
Length = 352 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 4e-07
Identities = 52/212 (24%), Positives = 93/212 (43%), Gaps = 48/212 (22%)
Query: 1108 ITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE 1167
+ P +K + + ++ PG + V G NG+GKS++ R++ G+ + + E
Sbjct: 13 VVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV-----------DKEFNGE 61
Query: 1168 A--GSGCGIFYVPQRPY-----TCLGTLR-------------DQIIYPLSREEAELRAL- 1206
A G + Y+PQ P T + ++I + +A++ AL
Sbjct: 62 ARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALL 121
Query: 1207 KLHGKGEKLVDTTNI--LDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRL 1264
+ ++++D + LD L+ ++ +R WDA++ LS GE++R+
Sbjct: 122 AEQAELQEIIDAADAWDLDRKLEIAMDALRCP--------PWDADVT---KLSGGERRRV 170
Query: 1265 GMARLFFHKPKFGILDECTN---ATSVDVEEQ 1293
+ RL KP +LDE TN A SV EQ
Sbjct: 171 ALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQ 202
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 4e-07
Identities = 54/211 (25%), Positives = 84/211 (39%), Gaps = 42/211 (19%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI-------------- 502
G V +++L+V PG + + GPNG+GK++LF ++ G + SG +
Sbjct: 16 GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHR 75
Query: 503 -AKPGVG-SDLNKEIF---------YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGM 551
A+ G+ + +F V L L P +E E
Sbjct: 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARL---GLSGLLGRPRARKEEREARERAR- 131
Query: 552 VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTT 611
ELL+ V L L DR LS G+Q+RL +AR +PK +LDE + +
Sbjct: 132 -ELLEFVGLGELADRP--------AGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNP 182
Query: 612 DMEERFCAKVRA----MGTSCITISHRPALV 638
+ E +R G + + I H LV
Sbjct: 183 EETEELAELIRELRDRGGVTILLIEHDMKLV 213
|
Length = 250 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 4e-07
Identities = 54/176 (30%), Positives = 77/176 (43%), Gaps = 38/176 (21%)
Query: 456 TGNVL-VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI-AKPGVGS-DL- 511
TG VL V N +L +E G ++ G +GSGKS+L R + GL P+ G + K G GS D+
Sbjct: 34 TGLVLGVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVA 93
Query: 512 -----------NKEIFYVPQR----PYTAVGTLRDQLIYPL----TSDQEVEPLTHGGMV 552
+ V Q+ P+ T+ + + + L E
Sbjct: 94 NCDAATLRRLRTHRVSMVFQQFALLPWR---TVEENVAFGLEMQGMPKAERRKRVD---- 146
Query: 553 ELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
E L+ V L DR P ELS G QQR+G+AR F + ++DE SA
Sbjct: 147 EQLELVGLAQWADRKP--------GELSGGMQQRVGLARAFATEAPILLMDEPFSA 194
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 5e-07
Identities = 54/194 (27%), Positives = 85/194 (43%), Gaps = 19/194 (9%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--DLNK----E 514
++N++L V G + ++GP+G+GKS+L + L + SG I G+ DL + E
Sbjct: 24 LKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPRE 83
Query: 515 IFYVPQRPYTAVGTLRDQLIYPLTSDQEV--EPLTHGGMVELLKNVDLEYLLDRYP-PEK 571
+ V ++ V + P S EV EPL G+ LL R PE+
Sbjct: 84 VLEVRRKTIGYVSQFLRVI--PRVSALEVVAEPLLERGVPREAARARARELLARLNIPER 141
Query: 572 EINWG---DELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER---FCAKVRAMG 625
W S GEQQR+ +AR F +LDE T+++ + A+ +A G
Sbjct: 142 L--WHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARG 199
Query: 626 TSCITISHRPALVA 639
+ I I H +
Sbjct: 200 AALIGIFHDEEVRE 213
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 5e-07
Identities = 63/240 (26%), Positives = 106/240 (44%), Gaps = 28/240 (11%)
Query: 425 IEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVEN-LTLKVEPGSNLLITGPNGSG 483
IE SP +A + F GV++ G LV ++ ++ P + I G GSG
Sbjct: 1291 IEPASPTSAAPHPV--QAGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSG 1348
Query: 484 KSSLFRVLGGLWPLVSGHIAKPG--VGS----DLNKEIFYVPQRPYTAVGTLRDQLIYPL 537
KS+L + + G I G +G+ +L ++ +PQ P GT+R
Sbjct: 1349 KSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVR------- 1401
Query: 538 TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKE------INWGDELSLGEQQRLGMAR 591
Q V+P E+ ++L L +R E E + G S+G++Q + MAR
Sbjct: 1402 ---QNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMAR 1458
Query: 592 LFYHK-PKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLD 648
K F ++DE T+ + ++ + A V + + ITI+HR VA +D ++ +D
Sbjct: 1459 ALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMD 1518
|
Length = 1560 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 5e-07
Identities = 56/210 (26%), Positives = 91/210 (43%), Gaps = 44/210 (20%)
Query: 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI--- 502
F GVK + +N+ LKV P S + G NG+GKS+L + L G++ SG I
Sbjct: 7 SFPGVKAL--------DNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQ 58
Query: 503 AKP------------GVGSDLNKEIFYVPQRPYTAVGTLRDQLI---YPLTSDQEVEPLT 547
K G+ S +++E+ V QR ++ D + YP +
Sbjct: 59 GKEIDFKSSKEALENGI-SMVHQELNLVLQR------SVMDNMWLGRYPTKG----MFVD 107
Query: 548 HGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
M K + E +D P K LS+ + Q + +A+ F + K I+DE TS
Sbjct: 108 QDKMYRDTKAIFDELDIDIDPRAKVAT----LSVSQMQMIEIAKAFSYNAKIVIMDEPTS 163
Query: 608 AVT-TDMEERF--CAKVRAMGTSCITISHR 634
++T ++ F K++ G + ISH+
Sbjct: 164 SLTEKEVNHLFTIIRKLKERGCGIVYISHK 193
|
Length = 491 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 5e-07
Identities = 52/172 (30%), Positives = 74/172 (43%), Gaps = 31/172 (18%)
Query: 456 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV------GS 509
G L++ ++L + PG L I GPNG+GKS+L + L G SG + GV
Sbjct: 12 AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPE 71
Query: 510 DLNKEIFYVPQR-----PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVE-LLKNVDLEYL 563
+L + +PQ P+T ++ I P S + EP + L DL L
Sbjct: 72 ELARHRAVLPQNSSLAFPFTVQEVVQMGRI-PHRSGR--EPEEDERIAAQALAATDLSGL 128
Query: 564 LDR-YPPEKEINWGDELSLGEQQRLGMARLFYH------KPKFAILDECTSA 608
R Y LS GEQQR+ +AR+ ++ LDE TSA
Sbjct: 129 AGRDYR---------TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSA 171
|
Length = 259 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 5e-07
Identities = 52/178 (29%), Positives = 80/178 (44%), Gaps = 28/178 (15%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
+E +K P G ++ + K E G + + GPNG+GKS+LF G+ SG +
Sbjct: 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLI 61
Query: 505 PGVGSDL-NKEIFYVPQRPYTAVGTL----RDQLIYPLTSDQEVE--PLTHG-------- 549
G K + V + VG + DQL P T +++V PL G
Sbjct: 62 KGEPIKYDKKSLLEVRKT----VGIVFQNPDDQLFAP-TVEEDVAFGPLNLGLSKEEVEK 116
Query: 550 GMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
+ E LK V +E + PP LS G+++R+ +A + KP+ +LDE TS
Sbjct: 117 RVKEALKAVGMEG-FENKPPH-------HLSGGQKKRVAIAGILAMKPEIIVLDEPTS 166
|
Length = 275 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 6e-07
Identities = 49/210 (23%), Positives = 80/210 (38%), Gaps = 60/210 (28%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGI 1174
++ + G+ + + GP+G GKS++ R++ GL SG + +D E G G
Sbjct: 21 EDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVL-----VDGEPVTGPGPDR 75
Query: 1175 FYVPQRPYTCLG--TLRDQIIYPL-----SREEAELRALKLHGKGEKLVDTTNILDSYLK 1227
YV Q+ L T+ D + L + EA RA + L+
Sbjct: 76 GYVFQQ-DALLPWLTVLDNVALGLELQGVPKAEARERA-----------------EELLE 117
Query: 1228 TI-LEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPK-------FGIL 1279
+ L G +Y + LS G +QR+ +AR P F L
Sbjct: 118 LVGLSGFENAYPHQ---------------LSGGMRQRVALARALAVDPDVLLLDEPFSAL 162
Query: 1280 DECTNATSVDVEEQLYRLAKDMGIT--FVT 1307
D T ++E+L + ++ G T VT
Sbjct: 163 DALTRE---QLQEELLDIWRETGKTVLLVT 189
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 7e-07
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 29/160 (18%)
Query: 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV----GSDLNK 513
N +++NL L ++ G+ + + GP+G GK+++ R++ GL G I G S +
Sbjct: 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQR 78
Query: 514 EIFYVPQR----PYTAVGT-----LRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLL 564
+I V Q P+ ++G L+ + Q V+ E L+ VDL
Sbjct: 79 DICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVK--------EALELVDLAGFE 130
Query: 565 DRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
DRY D++S G+QQR+ +AR KPK + DE
Sbjct: 131 DRYV--------DQISGGQQQRVALARALILKPKVLLFDE 162
|
Length = 351 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 7e-07
Identities = 44/213 (20%), Positives = 87/213 (40%), Gaps = 34/213 (15%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
N ++++L+L++E G L + G +G GK++L R + G +G + + ++++
Sbjct: 17 ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK-AAGLTGRIAIA---DRDLT 72
Query: 517 YVPQRPYT-AVG------------TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYL 563
+ P P+ + + D + + L + + + + + LK V L
Sbjct: 73 HAP--PHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDA 130
Query: 564 LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA 623
P + LS G QQR+ +AR +P +LDE SA+ ++ ++ A
Sbjct: 131 AAHLPAQ--------LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAA 182
Query: 624 MGTS-------CITISHRPALVAFHDVVLSLDG 649
+ C+T AL + DG
Sbjct: 183 LHEELPELTILCVTHDQDDALTLADKAGIMKDG 215
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 7e-07
Identities = 49/193 (25%), Positives = 82/193 (42%), Gaps = 38/193 (19%)
Query: 476 ITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG-VGSDLNKEIFYVPQRPYTAVG------- 527
I G +GSGK++L R++ GL G I G D K IF P++ +G
Sbjct: 28 IFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEK--RRIGYVFQEAR 85
Query: 528 -----TLRDQLIYPLT-SDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSL 581
++R L Y + + ++ ++ELL + +LL R P LS
Sbjct: 86 LFPHLSVRGNLRYGMKRARPSERRISFERVIELL---GIGHLLGRLP--------GRLSG 134
Query: 582 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER-----FCAKVRA-MGTSCITISHRP 635
GE+QR+ + R P+ ++DE +A+ D + + ++ A G + +SH
Sbjct: 135 GEKQRVAIGRALLSSPRLLLMDEPLAAL--DDPRKYEILPYLERLHAEFGIPILYVSHSL 192
Query: 636 ---ALVAFHDVVL 645
+A VVL
Sbjct: 193 QEVLRLADRVVVL 205
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 9e-07
Identities = 51/208 (24%), Positives = 82/208 (39%), Gaps = 50/208 (24%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176
+ + EI G+ + + GP+GSGKS++ +L G L KP+ G
Sbjct: 22 KDVNLEIEAGEFVAIVGPSGSGKSTLLNLL--------GGLDKPTS----------GEVL 63
Query: 1177 VPQRPYTCLGTLRDQIIYPLSREEAELRALKL------HGKGEKLVDTTNILDS-YLKTI 1229
+ + T L +E A+LR K+ L+ +L++ L +
Sbjct: 64 INGKDLTKLS----------EKELAKLRRKKIGFVFQNFN----LLPDLTVLENVELPLL 109
Query: 1230 LEGV-------RLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDEC 1282
+ G LLE + LS G+QQR+ +AR + PK + DE
Sbjct: 110 IAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEP 169
Query: 1283 TNA----TSVDVEEQLYRLAKDMGITFV 1306
T T+ +V E L L K+ G T +
Sbjct: 170 TGNLDSKTAKEVLELLRELNKERGKTII 197
|
Length = 226 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 9e-07
Identities = 48/203 (23%), Positives = 80/203 (39%), Gaps = 48/203 (23%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT--------KPSQHIDEEA 1168
R ++ E+ G+ + + G NG+GK+++ + + GL SG + P
Sbjct: 20 RGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHER---- 75
Query: 1169 GSGCGIFYVPQRPYTCLGTLRDQIIYPLSREE-AELRALKLHGKGEKLVDTTNILD--SY 1225
+ GI YVP+ +I L+ EE L A K + D + +
Sbjct: 76 -ARLGIAYVPE---------GRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPR 125
Query: 1226 LKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTN- 1284
LK + + LS GEQQ L +AR +PK +LDE +
Sbjct: 126 LKERRN--QRAGT-----------------LSGGEQQMLAIARALMSRPKLLLLDEPSEG 166
Query: 1285 -ATSV--DVEEQLYRLAKDMGIT 1304
A + ++ E + L K+ G+T
Sbjct: 167 LAPKIVEEIFEAIKELRKEGGMT 189
|
Length = 237 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 9e-07
Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 33/180 (18%)
Query: 445 IEFSGVKV-VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
I+ V + N ++N++ ++ G + I G NGSGKS++ ++L GL SG I
Sbjct: 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK 67
Query: 504 KPGVGSDLNKE-----------IFYVPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGM 551
G+ ++KE IF P + +G T+ D + + L E + + M
Sbjct: 68 IDGI--TISKENLKEIRKKIGIIFQNPDNQF--IGATVEDDIAFGL----ENKKVPPKKM 119
Query: 552 ----VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
+L K V +E LD+ P LS G++QR+ +A + P+ I DE TS
Sbjct: 120 KDIIDDLAKKVGMEDYLDKEP--------QNLSGGQKQRVAIASVLALNPEIIIFDESTS 171
|
Length = 271 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 1e-06
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 1252 WEDILSLGEQQRLGMARLFFHKPKFGILDECT----NATSVDVEEQLYRLAKDMGITFVT 1307
E+ILS G++QR+ +AR P ILDE T T + E L LAK + +
Sbjct: 93 RENILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIA 152
Query: 1308 SSQRPALI 1315
R + I
Sbjct: 153 --HRLSTI 158
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 1e-06
Identities = 58/211 (27%), Positives = 88/211 (41%), Gaps = 36/211 (17%)
Query: 1110 PSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAG 1169
P +L + L+ I PGK++ + G +G GKS+V +L + SG + I +
Sbjct: 14 PDVPIL-KGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNL 72
Query: 1170 SGC--GIFYVPQRPYTCLGTLRDQIIY---PLSREEAELRALKLHGKGEKLVDTTNILDS 1224
I V Q P GT+ + I Y + EE E A K NI
Sbjct: 73 RWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVE-EAAKK----------ANI-HD 120
Query: 1225 YLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTN 1284
++ ++ +G Y VG + LS G++QR+ +AR PK +LDE T+
Sbjct: 121 FIMSLPDG----Y---DTLVGERGSQ-----LSGGQKQRIAIARALLRNPKILLLDEATS 168
Query: 1285 ATSVDVE----EQLYRLAKDMGITFVTSSQR 1311
A + E E L R K G T + + R
Sbjct: 169 ALDAESEKLVQEALDRAMK--GRTTIVIAHR 197
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 1e-06
Identities = 60/222 (27%), Positives = 91/222 (40%), Gaps = 37/222 (16%)
Query: 1068 ELEELLDA--AQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVP 1125
L L+ A P E +S +I L+I++P K LA L F +
Sbjct: 323 SLVTFLETPLAHPQQGEKELASNDPV-------TIEAEDLEILSPDGKTLAGPLNFTLPA 375
Query: 1126 GKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCGIFYVPQRPY 1182
G+ + + GP+G+GK+S+ L G P GSL + +D E+ + +V Q P
Sbjct: 376 GQRIALVGPSGAGKTSLLNALLGFLP-YQGSLKINGIELRELDPESWRKH-LSWVGQNPQ 433
Query: 1183 TCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLERE 1242
GTLRD ++ L +A D L+ LE +S L
Sbjct: 434 LPHGTLRDNVL--LGNPDAS--------------------DEQLQQALENAWVSEFLPLL 471
Query: 1243 EVGWDANLNWEDI-LSLGEQQRLGMARLFFHKPKFGILDECT 1283
G D + + LS+G+ QRL +AR + +LDE T
Sbjct: 472 PQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPT 513
|
Length = 588 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 1e-06
Identities = 56/234 (23%), Positives = 94/234 (40%), Gaps = 67/234 (28%)
Query: 1113 KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGC 1172
++L L+F + G+ + + GPNG+GK+S+ R+L G L +P +AG
Sbjct: 14 RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAG--------LARP------DAGE-- 57
Query: 1173 GIFYVPQRPYTCLGTLRDQI------------IYP-LSREEAELR-ALKLHGKGEKLVDT 1218
+ + + + RD+ I L+ E LR +LHG D
Sbjct: 58 -VLWQGE----PIRRQRDEYHQDLLYLGHQPGIKTELTALE-NLRFYQRLHG----PGDD 107
Query: 1219 TNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI----LSLGEQQRLGMARLFFHKP 1274
+ + L V L+ +ED+ LS G+Q+R+ +ARL+ +
Sbjct: 108 EALWE-----ALAQVGLA--------------GFEDVPVRQLSAGQQRRVALARLWLTRA 148
Query: 1275 KFGILDECTNATSVDVEEQLYRL----AKDMGITFVTSSQRPALIPFHSLELRL 1324
ILDE A +L L A+ G+ +T+ Q + +LRL
Sbjct: 149 PLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202
|
Length = 204 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 23/166 (13%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP------LVSGHIAKPGVGSDLNKE 514
V+ ++ + G L I G NGSGKS+L ++L G+ L++ H G S +K
Sbjct: 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKR 88
Query: 515 IFYVPQRPYTA------VGTLRDQLIYPLTSDQEVEPLTHGGMV-ELLKNVDLEYLLDRY 567
I + Q P T+ +G + D +PL + ++EP + E L+ V L
Sbjct: 89 IRMIFQDPNTSLNPRLRIGQILD---FPLRLNTDLEPEQRRKQIFETLRMVGL------L 139
Query: 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 613
P L+ G++QR+ +AR +PK I DE +++ M
Sbjct: 140 PDHANYY-PHMLAPGQKQRVALARALILRPKIIIADEALASLDMSM 184
|
Length = 267 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 1e-06
Identities = 50/187 (26%), Positives = 87/187 (46%), Gaps = 28/187 (14%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA--KPGVGSDL---NKE 514
L++ ++ + G L + G NG+GK++L +++ GL G I + + DL K+
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQ 75
Query: 515 IFYVPQR----PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPE 570
+ +V R PY TLR+ +Y + G+ EL + LE+L+D YP
Sbjct: 76 LCFVGHRSGINPYL---TLRENCLYDIHFSP-----GAVGITELCRLFSLEHLID-YP-- 124
Query: 571 KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV---RAMGTS 627
LS G+++++ + RL+ K K +LDE A+ K+ RA G +
Sbjct: 125 -----CGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGA 179
Query: 628 CITISHR 634
+ SH+
Sbjct: 180 VLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 1e-06
Identities = 47/155 (30%), Positives = 68/155 (43%), Gaps = 26/155 (16%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFR-VLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521
N+ L V GS + I G G GK+SL +LG L P + G + YVPQ
Sbjct: 635 NINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG-------TVAYVPQV 687
Query: 522 PYTAVGTLRDQLIYPLTSDQE-------VEPLTHGGMVELLKNVDLEYLLDRYPPEKEIN 574
+ T+RD +++ D E V L H ++LL DL + +R
Sbjct: 688 SWIFNATVRDNILFGSPFDPERYERAIDVTALQHD--LDLLPGGDLTEIGER-------- 737
Query: 575 WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
G +S G++QR+ MAR Y I D+ SA+
Sbjct: 738 -GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSAL 771
|
Length = 1622 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 30/161 (18%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-----DLNKEI 515
++ ++ + + G + GPNG+GKS+ +++ G P SG + G ++ + I
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNI 77
Query: 516 FYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPL----THGGMVELLKNVDLEYLLDR--YP 568
Y+P+ PL D V E L GM L +E +++
Sbjct: 78 GYLPEHN-------------PLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR 124
Query: 569 PE--KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
PE K+I +LS G +QR+G+A+ H PK ILDE T+
Sbjct: 125 PEQHKKIG---QLSKGYRQRVGLAQALIHDPKVLILDEPTT 162
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 1253 EDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDM---GITFVTSS 1309
E+ILS G++QRLG+AR + P+ +LDE + V+ E L + + G T + +
Sbjct: 94 ENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIA 153
Query: 1310 QRPALI 1315
RP +
Sbjct: 154 HRPETL 159
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 51/188 (27%), Positives = 77/188 (40%), Gaps = 38/188 (20%)
Query: 1098 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS- 1156
++ISFS + L+ ++ G+ + +TG NG+GK+++ ++L GL SGS
Sbjct: 3 ENISFS-----YKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSI 57
Query: 1157 -LTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKL 1215
L E S I YV Q L T D + REE L +L E+
Sbjct: 58 LLNGKPIKAKERRKS---IGYVMQDVDYQLFT--DSV-----REELLLGLKELDAGNEQA 107
Query: 1216 VDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPK 1275
+T+L+ + L L ER + LS G++QRL +A
Sbjct: 108 -----------ETVLKDLDLYALKERHPL----------SLSGGQKQRLAIAAALLSGKD 146
Query: 1276 FGILDECT 1283
I DE T
Sbjct: 147 LLIFDEPT 154
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-06
Identities = 46/195 (23%), Positives = 77/195 (39%), Gaps = 38/195 (19%)
Query: 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTK 1159
+ F + +LL + L+F I G + + GPNG+GKS++ ++L G +SG++
Sbjct: 322 LEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKV 381
Query: 1160 PSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTT 1219
G I Y Q RD++ P EL
Sbjct: 382 ---------GETVKIGYFDQH--------RDELD-PDKTVLEELSEGF-----------P 412
Query: 1220 NILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGIL 1279
+ + ++ L + + + VG +LS GE+ RL +A+L P +L
Sbjct: 413 DGDEQEVRAYLGRFGFTGEDQEKPVG---------VLSGGEKARLLLAKLLLQPPNLLLL 463
Query: 1280 DECTNATSVDVEEQL 1294
DE TN ++ E L
Sbjct: 464 DEPTNHLDIESLEAL 478
|
Length = 530 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 2e-06
Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 23/166 (13%)
Query: 454 TPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS--GHIAKPGVGSD- 510
T G ++++L+ VE G + + G GSGKS+L L L L+S G I GV +
Sbjct: 1228 TEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTL---LSALLRLLSTEGEIQIDGVSWNS 1284
Query: 511 -----LNKEIFYVPQRPYTAVGTLRDQL-IYPLTSDQEVEPLTHGGMVELLKNVDLEYLL 564
K +PQ+ + GT R L Y SD+E+ + + V L+ ++
Sbjct: 1285 VTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVA--------EEVGLKSVI 1336
Query: 565 DRYPPEKE---INWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
+++P + + ++ G LS G +Q + +AR K K +LDE ++
Sbjct: 1337 EQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSA 1382
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 2e-06
Identities = 63/240 (26%), Positives = 105/240 (43%), Gaps = 43/240 (17%)
Query: 379 LRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISREL---SIEDKSPQRNGS 435
LR+ +++ + S+ S+S +RL + + EL SIE + + G
Sbjct: 586 LRFPLNILPMVISSIVQASVSLKRL-----------RIFLSHEELEPDSIERR-TIKPGE 633
Query: 436 RNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW 495
N + N F+ + + PT N +T + G+ + + G G GKSSL L
Sbjct: 634 GNSITVHN-ATFTWARDLPPTLN----GITFSIPEGALVAVVGQVGCGKSSLLSALLAEM 688
Query: 496 PLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVE-- 553
V GH+ G + YVPQ+ + +LR+ +++ + + + ++E
Sbjct: 689 DKVEGHVHMKG-------SVAYVPQQAWIQNDSLRENILF----GKALNEKYYQQVLEAC 737
Query: 554 -LLKNVDLEYLL--DRYP-PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
LL DLE L DR EK +N LS G++QR+ +AR Y + D+ SAV
Sbjct: 738 ALLP--DLEILPSGDRTEIGEKGVN----LSGGQKQRVSLARAVYSNADIYLFDDPLSAV 791
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 50/203 (24%), Positives = 80/203 (39%), Gaps = 34/203 (16%)
Query: 1125 PGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTC 1184
PG + GPNGSGKS++ R+L G +G++ +G + + +R
Sbjct: 26 PGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDL----------AGVDLHGLSRRARAR 75
Query: 1185 LGTLRDQII---YPLSREEAEL--RALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLL 1239
L +Q PL+ + R ++D L LS+L
Sbjct: 76 RVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALAR----TELSHLA 131
Query: 1240 EREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAK 1299
+R+ LS GE+QR+ +AR +PK +LDE TN V + + L +
Sbjct: 132 DRDM----------STLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVR 181
Query: 1300 DMGITFVTSSQRPALIPFHSLEL 1322
++ T VT + H L L
Sbjct: 182 ELAATGVTV-----VAALHDLNL 199
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 43/170 (25%), Positives = 67/170 (39%), Gaps = 42/170 (24%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG--HIAKPGVGSDLNKE 514
V ++ +V G + GPNG+GK++ ++L L SG +A G D+ +E
Sbjct: 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVA----GHDVVRE 67
Query: 515 -------IFYVPQRPYTAVGTLRDQL-----------IYPLTSDQEVEPLTHGGMVELLK 556
I V Q ++ D+L +Y + + E + ELL
Sbjct: 68 PREVRRRIGIVFQDL-----SVDDELTGWENLYIHARLYGVPGAERRERID-----ELLD 117
Query: 557 NVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606
V L DR S G ++RL +AR H+P+ LDE T
Sbjct: 118 FVGLLEAADRLV--------KTYSGGMRRRLEIARSLVHRPEVLFLDEPT 159
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 28/186 (15%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---------AKP-- 505
G ++ + L+V+PG + I GP+GSGK++L R + L +G I A+
Sbjct: 15 GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLS 74
Query: 506 ---GVGSDLNKEIFYVPQR----PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV 558
G+ L + + +V Q P+ V L + + P+ E + ELL V
Sbjct: 75 QQKGLIRQLRQHVGFVFQNFNLFPHRTV--LENIIEGPVIVKGEPKEEATARARELLAKV 132
Query: 559 DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFC 618
L YP LS G+QQR+ +AR +P+ + DE TSA+ ++
Sbjct: 133 GLAGKETSYP--------RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVL 184
Query: 619 AKVRAM 624
+R +
Sbjct: 185 NTIRQL 190
|
Length = 250 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 19/161 (11%)
Query: 454 TPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSD--- 510
T GN ++EN++ + PG + + G GSGKS+L L G I GV +
Sbjct: 13 TEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVP 71
Query: 511 ---LNKEIFYVPQRPYTAVGTLRDQL-IYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 566
K +PQ+ + GT R L Y SD+E+ + + V L+ ++++
Sbjct: 72 LQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVA--------EEVGLKSVIEQ 123
Query: 567 YPPEKE---INWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
+P + + ++ G LS G +Q + +AR K K +LDE
Sbjct: 124 FPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDE 164
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-06
Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 47/211 (22%)
Query: 447 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG 506
F GVK + L V PG + + G NG+GKS++ +VL G++ +G I
Sbjct: 14 FPGVKAL--------SGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILY-- 63
Query: 507 VGSDLNKEI-FYVPQRPYTA-VGTLRDQL--IYPLTSDQEV----EPLTHGGMVE----- 553
L KE+ F P+ A +G + +L I LT + + E + G ++
Sbjct: 64 ----LGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMY 119
Query: 554 -----LLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
LL ++L R+ +K + ELS+GEQQ + +A++ + K I+DE T A
Sbjct: 120 AEADKLLARLNL-----RFSSDKLVG---ELSIGEQQMVEIAKVLSFESKVIIMDEPTDA 171
Query: 609 VT-TDMEERFCAKV----RAMGTSCITISHR 634
+T T+ E F +V ++ G + ISHR
Sbjct: 172 LTDTETESLF--RVIRELKSQGRGIVYISHR 200
|
Length = 501 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 3e-06
Identities = 55/197 (27%), Positives = 90/197 (45%), Gaps = 20/197 (10%)
Query: 464 LTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI-------AKPGVGSDLNKEIF 516
L+ ++ P + I G G+GKSS+ L + L G I +K G+ DL K +
Sbjct: 1258 LSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGL-MDLRKVLG 1316
Query: 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPP--EKEIN 574
+PQ P GT+R L P + + + E L+ L+ ++ R + E++
Sbjct: 1317 IIPQAPVLFSGTVRFNL-DPFNEHNDAD------LWESLERAHLKDVIRRNSLGLDAEVS 1369
Query: 575 WGDE-LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSC--ITI 631
E S+G++Q L +AR + K +LDE T+AV + +R SC + I
Sbjct: 1370 EAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLII 1429
Query: 632 SHRPALVAFHDVVLSLD 648
+HR + D +L LD
Sbjct: 1430 AHRLNTIIDCDRILVLD 1446
|
Length = 1622 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 3e-06
Identities = 45/167 (26%), Positives = 73/167 (43%), Gaps = 36/167 (21%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH-------IAKPGVGSDLNK 513
+ N+ S + + GPNG+GKS+LFR G+ SG I K + ++ K
Sbjct: 20 LNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENI-REVRK 78
Query: 514 EIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-----------EPLTHGGMVELLKNVDLEY 562
+ V Q P D I+ T +Q++ E + H + L + LE
Sbjct: 79 FVGLVFQNP--------DDQIFSPTVEQDIAFGPINLGLDEETVAH-RVSSALHMLGLEE 129
Query: 563 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
L DR P LS GE++R+ +A + +P+ +LDE T+ +
Sbjct: 130 LRDRVP--------HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGL 168
|
Length = 277 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 3e-06
Identities = 55/206 (26%), Positives = 89/206 (43%), Gaps = 38/206 (18%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLN-KEIFYVP 519
V+ ++ +E G L + G +GSGKS + GL P S A P + +++
Sbjct: 26 VKGISFDIEAGETLALVGESGSGKSVTALSILGLLP--SPAAAHPSGSILFDGEDLLAAS 83
Query: 520 QRPYTAVGTLRDQLIY--PLTS--------DQEVEPLT-HGGM---------VELLKNVD 559
+R V + +I+ P+TS Q E L H G+ +ELL+ V
Sbjct: 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVG 143
Query: 560 L---EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA--VTTDME 614
+ E LD YP ELS G++QR+ +A ++P I DE T+A VT +
Sbjct: 144 IPEPEKRLDAYP--------HELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQ 195
Query: 615 --ERFCAKVRAMGTSCITISHRPALV 638
+ +G + + I+H +V
Sbjct: 196 ILDLLKELQAELGMAILFITHDLGIV 221
|
Length = 534 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 3e-06
Identities = 54/206 (26%), Positives = 80/206 (38%), Gaps = 46/206 (22%)
Query: 462 ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGG--LWPLVSGHIAKPGVGSDLN------- 512
+ + L V+ G I GPNGSGKS+L + + G + + SG I G DL
Sbjct: 17 KGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFK--GQDLLELEPDER 74
Query: 513 --KEIFYVPQRP------------YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV 558
+F Q P +A+ R + L + L +
Sbjct: 75 ARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKL----LKAKLALL 130
Query: 559 DL-EYLLDRYPPEKEINWGDELSLGEQQR---LGMARLFYHKPKFAILDECTSAVTTDME 614
+ E L+R +N G S GE++R L MA L +PK AILDE S + D
Sbjct: 131 GMDEEFLNRS-----VNEG--FSGGEKKRNEILQMALL---EPKLAILDEIDSGLDIDAL 180
Query: 615 ERFCA---KVRAMGTSCITISHRPAL 637
+ ++R S + I+H L
Sbjct: 181 KIVAEGINRLREPDRSFLIITHYQRL 206
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 47/209 (22%), Positives = 79/209 (37%), Gaps = 28/209 (13%)
Query: 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT 1158
I L ++LL ++ ++ PG+ L + GPNG+GKS++ + L G SG +T
Sbjct: 1 MIRAENLSYSLAGRRLLD-GVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVT 59
Query: 1159 KPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDT 1218
++ + L +P + +E H G + +
Sbjct: 60 LNGVPLNSWPPEELARHRAVLPQNSSLA-------FPFTVQEVVQMGRIPHRSGREPEED 112
Query: 1219 TNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFH------ 1272
I L LS L R+ LS GEQQR+ +AR+
Sbjct: 113 ERIAAQA----LAATDLSGLAGRD----------YRTLSGGEQQRVQLARVLAQLWPPVP 158
Query: 1273 KPKFGILDECTNATSVDVEEQLYRLAKDM 1301
++ LDE T+A + + RLA+ +
Sbjct: 159 SGRWLFLDEPTSALDIAHQHHTLRLARQL 187
|
Length = 259 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 4e-06
Identities = 54/202 (26%), Positives = 86/202 (42%), Gaps = 42/202 (20%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
I + V V G+ + + + V GS + G NGSGKS+LF+ L G L SG I+
Sbjct: 7 IVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISI 66
Query: 505 PG--VGSDLNKE-IFYVPQRP------------------YTAVGTLRDQLIYPLTSDQEV 543
G L K + YVPQ Y +G LR D+++
Sbjct: 67 LGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLR----RAKKRDRQI 122
Query: 544 EPLTHGGMVELLKNVD-LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAIL 602
+ L VD +E+ R+ ++I ELS G+++R+ +AR + + +L
Sbjct: 123 -------VTAALARVDMVEF---RH---RQIG---ELSGGQKKRVFLARAIAQQGQVILL 166
Query: 603 DECTSAVTTDMEERFCAKVRAM 624
DE + V E R + +R +
Sbjct: 167 DEPFTGVDVKTEARIISLLREL 188
|
Length = 272 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 4e-06
Identities = 50/173 (28%), Positives = 75/173 (43%), Gaps = 40/173 (23%)
Query: 457 GNVLVE---NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNK 513
G+V + N++ + G + I G +GSGKS+L +LGGL SG + G ++K
Sbjct: 18 GSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFN--GQPMSK 75
Query: 514 EIFYVPQRPYTAVGTLRDQ---LIYP-------LTSDQEVE-PLTHGGM---------VE 553
A LR+Q IY T+ + V PL G +E
Sbjct: 76 -------LSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALE 128
Query: 554 LLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606
+L V LE+ + P ELS GE+QR+ +AR + P+ + DE T
Sbjct: 129 MLAAVGLEHRANHRP--------SELSGGERQRVAIARALVNNPRLVLADEPT 173
|
Length = 233 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 4e-06
Identities = 56/213 (26%), Positives = 88/213 (41%), Gaps = 47/213 (22%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDE----EAGSGCGI 1174
++F I GK++ + G +G+GKS++ R+L + V SGS+T Q I + GI
Sbjct: 282 ISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGI 341
Query: 1175 FYVPQRPYTCLGTLRDQIIYP---LSREE--AELRALKLHGKGEKLVD--TTNILDSYLK 1227
VPQ T+ I Y + EE A A ++H + L + T + + LK
Sbjct: 342 --VPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLK 399
Query: 1228 TILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATS 1287
LS GE+QR+ +AR P ILDE T+A
Sbjct: 400 ----------------------------LSGGEKQRVAIARTILKNPPILILDEATSALD 431
Query: 1288 VDVEEQLYRLAKDMGITFVTSSQRPALIPFHSL 1320
E+ + +++ S+ R L+ H L
Sbjct: 432 THTEQAIQAALREV------SAGRTTLVIAHRL 458
|
Length = 497 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 5e-06
Identities = 54/205 (26%), Positives = 82/205 (40%), Gaps = 41/205 (20%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176
++F + PG+ + GPNG+GK++ R+L G L +P G F
Sbjct: 22 DGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAG--------LLEPDAGFATVDG-----FD 68
Query: 1177 VPQRPYTC---LGTLRDQI-IYP-LS-REEAELRALKLHG-KGEKLVDTTNILDSYLKTI 1229
V + P LG + D +Y L+ RE E A L+G KG++L L L
Sbjct: 69 VVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFA-GLYGLKGDELTARLEELADRL--- 124
Query: 1230 LEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVD 1289
+ LL+R G S G +Q++ +AR H P +LDE T V
Sbjct: 125 ----GMEELLDRRVGG----------FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVM 170
Query: 1290 VEEQLY---RLAKDMGITFVTSSQR 1311
L R + +G + S+
Sbjct: 171 ATRALREFIRQLRALGKCILFSTHI 195
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 6e-06
Identities = 44/220 (20%), Positives = 90/220 (40%), Gaps = 43/220 (19%)
Query: 1110 PSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSL--------TKPS 1161
P ++ ++ I PG+ + + G +GSGKS++ ++++ + +G +
Sbjct: 12 PDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADP 71
Query: 1162 QHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNI 1221
+ + G V Q ++RD I L+ + E++++ +
Sbjct: 72 AWLRRQVG------VVLQENVLFNRSIRDNI--ALADPGMSM---------ERVIEAAKL 114
Query: 1222 LDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI-LSLGEQQRLGMARLFFHKPKFGILD 1280
++ ++ E E G+D + + LS G++QR+ +AR H P+ I D
Sbjct: 115 AGAH----------DFISELPE-GYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFD 163
Query: 1281 ECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSL 1320
E T+A + E + R D+ + R +I H L
Sbjct: 164 EATSALDYESEHAIMRNMHDI------CAGRTVIIIAHRL 197
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 6e-06
Identities = 60/232 (25%), Positives = 101/232 (43%), Gaps = 39/232 (16%)
Query: 1097 QDSISFSKLDIITPSQKLLARQLTFEIVPGKSLL-VTGPNGSGKSSVFRVLRGLWPVVSG 1155
+D + S+L + + +L + +T +I P S+ + GP+GSGKS++ +VL L +
Sbjct: 8 EDVFNISRLYLYINDKAIL-KDITIKI-PNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDS 65
Query: 1156 SLT---------KPSQHIDE-EAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRA 1205
+ K ID + G+ + P+ L ++ D I YPL
Sbjct: 66 KIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHL-SIYDNIAYPL--------- 115
Query: 1206 LKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLG 1265
K HG EK +K I+E L +E +D + LS G+QQRL
Sbjct: 116 -KSHGIKEK---------REIKKIVEECLRKVGLWKEV--YDRLNSPASQLSGGQQQRLT 163
Query: 1266 MARLFFHKPKFGILDECTN----ATSVDVEEQLYRLAKDMGITFVTSSQRPA 1313
+AR KPK ++DE T+ S +E+ + L ++ I V+ + +
Sbjct: 164 IARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQV 215
|
Length = 257 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 6e-06
Identities = 52/190 (27%), Positives = 90/190 (47%), Gaps = 33/190 (17%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVP- 519
+++++L V+ G + + GP+G GK++L R++ GL +G I + G ++I +P
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGG------RDITRLPP 73
Query: 520 -QRPYTAVGTLRDQLIYP-LTSDQEVE-PLTHGGM---------VELLKNVDLEYLLDRY 567
+R Y V + ++P LT + L + GM ELL V L +Y
Sbjct: 74 QKRDYGIV--FQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKY 131
Query: 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--- 624
P +LS G+QQR+ +AR P +LDE SA+ + E ++R +
Sbjct: 132 P--------GQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRR 183
Query: 625 -GTSCITISH 633
G + I ++H
Sbjct: 184 LGVTTIMVTH 193
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 7e-06
Identities = 52/207 (25%), Positives = 93/207 (44%), Gaps = 41/207 (19%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCGIF 1175
++ +I G+ + GP+G GK+++ R++ G SG + K ++
Sbjct: 19 VSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLP---------- 68
Query: 1176 YVPQRPYTCLGTL-RDQIIYP-LSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGV 1233
+RP + T+ ++ ++P L+ E L+L + + + L+ V
Sbjct: 69 -PHKRP---VNTVFQNYALFPHLTVFENIAFGLRLKKLPK------AEIKERVAEALDLV 118
Query: 1234 RLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSV----D 1289
+L R+ LS G+QQR+ +AR ++PK +LDE A + D
Sbjct: 119 QLEGYANRKP----------SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKD 168
Query: 1290 VEEQLYRLAKDMGITF--VTSSQRPAL 1314
++ +L RL K++GITF VT Q AL
Sbjct: 169 MQLELKRLQKELGITFVFVTHDQEEAL 195
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 7e-06
Identities = 58/210 (27%), Positives = 87/210 (41%), Gaps = 51/210 (24%)
Query: 1121 FEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGC--GIF 1175
EI PG+ +++TGP+GSGK+++ ++ GL V GSL + E+ I
Sbjct: 26 LEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIG 85
Query: 1176 YVPQRP--YTCLGTLRDQIIYPL------SREEAELRALKLHGKGEKLVDTTNILDSYLK 1227
Y+ Q L T R + L S +EA RA + L+
Sbjct: 86 YIFQAHNLLGFL-TARQNVQMALELQPNLSYQEARERARAM-----------------LE 127
Query: 1228 TILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNA-- 1285
+ G L Y LS G++QR+ +AR H+PK + DE T A
Sbjct: 128 AVGLGDHLDYYPHN--------------LSGGQKQRVAIARALVHRPKLVLADEPTAALD 173
Query: 1286 --TSVDVEEQLYRLAKDMG--ITFVTSSQR 1311
+ DV E + +LA++ G I VT R
Sbjct: 174 SKSGRDVVELMQKLAREQGCTILIVTHDNR 203
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 7e-06
Identities = 44/197 (22%), Positives = 82/197 (41%), Gaps = 37/197 (18%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGG-LWP--LVSGHIAKPGVGSDLNK 513
G+ L+ N+ + G + + GP+G GKS+L + G L +G + +
Sbjct: 14 GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNE------Q 67
Query: 514 EIFYVP--QRPYTAVGTL-RDQLIYPLTSDQE-----VEPLTHG-----GMVELLKNVDL 560
+ +P QR +G L +D L++P S + + G L+ L
Sbjct: 68 RLDMLPAAQR---QIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGL 124
Query: 561 EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF--- 617
+ + P LS G++ R+ + R +PK +LDE S + + ++F
Sbjct: 125 DGAFHQDP--------ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQW 176
Query: 618 -CAKVRAMGTSCITISH 633
++VRA G + ++H
Sbjct: 177 VFSEVRAAGIPTVQVTH 193
|
Length = 213 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 8e-06
Identities = 40/183 (21%), Positives = 70/183 (38%), Gaps = 38/183 (20%)
Query: 1110 PSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAG 1169
P + R ++F I G+ + +TGP+G+GKS++ +++ G G + + G
Sbjct: 12 PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKG 71
Query: 1170 SGCGIFYVPQRPYTCLGTLRDQI---------IYPLSREEAELRALKLHGKGEKLVDTTN 1220
+ P+ LR QI + + E L++ GK
Sbjct: 72 R--------EIPF-----LRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPP------- 111
Query: 1221 ILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILD 1280
+ + E + L L + LS GEQQR+ +AR ++P + D
Sbjct: 112 --REIRRRVSEVLDLVGLKHKARA-------LPSQLSGGEQQRVAIARAIVNQPAVLLAD 162
Query: 1281 ECT 1283
E T
Sbjct: 163 EPT 165
|
Length = 223 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 8e-06
Identities = 52/191 (27%), Positives = 86/191 (45%), Gaps = 48/191 (25%)
Query: 451 KVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH-IAKPGVGS 509
KVV P +L ++++L PG+ + + G NG+GKS+L R++ G+ +G PG+
Sbjct: 12 KVVPPKKEIL-KDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGI-- 68
Query: 510 DLNKEIFYVPQRPY------------TAVGTLRDQL-----IYPLTS--DQEVEPL--TH 548
++ Y+PQ P V ++D L I + D +++ L
Sbjct: 69 ----KVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQ 124
Query: 549 GGMVELLKNVD-------LEYLLD--RYPPEKEINWGD----ELSLGEQQRLGMARLFYH 595
+ E++ D LE +D R PP D +LS GE++R+ + RL
Sbjct: 125 AELQEIIDAADAWDLDRKLEIAMDALRCPP------WDADVTKLSGGERRRVALCRLLLS 178
Query: 596 KPKFAILDECT 606
KP +LDE T
Sbjct: 179 KPDMLLLDEPT 189
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 9e-06
Identities = 55/194 (28%), Positives = 80/194 (41%), Gaps = 44/194 (22%)
Query: 445 IEFSGVKVVTPTGNVLVE---NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
IE + V P G + N++L + G + G +G+GKS+L R + L SG
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 502 IAKPGV------GSDLNKE------IF----YVPQRPYTAVGTLRDQLIYPL----TSDQ 541
+ G +L K IF + R T+ D + PL T
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSR------TVFDNVALPLELAGTPKA 115
Query: 542 EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601
E++ ELL+ V L DRYP + LS G++QR+ +AR PK +
Sbjct: 116 EIKARVT----ELLELVGLSDKADRYPAQ--------LSGGQKQRVAIARALASNPKVLL 163
Query: 602 LDECTSAV---TTD 612
DE TSA+ TT
Sbjct: 164 CDEATSALDPATTR 177
|
Length = 343 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 47/192 (24%), Positives = 74/192 (38%), Gaps = 65/192 (33%)
Query: 1120 TFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 1179
+F I G++L + G +G GKS++ R++ GL SG +
Sbjct: 33 SFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEIL--------------------- 71
Query: 1180 RPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLL 1239
+ I LS+EE R L+L LE V L
Sbjct: 72 --------FEGKDITKLSKEERRERVLEL---------------------LEKVGLP--- 99
Query: 1240 EREEVGWDANLNWEDI-LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQ----L 1294
+ L LS G++QR+G+AR PK + DE +A V V+ Q L
Sbjct: 100 -------EEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLL 152
Query: 1295 YRLAKDMGITFV 1306
L +++G+T++
Sbjct: 153 KDLQEELGLTYL 164
|
Length = 268 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 48/202 (23%), Positives = 78/202 (38%), Gaps = 23/202 (11%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176
+ L F G+ L + G NG+GKS++ L GL SG++ + +D S G+
Sbjct: 9 KGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY---SRKGLLE 65
Query: 1177 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS 1236
QR DQ+ ++ L L + ++ ++ L V S
Sbjct: 66 RRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAE-------VERRVREALTAVGAS 118
Query: 1237 YLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYR 1296
L ER LS GE++R+ +A +P +LDE T EQ+
Sbjct: 119 GLRERP----------THCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLA 168
Query: 1297 LA---KDMGITFVTSSQRPALI 1315
+ + G+T V S+ L
Sbjct: 169 ILRRLRAEGMTVVISTHDVDLA 190
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 1e-05
Identities = 47/204 (23%), Positives = 81/204 (39%), Gaps = 52/204 (25%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT--------KPSQHIDEEA 1168
++ + G+ + + G NG+GK+++ + + GL P SGS+ P
Sbjct: 17 FGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARA- 75
Query: 1169 GSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKT 1228
GI YVP+ +I L+ EE L + ++ K
Sbjct: 76 ----GIGYVPE---------GRRIFPELTVEENLLLGAYARRRAKR------------KA 110
Query: 1229 ILEGV-----RLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECT 1283
LE V RL ++ A LS GEQQ L +AR +PK +LDE +
Sbjct: 111 RLERVYELFPRLKERRKQL-----AGT-----LSGGEQQMLAIARALMSRPKLLLLDEPS 160
Query: 1284 NATSVDVEEQLYRLAKDM---GIT 1304
+ + E+++ +++ G+T
Sbjct: 161 EGLAPKIVEEIFEAIRELRDEGVT 184
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 1e-05
Identities = 42/190 (22%), Positives = 74/190 (38%), Gaps = 25/190 (13%)
Query: 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYV 518
++ NL L+++PG + + G +G+GK++L R++ G +P G +
Sbjct: 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS 456
Query: 519 PQRPYTAVGTLRDQLI----YPLTSDQEVEPLTHGGMVELLKNVDL--EYLLDRYPPEKE 572
P + I T D VE+L L L R
Sbjct: 457 ALIPGEYEPEFGEVTILEHLRSKTGDLNAA-------VEILNRAGLSDAVLYRRKF---- 505
Query: 573 INWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV----RAMGTSC 628
ELS G+++R +A+L +P ++DE + + R K+ R G +
Sbjct: 506 ----SELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITL 561
Query: 629 ITISHRPALV 638
I ++HRP +
Sbjct: 562 IVVTHRPEVG 571
|
Length = 593 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 59/198 (29%), Positives = 91/198 (45%), Gaps = 42/198 (21%)
Query: 1133 GPNGSGKSSVFRVLR---GLWPVVS--GSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGT 1187
GP+GSGKS++ R + L P V+ GS+ +I Y P+ T
Sbjct: 38 GPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNI-----------YSPR---TDTVD 83
Query: 1188 LRDQI--------IYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLL 1239
LR +I +P+S E + L+L G +K +LD ++ L+G S
Sbjct: 84 LRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDK-----QVLDEAVEKSLKGA--SIWD 136
Query: 1240 EREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNA----TSVDVEEQLY 1295
E ++ D+ L LS G+QQR+ +AR+ PK +LDE T+A ++ +EE L
Sbjct: 137 EVKDRLHDSALG----LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLL 192
Query: 1296 RLAKDMGITFVTSSQRPA 1313
L D + VT S + A
Sbjct: 193 GLKDDYTMLLVTRSMQQA 210
|
Length = 252 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 55/202 (27%), Positives = 89/202 (44%), Gaps = 35/202 (17%)
Query: 1121 FEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQR 1180
E+ G + + GP+GSGKS++ R++ GL SG + Q I +V Q
Sbjct: 21 LEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQH 80
Query: 1181 PYTCLG--TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYL 1238
Y T+RD I + L E + K+ + E+L LE V+L L
Sbjct: 81 -YALFKHLTVRDNIAFGL--EIRKHPKAKIKARVEEL--------------LELVQLEGL 123
Query: 1239 LEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQ----L 1294
+R + + LS G++QR+ +AR +P+ +LDE A V ++ L
Sbjct: 124 GDR----------YPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWL 173
Query: 1295 YRLAKDMGIT--FVTSSQRPAL 1314
+L ++ +T FVT Q A+
Sbjct: 174 RKLHDEVHVTTVFVTHDQEEAM 195
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-05
Identities = 64/222 (28%), Positives = 98/222 (44%), Gaps = 46/222 (20%)
Query: 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSD------- 510
V+ ++L + G L + G +GSGKS+L L L P G I G D
Sbjct: 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP-SQGEIRFDGQDIDGLSRKEM 358
Query: 511 --LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV--EPL-THGG----------MVELL 555
L + + V Q PY G+L P + ++ E L H ++E L
Sbjct: 359 RPLRRRMQVVFQDPY---GSLS-----PRMTVGQIIEEGLRVHEPKLSAAERDQRVIEAL 410
Query: 556 KNVDL-EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME 614
+ V L +RYP E S G++QR+ +AR KP+ +LDE TSA+ ++
Sbjct: 411 EEVGLDPATRNRYP--------HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQ 462
Query: 615 ERFCAKVRAM----GTSCITISHRPALV-AF-HDVVLSLDGE 650
+ +R + G S + ISH A+V A H V++ DG+
Sbjct: 463 AQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGK 504
|
Length = 534 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 2e-05
Identities = 52/199 (26%), Positives = 88/199 (44%), Gaps = 21/199 (10%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG------VGSDLNKEIF 516
++ + G + I G +G+GKS++ R+L + + SG I G L + I
Sbjct: 281 GISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIG 340
Query: 517 YVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEIN 574
VPQ T+ + Y P + +EV + + + P +
Sbjct: 341 IVPQDTVLFNDTIAYNIKYGRPDATAEEVG--------AAAEAAQIHDFIQSLPEGYDTG 392
Query: 575 WGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR--AMGTSCI 629
G+ +LS GE+QR+ +AR P ILDE TSA+ T E+ A +R + G + +
Sbjct: 393 VGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTL 452
Query: 630 TISHRPALVAFHDVVLSLD 648
I+HR + + D ++ LD
Sbjct: 453 VIAHRLSTIIDADEIIVLD 471
|
Length = 497 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 36/163 (22%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---------------AKP 505
V +++L+V G + + GPNG+GK++ F ++ GL SG I A+
Sbjct: 20 VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79
Query: 506 GVGSDLNKEIFYVPQRPYTAVG-TLRDQLIYPL---TSDQEVEPLTHGGMVELLKNVDLE 561
G+G Y+PQ T+ D ++ L D + + LL+ +
Sbjct: 80 GIG--------YLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEE-LDALLEEFHIT 130
Query: 562 YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
+L D LS GE++R+ +AR PKF +LDE
Sbjct: 131 HLRDSK--------AYSLSGGERRRVEIARALAANPKFILLDE 165
|
Length = 243 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 2e-05
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 451 KVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG--HIAKPGVG 508
K V++L+L V G + G NG+GK++ ++L G SG +I +
Sbjct: 8 KTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIR 67
Query: 509 SDLNK---EIFYVPQ 520
+D + Y PQ
Sbjct: 68 TDRKAARQSLGYCPQ 82
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 2e-05
Identities = 54/199 (27%), Positives = 82/199 (41%), Gaps = 24/199 (12%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176
+ EI + GP+GSGKS++ RV L + + ++D G IF
Sbjct: 20 DGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLD-----GQDIFK 74
Query: 1177 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS 1236
+ R Q+++ + L + G KL N L K + E VR
Sbjct: 75 MD----VIELRRRVQMVFQIPNPIPNLSIFENVALGLKL----NRLVKSKKELQERVR-- 124
Query: 1237 YLLEREEVGWDANLNWEDI----LSLGEQQRLGMARLFFHKPKFGILDECTN----ATSV 1288
+ LE+ ++ WD + D LS G+QQRL +AR +P+ + DE T +
Sbjct: 125 WALEKAQL-WDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTA 183
Query: 1289 DVEEQLYRLAKDMGITFVT 1307
+E L KDM I VT
Sbjct: 184 KIESLFLELKKDMTIVLVT 202
|
Length = 250 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 37/205 (18%), Positives = 73/205 (35%), Gaps = 43/205 (20%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL---VSGHIAKPGVGSDLNKEIF 516
++++ + V+PG +L+ G GSG S+L + L V G I G+ E +
Sbjct: 22 ILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKY 81
Query: 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWG 576
++IY D LT V L++ L G
Sbjct: 82 -------------PGEIIYVSEEDVHFPTLT----VRET----LDFALRCK--------G 112
Query: 577 DE----LSLGEQQRLGMARLFYHKPKFAILDECT----SAVTTDMEERFCAKVRAMGTSC 628
+E +S GE++R+ +A + D T S+ ++ + + T+
Sbjct: 113 NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTT 172
Query: 629 ITISHRPALVAFH---DVVLSLDGE 650
++ + + V++ +G
Sbjct: 173 FVSLYQASDEIYDLFDKVLVLYEGR 197
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 56/182 (30%), Positives = 80/182 (43%), Gaps = 33/182 (18%)
Query: 453 VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGG--LWPLVSGHIAKPGVGSD 510
+ N +++ L L + G I GPNGSGKS+L +V+ G + ++ G I G S
Sbjct: 15 ASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGE-SI 73
Query: 511 LNKE--------IFYVPQRPYTAVG-TLRDQLIYPLTSDQ------EVEPLTHGGMV-EL 554
L+ E IF Q P G + D L S + E++PL ++ E
Sbjct: 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEK 133
Query: 555 LKNVDL-EYLLDRYPPEKEINWGDELSLGEQQR---LGMARLFYHKPKFAILDECTSAVT 610
LK V + L R +N G S GE++R L MA L + AILDE S +
Sbjct: 134 LKLVGMDPSFLSRN-----VNEG--FSGGEKKRNEILQMALL---DSELAILDETDSGLD 183
Query: 611 TD 612
D
Sbjct: 184 ID 185
|
Length = 252 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 55/211 (26%), Positives = 91/211 (43%), Gaps = 37/211 (17%)
Query: 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG----- 500
E GVKV G + + ++ LK+ + GP+G GKS+L R + L+ G
Sbjct: 22 EVEGVKVFY-GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEG 80
Query: 501 -------HIAKPGVGS-DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMV 552
+I + S L +++ V QRP ++ + + + P +G
Sbjct: 81 RLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAF--------APRANG--- 129
Query: 553 ELLKNVD--LEYLLDRYPPEKEIN-----WGDELSLGEQQRLGMARLFYHKPKFAILDEC 605
N+D +E L R +E+ G LS G+QQRL +AR KP ++DE
Sbjct: 130 -YKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEP 188
Query: 606 TSA---VTTDMEERFCAKVRAMGTSCITISH 633
SA ++T E C +++ T I ++H
Sbjct: 189 CSALDPISTRQVEELCLELKEQYT-IIMVTH 218
|
Length = 274 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 57/232 (24%), Positives = 101/232 (43%), Gaps = 27/232 (11%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
I F V G ++ +T + PG +TG +G+GKS+L +++ G+ +G I
Sbjct: 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWF 61
Query: 505 PG--VGSDLNKEIFYVPQRP---YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVE------ 553
G + N+E+ ++ ++ + L D+ +Y D PL G
Sbjct: 62 SGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVY----DNVAIPLIIAGASGDDIRRR 117
Query: 554 LLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 613
+ +D LLD K N+ +LS GEQQR+G+AR +KP + DE T + +
Sbjct: 118 VSAALDKVGLLD-----KAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDAL 172
Query: 614 EE---RFCAKVRAMGTSCITISHRPALVAFHDV-VLSLDGEGEWRVHDKRDG 661
E R + +G + + +H L++ +L+L + +H G
Sbjct: 173 SEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTL---SDGHLHGGVGG 221
|
Length = 222 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 3e-05
Identities = 40/180 (22%), Positives = 74/180 (41%), Gaps = 26/180 (14%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCGIF 1175
++ I + G +GSGKS++ ++L G + SG + + ID I
Sbjct: 493 ISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQF-IN 551
Query: 1176 YVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRL 1235
Y+PQ PY G++ + ++ ++E + + I D
Sbjct: 552 YLPQEPYIFSGSILENLLLG-AKENVSQDEIW------AACEIAEIKDD----------- 593
Query: 1236 SYLLEREEVGWDANLNWEDI-LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQL 1294
+E +G+ L+ E +S G++QR+ +AR K ILDE T+ E+++
Sbjct: 594 ---IENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKI 650
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-05
Identities = 53/206 (25%), Positives = 87/206 (42%), Gaps = 49/206 (23%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSG------- 1171
+T + G++L++ GP+G+GKSS+ RVL L SG+L H D
Sbjct: 21 ITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80
Query: 1172 ---CGIFYVPQRPYTCLGTLRDQIIYP-----LSREEAELRALKLHGKGEKLVDTTNILD 1223
G+ + + L ++ I P LS+++A RA KL
Sbjct: 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKL--------------- 125
Query: 1224 SYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECT 1283
LE +RL +R + LS G+QQR+ +AR +P+ + DE T
Sbjct: 126 ------LERLRLKPYADR----------FPLHLSGGQQQRVAIARALMMEPQVLLFDEPT 169
Query: 1284 NATSVDVEEQLYRLAKDM---GITFV 1306
A ++ Q+ + +++ GIT V
Sbjct: 170 AALDPEITAQIVSIIRELAETGITQV 195
|
Length = 242 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 3e-05
Identities = 45/196 (22%), Positives = 82/196 (41%), Gaps = 24/196 (12%)
Query: 1120 TFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAG---SGCGIFY 1176
+ E+ PG+ + + GPNG+GK+++F ++ G + SG++ + I + GI
Sbjct: 24 SLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIAR 83
Query: 1177 VPQ--RPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVR 1234
Q R + L T+ + + L ++ + + +LE V
Sbjct: 84 TFQITRLFPGL-TVLENVAVGAHARLGLSGLLGRPRARKEERE----ARERARELLEFVG 138
Query: 1235 LSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECT---NAT-SVDV 1290
L L +R LS G+Q+RL +AR +PK +LDE N + ++
Sbjct: 139 LGELADRPAGN----------LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEEL 188
Query: 1291 EEQLYRLAKDMGITFV 1306
E + L G+T +
Sbjct: 189 AELIRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 52/214 (24%), Positives = 88/214 (41%), Gaps = 45/214 (21%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHID-EEAGSGCG-I 1174
+ ++F + G++L + G NGSGKS++ ++L G+ SG + + + I
Sbjct: 30 KPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRI 89
Query: 1175 FYVPQRPYTCL------GTLRDQIIYPLSRE---EAELRALKLHGKGEKLVDTTNILDSY 1225
+ Q P T L G + D +PL E E R
Sbjct: 90 RMIFQDPNTSLNPRLRIGQILD---FPLRLNTDLEPEQR--------------------- 125
Query: 1226 LKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNA 1285
K I E +R+ LL AN +L+ G++QR+ +AR +PK I DE +
Sbjct: 126 RKQIFETLRMVGLLPDH-----ANYY-PHMLAPGQKQRVALARALILRPKIIIADEALAS 179
Query: 1286 TSVDVEEQLYRLAKD----MGITFVTSSQRPALI 1315
+ + QL L + GI+++ +Q +I
Sbjct: 180 LDMSMRSQLINLMLELQEKQGISYIYVTQHIGMI 213
|
Length = 267 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 51/173 (29%), Positives = 77/173 (44%), Gaps = 42/173 (24%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVL---GGLWPLVS--------GH-IAKPGVGS- 509
+++L P + GP+GSGKS+L R + L P V+ GH I P +
Sbjct: 23 SVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82
Query: 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPP 569
DL KEI V Q+P ++ + ++Y L LK + + +LD
Sbjct: 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLR----------------LKGIKDKQVLDEAVE 126
Query: 570 E--KEINWGDE-----------LSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
+ K + DE LS G+QQR+ +AR+ PK +LDE TSA+
Sbjct: 127 KSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSAL 179
|
Length = 252 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 44/184 (23%), Positives = 79/184 (42%), Gaps = 25/184 (13%)
Query: 466 LKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTA 525
L V G + I GP+G+GKS+L ++ G SG I +D + QRP +
Sbjct: 19 LNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKV----NDQSHTGLAPYQRPVSM 74
Query: 526 VG---------TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWG 576
+ T+R + L ++ +V+ + V + LDR P
Sbjct: 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-------- 126
Query: 577 DELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGT----SCITIS 632
++LS G++QR+ +AR +LDE SA+ + E A V+ + + + + ++
Sbjct: 127 EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVT 186
Query: 633 HRPA 636
H +
Sbjct: 187 HHLS 190
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 3e-05
Identities = 57/210 (27%), Positives = 92/210 (43%), Gaps = 30/210 (14%)
Query: 444 YIE--FSGVKVVTPTGNVL-VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG 500
YIE S +++ TG L V++ +L +E G +I G +GSGKS++ R+L L G
Sbjct: 24 YIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83
Query: 501 HIAKPGVGSDLNK----EIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGM----- 551
+ GV D+ K E+ V ++ V + + D + G+
Sbjct: 84 QVLIDGV--DIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEER 141
Query: 552 ----VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
++ L+ V LE YP DELS G +QR+G+AR P ++DE S
Sbjct: 142 REKALDALRQVGLENYAHSYP--------DELSGGMRQRVGLARALAINPDILLMDEAFS 193
Query: 608 A----VTTDMEERFCAKVRAMGTSCITISH 633
A + T+M++ + + ISH
Sbjct: 194 ALDPLIRTEMQDELVKLQAKHQRTIVFISH 223
|
Length = 400 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 3e-05
Identities = 15/42 (35%), Positives = 29/42 (69%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502
+++++ +V G + + G NG+GKS+L R+L G++P SG +
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTV 79
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 25/169 (14%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP------LVSGHIAKPGVGSDLNKE 514
V+ L+ + G L I G NGSGKS+L ++L G+ L+ H G S ++
Sbjct: 29 VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQR 88
Query: 515 IFYVPQRPYTA------VGTLRDQLIYPLTSDQEVEPLT-HGGMVELLKNVDLEYLLDRY 567
I + Q P T+ + + D +PL + ++EP ++E L+ V L
Sbjct: 89 IRMIFQDPSTSLNPRQRISQILD---FPLRLNTDLEPEQREKQIIETLRQVGLL------ 139
Query: 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 616
P+ + L+ G++QRLG+AR +PK I DE +++ DM R
Sbjct: 140 -PDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASL--DMSMR 185
|
Length = 267 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 3e-05
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 36/202 (17%)
Query: 454 TPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----- 508
TP ++N+ +++E G + + G GSGKS+L + L GL SG I GV
Sbjct: 16 TPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKK 75
Query: 509 ---SDLNKEIFYVPQRP-YTAVGTLRDQLIY------PLT---SDQEVEPLTHGGMVELL 555
SD+ K++ V Q P Y L ++ I P+ S++E+E M ++
Sbjct: 76 VKLSDIRKKVGLVFQYPEY----QLFEETIEKDIAFGPINLGLSEEEIENRVKRAM-NIV 130
Query: 556 KNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 615
+D E D+ P ELS G+++R+ +A + +PK ILDE T+ + +
Sbjct: 131 G-LDYEDYKDKSP--------FELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRD 181
Query: 616 RFCAKVRAM----GTSCITISH 633
K++ + + I +SH
Sbjct: 182 EILNKIKELHKEYNMTIILVSH 203
|
Length = 287 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 4e-05
Identities = 60/231 (25%), Positives = 97/231 (41%), Gaps = 57/231 (24%)
Query: 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL----- 497
N IE +KV VL + + L++ + + GP+GSGKS+L RV L L
Sbjct: 2 NKIEIRDLKVSFGQVEVL-DGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEAR 60
Query: 498 VSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRD--QLIYPLTSDQEVEPLTHGGMVELL 555
VSG + G ++IF + V LR Q+++ Q P+ + + +
Sbjct: 61 VSGEVYLDG------QDIFKMD------VIELRRRVQMVF-----QIPNPIPN---LSIF 100
Query: 556 KNVDLEYLLDRYPPEKE-----INWGDE------------------LSLGEQQRLGMARL 592
+NV L L+R K+ + W E LS G+QQRL +AR
Sbjct: 101 ENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARA 160
Query: 593 FYHKPKFAILDECTSAV----TTDMEERFCAKVRAMGTSCITISHRPALVA 639
+P+ + DE T+ + T +E F + M + + ++H P A
Sbjct: 161 LAFQPEVLLADEPTANLDPENTAKIESLFLELKKDM--TIVLVTHFPQQAA 209
|
Length = 250 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 4e-05
Identities = 41/147 (27%), Positives = 65/147 (44%), Gaps = 19/147 (12%)
Query: 464 LTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---AKPGVGSDLNKEIFYVPQ 520
L V+ G LL+ G NG+GK++L RVL GL + SG I K D ++ + Y+
Sbjct: 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGH 89
Query: 521 RP--YTAVGTLRDQLIYPLTSDQEVEP-LTHGGMVELLKNVDLEYLLDRYPPEKEINWGD 577
P + TL + ++ L G + ++ E L R
Sbjct: 90 LPGLKADLSTLEN--LHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVR----------- 136
Query: 578 ELSLGEQQRLGMARLFYHKPKFAILDE 604
+LS G+++RL +ARL+ +LDE
Sbjct: 137 QLSAGQKKRLALARLWLSPAPLWLLDE 163
|
Length = 214 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 4e-05
Identities = 54/213 (25%), Positives = 90/213 (42%), Gaps = 42/213 (19%)
Query: 1118 QLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGL----WPV-VSGSLTKPSQHIDEEAGSGC 1172
++ +I K + GP+G GKS+ + L + PV V G + Q+I +
Sbjct: 25 GISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYD------ 78
Query: 1173 GIFYVPQRPYTCLGTLRDQI--------IYPLSREEAELRALKLHGKGEKLVDTTNILDS 1224
P + LR QI +P+S E +++ K + D I++S
Sbjct: 79 --------PRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQA-DLDEIVES 129
Query: 1225 YLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTN 1284
LK + L + +G LS G+QQRL +AR KPK ++DE +
Sbjct: 130 ALKGAALWQEVKDKLNKSALG----------LSGGQQQRLCIARALAIKPKVLLMDEPCS 179
Query: 1285 A----TSVDVEEQLYRLAKDMGITFVTSSQRPA 1313
A ++ VEE ++ L ++ I VT + + A
Sbjct: 180 ALDPIATMKVEELIHSLRSELTIAIVTHNMQQA 212
|
Length = 259 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 4e-05
Identities = 49/174 (28%), Positives = 79/174 (45%), Gaps = 24/174 (13%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSS---LFRVLGGLWP--------LVSGH-IAKPGVG 508
++ +++++E S + GP+G GKS+ LF + L P + G I GV
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 509 SD-LNKEIFYVPQRPYTAVGTLRDQLIYPL-TSDQEVEPLTHGGMVELLKNVDL-EYLLD 565
D L K + V QRP ++ + + Y L + + + E LK L + + D
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD 138
Query: 566 RYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV----TTDMEE 615
+ KE + LS G+QQRL +AR P ++DE SA+ T +EE
Sbjct: 139 KL---KESAFA--LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEE 187
|
Length = 250 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 4e-05
Identities = 54/214 (25%), Positives = 87/214 (40%), Gaps = 54/214 (25%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSL-----------TKPSQHIDEE 1167
++ E+ G+ + G +G+GK+++ +++ G+ SG + TKP
Sbjct: 303 VSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGR 362
Query: 1168 AGSGCGIFY-----VPQRPYTCLGTLRDQIIYPLSREEAELRA---LKLHGKGEKLVDTT 1219
A GI + P R T L L + I L E A ++A LK+ G E+
Sbjct: 363 AKRYIGILHQEYDLYPHR--TVLDNLTEAIGLELPDELARMKAVITLKMVGFDEE--KAE 418
Query: 1220 NILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGIL 1279
ILD Y D LS GE+ R+ +A++ +P+ IL
Sbjct: 419 EILDKY---------------------------PDELSEGERHRVALAQVLIKEPRIVIL 451
Query: 1280 DECTNA----TSVDVEEQLYRLAKDMGITFVTSS 1309
DE T T VDV + + ++M TF+ S
Sbjct: 452 DEPTGTMDPITKVDVTHSILKAREEMEQTFIIVS 485
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 5e-05
Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 40/180 (22%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
IE + +K VL +++L + G + + GP+GSGK++L R++ GL SGHI
Sbjct: 3 IEIANIKKSFGRTQVL-NDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRF 61
Query: 505 PGVGSDL------NKEIFYVPQRPYTAVG--TLRDQLIYPLTS------------DQEVE 544
G +D+ ++++ +V Q Y T+ D + + LT +V
Sbjct: 62 HG--TDVSRLHARDRKVGFVFQH-YALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKV- 117
Query: 545 PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
+LL+ V L +L DRYP + LS G++QR+ +AR +P+ +LDE
Sbjct: 118 -------TQLLEMVQLAHLADRYPAQ--------LSGGQKQRVALARALAVEPQILLLDE 162
|
Length = 353 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 5e-05
Identities = 51/194 (26%), Positives = 78/194 (40%), Gaps = 31/194 (15%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLN-------- 512
+ N++L V G +++ GP+GSGKS+L R L + G I G ++
Sbjct: 27 LRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPRE 86
Query: 513 ------KEIFYVPQ--RPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLL 564
I YV Q R V L D + PL + + +LL ++L L
Sbjct: 87 VLEVRRTTIGYVSQFLRVIPRVSAL-DVVAEPLLARGVPREVARAKAADLLTRLNLPERL 145
Query: 565 DRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER-----FCA 619
P S GEQQR+ +AR F +LDE T+++ D R
Sbjct: 146 WSLAPAT-------FSGGEQQRVNIARGFIVDYPILLLDEPTASL--DATNRAVVVELIR 196
Query: 620 KVRAMGTSCITISH 633
+ +A G + + I H
Sbjct: 197 EAKARGAALVGIFH 210
|
Length = 235 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 6e-05
Identities = 57/208 (27%), Positives = 92/208 (44%), Gaps = 55/208 (26%)
Query: 1118 QLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQH----------IDEE 1167
+ I G+ +++ GP+GSGKS++ R + L + SG L I +E
Sbjct: 19 NIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78
Query: 1168 AGSGCGIFYV-PQRPYTCLGTLRDQIIYPL-----SREEAELRALKLHGKGEKLVDTTNI 1221
AG FY+ P L L + + PL S+EEAE +A +L K
Sbjct: 79 AGMVFQQFYLFPH-----LTALENVMFGPLRVRGASKEEAEKQARELLAK---------- 123
Query: 1222 LDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDE 1281
V L+ ER A+ ++ LS G+QQR+ +AR KPK + DE
Sbjct: 124 -----------VGLA---ER------AH-HYPSELSGGQQQRVAIARALAVKPKLMLFDE 162
Query: 1282 CTNATSVDVEEQLYRLAKDM---GITFV 1306
T+A ++ ++ ++ +D+ G+T V
Sbjct: 163 PTSALDPELRHEVLKVMQDLAEEGMTMV 190
|
Length = 240 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 6e-05
Identities = 49/192 (25%), Positives = 78/192 (40%), Gaps = 39/192 (20%)
Query: 1133 GPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQR----PYTCLGTL 1188
GP+G GK+++ R+L G SGS+ + + I V Q P+ T+
Sbjct: 3 GPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHM---TV 59
Query: 1189 RDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDA 1248
+ + + L K+ V I + L V+L +R+
Sbjct: 60 EENVAFGL----------KMRK-----VPRAEI-KPRVLEALRLVQLEEFADRKPHQ--- 100
Query: 1249 NLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQ----LYRLAKDMGIT 1304
LS G+QQR+ +AR KPK +LDE +A + +Q L + + +GIT
Sbjct: 101 -------LSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGIT 153
Query: 1305 --FVTSSQRPAL 1314
FVT Q A+
Sbjct: 154 FVFVTHDQEEAM 165
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 6e-05
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTK 1159
+SFS + ++ + + L+ E+ G+ + + G +GSGKS++ ++L G G +T
Sbjct: 6 VSFSYPE----QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITL 61
Query: 1160 PSQHIDE-EAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRAL 1206
+ + E I + QRPY TLR+ + S E + AL
Sbjct: 62 DGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRLAL 109
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 6e-05
Identities = 49/200 (24%), Positives = 88/200 (44%), Gaps = 24/200 (12%)
Query: 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYV 518
VL+ ++++ V G ++ G GSGKS+L + L + + G + + I YV
Sbjct: 674 VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWA-------ERSIAYV 726
Query: 519 PQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYL---LDRYPPEKEINW 575
PQ+ + T+R +++ D+E + DL L L+ EK +N
Sbjct: 727 PQQAWIMNATVRGNILF---FDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVN- 782
Query: 576 GDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTD-----MEERFCAKVRAMGTSCIT 630
LS G++ R+ +AR Y +LD+ SA+ +EE F + G + +
Sbjct: 783 ---LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALA--GKTRVL 837
Query: 631 ISHRPALVAFHDVVLSLDGE 650
+H+ +V D V++L
Sbjct: 838 ATHQVHVVPRADYVVALGDG 857
|
Length = 1560 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 6e-05
Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 31/177 (17%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA- 503
I+ +GV + +V L+ V G + GPNG+GKS++ R++ G+ +G I
Sbjct: 42 IDLAGVSK-SYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITV 100
Query: 504 ----KPGVGSDLNKEIFYVPQ-----RPYTAVGTLRDQLI----YPLTSDQEVEPLTHGG 550
P I VPQ +T R+ L+ Y S +E+E +
Sbjct: 101 LGVPVPARARLARARIGVVPQFDNLDLEFTV----RENLLVFGRYFGMSTREIEAV---- 152
Query: 551 MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
+ LL+ LE D +LS G ++RL +AR + P+ ILDE T+
Sbjct: 153 IPSLLEFARLESKADARVS--------DLSGGMKRRLTLARALINDPQLLILDEPTT 201
|
Length = 340 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 6e-05
Identities = 56/224 (25%), Positives = 97/224 (43%), Gaps = 28/224 (12%)
Query: 443 NYIEFSGVKVVTP-TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
N +EF V P + + +++ + GS + G NGSGKS++ +++ GL L+
Sbjct: 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGL--LLPDD 61
Query: 502 IAKPGV---GSDLNKEIFY--------VPQRPYTA-VG-TLRDQLIYPLTSDQEVEPLTH 548
+ G L + + V Q P VG T+ D + + L + P
Sbjct: 62 NPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMI 121
Query: 549 GGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
+ ++L +V + +D P LS G++QR+ +A + +PK ILDE TS
Sbjct: 122 KIVRDVLADVGMLDYIDSEP--------ANLSGGQKQRVAIAGILAVEPKIIILDESTSM 173
Query: 609 VTTDMEERFCAKVRAM----GTSCITISHRPALVAFHDVVLSLD 648
+ +E+ +R + + I+I+H D VL LD
Sbjct: 174 LDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLD 217
|
Length = 282 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 7e-05
Identities = 48/201 (23%), Positives = 77/201 (38%), Gaps = 49/201 (24%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCG--- 1173
R ++ +I G+++ + GP+GSGKS++ ++ + V SG + ID
Sbjct: 19 RDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL-----IDGHDVRDYTLAS 73
Query: 1174 ----IFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTI 1229
I V Q + T+ + I Y R A +
Sbjct: 74 LRRQIGLVSQDVFLFNDTVAENIAY--GRPGATREE-----------------------V 108
Query: 1230 LEGVRLSYLLE---REEVGWDANLNWEDI-LSLGEQQRLGMARLFFHKPKFGILDECTNA 1285
E R + E G+D + + LS G++QR+ +AR P ILDE T+A
Sbjct: 109 EEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSA 168
Query: 1286 TSVDVE------EQLYRLAKD 1300
+D E L RL K+
Sbjct: 169 --LDTESERLVQAALERLMKN 187
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 7e-05
Identities = 44/168 (26%), Positives = 66/168 (39%), Gaps = 44/168 (26%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH--IAKPGVGSDLNKE---- 514
V+ + KV G GPNG+GK++ R+L L SG +A G D+ +E
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVA----GYDVVREPRKV 64
Query: 515 ---IFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGM------------VELLKNVD 559
I VPQ ++ + LT + +E G + ELL+ +
Sbjct: 65 RRSIGIVPQYA-----SVDED----LTGRENLE--MMGRLYGLPKDEAEERAEELLELFE 113
Query: 560 LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
L DR S G ++RL +A H+P LDE T+
Sbjct: 114 LGEAADRPV--------GTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 8e-05
Identities = 49/206 (23%), Positives = 92/206 (44%), Gaps = 31/206 (15%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176
++ +I G+ + + GP+GSGK+++ R++ GL SG++ + + + +
Sbjct: 19 DDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGF 78
Query: 1177 VPQRPYTCLG--TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVR 1234
V Q Y T+ D + + L + R + + + + +L+ V+
Sbjct: 79 VFQH-YALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAK------------VHELLKLVQ 125
Query: 1235 LSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQL 1294
L +L +R + LS G++QR+ +AR +PK +LDE A V ++L
Sbjct: 126 LDWLADR----------YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKEL 175
Query: 1295 Y----RLAKDMGIT--FVTSSQRPAL 1314
RL ++ +T FVT Q AL
Sbjct: 176 RRWLRRLHDELHVTTVFVTHDQEEAL 201
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 8e-05
Identities = 49/217 (22%), Positives = 89/217 (41%), Gaps = 36/217 (16%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176
++ I G+ ++V GP+G GK+++ ++ G GS+ + I E G+ G+ +
Sbjct: 22 EDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRI-EGPGAERGVVF 80
Query: 1177 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS 1236
+ L + D + + L +LR + K ++ +L LEG
Sbjct: 81 QNEALLPWL-NVIDNVAFGL-----QLRGI---EKAQRREIAHQML---ALVGLEGAEHK 128
Query: 1237 YLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYR 1296
Y+ W+ LS G +QR+G+AR +P+ +LDE A EQ+
Sbjct: 129 YI-------------WQ--LSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQE 173
Query: 1297 LAKDM------GITFVTSSQRPALIPFHSLELRLIDG 1327
L D+ + +T AL F + L ++
Sbjct: 174 LLLDLWQETGKQVLLITHDIEEAL--FLATRLVVLSP 208
|
Length = 259 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 8e-05
Identities = 39/197 (19%), Positives = 67/197 (34%), Gaps = 48/197 (24%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGS-GCGIF 1175
R ++F + G+ + GPNG+GK++ ++L L SG T + E I
Sbjct: 17 RGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIG 76
Query: 1176 YVPQRPYTCLGTLRDQI-----------IYPLSREEAELRALKLHGKGEKLVDTTNILDS 1224
V Q ++ D++ +Y + E R +L V D
Sbjct: 77 IVFQDL-----SVDDELTGWENLYIHARLYGVPGAERRERIDELL----DFVGLLEAADR 127
Query: 1225 YLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTN 1284
+KT S G ++RL +AR H+P+ LDE T
Sbjct: 128 LVKT---------------------------YSGGMRRRLEIARSLVHRPEVLFLDEPTI 160
Query: 1285 ATSVDVEEQLYRLAKDM 1301
++ + +
Sbjct: 161 GLDPQTRAHVWEYIEKL 177
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 8e-05
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL--WPLVSGHIAKPGVGSDLN---KE 514
L++N++ K +PG I GP+G+GKS+L L G VSG + G D K
Sbjct: 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKI 83
Query: 515 IFYVPQ 520
I YVPQ
Sbjct: 84 IGYVPQ 89
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 8e-05
Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 29/163 (17%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV------GSD 510
V++++++L + G I GPNG+GKS+L ++ L SG I G+ +
Sbjct: 13 TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKE 72
Query: 511 LNKEIFYVPQR-PYTAVGTLRDQLI---YP-----LTSDQEVEPLTHGGMVELLKNVDLE 561
L K++ + Q + T+RD + +P LT + + E ++ + LE
Sbjct: 73 LAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRI------INEAIEYLHLE 126
Query: 562 YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
L DRY DELS G++QR +A + + +LDE
Sbjct: 127 DLSDRYL--------DELSGGQRQRAFIAMVLAQDTDYVLLDE 161
|
Length = 252 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 9e-05
Identities = 39/176 (22%), Positives = 68/176 (38%), Gaps = 40/176 (22%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGS---GCG 1173
R ++FE G+ + G NG+GK+++ R++ L SG +T + G
Sbjct: 19 RDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIG 78
Query: 1174 IFYVPQRPYTCLGTLRDQI-----IYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKT 1228
+ + +R T R+ + + LSR+E + R +L K + L YL
Sbjct: 79 VLF-GERGLYARLTARENLKYFARLNGLSRKEIKARIAEL----SKRLQ----LLEYLDR 129
Query: 1229 ILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTN 1284
+ S G +Q++ +AR H P +LDE T+
Sbjct: 130 RVGE-----------------------FSTGMKQKVAIARALVHDPSILVLDEPTS 162
|
Length = 245 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 9e-05
Identities = 48/186 (25%), Positives = 79/186 (42%), Gaps = 35/186 (18%)
Query: 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSL-------------FR 489
N+ + G K V+N+T+K+ I GP+G GK++L FR
Sbjct: 8 NFSAYYGEKKA-------VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR 60
Query: 490 VLGGLWPLVSGH-IAKPGVG-SDLNKEIFYVPQRPYTAVGTLRDQLIYPL----TSDQEV 543
V G + G I P + ++ K++ V Q+P ++ D + + +
Sbjct: 61 VEGKI--YFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHK 118
Query: 544 EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILD 603
+VE +++ L D E G LS G+QQRL +AR +P+ +LD
Sbjct: 119 ----LDRIVE--ESLKKAALWDEVKSELNKP-GTRLSGGQQQRLCIARALAVEPEVILLD 171
Query: 604 ECTSAV 609
E TSA+
Sbjct: 172 EPTSAL 177
|
Length = 250 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 9e-05
Identities = 48/171 (28%), Positives = 75/171 (43%), Gaps = 35/171 (20%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG------------HIAKPGVG 508
++N+++++ S + GP+G GKS+ R L + L+ I +P V
Sbjct: 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87
Query: 509 S-DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHG-------GMVEL-LKNVD 559
+L K + V Q+P ++ D + Y P HG G+VE L++
Sbjct: 88 VVELRKNVGMVFQKPNPFPMSIYDNVAY--------GPRIHGANKKDLDGVVENALRSAA 139
Query: 560 L-EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
L + DR LS G+QQRL +AR KPK + DE TSA+
Sbjct: 140 LWDETSDRLKSP-----ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSAL 185
|
Length = 258 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 9e-05
Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 35/170 (20%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG------------HIAKPGVG 508
++++ L + + GP+G GKS+L R L + L+ G +I P V
Sbjct: 23 LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82
Query: 509 -SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTS--------DQEVE-PLTHGGMVELLKNV 558
+L + + V Q+P ++ D + Y L D+ VE L + + +K+
Sbjct: 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD- 141
Query: 559 DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
L + LS G+QQRL +AR KP+ ++DE TSA
Sbjct: 142 ----RLHKS--------ALGLSGGQQQRLCIARALAVKPEVLLMDEPTSA 179
|
Length = 253 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 1e-04
Identities = 60/223 (26%), Positives = 90/223 (40%), Gaps = 65/223 (29%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP-----VVSGSLT---KPSQHIDEEA 1168
++FE+ G+ L + G +GSGKS + + + GL P +V G + K + E+
Sbjct: 22 DGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81
Query: 1169 GS---GCGIFYVPQRPYTCLG---TLRDQIIYPL-------SREEAELRALKLHGKGEKL 1215
G I + Q P T L T+ DQI L S++EA+ RA++L +L
Sbjct: 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELL----EL 137
Query: 1216 V---DTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFH 1272
V D L SY E LS G +QR+ +A
Sbjct: 138 VGIPDPERRLKSY--------------PHE-------------LSGGMRQRVMIAMALAL 170
Query: 1273 KPKFGILDECTNATSVDVE------EQLYRLAKDMGIT--FVT 1307
PK I DE T T++DV + L L ++ G +T
Sbjct: 171 NPKLLIADEPT--TALDVTVQAQILDLLKELQREKGTALILIT 211
|
Length = 316 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-04
Identities = 56/206 (27%), Positives = 92/206 (44%), Gaps = 53/206 (25%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSG-------SLTKPSQHIDEEAGSG 1171
+ + G+ +++ GP+GSGKS++ R + L SG LT ++I+E
Sbjct: 19 IDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELR-QK 77
Query: 1172 CGIFYVPQR----PY-TCLG--TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDS 1224
G+ V Q+ P+ T L TL + +S+ EAE RAL+L
Sbjct: 78 VGM--VFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALEL---------------- 119
Query: 1225 YLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTN 1284
LE V L+ ++ + + LS G+QQR+ +AR PK + DE T+
Sbjct: 120 -----LEKVGLA---DKADA-------YPAQLSGGQQQRVAIARALAMNPKVMLFDEPTS 164
Query: 1285 A----TSVDVEEQLYRLAKDMGITFV 1306
A +V + + LA++ G+T V
Sbjct: 165 ALDPELVGEVLDVMKDLAEE-GMTMV 189
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 48/187 (25%), Positives = 72/187 (38%), Gaps = 42/187 (22%)
Query: 1121 FEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQR 1180
G+ L + GPNG+GK+++ R + GL P G++ I YVPQR
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGA---SPGKGWRHIGYVPQR 57
Query: 1181 -------PYTCLGTL---RDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTIL 1230
P + T+ R I L R + D + D+ L
Sbjct: 58 HEFAWDFPISVAHTVMSGRTGHIGWLRR--------------PCVADFAAVRDA-----L 98
Query: 1231 EGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDV 1290
V L+ L +R VG LS G++QR+ +AR +P +LDE +
Sbjct: 99 RRVGLTELADR-PVGE---------LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPT 148
Query: 1291 EEQLYRL 1297
+E L L
Sbjct: 149 QELLTEL 155
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 58/214 (27%), Positives = 96/214 (44%), Gaps = 35/214 (16%)
Query: 1125 PGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS---LTKPSQHIDEEAGSGC---GIFYVP 1178
G+++ + G +GSGKS++ +L GL SG + +P +DEEA + + +V
Sbjct: 35 RGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVF 94
Query: 1179 QRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYL 1238
Q + + TL + E EL AL L G+ + + N + L+ + G RL +L
Sbjct: 95 QS-FMLIPTLN-------ALENVELPAL-LRGESSR--QSRNGAKALLEQLGLGKRLDHL 143
Query: 1239 LEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTN----ATSVDVEEQL 1294
+ LS GEQQR+ +AR F +P DE T T + + L
Sbjct: 144 PAQ--------------LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLL 189
Query: 1295 YRLAKDMGITFVTSSQRPALIPFHSLELRLIDGE 1328
+ L ++ G T + + L LRL++G+
Sbjct: 190 FSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQ 223
|
Length = 228 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-04
Identities = 19/46 (41%), Positives = 31/46 (67%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502
+L+++L+ K+ PG + + GPNG+GKS+LFR++ G SG I
Sbjct: 334 DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 1e-04
Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 28/165 (16%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---DLNKEIFY 517
V+N++L+V+ G I G +G+GK++L +++ G+ SG + VG D+ K
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVR-VGDEWVDMTKPGPD 358
Query: 518 VPQRPYTAVGTLRDQL-IYP-------LTSDQEVE-PLTHGGM--VELLKNVDL-----E 561
R +G L + +YP LT +E P M V LK V E
Sbjct: 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAE 418
Query: 562 YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606
+LD+YP DELS GE+ R+ +A++ +P+ ILDE T
Sbjct: 419 EILDKYP--------DELSEGERHRVALAQVLIKEPRIVILDEPT 455
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 46/168 (27%), Positives = 68/168 (40%), Gaps = 37/168 (22%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLF-----RVLGGLWPLVSGHIAKPGVGSD---L 511
++ +++L VE G + I G +GSGK++L RV GG SG I G
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGG--GTTSGQILFNGQPRKPDQF 79
Query: 512 NKEIFYVPQRPYTAVG-TLRDQLIYPLT-----------SDQEVEPLTHGGMVELLKNVD 559
K + YV Q G T+R+ L Y + VE LL+++
Sbjct: 80 QKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVE-------DVLLRDLA 132
Query: 560 LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
L + +S GE++R+ +A PK ILDE TS
Sbjct: 133 LTRIGGNLVK--------GISGGERRRVSIAVQLLWDPKVLILDEPTS 172
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-04
Identities = 42/143 (29%), Positives = 62/143 (43%), Gaps = 31/143 (21%)
Query: 476 ITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG-VGSDLNKEIFYVPQR------------- 521
+ GP+GSGK+SL ++ GL G I G V D K IF P++
Sbjct: 29 LFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLF 88
Query: 522 PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSL 581
P+ V R L Y + +L+ + +E+LLDRYP LS
Sbjct: 89 PHYTV---RGNLRY------GMWKSMRAQFDQLVALLGIEHLLDRYP--------GTLSG 131
Query: 582 GEQQRLGMARLFYHKPKFAILDE 604
GE+QR+ + R P+ ++DE
Sbjct: 132 GEKQRVAIGRALLTAPELLLMDE 154
|
Length = 352 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 49/226 (21%), Positives = 96/226 (42%), Gaps = 24/226 (10%)
Query: 441 EANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG 500
E ++ + G ++ + + ++ G I G NG+GKS+LF+ L G+ SG
Sbjct: 2 EDYILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSG 61
Query: 501 HIAKPGVGSD--------LNKEIFYVPQRPYTAV--GTLRDQLIYPLTSDQEVEPLTHGG 550
I G D L + + V Q P + ++ + + + + E
Sbjct: 62 RILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR 121
Query: 551 MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV- 609
+ LK +E+L D K + LS G+++R+ +A + +PK +LDE T+ +
Sbjct: 122 VDNALKRTGIEHLKD-----KPTHC---LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLD 173
Query: 610 ---TTDMEERFCAKVRAMGTSCITISHRPALVAFH-DVVLSLDGEG 651
+++ + + +G + I +H +V + D V + EG
Sbjct: 174 PMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMK-EG 218
|
Length = 283 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 55/166 (33%), Positives = 77/166 (46%), Gaps = 36/166 (21%)
Query: 465 TLKVEPGS-----NLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---SDLNKEIF 516
TL+VE GS + I GPNG GK++ ++L G+ KP G +L+ +
Sbjct: 14 TLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGV--------LKPDEGDIEIELDT-VS 64
Query: 517 YVPQR---PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI 573
Y PQ Y GT+RD L+ +T D P E+ K + +E +LDR P
Sbjct: 65 YKPQYIKADYE--GTVRD-LLSSITKDFYTHPYFK---TEIAKPLQIEQILDREVP---- 114
Query: 574 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCA 619
ELS GE QR+ +A +LDE SA D+E+R A
Sbjct: 115 ----ELSGGELQRVAIAACLSKDADIYLLDE-PSA-YLDVEQRLMA 154
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 48/195 (24%), Positives = 78/195 (40%), Gaps = 52/195 (26%)
Query: 1110 PSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAG 1169
++ L ++ + PG L+ GPNG+GK+++ R+L L P SG++ ID +
Sbjct: 11 GKKRAL-DGVSLTLGPGMYGLL-GPNGAGKTTLMRILATLTPPSSGTIR-----IDGQDV 63
Query: 1170 SGCG------IFYVPQRPYTCLGTLRDQIIYPLSREEAELR---ALK-LHGKGEKLVDTT 1219
I Y+PQ +YP L LK + K K
Sbjct: 64 LKQPQKLRRRIGYLPQEF----------GVYPNFTVREFLDYIAWLKGIPSKEVK----- 108
Query: 1220 NILDSYLKTILEGVRLSYLLER--EEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFG 1277
+ E + L L +R +++G LS G ++R+G+A+ P
Sbjct: 109 -------ARVDEVLELVNLGDRAKKKIG---------SLSGGMRRRVGIAQALVGDPSIL 152
Query: 1278 ILDECTNATSVDVEE 1292
I+DE T +D EE
Sbjct: 153 IVDEPT--AGLDPEE 165
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 2e-04
Identities = 51/225 (22%), Positives = 94/225 (41%), Gaps = 49/225 (21%)
Query: 1098 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSL 1157
+++S + T + L ++ EI G+ + G +G+GKS++ R++ L SGS+
Sbjct: 5 ENVSKTFGQTGTGTVTAL-DDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSV 63
Query: 1158 TKPSQHIDEEAGSGC-----GIFYVPQRPYTCLG--TLRDQIIYPL-----SREEAELRA 1205
Q + + + I + Q + L T+ + + +PL + E + R
Sbjct: 64 FVDGQDLTALSEAELRQLRQKIGMIFQH-FNLLSSRTVFENVAFPLELAGVPKAEIKQRV 122
Query: 1206 LKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLG 1265
+L LE V LS +R LS G++QR+
Sbjct: 123 AEL---------------------LELVGLSDKADRYPAQ----------LSGGQKQRVA 151
Query: 1266 MARLFFHKPKFGILDECTNA----TSVDVEEQLYRLAKDMGITFV 1306
+AR + PK + DE T+A T+ + E L + +++G+T V
Sbjct: 152 IARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIV 196
|
Length = 339 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 43/202 (21%), Positives = 83/202 (41%), Gaps = 45/202 (22%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176
+ + +I G+ +++ GP+G GKS++ R++ GL SG + + + + GI
Sbjct: 20 KDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAM 79
Query: 1177 VPQRPYTCL---GTLRDQIIYPL-----SREEAELRALKLHGKGEKLVDTTNILDSYLKT 1228
V Q L T+ + I + L + E + R ++ KL+ ++L+
Sbjct: 80 VFQNY--ALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEV----AKLLGLEHLLNRKPLQ 133
Query: 1229 ILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTN---- 1284
LS G++QR+ +AR KPK +LDE +
Sbjct: 134 ---------------------------LSGGQRQRVALARALVRKPKVFLLDEPLSNLDA 166
Query: 1285 ATSVDVEEQLYRLAKDMGITFV 1306
V + ++ +L + +G T +
Sbjct: 167 KLRVLMRSEIKKLHERLGTTTI 188
|
Length = 338 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-04
Identities = 58/220 (26%), Positives = 86/220 (39%), Gaps = 60/220 (27%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--------- 1167
+ ++F+I G++L + G +GSGKS + GL P + + S D E
Sbjct: 27 KGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQ 86
Query: 1168 --AGSGCGIFYVPQRPYTCLG---TLRDQIIYPL------SREEAELRALKLHGKGEKLV 1216
G I + Q P T L T+ Q+ L SR A RAL+L +LV
Sbjct: 87 LRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELL----ELV 142
Query: 1217 ---DTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHK 1273
+ LD+Y LS G++QR+ +A ++
Sbjct: 143 GIPEPEKRLDAYPHE---------------------------LSGGQRQRVMIAMALANE 175
Query: 1274 PKFGILDECTNATSVDVEEQLYRLAKD------MGITFVT 1307
P I DE T A V V+ Q+ L K+ M I F+T
Sbjct: 176 PDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFIT 215
|
Length = 534 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 55/213 (25%), Positives = 90/213 (42%), Gaps = 42/213 (19%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRG--LWPVVSGSLTKPSQHI-----DEEAG 1169
+ + + G+ + GPNGSGKS++ + + G + V SG++ Q + DE A
Sbjct: 17 KGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERAR 76
Query: 1170 SGCGIFYVPQRPYTCLGT-----LRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDS 1224
+ G+F Q P G LR + A A +GE+ +D + L
Sbjct: 77 A--GLFLAFQYPEEIPGVSNLEFLRSAL-------NARRSA-----RGEEPLDLLDFLK- 121
Query: 1225 YLKTILEGVRLSY-LLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECT 1283
LK L + + L R ++N + S GE++R + ++ +PK ILDE
Sbjct: 122 LLKAKLALLGMDEEFLNR-------SVN--EGFSGGEKKRNEILQMALLEPKLAILDEID 172
Query: 1284 NATSVD----VEEQLYRLA-KDMGITFVTSSQR 1311
+ +D V E + RL D +T QR
Sbjct: 173 SGLDIDALKIVAEGINRLREPDRSFLIITHYQR 205
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 35/165 (21%)
Query: 1122 EIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHI-----DEEAGSGCGIFY 1176
EIV LL GPNG+GK++ F ++ GL SG + + I + A G G Y
Sbjct: 31 EIV---GLL--GPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIG--Y 83
Query: 1177 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS 1236
+PQ I L+ E+ + L++ K K + LD+ +LE ++
Sbjct: 84 LPQEA---------SIFRKLTVEDNIMAVLEIREKDLKKAERKEELDA----LLEEFHIT 130
Query: 1237 YLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDE 1281
+L + + LS GE++R+ +AR PKF +LDE
Sbjct: 131 HLRDSKAYS----------LSGGERRRVEIARALAANPKFILLDE 165
|
Length = 243 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 50/206 (24%), Positives = 84/206 (40%), Gaps = 34/206 (16%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGI 1174
+ + +I + + GP+G GKS++ R L + +V G + D + +
Sbjct: 18 KNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDV 77
Query: 1175 F-------YVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLK 1227
V Q+P ++ D I Y +LHG +K LD ++
Sbjct: 78 VELRRRVGMVFQKPNPFPMSIYDNIAY----------GPRLHGIKDK-----KELDEIVE 122
Query: 1228 TILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNA-- 1285
L+ L +EV + + LS G+QQRL +AR +P+ +LDE T+A
Sbjct: 123 ESLKKAALW-----DEVKDRLHDSALG-LSGGQQQRLCIARALAVEPEVLLLDEPTSALD 176
Query: 1286 --TSVDVEEQLYRLAKDMGITFVTSS 1309
+ +EE + L K I VT +
Sbjct: 177 PIATGKIEELIQELKKKYTIVIVTHN 202
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 30/174 (17%)
Query: 1113 KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAG 1169
K++ L+F I G+ + GPNG+GKS++ R+L G+ G +T +P A
Sbjct: 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLAR 76
Query: 1170 SGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTI 1229
G+ VPQ L E L + G+ + +T +++ + ++
Sbjct: 77 VAIGV--VPQ-------------FDNLDPEFTVRENLLVFGRYFGM--STREIEAVIPSL 119
Query: 1230 LEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECT 1283
LE RL A++ LS G ++RL +AR + P+ ILDE T
Sbjct: 120 LEFARLES---------KADVRVAL-LSGGMKRRLTLARALINDPQLLILDEPT 163
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 2e-04
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502
+L+++L+ + PG + I GPNG+GKS+LF+++ G SG I
Sbjct: 336 DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI 381
|
Length = 556 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 50/167 (29%), Positives = 75/167 (44%), Gaps = 41/167 (24%)
Query: 1122 EIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS-------LTKPSQHIDEEAGSGCGI 1174
EIV LL GPNG+GK++ F ++ GL SG +TK + + A G G
Sbjct: 27 EIV---GLL--GPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITK--LPMHKRARLGIG- 78
Query: 1175 FYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVR 1234
Y+PQ I L+ EE L L++ G +K + L+ +LE
Sbjct: 79 -YLPQEA---------SIFRKLTVEENILAVLEIRGLSKK------EREEKLEELLEEFH 122
Query: 1235 LSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDE 1281
+++L R+ LS GE++R+ +AR PKF +LDE
Sbjct: 123 ITHL--RKSKA--------SSLSGGERRRVEIARALATNPKFLLLDE 159
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 2e-04
Identities = 62/222 (27%), Positives = 91/222 (40%), Gaps = 50/222 (22%)
Query: 445 IEFSGVKVVT--PTGNVLVE---------NLTLKVEPGS-----NLLITGPNGSGKSSLF 488
IEF + LVE + +L+VE G + I GPNG GK++
Sbjct: 324 IEFE-ERPPRDESERETLVEYPDLTKKLGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFA 382
Query: 489 RVLGGLWPLVSGHIAKPGVGS-DLNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPL 546
++L G + KP G D +I Y PQ GT+ D L+ +T D
Sbjct: 383 KLLAG--------VLKPDEGEVDPELKISYKPQYIKPDYDGTVED-LLRSITDDLGSSYY 433
Query: 547 THGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606
E++K + LE LLD+ +LS GE QR+ +A +LDE +
Sbjct: 434 KS----EIIKPLQLERLLDKNV--------KDLSGGELQRVAIAACLSRDADLYLLDEPS 481
Query: 607 SAVTTDMEERF-CAKV--RAMGTSCITISHRPALVAFHDVVL 645
+ + D+E+R AK R T ALV HD+ +
Sbjct: 482 AHL--DVEQRLAVAKAIRRIAEEREAT-----ALVVDHDIYM 516
|
Length = 590 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 3e-04
Identities = 52/210 (24%), Positives = 80/210 (38%), Gaps = 40/210 (19%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGL--WPVVSGSLTKPSQHI-----DEEAG 1169
+ + + G+ + GPNGSGKS++ + G + V G + + I DE A
Sbjct: 21 KGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80
Query: 1170 SGCGIFYVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKT 1228
+ GIF Q P G T D + A+ ++ LK
Sbjct: 81 A--GIFLAFQYPVEIPGVTNSDFLRA----------AMNARRGARGILPEFIKE---LKE 125
Query: 1229 ILEGVRLSY-LLERE-EVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNAT 1286
E + L LER G S GE++R + +L +PK ILDE +
Sbjct: 126 KAELLGLDEEFLERYVNEG----------FSGGEKKRNEILQLLLLEPKLAILDEPDSGL 175
Query: 1287 SVD----VEEQLYRLA-KDMGITFVTSSQR 1311
+D V E + L + G+ +T QR
Sbjct: 176 DIDALKIVAEGINALREEGRGVLIITHYQR 205
|
Length = 251 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 3e-04
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
Query: 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTK 1159
I L + LL + ++ I PG + + G NG+GKS++ +++ G G +T
Sbjct: 1 IELENLSKTYGGKLLL-KDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW 59
Query: 1160 PSQHIDEEAGSGCGIFYVPQ 1179
GS I Y Q
Sbjct: 60 ---------GSTVKIGYFEQ 70
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 3e-04
Identities = 68/229 (29%), Positives = 95/229 (41%), Gaps = 61/229 (26%)
Query: 450 VKVVTPTGNVL-VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV- 507
V TP G+V V +L + G L I G +GSGKS L GL +A G
Sbjct: 20 VTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGL-------LAANGRI 72
Query: 508 -GSDL--NKEIFYVPQRPYTAVGTLRDQLIY-----PLTS--------DQEVEPLT-HGG 550
GS +EI +P++ + LR + I P+TS +Q +E L H G
Sbjct: 73 GGSATFNGREILNLPEK---ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKG 129
Query: 551 M---------VELLKNVDLEYLLDRYPPE--KEIN-WGDELSLGEQQRLGMARLFYHKPK 598
M V +L V + PE K + + E S G +QR+ +A +PK
Sbjct: 130 MSKAEAFEESVRMLDAVKM--------PEARKRMKMYPHEFSGGMRQRVMIAMALLCRPK 181
Query: 599 FAILDECTSA--VT------TDMEERFCAKVRAMGTSCITISHRPALVA 639
I DE T+A VT T + E R T+ I I+H +VA
Sbjct: 182 LLIADEPTTALDVTVQAQIMTLLNEL----KREFNTAIIMITHDLGVVA 226
|
Length = 330 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 38/164 (23%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
G +E++ L +E G L++ GP+G GK++L ++ G P G I G
Sbjct: 13 GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGK--------- 63
Query: 517 YVPQRPYTAVGTLR-----DQLIYPLTSDQE-VE-PLTHGGM---------VELLKNVDL 560
P G R ++ + P + Q+ V L G+ ++LK V L
Sbjct: 64 -----PVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGL 118
Query: 561 EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
E RY W +LS G++QR+G+AR P+ +LDE
Sbjct: 119 EGAEKRYI------W--QLSGGQRQRVGIARALAANPQLLLLDE 154
|
Length = 255 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 64/242 (26%), Positives = 105/242 (43%), Gaps = 40/242 (16%)
Query: 439 FSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV 498
F +YI G TP ++N++ ++E GS + + G GSGKS+L + L
Sbjct: 5 FENVDYIYSPG----TPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS 60
Query: 499 SGHIA------KPGVGS----DLNKEIFYVPQRPYTAV---GTLRDQLIYPLT---SDQE 542
SG I P G+ L K++ V Q P + L+D P S+ E
Sbjct: 61 SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDE 120
Query: 543 VEPLTHGGMVELLKNVDL-EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601
+ ++ LK V L E L+ + P ELS G+ +R+ +A + ++P+
Sbjct: 121 AKE----KALKWLKKVGLSEDLISKSP--------FELSGGQMRRVAIAGVMAYEPEILC 168
Query: 602 LDECTSAV----TTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGEGEWRVH 656
LDE + + +M + F +A G + I ++H VA + D VL L+ G+ H
Sbjct: 169 LDEPAAGLDPEGRKEMMQLFKDYQKA-GHTVILVTHNMDDVAEYADDVLVLE-HGKLIKH 226
Query: 657 DK 658
Sbjct: 227 AS 228
|
Length = 287 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-04
Identities = 57/225 (25%), Positives = 90/225 (40%), Gaps = 27/225 (12%)
Query: 1113 KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGC 1172
K + L++++ PG+ + GPNG+GK+++ +L G P SG +T + G G
Sbjct: 44 KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTL----LGRRFGKGE 99
Query: 1173 GIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEG 1232
IF + +R L ++ R +R + L G + L L
Sbjct: 100 TIFELRKRIGLVSSELHERF-----RVRETVRDVVLSGFFASIGIYQEDLT---AEDLA- 150
Query: 1233 VRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVE- 1291
+LLE A+ + LS GEQ+R+ +AR P+ ILDE +D+
Sbjct: 151 -AAQWLLELLGAKHLADRPFGS-LSQGEQRRVLIARALVKDPELLILDEPAQ--GLDLIA 206
Query: 1292 -EQLYR-----LAKDMGITFVTSSQRPALIP--FHSLELRLIDGE 1328
EQL A + + IP F L L +GE
Sbjct: 207 REQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHR-LLLKEGE 250
|
Length = 257 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 4e-04
Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 38/221 (17%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 1178
++ I G+ L +TGP+G+GK+++ ++L G+LT PS+ AG V
Sbjct: 21 VSLHIRKGEFLFLTGPSGAGKTTLLKLL-------YGALT-PSRGQVRIAG-----EDVN 67
Query: 1179 QRPYTCLGTLRDQI--IYP-----LSREEAELRALKLHGKGEKLVDTTNILDSYLKTILE 1231
+ L LR +I ++ R E AL L +G+K + + L
Sbjct: 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKK----EREIQRRVGAALR 123
Query: 1232 GVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVE 1291
V L + + LS GEQQR+ +AR + P + DE T D+
Sbjct: 124 QVGLE----------HKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLS 173
Query: 1292 EQLYRLAK---DMGITFVTSSQRPALIP-FHSLELRLIDGE 1328
E++ L K G T + ++ +L+ + L DG
Sbjct: 174 ERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 4e-04
Identities = 58/226 (25%), Positives = 89/226 (39%), Gaps = 63/226 (27%)
Query: 1118 QLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGC-- 1172
L F + G+ + + GP+GSGKS++ R+L L P+ G + + H+ G
Sbjct: 18 GLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77
Query: 1173 ----------GIFYVPQR----PYTCLGTLRDQIIYP-----LSREEAELRALKLHGKGE 1213
I V Q P+ + L + P ++R EAE RA++L
Sbjct: 78 DEKHLRQMRNKIGMVFQSFNLFPHKTV--LDNVTEAPVLVLGMARAEAEKRAMEL----- 130
Query: 1214 KLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHK 1273
L+ V L+ D + LS G+QQR+ +AR +
Sbjct: 131 ----------------LDMVGLA----------DKADHMPAQLSGGQQQRVAIARALAMR 164
Query: 1274 PKFGILDECTNATSVD-VEEQL---YRLAK--DMGITFVTSSQRPA 1313
PK + DE T+A + V E L RLA D+ + VT A
Sbjct: 165 PKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFA 210
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 4e-04
Identities = 49/192 (25%), Positives = 75/192 (39%), Gaps = 22/192 (11%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520
+ N++L V G + G +G+GKS+L R + L SG + G
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 521 RPYTAV----------GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPE 570
R + T+ + PL D + + ELL V L D YP
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-- 138
Query: 571 KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV----TTDMEERFCAKVRAMGT 626
LS G++QR+ +AR PK + DE TSA+ T + E R +G
Sbjct: 139 ------SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGL 192
Query: 627 SCITISHRPALV 638
+ + I+H +V
Sbjct: 193 TILLITHEMDVV 204
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 47/177 (26%), Positives = 74/177 (41%), Gaps = 28/177 (15%)
Query: 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
N IE + G ++ L+L + GS + GPNG+GKS+L L G++ G
Sbjct: 2 DNIIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGR 61
Query: 502 IAKPGVGSDLNKEIFY--------VPQRPYTAV--GTLRDQLIY-PLT---SDQEVEPLT 547
+ +G ++N E V Q P V T+ D + + P+ EVE
Sbjct: 62 VKV--MGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRV 119
Query: 548 HGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
E LK V + D+ P LS G+++R+ +A + P +LDE
Sbjct: 120 E----EALKAVRMWDFRDKPP--------YHLSYGQKKRVAIAGVLAMDPDVIVLDE 164
|
Length = 274 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 4e-04
Identities = 47/186 (25%), Positives = 71/186 (38%), Gaps = 27/186 (14%)
Query: 464 LTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523
L V G + I GP+G+GKS+L ++ G SG I GV D +RP
Sbjct: 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGV--DHTASPPA--ERPV 73
Query: 524 TAVGTLRDQLIYPLTSDQEVEPLTHGG----------MVELLKNVDLEYLLDRYPPEKEI 573
+ + + L LT Q + G + V L L R P
Sbjct: 74 SMLFQ-ENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG---- 128
Query: 574 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV----RAMGTSCI 629
ELS G++QR+ +AR + +LDE SA+ + A V + +
Sbjct: 129 ----ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLL 184
Query: 630 TISHRP 635
++H P
Sbjct: 185 MVTHHP 190
|
Length = 231 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 4e-04
Identities = 50/172 (29%), Positives = 73/172 (42%), Gaps = 35/172 (20%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG--VGSDLNK- 513
G L+ L+L G + G NGSGKS+L ++LG P G I + S +K
Sbjct: 23 GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKA 82
Query: 514 ---EIFYVPQRPYTAVGTLRDQLI----YP---------LTSDQEVEPLTHGGMVELLKN 557
++ Y+PQ+ A G +L+ YP ++VE E +
Sbjct: 83 FARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVE--------EAISL 134
Query: 558 VDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
V L+ L R D LS GE+QR +A L + +LDE TSA+
Sbjct: 135 VGLKPLAHRLV--------DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSAL 178
|
Length = 265 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 5e-04
Identities = 52/206 (25%), Positives = 83/206 (40%), Gaps = 31/206 (15%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176
+ ++ E+ G ++ GP GSGKS + + G SG + + I I Y
Sbjct: 16 KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISY 75
Query: 1177 VPQRPYTCLGTLRDQIIYP-LSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRL 1235
VPQ + ++P ++ + LK + VD I + + I E + +
Sbjct: 76 VPQ----------NYALFPHMTVYKNIAYGLKK-----RKVDKKEI-ERKVLEIAEMLGI 119
Query: 1236 SYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLY 1295
+LL R+ + LS GEQQR+ +AR PK +LDE +A V +E+L
Sbjct: 120 DHLLNRKP----------ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLR 169
Query: 1296 RLAKDMGITFVTSSQRPALIPFHSLE 1321
K + F L H E
Sbjct: 170 EELKKIRKEFGV----TVLHVTHDFE 191
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 5e-04
Identities = 48/216 (22%), Positives = 86/216 (39%), Gaps = 46/216 (21%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHID----------- 1165
+ ++ EI + GP+G GKS+ R+ + ++ + + ID
Sbjct: 20 KGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79
Query: 1166 EEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSY 1225
+E G+ + QRP ++ + + Y L+++G V +
Sbjct: 80 DELRKNVGMVF--QRPNPFPKSIFENVAY----------GLRVNG-----VKDNAFIRQR 122
Query: 1226 LKTILEGVRLSYLLEREEVGWDANLNWED----ILSLGEQQRLGMARLFFHKPKFGILDE 1281
++ L+G L WD + LS G+QQRL +AR P ++DE
Sbjct: 123 VEETLKGAAL----------WDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDE 172
Query: 1282 CTNA----TSVDVEEQLYRLAKDMGITFVTSSQRPA 1313
+A ++ VEE ++ L KD I VT + + A
Sbjct: 173 PASALDPISTAKVEELIHELKKDYTIVIVTHNMQQA 208
|
Length = 250 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 5e-04
Identities = 47/208 (22%), Positives = 89/208 (42%), Gaps = 32/208 (15%)
Query: 1112 QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSG 1171
+K + +T +I + + GP+G GK+++ R + + + G + + G
Sbjct: 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFK-----G 69
Query: 1172 CGIFYVPQRPYTCLGTLRDQI--------IYPLSREEAELRALKLHGKGEKLVDTTNILD 1223
I+ P + R ++ +P+S + ++HG K + LD
Sbjct: 70 QDIY----DPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSK-----HKLD 120
Query: 1224 SYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECT 1283
++ L+ L +EV + N LS G+QQRL +AR +P+ +LDE T
Sbjct: 121 RIVEESLKKAAL-----WDEVKSELNKPGTR-LSGGQQQRLCIARALAVEPEVILLDEPT 174
Query: 1284 NA----TSVDVEEQLYRLAKDMGITFVT 1307
+A + +E+ L L+++ I VT
Sbjct: 175 SALDPIATQRIEKLLEELSENYTIVIVT 202
|
Length = 250 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 5e-04
Identities = 54/220 (24%), Positives = 85/220 (38%), Gaps = 35/220 (15%)
Query: 1109 TPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS-------LTKPS 1161
TP +K L+ EI G + V G NG+GKS++ + G SG +TK S
Sbjct: 15 TPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKS 74
Query: 1162 QHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNI 1221
+ A +F P T+ + + SR + R L E+
Sbjct: 75 VA--KRANLLARVFQDPLAGTAPELTIEENLALAESR--GKKRGL-SSALNERR------ 123
Query: 1222 LDSYLKTILE-GVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILD 1280
S+ + + G+ L L +LS G++Q L + H PK +LD
Sbjct: 124 RSSFRERLARLGLGLENRLSDR----------IGLLSGGQRQALSLLMATLHPPKILLLD 173
Query: 1281 ECTNA----TSVDVEEQLYRLAKDMGIT--FVTSSQRPAL 1314
E T A T+ V E ++ ++ +T VT + AL
Sbjct: 174 EHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDAL 213
|
Length = 263 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 5e-04
Identities = 52/195 (26%), Positives = 84/195 (43%), Gaps = 35/195 (17%)
Query: 1133 GPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQI 1192
GP+G GKS+V R L + V+ G+ + +D E G G+ V R + R
Sbjct: 37 GPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNP 96
Query: 1193 IYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNW 1252
+S + + LKL+G K LD ++ L G ANL W
Sbjct: 97 FPTMSIRDNVVAGLKLNGVRNK-----KDLDELVEKSLRG---------------ANL-W 135
Query: 1253 EDI----------LSLGEQQRLGMARLFFHKPKFGILDECTNA----TSVDVEEQLYRLA 1298
++ LS G+QQRL +AR +P ++DE +A +++ +E+ + L
Sbjct: 136 NEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK 195
Query: 1299 KDMGITFVTSSQRPA 1313
+D I VT + + A
Sbjct: 196 QDYTIVIVTHNMQQA 210
|
Length = 258 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 5e-04
Identities = 55/208 (26%), Positives = 99/208 (47%), Gaps = 33/208 (15%)
Query: 1114 LLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCG 1173
++++ + +I G+ ++ GP+G GKS++ R++ GL + SG L + +++ + G
Sbjct: 17 VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERG 76
Query: 1174 IFYVPQRPYTCLGTLRDQIIYP-LSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEG 1232
+ V Q Y +YP LS E LKL G I + + + E
Sbjct: 77 VGMVFQS-YA---------LYPHLSVAENMSFGLKLAG-----AKKEEI-NQRVNQVAEV 120
Query: 1233 VRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDE-CTN---ATSV 1288
++L++LL+R+ LS G++QR+ + R +P +LDE +N A V
Sbjct: 121 LQLAHLLDRK----------PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRV 170
Query: 1289 DVEEQLYRLAKDMGIT--FVTSSQRPAL 1314
+ ++ RL K +G T +VT Q A+
Sbjct: 171 QMRIEISRLHKRLGRTMIYVTHDQVEAM 198
|
Length = 369 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 6e-04
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 1256 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQ----LYRLAKDMGITF--VTSS 1309
LS G+QQR+ +AR +KPK +LDE +A + +Q L L + +GITF VT
Sbjct: 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHD 204
Query: 1310 QRPAL 1314
Q AL
Sbjct: 205 QEEAL 209
|
Length = 375 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 6e-04
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSL 1157
L F + G++LLV G NG+GK+++ RVL GL V SG +
Sbjct: 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQI 68
|
Length = 214 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 6e-04
Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 26/172 (15%)
Query: 1113 KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSG- 1171
K + L+F + G+ + GPNG+GKS++ R++ G+ +G +T + A
Sbjct: 54 KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLAR 113
Query: 1172 CGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILE 1231
I VPQ L E L + G+ + +T +++ + ++LE
Sbjct: 114 ARIGVVPQ-------------FDNLDLEFTVRENLLVFGRYFGM--STREIEAVIPSLLE 158
Query: 1232 GVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECT 1283
R LE + A+ D LS G ++RL +AR + P+ ILDE T
Sbjct: 159 FAR----LESK-----ADARVSD-LSGGMKRRLTLARALINDPQLLILDEPT 200
|
Length = 340 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 6e-04
Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 17/206 (8%)
Query: 1112 QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSG 1171
+K + ++ +I + GP+G GKS+ R L + ++ + I+ E
Sbjct: 24 EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYE 83
Query: 1172 CGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILE 1231
+ V R + + +P+S + ++HG +K D ++++ L++
Sbjct: 84 PDVDVVELRKNVGM-VFQKPNPFPMSIYDNVAYGPRIHGANKK--DLDGVVENALRSAAL 140
Query: 1232 GVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNA----TS 1287
S L+ + LS G+QQRL +AR KPK + DE T+A ++
Sbjct: 141 WDETSDRLKSPALS----------LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPIST 190
Query: 1288 VDVEEQLYRLAKDMGITFVTSSQRPA 1313
+E+ + L KD I VT + + A
Sbjct: 191 ARIEDLIMNLKKDYTIVIVTHNMQQA 216
|
Length = 258 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 6e-04
Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 42/165 (25%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---------------AKP 505
V ++L V+ G + + GPNG+GK++ F ++ GL SG I A+
Sbjct: 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARL 75
Query: 506 GVGSDLNKEIFYVPQRPYTAVG-TLRDQL-----IYPLTSDQEVEPLTHGGMVELLKNVD 559
G+G Y+PQ T+ + + I L+ + E L ELL+
Sbjct: 76 GIG--------YLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKL-----EELLEEFH 122
Query: 560 LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
+ +L LS GE++R+ +AR PKF +LDE
Sbjct: 123 ITHLRKSK--------ASSLSGGERRRVEIARALATNPKFLLLDE 159
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 7e-04
Identities = 57/248 (22%), Positives = 96/248 (38%), Gaps = 49/248 (19%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG--HI 502
I+ S + V +++ + L V GS + + GPNG+GK++L R + G +G +
Sbjct: 4 IDVSDL-SVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLV 62
Query: 503 AKPGVGS----DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV 558
A V + ++ + VPQ T L+ + +V + G
Sbjct: 63 AGDDVEALSARAASRRVASVPQ------DT-------SLSFEFDVRQVVEMGRTPHRSRF 109
Query: 559 DLEYLLDRYPPEKEINWGD----------ELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
D DR E+ + LS GE+QR+ +AR +LDE T++
Sbjct: 110 DTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTAS 169
Query: 609 VTTDMEERFCAKVRAMGTSCITISHRPALVAFHD----------VVLSLDGEGEWRVHDK 658
+ + + R VR + + A+ A HD +VL DG RV
Sbjct: 170 LDINHQVRTLELVRRLVD-----DGKTAVAAIHDLDLAARYCDELVLLADG----RVRAA 220
Query: 659 RDGSSVVT 666
+ V+T
Sbjct: 221 GPPADVLT 228
|
Length = 402 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 7e-04
Identities = 48/196 (24%), Positives = 79/196 (40%), Gaps = 34/196 (17%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA---------KPGVGSDL 511
++++ L V PG + G NG+GKS+L +VL G+ G I + + L
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80
Query: 512 NKEIFY----------VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE 561
I Y V + Y + + +E+ +L V L+
Sbjct: 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAA----MMLLRVGLK 136
Query: 562 YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCA-- 619
LD EK N LS+ +Q L +A+ K I+DE TS++T +
Sbjct: 137 VDLD----EKVAN----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIM 188
Query: 620 -KVRAMGTSCITISHR 634
++R GT+ + ISH+
Sbjct: 189 NQLRKEGTAIVYISHK 204
|
Length = 510 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 7e-04
Identities = 12/40 (30%), Positives = 26/40 (65%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502
+++ ++ G + I G NG+GKS+L +++ G++ SG +
Sbjct: 45 DISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV 84
|
Length = 249 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 8e-04
Identities = 53/226 (23%), Positives = 91/226 (40%), Gaps = 49/226 (21%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 1178
++ I G+ + + G +GSGKS++ +L G L P+ G
Sbjct: 24 VSLSIGKGEIVAIVGSSGSGKSTLLHLL--------GGLDNPTS----------GEVLFN 65
Query: 1179 QRPYTCLGTLRDQIIYPLSREEAELRALKL------HGKGEKLVDTT---NILDSYL--- 1226
+ + L S E A+LR KL H L D T N+ L
Sbjct: 66 GQSLSKLS----------SNERAKLRNKKLGFIYQFH---HLLPDFTALENVAMPLLIGK 112
Query: 1227 KTILEGVRLSYLLEREEVGWDANLNWE-DILSLGEQQRLGMARLFFHKPKFGILDECT-- 1283
K++ E +Y + E+VG + +N LS GE+QR+ +AR ++P + DE T
Sbjct: 113 KSVKEAKERAYEM-LEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGN 171
Query: 1284 --NATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDG 1327
N + + + + L +++ +F+ + L L + DG
Sbjct: 172 LDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDG 217
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 8e-04
Identities = 56/219 (25%), Positives = 94/219 (42%), Gaps = 26/219 (11%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
I V P G +EN+ L ++ G + I G NGSGKS+L L GL G +
Sbjct: 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLV 61
Query: 505 PGVGS-------DLNKEIFYVPQRPYTA-VG-TLRDQLIYPLTSDQEVEPLTHGGMVELL 555
G+ + + K + V Q P T VG T+ + L + + + P +E+
Sbjct: 62 SGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFG-PENLCLPP------IEIR 114
Query: 556 KNVDL---EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTD 612
K VD E L++Y LS G+ Q + +A + +P+ I DE TS + D
Sbjct: 115 KRVDRALAEIGLEKYRHRSP----KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPD 170
Query: 613 MEERFCAKVRAM---GTSCITISHRPALVAFHDVVLSLD 648
+++ + G + + I+H + D ++ +D
Sbjct: 171 SGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMD 209
|
Length = 274 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 8e-04
Identities = 52/156 (33%), Positives = 73/156 (46%), Gaps = 24/156 (15%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRV-LGGLWPLVSGHIAKPGVGSDLNKEI 515
G LV++ + +V+ G + + GPNG GK++L ++ LG L SG I G+ L E+
Sbjct: 331 GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA-DSGRIH---CGTKL--EV 384
Query: 516 FYVPQRPYTAV----GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLD-RYPPE 570
Y Q + A T+ D L QEV MV L YL D + P+
Sbjct: 385 AYFDQ--HRAELDPEKTVMDNLA---EGKQEV-------MVNGRPRHVLGYLQDFLFHPK 432
Query: 571 KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606
+ + LS GE+ RL +ARLF ILDE T
Sbjct: 433 RAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPT 468
|
Length = 635 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 9e-04
Identities = 52/220 (23%), Positives = 86/220 (39%), Gaps = 64/220 (29%)
Query: 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVL--RGLWPVVSGSL 1157
++ + + S K L + ++ + PG+ + GP+G+GKS++ L R VSG +
Sbjct: 9 LTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEV 68
Query: 1158 TKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYP-LSREEAELRALKLHGKGEKLV 1216
+ +D+ + I YVPQ D I++P L+ E + A KL G
Sbjct: 69 LINGRPLDKRSFRKI-IGYVPQ----------DDILHPTLTVRETLMFAAKLRG------ 111
Query: 1217 DTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKF 1276
LS GE++R+ +A P
Sbjct: 112 ---------------------------------------LSGGERKRVSIALELVSNPSL 132
Query: 1277 GILDECTN----ATSVDVEEQLYRLAKDMGITFVTSSQRP 1312
LDE T+ ++++ V L RLA D G T + S +P
Sbjct: 133 LFLDEPTSGLDSSSALQVMSLLRRLA-DTGRTIICSIHQP 171
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 9e-04
Identities = 53/212 (25%), Positives = 80/212 (37%), Gaps = 33/212 (15%)
Query: 437 NYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP 496
F + +E V V + L ++ G L + G NGSGKS+L +L GL+
Sbjct: 315 QAFPDWQTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ 374
Query: 497 LVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGT---LRDQLIYPLTSDQEVEP------LT 547
SG I G + Y ++ ++AV T L DQL+ P + P L
Sbjct: 375 PQSGEILLDGKPVTAEQPEDY--RKLFSAVFTDFHLFDQLLGP--EGKPANPALVEKWLE 430
Query: 548 HGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
M L+ D + LS G+++RL + + +LDE
Sbjct: 431 RLKMAHKLELEDGRISNLK------------LSKGQKKRLALLLALAEERDILLLDEW-- 476
Query: 608 AVTTD-MEERFCAKV-----RAMGTSCITISH 633
A D R +V + MG + ISH
Sbjct: 477 AADQDPHFRREFYQVLLPLLQEMGKTIFAISH 508
|
Length = 547 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 9e-04
Identities = 58/238 (24%), Positives = 88/238 (36%), Gaps = 60/238 (25%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV----GSDLN 512
++ +L+L++EPG + G NG+GKS+L + L G G A G LN
Sbjct: 13 HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT---GGGAPRGARVTGDVTLN 69
Query: 513 KEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYP---- 568
E P A R + + P Q +P E++ LL RYP
Sbjct: 70 GE----PLAAIDAPRLARLRAVLP----QAAQPAFAFSAREIV-------LLGRYPHARR 114
Query: 569 ------PEKEINWG---------------DELSLGEQQRLGMARLFYH---------KPK 598
+ EI W LS GE R+ AR+ P+
Sbjct: 115 AGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPR 174
Query: 599 FAILDECTSAVTTDMEERFCAKVRAMG----TSCITISHRPALVAFHDVVLSLDGEGE 652
+ +LDE T+A+ + R VR + + I H P L A H +++ +G
Sbjct: 175 YLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGA 232
|
Length = 272 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 46/216 (21%), Positives = 79/216 (36%), Gaps = 55/216 (25%)
Query: 1113 KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGC 1172
K I G+ ++ G +GSGKS+ R+L L +G + ++I +++
Sbjct: 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVEL 65
Query: 1173 G------IFYVPQR----PYTCLGTLRDQIIYPLS-----REEAELRALKLHGKGEKLVD 1217
I V Q+ P+ T+ +E + +AL+L KLV
Sbjct: 66 REVRRKKIGMVFQQFALFPHM---TILQNTSLGPELLGWPEQERKEKALELL----KLVG 118
Query: 1218 TTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFG 1277
Y D LS G QQR+G+AR +P
Sbjct: 119 LEEYEHRY---------------------------PDELSGGMQQRVGLARALAAEPDIL 151
Query: 1278 ILDECTNA----TSVDVEEQLYRLAKDMG--ITFVT 1307
++DE +A ++++L +L + I F+T
Sbjct: 152 LMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFIT 187
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT 1158
I L P + + EI G+ + + GP+G+GKS++ R L GL SG +
Sbjct: 3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEIL 62
|
Length = 258 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 49/216 (22%), Positives = 84/216 (38%), Gaps = 63/216 (29%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176
+ ++ G+ ++ G +GSGKS++ R+L L G +
Sbjct: 45 NDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEIL------------------ 86
Query: 1177 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYL----KTILEG 1232
+ + I LS AELR L+ + + S+ +T+LE
Sbjct: 87 -----------VDGKDIAKLSA--AELRELRRK-------KISMVFQSFALLPHRTVLEN 126
Query: 1233 VRLSYLL------EREEVGWDA----NL-NWEDI----LSLGEQQRLGMARLFFHKPKFG 1277
V + EREE +A L + D LS G QQR+G+AR + P
Sbjct: 127 VAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDIL 186
Query: 1278 ILDECTNA----TSVDVEEQLYRLAKDMG--ITFVT 1307
++DE +A +++++L L + I F+T
Sbjct: 187 LMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFIT 222
|
Length = 386 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 0.001
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 16/110 (14%)
Query: 1098 DSISFSKLDI-ITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS 1156
D + FS + +TP K ++F++ G+ L V G GSGKSS+ ++ G
Sbjct: 427 DGLFFSNFSLYVTPVLK----NISFKLEKGQLLAVAGSTGSGKSSLLMMIMGE------- 475
Query: 1157 LTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRAL 1206
+PS+ + +G I + PQ + GT++D II+ LS +E ++
Sbjct: 476 -LEPSEGKIKHSGR---ISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSV 521
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 0.001
Identities = 45/204 (22%), Positives = 79/204 (38%), Gaps = 30/204 (14%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 1178
L+ EI G+ L + G +G GK+++ R + G K + A + + + P
Sbjct: 24 LSLEIEAGELLALIGKSGCGKTTLLRAIAG--------FVKAAGLTGRIAIADRDLTHAP 75
Query: 1179 QRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYL 1238
++ ++P + E + A L + D + LK + G
Sbjct: 76 PHKRGLALLFQNYALFPHLKVEDNV-AFGLRAQKMPKADIAERVADALKLVGLG------ 128
Query: 1239 LEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSV----DVEEQL 1294
DA + LS G QQR+ +AR +P +LDE +A ++ E++
Sbjct: 129 --------DAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEI 180
Query: 1295 YRLAK---DMGITFVTSSQRPALI 1315
L + ++ I VT Q AL
Sbjct: 181 AALHEELPELTILCVTHDQDDALT 204
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.001
Identities = 50/194 (25%), Positives = 81/194 (41%), Gaps = 31/194 (15%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA- 503
I+ GV + V+V +L+ + G + GPNG+GKS++ R+L G+ G I
Sbjct: 5 IDLVGVSK-SYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITV 63
Query: 504 ----KPGVGSDLNKEIFYVPQ-----RPYTAVGTLRDQLI----YPLTSDQEVEPLTHGG 550
P I VPQ +T R+ L+ Y S +E+E +
Sbjct: 64 LGEPVPSRARLARVAIGVVPQFDNLDPEFTV----RENLLVFGRYFGMSTREIEAV---- 115
Query: 551 MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 610
+ LL+ LE D LS G ++RL +AR + P+ ILDE T+ +
Sbjct: 116 IPSLLEFARLESKADVRVA--------LLSGGMKRRLTLARALINDPQLLILDEPTTGLD 167
Query: 611 TDMEERFCAKVRAM 624
++R++
Sbjct: 168 PHARHLIWERLRSL 181
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 0.001
Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 48/195 (24%)
Query: 1125 PGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFYVPQRPY 1182
PG + V G NG+GKS++ R++ G+ + + EA G + Y+PQ P
Sbjct: 32 PGAKIGVLGLNGAGKSTLLRIMAGV-----------DKEFEGEARPAPGIKVGYLPQEPQ 80
Query: 1183 -----TCLGTLR-------------DQIIYPLSREEAELRAL-KLHGKGEKLVDTTNI-- 1221
T + ++I + +A+ AL G+ ++++D +
Sbjct: 81 LDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWD 140
Query: 1222 LDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDE 1281
LDS L+ ++ +R WDA + LS GE++R+ + RL KP +LDE
Sbjct: 141 LDSQLEIAMDALRCP--------PWDAKV---TKLSGGERRRVALCRLLLEKPDMLLLDE 189
Query: 1282 CTN---ATSVDVEEQ 1293
TN A SV EQ
Sbjct: 190 PTNHLDAESVAWLEQ 204
|
Length = 556 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 46/166 (27%), Positives = 71/166 (42%), Gaps = 30/166 (18%)
Query: 464 LTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523
++ V PG + + GPNG+GKS+LF +L L+ G I+ G DL + P+
Sbjct: 20 VSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISV--AGHDLRRA----PRAAL 73
Query: 524 TAVGTLRDQ--LIYPLTSDQEV----------EPLTHGGMVELLKNVDL-EYLLDRYPPE 570
+G + Q L L+ Q + + ELL + L E D+
Sbjct: 74 ARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLARLGLAERADDKV--- 130
Query: 571 KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 616
EL+ G ++R+ +AR H+P +LDE T V D R
Sbjct: 131 ------RELNGGHRRRVEIARALLHRPALLLLDEPT--VGLDPASR 168
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.001
Identities = 55/208 (26%), Positives = 83/208 (39%), Gaps = 62/208 (29%)
Query: 1133 GPNGSGKSSVFRVLR---GLWP--VVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGT 1187
GP+G GKS+ R L L P ++G+++ Q+I Y P
Sbjct: 38 GPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNI-----------YAPNEDVV---Q 83
Query: 1188 LRDQI--------IYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLL 1239
LR Q+ +P S E + L+L G +K V LD ++T L+ +
Sbjct: 84 LRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAV-----LDEAVETSLKQAAI---- 134
Query: 1240 EREEVGWDANLNWEDI----------LSLGEQQRLGMARLFFHKPKFGILDECTNA---- 1285
W+++ LS G+QQR+ +AR+ KP +LDE T+A
Sbjct: 135 ------------WDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPI 182
Query: 1286 TSVDVEEQLYRLAKDMGITFVTSSQRPA 1313
+S +E L L I VT S A
Sbjct: 183 SSTQIENMLLELRDQYTIILVTHSMHQA 210
|
Length = 252 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.001
Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 16/163 (9%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS-----GHIAKPGVG------ 508
+++N+ L + S + GP+G GKS+ R L + L+ GHI GV
Sbjct: 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77
Query: 509 --SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 566
+L K++ V Q+P ++ D + Y L E + VE +++ L D
Sbjct: 78 DVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVE--ESLKAAALWDE 135
Query: 567 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
+K LS G+QQRL +AR P+ ++DE SA+
Sbjct: 136 V-KDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSAL 177
|
Length = 250 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 53/204 (25%), Positives = 83/204 (40%), Gaps = 66/204 (32%)
Query: 1133 GPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY---------------- 1176
GP+GSGKS+ R SL + + ID +G I Y
Sbjct: 53 GPSGSGKSTYLR-----------SLNRMNDTIDIARVTG-QILYRGIDINRKEINVYEMR 100
Query: 1177 -----VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILE 1231
V QRP ++ + I + AL+ G +K +LD ++T L+
Sbjct: 101 KHIGMVFQRPNPFAKSIYENITF----------ALERAGVKDK-----KVLDEIVETSLK 145
Query: 1232 GVRLSYLLEREEVGWDA---NLNWEDI-LSLGEQQRLGMARLFFHKPKFGILDECTNA-- 1285
L WD +L+ + LS G+QQRL +AR KP ++DE +A
Sbjct: 146 QAAL----------WDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALD 195
Query: 1286 --TSVDVEEQLYRLAKDMGITFVT 1307
+++ +EE ++ L K+ I VT
Sbjct: 196 PISTMQLEETMFELKKNYTIIIVT 219
|
Length = 267 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 31/161 (19%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520
++ ++ +E G + GPNG+GK++ ++L GL SG + G+ ++ F
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKF---L 93
Query: 521 RPYTAVGTLRDQL---------------IYPLTSDQEVEPLTHGGMVELLKNVDLEYLLD 565
R V + QL IY L + + L + ELL DLE LLD
Sbjct: 94 RRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDE--LSELL---DLEELLD 148
Query: 566 RYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606
P + +LSLG++ R +A H+P+ LDE T
Sbjct: 149 T--PVR------QLSLGQRMRAEIAAALLHEPEILFLDEPT 181
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 0.001
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 575 WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME---ERFCAKVRAMG-TSCIT 630
+G LS G++QR+ +AR +PK +LDE TS++ ++ E E+ ++ + IT
Sbjct: 1355 YGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIIT 1414
Query: 631 ISHRPALVAFHDVVL 645
I+HR A + D ++
Sbjct: 1415 IAHRIASIKRSDKIV 1429
|
Length = 1466 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 49/199 (24%), Positives = 77/199 (38%), Gaps = 41/199 (20%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG----------------HIAK 504
+ +L+ V+PG ++ GPNG+GK++L V+ G G IA+
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80
Query: 505 PGVGSDLNKEIFY----VPQRPYTAVG---TLRDQLIYPLTSDQEVEPLTHGGMVELLKN 557
G+G K + V + A+ ++ L L +++ + ELL
Sbjct: 81 AGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRR------IDELLAT 134
Query: 558 VDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF 617
+ L DR LS G++Q L + L PK +LDE A TD E
Sbjct: 135 IGLGDERDRL--------AALLSHGQKQWLEIGMLLAQDPKLLLLDEPV-AGMTDAETEK 185
Query: 618 CA---KVRAMGTSCITISH 633
A K A S + + H
Sbjct: 186 TAELLKSLAGKHSILVVEH 204
|
Length = 249 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.002
Identities = 49/191 (25%), Positives = 79/191 (41%), Gaps = 27/191 (14%)
Query: 1110 PSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQH--IDEE 1167
P + L +I PG+ + + GP+GSGKS++ ++L+ L+ G + I +
Sbjct: 467 PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADP 526
Query: 1168 AGSGCGIFYVPQRPYTCLGTLRDQIIY--PLSREEAELRALKLHGKGEKLVDTTNILDSY 1225
A + V Q ++RD I P + E + A KL G +
Sbjct: 527 AWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHD------------ 574
Query: 1226 LKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNA 1285
+ + Y E E G AN LS G++QR+ +AR P+ I DE T+A
Sbjct: 575 ---FISELPQGYNTEVGEKG--AN------LSGGQRQRIAIARALVGNPRILIFDEATSA 623
Query: 1286 TSVDVEEQLYR 1296
+ E + R
Sbjct: 624 LDYESEALIMR 634
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.002
Identities = 61/247 (24%), Positives = 110/247 (44%), Gaps = 56/247 (22%)
Query: 1092 NSTDYQDSISFSKLDII--TPSQKLLA-RQLTFEIVPGKSLLVTGPNGSGKS----SVFR 1144
+ D +D ++ L+I QK+ A R L+F + G++L + G +GSGKS ++ R
Sbjct: 5 DELDARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMR 64
Query: 1145 VLRGLWPVVSGS---LTKPSQHI---DEEAGS------GCGIFYVPQRPYTCLGTLRDQI 1192
+L +V L + S+ + E++ + G + + Q P T L
Sbjct: 65 LLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNP----- 119
Query: 1193 IYPLSREEAELRALKLH---GKGEKLVDTTNILDSYLKTILEGVRL---SYLLEREEVGW 1246
++ + + AE +++LH + E +V+ K +L+ VR+ +L R
Sbjct: 120 VFTVGEQIAE--SIRLHQGASREEAMVEA--------KRMLDQVRIPEAQTILSR----- 164
Query: 1247 DANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAK------D 1300
+ LS G +QR+ +A +P I DE T A V ++ Q+ +L K
Sbjct: 165 -----YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMS 219
Query: 1301 MGITFVT 1307
MG+ F+T
Sbjct: 220 MGVIFIT 226
|
Length = 623 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 0.002
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 1256 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLY---RLAKDMGITFV 1306
LS+GE+Q + +AR + ILDE T A + E+L+ R + G+ +
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVI 136
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 51/178 (28%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--------AGS 1170
++ + G+ + + GPNG+GK++ F ++ G+ P +G++ ID+E A +
Sbjct: 22 VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNII-----IDDEDISLLPLHARA 76
Query: 1171 GCGIFYVPQRP--YTCLGTLRD-----QIIYPLSREEAELRALKLHGKGEKLVDTTNILD 1223
GI Y+PQ + L + QI LS E+ E RA +L
Sbjct: 77 RRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANEL--------------- 121
Query: 1224 SYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDE 1281
+E + +L R+ +G LS GE++R+ +AR PKF +LDE
Sbjct: 122 ------MEEFHIEHL--RDSMG--------QSLSGGERRRVEIARALAANPKFILLDE 163
|
Length = 241 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 1257 SLGEQQRLGMARLFFHKPKFGILDECTNATS-VDVEE--QLYRLAKDMGITFVTSS 1309
SLG +QRLG+A + PK ILDE TN + ++E +L R + GIT + SS
Sbjct: 126 SLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSS 181
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 1113 KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT 1158
KLL L+F++ PG + V GPNG+GKS++FR++ G SG++
Sbjct: 335 KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIK 380
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.002
Identities = 58/241 (24%), Positives = 90/241 (37%), Gaps = 63/241 (26%)
Query: 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL--WPLVSG--- 500
+F G +V+ +N++ +E G L I G +G+GKS L VL G+ + SG
Sbjct: 9 KFDGKEVL--------KNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII 60
Query: 501 -HIAK-----------------PGVGSDLNKEI--FYVPQRPYTAVGTLRD----QLIYP 536
H+A P G L E F+ R Q +
Sbjct: 61 YHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFA 120
Query: 537 LTSDQEV-----EPLTHGG---------MVELLKNVDLEYLLDRYPPEKEINWGDELSLG 582
L D V E L G V+L++ V L + + + +LS G
Sbjct: 121 LYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRI--------THIARDLSGG 172
Query: 583 EQQRLGMARLFYHKPKFAILDECTSAV---TTDM-EERFCAKVRAMGTSCITISHRPALV 638
E+QR+ +AR +P + DE T + T + V+A G S + SH P ++
Sbjct: 173 EKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVI 232
Query: 639 A 639
Sbjct: 233 E 233
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.002
Identities = 54/220 (24%), Positives = 90/220 (40%), Gaps = 67/220 (30%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSG------------SLTKPSQHI 1164
+ + +I K + GP+G GKS++ R L + ++ G ++ P +
Sbjct: 24 KDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83
Query: 1165 DE---EAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNI 1221
E G V Q+P ++ D + Y L+LHG +K +D I
Sbjct: 84 VELRRRVG------MVFQKPNPFPMSIYDNVAY----------GLRLHGIKDKELD--EI 125
Query: 1222 LDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI----------LSLGEQQRLGMARLFF 1271
++S LK A L W+++ LS G+QQRL +AR
Sbjct: 126 VESSLK-------------------KAAL-WDEVKDRLHKSALGLSGGQQQRLCIARALA 165
Query: 1272 HKPKFGILDECTNA----TSVDVEEQLYRLAKDMGITFVT 1307
KP+ ++DE T+A +++ +EE + L K I VT
Sbjct: 166 VKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVT 205
|
Length = 253 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 1099 SISFSKLDII----TPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVS 1154
SI F +D I TP +K ++FE+ G + + G GSGKS++ + L S
Sbjct: 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSS 61
Query: 1155 GSLTKPSQHIDEEAGS 1170
G++T HI E G+
Sbjct: 62 GTITIAGYHITPETGN 77
|
Length = 287 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 445 IEFSGVKVV----TPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG 500
I S TP + L+L++ G + + G NG+GKS+L + G SG
Sbjct: 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSG 61
Query: 501 HI 502
I
Sbjct: 62 QI 63
|
Length = 263 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.002
Identities = 58/249 (23%), Positives = 100/249 (40%), Gaps = 54/249 (21%)
Query: 1092 NSTDYQDSISFSKLDIITPSQKL--------LARQLTFEIVPGKSLLVTGPNGSGKSSVF 1143
++ I + ++ +Q L + + +I + + GP+G GKS+
Sbjct: 8 VQVKNEEKIETAPKKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYI 67
Query: 1144 RVLR---GLWPVV--SGSLTKPSQHI------DEEAGSGCGIFYVPQRPYTCLGTLRDQI 1192
+ L L P V +G + Q+I EE + G+ + Q+P ++ D +
Sbjct: 68 KTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVF--QKPNPFPKSIYDNV 125
Query: 1193 IYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNW 1252
Y K+HG +K LD ++ L G + WD +
Sbjct: 126 TY----------GPKIHGIKDK-----KTLDEIVEKSLRGAAI----------WDELKDR 160
Query: 1253 EDI----LSLGEQQRLGMARLFFHKPKFGILDECTNA----TSVDVEEQLYRLAKDMGIT 1304
LS G+QQRL +AR +P ++DE T+A +++ VEE + L KD I
Sbjct: 161 LHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSII 220
Query: 1305 FVTSSQRPA 1313
VT + + A
Sbjct: 221 IVTHNMQQA 229
|
Length = 271 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 42/156 (26%), Positives = 66/156 (42%), Gaps = 27/156 (17%)
Query: 465 TLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYT 524
L VE G + I GP+G+GKS+L ++ G SG + G + +RP
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQ----DHTTTPPSRRP-- 72
Query: 525 AVGTL--RDQLIYPLTSDQEVEPLTHGG----------MVELLKNVDLEYLLDRYPPEKE 572
V L + L LT Q + + G + + + + +E LL R P
Sbjct: 73 -VSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP---- 127
Query: 573 INWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
+LS G++QR+ +AR + +LDE SA
Sbjct: 128 ----GQLSGGQRQRVALARCLVREQPILLLDEPFSA 159
|
Length = 232 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.002
Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 34/171 (19%)
Query: 458 NVLVENLTLKVEPGSNLLITGPNGSGKSS----LFRVL---GGLW----PLVSGHIAKPG 506
NV+V+N++ + PG L + G +GSGKS+ L R++ G +W PL H
Sbjct: 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPL---HNLNRR 355
Query: 507 VGSDLNKEIFYVPQRPYTAVGTLRD--QLI-------YPLTSDQEVEPLTHGGMVELLKN 557
+ I V Q P +++ + Q+I P S + E M E+ +
Sbjct: 356 QLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLD 415
Query: 558 VDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
+ + RYP E S G++QR+ +AR KP ILDE TS+
Sbjct: 416 PETRH---RYPAE--------FSGGQRQRIAIARALILKPSLIILDEPTSS 455
|
Length = 529 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 19/157 (12%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520
++++ L+V+ G L+I G NGSGKS++ + + L G + G+ + + ++ +
Sbjct: 26 LDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRN 85
Query: 521 RPYTAVGTLRDQLIYPLTSDQ--------EVEPLTHGGMV-ELLKNVDL-EYLLDRYPPE 570
+ +Q++ + + + P V E LK V + EY R+ P
Sbjct: 86 KAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEY--RRHAPH 143
Query: 571 KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
LS G++QR+ +A + +P+ I DE T+
Sbjct: 144 L-------LSGGQKQRVAIAGILAMRPECIIFDEPTA 173
|
Length = 280 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.002
Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 35/176 (19%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
++ V+ +++ + L V G +++ GP+G GKS+L R++ GL + SG I
Sbjct: 4 LKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWI 63
Query: 505 PG-VGSDL---NKEIFYVPQR----PYTAVGTLRDQLIYPL--------TSDQEVEPLTH 548
G V ++L +++I V Q P+ +V R+ + Y L ++ V
Sbjct: 64 GGRVVNELEPADRDIAMVFQNYALYPHMSV---RENMAYGLKIRGMPKAEIEERVA---- 116
Query: 549 GGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
E + ++LE LLDR P ELS G++QR+ M R +P + DE
Sbjct: 117 ----EAARILELEPLLDRKP--------RELSGGQRQRVAMGRAIVREPAVFLFDE 160
|
Length = 356 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 47/207 (22%)
Query: 447 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---- 502
+SGV+V+ + + + G + G NG+GKS+L +++ G+ P SG +
Sbjct: 21 YSGVEVL--------KGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGG 72
Query: 503 -----AKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-------VEPLTHGG 550
P L I+ VPQ P L++P S +E +
Sbjct: 73 NPCARLTPAKAHQLG--IYLVPQEP----------LLFPNLSVKENILFGLPKRQASMQK 120
Query: 551 MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 610
M +LL + + LD + G L + ++Q + + R + ILDE T+++T
Sbjct: 121 MKQLLAALGCQLDLD-------SSAG-SLEVADRQIVEILRGLMRDSRILILDEPTASLT 172
Query: 611 TDMEERFCAKVRAM---GTSCITISHR 634
ER +++R + G + ISH+
Sbjct: 173 PAETERLFSRIRELLAQGVGIVFISHK 199
|
Length = 510 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.003
Identities = 44/212 (20%), Positives = 81/212 (38%), Gaps = 43/212 (20%)
Query: 1112 QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSG 1171
++ + R L EI PG + V G +G+GK+++ R++ G +P E
Sbjct: 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEV---- 450
Query: 1172 CGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKL----HGKGEKLVDTTNILDSYLK 1227
P + L P E L L+ ++++ + D+ L
Sbjct: 451 ---------PKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLY 501
Query: 1228 TILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDE----CT 1283
R + E LS G+++R +A+L +P ++DE
Sbjct: 502 ------RRKF---SE-------------LSTGQKERAKLAKLLAERPNVLLIDEFAAHLD 539
Query: 1284 NATSVDVEEQLYRLAKDMGITFVTSSQRPALI 1315
T+V V ++ LA++ GIT + + RP +
Sbjct: 540 ELTAVRVARKISELAREAGITLIVVTHRPEVG 571
|
Length = 593 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.003
Identities = 56/225 (24%), Positives = 93/225 (41%), Gaps = 35/225 (15%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGL--WPVVSGSLTKPSQHIDEEAGSGCGI 1174
+ ++F I G+ L + G +G+GKS + VLRG+ + SG + ++ CG
Sbjct: 17 KNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEK-----CGY 71
Query: 1175 FYVPQRPYT----CLGTLRDQIIYPLSREEAELRALK------------LHGKGEKLVDT 1218
P + C GTL + + + + R ++ L+G L
Sbjct: 72 VERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLD-- 129
Query: 1219 TNILDSYLKTILEGV----RLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKP 1274
N+L++ + EG R L+E ++ D LS GE+QR+ +AR +P
Sbjct: 130 -NVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARD-LSGGEKQRVVLARQLAKEP 187
Query: 1275 KFGILDECTNA----TSVDVEEQLYRLAKDMGITFVTSSQRPALI 1315
+ DE T T+ V L K GI+ V +S P +I
Sbjct: 188 FLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVI 232
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 0.003
Identities = 53/210 (25%), Positives = 85/210 (40%), Gaps = 66/210 (31%)
Query: 442 ANYIEFSGVKV--VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS 499
A YI ++ +V V P ++++++L PG+ + + G NG+GKS+L R++ G+
Sbjct: 3 AQYI-YTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFE 61
Query: 500 GH-IAKPG--VGSDLNKEIFYVPQRPY------------TAVGTLRDQL-----IYPLTS 539
G PG VG Y+PQ P V ++ L IY +
Sbjct: 62 GEARPAPGIKVG--------YLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYA 113
Query: 540 DQEVEPLTHGGMVELLK---------------NVD--LEYLLD--RYPPEKEINWGDE-- 578
+ + + L ++D LE +D R PP D
Sbjct: 114 EPDAD------FDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP------WDAKV 161
Query: 579 --LSLGEQQRLGMARLFYHKPKFAILDECT 606
LS GE++R+ + RL KP +LDE T
Sbjct: 162 TKLSGGERRRVALCRLLLEKPDMLLLDEPT 191
|
Length = 556 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 44/169 (26%)
Query: 457 GNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI------------A 503
G+V++ +++ L + G ++ GP+G GKS+L R++ GL + SG + A
Sbjct: 14 GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA 73
Query: 504 KPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT--------SDQEVEPLTHGGMVELL 555
+ GVG Y P+ +V + + + L +Q V + E+L
Sbjct: 74 ERGVGMVFQSYALY----PHLSVA---ENMSFGLKLAGAKKEEINQRVNQVA-----EVL 121
Query: 556 KNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
+ L +LLDR P LS G++QR+ + R +P +LDE
Sbjct: 122 Q---LAHLLDRKP--------KALSGGQRQRVAIGRTLVAEPSVFLLDE 159
|
Length = 369 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.003
Identities = 56/194 (28%), Positives = 84/194 (43%), Gaps = 24/194 (12%)
Query: 468 VEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQR 521
++PG + I G GSGKSSL + + G I G+ L + + Q
Sbjct: 44 IKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQD 103
Query: 522 PYTAVGTLRDQLI--YPLTSDQEVEPLTHGGMVELLKNV--DLEYLLDRYPPEKEINWGD 577
P G++R L T D+ E L + LKN+ L LD E G+
Sbjct: 104 PILFSGSIRFNLDPECKCTDDRLWEALE----IAQLKNMVKSLPGGLDAVVTEG----GE 155
Query: 578 ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM-EERFCAKVRAMG---TSCITISH 633
S+G++Q +AR F K I+DE T+++ DM E KV + +TI+H
Sbjct: 156 NFSVGQRQLFCLARAFVRKSSILIMDEATASI--DMATENILQKVVMTAFADRTVVTIAH 213
Query: 634 RPALVAFHDVVLSL 647
R + + D+VL L
Sbjct: 214 RVSTILDADLVLVL 227
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.003
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502
L +NL L +E G L I G NG GK++L R L G SG +
Sbjct: 331 NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376
|
Length = 530 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 41/190 (21%), Positives = 77/190 (40%), Gaps = 34/190 (17%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG-------HIAKPGVGSDL-- 511
++ + L ++ G + + G +G GKS+L ++ GL SG I +PG +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 512 -NKEIF---YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRY 567
N + V + AV + L + + + + E + V L D+
Sbjct: 61 QNYSLLPWLTVRENIALAVDRVLPDL--SKSERRAI-------VEEHIALVGLTEAADKR 111
Query: 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE---CTSAVT-TDMEERFCAKVRA 623
P +LS G +QR+ +AR +PK +LDE A+T +++E
Sbjct: 112 P--------GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEE 163
Query: 624 MGTSCITISH 633
+ + ++H
Sbjct: 164 HRVTVLMVTH 173
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.003
Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 25/163 (15%)
Query: 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFY 517
++++++ L + PGS + + G NG+GKS+L ++L G VSG I L K I
Sbjct: 325 RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIG-------LAKGI-- 375
Query: 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR-----YPPEKE 572
+ Y A + QL + L +D+ PL H + L + L D + +K
Sbjct: 376 --KLGYFA----QHQLEF-LRADE--SPLQH--LARLAPQELEQKLRDYLGGFGFQGDKV 424
Query: 573 INWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 615
S GE+ RL +A + + +P +LDE T+ + DM +
Sbjct: 425 TEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQ 467
|
Length = 638 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.003
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 1256 LSLGEQQRLGMARLFFHKPKFGILDECTNA----TSVDVEEQLYRLAKDMGITFVTSSQR 1311
LS G+QQRL +AR KP ++DE T+A +++ +E+ + L K+ I VT + +
Sbjct: 148 LSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQ 207
Query: 1312 PA 1313
A
Sbjct: 208 QA 209
|
Length = 251 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 44/182 (24%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV-----SGHIAKPGV---GSDLN-- 512
+ L +E + GP+G GKS+ R L + L+ G + G SD++
Sbjct: 21 KINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVN 80
Query: 513 ---KEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKN-VDLEYLLDRYP 568
K + V Q+P ++ D + Y P THG +K+ L+ ++++
Sbjct: 81 QLRKRVGMVFQQPNPFPMSIYDNVAY--------GPRTHG-----IKDKKKLDEIVEKSL 127
Query: 569 PEKEINWGDE-----------LSLGEQQRLGMARLFYHKPKFAILDECTSAV----TTDM 613
+ W DE LS G+QQRL +AR +P+ ++DE TSA+ T +
Sbjct: 128 KGAAL-W-DEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKI 185
Query: 614 EE 615
EE
Sbjct: 186 EE 187
|
Length = 250 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 1256 LSLGEQQRLGMARLFFHKPKFGILDECT-NATSV---DVEEQLYRLAKDMGITFVTSSQR 1311
LS G++QRL +AR KPK ++DE T N V +EE L+ L K+ I VT S
Sbjct: 150 LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHS-- 207
Query: 1312 PA 1313
PA
Sbjct: 208 PA 209
|
Length = 253 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 56/203 (27%), Positives = 79/203 (38%), Gaps = 51/203 (25%)
Query: 1133 GPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIF--------------YVP 1178
GP+G GKS+ R + V K ID G ++ V
Sbjct: 38 GPSGCGKSTFLRCFNRMNDFVPNCKVKGELDID-----GIDVYSVDTNVVLLRAKVGMVF 92
Query: 1179 QRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYL 1238
Q+P ++ D + Y KLHG L LD ++ L V L
Sbjct: 93 QKPNPFPKSIYDNVAY----------GPKLHG----LAKNKKKLDEIVEKSLTSVGL--- 135
Query: 1239 LEREEVG---WDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDE-CTN----ATSVDV 1290
EE+G D+ LS G+QQRL +AR KP ++DE C+ AT+V +
Sbjct: 136 --WEELGDRLKDSAFE----LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNV-I 188
Query: 1291 EEQLYRLAKDMGITFVTSSQRPA 1313
E + L K+ I VT S + A
Sbjct: 189 ENLIQELKKNFTIIVVTHSMKQA 211
|
Length = 251 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.004
Identities = 61/252 (24%), Positives = 104/252 (41%), Gaps = 50/252 (19%)
Query: 1058 ELSGGINRI-----FELEELLDAAQPGDDEISGSSQHKWNSTDYQ--DSISFSKLDIITP 1110
EL G +NR+ ++ LL+ + S+ + Y +I+F +P
Sbjct: 438 ELEGDLNRLDDVLRNPVDPLLEEEEAPAA----GSEPSPRLSGYVELRNITFG----YSP 489
Query: 1111 SQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEE 1167
+ L + + PG+ + + G +GSGKS++ +++ GL+ SG + P + I E
Sbjct: 490 LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPRE 549
Query: 1168 AGSGCGIFYVPQRPYTCLGTLRDQIIY--PLSREEAELRALK---LHGKGEKLVDTTNIL 1222
+ + V Q + GT+RD + P + +RA K +H T+
Sbjct: 550 VLANS-VAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHD------VITSRP 602
Query: 1223 DSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDEC 1282
Y + EG AN LS G++QRL +AR P ILDE
Sbjct: 603 GGYDAELAEG--------------GAN------LSGGQRQRLEIARALVRNPSILILDEA 642
Query: 1283 TNATSVDVEEQL 1294
T+A + E+ +
Sbjct: 643 TSALDPETEKII 654
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.004
Identities = 46/186 (24%), Positives = 70/186 (37%), Gaps = 33/186 (17%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS---LTKPSQHIDEEAGSGCG-I 1174
++FEI G+ + G NG+GKS+ ++L GL SG K EE G +
Sbjct: 43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLV 102
Query: 1175 FYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVR 1234
+ + L L + + E+ + + + L + ILD LEG
Sbjct: 103 MGQKLQLWWDLPALDS---LEVLKLIYEIPDDEFAERLDFLTE---ILD------LEGF- 149
Query: 1235 LSYLLEREEVGWDANLNWE-DILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQ 1293
L W LSLG++ R +A H PK LDE T V+ +
Sbjct: 150 ---------------LKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQAN 194
Query: 1294 LYRLAK 1299
+ K
Sbjct: 195 IREFLK 200
|
Length = 325 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.004
Identities = 53/268 (19%), Positives = 96/268 (35%), Gaps = 41/268 (15%)
Query: 245 YASPKY----VFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQL---HSRLRTHA 297
Y SPK V WI+ + G +M E +L+ +Y+ + L +
Sbjct: 144 YLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNR 203
Query: 298 ESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEP 357
E + + + + + +L +W LL +G + L +
Sbjct: 204 ERAEYVHNNLYIPDAQEYRHHIIRANTFHLLAVNW----SNIMLLGLIG--LVFWLALSL 257
Query: 358 FFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLS---ISSRRLNRLSGYADRIH 414
+A ST A ++ L + + ++S L TL ++ ++ +L A
Sbjct: 258 GWA-------STNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLE-LAPYKA 309
Query: 415 ELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNL 474
+ PQ F + +E V+ V + L ++ G +
Sbjct: 310 DF-----------PRPQ------AFPDWKTLELRNVRFAYQDNAFHVGPINLTIKRGELV 352
Query: 475 LITGPNGSGKSSLFRVLGGLWPLVSGHI 502
+ G NGSGKS+L +L GL+ SG I
Sbjct: 353 FLIGGNGSGKSTLAMLLTGLYQPQSGEI 380
|
Length = 546 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.004
Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 22/156 (14%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI------AKPGVGSDLNKEIF 516
+++ + G I G NGSGKS++ +++ G+ + SG I L K I
Sbjct: 27 DVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86
Query: 517 YVPQRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMV----ELLKNVDLEYLLDRYPPEK 571
V Q P VG++ + Y + E + + M E LK VD +L+R E
Sbjct: 87 IVFQNPDNQFVGSI---VKYDVAFGLENHAVPYDEMHRRVSEALKQVD---MLERADYEP 140
Query: 572 EINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
LS G++QR+ +A + P ILDE TS
Sbjct: 141 N-----ALSGGQKQRVAIAGVLALNPSVIILDEATS 171
|
Length = 269 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.004
Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 23/184 (12%)
Query: 445 IEFSGVKVVTPTGNVL-VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
IEF V P V + N+ K+ G + + G +GSGKS++ +L + + G I
Sbjct: 342 IEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEIL 401
Query: 504 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLT---SDQEVEP---LTHG-G 550
G + L ++ V Q + T+ + + Y T S +++E + +
Sbjct: 402 LDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMD 461
Query: 551 MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 610
+ + N LD E G LS G++QR+ +AR ILDE TSA+
Sbjct: 462 FINKMDNG-----LDTVIGEN----GVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512
Query: 611 TDME 614
T+ E
Sbjct: 513 TESE 516
|
Length = 582 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1338 | |||
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| PF06472 | 281 | ABC_membrane_2: ABC transporter transmembrane regi | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-136 Score=1275.07 Aligned_cols=1125 Identities=18% Similarity=0.211 Sum_probs=749.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcChhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 105 RDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISEN----ILLCFLLSTMHSTSKYITGTLSLQFRKIVT 180 (1338)
Q Consensus 105 ~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~l~~~~R~~lt 180 (1338)
.++.+.++.+++.-...-.+..+.+.+.+.+...........+..+ +.+.++..+...+........+.| .+
T Consensus 28 ~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~~lg~~~~~~~~~q~~c~~~~geR----q~ 103 (1228)
T KOG0055|consen 28 LLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFVYLGVGVFISGFIQVSCWMRTGER----QT 103 (1228)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Confidence 4344455555555555556667777888877765522211222222 222222222233444444555555 89
Q ss_pred HHHHHHHhcccccccccccCCC-CCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhchhhHHHHHHHHHH
Q 000711 181 KLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVL 259 (1338)
Q Consensus 181 ~~l~~~~~~~~~~~~~~~~d~~-~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~l~~~~ 259 (1338)
.++|++|++..+.++++|||.+ .++..+|+++|++++.+.+.+.+..++..+.+ |+-.+.+.++..|.++++++.+.|
T Consensus 104 ~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~-fi~g~ii~F~~~W~Ltlv~l~~~P 182 (1228)
T KOG0055|consen 104 ARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLAT-FIAGFVIGFYYGWKLTLVMLSFIP 182 (1228)
T ss_pred HHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999975 57999999999999999999988866554433 333445566678889999998888
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 000711 260 GAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRV-VLHDHWWFGMIQ 338 (1338)
Q Consensus 260 ~~~~~~~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 338 (1338)
+..+....+.+.+.+...++++..++.-...++...++++|.+|+||+.|. ++|.+..+..++ .++...+.++..
T Consensus 183 li~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~----~ry~~~L~~~~k~gi~~g~~~G~~~ 258 (1228)
T KOG0055|consen 183 LIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEI----ERYSKALENALKFGIKKGLFKGLGL 258 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888777778888889999999998988888899999999999999999998 566665554443 355555555543
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcccccCC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 339 DFLLKYLGATVAVILIIEPFFAGNLKPD-TSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELM 417 (1338)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~ri~~~~ 417 (1338)
.+...++....+.. .|+++.+... ..+.|.. +. .+.+++.. -.++++..+.+..+..+.+++.+|++++
T Consensus 259 G~~~~~~~~~~a~~----~WyG~~li~~~~~~~g~v--~~---v~~~vl~g-~~sLgqa~p~l~~f~~a~~aa~~I~~~i 328 (1228)
T KOG0055|consen 259 GFTFFLLFASYALA----FWYGSTLILNGGYNGGDV--IT---VFFSVLIG-GMSLGQASPHLSAFAKARAAAYRIFETI 328 (1228)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHhcCCCCCceE--EE---EEeehhhh-hhhhhccccchHHHhccccchHHHHHHh
Confidence 33221122222222 2444343222 1222221 10 01112222 2377888888899999999999999999
Q ss_pred HhhhhccccCCCCCCCCCCCCcCCCCcEEEEeEEEEcCCC--CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCC
Q 000711 418 VISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW 495 (1338)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~ 495 (1338)
+..+.++..+. .........+.|+|+||+|+||.. .++|+|+||+|++|+.++|||||||||||++++|.|+|
T Consensus 329 ~~~~~i~~~~~-----~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfy 403 (1228)
T KOG0055|consen 329 DRKPSIDPYSK-----GGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFY 403 (1228)
T ss_pred cCCCCCCcccc-----cCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 88776543210 011111236789999999999975 48999999999999999999999999999999999999
Q ss_pred CCCccEEEeCCCC------ccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCC
Q 000711 496 PLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPP 569 (1338)
Q Consensus 496 ~~~~G~i~~~~~~------~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 569 (1338)
+|++|+|.+||.+ +++|++||.|.|+|.+|++||+|||.||.++ .+.+++.++++.++.++++..+|.
T Consensus 404 dP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~d------at~~~i~~a~k~ana~~fi~~lp~ 477 (1228)
T KOG0055|consen 404 DPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPD------ATREEIEEAAKAANAHDFILKLPD 477 (1228)
T ss_pred CCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCc------ccHHHHHHHHHHccHHHHHHhhHH
Confidence 9999999999987 4578899999999999999999999999754 688999999999999999999998
Q ss_pred Cccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhHhhcceE
Q 000711 570 EKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVV 644 (1338)
Q Consensus 570 ~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~~~~d~i 644 (1338)
+.++ +.|.+|||||||||||||||+++|+||||||||||||+++|+.++++|.+ .|+|.|+|+||+++++++|+|
T Consensus 478 g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I 557 (1228)
T KOG0055|consen 478 GYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKI 557 (1228)
T ss_pred hhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEE
Confidence 7665 46789999999999999999999999999999999999999999999976 599999999999999999999
Q ss_pred EEccCCCceEEeecCCCcccccccchh-hcccccccc----chhhHHHHHHHHHhhcccccC-CcccchhhhHHHhhCCC
Q 000711 645 LSLDGEGEWRVHDKRDGSSVVTKSGIN-MIKSSETDR----QSDAMAVEQAFVTAKKDSAFS-NPKAQSYVSEVIAASPI 718 (1338)
Q Consensus 645 ~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 718 (1338)
++++++ ..++...+.+.......+. .....+.+. ..+..........+...+... ............. ...
T Consensus 558 ~v~~~G--~IvE~G~h~ELi~~~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~-~~~ 634 (1228)
T KOG0055|consen 558 AVMEEG--KIVEQGTHDELIALGGIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLLS-VKP 634 (1228)
T ss_pred EEEECC--EEEEecCHHHHHhccchHHHHHHHHhhhhhhhccccccchhhhhhhccccccccccccCCcccccccc-ccc
Confidence 999973 3444443322211111111 000000000 000000000000000000000 0000000000000 000
Q ss_pred CCCCCCCCCccccccCcccchhhHHhHHHHhhccccchhhHHHH----HHHHHHHHHHHHHHHHHhhcchHHHHHHhcCH
Q 000711 719 ADHNVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLL----AVAFLVVSRTWISDRIASLNGTTVKYVLEQDK 794 (1338)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~ 794 (1338)
++... ..+..........+++.. ...|.|.....|.+. +...++++..+ +..+..+........ +..
T Consensus 635 -~~e~~--~~~~~~~~~~~s~~~i~k---~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~-s~~~~~f~~~~~~~~--~~~ 705 (1228)
T KOG0055|consen 635 -EGEDP--EEPVSEEDEKVSFWRIFK---LNKPEWPYLLLGSLGAAIRGATYPLFAYVF-SQVLEAFYPPDDDEL--KRE 705 (1228)
T ss_pred -ccccc--ccccccccccccHHHHHH---hccchhHHHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHhCCChHHH--HHH
Confidence 00000 000000001112233332 222332222222222 12222222211 111111110000000 001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-ccchhhcccCCCCCCccchhHHHHHHHHH
Q 000711 795 ASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRK-NSFYKVFNMSSKSIDADQRITHDLEKLTT 873 (1338)
Q Consensus 795 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~~-~~ff~~~~~~~~~~~~~~Rls~D~~~l~~ 873 (1338)
..+ +..++++.++...+..++..++...++..|..+++.+++++.|++ ..|||..+++ +.+.+|+++|...+..
T Consensus 706 ~~~--~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns---g~l~~RLa~Da~~vr~ 780 (1228)
T KOG0055|consen 706 VRA--WALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS---GALSSRLATDASNVRA 780 (1228)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc---hHHHHHHhcchHHHHH
Confidence 112 223344445555556666667777778888888888888888886 5999987765 6688999999987655
Q ss_pred HHHH----HHHH---hhHhHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhcCccccccHHHHH-hccchHHHHH
Q 000711 874 DLSG----LVTG---MVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQ-LEGTFRFMHE 945 (1338)
Q Consensus 874 ~l~~----~~~~---~i~~~~~i~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-le~~~r~~~~ 945 (1338)
.+.. ++.. ++.+++..++++|+|++++.. ..+++++......+.. .....+.++ .+...+.+ .
T Consensus 781 ~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la----~~Pll~~~~~~~~~~~----~~~~~~~~~~~~ea~~iA-~ 851 (1228)
T KOG0055|consen 781 AVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLA----TFPLLILSGYLQKKFL----KGFSKDDKKAYEEASKIA-I 851 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHH-H
Confidence 4333 3322 333445557899999987522 1111111111111211 111222222 23333333 3
Q ss_pred HHHhhHHHhhhcCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhHHHHhhhhhHHHHHHHHHHHHhhcccchhhhc
Q 000711 946 RLRAHAESVAFFGGGAREKAMIESRFRELL-EHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVST 1024 (1338)
Q Consensus 946 ~~~~~~e~i~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1024 (1338)
+..+++++|++|+.+ .+. .+.|.+.+ ...+...++.++.++... ..+......++++++|+..+...... +
T Consensus 852 eai~NIrTV~al~~e---~~~-~~~y~~~l~~p~~~~~~~~~i~gl~f~--~sqs~~~~~~A~~f~~G~~Li~~g~~--~ 923 (1228)
T KOG0055|consen 852 EAVSNIRTVAALCAE---EKF-MELYKEELEKPRKSSFKRGLISGLGFG--FSQSLLFFVYALSFWYGARLISNGEM--T 923 (1228)
T ss_pred HHHHhHHHHHHHhhH---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHhcCCc--C
Confidence 445688999998743 333 33444444 455566677777666533 33444456677888887654332211 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHhhcCCCCCCccCCccCCCCCCCCCCceEEee
Q 000711 1025 QGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSK 1104 (1338)
Q Consensus 1025 ~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ri~~~~~~~~~~~~~~~~~~~~~~~~wp~~~~~g~I~f~n 1104 (1338)
+..+... | .++......+++.....+.+.....|+.+|+++++.++..+... +....+| ..+|+|+|+|
T Consensus 924 ~~~~~~v--f--~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~-----~~~~~~~--~~~G~I~~~~ 992 (1228)
T KOG0055|consen 924 FEDVFRV--F--MALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDS-----TSGGKLP--NVKGDIEFRN 992 (1228)
T ss_pred HHHHHHH--H--HHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCC-----CCCCccc--cceeEEEEee
Confidence 2222111 1 11222334455566677778888899999999998765332211 1111122 2589999999
Q ss_pred eEEeCCCc--cccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEEEEcCC
Q 000711 1105 LDIITPSQ--KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQR 1180 (1338)
Q Consensus 1105 V~f~yp~~--~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~~VpQd 1180 (1338)
|+|.||++ .+||+|+||+|++||+|||||||||||||++.+|+|||||++|+|.|||.||+++ +++|++|++|+||
T Consensus 993 V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQE 1072 (1228)
T KOG0055|consen 993 VSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQE 1072 (1228)
T ss_pred eEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccC
Confidence 99999985 4799999999999999999999999999999999999999999999999999998 6899999999999
Q ss_pred CCCCCCCHHHHhcCCC-c-hHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC-cccCCCC
Q 000711 1181 PYTCLGTLRDQIIYPL-S-REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILS 1257 (1338)
Q Consensus 1181 P~LF~GTIReNL~~p~-~-~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LS 1257 (1338)
|.||++||||||.|+. . +++|+++|||.|++|+| +..+|+||||.+ ++|.+||
T Consensus 1073 P~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~F------------------------I~sLP~GyDT~vGerG~QLS 1128 (1228)
T KOG0055|consen 1073 PVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNF------------------------ISSLPQGYDTRVGERGVQLS 1128 (1228)
T ss_pred chhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHH------------------------HhcCcCcccCccCcccCcCC
Confidence 9999999999999983 2 56777888888876554 445678999998 5899999
Q ss_pred hhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1258 LGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1258 gGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
||||||||||||++||||||+|||||||||.++|+.+|+++.. .|+|+|+|||||+||+-+|.+.++.+|.
T Consensus 1129 GGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~ 1201 (1228)
T KOG0055|consen 1129 GGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGK 1201 (1228)
T ss_pred chHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCE
Confidence 9999999999999999999999999999999999999998854 5999999999999999999999997763
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-127 Score=1220.10 Aligned_cols=1110 Identities=18% Similarity=0.208 Sum_probs=714.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcChhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLI--SENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIH 184 (1338)
Q Consensus 107 l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~R~~lt~~l~ 184 (1338)
+++..++..+...+....|.+.+.+++.+.+...+....++ +..++..++.+++..-..|...++++++|..++..+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~IY 282 (1381)
T KOG0054|consen 203 FLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAIY 282 (1381)
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHH
Confidence 33334444444445677888888888888776333221111 1111111122233344677889999999999888777
Q ss_pred HHHhccccccccccc-CCCCCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHH
Q 000711 185 TRYFENMAYYKISHV-DGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGT 263 (1338)
Q Consensus 185 ~~~~~~~~~~~~~~~-d~~~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~l~~~~~~~~ 263 (1338)
++-+ .+.-... +...|...+-++.|++++.+....+ ..+-.+.+-+++..+.|+...++.-..- ++..++..-
T Consensus 283 ~K~L----~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~-h~~w~~Plqi~~~l~lLy~~LG~sa~~G-~~~~il~~p 356 (1381)
T KOG0054|consen 283 RKAL----RLSNSARGETTVGEIVNLMSVDAQRLSDAACFL-HLLWSAPLQIILALYLLYGLLGPSALAG-VAVMVLLIP 356 (1381)
T ss_pred Hhhh----cCchhhccCCCcchhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhChHHHHH-HHHHHHHHH
Confidence 6654 3332222 2346788889999999988765433 2222222322222223332222221111 111111111
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 264 MMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLK 343 (1338)
Q Consensus 264 ~~~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (1338)
+-.++++...+...++.+...+--...+++.++++.||+|+||+.+.+++++..++..+..++...... +..+...
T Consensus 357 ~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~----~~~~~~~ 432 (1381)
T KOG0054|consen 357 LNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSA----LNSFLNF 432 (1381)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 223345555555444444333333567888889999999999999998888776666665554322221 1111111
Q ss_pred HHHHHHHHHHHHHhHh--cccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000711 344 YLGATVAVILIIEPFF--AGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISR 421 (1338)
Q Consensus 344 ~~~~~~~~~~~~~~~~--~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~ri~~~~~~~~ 421 (1338)
.....+.+ +.+..+. .|.. .+... .+. ..+++..+-.++..+...+..+.++..+.+|+.+++..++
T Consensus 433 ~~p~lv~~-~tF~~~v~~~~~~----lt~~~--aF~----slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e 501 (1381)
T KOG0054|consen 433 FSPVLVSV-VTFVVFVLLLGNL----LTAST--AFT----SLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEE 501 (1381)
T ss_pred HHHHHHHH-HHHHHHhhccCcc----ccHhH--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 11111111 1111111 1111 11111 111 2233444445677777778888888999999999987644
Q ss_pred hccccCCCCCCCCCCCCcCCCCcEEEEeEEEEcCC--CCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCc
Q 000711 422 ELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS 499 (1338)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~--~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~ 499 (1338)
.... ... .. ........++++|.++...+ ..+.|+|+||+|++|+.++|+||.|||||||+.+|+|+.+..+
T Consensus 502 ~~~~-~~~--~~---~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~s 575 (1381)
T KOG0054|consen 502 LDPD-SVE--RS---PDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLS 575 (1381)
T ss_pred cCcc-ccc--cC---CCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCccccc
Confidence 3221 110 00 01112456999999997643 3569999999999999999999999999999999999999999
Q ss_pred cEEEeCCCCccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccc---cCC
Q 000711 500 GHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWG 576 (1338)
Q Consensus 500 G~i~~~~~~~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g 576 (1338)
|++.++| .++||||.||+++|||||||+||.+ .++++++++++.|.|+++++.+|.++.+ +.|
T Consensus 576 G~v~v~g-------siaYv~Q~pWI~ngTvreNILFG~~-------~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErG 641 (1381)
T KOG0054|consen 576 GSVAVNG-------SVAYVPQQPWIQNGTVRENILFGSP-------YDEERYDKVIKACALKKDLEILPFGDLTEIGERG 641 (1381)
T ss_pred ceEEEcC-------eEEEeccccHhhCCcHHHhhhcCcc-------ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCc
Confidence 9999987 6999999999999999999999975 4678999999999999999999987776 478
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHhhcceEEEccCCCce
Q 000711 577 DELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDGEGEW 653 (1338)
Q Consensus 577 ~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~~~d~i~~l~~~g~~ 653 (1338)
.+|||||||||+||||+|+++||++||+|.||+|.++.++|++.+-. .++|+|+|||+++.++.+|.|++|+++ .
T Consensus 642 inLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G-~- 719 (1381)
T KOG0054|consen 642 INLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDG-K- 719 (1381)
T ss_pred cCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCC-e-
Confidence 89999999999999999999999999999999999999999998754 389999999999999999999999973 2
Q ss_pred EEeecCCCccccc-ccchhhccccccccchhhHHHHHHHHHhhcccccCCcccchhhhHHHhhCC-C-CCCC-CCCCCcc
Q 000711 654 RVHDKRDGSSVVT-KSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASP-I-ADHN-VPLPVFP 729 (1338)
Q Consensus 654 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~-~~~~~~~ 729 (1338)
..+ .+..+.... ........ .+.+.+....... ...+... ..........+...... . .+.. .......
T Consensus 720 I~~-~Gty~el~~~~~~~~~l~-~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1381)
T KOG0054|consen 720 IVE-SGTYEELLKSGGDFAELA-HEEESEQEEEASE----KDLESGE-SSRESESRSLESLSSEEEKSKDEKEEEDKLVQ 792 (1381)
T ss_pred Eec-ccCHHHHHhcchhHHHHh-hccchhhcccccc----ccccccc-cccchhhhhhhhhcccccccccccchhhHHHH
Confidence 222 111111100 00000000 0000000000000 0000000 00000000000000000 0 0000 0000000
Q ss_pred ccccCcccchhhHHhHHHHhhccccch------hhHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhcCHHHHHHHHHH
Q 000711 730 QLKSAPRILPLRVADMFKVLVPTVFDK------QGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGV 803 (1338)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 803 (1338)
...++.+...+.+ ++.++...... ....+......+.+++|++.|.......... . ..-..++++
T Consensus 793 ~ee~~~G~v~~~v---Y~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~---~---~~~~~~~~v 863 (1381)
T KOG0054|consen 793 EEERETGKVSWSV---YKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTT---T---VSTSFYLGV 863 (1381)
T ss_pred HHHHhcCEeeHHH---HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc---C---CCcchHHHH
Confidence 0011112222222 22222210000 0011112233456788999887653211000 0 011224566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-ccchhhcccCCCCCCccchhHHHHHHHHHHHHHHHHHh
Q 000711 804 SVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRK-NSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGM 882 (1338)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~~-~~ff~~~~~~~~~~~~~~Rls~D~~~l~~~l~~~~~~~ 882 (1338)
|.+.+++..++.....+.....+.+..++||++++++++|. ++|||.++.++ +.|||++|++.+|..++..+..+
T Consensus 864 Y~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GR----ILNRFSkD~~~vD~~Lp~~~~~~ 939 (1381)
T KOG0054|consen 864 YALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGR----ILNRFSKDIDTVDVLLPFTLEFF 939 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccc----hhhhcccchHHHHHhhHHHHHHH
Confidence 66666776666666666677778888999999999999997 58999776544 79999999999999999888887
Q ss_pred hHhHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhcCccccccHHHHHhccchHH-HHHHHH---hhHHHhhhcC
Q 000711 883 VKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRF-MHERLR---AHAESVAFFG 958 (1338)
Q Consensus 883 i~~~~~i~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~-~~~~~~---~~~e~i~~~~ 958 (1338)
+..++.++.....++.+..+ +.++.+++.+..++++. .|...+++.+|+|+..|+ .+.++. .+..+|++|+
T Consensus 940 ~~~~~~~l~~~~vi~~~~P~--fli~~~pl~v~~~~~~~---~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~ 1014 (1381)
T KOG0054|consen 940 LQSLLNVLGILVVISYVTPW--FLIAIIPLGVIYYFVQR---YYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFG 1014 (1381)
T ss_pred HHHHHHHHHHHHHhhHHhHH--HHHHHHHHHHHHHHHHH---HHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeecc
Confidence 77665554333222222211 11111222222222222 244557788999998774 223333 2456789998
Q ss_pred ChHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhhhHHHHhhhhhHHHHHHHHHHHHhhcccchhhhchHHHHHHHHH
Q 000711 959 GGAREKAMIESRFRELLEHSL----LLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRF 1034 (1338)
Q Consensus 959 ~~~~e~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~ 1034 (1338)
.+++ +.+.+.+..|... .......|+++..+++...+. +..++. ++...... ..+|.++.++.|
T Consensus 1015 ~~~r----f~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v----~~~al~-~vl~~~~~---~~~g~vGLslsy 1082 (1381)
T KOG0054|consen 1015 KEER----FIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVV----LIAALF-AVLLPSGL---ISPGLVGLSLSY 1082 (1381)
T ss_pred ccHH----HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-HHHccCCC---CCcchHHHHHHH
Confidence 5543 4455555555332 223333334444444432221 112222 22111110 135667777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHhhcCCCCCCccCCccCCCCCCCCCCceEEeeeEEeC-CCcc
Q 000711 1035 LASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIIT-PSQK 1113 (1338)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ri~~~~~~~~~~~~~~~~~~~~~~~~wp~~~~~g~I~f~nV~f~y-p~~~ 1113 (1338)
.. ++...+++++......+....|+|||.||.+.+++ . +...+...||++||. +|+|+|+|++++| |+.|
T Consensus 1083 al----~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E-~-p~~~~~~~pp~~WP~---~G~I~f~~~~~RYrp~lp 1153 (1381)
T KOG0054|consen 1083 AL----QLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSE-A-PLEIEESRPPPSWPS---KGEIEFEDLSLRYRPNLP 1153 (1381)
T ss_pred HH----HHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCC-C-CCCCcCCCCCCCCCC---CCeEEEEEeEEEeCCCCc
Confidence 54 23334455555555555556899999999987765 1 122222337889998 7999999999965 7789
Q ss_pred ccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEEEEcCCCCCCCCCHHHH
Q 000711 1114 LLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQ 1191 (1338)
Q Consensus 1114 ~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~~VpQdP~LF~GTIReN 1191 (1338)
+|||||||+|+||||||||||||||||||+++|+|+.||.+|+|.|||+||+++ +.+|++|++|||||+||+||+|.|
T Consensus 1154 ~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~N 1233 (1381)
T KOG0054|consen 1154 LVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFN 1233 (1381)
T ss_pred chhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccc
Confidence 999999999999999999999999999999999999999999999999999998 788999999999999999999999
Q ss_pred hcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC-cccCCCChhHHHHHHHHHHh
Q 000711 1192 IIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLF 1270 (1338)
Q Consensus 1192 L~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAl 1270 (1338)
|| |+. +..|+++|++||.++|++.++++|+|||+.+ +.|.|||.||||++|+||||
T Consensus 1234 LD-Pf~----------------------e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARAL 1290 (1381)
T KOG0054|consen 1234 LD-PFD----------------------EYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARAL 1290 (1381)
T ss_pred cC-ccc----------------------ccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHH
Confidence 96 764 2468899999999999999999999999998 68999999999999999999
Q ss_pred hcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1271 FHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1271 Lr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
||++|||+||||||++|++|+..||+++++ ++||||+||||++||-.+|++++|++|+
T Consensus 1291 Lr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~ 1350 (1381)
T KOG0054|consen 1291 LRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGR 1350 (1381)
T ss_pred hccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCe
Confidence 999999999999999999999999999875 6999999999999999999999998774
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-116 Score=1179.72 Aligned_cols=1156 Identities=14% Similarity=0.133 Sum_probs=694.5
Q ss_pred HHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 88 LQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYI 167 (1338)
Q Consensus 88 l~~l~~~~~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 167 (1338)
+.+++++.-+..+ .++++.++++++.......+|.+.+.+++.+...+ ......+ .++++.++..+..|+
T Consensus 47 ~~~~~~~~~~~~~----~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~--~~~~~~~----~~~~~~i~~~~~~~~ 116 (1466)
T PTZ00265 47 FFLPFKCLPASHR----KLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGE--NVNDIIF----SLVLIGIFQFILSFI 116 (1466)
T ss_pred HHHHHhcCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--hHHHHHH----HHHHHHHHHHHHHHH
Confidence 4566666655433 33566666677777777888888888888764221 1111111 111222223344455
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCC-CchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc
Q 000711 168 TGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRIT-HPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYA 246 (1338)
Q Consensus 168 ~~~l~~~~R~~lt~~l~~~~~~~~~~~~~~~~d~~~~-n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~ 246 (1338)
...+....-++++.++|.+||+++++++++|+|...+ ...+|+++|++.+.+.+...+..++..++.. +.++.+++++
T Consensus 117 ~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~-i~~~i~~~~~ 195 (1466)
T PTZ00265 117 SSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAF-LGLYIWSLFK 195 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 5555555555599999999999999999999987643 6778888888888887777776666655443 3344556678
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Q 000711 247 SPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRV 326 (1338)
Q Consensus 247 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~ 326 (1338)
+|.+++++++.+|+..++..++++.+.+...+.++..+++.....+...++++|+.|++|+.+.+++.+......+.
T Consensus 196 sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~--- 272 (1466)
T PTZ00265 196 NARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKY--- 272 (1466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHH---
Confidence 99999998888887777777778888777777777777788888888889999999999999986555433332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccccCC---------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 327 VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPD---------TSTLGRAKMLSNLRYHTSVIISLFQSLGTLS 397 (1338)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~ 397 (1338)
..+.....++...+.........++++ |+++.+... ..+.|. +++.+ ...+ ..+..+..+.
T Consensus 273 ~~k~~~~~~~~~~~~~~~~~~~~~l~~----~~G~~lv~~g~~~~~~~~~~t~g~--v~~~~---~~~l-~~~~~l~~i~ 342 (1466)
T PTZ00265 273 ILKANFMESLHIGMINGFILASYAFGF----WYGTRIIISDLSNQQPNNDFHGGS--VISIL---LGVL-ISMFMLTIIL 342 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCcccccccccchhH--HHHHH---HHHH-HHHHHHHHHH
Confidence 223333333333222211111122222 233322211 123332 22211 1111 1223345566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCcCCCCcEEEEeEEEEcCCC--CeeeeeeeEEEeCCCEEE
Q 000711 398 ISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLL 475 (1338)
Q Consensus 398 ~~~~~l~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~--~~~l~~~sl~i~~G~~~~ 475 (1338)
..+..+++...+++|+.++++.+++.+.... ....+..+.|+|+||+|.||+. .++|+|+||+|++||+++
T Consensus 343 ~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~-------~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~va 415 (1466)
T PTZ00265 343 PNITEYMKSLEATNSLYEIINRKPLVENNDD-------GKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYA 415 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC-------CccCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEE
Confidence 6778889999999999999987654321100 0001112469999999999853 479999999999999999
Q ss_pred EEcCCCCcHHHHHHHHcCCCCCCccEEEeC-CCC------ccccccEEEEecCCCCCCCCHHHHhcCCCCCC--------
Q 000711 476 ITGPNGSGKSSLFRVLGGLWPLVSGHIAKP-GVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSD-------- 540 (1338)
Q Consensus 476 i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~-~~~------~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~-------- 540 (1338)
|+||||||||||+++|+|+|+|++|+|.++ |.+ .+++++|+||||+|.+|++|++|||.++....
T Consensus 416 IvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~ 495 (1466)
T PTZ00265 416 FVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSN 495 (1466)
T ss_pred EECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhcc
Confidence 999999999999999999999999999994 554 23577899999999999999999999974210
Q ss_pred -------------------------------------------cccCCCCHHHHHHHHHHcCCchHHhcCCCCccc---c
Q 000711 541 -------------------------------------------QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---N 574 (1338)
Q Consensus 541 -------------------------------------------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~ 574 (1338)
......+++++.++++.++++++++++|.+.++ +
T Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~ 575 (1466)
T PTZ00265 496 YYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGS 575 (1466)
T ss_pred ccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCC
Confidence 000135678999999999999999999987654 3
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHhhcceEEEccCC
Q 000711 575 WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 575 ~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~~~d~i~~l~~~ 650 (1338)
.|.+|||||||||+|||||+++|++||||||||+||+++++.+++.+++ .|+|+|+||||+++++.||+|++|+++
T Consensus 576 ~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 576 NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNR 655 (1466)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence 5789999999999999999999999999999999999999999998865 379999999999999999999999863
Q ss_pred -Cc--------------------------------------------eEEeecCCCcccc-cccchhhccccccccchhh
Q 000711 651 -GE--------------------------------------------WRVHDKRDGSSVV-TKSGINMIKSSETDRQSDA 684 (1338)
Q Consensus 651 -g~--------------------------------------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 684 (1338)
.| +.++.+.+.+... ....+..............
T Consensus 656 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~ 735 (1466)
T PTZ00265 656 ERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKS 735 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhccccccc
Confidence 11 1111111000000 0000000000000000000
Q ss_pred HHHHHHHHHhhcccccCCcccchhhhHHHh----hCCCCCCCCCCCC-----c---c--cc---cc---CcccchhhHHh
Q 000711 685 MAVEQAFVTAKKDSAFSNPKAQSYVSEVIA----ASPIADHNVPLPV-----F---P--QL---KS---APRILPLRVAD 744 (1338)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-----~---~--~~---~~---~~~~~~~~~~~ 744 (1338)
.............................. ............. . . .. .. .....+.....
T Consensus 736 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1466)
T PTZ00265 736 SNNDNDKDSDMKSSAYKDSERGYDPDEMNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRI 815 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccchhccccchhhhhccccccccchhHHH
Confidence 000000000000000000000000000000 0000000000000 0 0 00 00 00001111111
Q ss_pred HHHHhhccccchhhHHHH----HHHHHHHHHHHHHHHHHhhcchHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 745 MFKVLVPTVFDKQGAQLL----AVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRH 820 (1338)
Q Consensus 745 ~~~~~~~~~~~~~~~~l~----~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 820 (1338)
+++.+++.......+.+. +.+.++++. .++.++...... ... .....+ +..++++.+++..+..++..+
T Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~--~~~--~~~~~~--~~l~~~~~~i~~~~~~~l~~~ 888 (1466)
T PTZ00265 816 VYREIFSYKKDVTIIALSILVAGGLYPVFAL-LYAKYVSTLFDF--ANL--EANSNK--YSLYILVIAIAMFISETLKNY 888 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcc--hHH--HHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 111111110000011111 111111111 111111111000 000 000111 111222222333333444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccc-ccchhhcccCCCCCCccchhHHHHHHHHHHHHHHHHHhhH-------hHHHHHHH
Q 000711 821 LTARLALGWRIRMTQHLLKSYLRK-NSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVK-------PSVDILWF 892 (1338)
Q Consensus 821 ~~~~~~~~~r~~l~~~l~~~~l~~-~~ff~~~~~~~~~~~~~~Rls~D~~~l~~~l~~~~~~~i~-------~~~~i~~~ 892 (1338)
+..+.+.++..++..++++++++. ..||+..+ ..++++.+|+++|++.+...+...+..++. .++.++++
T Consensus 889 ~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~--~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~ 966 (1466)
T PTZ00265 889 YNNVIGEKVEKTMKRRLFENILYQEISFFDQDK--HAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYF 966 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666667777777765 47887422 234668899999999888765543333222 22334566
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHhc----Ccccccc----------HHHHHhccchHHHHHHHHhhHHHhhhcC
Q 000711 893 TWRMKALTGQRGVAILYAYMLLGLGFLRSVT----PEFGDLT----------SREQQLEGTFRFMHERLRAHAESVAFFG 958 (1338)
Q Consensus 893 ~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~----------~~~~~le~~~r~~~~~~~~~~e~i~~~~ 958 (1338)
+|.++++.. .+++++...+..... ....... ...++..+.......+...+.++|++|+
T Consensus 967 ~~~l~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~ 1039 (1466)
T PTZ00265 967 CPIVAAVLT-------GTYFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYG 1039 (1466)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhc
Confidence 777654421 111111111111000 0000000 0001111122223344455778999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhhhHHHHHHHHHHHHhhcccchhhhchHHHHHHHHHHHHH
Q 000711 959 GGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASV 1038 (1338)
Q Consensus 959 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~~~~~ 1038 (1338)
.+....+.+++..+...+....... +.+....+ .++...+..++.++++........ .+.|.+..++.+
T Consensus 1040 ~e~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~G~~lv~~g~--it~g~l~~~~~~---- 1108 (1466)
T PTZ00265 1040 LEDYFCNLIEKAIDYSNKGQKRKTL---VNSMLWGF--SQSAQLFINSFAYWFGSFLIRRGT--ILVDDFMKSLFT---- 1108 (1466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHHH----
Confidence 8776666655544444332222211 11111111 111112223344444432211111 123443322211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHhhcCCCCCCccCCccCCC-CCCCCCCceEEeeeEEeCCCc--ccc
Q 000711 1039 VSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKW-NSTDYQDSISFSKLDIITPSQ--KLL 1115 (1338)
Q Consensus 1039 ~~~~~~~~~~~~~~~~~~~~~~~a~~Ri~~~~~~~~~~~~~~~~~~~~~~~~w-p~~~~~g~I~f~nV~f~yp~~--~~v 1115 (1338)
+.....+++.+......+.....+.+|++++++.+++.+.. ... .... +.....|.|+|+||+|+||+. .+|
T Consensus 1109 ~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~---~~~--~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~v 1183 (1466)
T PTZ00265 1109 FLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVR---DNG--GIRIKNKNDIKGKIEIMDVNFRYISRPNVPI 1183 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCC---CCc--ccccccCCCCCceEEEEEEEEECCCCCCCcc
Confidence 11122235566677788888889999999998654321110 000 0000 011235889999999999863 489
Q ss_pred ccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCC-------------------------------------------
Q 000711 1116 ARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPV------------------------------------------- 1152 (1338)
Q Consensus 1116 L~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~------------------------------------------- 1152 (1338)
|+|+||+|+|||++|||||||||||||+++|+|||+|
T Consensus 1184 L~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1263 (1466)
T PTZ00265 1184 YKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKE 1263 (1466)
T ss_pred ccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999998
Q ss_pred -----------CCceEEcCCCCCccc--cCCcccEEEEcCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccc
Q 000711 1153 -----------VSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTT 1219 (1338)
Q Consensus 1153 -----------~sG~I~idg~dI~~~--~~lr~~i~~VpQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~ 1219 (1338)
++|+|++||+||+++ ..+|++|+||||||+||+|||||||.|+.+.
T Consensus 1264 ~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~--------------------- 1322 (1466)
T PTZ00265 1264 GGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKED--------------------- 1322 (1466)
T ss_pred cccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCC---------------------
Confidence 699999999999998 4678899999999999999999999986321
Q ss_pred cCchHHHHHHHhhCCchhhhhhhcccCcccC-cccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHH
Q 000711 1220 NILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLA 1298 (1338)
Q Consensus 1220 ~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~ 1298 (1338)
..|++++++++.++++++++++|+||||.+ +.|.+|||||||||||||||+|+|+||||||||||||.++|+.+++.+
T Consensus 1323 -at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L 1401 (1466)
T PTZ00265 1323 -ATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTI 1401 (1466)
T ss_pred -CCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence 123444455555556667777899999998 478999999999999999999999999999999999999999998877
Q ss_pred Hh----cCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1299 KD----MGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1299 ~~----~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
.. .++|+|+||||+++++.+|++++|++|+
T Consensus 1402 ~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~ 1435 (1466)
T PTZ00265 1402 VDIKDKADKTIITIAHRIASIKRSDKIVVFNNPD 1435 (1466)
T ss_pred HHHhccCCCEEEEEechHHHHHhCCEEEEEeCCC
Confidence 54 3899999999999999999999998754
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-116 Score=1187.37 Aligned_cols=1108 Identities=16% Similarity=0.153 Sum_probs=664.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHH--HHHHHH--HHHHHHHHHHHHHHH
Q 000711 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMH--STSKYI--TGTLSLQFRKIVTKL 182 (1338)
Q Consensus 107 l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l--~~~l~~~~R~~lt~~ 182 (1338)
++..+++.++...+.+..|.+.+.+++.+.+++.+ ....+. .+++ ++..++. ....|. ..+++.+.|..
T Consensus 303 ~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~~-~~~~~~-~~~l-~~~~~~~~~~~~~~~~~~~~~~~~ir~~---- 375 (1622)
T PLN03130 303 FWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEPA-WIGYIY-AFSI-FVGVVLGVLCEAQYFQNVMRVGFRLRST---- 375 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-hHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 44455566777788888899999999888765522 111111 1111 1111111 112232 33556665544
Q ss_pred HHHHHhcccccccccccCC-CCCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhchhhHHHHHH-HHHHH
Q 000711 183 IHTRYFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWIL-AYVLG 260 (1338)
Q Consensus 183 l~~~~~~~~~~~~~~~~d~-~~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~l-~~~~~ 260 (1338)
++...+++.+..+...+++ ..++..+++++|++++.+... .+..+...++..++..+.++. ..++..++. +.+++
T Consensus 376 L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~--~lg~~~l~g~~v~~l 452 (1622)
T PLN03130 376 LVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQ--QLGVASLIGSLMLVL 452 (1622)
T ss_pred HHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 4455666676777666654 357889999999999887653 333333333333322222221 111111111 11111
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 261 AGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDF 340 (1338)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (1338)
...+..++.+...+...+..+...+......++..++++||+|++|+.+.+++++..++..+..++.. .. ..+..+
T Consensus 453 ~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~---~~-~~~~~~ 528 (1622)
T PLN03130 453 MFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQ---LL-SAFNSF 528 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHH
Confidence 11222345556666655555555555567778888999999999999998777665555444332221 11 111111
Q ss_pred HHHHHHHHHHHHHHHHh--HhcccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 341 LLKYLGATVAVILIIEP--FFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMV 418 (1338)
Q Consensus 341 ~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~ri~~~~~ 418 (1338)
+.......+.+ +.+.. +.+|. .+.|.. ++ +.+++..+..++..+...+..+.+...+.+|+.++++
T Consensus 529 ~~~~~~~~v~~-~~fg~~~~~~g~-----Lt~g~v--f~----~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~ 596 (1622)
T PLN03130 529 ILNSIPVLVTV-VSFGVFTLLGGD-----LTPARA--FT----SLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLL 596 (1622)
T ss_pred HHHHHHHHHHH-HHHHHHHHhCCC-----CCHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 11111111111 11111 11222 244432 22 2234445556777788888899999999999999987
Q ss_pred hhhhccccCCCCCCCCCCCCcCCCCcEEEEeEEEEcCC--CCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCC
Q 000711 419 ISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP 496 (1338)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~--~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~ 496 (1338)
.++....... .. ....+.|+++|++|.|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++
T Consensus 597 ~~e~~~~~~~---~~-----~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~ 668 (1622)
T PLN03130 597 AEERVLLPNP---PL-----EPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP 668 (1622)
T ss_pred CcccccccCC---cc-----cCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc
Confidence 5433211000 00 011246999999999975 3689999999999999999999999999999999999999
Q ss_pred CCc-cEEEeCCCCccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccc--
Q 000711 497 LVS-GHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI-- 573 (1338)
Q Consensus 497 ~~~-G~i~~~~~~~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-- 573 (1338)
|.+ |+|.+. ++|+||||+||+|++||||||.|+.+ .+++++.++++.|+|+++++.+|.++++
T Consensus 669 ~~~GG~I~l~-------~~Iayv~Q~p~LfngTIreNI~fg~~-------~d~e~y~~vl~a~~L~~di~~LP~Gd~T~I 734 (1622)
T PLN03130 669 PRSDASVVIR-------GTVAYVPQVSWIFNATVRDNILFGSP-------FDPERYERAIDVTALQHDLDLLPGGDLTEI 734 (1622)
T ss_pred cCCCceEEEc-------CeEEEEcCccccCCCCHHHHHhCCCc-------ccHHHHHHHHHHhCcHHHHHhCCCcccccc
Confidence 999 999874 47999999999999999999999864 3578999999999999999999987665
Q ss_pred -cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH-Hc--cCCeEEEEecChhhHhhcceEEEccC
Q 000711 574 -NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV-RA--MGTSCITISHRPALVAFHDVVLSLDG 649 (1338)
Q Consensus 574 -~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l-~~--~~~t~i~itH~~~~~~~~d~i~~l~~ 649 (1338)
+.|.+|||||||||+||||+|++|+++||||||||||+++++++++.+ +. .++|+|+|||+++.++.+|+|++|++
T Consensus 735 Ge~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~ 814 (1622)
T PLN03130 735 GERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHE 814 (1622)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeC
Confidence 468899999999999999999999999999999999999999987654 33 48999999999999999999999986
Q ss_pred CCceEEeecCCCcccccccchh-hccccc-cccchhhHHHHHHHHHhhcccccCCcccchhhhHHHhhCCCCCCCCCCCC
Q 000711 650 EGEWRVHDKRDGSSVVTKSGIN-MIKSSE-TDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHNVPLPV 727 (1338)
Q Consensus 650 ~g~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1338)
|. ..+.+...+......... ...... .+....... +... ................... ..............
T Consensus 815 -G~-i~e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 888 (1622)
T PLN03130 815 -GM-IKEEGTYEELSNNGPLFQKLMENAGKMEEYVEENG-EEED-DQTSSKPVANGNANNLKKD--SSSKKKSKEGKSVL 888 (1622)
T ss_pred -CE-EEEeCCHHHHHhcchhHHHHHHhcccccccccccc-cccc-ccccccccccccccccccc--ccccccccccchhh
Confidence 33 222221110000000000 000000 000000000 0000 0000000000000000000 00000000000000
Q ss_pred ccccccCcccchhhH-HhHHHHhhccccch--hhHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhcCHHHHHHHHHHH
Q 000711 728 FPQLKSAPRILPLRV-ADMFKVLVPTVFDK--QGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVS 804 (1338)
Q Consensus 728 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 804 (1338)
..+..++.+...+.+ ..+++.....+... ....++...+.++..+|++.|....... .+...+ +++++
T Consensus 889 ~~~e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~-------~~~~~~--~~~i~ 959 (1622)
T PLN03130 889 IKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPK-------THGPLF--YNLIY 959 (1622)
T ss_pred hhHHHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC-------CCchhH--HHHHH
Confidence 000011111111111 11111100000000 0000111122234567777766432110 010111 23334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-cchhhcccCCCCCCccchhHHHHHHHHHHHHHHHHHhh
Q 000711 805 VLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMV 883 (1338)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~~~-~ff~~~~~~~~~~~~~~Rls~D~~~l~~~l~~~~~~~i 883 (1338)
++.+++..+..+...++....+.+...++|.+++++.++.+ .||+.. ..+++.+|+++|++.++..++..+..++
T Consensus 960 ~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~----~~G~IlnR~s~Di~~id~~l~~~~~~~~ 1035 (1622)
T PLN03130 960 ALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTN----PLGRIINRFAKDLGDIDRNVAVFVNMFL 1035 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccC----CchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444455556677777888888888888864 888743 3467899999999999988776555544
Q ss_pred HhHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhcCccccccHHHHHhccc----hHHHHHHHHhhHHHhhhcCC
Q 000711 884 KPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGT----FRFMHERLRAHAESVAFFGG 959 (1338)
Q Consensus 884 ~~~~~i~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~----~r~~~~~~~~~~e~i~~~~~ 959 (1338)
..++.++.....+..+... ..++++++++...++... +.+..++.++.+.. ......+...+.++|++|+.
T Consensus 1036 ~~~~~~i~~~i~i~~~~~~--~~~~~~pl~~~~~~~~~~---~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~ 1110 (1622)
T PLN03130 1036 GQIFQLLSTFVLIGIVSTI--SLWAIMPLLVLFYGAYLY---YQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKA 1110 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcH
Confidence 4333222111111111100 000111111111111111 11122223333321 11222334457788999985
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhhhHHHHhhhhhHHHHHHHHHHHHhhcccch-hhhchHHHHHHHH
Q 000711 960 GAREKAMIESRFRELLEHSLLLL-----KKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRA-LVSTQGELAHALR 1033 (1338)
Q Consensus 960 ~~~e~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~l~~~l~ 1033 (1338)
+. .+.+.+.+..+...+.. ..+|+ +....++.. .+.+..+ .+.+...+... .....+.++..+.
T Consensus 1111 ~~----~f~~~~~~~~~~~~~~~~~~~~~~~wl-~~~l~~~~~----~~i~~~~-~~~v~~~~~~~~~~~~~~~~G~~ls 1180 (1622)
T PLN03130 1111 YD----RMAEINGRSMDNNIRFTLVNMSSNRWL-AIRLETLGG----LMIWLTA-SFAVMQNGRAENQAAFASTMGLLLS 1180 (1622)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH----HHHHHHH-HHHHHcccccccchhhhHHHHHHHH
Confidence 43 33444444444333221 22232 211111111 1111111 11111111000 0000122233332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHhhcCCCCCCccCCccCCCCCCCCCCceEEeeeEEeCCC-c
Q 000711 1034 FLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS-Q 1112 (1338)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ri~~~~~~~~~~~~~~~~~~~~~~~~wp~~~~~g~I~f~nV~f~yp~-~ 1112 (1338)
+ .......+..+......++....+++|+.++.+.+++.+.. .....+++.||. +|.|+|+||+|+|++ .
T Consensus 1181 ~----~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~--~~~~~~~~~wp~---~g~I~f~nVsf~Y~~~~ 1251 (1622)
T PLN03130 1181 Y----ALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLV--IENNRPPPGWPS---SGSIKFEDVVLRYRPEL 1251 (1622)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccc--ccCCCCCCCCCC---CCcEEEEEEEEEeCCCC
Confidence 2 22333445555566666777788999999998665432211 111223457886 689999999998854 5
Q ss_pred cccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEEEEcCCCCCCCCCHHH
Q 000711 1113 KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRD 1190 (1338)
Q Consensus 1113 ~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~~VpQdP~LF~GTIRe 1190 (1338)
++||+|+||+|+||||||||||||||||||+++|+|||+|++|+|.|||+||+++ +.+|++|++|||||+||+||||+
T Consensus 1252 ~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIre 1331 (1622)
T PLN03130 1252 PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRF 1331 (1622)
T ss_pred CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHH
Confidence 7899999999999999999999999999999999999999999999999999998 56788999999999999999999
Q ss_pred HhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC-cccCCCChhHHHHHHHHHH
Q 000711 1191 QIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARL 1269 (1338)
Q Consensus 1191 NL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARA 1269 (1338)
||++... ..|++++++++.++++++++++|+||||.+ +.|.+||||||||||||||
T Consensus 1332 NLd~~~~-----------------------~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARA 1388 (1622)
T PLN03130 1332 NLDPFNE-----------------------HNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARA 1388 (1622)
T ss_pred HhCcCCC-----------------------CCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHH
Confidence 9975321 246678888888888889999999999998 5789999999999999999
Q ss_pred hhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1270 FFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1270 lLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
|||+|+|||||||||+||.++|+.|++.+++ .+||+|+||||++++..+|++++|++|+
T Consensus 1389 LLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~ 1449 (1622)
T PLN03130 1389 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGR 1449 (1622)
T ss_pred HHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999998865 5999999999999999999999998764
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-115 Score=1179.35 Aligned_cols=1107 Identities=15% Similarity=0.150 Sum_probs=666.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 000711 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHST----SKYITGTLSLQFRKIVTKL 182 (1338)
Q Consensus 107 l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~l~~~~R~~lt~~ 182 (1338)
++..+++.++.+.+.+..|.+.+.+++.+.+.+.+. .... +++++++..++..+ ..+...+++.+.|..+
T Consensus 303 ~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~~~-~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l--- 376 (1495)
T PLN03232 303 FWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDPAW-VGYV--YAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTL--- 376 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-hHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 444455667788888888999999999887654321 1111 11122222222221 2223356666655544
Q ss_pred HHHHHhcccccccccccCCC-CCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhchhhHHHHHHHHH-HH
Q 000711 183 IHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYV-LG 260 (1338)
Q Consensus 183 l~~~~~~~~~~~~~~~~d~~-~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~l~~~-~~ 260 (1338)
+...+++.+.++...+++. .++..+|+++|++++.+.. ..+..+...++..++..+.++.. .++..++.+.+ ++
T Consensus 377 -~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~~~--lg~~~l~~~~v~~l 452 (1495)
T PLN03232 377 -VAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLYQQ--LGVASLFGSLILFL 452 (1495)
T ss_pred -HHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHH
Confidence 4555666666666666543 5688899999999988765 33333333333322222222211 11111111111 11
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 261 AGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDF 340 (1338)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (1338)
...+..++++...+...+.++...+......++.++++.||+|++|+.+.+++++..++..+..++.. ...++ ..+
T Consensus 453 ~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~---~~~~~-~~~ 528 (1495)
T PLN03232 453 LIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQ---LLSAF-NSF 528 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-HHH
Confidence 11122345566666666666666665567778888999999999999998777766555444433321 11111 111
Q ss_pred HHHHHHHHHHHHHHHHhHhccccc-CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000711 341 LLKYLGATVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVI 419 (1338)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~ri~~~~~~ 419 (1338)
+.......+ .++. +++... .+..+.|. +++ +..++..+..++..+...+..+.++..+.+|+.++++.
T Consensus 529 ~~~~~~~~~-~~~~----fg~~~v~~~~lt~g~--vf~----~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~ 597 (1495)
T PLN03232 529 ILNSIPVVV-TLVS----FGVFVLLGGDLTPAR--AFT----SLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLS 597 (1495)
T ss_pred HHHHHHHHH-HHHH----HHHHHHhCCCCCHHH--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 111111111 1111 111111 11224443 232 22344555667778888888999999999999999976
Q ss_pred hhhccccCCCCCCCCCCCCcCCCCcEEEEeEEEEcCC--CCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCC
Q 000711 420 SRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL 497 (1338)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~--~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~ 497 (1338)
+++..... .. .....+.++++|++|.|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|
T Consensus 598 ~~~~~~~~--~~------~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~ 669 (1495)
T PLN03232 598 EERILAQN--PP------LQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSH 669 (1495)
T ss_pred cccccccc--CC------cCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcc
Confidence 54321100 00 0011346999999999975 36899999999999999999999999999999999999999
Q ss_pred CccEEEeCCCCccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccc---c
Q 000711 498 VSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---N 574 (1338)
Q Consensus 498 ~~G~i~~~~~~~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~ 574 (1338)
++|.+.. ++++|+||||+||+|++||||||.|+.+ .+++++.++++.|+++++++.+|.++++ +
T Consensus 670 ~~G~i~~------~~~~Iayv~Q~p~Lf~gTIreNI~fg~~-------~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe 736 (1495)
T PLN03232 670 AETSSVV------IRGSVAYVPQVSWIFNATVRENILFGSD-------FESERYWRAIDVTALQHDLDLLPGRDLTEIGE 736 (1495)
T ss_pred cCCCEEE------ecCcEEEEcCccccccccHHHHhhcCCc-------cCHHHHHHHHHHhCCHHHHHhCCCCCCceecC
Confidence 9987642 3568999999999999999999999853 4678999999999999999999987665 4
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH-Hc--cCCeEEEEecChhhHhhcceEEEccCCC
Q 000711 575 WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV-RA--MGTSCITISHRPALVAFHDVVLSLDGEG 651 (1338)
Q Consensus 575 ~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l-~~--~~~t~i~itH~~~~~~~~d~i~~l~~~g 651 (1338)
.|.+|||||||||+||||+|++|+|+||||||||||+++++++++.+ .. .++|+|+||||++.++.+|+|++|++ |
T Consensus 737 ~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~-G 815 (1495)
T PLN03232 737 RGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSE-G 815 (1495)
T ss_pred CCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeC-C
Confidence 68899999999999999999999999999999999999999998764 33 58999999999999999999999986 3
Q ss_pred ceEEeecCCCcccccccchhh-ccccc-cccchhhHHHHHHHHHhhcccccCCcccchhhhHHHhhCCCCCCCCCCCCcc
Q 000711 652 EWRVHDKRDGSSVVTKSGINM-IKSSE-TDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHNVPLPVFP 729 (1338)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1338)
. ..+.....+.......... ..... .+.........+.. ............. ... ...............
T Consensus 816 ~-i~~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~ 887 (1495)
T PLN03232 816 M-IKEEGTFAELSKSGSLFKKLMENAGKMDATQEVNTNDENI---LKLGPTVTIDVSE--RNL--GSTKQGKRGRSVLVK 887 (1495)
T ss_pred E-EEEecCHHHHHhcchhHHHHHHhccccccccccccccccc---ccccccccccccc--ccc--ccccccccchhhhhh
Confidence 2 2332211110000000000 00000 00000000000000 0000000000000 000 000000000000000
Q ss_pred ccccCcccchhhH-HhHHHHhhccccch--hhHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhcCHHHHHHHHHHHHH
Q 000711 730 QLKSAPRILPLRV-ADMFKVLVPTVFDK--QGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVL 806 (1338)
Q Consensus 730 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 806 (1338)
+..++.+...+.+ ..+++.....+... ....+...+...+..+|++.|....... .... ..+++++++
T Consensus 888 ~e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~-------~~~~--~~~l~~y~~ 958 (1495)
T PLN03232 888 QEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPK-------SYSP--GFYIVVYAL 958 (1495)
T ss_pred HHHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-------CCCc--chHHHHHHH
Confidence 0011111111111 11111110000000 0000111122234567777775432100 0001 113344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-ccchhhcccCCCCCCccchhHHHHHHHHHHHHHHHHHhhHh
Q 000711 807 QSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRK-NSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKP 885 (1338)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~~-~~ff~~~~~~~~~~~~~~Rls~D~~~l~~~l~~~~~~~i~~ 885 (1338)
.+++..+..+...++....+.+...+++++++++.++. +.||+..+ .+++.+|+++|++.++..++..+..++..
T Consensus 959 l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~----~G~ilnr~s~Di~~id~~l~~~~~~~~~~ 1034 (1495)
T PLN03232 959 LGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNP----TGRVINRFSKDIGDIDRNVANLMNMFMNQ 1034 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCC----chHHHHHhHhhHHHHHHHHHHHHHHHHHH
Confidence 44444444444455556667777888888888888886 47887433 46689999999999999887766555443
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhcCccccccHHHHHhccc----hHHHHHHHHhhHHHhhhcCChH
Q 000711 886 SVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGT----FRFMHERLRAHAESVAFFGGGA 961 (1338)
Q Consensus 886 ~~~i~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~----~r~~~~~~~~~~e~i~~~~~~~ 961 (1338)
++.++.....+..+... .+++.+++++...+.... +.+..++.++.+.. ......+...+.++|++|+.++
T Consensus 1035 ~~~~i~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~ 1109 (1495)
T PLN03232 1035 LWQLLSTFALIGTVSTI--SLWAIMPLLILFYAAYLY---YQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYD 1109 (1495)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHH
Confidence 32221111111111100 001111111111111111 11112222222222 1122233445678899998654
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhhhHHHHhhhhhHHHHHHHHHHHHhhcccchh-hhchHHHHHHHHHH
Q 000711 962 REKAMIESRFRELLEHSLLLL-----KKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRAL-VSTQGELAHALRFL 1035 (1338)
Q Consensus 962 ~e~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~l~~~l~~~ 1035 (1338)
+ +.+.+.+..+...+.. ...|+. ....++. ..+.+.... +.+...+..+. ....+.++.++
T Consensus 1110 ~----~~~~~~~~~~~~~~~~~~~~~~~~wl~-~~~~~~~----~~~~~~~~~-~~v~~~~~~~~~~~~~~~~g~~~--- 1176 (1495)
T PLN03232 1110 R----MAKINGKSMDNNIRFTLANTSSNRWLT-IRLETLG----GVMIWLTAT-FAVLRNGNAENQAGFASTMGLLL--- 1176 (1495)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH----HHHHHHHHH-HHHHccccccccccchHHHHHHH---
Confidence 3 3344444444333222 122321 1111111 111111111 11111111000 00011112122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHhhcCCCCCCccCCccCCCCCCCCCCceEEeeeEEeCC-Cccc
Q 000711 1036 ASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITP-SQKL 1114 (1338)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ri~~~~~~~~~~~~~~~~~~~~~~~~wp~~~~~g~I~f~nV~f~yp-~~~~ 1114 (1338)
........++..+......+.....+++||.++.+.+++.+.. .....+++.||. +|.|+|+||+|+|+ +.++
T Consensus 1177 -~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~--~~~~~~~~~~p~---~g~I~f~nVsf~Y~~~~~~ 1250 (1495)
T PLN03232 1177 -SYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAI--IENNRPVSGWPS---RGSIKFEDVHLRYRPGLPP 1250 (1495)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc--ccCCCCCCCCCC---CCcEEEEEEEEEECCCCCc
Confidence 2223334455666666677777788999999998765432211 011123456886 68999999999885 4578
Q ss_pred cccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEEEEcCCCCCCCCCHHHHh
Q 000711 1115 LARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQI 1192 (1338)
Q Consensus 1115 vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~~VpQdP~LF~GTIReNL 1192 (1338)
||+|+||+|+||||||||||||||||||+++|+|+|+|++|+|.|||+||+++ +.+|++|++|||||+||+|||||||
T Consensus 1251 vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL 1330 (1495)
T PLN03232 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNI 1330 (1495)
T ss_pred ccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHc
Confidence 99999999999999999999999999999999999999999999999999988 5678899999999999999999999
Q ss_pred cCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC-cccCCCChhHHHHHHHHHHhh
Q 000711 1193 IYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFF 1271 (1338)
Q Consensus 1193 ~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlL 1271 (1338)
++... ..|++++++++.++++++++++|+||||.+ +.|.+|||||||||||||||+
T Consensus 1331 ~~~~~-----------------------~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALL 1387 (1495)
T PLN03232 1331 DPFSE-----------------------HNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALL 1387 (1495)
T ss_pred CCCCC-----------------------CCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHH
Confidence 85321 246677888888888889999999999998 578999999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1272 HKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1272 r~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
|+|+|||||||||+||.++|+.|++.+++ .++|+|+||||++++..+|++++|++|+
T Consensus 1388 r~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1446 (1495)
T PLN03232 1388 RRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQ 1446 (1495)
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999998864 5999999999999999999999997764
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-112 Score=1153.82 Aligned_cols=1110 Identities=15% Similarity=0.145 Sum_probs=676.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcChhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISE--NILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIH 184 (1338)
Q Consensus 107 l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~R~~lt~~l~ 184 (1338)
++..+++.++.+.+++..|.+.+.+++.+.+...+....++.. .++..++.+++.....|...+++.++|..+..
T Consensus 319 ~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~--- 395 (1522)
T TIGR00957 319 FLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMG--- 395 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 4445566777888888899999999887765433322111111 11111112223333455677778886665554
Q ss_pred HHHhcccccccccccCCC-CCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhchhhHHHHH-HHHHHHHH
Q 000711 185 TRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWI-LAYVLGAG 262 (1338)
Q Consensus 185 ~~~~~~~~~~~~~~~d~~-~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~-l~~~~~~~ 262 (1338)
..|++.+.++...+++. .++..+++++|++++.+.. ..+..+...++..++..+.++ ..++...++ ++.+++..
T Consensus 396 -~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~--~~~g~~~l~~l~~~~~~~ 471 (1522)
T TIGR00957 396 -AVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLW--LNLGPSVLAGVAVMVLMV 471 (1522)
T ss_pred -HHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHH
Confidence 45566666676666554 5689999999999987743 334333334333333333332 222322222 22222223
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 263 TMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLL 342 (1338)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (1338)
.+..++++.+.+...+.++...+......++.++++.||+|++|+.+.+++++..++..+..++... ...+..+..
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~----~~~~~~~~~ 547 (1522)
T TIGR00957 472 PLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAY----LHAVGTFTW 547 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 3334456666666555555555555667788889999999999999988777766555443322211 111111111
Q ss_pred HHHHHHHHHHHHHHhHhcccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000711 343 KYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRE 422 (1338)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~ri~~~~~~~~~ 422 (1338)
......+. ++.+..|.. .....+++....++. .+++..+..++..+...+..+.+...+.+||.++++.+++
T Consensus 548 ~~~~~~~~-~~~f~~~~~---~~~~~~l~~~~~f~~----l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~ 619 (1522)
T TIGR00957 548 VCTPFLVA-LITFAVYVT---VDENNILDAEKAFVS----LALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEEL 619 (1522)
T ss_pred HHHHHHHH-HHHHHHHHH---hcCCCCcCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 10111111 111111110 000112222222222 2233344567888888889999999999999999875433
Q ss_pred ccccCCCCCCCCCCCCcCCCCcEEEEeEEEEcCC-CCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccE
Q 000711 423 LSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501 (1338)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~-~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~ 501 (1338)
... . ..... ....+.+.++++|++|.|++ .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+
T Consensus 620 ~~~-~--~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~ 694 (1522)
T TIGR00957 620 EPD-S--IERRT--IKPGEGNSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 694 (1522)
T ss_pred ccc-c--ccccc--cCCCCCCcEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcE
Confidence 211 0 00000 00011247999999999975 368999999999999999999999999999999999999999999
Q ss_pred EEeCCCCccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccc---cCCCC
Q 000711 502 IAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDE 578 (1338)
Q Consensus 502 i~~~~~~~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~ 578 (1338)
|.++| +|+||||+||++++|++|||.++.+ .+++++.++++.|++.++++.+|.++++ +.|.+
T Consensus 695 i~~~g-------~i~yv~Q~~~l~~~Ti~eNI~~g~~-------~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~ 760 (1522)
T TIGR00957 695 VHMKG-------SVAYVPQQAWIQNDSLRENILFGKA-------LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVN 760 (1522)
T ss_pred EEECC-------EEEEEcCCccccCCcHHHHhhcCCc-------cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCC
Confidence 99986 6999999999999999999999853 2456788899999999999998876544 46889
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc-----cCCeEEEEecChhhHhhcceEEEccCCCce
Q 000711 579 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA-----MGTSCITISHRPALVAFHDVVLSLDGEGEW 653 (1338)
Q Consensus 579 LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~-----~~~t~i~itH~~~~~~~~d~i~~l~~~g~~ 653 (1338)
||||||||++||||+|++|++++||||||+||+++++++++.+.+ .++|+|+|||+++.+..+|+|++|++ |.
T Consensus 761 LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~-G~- 838 (1522)
T TIGR00957 761 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSG-GK- 838 (1522)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecC-Ce-
Confidence 999999999999999999999999999999999999999998742 37899999999999999999999986 33
Q ss_pred EEeecCCCcccccccchh-hcc---ccccccc-hhh-------HHHHHHH-HH--h-h--cccccCC----cccchhhhH
Q 000711 654 RVHDKRDGSSVVTKSGIN-MIK---SSETDRQ-SDA-------MAVEQAF-VT--A-K--KDSAFSN----PKAQSYVSE 711 (1338)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~-~~~-------~~~~~~~-~~--~-~--~~~~~~~----~~~~~~~~~ 711 (1338)
..+............... ... ..+.... .+. ...+... .. . . ....... .........
T Consensus 839 i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 918 (1522)
T TIGR00957 839 ISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQS 918 (1522)
T ss_pred EEeeCCHHHHHhcchhHHHHHHhhccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccc
Confidence 222211000000000000 000 0000000 000 0000000 00 0 0 0000000 000000000
Q ss_pred HHh-hCCCCCCCCCC-C---CccccccCcccchhhHHhHHHHhhccccchh-hH----HHHHHHHHHHHHHHHHHHHHhh
Q 000711 712 VIA-ASPIADHNVPL-P---VFPQLKSAPRILPLRVADMFKVLVPTVFDKQ-GA----QLLAVAFLVVSRTWISDRIASL 781 (1338)
Q Consensus 712 ~~~-~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~l~~~~~~~~~~~wl~~~~~~~ 781 (1338)
... .....+..... . ...+..+..+...+. .++.++....... .. .+....+..+..+|++.|....
T Consensus 919 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~---~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~ 995 (1522)
T TIGR00957 919 RHHGSSAELQKAEAKEETWKLMEADKAQTGQVELS---VYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDP 995 (1522)
T ss_pred ccccccccccccccccchhhhHHHHHHhcCcccHH---HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 000 00000000000 0 000000001111111 1111111110000 00 0011122235567777776421
Q ss_pred cchHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-cchhhcccCCCCCCc
Q 000711 782 NGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDA 860 (1338)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~~~-~ff~~~~~~~~~~~~ 860 (1338)
.. ..+......+++++++.+++..+..+...++....+.+...++|+++++++++.+ .||+.. ..+++
T Consensus 996 ~~-------~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~----~~G~i 1064 (1522)
T TIGR00957 996 MV-------NGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERT----PSGNL 1064 (1522)
T ss_pred cc-------cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccC----ChHHH
Confidence 10 0000001112334444444444444444455556677778888889998888864 788743 34668
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhHhHHHH-------HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhcCccccccHHH
Q 000711 861 DQRITHDLEKLTTDLSGLVTGMVKPSVDI-------LWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSRE 933 (1338)
Q Consensus 861 ~~Rls~D~~~l~~~l~~~~~~~i~~~~~i-------~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 933 (1338)
.+|+++|++.++..++..+..++..++.+ ++..|.+.++. ++++++++++. +. +.+..++.
T Consensus 1065 lnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~----~~~~~~~~~~~----~~----~~~~~r~~ 1132 (1522)
T TIGR00957 1065 VNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVII----PPLGLLYFFVQ----RF----YVASSRQL 1132 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH----HH----HHHHHHHH
Confidence 99999999999988886655554433222 22222221111 11111111111 11 11122232
Q ss_pred HHhccch----HHHHHHHHhhHHHhhhcCChHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhhhhHHHHhhhhhHHH
Q 000711 934 QQLEGTF----RFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLL-----LKKKWLFGILDDFVTKQLPHNVT 1004 (1338)
Q Consensus 934 ~~le~~~----r~~~~~~~~~~e~i~~~~~~~~e~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 1004 (1338)
++++... .....+...+.++|++|+.+.. +.+.+.+..+...+. ...+|+ +...+++... +.
T Consensus 1133 ~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~----f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~ 1203 (1522)
T TIGR00957 1133 KRLESVSRSPVYSHFNETLLGVSVIRAFEEQER----FIHQSDLKVDENQKAYYPSIVANRWL-AVRLECVGNC----IV 1203 (1522)
T ss_pred HHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH----HH
Confidence 3333221 1222333456788999986554 334444444433322 223333 2222222111 11
Q ss_pred HHHHHHHHHhhcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHhhcCCCCCCcc
Q 000711 1005 WGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEIS 1084 (1338)
Q Consensus 1005 ~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ri~~~~~~~~~~~~~~~~~~ 1084 (1338)
..+ ..+.+...+. .+.|.++.++.+. ..+..++..+......+.....+++||.++.+.+++.+. ....
T Consensus 1204 ~~~-~~~~v~~~~~----~~~g~l~~~l~~~----~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~--~~~~ 1272 (1522)
T TIGR00957 1204 LFA-ALFAVISRHS----LSAGLVGLSVSYS----LQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPW--QIQE 1272 (1522)
T ss_pred HHH-HHHHHHhcCC----CCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc--cccC
Confidence 111 1111111111 2355555555443 234456677777788888888999999999865443221 0111
Q ss_pred CCccCCCCCCCCCCceEEeeeEEeCCC-ccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCC
Q 000711 1085 GSSQHKWNSTDYQDSISFSKLDIITPS-QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQH 1163 (1338)
Q Consensus 1085 ~~~~~~wp~~~~~g~I~f~nV~f~yp~-~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~d 1163 (1338)
..++..||. +|.|+|+||+|+||+ .++||+|+||+|+||||||||||||||||||+++|+|||||++|+|.|||+|
T Consensus 1273 ~~~~~~wp~---~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~d 1349 (1522)
T TIGR00957 1273 TAPPSGWPP---RGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLN 1349 (1522)
T ss_pred CCCCCCCCC---CCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEE
Confidence 224457886 689999999999975 4689999999999999999999999999999999999999999999999999
Q ss_pred Cccc--cCCcccEEEEcCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhh
Q 000711 1164 IDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLER 1241 (1338)
Q Consensus 1164 I~~~--~~lr~~i~~VpQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~ 1241 (1338)
|+++ +.+|++|++|||||+||+||||+||+ |.. +..|++++++++.+++++++++
T Consensus 1350 I~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLd-p~~----------------------~~sdeei~~al~~a~l~~~I~~ 1406 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQDPVLFSGSLRMNLD-PFS----------------------QYSDEEVWWALELAHLKTFVSA 1406 (1522)
T ss_pred ccccCHHHHHhcCeEECCCCcccCccHHHHcC-ccc----------------------CCCHHHHHHHHHHcCcHHHHhh
Confidence 9998 56788999999999999999999997 432 1246677888888888889999
Q ss_pred hcccCcccC-cccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCcccc
Q 000711 1242 EEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFH 1318 (1338)
Q Consensus 1242 ~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i~~~ 1318 (1338)
+|+||||.+ +.|.+|||||||||||||||||+|||||||||||+||.++|+.|++.+++ .++|||+||||++++..+
T Consensus 1407 lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~ 1486 (1522)
T TIGR00957 1407 LPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDY 1486 (1522)
T ss_pred CccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhC
Confidence 999999998 57899999999999999999999999999999999999999999998864 599999999999999999
Q ss_pred cceEEEecCC
Q 000711 1319 SLELRLIDGE 1328 (1338)
Q Consensus 1319 d~~l~l~~g~ 1328 (1338)
|++++|++|+
T Consensus 1487 DrIlVld~G~ 1496 (1522)
T TIGR00957 1487 TRVIVLDKGE 1496 (1522)
T ss_pred CEEEEEECCE
Confidence 9999998764
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-107 Score=1099.69 Aligned_cols=1124 Identities=16% Similarity=0.141 Sum_probs=656.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcChhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLC---FLLSTMHSTSKYITGTLSLQFRKIVTKLI 183 (1338)
Q Consensus 107 l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~R~~lt~~l 183 (1338)
+++.+++.++..++.+..|.+.+.+++.+.+.+....+. ++..++++ ++.+++.....|+..+++.++|..+...+
T Consensus 246 ~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~~~~g-~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~r~~L~~~i 324 (1560)
T PTZ00243 246 VWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRG-LGLVLTLFLTQLIQSVCLHRFYYISIRCGLQYRSALNALI 324 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666778888899999999999998875544321111 11111111 12223344466888899999888888777
Q ss_pred HHHHhccccccccccc---CCCCCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHH
Q 000711 184 HTRYFENMAYYKISHV---DGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLG 260 (1338)
Q Consensus 184 ~~~~~~~~~~~~~~~~---d~~~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~l~~~~~ 260 (1338)
.++.++ .+.... +...++..+.++.|++++.+....+ ..+...++..++..+.|+....| .+++.++.+++
T Consensus 325 f~K~l~----ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~-~~l~~~Pl~li~~~~lL~~~lG~-~al~gv~vl~v 398 (1560)
T PTZ00243 325 FEKCFT----ISSKSLAQPDMNTGRIINMMSTDVERINSFMQYC-MYLWSSPMVLLLSILLLSRLVGW-CALMAVAVLLV 398 (1560)
T ss_pred HHHHHh----CChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHH
Confidence 766653 222222 1234677889999999988775433 33334444433333334332232 22222222222
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 261 AGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDF 340 (1338)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (1338)
...+..++++...+...+..+....--....++.++++.||+|++|+.+.+++++..++..+..++...... +..+
T Consensus 399 ~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~----~~~~ 474 (1560)
T PTZ00243 399 TLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARV----ATSF 474 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 222333445554444333333333333456777789999999999999998887766555554433222211 1111
Q ss_pred HHHHHHHHHHHHHHHHh-HhcccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000711 341 LLKYLGATVAVILIIEP-FFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVI 419 (1338)
Q Consensus 341 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~ri~~~~~~ 419 (1338)
+.......+..+.+... ..++. .+.+. +++. ..++..+..++..+...+..+.++..+.+||.++++.
T Consensus 475 ~~~~~p~l~~~~~f~~y~~~g~~-----Lt~~~--vft~----laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~ 543 (1560)
T PTZ00243 475 VNNATPTLMIAVVFTVYYLLGHE-----LTPEV--VFPT----IALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLEC 543 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC-----CCHHH--HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 11111111111111100 11222 23332 2322 2334444457777777888889999999999999975
Q ss_pred hhhcc----c-cC-------CCC--C-----CC------------------C---------------CCCCcCCCCcEEE
Q 000711 420 SRELS----I-ED-------KSP--Q-----RN------------------G---------------SRNYFSEANYIEF 447 (1338)
Q Consensus 420 ~~~~~----~-~~-------~~~--~-----~~------------------~---------------~~~~~~~~~~i~~ 447 (1338)
++... . .+ ... . .+ . ........+.+.+
T Consensus 544 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (1560)
T PTZ00243 544 DNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVV 623 (1560)
T ss_pred ccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccc
Confidence 43100 0 00 000 0 00 0 0000000123566
Q ss_pred EeEEEEcC---------------------------------------CCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHH
Q 000711 448 SGVKVVTP---------------------------------------TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLF 488 (1338)
Q Consensus 448 ~~v~~~~~---------------------------------------~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl 488 (1338)
+|+++.+| +++++|+|+||+|++|++++|+||||||||||+
T Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL 703 (1560)
T PTZ00243 624 EDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLL 703 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHH
Confidence 66655422 235699999999999999999999999999999
Q ss_pred HHHcCCCCCCccEEEeCCCCccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCC
Q 000711 489 RVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYP 568 (1338)
Q Consensus 489 ~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 568 (1338)
++|+|+++|++|+|.++ ++|+||||+|+++++|++|||.++.. .+.+++.++++.++++++++.+|
T Consensus 704 ~~i~G~~~~~~G~i~~~-------~~i~yv~Q~~~l~~~Tv~enI~~~~~-------~~~~~~~~~~~~~~l~~~l~~l~ 769 (1560)
T PTZ00243 704 QSLLSQFEISEGRVWAE-------RSIAYVPQQAWIMNATVRGNILFFDE-------EDAARLADAVRVSQLEADLAQLG 769 (1560)
T ss_pred HHHhcCCCCCCcEEEEC-------CeEEEEeCCCccCCCcHHHHHHcCCh-------hhHHHHHHHHHHhhhHHHHHHhh
Confidence 99999999999999874 37999999999999999999999742 23456788899999999999987
Q ss_pred CCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH---ccCCeEEEEecChhhHhhcc
Q 000711 569 PEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALVAFHD 642 (1338)
Q Consensus 569 ~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~---~~~~t~i~itH~~~~~~~~d 642 (1338)
.+..+ +.|.+|||||||||+||||++++|+++|||||||+||+++++++++.+. ..|+|+|+|||+++.+..+|
T Consensus 770 ~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad 849 (1560)
T PTZ00243 770 GGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRAD 849 (1560)
T ss_pred ccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCC
Confidence 65443 4578999999999999999999999999999999999999988877542 24899999999999999999
Q ss_pred eEEEccCCCceEEeecCCCcccccccchhhcccccc-ccch-hhHHHHHHHHHhhcccccCCcccchhhhHHH-hhCC-C
Q 000711 643 VVLSLDGEGEWRVHDKRDGSSVVTKSGINMIKSSET-DRQS-DAMAVEQAFVTAKKDSAFSNPKAQSYVSEVI-AASP-I 718 (1338)
Q Consensus 643 ~i~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~ 718 (1338)
+|++|+++ .. ....... ................ .... +.....+........................ .... .
T Consensus 850 ~ii~l~~G-~i-~~~G~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 926 (1560)
T PTZ00243 850 YVVALGDG-RV-EFSGSSA-DFMRTSLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGA 926 (1560)
T ss_pred EEEEEECC-EE-EEecCHH-HHHhChHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999863 22 2211110 0000000000000000 0000 0000000000000000000000000000000 0000 0
Q ss_pred CCCCCCCCCccccccCcccchhhHHhHHHHhhccccchhhHHHH----------HHHHHHHHHHHHHHHHHhhcchHHHH
Q 000711 719 ADHNVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLL----------AVAFLVVSRTWISDRIASLNGTTVKY 788 (1338)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------~~~~~~~~~~wl~~~~~~~~~~~~~~ 788 (1338)
..+...........+..+..++.. ++.++. ..++... ...+..+..+|++.|......
T Consensus 927 ~~~~~~~~l~~~e~~~~g~v~~~~---y~~Y~~----~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~----- 994 (1560)
T PTZ00243 927 ALDAAAGRLMTREEKASGSVPWST---YVAYLR----FCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFK----- 994 (1560)
T ss_pred ccccccchhhhHHHHhcCcccHHH---HHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-----
Confidence 000000000000000111112211 111111 1111110 111223455677766542110
Q ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-cchhhcccCCCCCCccchhHHH
Q 000711 789 VLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHD 867 (1338)
Q Consensus 789 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~~~-~ff~~~~~~~~~~~~~~Rls~D 867 (1338)
.+...+ ++++++..++..+......+...........++|+.+++++++.+ .||+.. ..+++.+|+++|
T Consensus 995 ---~~~~~~---l~~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~----~~G~ilnR~s~D 1064 (1560)
T PTZ00243 995 ---LSAATY---LYVYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTT----PLGRILNRFSRD 1064 (1560)
T ss_pred ---CCcccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCC----CccHHHHHHHhh
Confidence 011111 222222222222111111112222333345678888888888764 788844 346689999999
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhcCccccccHHHHHhcc----chHHH
Q 000711 868 LEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEG----TFRFM 943 (1338)
Q Consensus 868 ~~~l~~~l~~~~~~~i~~~~~i~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~----~~r~~ 943 (1338)
++.++..++..+..++..++.++.....+...... .++++++++++...+.+ .+....++.++.+. .....
T Consensus 1065 i~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~-~~~~~i~~~~~~~~i~~----~~~~~~r~~~r~~~~~~s~l~s~ 1139 (1560)
T PTZ00243 1065 IDILDNTLPMSYLYLLQCLFSICSSILVTSASQPF-VLVALVPCGYLYYRLMQ----FYNSANREIRRIKSVAKSPVFTL 1139 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhcHHHHH
Confidence 99999888765555444333222111111111000 00001111111111111 12222333333222 22233
Q ss_pred HHHHHhhHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhhhHHHHHHHHHHHHhhcccchhhh
Q 000711 944 HERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVS 1023 (1338)
Q Consensus 944 ~~~~~~~~e~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1023 (1338)
..+...+.++|++|+.+....+.+.+..+...+..........|......++...+...+. +...++. ..+.. ..
T Consensus 1140 ~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~--~~~~~~~-~~~~~--~~ 1214 (1560)
T PTZ00243 1140 LEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIA--LIGVIGT-MLRAT--SQ 1214 (1560)
T ss_pred HHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-HhccC--CC
Confidence 3444557889999998776665555555555444333333333333333332211111111 1111111 00000 01
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHhhcCCCC-C---------------------
Q 000711 1024 TQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGD-D--------------------- 1081 (1338)
Q Consensus 1024 ~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ri~~~~~~~~~~~~~~-~--------------------- 1081 (1338)
+.|.++.++.+ ..+...++..+......+.....+++||.++.+..++++... .
T Consensus 1215 ~~g~l~~~l~~----a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1290 (1560)
T PTZ00243 1215 EIGLVSLSLTM----AMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVV 1290 (1560)
T ss_pred CHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccc
Confidence 23333333322 234455667777777788888899999999986432211000 0
Q ss_pred CccCCccCCCCCCCCCCceEEeeeEEeCCC-ccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcC
Q 000711 1082 EISGSSQHKWNSTDYQDSISFSKLDIITPS-QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKP 1160 (1338)
Q Consensus 1082 ~~~~~~~~~wp~~~~~g~I~f~nV~f~yp~-~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~id 1160 (1338)
..+..++..||.....|.|+|+||+|+|++ .++||+|+||+|+||||||||||||||||||+++|+|||+|++|+|.||
T Consensus 1291 ~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~ID 1370 (1560)
T PTZ00243 1291 IEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVN 1370 (1560)
T ss_pred cccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence 000111223443223689999999999976 4679999999999999999999999999999999999999999999999
Q ss_pred CCCCccc--cCCcccEEEEcCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhh
Q 000711 1161 SQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYL 1238 (1338)
Q Consensus 1161 g~dI~~~--~~lr~~i~~VpQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~ 1238 (1338)
|+||+++ +.+|++|++|||||+||+||||+||+ |.. +..|++++++++.++++++
T Consensus 1371 G~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNId-p~~----------------------~~sdeeI~~Al~~a~l~~~ 1427 (1560)
T PTZ00243 1371 GREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVD-PFL----------------------EASSAEVWAALELVGLRER 1427 (1560)
T ss_pred CEEcccCCHHHHHhcceEECCCCccccccHHHHhC-ccc----------------------CCCHHHHHHHHHHCCChHH
Confidence 9999987 46788999999999999999999997 432 1246677888888888888
Q ss_pred hhhhcccCcccC-cccCCCChhHHHHHHHHHHhhcC-CCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCC
Q 000711 1239 LEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHK-PKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPAL 1314 (1338)
Q Consensus 1239 i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~-p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~ 1314 (1338)
++++|+||||.+ +.|.+||||||||||||||||++ |+|||||||||+||.++|+.|++.+++ .++|+|+||||+++
T Consensus 1428 I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~t 1507 (1560)
T PTZ00243 1428 VASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHT 1507 (1560)
T ss_pred HhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHH
Confidence 899999999998 57899999999999999999996 899999999999999999999998764 59999999999999
Q ss_pred cccccceEEEecCC
Q 000711 1315 IPFHSLELRLIDGE 1328 (1338)
Q Consensus 1315 i~~~d~~l~l~~g~ 1328 (1338)
+..+|++++|++|+
T Consensus 1508 i~~~DrIlVLd~G~ 1521 (1560)
T PTZ00243 1508 VAQYDKIIVMDHGA 1521 (1560)
T ss_pred HHhCCEEEEEECCE
Confidence 99999999997764
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-106 Score=1089.10 Aligned_cols=1116 Identities=16% Similarity=0.163 Sum_probs=658.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcChhH-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 108 LALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPL-FFQ--LISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIH 184 (1338)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~R~~lt~~l~ 184 (1338)
++..++.++...+.+..|.+.+.+++.+...+.+. ... +++..++..++..++.....|....++.++|..+...+.
T Consensus 83 ~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy 162 (1490)
T TIGR01271 83 VFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIY 162 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444456777788888888888888774322221 111 111111111122233444667778888887777766555
Q ss_pred HHHhcccccccccccCC-CCCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHH
Q 000711 185 TRYFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGT 263 (1338)
Q Consensus 185 ~~~~~~~~~~~~~~~d~-~~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~l~~~~~~~~ 263 (1338)
+ +.+..+...+++ ..+...+++++|++++.+....+ ..+...++.++++.+.++....| ..++.++.+++...
T Consensus 163 ~----K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~~G~-~~l~~l~v~~~~~~ 236 (1490)
T TIGR01271 163 K----KTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWELLEV-NGFCGLGFLILLAL 236 (1490)
T ss_pred H----HHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 4 455555555543 35688899999999988865543 23333344344444444333222 22222333333444
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 264 MMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLK 343 (1338)
Q Consensus 264 ~~~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (1338)
+..++++.+.+...+.++...+.-....++.++++.||+|++|+.+.+++++..++..+..++..... .+...+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~----~~~~~~~- 311 (1490)
T TIGR01271 237 FQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLR----YFYSSAF- 311 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH-
Confidence 44556666666655555444444456778888999999999999998777765555544433322111 1111111
Q ss_pred HHHHHHHHHHHHHhHhcccccCCcchhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000711 344 YLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSL-GTLSISSRRLNRLSGYADRIHELMVISRE 422 (1338)
Q Consensus 344 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l-~~l~~~~~~l~~~~~~~~ri~~~~~~~~~ 422 (1338)
+....+..++.+..|.. ....+.+. +++.+ +++..+..++ ..+...+..+.++..+.+||.++++.++.
T Consensus 312 ~~~~~~~~~~~f~~y~~----~~~~~~~~--~ft~l----al~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~ 381 (1490)
T TIGR01271 312 FFSGFFVVFLSVVPYAL----IKGIILRR--IFTTI----SYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEY 381 (1490)
T ss_pred HHHHHHHHHHHHHHHHH----hCCCcHHH--HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 11111111111111110 11112322 22222 2222222243 24566677788899999999999975432
Q ss_pred ccccCCCCCCCCCCCCcCCCCcEEEEeEEEEcCC---------------------------------CCeeeeeeeEEEe
Q 000711 423 LSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT---------------------------------GNVLVENLTLKVE 469 (1338)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~---------------------------------~~~~l~~~sl~i~ 469 (1338)
.... . . .....++++|++|.|+. .+++|+|+||+|+
T Consensus 382 ~~~~-~----~------~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~ 450 (1490)
T TIGR01271 382 KTLE-Y----N------LTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLE 450 (1490)
T ss_pred cccc-c----c------CCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEEC
Confidence 1100 0 0 01124666777666632 1468999999999
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHH
Q 000711 470 PGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHG 549 (1338)
Q Consensus 470 ~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~ 549 (1338)
+||+++|+||||||||||+++|+|+++|++|+|.++| +|+||||+||++++|++|||.|+.. .+++
T Consensus 451 ~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------~iayv~Q~~~l~~~Ti~eNI~~g~~-------~~~~ 516 (1490)
T TIGR01271 451 KGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------RISFSPQTSWIMPGTIKDNIIFGLS-------YDEY 516 (1490)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------EEEEEeCCCccCCccHHHHHHhccc-------cchH
Confidence 9999999999999999999999999999999999987 6999999999999999999999853 2345
Q ss_pred HHHHHHHHcCCchHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH-Hc--
Q 000711 550 GMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV-RA-- 623 (1338)
Q Consensus 550 ~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l-~~-- 623 (1338)
++.++++.|+|.++++.+|.++.+ +.|.+|||||||||+||||+|++|+++||||||||||+++++++++.+ .+
T Consensus 517 ~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~ 596 (1490)
T TIGR01271 517 RYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM 596 (1490)
T ss_pred HHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 678889999999999998876544 357899999999999999999999999999999999999999999853 33
Q ss_pred cCCeEEEEecChhhHhhcceEEEccCCCceEEeecCCCcccccccch----------hh------------------cc-
Q 000711 624 MGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSSVVTKSGI----------NM------------------IK- 674 (1338)
Q Consensus 624 ~~~t~i~itH~~~~~~~~d~i~~l~~~g~~~~~~~~~~~~~~~~~~~----------~~------------------~~- 674 (1338)
.++|+|+|||+++.+..||+|++|+++ .. ................ .. ..
T Consensus 597 ~~~tvilvtH~~~~~~~ad~ii~l~~g-~i-~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1490)
T TIGR01271 597 SNKTRILVTSKLEHLKKADKILLLHEG-VC-YFYGTFSELQAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDG 674 (1490)
T ss_pred cCCeEEEEeCChHHHHhCCEEEEEECC-EE-EEEcCHHHHHhcChHHHHHHhcccccccccccccccccccccccccccc
Confidence 489999999999999999999999863 22 2211100000000000 00 00
Q ss_pred -c-----ccc-c----cchhh--H---------HH---------------------HHHHHHhh-------cc--ccc-C
Q 000711 675 -S-----SET-D----RQSDA--M---------AV---------------------EQAFVTAK-------KD--SAF-S 701 (1338)
Q Consensus 675 -~-----~~~-~----~~~~~--~---------~~---------------------~~~~~~~~-------~~--~~~-~ 701 (1338)
. .+. . ...+. . .. ........ .+ ... .
T Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (1490)
T TIGR01271 675 DSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEES 754 (1490)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhcccccccccccccccccccc
Confidence 0 000 0 00000 0 00 00000000 00 000 0
Q ss_pred Ccccch---------hhhH----HHhhC------------------C--C-----CCC-----C-CCCCC---cc-----
Q 000711 702 NPKAQS---------YVSE----VIAAS------------------P--I-----ADH-----N-VPLPV---FP----- 729 (1338)
Q Consensus 702 ~~~~~~---------~~~~----~~~~~------------------~--~-----~~~-----~-~~~~~---~~----- 729 (1338)
.+.... .... ..... . . ... . ...+. .+
T Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (1490)
T TIGR01271 755 LPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEE 834 (1490)
T ss_pred cccccccccccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 000000 0000 00000 0 0 000 0 00000 00
Q ss_pred --------ccccCcccchhhHHhHHHHhhccccchh------hHHHHHHHHHHHHHHHHHHHHHhhc----chHHH----
Q 000711 730 --------QLKSAPRILPLRVADMFKVLVPTVFDKQ------GAQLLAVAFLVVSRTWISDRIASLN----GTTVK---- 787 (1338)
Q Consensus 730 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~wl~~~~~~~~----~~~~~---- 787 (1338)
+..+..+...+ ..++.++....... ...++...+..+..+|++.|..... .....
T Consensus 835 ~~~~~~~~~e~~~~g~v~~---~vY~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~ 911 (1490)
T TIGR01271 835 DLKECFADERENVFETTTW---NTYLRYITTNRNLVFVLIFCLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSP 911 (1490)
T ss_pred hhhhhhhHHHHhhcCcccH---HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCc
Confidence 00000011111 12222222110000 0001111223356778877654210 00000
Q ss_pred ---H--HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-cchhhcccCCCCCCcc
Q 000711 788 ---Y--VLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDAD 861 (1338)
Q Consensus 788 ---~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~~~-~ff~~~~~~~~~~~~~ 861 (1338)
+ ........+. +.+++..+++..++.++..++......+...++|.++++++++.+ .||+..+ .+++.
T Consensus 912 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~----~G~il 985 (1490)
T TIGR01271 912 DVQKPVIITPTSAYYI--FYIYVGTADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMK----AGRIL 985 (1490)
T ss_pred cccccccccCcchhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCC----hhHHH
Confidence 0 0000011111 122222222222223333344455566677788888888888864 7887543 45689
Q ss_pred chhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhcCccccccHHHHHhccchH
Q 000711 862 QRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFR 941 (1338)
Q Consensus 862 ~Rls~D~~~l~~~l~~~~~~~i~~~~~i~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r 941 (1338)
+|+++|++.++..++..+..++..++.++.....+..+.+.. +++++++++..+++... +.+..++.++++...+
T Consensus 986 nRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l--~l~~~~l~~~~~~~~~~---~~~~~r~l~~~~~~~~ 1060 (1490)
T TIGR01271 986 NRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYI--FIAAIPVAVIFIMLRAY---FLRTSQQLKQLESEAR 1060 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence 999999999999888766555544333322211111111110 00111111111111111 1112233333332222
Q ss_pred ----HHHHHHHhhHHHhhhcCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhHHHHhhhhhHHHHHHH-HHHHHhh
Q 000711 942 ----FMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLL-LLKKKWLFGILDDFVTKQLPHNVTWGLS-LLYAMEH 1015 (1338)
Q Consensus 942 ----~~~~~~~~~~e~i~~~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 1015 (1338)
....+...+.++|++|+.+....+.+.+..+........ ....+|+..... ++...+ ..++. +.++...
T Consensus 1061 s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~-~i~~~~----~~~~~~l~~~~~~ 1135 (1490)
T TIGR01271 1061 SPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRID-IIFVFF----FIAVTFIAIGTNQ 1135 (1490)
T ss_pred hHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH----HHHHHHHHHHHhc
Confidence 222333456789999998766655554444433322222 223344432222 211111 01111 1111110
Q ss_pred cccchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHhhcCCCCCC------------c
Q 000711 1016 KGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDE------------I 1083 (1338)
Q Consensus 1016 ~~~~~~~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ri~~~~~~~~~~~~~~~~------------~ 1083 (1338)
...|.++.++.+.. .+..++..+......+.....+++||.++.+.+++.+..... .
T Consensus 1136 -------~~~g~~g~~l~~~~----~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 1204 (1490)
T TIGR01271 1136 -------DGEGEVGIILTLAM----NILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIE 1204 (1490)
T ss_pred -------CCccHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccc
Confidence 12233443333322 223344555556666777778999999998765443211100 0
Q ss_pred cCCccCCCCCCCCCCceEEeeeEEeCCC-ccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCC
Q 000711 1084 SGSSQHKWNSTDYQDSISFSKLDIITPS-QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQ 1162 (1338)
Q Consensus 1084 ~~~~~~~wp~~~~~g~I~f~nV~f~yp~-~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~ 1162 (1338)
...+++.||. .|.|+|+||+|+|++ .++||+|+||+|+||||||||||||||||||+++|+|+|+ .+|+|.|||+
T Consensus 1205 ~~~~~~~wp~---~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~ 1280 (1490)
T TIGR01271 1205 NPHAQKCWPS---GGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGV 1280 (1490)
T ss_pred cCCCCCCCCC---CCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCE
Confidence 1123456887 689999999998875 6889999999999999999999999999999999999998 7999999999
Q ss_pred CCccc--cCCcccEEEEcCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhh
Q 000711 1163 HIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLE 1240 (1338)
Q Consensus 1163 dI~~~--~~lr~~i~~VpQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~ 1240 (1338)
||+++ +.+|++|++|||||+||+||||+||+ |.. +..|++++++++.++|+++++
T Consensus 1281 di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLd-p~~----------------------~~tdeei~~aL~~~~L~~~i~ 1337 (1490)
T TIGR01271 1281 SWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLD-PYE----------------------QWSDEEIWKVAEEVGLKSVIE 1337 (1490)
T ss_pred EcccCCHHHHHhceEEEeCCCccCccCHHHHhC-ccc----------------------CCCHHHHHHHHHHCCCHHHHH
Confidence 99988 46788999999999999999999996 432 124777889999999999999
Q ss_pred hhcccCcccC-cccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCccc
Q 000711 1241 REEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPF 1317 (1338)
Q Consensus 1241 ~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i~~ 1317 (1338)
.+|+||||.+ +.|.+|||||||||||||||||+|||||||||||+||.++|+.|++.+++ .++|||+||||++++..
T Consensus 1338 ~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~ 1417 (1490)
T TIGR01271 1338 QFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE 1417 (1490)
T ss_pred hCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh
Confidence 9999999998 47889999999999999999999999999999999999999999998864 59999999999999999
Q ss_pred ccceEEEecCC
Q 000711 1318 HSLELRLIDGE 1328 (1338)
Q Consensus 1318 ~d~~l~l~~g~ 1328 (1338)
+|++++|++|+
T Consensus 1418 ~DrIlvL~~G~ 1428 (1490)
T TIGR01271 1418 CQQFLVIEGSS 1428 (1490)
T ss_pred CCEEEEEECCE
Confidence 99999997763
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-88 Score=772.42 Aligned_cols=629 Identities=38% Similarity=0.615 Sum_probs=545.1
Q ss_pred HHhhhhhhhcccchhhhhhccccCCCCcccccCCCCCCCcccccc-cccccccccccccccChHHHHHHHHHHhcccCch
Q 000711 24 ILLASGILVAGGTAAYLKSRFSSKKPDAFGHYNGLGDSERKPDKA-VANRSNIKKANQKKGGLKSLQVLAAILLSEMGKM 102 (1338)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~p~~~~~ 102 (1338)
+++++++..+|++++|+..+..+..++++. ++.....++..+. ...+..+.|.+..+..++++.+++++++|...++
T Consensus 2 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~t~~~~~~~~~~~~~k~~~~~~f~~k~~~ilkil~p~~~~~ 79 (659)
T KOG0060|consen 2 LAITAKVCAPGLVLRHASFLLAKLYIGSFR--GNPRFRSETCMSLAGKKQGAKAKASLDKVFFQKFLQILKILFPSTFSS 79 (659)
T ss_pred CcccccccCchhHHHHHHHHHHHhhhhhcc--CCCcccccchhhccCCCCCccchhhhhHHHHHHHHHHHHHhccCcccc
Confidence 467889999999999999999999999996 4444433433332 2333333455555666788999999999998877
Q ss_pred hHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 103 GARD-LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTK 181 (1338)
Q Consensus 103 ~~~~-l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~R~~lt~ 181 (1338)
++.+ +++++++++..+..++.++.+.+.||.++++++.+.|.+.+..+++.+.+.+.+++..+|..+.+.++||+++|+
T Consensus 80 ~~~~l~l~~~~l~~~~~~~~y~~~~~~~~~y~al~~kd~~~F~~~~~~~~~~~~~~s~~~a~~ky~~~~L~Lr~R~~ltk 159 (659)
T KOG0060|consen 80 QTALLLLALVALTLLTTADVYMIGNIPTKFYVALINKDAELFKRLLFKYVLLIPGISLLNALLKFTTNELYLRFRKNLTK 159 (659)
T ss_pred HHHHHHHHHHHHHHHHHhHhheecccchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHH
Confidence 7544 455667778888889999999999999999999999999998888888888899999999999999999999999
Q ss_pred HHHHHHhcccccccccccCCCCCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHH
Q 000711 182 LIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGA 261 (1338)
Q Consensus 182 ~l~~~~~~~~~~~~~~~~d~~~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~l~~~~~~ 261 (1338)
.+++.||++..||+++..|.+++|||||+++|+++||..+++++++++.+++++++|+|.++...+|..+++++.|++++
T Consensus 160 ~lh~~Y~k~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~ 239 (659)
T KOG0060|consen 160 YLHRLYFKGFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIG 239 (659)
T ss_pred HHHHHHhccceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999989
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 262 GTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFL 341 (1338)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (1338)
+++...+.+|+.+++.+||+.|||||+.|+++|.|+|.||||+|++.|..+.+++|+++.++.+..+.+.++++++++++
T Consensus 240 ~vi~~~L~~pI~~l~~~qeklEGdfRy~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~ 319 (659)
T KOG0060|consen 240 TVINKTLRGPIVKLTVEQEKLEGDFRYKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIF 319 (659)
T ss_pred HHHHhhhccchhHHHHHHHHhhcchhhheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHhHhcccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000711 342 LKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISR 421 (1338)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~ri~~~~~~~~ 421 (1338)
. |++.+++++++..|+|.|+.. +..+ ...+...+.....+++.++++++.+....+.+.++.++++||.|+++...
T Consensus 320 ~-Ylg~ilsy~vi~~p~Fs~h~y-~~~s--~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~ 395 (659)
T KOG0060|consen 320 D-YLGGILSYVVIAIPFFSGHVY-DDLS--PAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLD 395 (659)
T ss_pred H-HHHhhheeeEEeeeeeccccc-CCcC--HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Confidence 6 999999999999999988743 3222 23445555566677888889999999999999999999999999987655
Q ss_pred hccccC-----------CC----CCCCCCCCCcCCCCcEEEEeEEEEcCC-CCeeeeeeeEEEeCCCEEEEEcCCCCcHH
Q 000711 422 ELSIED-----------KS----PQRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKS 485 (1338)
Q Consensus 422 ~~~~~~-----------~~----~~~~~~~~~~~~~~~i~~~~v~~~~~~-~~~~l~~~sl~i~~G~~~~i~G~sGsGKS 485 (1338)
+..... +. ...++.....+.++.|+|++|++..|+ +..+++|+||+|+.|+.++|+||||||||
T Consensus 396 d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKt 475 (659)
T KOG0060|consen 396 DLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKT 475 (659)
T ss_pred HhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchh
Confidence 433111 00 001111222334578999999999998 77888999999999999999999999999
Q ss_pred HHHHHHcCCCCCCccEEEeCCCCccccccEEEEecCCCCCCCCHHHHhcCCCCCCc-ccCCCCHHHHHHHHHHcCCchHH
Q 000711 486 SLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQ-EVEPLTHGGMVELLKNVDLEYLL 564 (1338)
Q Consensus 486 TLl~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~ 564 (1338)
+|+|+++|+||..+|++..+.... .+.+.||||+||+..||+||++.||..... ..+..+|+++.+.|+.++|.+++
T Consensus 476 SLlRvlggLWp~~~G~l~k~~~~~--~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~ 553 (659)
T KOG0060|consen 476 SLLRVLGGLWPSTGGKLTKPTDGG--PKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLL 553 (659)
T ss_pred HHHHHHhcccccCCCeEEecccCC--CCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHH
Confidence 999999999999999999876421 246999999999999999999999965432 23457899999999999999999
Q ss_pred hcCCC-C--ccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHccCCeEEEEecChhhHhhc
Q 000711 565 DRYPP-E--KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFH 641 (1338)
Q Consensus 565 ~~~~~-~--~~~~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~t~i~itH~~~~~~~~ 641 (1338)
++... + .+.+|.+.||+|||||+|+||.+|++|++.||||+|||+|.+.|..+++.+++.|+|.|.|+||.++.++|
T Consensus 554 ~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~kfH 633 (659)
T KOG0060|consen 554 EREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWKFH 633 (659)
T ss_pred HHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHhhh
Confidence 99743 4 33479999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEccCCCceEEeecCC
Q 000711 642 DVVLSLDGEGEWRVHDKRD 660 (1338)
Q Consensus 642 d~i~~l~~~g~~~~~~~~~ 660 (1338)
|.++.|+++|+|.++...+
T Consensus 634 d~~L~~~g~g~w~~~~I~~ 652 (659)
T KOG0060|consen 634 DYVLRMDGRGSWRFHQIDD 652 (659)
T ss_pred hEEEEecCCCceEEEEech
Confidence 9999999999999986654
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-77 Score=707.52 Aligned_cols=543 Identities=28% Similarity=0.479 Sum_probs=466.4
Q ss_pred HHHHHHHHhcccCch----hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHH
Q 000711 88 LQVLAAILLSEMGKM----GARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHST 163 (1338)
Q Consensus 88 l~~l~~~~~p~~~~~----~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (1338)
+++++.+.+|+|.++ ...++++++++.++.+..++.++.|++.||++|..+|...|++.+..|.+++++...+.+.
T Consensus 26 ~~qfw~i~r~yw~~~~~~~~~~l~~~i~~~~l~~v~~~v~~~~w~~~~~~aL~~~d~~~f~~~l~~f~~ia~~~v~~~v~ 105 (604)
T COG4178 26 GRQFWMIARAYWASPVRKRAWLLLIGILALILLSVRGQVLLNDWNGPFYNALARRDLAAFWQQLQVFAIIAGLLVLLNVA 105 (604)
T ss_pred HHHHHHHhhhhccCccchHHHHHHHHHHHHHHHHhheeeeeHhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666665532 2344455666778888889999999999999999999999999988888877777778899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccC--CCCCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000711 164 SKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVD--GRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWR 241 (1338)
Q Consensus 164 ~~~l~~~l~~~~R~~lt~~l~~~~~~~~~~~~~~~~d--~~~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~ 241 (1338)
..|+++++.++||+|||+++.++||++..||++.+.+ ..+|||||||++|+..|++...++..+++.++++.+.|+..
T Consensus 106 ~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~i 185 (604)
T COG4178 106 QTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGI 185 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987 45799999999999999999999999999999999998877
Q ss_pred HHH-------------hchhhHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChH
Q 000711 242 LCS-------------YASPKYVFWI-LAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGEN 307 (1338)
Q Consensus 242 l~~-------------~~~~~l~~~~-l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~ 307 (1338)
||. +.+|++++|+ ++|++.++++++++||++.+++.+++++||+||+.+.++++|+|+|++|+||+
T Consensus 186 Lw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~ 265 (604)
T COG4178 186 LWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEK 265 (604)
T ss_pred HHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcH
Confidence 761 4578888886 56888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccccCCcchhhHHHHHHHHHHHHHHHH
Q 000711 308 KEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVII 387 (1338)
Q Consensus 308 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 387 (1338)
.|+++++++|..+.+++++...+...+..++..+. ++...+++++.+|.||.|.+ ++|..+. ..+.+.
T Consensus 266 ~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~-~~s~v~P~li~ap~~f~g~i-----~~G~lmq------a~~aF~ 333 (604)
T COG4178 266 VERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYG-WLSVVLPILIAAPRYFSGQI-----TFGGLMQ------AVGAFG 333 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhh-HHHHHHHHHhccHhhhcCcC-----hHHHHHH------HHHHHH
Confidence 99999999999999999999988888888888775 44557777777888998887 5665433 234566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCcCC--CCcEEEEeEEEEcCCCCeeeeeee
Q 000711 388 SLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSE--ANYIEFSGVKVVTPTGNVLVENLT 465 (1338)
Q Consensus 388 ~~~~~l~~l~~~~~~l~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~v~~~~~~~~~~l~~~s 465 (1338)
.+..+++++...+.++..+.+...|+.++.+..+....+..............+ ...|+++|+++..|+++++++++|
T Consensus 334 ~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~~~ll~~l~ 413 (604)
T COG4178 334 QVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLSELN 413 (604)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCCCeeeccce
Confidence 777889999999999999999999999987654422111111111000001111 467999999999999999999999
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCC
Q 000711 466 LKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEP 545 (1338)
Q Consensus 466 l~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~ 545 (1338)
|++++||.+.|.||||||||||+|+|+|+||..+|+|.+|. ...+.|+||+||++.||+||.|+||.... .
T Consensus 414 ~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----~~~~lflpQ~PY~p~GtLre~l~YP~~~~----~ 484 (604)
T COG4178 414 FEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----DSALLFLPQRPYLPQGTLREALCYPNAAP----D 484 (604)
T ss_pred eeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----CCceEEecCCCCCCCccHHHHHhCCCCCC----C
Confidence 99999999999999999999999999999999999999984 24699999999999999999999997642 3
Q ss_pred CCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--
Q 000711 546 LTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA-- 623 (1338)
Q Consensus 546 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~-- 623 (1338)
.+|+++.++|.+|+|+++.+++ +.+.+|...||+|||||||+||.++++|++++|||+|||||+++|..+++.+++
T Consensus 485 ~~d~~l~~vL~~vgL~~L~~rl--~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l 562 (604)
T COG4178 485 FSDAELVAVLHKVGLGDLAERL--DEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL 562 (604)
T ss_pred CChHHHHHHHHHcCcHHHHHHH--hccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC
Confidence 7899999999999999999994 555679999999999999999999999999999999999999999999999998
Q ss_pred cCCeEEEEecChhhHhhcceEEEccCCCce
Q 000711 624 MGTSCITISHRPALVAFHDVVLSLDGEGEW 653 (1338)
Q Consensus 624 ~~~t~i~itH~~~~~~~~d~i~~l~~~g~~ 653 (1338)
.+.|+|.|+||..+..+|++.+.+++.+++
T Consensus 563 p~~tvISV~Hr~tl~~~h~~~l~l~~~~~~ 592 (604)
T COG4178 563 PDATVISVGHRPTLWNFHSRQLELLDDAGG 592 (604)
T ss_pred CCCEEEEeccchhhHHHHhhheeecccccc
Confidence 699999999999999999999999876655
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-75 Score=688.30 Aligned_cols=469 Identities=20% Similarity=0.252 Sum_probs=344.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhcccCCCCCCccchhHHHHHHHHHHHHHHHH
Q 000711 801 IGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVT 880 (1338)
Q Consensus 801 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~~~~ff~~~~~~~~~~~~~~Rls~D~~~l~~~l~~~~~ 880 (1338)
.+++++.+++.++..+++.+...++..+.|..+++++++ ++..|||.. +.+|+.+|++.|...+...+...+.
T Consensus 195 ~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~---QdiaFFD~n----ktGeL~SRLtsD~~~vs~svs~nls 267 (716)
T KOG0058|consen 195 LGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRSLLR---QDIAFFDEN----KTGELISRLTSDTQIVSNSVSQNLS 267 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhhhccC----CccHHHhhhhhhHHHHHHHHHHHHH
Confidence 344555555666666677777777776666666655444 246899853 4688999999999988777766555
Q ss_pred HhhHh-------HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhcCccccccHHHHHhccchHHHHHHHHhhHHH
Q 000711 881 GMVKP-------SVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAES 953 (1338)
Q Consensus 881 ~~i~~-------~~~i~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~~~~~~e~ 953 (1338)
..+.+ +..+++.+|+|++++. +.++++.+ ....+++.+.+++.+.|+.-+......++...+.++
T Consensus 268 ~~lR~~~~~~g~~~~M~~~S~~Ltlv~~-----i~~P~v~~---~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rT 339 (716)
T KOG0058|consen 268 DGLRNLVQGFGGLGFMFSLSWRLTLVTL-----IVVPIVAL---VAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRT 339 (716)
T ss_pred HHHHHHHHHHHhHHHHhhhhHHHHHHHH-----HHhcHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 44433 2344678999987652 11111111 122233335556666677666666666677778899
Q ss_pred hhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhhhHHHHHHHHHHHHhhcccchhhhchHHHHHHHH
Q 000711 954 VAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALR 1033 (1338)
Q Consensus 954 i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~ 1033 (1338)
|+.|+.|..|..++.+..++.++-.++.......+.....+. ........++|+..+..... .+.|.+..++.
T Consensus 340 VRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~-----~~~~~~siL~~Gg~Lv~~g~--mt~g~L~sFll 412 (716)
T KOG0058|consen 340 VRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLL-----GNLAVLSILFYGGHLVLTGS--LTSGALSSFLL 412 (716)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHH-----HhHHHHHHHHhccchhhcCc--cchhHHHHHHH
Confidence 999999999988877777666665443332222111111111 11222334555543322221 24666655554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHhhcCCCCCCccCCccCCCCCCCCCCceEEeeeEEeCCCcc
Q 000711 1034 FLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQK 1113 (1338)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ri~~~~~~~~~~~~~~~~~~~~~~~~wp~~~~~g~I~f~nV~f~yp~~~ 1113 (1338)
|.. +...++..+...+..+.+..+|.+|++|++++.+..+.. +..-|. ..+|.|+|+||+|.||+.|
T Consensus 413 Y~~----~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~--------G~~~p~-~~~G~IeF~~VsFaYP~Rp 479 (716)
T KOG0058|consen 413 YQV----QLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT--------GTLAPD-HLQGVIEFEDVSFAYPTRP 479 (716)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC--------Cccccc-cccceEEEEEeeeecCCCC
Confidence 432 334466677777888888889999999999875443221 111132 3579999999999999854
Q ss_pred --ccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEEEEcCCCCCCCCCHH
Q 000711 1114 --LLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLR 1189 (1338)
Q Consensus 1114 --~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~~VpQdP~LF~GTIR 1189 (1338)
+||+|+||+|+|||+||+||||||||||++++|+|||||++|+|++||+||+++ .++|++|++|.|||+||+|||+
T Consensus 480 ~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~ 559 (716)
T KOG0058|consen 480 DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIR 559 (716)
T ss_pred CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHH
Confidence 699999999999999999999999999999999999999999999999999999 4778899999999999999999
Q ss_pred HHhcCCC--chHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC-cccCCCChhHHHHHHH
Q 000711 1190 DQIIYPL--SREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGM 1266 (1338)
Q Consensus 1190 eNL~~p~--~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlai 1266 (1338)
|||.|+. .++|++..|+++|++|+||. ..|+||||.+ ++|.+|||||||||||
T Consensus 560 eNI~YG~~~~t~e~i~~AAk~ANah~FI~------------------------~~p~gY~T~VGEkG~qLSGGQKQRIAI 615 (716)
T KOG0058|consen 560 ENIAYGLDNATDEEIEAAAKMANAHEFIT------------------------NFPDGYNTVVGEKGSQLSGGQKQRIAI 615 (716)
T ss_pred HHHhcCCCCCCHHHHHHHHHHhChHHHHH------------------------hCccccccccCCccccccchHHHHHHH
Confidence 9999965 35777788999988766543 3467999998 5899999999999999
Q ss_pred HHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1267 ARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1267 ARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
||||+|||+||||||||||||+++|..+|+.+.. .++|||+|||||+||+-+|++.++++|.
T Consensus 616 ARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~ 679 (716)
T KOG0058|consen 616 ARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGR 679 (716)
T ss_pred HHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCe
Confidence 9999999999999999999999999999998753 5899999999999999999999997653
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-74 Score=645.12 Aligned_cols=573 Identities=34% Similarity=0.580 Sum_probs=488.9
Q ss_pred ccccChHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHH
Q 000711 80 QKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLST 159 (1338)
Q Consensus 80 ~~~~~~~~l~~l~~~~~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 159 (1338)
.++-.++++..|+++++|...|+++.++.+..++++.+|++|++++.+.|.++..++.++...|...++.|+++++++++
T Consensus 93 ~N~~f~k~l~~L~Kilip~vfc~e~gll~~hs~~Li~RTfLSl~VA~LdGqlVk~Ivrk~~r~F~~~LlkW~liaiPAtF 172 (728)
T KOG0064|consen 93 KNSQFLKRLNVLSKILIPTVFCKETGLLTAQSFFLISRTFLSLFVAKLDGQLVKNIVRKRGRQFLWDLLKWFLIAIPASF 172 (728)
T ss_pred cCHHHHHHHHHHHHHhcchHHHHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHhhhccHHH
Confidence 33344677889999999999999999899999999999999999999999999999999999998888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000711 160 MHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYT 239 (1338)
Q Consensus 160 ~~~~~~~l~~~l~~~~R~~lt~~l~~~~~~~~~~~~~~~~d~~~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~ 239 (1338)
+++..+|++..+++.+|.+++++..+.||++.+||++++.|+++.|+||++|+||..|++.++.+++++.+++++.++++
T Consensus 173 vNS~Iryle~klaLafrtrL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s 252 (728)
T KOG0064|consen 173 VNSAIRYLESKLALAFRTRLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLILIS 252 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHhc-hhh--HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH
Q 000711 240 WRLCSYA-SPK--YVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQK 316 (1338)
Q Consensus 240 ~~l~~~~-~~~--l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~ 316 (1338)
+.|+... +.+ -...+...+.+.+.+++.++|+++++..++..+++.+|+.|+++.+|.|.||||+|.+.|.+++++.
T Consensus 253 ~~L~~s~~s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~s 332 (728)
T KOG0064|consen 253 FTLLDSATSVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDES 332 (728)
T ss_pred HHHHhhhccccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHH
Confidence 7775321 111 1111222222455678889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccccCCc----chhhHHHHHHHHHHHHHHHHHHHHH
Q 000711 317 FKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDT----STLGRAKMLSNLRYHTSVIISLFQS 392 (1338)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~ 392 (1338)
|+.+...+..+.+...|+.+...|+.+|.+...+++++..|++.+....+. ...+.. ....+...-..+.+...+
T Consensus 333 y~~L~~qm~li~k~r~~YiMleqF~mKYvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~s-rt~~f~t~r~LL~saAdA 411 (728)
T KOG0064|consen 333 YNRLVEQMNLIFKVRLWYIMLEQFVMKYTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNS-RTKEFITNRRLLLSAADA 411 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeeeecccCCCCcccccccchh-HHHHHHHHHHHHHHHHHH
Confidence 999999998899999999999999999999999998888887655442211 111111 111122234567778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccC--C-CC-CC----------CCC----CCCcCCCCcEEEEeEEEEc
Q 000711 393 LGTLSISSRRLNRLSGYADRIHELMVISRELSIED--K-SP-QR----------NGS----RNYFSEANYIEFSGVKVVT 454 (1338)
Q Consensus 393 l~~l~~~~~~l~~~~~~~~ri~~~~~~~~~~~~~~--~-~~-~~----------~~~----~~~~~~~~~i~~~~v~~~~ 454 (1338)
+..++.+++.++++.++..|++++++..++..... . .. +. +.. .........|.++||.+..
T Consensus 412 ieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvIt 491 (728)
T KOG0064|consen 412 IERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVIT 491 (728)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCceec
Confidence 99999999999999999999998776544432110 0 00 00 000 0001123469999999999
Q ss_pred CCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCccccccEEEEecCCCCCCCCHHHHhc
Q 000711 455 PTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLI 534 (1338)
Q Consensus 455 ~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q~~~l~~~tl~eni~ 534 (1338)
|.++.++..+||+|++|-.++|+||||||||+|+|+|.|+||...|...+|.. .+|.|+||+||+--||+||+|.
T Consensus 492 P~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~-----~~mFYIPQRPYms~gtlRDQII 566 (728)
T KOG0064|consen 492 PAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRP-----NNIFYIPQRPYMSGGTLRDQII 566 (728)
T ss_pred cCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCC-----cceEeccCCCccCcCcccceee
Confidence 99999999999999999999999999999999999999999999999999863 4699999999999999999999
Q ss_pred CCCCCCcc-cCCCCHHHHHHHHHHcCCchHHhcCC-CCccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHH
Q 000711 535 YPLTSDQE-VEPLTHGGMVELLKNVDLEYLLDRYP-PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTD 612 (1338)
Q Consensus 535 ~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~ 612 (1338)
||...++. ....+|.++..+|+.+.|++.+++-. .+...+|-+.||||||||+++||.+||+|++.+|||||||+.++
T Consensus 567 YPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsid 646 (728)
T KOG0064|consen 567 YPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSID 646 (728)
T ss_pred cCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccc
Confidence 99875433 23578999999999999999998854 35556899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCeEEEEecChhhHhhcceEEEccCCCceEEeec
Q 000711 613 MEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDK 658 (1338)
Q Consensus 613 ~~~~i~~~l~~~~~t~i~itH~~~~~~~~d~i~~l~~~g~~~~~~~ 658 (1338)
.|..+++..+..|.+.|.||||++++++|.+.+..+++|+|..+.-
T Consensus 647 vE~~i~~~ak~~gi~llsithrpslwk~h~~ll~~dg~g~~q~~~l 692 (728)
T KOG0064|consen 647 VEGKIFQAAKDAGISLLSITHRPSLWKYHTHLLEFDGEGGWQFRAL 692 (728)
T ss_pred hHHHHHHHHHhcCceEEEeecCccHHHHHHHHHhccCCCCeeeccC
Confidence 9999999999999999999999999999999999999999988643
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-73 Score=668.71 Aligned_cols=538 Identities=21% Similarity=0.260 Sum_probs=427.8
Q ss_pred cccccccChHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh-cCh-hHHHHHHHHHHHHH
Q 000711 77 KANQKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFL-RRV-PLFFQLISENILLC 154 (1338)
Q Consensus 77 ~~~~~~~~~~~l~~l~~~~~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~-~~~~~~~~~~~~~~ 154 (1338)
+....|.....++||+.++.|.|+ + +.+.++++++.+..+..+|.+.|.++|.+.. .+. ..|.+......++.
T Consensus 124 ~~~~~~~~~~~~~rl~~l~~~~~~----~-l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~ 198 (716)
T KOG0058|consen 124 KAAGQKPNHTLLKRLLGLLKPEWK----W-LVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLF 198 (716)
T ss_pred CCCCcccchhHHHHHHHHhchhHH----H-HHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 333444444578899999999887 3 6777778888888899999999999999887 332 22333322233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCC-CCCchhHHHccHHHHHHHHHHHHHHhHHHHH
Q 000711 155 FLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVT 233 (1338)
Q Consensus 155 ~~~~~~~~~~~~l~~~l~~~~R~~lt~~l~~~~~~~~~~~~~~~~d~~-~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~ 233 (1338)
++.++++.+..|+.+..+.+ +..++|...|+++.+++++|||.+ ++++.+|++.|...+.+.+...+...+.+.+
T Consensus 199 ~~~a~~~~~r~~~~~~a~~r----v~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~ 274 (716)
T KOG0058|consen 199 LIGALANAIRGGLLQYAGER----VVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLV 274 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555666666666 999999999999999999999965 8899999999999999999888888888777
Q ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHH
Q 000711 234 DGLLYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHI 313 (1338)
Q Consensus 234 ~~~~~~~~l~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~ 313 (1338)
.++. ...+|++.+|.++++.++.+|+.+.+...+|+.++++..+.|+.-|+..+..++...++++|+.|++|+.|.+++
T Consensus 275 ~~~g-~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry 353 (716)
T KOG0058|consen 275 QGFG-GLGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRY 353 (716)
T ss_pred HHHH-hHHHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHH
Confidence 6543 345677889999999999999888888999999999999999999999999899889999999999999999655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccccCC-cchhhHHHHHHHHHHHHHHHHHHHHH
Q 000711 314 QQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPD-TSTLGRAKMLSNLRYHTSVIISLFQS 392 (1338)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~ 392 (1338)
.++.++..+-.++. ....++++..........+. ...+++|.+..+ ..+.| .+.+++.| -..+-.+
T Consensus 354 ~~~l~~~~~i~~k~---a~a~~~f~~~~~~~~~~~~~----siL~~Gg~Lv~~g~mt~g--~L~sFllY----~~~~g~s 420 (716)
T KOG0058|consen 354 NKKLREVLKLSKKE---AVAYGIFFGSTNLLGNLAVL----SILFYGGHLVLTGSLTSG--ALSSFLLY----QVQLGSS 420 (716)
T ss_pred HHHHHHHHHHHHHH---HHHhhHhHhHHHHHHhHHHH----HHHHhccchhhcCccchh--HHHHHHHH----HHHHHHH
Confidence 55554444322221 11112221111111111111 122466666433 34554 34554444 3344567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCcCCCCcEEEEeEEEEcCCC--CeeeeeeeEEEeC
Q 000711 393 LGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG--NVLVENLTLKVEP 470 (1338)
Q Consensus 393 l~~l~~~~~~l~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~--~~~l~~~sl~i~~ 470 (1338)
+..++..+..+.+..++.+|++|++|.+|.++..+...+ ..-.+.|+|+||+|.||.. .++|+|+||+|+|
T Consensus 421 l~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G~~~p-------~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~p 493 (716)
T KOG0058|consen 421 LSGLSSFYSELMKGVGASERVFELMDRKPRIPLTGTLAP-------DHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRP 493 (716)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCCcccc-------ccccceEEEEEeeeecCCCCCchhhcCceeeeCC
Confidence 888999999999999999999999998887653211110 0236789999999999974 5799999999999
Q ss_pred CCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC------ccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccC
Q 000711 471 GSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE 544 (1338)
Q Consensus 471 G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~ 544 (1338)
||.+|+|||||+||||+.++|.++|+|++|+|.+||++ ..+|++||+|.|+|.+|++||+|||.||.+
T Consensus 494 Ge~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~------ 567 (716)
T KOG0058|consen 494 GEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD------ 567 (716)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCC------
Confidence 99999999999999999999999999999999999987 347899999999999999999999999975
Q ss_pred CCCHHHHHHHHHHcCCchHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 000711 545 PLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV 621 (1338)
Q Consensus 545 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l 621 (1338)
..+++++..+.+.++.++|+..+|+++++ +.|.+|||||||||||||||++||+||||||+|||||.++|..+.+.+
T Consensus 568 ~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL 647 (716)
T KOG0058|consen 568 NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEAL 647 (716)
T ss_pred CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHH
Confidence 36899999999999999999999998776 468899999999999999999999999999999999999999999999
Q ss_pred Hc--cCCeEEEEecChhhHhhcceEEEccCC
Q 000711 622 RA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 622 ~~--~~~t~i~itH~~~~~~~~d~i~~l~~~ 650 (1338)
.+ .++|||+|+||+++++.||+|++++++
T Consensus 648 ~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G 678 (716)
T KOG0058|consen 648 DRLMQGRTVLVIAHRLSTVRHADQIVVIDKG 678 (716)
T ss_pred HHhhcCCeEEEEehhhhHhhhccEEEEEcCC
Confidence 75 489999999999999999999999874
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-70 Score=687.94 Aligned_cols=562 Identities=34% Similarity=0.606 Sum_probs=466.0
Q ss_pred hHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 85 LKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTS 164 (1338)
Q Consensus 85 ~~~l~~l~~~~~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (1338)
++++.+++++++|+++++++..+++.++++++++++++.+|.+.+.++|.+++++...|...++.+++++++.++++++.
T Consensus 76 ~~~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~ 155 (659)
T TIGR00954 76 LGKLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAI 155 (659)
T ss_pred HHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688899999999999998888889999999999999999999999999998888778776666666666777888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000711 165 KYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCS 244 (1338)
Q Consensus 165 ~~l~~~l~~~~R~~lt~~l~~~~~~~~~~~~~~~~d~~~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~ 244 (1338)
+|+.+++..+||++++++++++|+++..+|++.++|++.+|++||+++|++.+++.+...+..++.++++.+.+++.++.
T Consensus 156 ~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~ 235 (659)
T TIGR00954 156 KYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDSRIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLT 235 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988899999999999999999999999999999998888777776
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 000711 245 YASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324 (1338)
Q Consensus 245 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~ 324 (1338)
..+|.+++++++++++..++..+++|++.+++.++++.+++++..+.+..+|+|+||+|++|+.|.+++++.++++.++.
T Consensus 236 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~ 315 (659)
T TIGR00954 236 ALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHL 315 (659)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 68899988888898888888899999999999999999999999999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccc-ccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 325 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGN-LKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRL 403 (1338)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l 403 (1338)
.+..+....+..+..++..+....++++++..+++... ...+..+.|.. ++.+.....++..++.++..++..+..+
T Consensus 316 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~--~~~f~~~~~~~~~l~~~~~~l~~~~~~i 393 (659)
T TIGR00954 316 NLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEEL--MQEFYNNGRLLLKAADALGRLMLAGRDM 393 (659)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766666666666555444333333333333333211 11122345432 2212222344566778999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhccccC--CC-CCC-CC-------------CCCCcCCCCcEEEEeEEEEcCCCCeeeeeeeE
Q 000711 404 NRLSGYADRIHELMVISRELSIED--KS-PQR-NG-------------SRNYFSEANYIEFSGVKVVTPTGNVLVENLTL 466 (1338)
Q Consensus 404 ~~~~~~~~ri~~~~~~~~~~~~~~--~~-~~~-~~-------------~~~~~~~~~~i~~~~v~~~~~~~~~~l~~~sl 466 (1338)
+++.++++|+.++++.+++.+... .. ... .. ........+.++++||++.||+++++++|+||
T Consensus 394 ~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~~~il~~isl 473 (659)
T TIGR00954 394 TRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNGDVLIESLSF 473 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCCCeeeecceE
Confidence 999999999999998765532110 00 000 00 00011123579999999999877789999999
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCccccccEEEEecCCCCCCCCHHHHhcCCCCCCcc-cCC
Q 000711 467 KVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEP 545 (1338)
Q Consensus 467 ~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~-~~~ 545 (1338)
++++||+++|+||||||||||+++|+|+|+|++|+|.+++ +++++||||+|+++++|++|||.++...... ...
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 548 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRG 548 (659)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccC
Confidence 9999999999999999999999999999999999999875 4579999999999999999999997532111 112
Q ss_pred CCHHHHHHHHHHcCCchHHhcCCC--CccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc
Q 000711 546 LTHGGMVELLKNVDLEYLLDRYPP--EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA 623 (1338)
Q Consensus 546 ~~~~~~~~~l~~~~l~~~~~~~~~--~~~~~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~ 623 (1338)
.+++++.++++.+++++++++ |. ++..+|+.+||||||||++||||++++|+++|||||||+||+++++.+++.+++
T Consensus 549 ~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~ 627 (659)
T TIGR00954 549 LSDKDLEQILDNVQLTHILER-EGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE 627 (659)
T ss_pred CCHHHHHHHHHHcCCHHHHhh-cCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 457788999999999999887 44 344468889999999999999999999999999999999999999999999998
Q ss_pred cCCeEEEEecChhhHhhcceEEEccCCCceE
Q 000711 624 MGTSCITISHRPALVAFHDVVLSLDGEGEWR 654 (1338)
Q Consensus 624 ~~~t~i~itH~~~~~~~~d~i~~l~~~g~~~ 654 (1338)
.|+|+|+||||++++++||++++++++|+|.
T Consensus 628 ~~~tvI~isH~~~~~~~~d~il~l~~~g~~~ 658 (659)
T TIGR00954 628 FGITLFSVSHRKSLWKYHEYLLYMDGRGGYQ 658 (659)
T ss_pred cCCEEEEEeCchHHHHhCCEEEEEeCCCCcc
Confidence 8999999999999999999999999988885
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-69 Score=616.08 Aligned_cols=569 Identities=36% Similarity=0.611 Sum_probs=465.1
Q ss_pred hhhHHhHHHHhhccccchhhHHHHHHHHH-HHHHHHHHHHHHhhcchHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 739 PLRVADMFKVLVPTVFDKQGAQLLAVAFL-VVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPS 817 (1338)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 817 (1338)
..++..++++++|..+.++.++++.+.+. ....+...+.+....+....+...++...|..++..++++..+.......
T Consensus 62 ~~k~~~ilkil~p~~~~~~~~~l~l~~~~l~~~~~~~~y~~~~~~~~~y~al~~kd~~~F~~~~~~~~~~~~~~s~~~a~ 141 (659)
T KOG0060|consen 62 FQKFLQILKILFPSTFSSQTALLLLALVALTLLTTADVYMIGNIPTKFYVALINKDAELFKRLLFKYVLLIPGISLLNAL 141 (659)
T ss_pred HHHHHHHHHHhccCccccHHHHHHHHHHHHHHHHHhHhheecccchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778888998887777766554333 33333334444444455555666778888887777777666666666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccchhhcccCCCCCCccchhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Q 000711 818 IRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMK 897 (1338)
Q Consensus 818 ~~~~~~~~~~~~r~~l~~~l~~~~l~~~~ff~~~~~~~~~~~~~~Rls~D~~~l~~~l~~~~~~~i~~~~~i~~~~~~l~ 897 (1338)
..+....+.++||.++++++++.|++...||++.+.+...+|||||+++|++.++..+..+...++.+.++++++.|+++
T Consensus 142 ~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~ 221 (659)
T KOG0060|consen 142 LKFTTNELYLRFRKNLTKYLHRLYFKGFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLF 221 (659)
T ss_pred HHHHHhhhHhHHHHHHHHHHHHHHhccceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHh
Confidence 77888889999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred HhhchhhHHHHHHHHHHHHHHHHHhcCccccccHHHHHhccchHHHHHHHHhhHHHhhhcCChHHHHHHHHHHHHHHHHH
Q 000711 898 ALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEH 977 (1338)
Q Consensus 898 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~~~~~~e~i~~~~~~~~e~~~~~~~~~~~~~~ 977 (1338)
...++.+++.++.|++++..+.+...+++..++.+++++|+.||..|.+++.|+|.||+|+++..|.....++|++++++
T Consensus 222 ~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~ 301 (659)
T KOG0060|consen 222 ESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRYKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQH 301 (659)
T ss_pred hhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhhheeeeeecchhhhhhccCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhHHHHhhhhhHHHHHHH-HHHHHhhcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 978 SLLLLKKKWLFGILDDFVTKQLPHNVTWGLS-LLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKF 1056 (1338)
Q Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 1056 (1338)
....+..+|+.++.++++. .+...+.|.+. ..+ ..+....-.++.++...+..-+.++..++.+|+.+..+.+.+
T Consensus 302 l~~l~~~r~~l~f~~n~~~-Ylg~ilsy~vi~~p~---Fs~h~y~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~l 377 (659)
T KOG0060|consen 302 LRELMSFRFWLGFIDNIFD-YLGGILSYVVIAIPF---FSGHVYDDLSPAELSGLISNNAFVFIYLISAFGRLVDLSRDL 377 (659)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHhhheeeEEeeee---ecccccCCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhH
Confidence 9999888888887766554 22222222111 001 111011112356666666666666777888999999999999
Q ss_pred HHHHhHHhHHHHHHHHHhhcCCCC--------------CCccCC--ccCCCCCCCCCCceEEeeeEEeCCC-cccccccc
Q 000711 1057 VELSGGINRIFELEELLDAAQPGD--------------DEISGS--SQHKWNSTDYQDSISFSKLDIITPS-QKLLARQL 1119 (1338)
Q Consensus 1057 ~~~~~a~~Ri~~~~~~~~~~~~~~--------------~~~~~~--~~~~wp~~~~~g~I~f~nV~f~yp~-~~~vL~~l 1119 (1338)
.++++.+.||.|+.+..+....+. ...... .+..||. ...|+|++|++..|+ ++.+.+|+
T Consensus 378 s~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~---Dn~i~~e~v~l~tPt~g~~lie~L 454 (659)
T KOG0060|consen 378 SRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPA---DNAIEFEEVSLSTPTNGDLLIENL 454 (659)
T ss_pred HHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccc---cceEEeeeeeecCCCCCceeeeee
Confidence 999999999999988765432111 000011 1233444 357999999999998 56667889
Q ss_pred ceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccccCCcccEEEEcCCCCCCCCCHHHHhcCCCchH
Q 000711 1120 TFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSRE 1199 (1338)
Q Consensus 1120 sf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~~lr~~i~~VpQdP~LF~GTIReNL~~p~~~~ 1199 (1338)
||+|+.|+.+.|+||||||||||++.|.++|+..+|++..+...- -..+.||||.||+-.||+||++.||....
T Consensus 455 s~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~------~~~lfflPQrPYmt~GTLRdQvIYP~~~~ 528 (659)
T KOG0060|consen 455 SLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG------PKDLFFLPQRPYMTLGTLRDQVIYPLKAE 528 (659)
T ss_pred eeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC------CCceEEecCCCCccccchhheeeccCccc
Confidence 999999999999999999999999999999999999998654311 13599999999999999999999997543
Q ss_pred HHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC--cccCCCChhHHHHHHHHHHhhcCCCEE
Q 000711 1200 EAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL--NWEDILSLGEQQRLGMARLFFHKPKFG 1277 (1338)
Q Consensus 1200 ~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~--~~g~~LSgGQrQrlaiARAlLr~p~IL 1277 (1338)
+. +.....|+.|...|+.++|.+++++. +|||.++ +|.+.||+||+||||+||.++++|++.
T Consensus 529 ~~---------------~~~~~~d~~i~r~Le~v~L~hl~~r~-ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~A 592 (659)
T KOG0060|consen 529 DM---------------DSKSASDEDILRILENVQLGHLLERE-GGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFA 592 (659)
T ss_pred cc---------------cccCCCHHHHHHHHHHhhhhhHHHHh-CCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceE
Confidence 21 12234688999999999999999996 8999664 799999999999999999999999999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHhcCCeEEEeccCCCCcccccceEEEecCCCCeEEecCC
Q 000711 1278 ILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNWELRTIS 1337 (1338)
Q Consensus 1278 iLDEATSaLD~~te~~i~~~~~~~~~TvI~IAHRl~~i~~~d~~l~l~~g~g~~~~~~~~ 1337 (1338)
||||||||+|.|.|.++++.+++.|+|.|+|.||.++.+|||.+|.+ ||+|+|++..|.
T Consensus 593 iLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~kfHd~~L~~-~g~g~w~~~~I~ 651 (659)
T KOG0060|consen 593 ILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWKFHDYVLRM-DGRGSWRFHQID 651 (659)
T ss_pred EeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHhhhhEEEEe-cCCCceEEEEec
Confidence 99999999999999999999999999999999999999999999999 899999998874
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-63 Score=612.58 Aligned_cols=528 Identities=19% Similarity=0.243 Sum_probs=409.4
Q ss_pred HHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 88 LQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYI 167 (1338)
Q Consensus 88 l~~l~~~~~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 167 (1338)
+.+++..++++++. +.-+++.+++...+++..|.....++|...-.... ..+....+..++..++..+.+++
T Consensus 142 ~~~f~~~~~~~~~~-----l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~---~tL~vl~ig~~~~~l~~~~l~~l 213 (709)
T COG2274 142 LSWFIPLLFKYRRL-----LFEVLLASLLLQLLALATPLFSQIVIDKVLPDASR---STLTVLAIGLLLAALFEALLRLL 213 (709)
T ss_pred hHhHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCch---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777662 55566677777777777777777777765432221 22222222233334456778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccCCC-CCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc
Q 000711 168 TGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYA 246 (1338)
Q Consensus 168 ~~~l~~~~R~~lt~~l~~~~~~~~~~~~~~~~d~~-~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~ 246 (1338)
+.++..++.+++...+..++++|++++|++||.++ .++..+|+ +|++.+.+.+..-+...+..++.+++|. .+|+++
T Consensus 214 r~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l-~vm~~y 291 (709)
T COG2274 214 RTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFL-AVMFLY 291 (709)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 88888888888999999999999999999999865 66777776 5677655554444333333333333333 345677
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Q 000711 247 SPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRV 326 (1338)
Q Consensus 247 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~ 326 (1338)
+|.+++++++.+++.+++..++.|++++.+.++.+..++....+.+...++|+||..+.|.+...+|+++|.+..+...+
T Consensus 292 s~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~ 371 (709)
T COG2274 292 SWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFK 371 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 99999999888888888888899999999988888888888888888899999999999999999999999988775544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccccc-CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 327 VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNR 405 (1338)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~ 405 (1338)
..+...+.+.+..++...... .+++ ++..+. .+..|+|.. ++ +..+...+.+++.+++..+.++++
T Consensus 372 ~~~~~~~~~~~~~~l~~l~~v---~iL~----~G~~lVl~~~lTlG~L--iA----f~~l~~~f~~pi~~L~~~~~~~q~ 438 (709)
T COG2274 372 TEKLALILNTIKSLLQQLSSV---LILW----FGAILVLEGELTLGQL--VA----FNMLAGYFISPITRLSQLWTDFQQ 438 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHH----HHHHHHhcCCcchHHH--HH----HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 444343444433333322221 1222 322222 233466654 32 223344566788899999999999
Q ss_pred HHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCcCCCCcEEEEeEEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCcH
Q 000711 406 LSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGK 484 (1338)
Q Consensus 406 ~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~sGsGK 484 (1338)
...+.+|+.++++.++|.+.+... ...+...+.|+|+||+|.|+.+ .++|+|+||+|++||+++|+|+|||||
T Consensus 439 ~~~~~~rL~dil~~~~E~~~~~~~------~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGK 512 (709)
T COG2274 439 AKVALERLGDILDTPPEQEGDKTL------IHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGK 512 (709)
T ss_pred HHHHHHHHHHHhcCCccccccccc------ccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCH
Confidence 999999999999988775422110 0112236889999999999765 569999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCccEEEeCCCC------ccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHc
Q 000711 485 SSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV 558 (1338)
Q Consensus 485 STLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~ 558 (1338)
|||+|+|+|+|+|++|+|.+||.| ..+|++|+||+|++.+|+||++|||.++.+. .+++++.++++.+
T Consensus 513 STL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~------~~~e~i~~A~~~a 586 (709)
T COG2274 513 STLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPE------ATDEEIIEAAQLA 586 (709)
T ss_pred HHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCC------CCHHHHHHHHHHh
Confidence 999999999999999999999987 4578999999999999999999999998754 5789999999999
Q ss_pred CCchHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHcc--CCeEEEEec
Q 000711 559 DLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISH 633 (1338)
Q Consensus 559 ~l~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~~--~~t~i~itH 633 (1338)
|+++++.++|.++++ +.|.+||||||||++|||||+++|+||||||||||||+++|+.+++.+.+. |+|+|+|||
T Consensus 587 g~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaH 666 (709)
T COG2274 587 GAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAH 666 (709)
T ss_pred CcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEc
Confidence 999999999998776 578999999999999999999999999999999999999999999999874 799999999
Q ss_pred ChhhHhhcceEEEccCC
Q 000711 634 RPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 634 ~~~~~~~~d~i~~l~~~ 650 (1338)
|++++++||+|++|+++
T Consensus 667 Rl~ti~~adrIiVl~~G 683 (709)
T COG2274 667 RLSTIRSADRIIVLDQG 683 (709)
T ss_pred cchHhhhccEEEEccCC
Confidence 99999999999999973
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-63 Score=616.55 Aligned_cols=529 Identities=19% Similarity=0.211 Sum_probs=395.6
Q ss_pred HHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHH----HH
Q 000711 87 SLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTM----HS 162 (1338)
Q Consensus 87 ~l~~l~~~~~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 162 (1338)
++++++++.+|.|. ++++.++.++++-...-..+.+.+.++......+.+...+....|.++++++.++ +.
T Consensus 651 s~~~i~k~~~pe~~-----~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~ 725 (1228)
T KOG0055|consen 651 SFWRIFKLNKPEWP-----YLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNF 725 (1228)
T ss_pred cHHHHHHhccchhH-----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999655 3666777778888888888899999999988666554432222243333333333 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCC--CCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000711 163 TSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR--ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTW 240 (1338)
Q Consensus 163 ~~~~l~~~l~~~~R~~lt~~l~~~~~~~~~~~~~~~~d~~--~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~ 240 (1338)
++.|+-...+.+ |+.|+|.+.|++++++++.|||.. .+.+..|+++|...+...+.+-+..++..+... +...
T Consensus 726 ~q~~~f~~~ge~----Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~-~~~i 800 (1228)
T KOG0055|consen 726 LQHYFFGIAGEK----LTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAV-IIGI 800 (1228)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 455555555555 999999999999999999999852 366778999999988777777666665554432 2333
Q ss_pred HHHHhchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHH
Q 000711 241 RLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKAL 320 (1338)
Q Consensus 241 ~l~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~ 320 (1338)
.+.++++|.+++++++.+|+..+......+.+.+...+..+...+......+..+|+++|+.|+.|++..+ .|.+.
T Consensus 801 iiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~----~y~~~ 876 (1228)
T KOG0055|consen 801 IIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFME----LYKEE 876 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHH----HHHHH
Confidence 44556788888888888887766555555555555555555555666677777789999999999998874 44443
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccccCC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 321 TRH-MRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPD-TSTLGRAKMLSNLRYHTSVIISLFQSLGTLSI 398 (1338)
Q Consensus 321 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~ 398 (1338)
.+. .+...++.++.++...+...++....++.+ |+++.+... ..++... + .. +..+......+++...
T Consensus 877 l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f----~~G~~Li~~g~~~~~~~--~---~v-f~~l~~ta~~~~~~~s 946 (1228)
T KOG0055|consen 877 LEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSF----WYGARLISNGEMTFEDV--F---RV-FMALSFTAMALGQASS 946 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHhcCCcCHHHH--H---HH-HHHHHHHHHHHHHHHh
Confidence 332 233344555555544333222222222222 344443322 2233321 1 11 1122222345667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCcCCCCcEEEEeEEEEcCC--CCeeeeeeeEEEeCCCEEEE
Q 000711 399 SSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLI 476 (1338)
Q Consensus 399 ~~~~l~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~--~~~~l~~~sl~i~~G~~~~i 476 (1338)
....+.++..++.+++++++.++.++.++. .......-.|.|+|+||+|.||. +.++|+|+||++++|+.+||
T Consensus 947 ~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~-----~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvAL 1021 (1228)
T KOG0055|consen 947 YAPDISKAKIAAGSIFEILDRKPTIDPDST-----SGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVAL 1021 (1228)
T ss_pred hCcHHHHHHHHHHHHHHHhcCCCCCCCCCC-----CCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEE
Confidence 788899999999999999998876553210 11111123578999999999996 35899999999999999999
Q ss_pred EcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC------ccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHH
Q 000711 477 TGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGG 550 (1338)
Q Consensus 477 ~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~ 550 (1338)
||||||||||++.+|.++|+|++|.|.+||.| ..+|++|+.|.|+|.||++||||||+||.. ..+.++
T Consensus 1022 VG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~------~vs~~e 1095 (1228)
T KOG0055|consen 1022 VGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSE------EVSEEE 1095 (1228)
T ss_pred ECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCC------CCCHHH
Confidence 99999999999999999999999999999987 357899999999999999999999999932 268899
Q ss_pred HHHHHHHcCCchHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cC
Q 000711 551 MVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MG 625 (1338)
Q Consensus 551 ~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~ 625 (1338)
+.++++.++.++|+..+|.++++ +.|.+||||||||||||||+++||+||||||+|||||.++|+.++++|.+ .|
T Consensus 1096 Ii~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~g 1175 (1228)
T KOG0055|consen 1096 IIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEG 1175 (1228)
T ss_pred HHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcC
Confidence 99999999999999999998777 46899999999999999999999999999999999999999999999986 59
Q ss_pred CeEEEEecChhhHhhcceEEEccCC
Q 000711 626 TSCITISHRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 626 ~t~i~itH~~~~~~~~d~i~~l~~~ 650 (1338)
+|+|+|+||++++++||.|.|++++
T Consensus 1176 RT~IvIAHRLSTIqnaD~I~Vi~~G 1200 (1228)
T KOG0055|consen 1176 RTTIVIAHRLSTIQNADVIAVLKNG 1200 (1228)
T ss_pred CcEEEEecchhhhhcCCEEEEEECC
Confidence 9999999999999999999999973
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-62 Score=622.75 Aligned_cols=528 Identities=20% Similarity=0.222 Sum_probs=398.3
Q ss_pred HHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc-ChhHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 86 KSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLR-RVPLFFQLISENILLCFLLSTMHSTS 164 (1338)
Q Consensus 86 ~~l~~l~~~~~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (1338)
..+++++++++|.++ . ++..+++.++.+.+.+.+|.+.+.++|.+..+ +...|...++..++ +.++..+.
T Consensus 147 ~~~~~l~~~~~~~~~----~-l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 217 (711)
T TIGR00958 147 DLLFRLLGLSGRDWP----W-LISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCL----LSIASSVS 217 (711)
T ss_pred hHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----HHHHHHHH
Confidence 346788888887655 2 66677778888899999999999999998744 44444433322222 22223334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCC-CCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000711 165 KYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLC 243 (1338)
Q Consensus 165 ~~l~~~l~~~~R~~lt~~l~~~~~~~~~~~~~~~~d~~-~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~ 243 (1338)
.+++..+.......+..+++.+.|+++.+.+++++++. .++..+|+++|++.+.+.+...+..++..++..+...+ ++
T Consensus 218 ~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~-~l 296 (711)
T TIGR00958 218 AGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLG-FM 296 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 44555555555555888899999999999999998764 67999999999999888777766666655554443333 34
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHH
Q 000711 244 SYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRH 323 (1338)
Q Consensus 244 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~ 323 (1338)
++++|.+++++++..++..++..+++++..+...+.++.++++.....+..+++++||.|++|+.+.+++.+..++..+.
T Consensus 297 ~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~ 376 (711)
T TIGR00958 297 LWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQL 376 (711)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 45788888887777777777777788888888888888888888888888899999999999999998887777766654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccccc-CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 324 MRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRR 402 (1338)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 402 (1338)
..+..............+.. + ....+++ +++.+. .+..+.|.. ++. ..+...+..++..+...+..
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~-~--~~~~il~----~g~~lv~~g~it~G~l--va~----~~~~~~l~~~l~~l~~~~~~ 443 (711)
T TIGR00958 377 NKRKALAYAGYLWTTSVLGM-L--IQVLVLY----YGGQLVLTGKVSSGNL--VSF----LLYQEQLGEAVRVLSYVYSG 443 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHH-H--HHHHHHH----HHHHHHHcCCCCHHHH--HHH----HHHHHHHHHHHHHHHHHHHH
Confidence 43322222111111111110 1 1111111 111111 122355533 222 23445566788888899999
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCcCCCCcEEEEeEEEEcCC--CCeeeeeeeEEEeCCCEEEEEcCC
Q 000711 403 LNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPN 480 (1338)
Q Consensus 403 l~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~--~~~~l~~~sl~i~~G~~~~i~G~s 480 (1338)
+++..++.+|+.++++.+++.+..... ......+.|+|+||+|.||+ ++++|+|+||+|++||+++|+|||
T Consensus 444 ~~~~~~a~~ri~~~l~~~~~~~~~~~~-------~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~S 516 (711)
T TIGR00958 444 MMQAVGASEKVFEYLDRKPNIPLTGTL-------APLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPS 516 (711)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCC-------CCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCC
Confidence 999999999999999765443211100 00112457999999999986 368999999999999999999999
Q ss_pred CCcHHHHHHHHcCCCCCCccEEEeCCCC------ccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHH
Q 000711 481 GSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVEL 554 (1338)
Q Consensus 481 GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~ 554 (1338)
|||||||+++|+|+|+|++|+|.+||.+ .+++++|+||||+|++|++|+||||.|+.+. .+++++.++
T Consensus 517 GsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~------~~~e~i~~a 590 (711)
T TIGR00958 517 GSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTD------TPDEEIMAA 590 (711)
T ss_pred CCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCC------CCHHHHHHH
Confidence 9999999999999999999999999976 3467889999999999999999999998642 468899999
Q ss_pred HHHcCCchHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHccCCeEEEE
Q 000711 555 LKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITI 631 (1338)
Q Consensus 555 l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~t~i~i 631 (1338)
++.++++++++++|.+.++ ++|.+||||||||++||||++++|+++|||||||+||+++|+.+++.....++|+|+|
T Consensus 591 l~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiI 670 (711)
T TIGR00958 591 AKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLI 670 (711)
T ss_pred HHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEE
Confidence 9999999999999876554 4688999999999999999999999999999999999999999999444468999999
Q ss_pred ecChhhHhhcceEEEccC
Q 000711 632 SHRPALVAFHDVVLSLDG 649 (1338)
Q Consensus 632 tH~~~~~~~~d~i~~l~~ 649 (1338)
|||+++++.+|+|++|++
T Consensus 671 tHrl~~i~~aD~IivL~~ 688 (711)
T TIGR00958 671 AHRLSTVERADQILVLKK 688 (711)
T ss_pred eccHHHHHhCCEEEEEEC
Confidence 999999999999999986
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-61 Score=610.71 Aligned_cols=533 Identities=15% Similarity=0.174 Sum_probs=392.4
Q ss_pred HHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh--cChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 88 LQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFL--RRVPLFFQLISENILLCFLLSTMHSTSK 165 (1338)
Q Consensus 88 l~~l~~~~~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (1338)
+++++++++|+++. +++.+++.++...+.+..|.+.+.++|.+.. .+...++. +++++++..++..+..
T Consensus 10 ~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 80 (588)
T PRK11174 10 TRWLKQQSKPAKRW-----LNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLP----PFILLILLFVLRALLA 80 (588)
T ss_pred hHHHHHHhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHH----HHHHHHHHHHHHHHHH
Confidence 46788899888762 5566677778888888899999999998753 22222221 2222223334455566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCC-CCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000711 166 YITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCS 244 (1338)
Q Consensus 166 ~l~~~l~~~~R~~lt~~l~~~~~~~~~~~~~~~~d~~-~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~ 244 (1338)
|+..++..+....+..+++.+.++++...+.+++++. .++..+|+++|++.+.+.+...+..++..++..+... .+++
T Consensus 81 ~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~ 159 (588)
T PRK11174 81 WLRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLIL-IAVF 159 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 6666666666667889999999999999999998765 6799999999999988877766666555554433332 3445
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 000711 245 YASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324 (1338)
Q Consensus 245 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~ 324 (1338)
+++|.+++++++.+++..++..+++++..+...+.++..+++.....+..+++++||.|++|+.+.+++.+..++..+..
T Consensus 160 ~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~ 239 (588)
T PRK11174 160 PINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRT 239 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 67888888777776666666666777777777777777777877778888899999999999999987776666655543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHhcccccCCcc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 325 RVVLHDHWWFGMIQDFLLKYLGATVAVIL-IIEPFFAGNLKPDTS--TLGRAKMLSNLRYHTSVIISLFQSLGTLSISSR 401 (1338)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 401 (1338)
.+..+.......+..+. ....+..++ +...++.|.+..+.. +++....+ ....+...++.++..+...+.
T Consensus 240 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~t~G~l~~~~~~~~~~----~~~~l~~~~~~pl~~l~~~~~ 312 (588)
T PRK11174 240 MEVLRMAFLSSAVLEFF---ASISIALVAVYFGFSYLGELNFGHYGTGVTLFAGF----FVLILAPEFYQPLRDLGTFYH 312 (588)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcccccccccccchHHHHH----HHHHHhHHHHHHHHHHHHHHH
Confidence 33322222122211111 111111111 111112233322211 11101101 111233456678888888899
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCcCCCCcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCC
Q 000711 402 RLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNG 481 (1338)
Q Consensus 402 ~l~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sG 481 (1338)
.+++...+.+|+.++++.+++... +... . ......+.|+|+||+|.|++++++|+|+||+|++||+++|+||||
T Consensus 313 ~~~~~~~~~~ri~~~l~~~~~~~~-~~~~----~-~~~~~~~~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SG 386 (588)
T PRK11174 313 AKAQAVGAAESLVTFLETPLAHPQ-QGEK----E-LASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSG 386 (588)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccC-CCcc----c-cCCCCCceEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCC
Confidence 999999999999999876543211 0000 0 000113469999999877667889999999999999999999999
Q ss_pred CcHHHHHHHHcCCCCCCccEEEeCCCC------ccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHH
Q 000711 482 SGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELL 555 (1338)
Q Consensus 482 sGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l 555 (1338)
||||||+++|+|+| |++|+|.+||.+ .+++++|+||||+|++|++||+|||.++.+ +.+++++++++
T Consensus 387 sGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~------~~~~eei~~al 459 (588)
T PRK11174 387 AGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNP------DASDEQLQQAL 459 (588)
T ss_pred CCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCC------CCCHHHHHHHH
Confidence 99999999999999 899999999975 346789999999999999999999999853 26789999999
Q ss_pred HHcCCchHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEE
Q 000711 556 KNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCIT 630 (1338)
Q Consensus 556 ~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~ 630 (1338)
+.++++++++++|.+.++ +.|.+|||||||||+||||++++|+++|||||||+||+++++.+++.+++ .++|+|+
T Consensus 460 ~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIi 539 (588)
T PRK11174 460 ENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLM 539 (588)
T ss_pred HHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999987665 46889999999999999999999999999999999999999999998876 4899999
Q ss_pred EecChhhHhhcceEEEccCC
Q 000711 631 ISHRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 631 itH~~~~~~~~d~i~~l~~~ 650 (1338)
||||+++++.+|+|++++++
T Consensus 540 ItHrl~~i~~aD~Iivl~~G 559 (588)
T PRK11174 540 VTHQLEDLAQWDQIWVMQDG 559 (588)
T ss_pred EecChHHHHhCCEEEEEeCC
Confidence 99999999999999999863
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-60 Score=610.62 Aligned_cols=534 Identities=19% Similarity=0.230 Sum_probs=400.5
Q ss_pred HHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 88 LQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYI 167 (1338)
Q Consensus 88 l~~l~~~~~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 167 (1338)
++.+++.++++++. ++..++++++...+++..|.+.+.++|.+........ +...++.++++.++..+..|+
T Consensus 142 ~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~ 213 (710)
T TIGR03796 142 LRALWRRLRGSRGA-----LLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDW---LRPLLLGMGLTALLQGVLTWL 213 (710)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhH---HHHHHHHHHHHHHHHHHHHHH
Confidence 45666777776552 4556666777778888899999999998774432221 111222222333445667778
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccCCC-CCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc
Q 000711 168 TGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYA 246 (1338)
Q Consensus 168 ~~~l~~~~R~~lt~~l~~~~~~~~~~~~~~~~d~~-~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~ 246 (1338)
+.++..++...+..+++.++|+++.+.|+++++++ .++..+|+++| +.+.+.+...+...+..++..+.+.+. ++++
T Consensus 214 ~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~-l~~~ 291 (710)
T TIGR03796 214 QLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALL-MLLY 291 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 88888888888999999999999999999998765 67999999988 566666655555555444444444333 4467
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Q 000711 247 SPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRV 326 (1338)
Q Consensus 247 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~ 326 (1338)
+|.+++++++..++..++..++.++..+...+.++..+++.....+...++++||.+++|+.+.+++.+.+.+..+...+
T Consensus 292 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 371 (710)
T TIGR03796 292 DPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQE 371 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHH
Confidence 88888887777776666677788888888878888888888888888889999999999999999998888777765544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccccc-CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 327 VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNR 405 (1338)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~ 405 (1338)
..+...+...+..++... ....+++ +++.+. .+..+.|.. ++ +..++..++.++..+...+.+++.
T Consensus 372 ~~~~~~~~~~~~~~i~~~---~~~~il~----~g~~~v~~g~lt~G~l--va----~~~l~~~~~~p~~~l~~~~~~~~~ 438 (710)
T TIGR03796 372 LGVLTQILGVLPTLLTSL---NSALILV----VGGLRVMEGQLTIGML--VA----FQSLMSSFLEPVNNLVGFGGTLQE 438 (710)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHH----HHHHHHHcCCCCHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433333333322222111 1111111 111111 122355543 22 223445566788888889999999
Q ss_pred HHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCcCCCCcEEEEeEEEEcCC-CCeeeeeeeEEEeCCCEEEEEcCCCCcH
Q 000711 406 LSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGK 484 (1338)
Q Consensus 406 ~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~-~~~~l~~~sl~i~~G~~~~i~G~sGsGK 484 (1338)
...+.+|+.++++.+++.+..................+.|+++||+|.|++ ++++|+|+||+|++||+++|+|||||||
T Consensus 439 ~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGK 518 (710)
T TIGR03796 439 LEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGK 518 (710)
T ss_pred HHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCH
Confidence 999999999999765543211000000000000112457999999999986 4689999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCccEEEeCCCC------ccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHc
Q 000711 485 SSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV 558 (1338)
Q Consensus 485 STLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~ 558 (1338)
|||+++|+|+|+|++|+|.+||.+ .+++++|+||||+|++|+||++|||.++.+ ..+++++.++++.+
T Consensus 519 STLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~------~~~~~~i~~al~~~ 592 (710)
T TIGR03796 519 STIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDP------TIPDADLVRACKDA 592 (710)
T ss_pred HHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCC------CCCHHHHHHHHHHh
Confidence 999999999999999999999976 346889999999999999999999998743 25788999999999
Q ss_pred CCchHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHccCCeEEEEecCh
Q 000711 559 DLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRP 635 (1338)
Q Consensus 559 ~l~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~t~i~itH~~ 635 (1338)
+++++++++|.+.++ +.|.+|||||||||+||||++++|+++|||||||+||+++|+.+++.+++.++|+|+||||+
T Consensus 593 ~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl 672 (710)
T TIGR03796 593 AIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRL 672 (710)
T ss_pred CCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 999999999976554 57899999999999999999999999999999999999999999999998899999999999
Q ss_pred hhHhhcceEEEccCC
Q 000711 636 ALVAFHDVVLSLDGE 650 (1338)
Q Consensus 636 ~~~~~~d~i~~l~~~ 650 (1338)
++++.+|+|++|+++
T Consensus 673 ~~i~~~D~Iivl~~G 687 (710)
T TIGR03796 673 STIRDCDEIIVLERG 687 (710)
T ss_pred HHHHhCCEEEEEeCC
Confidence 999999999999863
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-61 Score=597.53 Aligned_cols=459 Identities=21% Similarity=0.299 Sum_probs=323.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhcccCCCCCCccchhHHHHHHHHHHHHHHHHHhhHh-----
Q 000711 811 SSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKP----- 885 (1338)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~~~~ff~~~~~~~~~~~~~~Rls~D~~~l~~~l~~~~~~~i~~----- 885 (1338)
..+..+...++..++...+..++++|+++.. ..||.. +..++..+|+ +|++.+.+.+.+.+...+..
T Consensus 211 ~~lr~~~~~~~~~rld~~l~~~~~~hll~Lp---l~~f~~----r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~ 282 (709)
T COG2274 211 RLLRTYLIAHLGKRLDLELSGRFFRHLLRLP---LSYFEK----RSVGEIISRV-RELEQIREFLTGSILTLIIDLLFAL 282 (709)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHcCc---HHHccC----CChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555532 356652 3446667776 56777776666544433322
Q ss_pred --HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhcCccccccHHHHHhccchHHHHHHHHhhHHHhhhcCChHHH
Q 000711 886 --SVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGARE 963 (1338)
Q Consensus 886 --~~~i~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~~~~~~e~i~~~~~~~~e 963 (1338)
+..+++++|.|+++. ++.+.+++++...+. |.+.+.+++..+..+.-.....+...++++++..+.|.+.
T Consensus 283 i~l~vm~~ys~~L~li~----l~~~~l~~l~~~~~~----~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~ 354 (709)
T COG2274 283 IFLAVMFLYSWKLTLIV----LAAIPLNVLITLIFQ----PLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRF 354 (709)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHH
Confidence 223356788887664 222223332222222 2233334444333333344445556688999999888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhhhHHHHHHHHHHHHhhcccchhhhchHHHHHHHHHHHHHHHHHH
Q 000711 964 KAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSF 1043 (1338)
Q Consensus 964 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~~~~~~~~~~ 1043 (1338)
....++++.+..+...+..+..-..+....++. .+...+.+|++........ .+.|.+.++ .+..++..
T Consensus 355 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~l~~v~iL~~G~~lVl~~~--lTlG~LiAf----~~l~~~f~ 423 (709)
T COG2274 355 RSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQ-----QLSSVLILWFGAILVLEGE--LTLGQLVAF----NMLAGYFI 423 (709)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCC--cchHHHHHH----HHHHHHHH
Confidence 777777777776655444333333333222222 2223344455443322211 133333322 23455667
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHHHHHHhhcCCCCCCccCCccCCCCCCCCCCceEEeeeEEeCCCc-cccccccceE
Q 000711 1044 LAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQ-KLLARQLTFE 1122 (1338)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~a~~Ri~~~~~~~~~~~~~~~~~~~~~~~~wp~~~~~g~I~f~nV~f~yp~~-~~vL~~lsf~ 1122 (1338)
.++..+.+...+++++..+.+|+.++.+.+++.+.+.. +.. .+...|+|+|+||+|+|+.+ +++|+|+||+
T Consensus 424 ~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~-----~~~---~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~ 495 (709)
T COG2274 424 SPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKT-----LIH---LPKLQGEIEFENVSFRYGPDDPPVLEDLSLE 495 (709)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc-----ccc---ccccCceEEEEEEEEEeCCCCcchhhceeEE
Confidence 78899999999999999999999999887655332110 111 12247999999999988664 7799999999
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEEEEcCCCCCCCCCHHHHhcC--CCch
Q 000711 1123 IVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIY--PLSR 1198 (1338)
Q Consensus 1123 I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~~VpQdP~LF~GTIReNL~~--p~~~ 1198 (1338)
|+|||+|||||+||||||||+++|.|+|+|++|+|.+||.|++++ ..+|++|+||||||+||+|||||||+. |...
T Consensus 496 I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~ 575 (709)
T COG2274 496 IPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEAT 575 (709)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCC
Confidence 999999999999999999999999999999999999999999998 567889999999999999999999987 5556
Q ss_pred HHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC-cccCCCChhHHHHHHHHHHhhcCCCEE
Q 000711 1199 EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFG 1277 (1338)
Q Consensus 1199 ~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~IL 1277 (1338)
+|++++||+.+++++ ++.++|.||||.+ +.|.+|||||||||+||||+++||+||
T Consensus 576 ~e~i~~A~~~ag~~~------------------------fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~IL 631 (709)
T COG2274 576 DEEIIEAAQLAGAHE------------------------FIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKIL 631 (709)
T ss_pred HHHHHHHHHHhCcHH------------------------HHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEE
Confidence 677788888877644 3445588999998 678999999999999999999999999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1278 ILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1278 iLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
||||||||||.++|+.+++.+.+ .|+|+|+||||+++++.+|+++++++|+
T Consensus 632 lLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gk 684 (709)
T COG2274 632 LLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGK 684 (709)
T ss_pred EEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCc
Confidence 99999999999999999887655 4799999999999999999999997663
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-62 Score=575.88 Aligned_cols=199 Identities=32% Similarity=0.396 Sum_probs=165.5
Q ss_pred cEEEEeEEEEcCCC---CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCC----ccEEEeCCCC------c-
Q 000711 444 YIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV----SGHIAKPGVG------S- 509 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~---~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~----~G~i~~~~~~------~- 509 (1338)
.++++|+++.|... .++++|+||++.+||+++|+|+|||||||+.++|+|+.++. +|+|.++|.+ .
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 68999999877542 36999999999999999999999999999999999999988 8999999975 1
Q ss_pred --c-ccccEEEEecCCCC---CCCCHHHHhcCCCCCCc-ccCCCCHHHHHHHHHHcCCchHHhc--CCCCccccCCCCCC
Q 000711 510 --D-LNKEIFYVPQRPYT---AVGTLRDQLIYPLTSDQ-EVEPLTHGGMVELLKNVDLEYLLDR--YPPEKEINWGDELS 580 (1338)
Q Consensus 510 --~-~~~~i~~v~Q~~~l---~~~tl~eni~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~--~~~~~~~~~g~~LS 580 (1338)
. ..+.|+|+||+|.- +..||.++|.-...... .......++..++++.+++.+-..+ +| .+||
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yP--------heLS 156 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYP--------HQLS 156 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCC--------cccC
Confidence 1 23679999999952 34688888763211110 0012245678899999999876554 77 6899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHh-hcceEEEccCC
Q 000711 581 LGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 581 gGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
||||||+.||+||..+|++||+||||.+||+.++.+|.+.+++ .|+++|+|||++..+. .||+|++|.++
T Consensus 157 GG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G 231 (539)
T COG1123 157 GGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKG 231 (539)
T ss_pred chHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECC
Confidence 9999999999999999999999999999999999999998764 5999999999999885 79999999863
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-60 Score=608.83 Aligned_cols=529 Identities=17% Similarity=0.192 Sum_probs=400.8
Q ss_pred HHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 87 SLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKY 166 (1338)
Q Consensus 87 ~l~~l~~~~~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (1338)
.+++++++++++++ . ++..++++++.+.+.+..|.+.+.++|.+....... .++...+.++++.++..+..|
T Consensus 143 ~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~---~l~~~~~~~~~~~~~~~~~~~ 214 (708)
T TIGR01193 143 SLLKFIPLITRQKK----L-IVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMG---TLGIISIGLIIAYIIQQILSY 214 (708)
T ss_pred hHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChH---HHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777655 2 555666677788888899999999999876443211 112122222223344566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccCCC-CCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 000711 167 ITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSY 245 (1338)
Q Consensus 167 l~~~l~~~~R~~lt~~l~~~~~~~~~~~~~~~~d~~-~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~ 245 (1338)
+++++..++..++..+++.++|+++...|+++++++ .++..+|++ |++.+.+.+...+...+..++..+++... +++
T Consensus 215 ~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-l~~ 292 (708)
T TIGR01193 215 IQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLF-LVR 292 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 888888888888999999999999999999999765 678999997 88887776665554444443333333333 345
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Q 000711 246 ASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMR 325 (1338)
Q Consensus 246 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~ 325 (1338)
++|.+++++++.+++..++..++.++..+...+.++..++....+.+..+++++||.+++|+.+.+++.+.+.+..+...
T Consensus 293 ~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 372 (708)
T TIGR01193 293 QNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSF 372 (708)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 78888888877777777777778888888888888888888888888888999999999999999999888887766544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HhcccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 326 VVLHDHWWFGMIQDFLLKYLGATVAVILIIEP--FFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRL 403 (1338)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l 403 (1338)
+..+.......+..++.. + ....+++++. ++.| ..+.|.. ++. ..+...++.++.++...+.++
T Consensus 373 ~~~~~~~~~~~~~~~~~~-~--~~i~il~~g~~lv~~g-----~ls~G~l--va~----~~l~~~~~~pl~~l~~~~~~~ 438 (708)
T TIGR01193 373 KYQKADQGQQAIKAVTKL-I--LNVVILWTGAYLVMRG-----KLTLGQL--ITF----NALLSYFLTPLENIINLQPKL 438 (708)
T ss_pred HHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHcC-----CCCHHHH--HHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 433322222222222111 1 1111111111 1223 3356543 322 234455667888888999999
Q ss_pred HHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCcCCCCcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCc
Q 000711 404 NRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSG 483 (1338)
Q Consensus 404 ~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsG 483 (1338)
+....+.+|+.++++.+++.+.... . .......+.|+|+||+|.|++++++|+|+||+|++||+++|+||||||
T Consensus 439 ~~~~~~~~ri~~~l~~~~e~~~~~~-~-----~~~~~~~~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsG 512 (708)
T TIGR01193 439 QAARVANNRLNEVYLVDSEFINKKK-R-----TELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSG 512 (708)
T ss_pred HHHHHHHHHHHHHHcCCCccccccc-c-----cCCCCCCCcEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCC
Confidence 9999999999999876554321110 0 001112457999999999987778999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCccEEEeCCCC------ccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHH
Q 000711 484 KSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKN 557 (1338)
Q Consensus 484 KSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~ 557 (1338)
||||+++|+|+|+|++|+|.+||.+ .+++++|+||||+|++|+|||+|||.++... ..+++++.++++.
T Consensus 513 KSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~-----~~~~~~i~~a~~~ 587 (708)
T TIGR01193 513 KSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKE-----NVSQDEIWAACEI 587 (708)
T ss_pred HHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCC-----CCCHHHHHHHHHH
Confidence 9999999999999999999999976 3567899999999999999999999997421 2578899999999
Q ss_pred cCCchHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc-cCCeEEEEec
Q 000711 558 VDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA-MGTSCITISH 633 (1338)
Q Consensus 558 ~~l~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~-~~~t~i~itH 633 (1338)
++++++++++|.+.++ ++|.+||||||||++||||++++|+++|||||||+||+++|+.+++.+++ .++|+|+|||
T Consensus 588 a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitH 667 (708)
T TIGR01193 588 AEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAH 667 (708)
T ss_pred hCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEec
Confidence 9999999999986554 57899999999999999999999999999999999999999999999876 4899999999
Q ss_pred ChhhHhhcceEEEccCC
Q 000711 634 RPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 634 ~~~~~~~~d~i~~l~~~ 650 (1338)
|+++++.+|+|++|+++
T Consensus 668 r~~~~~~~D~i~~l~~G 684 (708)
T TIGR01193 668 RLSVAKQSDKIIVLDHG 684 (708)
T ss_pred chHHHHcCCEEEEEECC
Confidence 99999999999999863
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-59 Score=593.84 Aligned_cols=565 Identities=37% Similarity=0.629 Sum_probs=420.2
Q ss_pred HHhHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 742 VADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHL 821 (1338)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 821 (1338)
+..+++.+.|.+..+..+.++..++..+...+++..++.+.+..++.....+...|...+..+++..++..++..+..++
T Consensus 79 ~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~ 158 (659)
T TIGR00954 79 LDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYL 158 (659)
T ss_pred HHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666677665555555555555566666776666666666655555555555544444444455555666677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccccchhhcccCCCCCCccchhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhc
Q 000711 822 TARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTG 901 (1338)
Q Consensus 822 ~~~~~~~~r~~l~~~l~~~~l~~~~ff~~~~~~~~~~~~~~Rls~D~~~l~~~l~~~~~~~i~~~~~i~~~~~~l~~v~~ 901 (1338)
..++...||.+++.++++.++++..+|+........+|+++|+++|++.+...+...+..++.++++++++...+.....
T Consensus 159 ~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~ 238 (659)
T TIGR00954 159 LKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDSRIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALG 238 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88889999999999999999998777776544446789999999999999999998888888888777766665554233
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCccccccHHHHHhccchHHHHHHHHhhHHHhhhcCChHHHHHHHHHHHHHHHHHHHHH
Q 000711 902 QRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLL 981 (1338)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~~~~~~e~i~~~~~~~~e~~~~~~~~~~~~~~~~~~ 981 (1338)
+....++++++++.....+.+.+++.....+.++.++.++..+.+...++|+|++|+++..+.+.+.+.++++.+.....
T Consensus 239 ~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~ 318 (659)
T TIGR00954 239 SVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLI 318 (659)
T ss_pred hHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455566666677788889999999999999999999999999999999999999999999999999999888777
Q ss_pred HHHHHHhhhhhHHHHhhhhhHHHHH-HHHHHHHhhcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 982 LKKKWLFGILDDFVTKQLPHNVTWG-LSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELS 1060 (1338)
Q Consensus 982 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1060 (1338)
.+...++..+..++.......+.+. .+..+.. ..+......+.|.+...+..........+.+++.+......++++.
T Consensus 319 ~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~-~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~ 397 (659)
T TIGR00954 319 IKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFD-KTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLA 397 (659)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666666555444432111111111 1111111 0000000012343332222222334556778889999999999999
Q ss_pred hHHhHHHHHHHHHhhcCCCC----CCccCC--------ccCCCC---CCCCCCceEEeeeEEeCCCccccccccceEEeC
Q 000711 1061 GGINRIFELEELLDAAQPGD----DEISGS--------SQHKWN---STDYQDSISFSKLDIITPSQKLLARQLTFEIVP 1125 (1338)
Q Consensus 1061 ~a~~Ri~~~~~~~~~~~~~~----~~~~~~--------~~~~wp---~~~~~g~I~f~nV~f~yp~~~~vL~~lsf~I~~ 1125 (1338)
++.+||.++.+.+++.+... ...... .+..++ .....+.|+|+||+++||+++++|+|+||+|++
T Consensus 398 ~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~~~il~~isl~i~~ 477 (659)
T TIGR00954 398 GFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNGDVLIESLSFEVPS 477 (659)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCCCeeeecceEEECC
Confidence 99999999988765432110 000000 000010 011246799999999998777899999999999
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccccCCcccEEEEcCCCCCCCCCHHHHhcCCCchHHHHHHH
Q 000711 1126 GKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRA 1205 (1338)
Q Consensus 1126 GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~~lr~~i~~VpQdP~LF~GTIReNL~~p~~~~~~~~~a 1205 (1338)
||+++|+||||||||||+++|.|+|+|++|+|.+|+ |.+++||||+|++|++|++|||.||....+.
T Consensus 478 Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~---------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~---- 544 (659)
T TIGR00954 478 GNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA---------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDM---- 544 (659)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC---------CCcEEEECCCCCCCCcCHHHHHhcCCChhhh----
Confidence 999999999999999999999999999999999874 3579999999999999999999887532110
Q ss_pred HhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCC
Q 000711 1206 LKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNA 1285 (1338)
Q Consensus 1206 ~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSa 1285 (1338)
..+...++++.++++.+++.+++++ |.||||..+|+.+||||||||++||||++++|+++|||||||+
T Consensus 545 -----------~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~ 612 (659)
T TIGR00954 545 -----------KRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSA 612 (659)
T ss_pred -----------hccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccC
Confidence 0011235667888999999988877 8899999889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEeccCCCCcccccceEEEecCCCCeEE
Q 000711 1286 TSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNWEL 1333 (1338)
Q Consensus 1286 LD~~te~~i~~~~~~~~~TvI~IAHRl~~i~~~d~~l~l~~g~g~~~~ 1333 (1338)
||+++++.+++.+++.|+|+|+|+||++++++||++++| +|+|+|++
T Consensus 613 LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~~~d~il~l-~~~g~~~~ 659 (659)
T TIGR00954 613 VSVDVEGYMYRLCREFGITLFSVSHRKSLWKYHEYLLYM-DGRGGYQF 659 (659)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEeCchHHHHhCCEEEEE-eCCCCccC
Confidence 999999999998877899999999999999999999999 79999985
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-59 Score=587.14 Aligned_cols=515 Identities=19% Similarity=0.187 Sum_probs=369.8
Q ss_pred HHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 89 QVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYIT 168 (1338)
Q Consensus 89 ~~l~~~~~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 168 (1338)
++++++++|+++. ++..+++.++.+.+.+..|.+.+.++|.+...+. .+ . +...++.+++..++..+..|+.
T Consensus 2 ~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~-~-~~~~~~~~~~~~~~~~~~~~~~ 73 (529)
T TIGR02868 2 LRILPLLQPRTRR-----LVVAILLGALALGSAVALLGVSAWLISRAAEMPP-VL-Y-LSVAAVAVRAFGIGRAVFRYLE 73 (529)
T ss_pred hhHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hH-H-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777776652 4555666777778888899999999987765432 11 1 1111111112233455667777
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccCCC-CCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhch
Q 000711 169 GTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYAS 247 (1338)
Q Consensus 169 ~~l~~~~R~~lt~~l~~~~~~~~~~~~~~~~d~~-~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~ 247 (1338)
.++..+...++..++|.+.|++....+.+++++. .++..+|+++|++.+.+.+...+..++..++..+.+. .++++++
T Consensus 74 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~ 152 (529)
T TIGR02868 74 RLVGHDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAV-AAIALLS 152 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh
Confidence 7777777777889999999999999999998764 6799999999999988877766666555554443333 2344678
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Q 000711 248 PKYVFWILAYVLGAGTMMRNFSPAF-GKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRV 326 (1338)
Q Consensus 248 ~~l~~~~l~~~~~~~~~~~~~~~~~-~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~ 326 (1338)
|.+++++++.+++..++..++.++. .+...+.++..+++.....+..+++++||.|+.|+.+.+++++..++..+...+
T Consensus 153 ~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (529)
T TIGR02868 153 VPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERR 232 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 8888777666555544444444443 334455566667777778888889999999999999997777666555443332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccc-cCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 327 VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNR 405 (1338)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~ 405 (1338)
. .+..+................+++ +++.. ..+..+.|.. .+. ..+...++.++..+...+..+++
T Consensus 233 ~---~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~g~~t~g~l--~~~----~~~~~~~~~~~~~l~~~~~~~~~ 299 (529)
T TIGR02868 233 A---ARATGLGAAAQLLAAGLAVLGALW----AGGPAVADGTLAPATL--AVL----VLLPLAAFEAFAPLPAAAQALTR 299 (529)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhCCCCChhHH--HHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 222222222211111111111111 22211 1122344432 222 22333455567777777888899
Q ss_pred HHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCcCCCCcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHH
Q 000711 406 LSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKS 485 (1338)
Q Consensus 406 ~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKS 485 (1338)
...+.+|+.++++.+++.+..+.. .. .......+.|+|+||+|.|++++++|+|+||++++||+++|+||||||||
T Consensus 300 ~~~~~~ri~~~l~~~~~~~~~~~~--~~--~~~~~~~~~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKS 375 (529)
T TIGR02868 300 VRAAAERIEEVTGAKGPRPEGVVP--AA--GALGLGKPTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKS 375 (529)
T ss_pred HHHHHHHHHHHhcCCCCcCCCCCC--CC--cccCCCCceEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHH
Confidence 999999999998765442211100 00 00111235699999999998767899999999999999999999999999
Q ss_pred HHHHHHcCCCCCCccEEEeCCCC-----ccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCC
Q 000711 486 SLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDL 560 (1338)
Q Consensus 486 TLl~~l~g~~~~~~G~i~~~~~~-----~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l 560 (1338)
||+++|+|+|+|++|+|.+||.+ .+++++|+||||+|++|++||+|||.++.+ ..++++++++++.+++
T Consensus 376 TLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~------~~~~e~i~~al~~a~l 449 (529)
T TIGR02868 376 TLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRP------DATDEELWAALERVGL 449 (529)
T ss_pred HHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCC------CCCHHHHHHHHHHcCC
Confidence 99999999999999999999976 245678999999999999999999999853 2578899999999999
Q ss_pred chHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecCh
Q 000711 561 EYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRP 635 (1338)
Q Consensus 561 ~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~ 635 (1338)
+++++++|++.++ ++|.+||||||||++||||++++|+++|||||||+||+++|+.+++.+.+ .++|+|+||||+
T Consensus 450 ~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 450 ADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999987665 57889999999999999999999999999999999999999999999976 489999999995
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-59 Score=602.36 Aligned_cols=525 Identities=20% Similarity=0.198 Sum_probs=394.0
Q ss_pred HHHHHHH-HhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc-ChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 88 LQVLAAI-LLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLR-RVPLFFQLISENILLCFLLSTMHSTSK 165 (1338)
Q Consensus 88 l~~l~~~-~~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (1338)
++++++. ++++++ . ++..++++++...+++..|...+.++|.+... +...++ ..++.++++.++..+..
T Consensus 123 ~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~----~~~~~~~~~~~~~~~~~ 193 (686)
T TIGR03797 123 LRDLLRFALRGARR----D-LLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLV----QIALALLAAAVGAAAFQ 193 (686)
T ss_pred HHHHHHHHHhhHHH----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHH----HHHHHHHHHHHHHHHHH
Confidence 3445554 344433 2 55666677888888889999999999987643 322222 22222223334455667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCC-CCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000711 166 YITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCS 244 (1338)
Q Consensus 166 ~l~~~l~~~~R~~lt~~l~~~~~~~~~~~~~~~~d~~-~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~ 244 (1338)
|++.++..+....+..+++.++|+++...|+++++++ .++..+|++ |++.+.+.+...+...+..++..+.+. .+++
T Consensus 194 ~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~ 271 (686)
T TIGR03797 194 LAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNL-GLMF 271 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 7777777777777999999999999999999998765 578889997 788777666555444433333333333 3345
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 000711 245 YASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324 (1338)
Q Consensus 245 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~ 324 (1338)
+++|.+++++++.+++..++..++.++..+...+.++.+++......+...++++||.++.|+.+.+++.+.+++..+..
T Consensus 272 ~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 351 (686)
T TIGR03797 272 YYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLE 351 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 56888888777666666666667788888888888888888888888888899999999999999998888888777655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 325 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLN 404 (1338)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~ 404 (1338)
.+..+...+...+..++. ......+++++.++ ...+..+.|.. ++. ..++..++.++.++...+.+++
T Consensus 352 ~~~~~~~~~~~~~~~~i~---~~~~~~il~~g~~l---v~~g~ltiG~l--va~----~~l~~~~~~pl~~l~~~~~~~~ 419 (686)
T TIGR03797 352 LSAQRIENLLTVFNAVLP---VLTSAALFAAAISL---LGGAGLSLGSF--LAF----NTAFGSFSGAVTQLSNTLISIL 419 (686)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---HHcCCCCHHHH--HHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 554433333333322221 11111112211111 01123356543 222 2334456678888888999999
Q ss_pred HHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCcCCCCcEEEEeEEEEcCC-CCeeeeeeeEEEeCCCEEEEEcCCCCc
Q 000711 405 RLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSG 483 (1338)
Q Consensus 405 ~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~-~~~~l~~~sl~i~~G~~~~i~G~sGsG 483 (1338)
+...+.+|+.++++.+++.+.. .. ......+.|+|+||+|.|++ ++++|+|+||+|++||+++|+||||||
T Consensus 420 ~~~~~~~ri~~~l~~~~e~~~~-~~-------~~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsG 491 (686)
T TIGR03797 420 AVIPLWERAKPILEALPEVDEA-KT-------DPGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSG 491 (686)
T ss_pred HHHHHHHHHHHHhcCCcccccC-cC-------CCCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCC
Confidence 9999999999998765442211 00 00012357999999999964 578999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCccEEEeCCCC------ccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHH
Q 000711 484 KSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKN 557 (1338)
Q Consensus 484 KSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~ 557 (1338)
||||+|+|+|+|+|++|+|.+||.+ .+++++|+||||+|++|+||++|||.++.+ .+++++.++++.
T Consensus 492 KSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-------~~~e~i~~al~~ 564 (686)
T TIGR03797 492 KSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-------LTLDEAWEAARM 564 (686)
T ss_pred HHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-------CCHHHHHHHHHH
Confidence 9999999999999999999999975 346789999999999999999999999743 467899999999
Q ss_pred cCCchHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHccCCeEEEEecC
Q 000711 558 VDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHR 634 (1338)
Q Consensus 558 ~~l~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~t~i~itH~ 634 (1338)
++++++++++|.+.++ +.|.+||||||||++||||++++|+++|||||||+||+++|+++++.+++.++|+|+||||
T Consensus 565 a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr 644 (686)
T TIGR03797 565 AGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHR 644 (686)
T ss_pred cCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecC
Confidence 9999999999987655 5788999999999999999999999999999999999999999999999888999999999
Q ss_pred hhhHhhcceEEEccCC
Q 000711 635 PALVAFHDVVLSLDGE 650 (1338)
Q Consensus 635 ~~~~~~~d~i~~l~~~ 650 (1338)
+++++.+|+|++|+++
T Consensus 645 ~~~i~~~D~Iivl~~G 660 (686)
T TIGR03797 645 LSTIRNADRIYVLDAG 660 (686)
T ss_pred hHHHHcCCEEEEEECC
Confidence 9999999999999873
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-61 Score=537.35 Aligned_cols=568 Identities=35% Similarity=0.625 Sum_probs=459.0
Q ss_pred hhHHhHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 740 LRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIR 819 (1338)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 819 (1338)
.++..+.++.+|..+.+..+++..-.+.+.+++|++.+++.++|..+.....++...|...++-.+++++..++++...+
T Consensus 99 k~l~~L~Kilip~vfc~e~gll~~hs~~Li~RTfLSl~VA~LdGqlVk~Ivrk~~r~F~~~LlkW~liaiPAtFvNS~Ir 178 (728)
T KOG0064|consen 99 KRLNVLSKILIPTVFCKETGLLTAQSFFLISRTFLSLFVAKLDGQLVKNIVRKRGRQFLWDLLKWFLIAIPASFVNSAIR 178 (728)
T ss_pred HHHHHHHHHhcchHHHHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHhhhccHHHHHHHHH
Confidence 34556778889988888888888888888999999999999999999888888888887666666777788888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccccchhhcccCCCCCCccchhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh
Q 000711 820 HLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKAL 899 (1338)
Q Consensus 820 ~~~~~~~~~~r~~l~~~l~~~~l~~~~ff~~~~~~~~~~~~~~Rls~D~~~l~~~l~~~~~~~i~~~~~i~~~~~~l~~v 899 (1338)
++...+++..|.++.+|+.+.||.+..||++.++.+...|+||++|+|+..+.+..+.+...+..|+++++.++..|.-.
T Consensus 179 yle~klaLafrtrL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~s 258 (728)
T KOG0064|consen 179 YLESKLALAFRTRLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLDS 258 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888877654
Q ss_pred hchh---hHHHHHHHHHHHHHHHHHhcCccccccHHHHHhccchHHHHHHHHhhHHHhhhcCChHHHHHHHHHHHHHHHH
Q 000711 900 TGQR---GVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLE 976 (1338)
Q Consensus 900 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~~~~~~e~i~~~~~~~~e~~~~~~~~~~~~~ 976 (1338)
.... +..++...+.+...+++.+.|+|+++..+..+.++.+|+.|+++.++.|.|++|+|...|.+.++..|..+.+
T Consensus 259 ~~s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~ 338 (728)
T KOG0064|consen 259 ATSVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVE 338 (728)
T ss_pred hccccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 4322 2223444455566788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhHHHHhhhhhHHHHHH-H--HHHHHhhcccc-----hhhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 977 HSLLLLKKKWLFGILDDFVTKQLPHNVTWGL-S--LLYAMEHKGDR-----ALVSTQGELAHALRFLASVVSQSFLAFGD 1048 (1338)
Q Consensus 977 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~-----~~~~~~g~l~~~l~~~~~~~~~~~~~~~~ 1048 (1338)
+.....+.+.|+.++..|+.+...+...... + .+.+....... ..++...++..+-+.+ .....++..
T Consensus 339 qm~li~k~r~~YiMleqF~mKYvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL----~saAdAieR 414 (728)
T KOG0064|consen 339 QMNLIFKVRLWYIMLEQFVMKYTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLL----LSAADAIER 414 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHH----HHHHHHHHH
Confidence 8888888888888877777654322111000 0 00000000000 0011111222222222 223346677
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHHHHhhcCCCCCCccC-------------CccCCCCC---CCCCCceEEeeeEEeCCCc
Q 000711 1049 ILELHRKFVELSGGINRIFELEELLDAAQPGDDEISG-------------SSQHKWNS---TDYQDSISFSKLDIITPSQ 1112 (1338)
Q Consensus 1049 ~~~~~~~~~~~~~a~~Ri~~~~~~~~~~~~~~~~~~~-------------~~~~~wp~---~~~~g~I~f~nV~f~yp~~ 1112 (1338)
+...++.++++.+...|++++.+..++...+...... .....-|. ......|.++||..-.|+.
T Consensus 415 lMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~ 494 (728)
T KOG0064|consen 415 LMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITPAG 494 (728)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCceeccCc
Confidence 8888899999999999999877665543322111000 00000000 1123469999999999999
Q ss_pred cccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccccCCcccEEEEcCCCCCCCCCHHHHh
Q 000711 1113 KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQI 1192 (1338)
Q Consensus 1113 ~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~~lr~~i~~VpQdP~LF~GTIReNL 1192 (1338)
..|...+||.|+||..+.|.||+|||||||++.|-|+||...|...++-. .+|.||||.||+--||+||+|
T Consensus 495 ~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~---------~~mFYIPQRPYms~gtlRDQI 565 (728)
T KOG0064|consen 495 DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRP---------NNIFYIPQRPYMSGGTLRDQI 565 (728)
T ss_pred ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCC---------cceEeccCCCccCcCccccee
Confidence 89999999999999999999999999999999999999999999988753 569999999999999999999
Q ss_pred cCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCCChhHHHHHHHHHHhhc
Q 000711 1193 IYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFH 1272 (1338)
Q Consensus 1193 ~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSgGQrQrlaiARAlLr 1272 (1338)
.||++.++--. ....|.++..+|..|+|.+.+++. +|||...+|-+.||||||||+++||.+.|
T Consensus 566 IYPdS~e~~~~---------------kg~~d~dL~~iL~~v~L~~i~qr~-~g~da~~dWkd~LsgGekQR~~mARm~yH 629 (728)
T KOG0064|consen 566 IYPDSSEQMKR---------------KGYTDQDLEAILDIVHLEHILQRE-GGWDAVRDWKDVLSGGEKQRMGMARMFYH 629 (728)
T ss_pred ecCCcHHHHHh---------------cCCCHHHHHHHHHHhhHHHHHHhc-cChhhhccHHhhccchHHHHHHHHHHHhc
Confidence 99998654211 134688899999999999988885 78999999999999999999999999999
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHhcCCeEEEeccCCCCcccccceEEEecCCCCeEEecCC
Q 000711 1273 KPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNWELRTIS 1337 (1338)
Q Consensus 1273 ~p~ILiLDEATSaLD~~te~~i~~~~~~~~~TvI~IAHRl~~i~~~d~~l~l~~g~g~~~~~~~~ 1337 (1338)
+|+..+|||||||+..|.|..|.+.++..|.+.|+|+||+++++||...|.+ ||+|+|++++..
T Consensus 630 rPkyalLDEcTsAvsidvE~~i~~~ak~~gi~llsithrpslwk~h~~ll~~-dg~g~~q~~~ln 693 (728)
T KOG0064|consen 630 RPKYALLDECTSAVSIDVEGKIFQAAKDAGISLLSITHRPSLWKYHTHLLEF-DGEGGWQFRALN 693 (728)
T ss_pred CcchhhhhhhhcccccchHHHHHHHHHhcCceEEEeecCccHHHHHHHHHhc-cCCCCeeeccCC
Confidence 9999999999999999999999999988999999999999999999999999 999999998753
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-59 Score=601.08 Aligned_cols=527 Identities=18% Similarity=0.210 Sum_probs=396.6
Q ss_pred HHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 88 LQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLR-RVPLFFQLISENILLCFLLSTMHSTSKY 166 (1338)
Q Consensus 88 l~~l~~~~~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (1338)
++++++.++++++. +...++++++.+.+.+..|...+.++|.+... +...++ ..++.++++.++..+..|
T Consensus 135 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~ 205 (694)
T TIGR03375 135 KHWFWSTLKESWPL-----YRDVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLW----VLAIGVALAIVFDFVLKT 205 (694)
T ss_pred chHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHH----HHHHHHHHHHHHHHHHHH
Confidence 45566777666552 55556667777788888999999999876633 222222 122222223334556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc
Q 000711 167 ITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYA 246 (1338)
Q Consensus 167 l~~~l~~~~R~~lt~~l~~~~~~~~~~~~~~~~d~~~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~ 246 (1338)
++.++..+....+..+++.++|+|+...|+++.....++..+|+ +|++.+.+.+...+...+..++..+.+.. +++++
T Consensus 206 ~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~-~l~~~ 283 (694)
T TIGR03375 206 LRSYFLDVAGKKADLILSAKLFERVLGLRMEARPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLL-VIAII 283 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHH
Confidence 77777777777799999999999999999998444467888998 89998887766555444444443333333 34467
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Q 000711 247 SPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRV 326 (1338)
Q Consensus 247 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~ 326 (1338)
+|.+++++++.+++..++..++.++..+...+.++.+++......+...++++||.|+.|+.+.+++.+.+++..+...+
T Consensus 284 ~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 363 (694)
T TIGR03375 284 GGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLK 363 (694)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHH
Confidence 88888888777777776777788888888888888888888888888889999999999999999888888777665544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccccc-CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 327 VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNR 405 (1338)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~ 405 (1338)
..+.......+..++. ......+++ +++.+. .+..+.|.. ++ +..++..++.++..+...+..++.
T Consensus 364 ~~~~~~~~~~~~~~~~---~~~~~~il~----~g~~~v~~g~ls~G~l--~a----~~~~~~~~~~p~~~l~~~~~~~~~ 430 (694)
T TIGR03375 364 SRFLSNLATNFAQFIQ---QLVSVAIVV----VGVYLISDGELTMGGL--IA----CVMLSGRALAPLGQLAGLLTRYQQ 430 (694)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHcCCCCHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333222222222211 111111111 111111 123355543 32 223445566788888888899999
Q ss_pred HHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCcCCCCcEEEEeEEEEcCC-CCeeeeeeeEEEeCCCEEEEEcCCCCcH
Q 000711 406 LSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGK 484 (1338)
Q Consensus 406 ~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~-~~~~l~~~sl~i~~G~~~~i~G~sGsGK 484 (1338)
...+.+|+.++++.+++.+..... .......+.|+|+||+|.||+ ++++|+|+||+|++||+++|+|||||||
T Consensus 431 ~~~~~~ri~~il~~~~e~~~~~~~------~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGK 504 (694)
T TIGR03375 431 AKTALQSLDELMQLPVERPEGTRF------LHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGK 504 (694)
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCC------CCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCH
Confidence 999999999999875542211000 000112357999999999985 4689999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCccEEEeCCCC------ccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHc
Q 000711 485 SSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV 558 (1338)
Q Consensus 485 STLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~ 558 (1338)
|||+++|+|+|+|++|+|.+||.+ .+++++|+||||+|++|++|++|||.++.+ ..+++++.++++.+
T Consensus 505 STLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~------~~~~~~i~~a~~~~ 578 (694)
T TIGR03375 505 STLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAP------YADDEEILRAAELA 578 (694)
T ss_pred HHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCC------CCCHHHHHHHHHHc
Confidence 999999999999999999999975 356789999999999999999999999754 25789999999999
Q ss_pred CCchHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEec
Q 000711 559 DLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISH 633 (1338)
Q Consensus 559 ~l~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH 633 (1338)
+++++++++|.+.++ ++|.+||||||||++||||++++|+++|||||||+||+++|+.+++.+.+ .++|+|+|||
T Consensus 579 ~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItH 658 (694)
T TIGR03375 579 GVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTH 658 (694)
T ss_pred ChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 999999999986554 57899999999999999999999999999999999999999999999876 3899999999
Q ss_pred ChhhHhhcceEEEccCC
Q 000711 634 RPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 634 ~~~~~~~~d~i~~l~~~ 650 (1338)
|+++++.||+|++|+++
T Consensus 659 rl~~~~~~D~iivl~~G 675 (694)
T TIGR03375 659 RTSLLDLVDRIIVMDNG 675 (694)
T ss_pred CHHHHHhCCEEEEEeCC
Confidence 99999999999999863
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-59 Score=556.09 Aligned_cols=510 Identities=27% Similarity=0.449 Sum_probs=407.8
Q ss_pred HHHHHhhcchHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhcccC
Q 000711 775 SDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMS 854 (1338)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~~~~ff~~~~~~ 854 (1338)
..+++.+++..++.+...+...|+..+.++...++..........++..++..+||++|++++++.||.+..||+....+
T Consensus 63 ~v~~~~w~~~~~~aL~~~d~~~f~~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~ 142 (604)
T COG4178 63 QVLLNDWNGPFYNALARRDLAAFWQQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAG 142 (604)
T ss_pred eeeeHhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcc
Confidence 33445556667777777888888888888887777777777778889999999999999999999999999999988776
Q ss_pred --CCCCCccchhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhchh--------------hHHHHHHHHHHHHHH
Q 000711 855 --SKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQR--------------GVAILYAYMLLGLGF 918 (1338)
Q Consensus 855 --~~~~~~~~Rls~D~~~l~~~l~~~~~~~i~~~~~i~~~~~~l~~v~~~~--------------~~~~~~~~~~~~~~~ 918 (1338)
...+|||||+.+|+..+.+....+..+++.++++++.|+..|+-+++.. .+.+++.|++++...
T Consensus 143 ~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~ 222 (604)
T COG4178 143 GIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLL 222 (604)
T ss_pred cccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHH
Confidence 4558999999999999999999999999999888888877777554321 234456677777777
Q ss_pred HHHhcCccccccHHHHHhccchHHHHHHHHhhHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hHHH
Q 000711 919 LRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGIL---DDFV 995 (1338)
Q Consensus 919 ~~~~~~~~~~~~~~~~~le~~~r~~~~~~~~~~e~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 995 (1338)
..++++++..++.+.+++|+.||+.+.++++++|+|++|+||..|++.+..+|....++......+...+..+ ..++
T Consensus 223 ~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~ 302 (604)
T COG4178 223 THLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWL 302 (604)
T ss_pred HHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHH
Confidence 7789999999999999999999999999999999999999999999999999999999887666544333222 1122
Q ss_pred HhhhhhHHHHHHHHHHHHhhcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHhh
Q 000711 996 TKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDA 1075 (1338)
Q Consensus 996 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ri~~~~~~~~~ 1075 (1338)
+. .+.+..... ....|. .+.|.++. ....+.+....++++...+..++++.+.+.|+.++.+..+.
T Consensus 303 s~----v~P~li~ap--~~f~g~----i~~G~lmq----a~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~ 368 (604)
T COG4178 303 SV----VLPILIAAP--RYFSGQ----ITFGGLMQ----AVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEA 368 (604)
T ss_pred HH----HHHHHhccH--hhhcCc----ChHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 111111100 011111 12333332 33455666778899999999999999999999999877653
Q ss_pred cCCCCCCccCCc-cCCCCCCCCCCceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCC
Q 000711 1076 AQPGDDEISGSS-QHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVS 1154 (1338)
Q Consensus 1076 ~~~~~~~~~~~~-~~~wp~~~~~g~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~s 1154 (1338)
.+.+........ .-.-.... ...|.|+|++...|+..+.+++++|.|+|||++.|.|+||||||||+++|.|+||..+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~-~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~ 447 (604)
T COG4178 369 AQMDTEKPARTGRRIDFDDNA-DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGS 447 (604)
T ss_pred ccCcccccCcccccccccccc-cceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCC
Confidence 332111110000 00000111 4689999999999998899999999999999999999999999999999999999999
Q ss_pred ceEEcCCCCCccccCCcccEEEEcCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCC
Q 000711 1155 GSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVR 1234 (1338)
Q Consensus 1155 G~I~idg~dI~~~~~lr~~i~~VpQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~ 1234 (1338)
|+|.++.. .++.|+||+||+..||+||.|+||.+.+ ...|+++.++|.+|+
T Consensus 448 G~I~~P~~---------~~~lflpQ~PY~p~GtLre~l~YP~~~~--------------------~~~d~~l~~vL~~vg 498 (604)
T COG4178 448 GRISMPAD---------SALLFLPQRPYLPQGTLREALCYPNAAP--------------------DFSDAELVAVLHKVG 498 (604)
T ss_pred CceecCCC---------CceEEecCCCCCCCccHHHHHhCCCCCC--------------------CCChHHHHHHHHHcC
Confidence 99998833 4689999999999999999999997531 256889999999999
Q ss_pred chhhhhhhcccCcccCcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCC
Q 000711 1235 LSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRP 1312 (1338)
Q Consensus 1235 L~~~i~~~~~Gldt~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl 1312 (1338)
|.++++++ |-..+|...||+|||||||+||.+|+|||+++|||||||||.++|..+++++++ .++|+|.|+||.
T Consensus 499 L~~L~~rl----~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~ 574 (604)
T COG4178 499 LGDLAERL----DEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRP 574 (604)
T ss_pred cHHHHHHH----hccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccch
Confidence 99999886 445569999999999999999999999999999999999999999999999877 799999999999
Q ss_pred CCcccccceEEEecCCCCeEE
Q 000711 1313 ALIPFHSLELRLIDGEGNWEL 1333 (1338)
Q Consensus 1313 ~~i~~~d~~l~l~~g~g~~~~ 1333 (1338)
....||++.|++ .++|.|..
T Consensus 575 tl~~~h~~~l~l-~~~~~~~~ 594 (604)
T COG4178 575 TLWNFHSRQLEL-LDDAGGQN 594 (604)
T ss_pred hhHHHHhhheee-cccccccc
Confidence 999999999999 57777754
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-58 Score=584.52 Aligned_cols=531 Identities=17% Similarity=0.209 Sum_probs=391.5
Q ss_pred hHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 85 LKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTS 164 (1338)
Q Consensus 85 ~~~l~~l~~~~~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (1338)
|+.+++++++++++++ . ++..+++.++........+.+.+.+++.+.......+...+ .+.+++..++..+.
T Consensus 10 ~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~---~~~~~~~~l~~~~~ 81 (582)
T PRK11176 10 WQTFRRLWPTIAPFKA----G-LIVAGVALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWM---PLVVIGLMILRGIT 81 (582)
T ss_pred HHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHH---HHHHHHHHHHHHHH
Confidence 4445667777777654 2 34444555666666677788888888887754332222111 11122223334455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCC-CCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000711 165 KYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLC 243 (1338)
Q Consensus 165 ~~l~~~l~~~~R~~lt~~l~~~~~~~~~~~~~~~~d~~-~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~ 243 (1338)
.|+..++..+....+..+++.+++++....+.+++++. .++..+|+++|++.+.+.+...+..++..++..+.+.. ++
T Consensus 82 ~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~-~l 160 (582)
T PRK11176 82 SFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFI-MM 160 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 55665566665666888899999999999999988754 67899999999999887777766666665555444433 33
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHH
Q 000711 244 SYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRH 323 (1338)
Q Consensus 244 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~ 323 (1338)
++++|.+++++++.+++..++..++.+++.+...+.++..+++.....+...+.++||.|+.|+.+.+++++..++..+.
T Consensus 161 ~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~ 240 (582)
T PRK11176 161 FYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQ 240 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHH
Confidence 45688888777776666566666777888887777777778887778888889999999999999998888877776665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccc-cCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 324 MRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRR 402 (1338)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 402 (1338)
..+..+...+...+..++. ......+++ +++.. ..+..+.|...+ +..++..++.++..+...+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~---~~~~~~i~~----~g~~~~~~g~is~g~~~~------~~~~~~~~~~pl~~l~~~~~~ 307 (582)
T PRK11176 241 GMKMVSASSISDPIIQLIA---SLALAFVLY----AASFPSVMDTLTAGTITV------VFSSMIALMRPLKSLTNVNAQ 307 (582)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHcCCCCHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 5444333333233222221 111111111 11111 112235554322 223344566788888889999
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCcCCCCcEEEEeEEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCC
Q 000711 403 LNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNG 481 (1338)
Q Consensus 403 l~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~sG 481 (1338)
+++...+.+|+.++++.+++.+.... ......+.++++||+|.||++ +++|+|+||+|++||+++|+||||
T Consensus 308 ~~~~~~~~~ri~~~~~~~~~~~~~~~--------~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sG 379 (582)
T PRK11176 308 FQRGMAACQTLFAILDLEQEKDEGKR--------VIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSG 379 (582)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCCCc--------CCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCC
Confidence 99999999999998875433211000 001123469999999999864 789999999999999999999999
Q ss_pred CcHHHHHHHHcCCCCCCccEEEeCCCC------ccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHH
Q 000711 482 SGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELL 555 (1338)
Q Consensus 482 sGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l 555 (1338)
||||||+++|+|+++|++|+|.+||.+ .++++.|+||||+|++|++|++|||.++.+. ..+++++++++
T Consensus 380 sGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~-----~~~~~~i~~al 454 (582)
T PRK11176 380 SGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTE-----QYSREQIEEAA 454 (582)
T ss_pred CCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCC-----CCCHHHHHHHH
Confidence 999999999999999999999999975 2457889999999999999999999997532 25789999999
Q ss_pred HHcCCchHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEE
Q 000711 556 KNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCIT 630 (1338)
Q Consensus 556 ~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~ 630 (1338)
+.++++++++++|.+.++ ++|.+||||||||++||||++++|+++|||||||+||+++++.+++.+.+ .++|+|+
T Consensus 455 ~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~ 534 (582)
T PRK11176 455 RMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLV 534 (582)
T ss_pred HHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999976654 57889999999999999999999999999999999999999999999876 4799999
Q ss_pred EecChhhHhhcceEEEccCC
Q 000711 631 ISHRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 631 itH~~~~~~~~d~i~~l~~~ 650 (1338)
||||++.++.||+|++++++
T Consensus 535 VtHr~~~~~~~D~Ii~l~~g 554 (582)
T PRK11176 535 IAHRLSTIEKADEILVVEDG 554 (582)
T ss_pred EecchHHHHhCCEEEEEECC
Confidence 99999999999999999863
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-61 Score=595.05 Aligned_cols=197 Identities=24% Similarity=0.334 Sum_probs=166.5
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCC--CccEEEeCCCCc-------ccccc
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL--VSGHIAKPGVGS-------DLNKE 514 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~--~~G~i~~~~~~~-------~~~~~ 514 (1338)
.|+++|+++.|+ ++++|+|+||++++||+++|+||||||||||+|+|+|+++| ++|+|.++|.+. ..++.
T Consensus 5 ~l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (506)
T PRK13549 5 LLEMKNITKTFG-GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAG 83 (506)
T ss_pred eEEEeeeEEEeC-CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCC
Confidence 689999999995 46899999999999999999999999999999999999996 899999998641 12356
Q ss_pred EEEEecCCCCCC-CCHHHHhcCCCCCC--cccC-CCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHH
Q 000711 515 IFYVPQRPYTAV-GTLRDQLIYPLTSD--QEVE-PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1338)
Q Consensus 515 i~~v~Q~~~l~~-~tl~eni~~~~~~~--~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalA 590 (1338)
++||||+|.++. .|++||+.++.... .... ....+++.++++.+++.+..++.+ .+||||||||++||
T Consensus 84 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgGqkqrv~la 155 (506)
T PRK13549 84 IAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV--------GNLGLGQQQLVEIA 155 (506)
T ss_pred eEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch--------hhCCHHHHHHHHHH
Confidence 999999997765 59999998874321 0000 112346788899999977666654 68999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 591 Ral~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
|||+.+|+++||||||++||+.+...+++.+++ .|+|+|+|||+++.+. .||++++|++
T Consensus 156 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~ 218 (506)
T PRK13549 156 KALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRD 218 (506)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEEC
Confidence 999999999999999999999999999988754 4899999999999875 7999999986
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-58 Score=575.55 Aligned_cols=529 Identities=19% Similarity=0.223 Sum_probs=385.7
Q ss_pred HHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hcCh--hHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 88 LQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAF-LRRV--PLFFQLISENILLCFLLSTMHSTS 164 (1338)
Q Consensus 88 l~~l~~~~~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 164 (1338)
+++++++++|+++. +++.+++.++.....+..|.+.+.+++... .... ..+.. ++ ..+.+++..++..+.
T Consensus 4 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~ 76 (574)
T PRK11160 4 LLPFLKLYKRHWFM-----LSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNY-ML-PAAGVRGAAIGRTAG 76 (574)
T ss_pred hHHHHHHHhhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHH-Hh-HHHHHHHHHHHHHHH
Confidence 44677777777652 555666777777888899999999998764 2221 11111 11 111222223344556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCC-CCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000711 165 KYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLC 243 (1338)
Q Consensus 165 ~~l~~~l~~~~R~~lt~~l~~~~~~~~~~~~~~~~d~~-~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~ 243 (1338)
.|+..++..+.-..+..++|.+.|++....+..++++. .++..+|+++|++.+.+.+...+..++..++..+... .++
T Consensus 77 ~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~-~~l 155 (574)
T PRK11160 77 RYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLT-IGL 155 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 66666666666666889999999999999999998764 6799999999999998888777766666555543333 334
Q ss_pred HhchhhHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHH
Q 000711 244 SYASPKYVFWILAYVLGAGTMM-RNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTR 322 (1338)
Q Consensus 244 ~~~~~~l~~~~l~~~~~~~~~~-~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~ 322 (1338)
++++|.+++++++.+++..+++ .++.+...+...+.++..+++.....+...++++||.|+.|+.+.+++.+..++..+
T Consensus 156 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~ 235 (574)
T PRK11160 156 SFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLA 235 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 5678888887765555444333 444566666677777888888888888888999999999999999877777666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 323 HMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRR 402 (1338)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 402 (1338)
...+..+.. +.............+..+++ +++....+..+.|.. ++.+.+. ....+.++..+...+..
T Consensus 236 ~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~----~g~~~~~g~~t~g~l--~a~~~~~---~~~~~~~~~~l~~~~~~ 303 (574)
T PRK11160 236 AQRRQANLT---GLSQALMILANGLTVVLMLW----LAAGGVGGNAQPGAL--IALFVFA---ALAAFEALMPVAGAFQH 303 (574)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHH----HHHHHhccccchhHH--HHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 444333222 22222211111111111222 222221222344432 2221111 11223455556667778
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCcCCCCcEEEEeEEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCC
Q 000711 403 LNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNG 481 (1338)
Q Consensus 403 l~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~sG 481 (1338)
+++..++.+|+.++++.+++.+..... . .....+.++|+||+|.||++ +++|+|+||++++||+++|+||||
T Consensus 304 ~~~~~~s~~ri~~ll~~~~~~~~~~~~-~------~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sG 376 (574)
T PRK11160 304 LGQVIASARRINEITEQKPEVTFPTTS-T------AAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTG 376 (574)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCccc-C------CCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCC
Confidence 889999999999999865542211000 0 01123579999999999864 689999999999999999999999
Q ss_pred CcHHHHHHHHcCCCCCCccEEEeCCCC------ccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHH
Q 000711 482 SGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELL 555 (1338)
Q Consensus 482 sGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l 555 (1338)
||||||+++|+|+|+|++|+|.+||.+ .+++++|+||||+|++|++|++|||.++.+ ..+++++.+++
T Consensus 377 sGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~------~~~~~~i~~al 450 (574)
T PRK11160 377 CGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAP------NASDEALIEVL 450 (574)
T ss_pred CCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCC------ccCHHHHHHHH
Confidence 999999999999999999999999975 246788999999999999999999999754 25788999999
Q ss_pred HHcCCchHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEE
Q 000711 556 KNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCIT 630 (1338)
Q Consensus 556 ~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~ 630 (1338)
+.+++++++++ |.+.++ +.|.+||||||||++||||++++|++++||||||+||+++++.+++.+.+ .++|+|+
T Consensus 451 ~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tvii 529 (574)
T PRK11160 451 QQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLM 529 (574)
T ss_pred HHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999 987665 46889999999999999999999999999999999999999999999875 4899999
Q ss_pred EecChhhHhhcceEEEccCC
Q 000711 631 ISHRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 631 itH~~~~~~~~d~i~~l~~~ 650 (1338)
||||+++++.+|+|++|+++
T Consensus 530 itHr~~~~~~~d~i~~l~~G 549 (574)
T PRK11160 530 ITHRLTGLEQFDRICVMDNG 549 (574)
T ss_pred EecChhHHHhCCEEEEEeCC
Confidence 99999999999999999863
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-59 Score=599.77 Aligned_cols=455 Identities=20% Similarity=0.222 Sum_probs=313.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccc-ccchhhcccCCCCCCccchhHHHHHHHHHHHHHHHHHhhHhH-------HHHHH
Q 000711 820 HLTARLALGWRIRMTQHLLKSYLRK-NSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPS-------VDILW 891 (1338)
Q Consensus 820 ~~~~~~~~~~r~~l~~~l~~~~l~~-~~ff~~~~~~~~~~~~~~Rls~D~~~l~~~l~~~~~~~i~~~-------~~i~~ 891 (1338)
++......+...+++.+++++.++. ..||+. ...+++.+|+++|++.+...+...+..++..+ +.+++
T Consensus 223 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~----~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~ 298 (711)
T TIGR00958 223 GSFNYTMARINLRIREDLFRSLLRQDLGFFDE----NKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLW 298 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC----CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444445555556655554 467763 24567899999999999877665444333322 22344
Q ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHHhcCccccccHHHHHhccchHHHHHHHHhhHHHhhhcCChHHHHHHHHHHH
Q 000711 892 FTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRF 971 (1338)
Q Consensus 892 ~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~~~~~~e~i~~~~~~~~e~~~~~~~~ 971 (1338)
++|.++++.. +..++.........+.......+.++..+.......+...+.++|+.|+.++.+.+.+++..
T Consensus 299 ~s~~l~l~~l--------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~ 370 (711)
T TIGR00958 299 LSPRLTMVTL--------INLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEAL 370 (711)
T ss_pred HhHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHH
Confidence 5666544321 11111111222222333444455555555555555666678899999999988887777776
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHhhhhhHHHHHHHHHHHHhhcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 972 RELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILE 1051 (1338)
Q Consensus 972 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~ 1051 (1338)
++..+...+..............+. .+...+.++++....... ..+.|.+..++. +..+...++..+..
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~il~~g~~lv~~g--~it~G~lva~~~----~~~~l~~~l~~l~~ 439 (711)
T TIGR00958 371 EETLQLNKRKALAYAGYLWTTSVLG-----MLIQVLVLYYGGQLVLTG--KVSSGNLVSFLL----YQEQLGEAVRVLSY 439 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcC--CCCHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 6665544333222221111111111 111111122221110000 013444433332 23455567778888
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHhhcCCCCCCccCCccCCCCCCCCCCceEEeeeEEeCCC--ccccccccceEEeCCCEE
Q 000711 1052 LHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS--QKLLARQLTFEIVPGKSL 1129 (1338)
Q Consensus 1052 ~~~~~~~~~~a~~Ri~~~~~~~~~~~~~~~~~~~~~~~~wp~~~~~g~I~f~nV~f~yp~--~~~vL~~lsf~I~~Gekv 1129 (1338)
....+.+..++.+|+.++.+.+++.++. .. ...++ ..|.|+|+||+|.||+ ++++|+|+||+|+|||++
T Consensus 440 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~-----~~-~~~~~---~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~v 510 (711)
T TIGR00958 440 VYSGMMQAVGASEKVFEYLDRKPNIPLT-----GT-LAPLN---LEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVV 510 (711)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCC-----CC-CCCCC---CCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEE
Confidence 8888899999999999997654322110 00 01111 2578999999999986 358999999999999999
Q ss_pred EEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEEEEcCCCCCCCCCHHHHhcCCCchHHHHHHHHh
Q 000711 1130 LVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALK 1207 (1338)
Q Consensus 1130 aIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~~VpQdP~LF~GTIReNL~~p~~~~~~~~~a~~ 1207 (1338)
|||||||||||||+++|+|+|+|++|+|.+||+|++++ ..+|++|+||||||++|+|||||||.|+.+.
T Consensus 511 aIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~--------- 581 (711)
T TIGR00958 511 ALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTD--------- 581 (711)
T ss_pred EEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCC---------
Confidence 99999999999999999999999999999999999987 4567789999999999999999999986431
Q ss_pred hhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC-cccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCC
Q 000711 1208 LHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNAT 1286 (1338)
Q Consensus 1208 ~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaL 1286 (1338)
..|++++++++.++++++++++|+||||.+ ++|.+||||||||||||||++|+|+|||||||||+|
T Consensus 582 -------------~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaL 648 (711)
T TIGR00958 582 -------------TPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSAL 648 (711)
T ss_pred -------------CCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEcccccc
Confidence 124556677777888888889999999998 578999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1287 SVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1287 D~~te~~i~~~~~~~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
|.++|+.+++.....++|+|+||||+++++.+|++++|++|+
T Consensus 649 D~~te~~i~~~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ 690 (711)
T TIGR00958 649 DAECEQLLQESRSRASRTVLLIAHRLSTVERADQILVLKKGS 690 (711)
T ss_pred CHHHHHHHHHhhccCCCeEEEEeccHHHHHhCCEEEEEECCE
Confidence 999999998843346899999999999999999999997654
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-59 Score=589.46 Aligned_cols=467 Identities=18% Similarity=0.217 Sum_probs=310.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-ccchhhcccCCCCCCccchhHHHHHHHHHHHHHHHHHhhHh----
Q 000711 811 SSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRK-NSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKP---- 885 (1338)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~~-~~ff~~~~~~~~~~~~~~Rls~D~~~l~~~l~~~~~~~i~~---- 885 (1338)
..+..+...++..+...++..++..+++++.++. ..||+. ...++..+|+++|++.+...+...+..++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~----~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~ 151 (588)
T PRK11174 76 RALLAWLRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQG----KPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVP 151 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhcc----CCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555556666666666654 356652 2346788999999999887665433333222
Q ss_pred ---HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhcCccccccHHHHHhccchHHHHHHHHhhHHHhhhcCChHH
Q 000711 886 ---SVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAR 962 (1338)
Q Consensus 886 ---~~~i~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~~~~~~e~i~~~~~~~~ 962 (1338)
++.+++++|.++++.. + +.+.+++. .....+.......+.++..+.......+...+.++|+.|+.+..
T Consensus 152 ~~~~~~l~~~~~~l~l~~l----~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~ 223 (588)
T PRK11174 152 LLILIAVFPINWAAGLILL----G-TAPLIPLF---MALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEA 223 (588)
T ss_pred HHHHHHHHHHHHHHHHHHH----H-HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHH
Confidence 2233456777755421 1 11111111 11111112222233333333344444555667899999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhhhHHHHHHHHHHHHhhcccchhhhchHHH----HHHHHHH-HH
Q 000711 963 EKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGEL----AHALRFL-AS 1037 (1338)
Q Consensus 963 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l----~~~l~~~-~~ 1037 (1338)
+.+.+++..++..+......+..........++...... .+..+.+....+. .+.|.+ .....+. ..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~----~t~G~l~~~~~~~~~~~~~~ 295 (588)
T PRK11174 224 ETESIRSASEDFRQRTMEVLRMAFLSSAVLEFFASISIA----LVAVYFGFSYLGE----LNFGHYGTGVTLFAGFFVLI 295 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhcc----cccccccccchHHHHHHHHH
Confidence 887777766666654443333322222222111111000 0001111111111 112221 1111111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHhhcCCCCCCccCCccCCCCCCCCCCceEEeeeEEeCCCcccccc
Q 000711 1038 VVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLAR 1117 (1338)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~~~~~~~~a~~Ri~~~~~~~~~~~~~~~~~~~~~~~~wp~~~~~g~I~f~nV~f~yp~~~~vL~ 1117 (1338)
+....+.++..+......+.+...+.+|+.++.+.+++.+. ....+ -|. ...+.|+|+||+|+|++++++|+
T Consensus 296 l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~-----~~~~~--~~~-~~~~~i~~~~vsf~~~~~~~vL~ 367 (588)
T PRK11174 296 LAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQ-----QGEKE--LAS-NDPVTIEAEDLEILSPDGKTLAG 367 (588)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC-----CCccc--cCC-CCCceEEEEeeEEeccCCCeeee
Confidence 33445667788888888888889999999999765432111 00000 010 01357999999987666678999
Q ss_pred ccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEEEEcCCCCCCCCCHHHHhcCC
Q 000711 1118 QLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYP 1195 (1338)
Q Consensus 1118 ~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~~VpQdP~LF~GTIReNL~~p 1195 (1338)
|+||+|+|||++|||||||||||||+++|.|+| |++|+|.+||+|++++ ..+|++|+||||||+||+|||||||.|+
T Consensus 368 ~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g 446 (588)
T PRK11174 368 PLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLG 446 (588)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcC
Confidence 999999999999999999999999999999999 8999999999999988 4567789999999999999999999885
Q ss_pred CchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC-cccCCCChhHHHHHHHHHHhhcCC
Q 000711 1196 LSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKP 1274 (1338)
Q Consensus 1196 ~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p 1274 (1338)
.+ +..|++++++++.++++++++++|+||||.+ ++|.+||||||||||||||++++|
T Consensus 447 ~~----------------------~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~ 504 (588)
T PRK11174 447 NP----------------------DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPC 504 (588)
T ss_pred CC----------------------CCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCC
Confidence 32 1234556666777777788888999999998 578999999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1275 KFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1275 ~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
+||||||||||||.++|+.+++.+++ .++|+|+||||+++++.+|+++++++|+
T Consensus 505 ~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~ 560 (588)
T PRK11174 505 QLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQ 560 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCe
Confidence 99999999999999999999887654 5899999999999999999999997763
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-60 Score=590.36 Aligned_cols=197 Identities=24% Similarity=0.276 Sum_probs=166.4
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc-c------ccccEE
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-D------LNKEIF 516 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~-~------~~~~i~ 516 (1338)
.++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. . .++.++
T Consensus 5 ~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 83 (510)
T PRK09700 5 YISMAGIGKSFG-PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIG 83 (510)
T ss_pred eEEEeeeEEEcC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeE
Confidence 589999999995 46899999999999999999999999999999999999999999999998641 1 234699
Q ss_pred EEecCCCCCC-CCHHHHhcCCCCCCc---cc---C-CCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHH
Q 000711 517 YVPQRPYTAV-GTLRDQLIYPLTSDQ---EV---E-PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1338)
Q Consensus 517 ~v~Q~~~l~~-~tl~eni~~~~~~~~---~~---~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRla 588 (1338)
|+||++.++. .|++||+.++..... .. . ....+++.++++.+++.+..++.+ .+||||||||++
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LSgG~~qrv~ 155 (510)
T PRK09700 84 IIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV--------ANLSISHKQMLE 155 (510)
T ss_pred EEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch--------hhCCHHHHHHHH
Confidence 9999997765 599999987642110 00 0 012346778899999987766655 689999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 589 lARal~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
|||||+.+|+++||||||++||+.+...+++.+++ .|+|+|+|||+++.+. .||++++|++
T Consensus 156 ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~ 220 (510)
T PRK09700 156 IAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKD 220 (510)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999988754 4899999999999875 7999999986
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-58 Score=576.19 Aligned_cols=512 Identities=22% Similarity=0.300 Sum_probs=381.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTR 186 (1338)
Q Consensus 107 l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~R~~lt~~l~~~ 186 (1338)
+...+++.++...++...|.+.+.+++.+. .+.......+...+++.++..++.....|+...+. ..+...++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~~lr~~ 90 (567)
T COG1132 16 LLLAILLLLLSALLSLLLPLLIGRIIDALL-ADLGELLELLLLLLLLALLGGVLRALQSYLGSRLG----QKIVADLRRD 90 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 555566667777888899999999999888 33344344333333333333334444555555555 4588899999
Q ss_pred HhcccccccccccCCC-CCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Q 000711 187 YFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMM 265 (1338)
Q Consensus 187 ~~~~~~~~~~~~~d~~-~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~l~~~~~~~~~~ 265 (1338)
++++..+.+++++++. .++..+|+++|++.+...+......+...++..+. ...+++..+|.+++++++.+++..++.
T Consensus 91 ~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~l~~~~~~~~~~~~~ 169 (567)
T COG1132 91 LFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIG-SLVLLFSLSWRLALILLLILPLLALVL 169 (567)
T ss_pred HHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876 57999999999999877766653333323332222 223445668888888877777777777
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 266 RNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYL 345 (1338)
Q Consensus 266 ~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (1338)
.+++++..+...+.++..++......+..++.+.|+.|+.|+.+.+++.+..++..+...+. ..+.+...+......
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 246 (567)
T COG1132 170 SLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRA---SRLEALLAPLMLLLS 246 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 77776667777777777788888788888899999999999999765555554444432221 222222222221111
Q ss_pred HHHHHHHHHHHhHhcccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 000711 346 GATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSI 425 (1338)
Q Consensus 346 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~ri~~~~~~~~~~~~ 425 (1338)
......++++..+. ...+..+.|.. .+ +..++..++.++..+...+..+++...+++|++++++.+++...
T Consensus 247 ~~~~~~~~~~~~~~---~~~~~~~~g~~--~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 317 (567)
T COG1132 247 SLGTVLVLALGGFL---VLSGSLTVGAL--AA----FILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVED 317 (567)
T ss_pred HHHHHHHHHHHHHH---HHcCCCCHhHH--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC
Confidence 22222222211111 01111244432 22 33455666678888999999999999999999999987554332
Q ss_pred cCCCCCCCCCCCCcCCCCcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeC
Q 000711 426 EDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKP 505 (1338)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~ 505 (1338)
.... .....+.|+|+||+|.|++++++|+|+||++++||+++|+||||||||||+++|+|+|+|++|+|.+|
T Consensus 318 ~~~~--------~~~~~~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~id 389 (567)
T COG1132 318 PPDP--------LKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILID 389 (567)
T ss_pred CCCC--------CCCCCCeEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEEC
Confidence 1110 11124679999999999877899999999999999999999999999999999999999999999999
Q ss_pred CCC------ccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccc---cCC
Q 000711 506 GVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWG 576 (1338)
Q Consensus 506 ~~~------~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g 576 (1338)
|.+ .++|++|+||||+|++|++||+|||.|+.+. .++++++++++.+++++++.++|.+.++ +.|
T Consensus 390 g~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~------at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G 463 (567)
T COG1132 390 GIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPD------ATDEEIEEALKLANAHEFIANLPDGYDTIVGERG 463 (567)
T ss_pred CEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCC------CCHHHHHHHHHHhChHHHHHhCcccccceecCCC
Confidence 976 3578999999999999999999999999753 6889999999999999999999876554 468
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhHhhcceEEEccCC
Q 000711 577 DELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 577 ~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~~~~d~i~~l~~~ 650 (1338)
.+||||||||++||||++++|++++||||||+||+++|+.+++.+++ .++|+|+|+||+++++.||+|++|+++
T Consensus 464 ~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G 539 (567)
T COG1132 464 VNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNG 539 (567)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECC
Confidence 89999999999999999999999999999999999999999999864 478999999999999999999999974
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-58 Score=579.11 Aligned_cols=526 Identities=19% Similarity=0.228 Sum_probs=397.3
Q ss_pred HHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 90 VLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITG 169 (1338)
Q Consensus 90 ~l~~~~~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 169 (1338)
++++.++++++ .++..+++.++...+.+..+.+.+.+++......... .+....++.+++.++..+..|+..
T Consensus 4 ~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~ 75 (571)
T TIGR02203 4 RLWSYVRPYKA-----GLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRS---VLWWVPLVVIGLAVLRGICSFVST 75 (571)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchh---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555443 2556666777777788888888888888766543222 122222222333344556677777
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccCCC-CCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhchh
Q 000711 170 TLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASP 248 (1338)
Q Consensus 170 ~l~~~~R~~lt~~l~~~~~~~~~~~~~~~~d~~-~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~ 248 (1338)
++..+....+...+++.++++....+.+++++. .++..+|+++|++.+.+.+...+..++..++..+.+.. ++++++|
T Consensus 76 ~~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~ 154 (571)
T TIGR02203 76 YLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFI-VLLYYSW 154 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhH
Confidence 777777777999999999999999999888764 56899999999999888777776666665555444433 3445788
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHH
Q 000711 249 KYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVL 328 (1338)
Q Consensus 249 ~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~ 328 (1338)
.+++++++..++..++..++.++..+...+.++.++++.....+..++.++|+.+++|+.+.+++.+.+++..+...+..
T Consensus 155 ~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (571)
T TIGR02203 155 QLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMT 234 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777777777677778888888888888888888888999999999999999999999888887777666544443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 329 HDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSG 408 (1338)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~ 408 (1338)
+.......+..++.. +...+.+++.....+.| ..+.|... + +..++..++.++..+...+..+++...
T Consensus 235 ~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~g-----~lt~g~l~--a----~~~~~~~~~~pl~~l~~~~~~~~~~~~ 302 (571)
T TIGR02203 235 SAGSISSPITQLIAS-LALAVVLFIALFQAQAG-----SLTAGDFT--A----FITAMIALIRPLKSLTNVNAPMQRGLA 302 (571)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC-----CCCHhHHH--H----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333322222211 11111111111111223 23555432 2 223455666788889999999999999
Q ss_pred HHHHHHHHHHhhhhccccCCCCCCCCCCCCcCCCCcEEEEeEEEEcCC-CCeeeeeeeEEEeCCCEEEEEcCCCCcHHHH
Q 000711 409 YADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSL 487 (1338)
Q Consensus 409 ~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~-~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTL 487 (1338)
+.+|+.++++.+++.+.... . .....+.++++||+|+|++ ++++|+|+||++++||+++|+|+||||||||
T Consensus 303 ~~~ri~~~l~~~~~~~~~~~--~------~~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTL 374 (571)
T TIGR02203 303 AAESLFTLLDSPPEKDTGTR--A------IERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTL 374 (571)
T ss_pred HHHHHHHHHcCCCCCCCCCC--C------CCCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHH
Confidence 99999999875443221100 0 0012356999999999975 4689999999999999999999999999999
Q ss_pred HHHHcCCCCCCccEEEeCCCC------ccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCc
Q 000711 488 FRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE 561 (1338)
Q Consensus 488 l~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 561 (1338)
+++|+|+|+|++|+|.+||.+ .+++++++||||+|++|+||++|||.++.+. +.+++++.++++.++++
T Consensus 375 l~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~-----~~~~~~i~~~l~~~~l~ 449 (571)
T TIGR02203 375 VNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTE-----QADRAEIERALAAAYAQ 449 (571)
T ss_pred HHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCC-----CCCHHHHHHHHHHcChH
Confidence 999999999999999999975 3467789999999999999999999998531 25788999999999999
Q ss_pred hHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChh
Q 000711 562 YLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPA 636 (1338)
Q Consensus 562 ~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~ 636 (1338)
++++++|.+.++ ++|.+||||||||++||||++++|++++||||||+||+++++.+++.+++ .++|+|+||||++
T Consensus 450 ~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~ 529 (571)
T TIGR02203 450 DFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLS 529 (571)
T ss_pred HHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhH
Confidence 999999876544 57889999999999999999999999999999999999999999998876 4899999999999
Q ss_pred hHhhcceEEEccC
Q 000711 637 LVAFHDVVLSLDG 649 (1338)
Q Consensus 637 ~~~~~d~i~~l~~ 649 (1338)
.++.||+|+++++
T Consensus 530 ~~~~~D~ii~l~~ 542 (571)
T TIGR02203 530 TIEKADRIVVMDD 542 (571)
T ss_pred HHHhCCEEEEEeC
Confidence 9999999999986
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-58 Score=578.54 Aligned_cols=530 Identities=17% Similarity=0.173 Sum_probs=385.3
Q ss_pred ChHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc-ChhHHHHHHHHHHHHHHHHHHHHH
Q 000711 84 GLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLR-RVPLFFQLISENILLCFLLSTMHS 162 (1338)
Q Consensus 84 ~~~~l~~l~~~~~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 162 (1338)
-|+.+++++.+..++++ . ++..+++.++.+.+.+..|.+.+.++|.+... +.+. ..++.++++.++..++..
T Consensus 7 ~~~~~~~l~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 79 (592)
T PRK10790 7 LWPTLKRLLAYGSPWRK----P-LGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPL--GLVAGLAAAYVGLQLLAA 79 (592)
T ss_pred hHHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch--hHHHHHHHHHHHHHHHHH
Confidence 34455666666666544 2 55566667777888888999999999987642 2221 111112222222333455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCC-CCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000711 163 TSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWR 241 (1338)
Q Consensus 163 ~~~~l~~~l~~~~R~~lt~~l~~~~~~~~~~~~~~~~d~~-~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~ 241 (1338)
+..|+..++..+....+..+++.+++++....|.+++++. .++..+|+++|++.+.+.+...+..++..++..+.+. .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~-~ 158 (592)
T PRK10790 80 GLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAML-V 158 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 6677777777777777899999999999999999998765 6689999999999988877776666655554333332 2
Q ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHH
Q 000711 242 LCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALT 321 (1338)
Q Consensus 242 l~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~ 321 (1338)
++++++|.+++++++.+++..++..+..+...+...+.++..++......+...+.++||.|+.|+.+.+++.+..++..
T Consensus 159 ~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~ 238 (592)
T PRK10790 159 AMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHY 238 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 34456787777666555544444444555555555555566666777777888899999999999999877776665544
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhcccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 322 RHMRVVLHDH-WWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISS 400 (1338)
Q Consensus 322 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 400 (1338)
+...+..+.. .....+..++.... .++++++ .|....+..+.|.. ++ +..+...+..++..+...+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~g~is~g~l--~a----~~~~~~~~~~pl~~l~~~~ 305 (592)
T PRK10790 239 MARMQTLRLDGFLLRPLLSLFSALI--LCGLLML-----FGFSASGTIEVGVL--YA----FISYLGRLNEPLIELTTQQ 305 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-----HHHHHCCCcCHHHH--HH----HHHHHHHHHHHHHHHHHHH
Confidence 4322221111 11111111111111 0111111 11111223355432 22 2234455667888888889
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCcCCCCcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCC
Q 000711 401 RRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPN 480 (1338)
Q Consensus 401 ~~l~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~s 480 (1338)
..+++...+.+|+.++++.+++... .. . .....+.++|+||+|.||+++++|+|+||++++||+++|+|+|
T Consensus 306 ~~~~~~~~s~~ri~~~l~~~~~~~~-~~--~------~~~~~~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~S 376 (592)
T PRK10790 306 SMLQQAVVAGERVFELMDGPRQQYG-ND--D------RPLQSGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHT 376 (592)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCC-CC--c------cCCCCCeEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCC
Confidence 9999999999999999875432110 00 0 0112356999999999987678999999999999999999999
Q ss_pred CCcHHHHHHHHcCCCCCCccEEEeCCCC------ccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHH
Q 000711 481 GSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVEL 554 (1338)
Q Consensus 481 GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~ 554 (1338)
|||||||+++|+|+|+|++|+|.+||.+ ..++++|+||||+|++|++|++|||.++. +.+++++.++
T Consensus 377 GsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-------~~~d~~i~~a 449 (592)
T PRK10790 377 GSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-------DISEEQVWQA 449 (592)
T ss_pred CCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-------CCCHHHHHHH
Confidence 9999999999999999999999999975 34678999999999999999999999974 1478899999
Q ss_pred HHHcCCchHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEE
Q 000711 555 LKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCI 629 (1338)
Q Consensus 555 l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i 629 (1338)
++.+|++++++++|.+.++ +.|.+||||||||++|||||+++|++++||||||+||+++++.+++.+++ .++|+|
T Consensus 450 ~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvI 529 (592)
T PRK10790 450 LETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLV 529 (592)
T ss_pred HHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEE
Confidence 9999999999999976554 46889999999999999999999999999999999999999999999876 479999
Q ss_pred EEecChhhHhhcceEEEccCC
Q 000711 630 TISHRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 630 ~itH~~~~~~~~d~i~~l~~~ 650 (1338)
+||||++.++.+|+|++|+++
T Consensus 530 ivtHr~~~l~~~D~ii~l~~G 550 (592)
T PRK10790 530 VIAHRLSTIVEADTILVLHRG 550 (592)
T ss_pred EEecchHHHHhCCEEEEEECC
Confidence 999999999999999999863
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-60 Score=599.34 Aligned_cols=200 Identities=23% Similarity=0.303 Sum_probs=164.5
Q ss_pred CCcEEEEeEEEEcCC---CCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC----------
Q 000711 442 ANYIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------- 508 (1338)
Q Consensus 442 ~~~i~~~~v~~~~~~---~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~---------- 508 (1338)
...|+++|+++.|++ +.++++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~ 89 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE 89 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccc
Confidence 347999999999863 2479999999999999999999999999999999999999999999987731
Q ss_pred ------c---cc-cccEEEEecCC--CCC-CCCHHHHhcCCCCCC-cccCCCCHHHHHHHHHHcCCc---hHHhcCCCCc
Q 000711 509 ------S---DL-NKEIFYVPQRP--YTA-VGTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLE---YLLDRYPPEK 571 (1338)
Q Consensus 509 ------~---~~-~~~i~~v~Q~~--~l~-~~tl~eni~~~~~~~-~~~~~~~~~~~~~~l~~~~l~---~~~~~~~~~~ 571 (1338)
. .+ +++|+||+|+| .++ ..|++||+.++.... ........+++.++++.+|+. +..++.+
T Consensus 90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~--- 166 (623)
T PRK10261 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYP--- 166 (623)
T ss_pred cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCC---
Confidence 0 11 24799999998 454 469999998753210 000111235678899999995 3456655
Q ss_pred cccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhH-hhcceEEE
Q 000711 572 EINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLS 646 (1338)
Q Consensus 572 ~~~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~-~~~d~i~~ 646 (1338)
.+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.+++ .|+|+|+|||+++.+ ..||+|++
T Consensus 167 -----~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~v 241 (623)
T PRK10261 167 -----HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLV 241 (623)
T ss_pred -----ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence 68999999999999999999999999999999999999998887754 389999999999987 57999999
Q ss_pred ccC
Q 000711 647 LDG 649 (1338)
Q Consensus 647 l~~ 649 (1338)
|++
T Consensus 242 l~~ 244 (623)
T PRK10261 242 MYQ 244 (623)
T ss_pred eeC
Confidence 986
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-59 Score=584.67 Aligned_cols=445 Identities=23% Similarity=0.267 Sum_probs=297.1
Q ss_pred HHHHHHHHHHHHHHHccc-ccchhhcccCCCCCCccchhHHHHHHHHHHHHHHHHHhh-------HhHHHHHHHHHHHHH
Q 000711 827 LGWRIRMTQHLLKSYLRK-NSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMV-------KPSVDILWFTWRMKA 898 (1338)
Q Consensus 827 ~~~r~~l~~~l~~~~l~~-~~ff~~~~~~~~~~~~~~Rls~D~~~l~~~l~~~~~~~i-------~~~~~i~~~~~~l~~ 898 (1338)
.+....++.++++..++- ..||+..+ .++..+|+++|++.+...+......+. ..++.+++.+|++++
T Consensus 81 ~~~~~~lr~~~~~~l~~~~~~~~~~~~----~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 156 (567)
T COG1132 81 QKIVADLRRDLFEKLLRLPLSFFDKAK----SGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLAL 156 (567)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHhCcCC----cchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 333444444444444443 36666433 567899999999998877665422222 122233445676665
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHhcCccccccHHHHHhccchHHHHHHHHhhHHHhhhcCChHHHHHHHHHHHHHHHHHH
Q 000711 899 LTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHS 978 (1338)
Q Consensus 899 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~~~~~~e~i~~~~~~~~e~~~~~~~~~~~~~~~ 978 (1338)
+... +.+++.+...++.. +........++..+.......+...+.+.++.|+.+..+.+.++....+..+..
T Consensus 157 ~~~~-----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~ 228 (567)
T COG1132 157 ILLL-----ILPLLALVLSLLAR---KSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRAN 228 (567)
T ss_pred HHHH-----HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 4311 11111111111111 111222222222233333334444567788999887776555555554444433
Q ss_pred HHHHHHHHHhhhhhHHHHhhhhhHHHHHHHHHHHHhhcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 979 LLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVE 1058 (1338)
Q Consensus 979 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1058 (1338)
...............++. .+.....++++........ .+.|.+...+. +......++..+......+..
T Consensus 229 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~----~~~~~~~~~~~l~~~~~~~~~ 297 (567)
T COG1132 229 LRASRLEALLAPLMLLLS-----SLGTVLVLALGGFLVLSGS--LTVGALAAFIL----YLLRLLTPILQLGEVVSLLQR 297 (567)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcCC--CCHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 222222222211111111 1111222222211100000 12344333332 334455677778888888888
Q ss_pred HHhHHhHHHHHHHHHhhcCCCCCCccCCccCCCCCCCCCCceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCc
Q 000711 1059 LSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSG 1138 (1338)
Q Consensus 1059 ~~~a~~Ri~~~~~~~~~~~~~~~~~~~~~~~~wp~~~~~g~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsG 1138 (1338)
...+.+|++++.+.+++..++.. . .....|+|+|+||+|+||+++++|+|+||+|+|||++|||||||||
T Consensus 298 ~~~a~~ri~~~l~~~~~~~~~~~-------~---~~~~~~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsG 367 (567)
T COG1132 298 ASAAAERLFELLDEEPEVEDPPD-------P---LKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSG 367 (567)
T ss_pred HHHHHHHHHHHHcCCccccCCCC-------C---CCCCCCeEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCC
Confidence 88999999999865332211100 0 1112578999999999998889999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEEEEcCCCCCCCCCHHHHhcCCCc--hHHHHHHHHhhhcCCcc
Q 000711 1139 KSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLS--REEAELRALKLHGKGEK 1214 (1338)
Q Consensus 1139 KSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~~VpQdP~LF~GTIReNL~~p~~--~~~~~~~a~~~a~~~~~ 1214 (1338)
|||++++|+|||||++|+|.+||+||+++ +.+|++|++|||||+||+|||||||.|+.+ ++|++++||+.++
T Consensus 368 KSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~---- 443 (567)
T COG1132 368 KSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLAN---- 443 (567)
T ss_pred HHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhC----
Confidence 99999999999999999999999999998 567889999999999999999999998643 4555556655554
Q ss_pred ccccccCchHHHHHHHhhCCchhhhhhhcccCcccCc-ccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHH
Q 000711 1215 LVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLN-WEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQ 1293 (1338)
Q Consensus 1215 ~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~-~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~ 1293 (1338)
++++++++|+||||.++ .|.+||||||||||||||++|+|||||||||||+||.++|+.
T Consensus 444 --------------------~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~ 503 (567)
T COG1132 444 --------------------AHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEAL 503 (567)
T ss_pred --------------------hHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHH
Confidence 44556667889999985 789999999999999999999999999999999999999999
Q ss_pred HHHHHHh--cCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1294 LYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1294 i~~~~~~--~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
+++.++. .++|+|+||||+++++.+|+++++++|+
T Consensus 504 I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~ 540 (567)
T COG1132 504 IQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGR 540 (567)
T ss_pred HHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCE
Confidence 9988753 5889999999999999999999998775
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-60 Score=591.57 Aligned_cols=198 Identities=26% Similarity=0.378 Sum_probs=163.0
Q ss_pred cEEEEeEEEEcCC---CCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCC-----CccEEEeCCCCc-c----
Q 000711 444 YIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS-D---- 510 (1338)
Q Consensus 444 ~i~~~~v~~~~~~---~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~-----~~G~i~~~~~~~-~---- 510 (1338)
.++++|+++.|++ ++++|+|+||++++||+++|+||||||||||+|+|+|+++| ++|+|.++|.+. .
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 6899999999964 25899999999999999999999999999999999999987 799999998641 1
Q ss_pred ----cc-ccEEEEecCCC--CC-CCCHHHHhcCCCCC-CcccCCCCHHHHHHHHHHcCCch---HHhcCCCCccccCCCC
Q 000711 511 ----LN-KEIFYVPQRPY--TA-VGTLRDQLIYPLTS-DQEVEPLTHGGMVELLKNVDLEY---LLDRYPPEKEINWGDE 578 (1338)
Q Consensus 511 ----~~-~~i~~v~Q~~~--l~-~~tl~eni~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~~~~g~~ 578 (1338)
.+ ++++|+||+|. ++ ..|+++|+.++... .........+++.++++.+++.+ ..++.+ .+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~--------~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYP--------HQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCC--------cc
Confidence 12 47999999984 33 35899998643210 00001112456788999999975 345555 68
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 579 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 579 LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++ .|+|+|+|||+++.+. .||+|++|++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~ 232 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQN 232 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEEC
Confidence 999999999999999999999999999999999999999988764 3899999999999775 7999999986
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-60 Score=585.95 Aligned_cols=197 Identities=25% Similarity=0.356 Sum_probs=166.5
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc------c-ccccEE
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------D-LNKEIF 516 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~-~~~~i~ 516 (1338)
.|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. . .++.++
T Consensus 4 ~i~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 82 (501)
T PRK10762 4 LLQLKGIDKAFP-GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIG 82 (501)
T ss_pred eEEEeeeEEEeC-CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 589999999995 46899999999999999999999999999999999999999999999998541 1 235799
Q ss_pred EEecCCCCCC-CCHHHHhcCCCCCCcc---c-CCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHH
Q 000711 517 YVPQRPYTAV-GTLRDQLIYPLTSDQE---V-EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1338)
Q Consensus 517 ~v~Q~~~l~~-~tl~eni~~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalAR 591 (1338)
|+||++.++. .|++||+.++...... . .....+++.++++.+++.+..++.+ .+||||||||++|||
T Consensus 83 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~la~ 154 (501)
T PRK10762 83 IIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV--------GELSIGEQQMVEIAK 154 (501)
T ss_pred EEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch--------hhCCHHHHHHHHHHH
Confidence 9999987765 5999999986432100 0 0011345778899999987766655 689999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhH-hhcceEEEccC
Q 000711 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDG 649 (1338)
Q Consensus 592 al~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~-~~~d~i~~l~~ 649 (1338)
||+.+|+++||||||++||+.+...+++.+++ .|+|+|++||+++.+ ..||++++|++
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~ 216 (501)
T PRK10762 155 VLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRD 216 (501)
T ss_pred HHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 99999999999999999999999999887754 488999999999887 47999999986
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-57 Score=568.31 Aligned_cols=510 Identities=18% Similarity=0.203 Sum_probs=377.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAF-LR-RVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIH 184 (1338)
Q Consensus 107 l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~R~~lt~~l~ 184 (1338)
++..+++.++.+.+++..|.+.+.++|.+. .. +...+ ..+++.++++.++..+..|+..++..+....+..+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 80 (529)
T TIGR02857 5 LALLGLLGALGALLIIAQAWLLARVIDGLISAGEPLAEL----LPALGALALAVLLRALLGWLGERAAARAAAAVKSQLR 80 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666778888888999999999999884 32 22222 2222223333344556677777777777777999999
Q ss_pred HHHhcccccccccccCCC-CCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHH
Q 000711 185 TRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGT 263 (1338)
Q Consensus 185 ~~~~~~~~~~~~~~~d~~-~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~l~~~~~~~~ 263 (1338)
.+.|++..+.+..++++. .++..+|+++|++.+.+.+...+..++..++..+.+.+ ++.+++|.+++++++.+++..+
T Consensus 81 ~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~l~~~~l~~~~l~~~ 159 (529)
T TIGR02857 81 ERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILA-AVFPADWISGLILLLTAPLIPI 159 (529)
T ss_pred HHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999999998764 67999999999999887776655555544443333322 2345678777776666555555
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 264 MMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLK 343 (1338)
Q Consensus 264 ~~~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (1338)
+..++.++..+...+.++..+++.....+..+++++||.|+.|+.+.+++.+..++..+...+..+.....+.+..++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (529)
T TIGR02857 160 FMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFAT 239 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566777777777777777777777888888999999999999999877776666555443333222222222222111
Q ss_pred HHHHHHHHHHHHHhHhcccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 000711 344 YLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISREL 423 (1338)
Q Consensus 344 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~ri~~~~~~~~~~ 423 (1338)
+...+.+++.....+.| ..+.|.. ++ +..+...++.++..+...+..+++...+.+|+.++++.+++.
T Consensus 240 -~~~~~~~~~~~~~~~~g-----~~t~g~~--~~----~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~ 307 (529)
T TIGR02857 240 -LSVALVAVYIGFRLLAG-----DLDLATG--LF----VLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPL 307 (529)
T ss_pred -HHHHHHHHHHHHHHHcC-----CCCHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 11111001110011122 2355532 22 223344566678888888899999999999999998743221
Q ss_pred cccCCCCCCCCCCCCcCCCCcEEEEeEEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEE
Q 000711 424 SIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502 (1338)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i 502 (1338)
. +.. . ......+.|+++||+|.||++ +++|+|+||++++||+++|+||||||||||+|+|+|+|+|++|+|
T Consensus 308 ~--~~~---~---~~~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I 379 (529)
T TIGR02857 308 A--GKA---P---VTAAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSI 379 (529)
T ss_pred C--CCc---C---CCCCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 1 000 0 000113479999999999875 489999999999999999999999999999999999999999999
Q ss_pred EeCCCC------ccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccc---
Q 000711 503 AKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI--- 573 (1338)
Q Consensus 503 ~~~~~~------~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~--- 573 (1338)
.+||.+ .+++++++||||+|++|++|++|||.++.+. .+++++.++++.++++++++++|.+.++
T Consensus 380 ~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~------~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~ 453 (529)
T TIGR02857 380 AVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPD------ASDAEIRRALERAGLDEFVAALPQGLDTLIG 453 (529)
T ss_pred EECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCC------CCHHHHHHHHHHcCcHHHHHhCcccccchhc
Confidence 999975 3467889999999999999999999997532 4678999999999999999999976554
Q ss_pred cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhHhhcceEEEc
Q 000711 574 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSL 647 (1338)
Q Consensus 574 ~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~~~~d~i~~l 647 (1338)
++|.+||||||||++||||++++|++++||||||+||+++++.+++.+++ .++|+|+||||+++++.||+|++|
T Consensus 454 e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 454 EGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred cccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 47889999999999999999999999999999999999999999999876 489999999999999999999975
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-60 Score=587.67 Aligned_cols=196 Identities=26% Similarity=0.320 Sum_probs=162.1
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCC--CCCccEEEeCC----------------
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW--PLVSGHIAKPG---------------- 506 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~--~~~~G~i~~~~---------------- 506 (1338)
|+++|+++.|+ ++++|+|+||++++||+++|+||||||||||+|+|+|+. +|++|+|.+++
T Consensus 1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 1 IEVKNLTKKFD-GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred CEEEEEEEEEC-CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence 47899999995 468999999999999999999999999999999999997 79999999862
Q ss_pred -------CC----------------ccccccEEEEecC-CCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCc
Q 000711 507 -------VG----------------SDLNKEIFYVPQR-PYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE 561 (1338)
Q Consensus 507 -------~~----------------~~~~~~i~~v~Q~-~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 561 (1338)
.+ ..+++.++|+||+ +.++. .|++||+.++...........++++.++++.++++
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 159 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLS 159 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh
Confidence 10 0124569999998 45554 59999998753211100111235678899999998
Q ss_pred hHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhh
Q 000711 562 YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPAL 637 (1338)
Q Consensus 562 ~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~ 637 (1338)
+..++.+ .+||||||||++|||||+.+|+++||||||++||+.+.+++.+.+++ .|+|+|+|||+++.
T Consensus 160 ~~~~~~~--------~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~ 231 (520)
T TIGR03269 160 HRITHIA--------RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV 231 (520)
T ss_pred hhhhcCc--------ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence 8887766 68999999999999999999999999999999999999998877653 48999999999998
Q ss_pred Hh-hcceEEEccC
Q 000711 638 VA-FHDVVLSLDG 649 (1338)
Q Consensus 638 ~~-~~d~i~~l~~ 649 (1338)
+. .||++++|++
T Consensus 232 ~~~~~d~i~~l~~ 244 (520)
T TIGR03269 232 IEDLSDKAIWLEN 244 (520)
T ss_pred HHHhcCEEEEEeC
Confidence 75 7999999975
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-57 Score=575.19 Aligned_cols=529 Identities=17% Similarity=0.161 Sum_probs=379.2
Q ss_pred HHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 86 KSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSK 165 (1338)
Q Consensus 86 ~~l~~l~~~~~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (1338)
+.++++++++++++. .+.+.+++.++...+++..|.+.+.++|.+..+. .+...++.++ +..++..+..
T Consensus 5 ~~~~~l~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~--~~~~~~~~~~----~~~~~~~~~~ 73 (588)
T PRK13657 5 RLYARVLQYLGAEKR-----LGILLAVANVLLAAATFAEPILFGRIIDAISGKG--DIFPLLAAWA----GFGLFNIIAG 73 (588)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cHHHHHHHHH----HHHHHHHHHH
Confidence 445666666655443 2566677778888888999999999999887542 2222111111 1122223334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCC-CCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000711 166 YITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCS 244 (1338)
Q Consensus 166 ~l~~~l~~~~R~~lt~~l~~~~~~~~~~~~~~~~d~~-~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~ 244 (1338)
|+..++..+....+..+++.+++++....|.+++++. .++..+|+++|++.+.+.....+...+..++..++. ..+++
T Consensus 74 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 152 (588)
T PRK13657 74 VLVARHADRLAHRRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVL-LPLAL 152 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 4444444444344555566788888888899888754 668999999999988776666666655554443322 23344
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 000711 245 YASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324 (1338)
Q Consensus 245 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~ 324 (1338)
+++|.+++++++.+++..++..++.++..+...+.++..+++.....+..++++.||.|+.|+.+.+++.+.+++..+..
T Consensus 153 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~ 232 (588)
T PRK13657 153 FMNWRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQ 232 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence 56787777766666655555666677777776667777777777787888899999999999999988887777766654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 325 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLN 404 (1338)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~ 404 (1338)
.+..+.......+..+.. .+.....+++....++.|. .+.|.. ++ +..++..++.++..+...+..+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~v~~g~-----lt~g~~--~a----~~~l~~~~~~~l~~l~~~~~~~~ 300 (588)
T PRK13657 233 MPVLSWWALASVLNRAAS-TITMLAILVLGAALVQKGQ-----LRVGEV--VA----FVGFATLLIGRLDQVVAFINQVF 300 (588)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCC-----cCHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 433332222222222111 1111111111111112233 355543 22 12334455667778888888888
Q ss_pred HHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCcCCCCcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcH
Q 000711 405 RLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGK 484 (1338)
Q Consensus 405 ~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGK 484 (1338)
....+.+|+.++++.+++.+.... . .......+.|+++||+|.||+++++|+|+||++++||+++|+|+|||||
T Consensus 301 ~~~~~~~~i~~l~~~~~~~~~~~~-----~-~~~~~~~~~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGK 374 (588)
T PRK13657 301 MAAPKLEEFFEVEDAVPDVRDPPG-----A-IDLGRVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGK 374 (588)
T ss_pred HHHHHHHHHHHHhCCCcccCCCCC-----C-CCcCCCCCeEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCH
Confidence 888999999988765433211000 0 0000113469999999999866789999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCccEEEeCCCC------ccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHc
Q 000711 485 SSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV 558 (1338)
Q Consensus 485 STLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~ 558 (1338)
|||+++|+|+|+|++|+|.+||.+ .+++++|+||||+|++|++|++|||.++.+. .+++++.++++.+
T Consensus 375 STLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~------~~d~~i~~al~~~ 448 (588)
T PRK13657 375 STLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPD------ATDEEMRAAAERA 448 (588)
T ss_pred HHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCC------CCHHHHHHHHHHh
Confidence 999999999999999999999975 3467899999999999999999999997532 4688999999999
Q ss_pred CCchHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEec
Q 000711 559 DLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISH 633 (1338)
Q Consensus 559 ~l~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH 633 (1338)
+++++++++|.+.++ ++|.+||||||||++|||||+++|++++||||||+||+++++.+++.+++ .++|+|+|||
T Consensus 449 ~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitH 528 (588)
T PRK13657 449 QAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAH 528 (588)
T ss_pred CHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEe
Confidence 999999999876554 46889999999999999999999999999999999999999999998875 4799999999
Q ss_pred ChhhHhhcceEEEccCC
Q 000711 634 RPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 634 ~~~~~~~~d~i~~l~~~ 650 (1338)
|++.++.+|+|++|+++
T Consensus 529 r~~~~~~~D~ii~l~~G 545 (588)
T PRK13657 529 RLSTVRNADRILVFDNG 545 (588)
T ss_pred cHHHHHhCCEEEEEECC
Confidence 99999999999999863
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-58 Score=575.40 Aligned_cols=451 Identities=18% Similarity=0.130 Sum_probs=298.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-ccchhhcccCCCCCCccchhHHHHHHHHHHHHHHHHHhhHhH----
Q 000711 812 SFIAPSIRHLTARLALGWRIRMTQHLLKSYLRK-NSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPS---- 886 (1338)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~~-~~ff~~~~~~~~~~~~~~Rls~D~~~l~~~l~~~~~~~i~~~---- 886 (1338)
.+..+...++..+...++..++..+++++.++. ..||+. ...++..+|+++|++.+...+...+..++..+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~----~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~ 142 (529)
T TIGR02868 67 AVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRRR----FQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGS 142 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccc----CChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555555566666666666664 356653 23467889999999999877665444333222
Q ss_pred ---HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhcCccccccHHHHHhccchHHHHHHHHhhHHHhhhcCChHHH
Q 000711 887 ---VDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGARE 963 (1338)
Q Consensus 887 ---~~i~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~~~~~~e~i~~~~~~~~e 963 (1338)
+.+++++|.++++.. +.+.+++++...+.... ......+.++..+.+.....+...+.++|+.|+.++.+
T Consensus 143 ~~~~~l~~~~~~l~l~~l----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~ 215 (529)
T TIGR02868 143 AAVAAIALLSVPAALVLA----AGLLLAGFVAPLVSLRA---ARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPA 215 (529)
T ss_pred HHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHH
Confidence 223455666654421 11111111111111111 11222233333344444555566678999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhhhHHHHHHHHHHHHhhcccchhhhchHHHHHHHHHHHHHHHHHH
Q 000711 964 KAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSF 1043 (1338)
Q Consensus 964 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~~~~~~~~~~ 1043 (1338)
.+.+++..++..+...+..+...+......++. .+...+.++++........ .+.|.+...+. +.....
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~g~--~t~g~l~~~~~----~~~~~~ 284 (529)
T TIGR02868 216 LAQVEAADRELLAAERRAARATGLGAAAQLLAA-----GLAVLGALWAGGPAVADGT--LAPATLAVLVL----LPLAAF 284 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhCCC--CChhHHHHHHH----HHHHHH
Confidence 777766665555544333322222221111111 1111112222211100000 12333333322 223444
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHHHHHHhhcCCCCCCccCCccCCCCCCCCCCceEEeeeEEeCCCccccccccceEE
Q 000711 1044 LAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEI 1123 (1338)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~a~~Ri~~~~~~~~~~~~~~~~~~~~~~~~wp~~~~~g~I~f~nV~f~yp~~~~vL~~lsf~I 1123 (1338)
.++..+......+.+...+.+|+.++.+.+++.++.. ...+...++ ..+.|+|+||+|.||+++++|+|+||+|
T Consensus 285 ~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~---~~~~~~~~~---~~~~I~~~~vsf~Y~~~~~vL~~isl~i 358 (529)
T TIGR02868 285 EAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGV---VPAAGALGL---GKPTLELRDLSFGYPGSPPVLDGVSLDL 358 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCC---CCCCcccCC---CCceEEEEEEEEecCCCCceeecceEEE
Confidence 5666777777788888899999999876543221110 000011122 2467999999999988778999999999
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc-cCCcccEEEEcCCCCCCCCCHHHHhcCCCchHHHH
Q 000711 1124 VPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAE 1202 (1338)
Q Consensus 1124 ~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~-~~lr~~i~~VpQdP~LF~GTIReNL~~p~~~~~~~ 1202 (1338)
+|||++|||||||||||||+++|+|+|+|++|+|.+||+|++++ ..+|++|+||||||+||+|||||||.++.+
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~----- 433 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRP----- 433 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCC-----
Confidence 99999999999999999999999999999999999999999987 445778999999999999999999998532
Q ss_pred HHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC-cccCCCChhHHHHHHHHHHhhcCCCEEEeec
Q 000711 1203 LRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILDE 1281 (1338)
Q Consensus 1203 ~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLDE 1281 (1338)
+..|++++++++.++++++++++|+||||.+ ++|.+||||||||||||||++++|+||||||
T Consensus 434 -----------------~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE 496 (529)
T TIGR02868 434 -----------------DATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDE 496 (529)
T ss_pred -----------------CCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 1234556677777788888888999999998 5789999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHh--cCCeEEEeccCC
Q 000711 1282 CTNATSVDVEEQLYRLAKD--MGITFVTSSQRP 1312 (1338)
Q Consensus 1282 ATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl 1312 (1338)
||||||.++|+.+++.+++ .++|+|+||||+
T Consensus 497 ~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 497 PTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999887754 589999999996
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-60 Score=583.09 Aligned_cols=197 Identities=22% Similarity=0.321 Sum_probs=166.6
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc-------cccccEE
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------DLNKEIF 516 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~-------~~~~~i~ 516 (1338)
.++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. .++++++
T Consensus 4 ~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 82 (501)
T PRK11288 4 YLSFDGIGKTFP-GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVA 82 (501)
T ss_pred eEEEeeeEEEEC-CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEE
Confidence 589999999996 46799999999999999999999999999999999999999999999998541 1346799
Q ss_pred EEecCCCCCC-CCHHHHhcCCCCCC--ccc-CCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHH
Q 000711 517 YVPQRPYTAV-GTLRDQLIYPLTSD--QEV-EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1338)
Q Consensus 517 ~v~Q~~~l~~-~tl~eni~~~~~~~--~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARa 592 (1338)
|+||++.++. .|++||+.++.... ... .....+++.++++.+++.+..++.+ .+||||||||++||||
T Consensus 83 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgGq~qrv~lara 154 (501)
T PRK11288 83 IIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL--------KYLSIGQRQMVEIAKA 154 (501)
T ss_pred EEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch--------hhCCHHHHHHHHHHHH
Confidence 9999998776 49999999864211 000 0112346778899999876655544 6899999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 593 l~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
|+.+|+++||||||++||+.+.+.+.+.+++ .|+|+|+|||+++.+. .||++++|++
T Consensus 155 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~ 215 (501)
T PRK11288 155 LARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKD 215 (501)
T ss_pred HHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999988764 4899999999999874 6999999986
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-59 Score=580.92 Aligned_cols=196 Identities=23% Similarity=0.334 Sum_probs=162.7
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCC--CccEEEeCCCCc-c------ccccE
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL--VSGHIAKPGVGS-D------LNKEI 515 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~--~~G~i~~~~~~~-~------~~~~i 515 (1338)
++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.+. . .++.+
T Consensus 2 l~i~~l~~~~~-~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (500)
T TIGR02633 2 LEMKGIVKTFG-GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI 80 (500)
T ss_pred EEEEeEEEEeC-CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCE
Confidence 68999999995 46799999999999999999999999999999999999987 799999998641 1 23579
Q ss_pred EEEecCCCCCC-CCHHHHhcCCCCCCc---cc-CCCCHHHHHHHHHHcCCchHH-hcCCCCccccCCCCCChhHHHHHHH
Q 000711 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQ---EV-EPLTHGGMVELLKNVDLEYLL-DRYPPEKEINWGDELSLGEQQRLGM 589 (1338)
Q Consensus 516 ~~v~Q~~~l~~-~tl~eni~~~~~~~~---~~-~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~~~g~~LSgGqkQRlal 589 (1338)
+||||+|.++. .|++||+.++..... .. .....+++.++++.+++.+.. ++.+ .+||||||||++|
T Consensus 81 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgG~~qrv~i 152 (500)
T TIGR02633 81 VIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV--------GDYGGGQQQLVEI 152 (500)
T ss_pred EEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCch--------hhCCHHHHHHHHH
Confidence 99999987765 599999988643110 00 011234577888999887543 2323 5899999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 590 ARal~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
||||+.+|+++||||||++||+.+.+.+.+.+++ .|+|+|+|||+++.+. .||++++|++
T Consensus 153 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~ 216 (500)
T TIGR02633 153 AKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRD 216 (500)
T ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999888754 5899999999999875 6999999976
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-57 Score=581.07 Aligned_cols=526 Identities=16% Similarity=0.184 Sum_probs=395.9
Q ss_pred HHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh-cChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 88 LQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFL-RRVPLFFQLISENILLCFLLSTMHSTSKY 166 (1338)
Q Consensus 88 l~~l~~~~~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (1338)
+.++++.++++++. +...++++++.+.+++..|...+.++|.+.. ++...+.. .++.++++.++..+..|
T Consensus 127 ~~~~~~~~~~~~~~-----~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~----l~~~~~~~~~~~~~~~~ 197 (694)
T TIGR01846 127 FSWFIPAIIRYRKQ-----FREVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSV----LALAMLAVAIFEPALGG 197 (694)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHH----HHHHHHHHHHHHHHHHH
Confidence 45566666665542 5556666777778888999999999998763 33333222 22222233334556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccCCC-CCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 000711 167 ITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSY 245 (1338)
Q Consensus 167 l~~~l~~~~R~~lt~~l~~~~~~~~~~~~~~~~d~~-~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~ 245 (1338)
++.++..+...++..+++.++|+++...|+++++++ .++..+|+ +|++.+.+.+...+...+..++..+++.. ++++
T Consensus 198 l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~-~l~~ 275 (694)
T TIGR01846 198 LRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLA-VMFF 275 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 777777777777999999999999999999999765 67889998 79998887766555554444443333433 3456
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Q 000711 246 ASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMR 325 (1338)
Q Consensus 246 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~ 325 (1338)
++|.+++++++.+++..++..++.+++.+...+.++..+++.....+...++++||.++.|+.+.+++.+.+++..+...
T Consensus 276 ~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 355 (694)
T TIGR01846 276 YSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASF 355 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHH
Confidence 78888888777776666666677888877777777777788888888888999999999999999988888877766544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccccc-CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 326 VVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLN 404 (1338)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~ 404 (1338)
+..+.......+..++. ......+++ +++.+. .+..+.|.. ++ +..+...++.++..+...+..++
T Consensus 356 ~~~~~~~~~~~~~~~i~---~~~~~~il~----~g~~lv~~g~it~G~l--ia----~~~l~~~~~~pl~~l~~~~~~~~ 422 (694)
T TIGR01846 356 RVTNLGNIAGQAIELIQ---KLTFAILLW----FGAHLVIGGALSPGQL--VA----FNMLAGRVTQPVLRLAQLWQDFQ 422 (694)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHhHH----HHHHHHHcCCCCHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333322222222211 111111111 111111 223356643 22 22344566678888999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCcCCCCcEEEEeEEEEcCC-CCeeeeeeeEEEeCCCEEEEEcCCCCc
Q 000711 405 RLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSG 483 (1338)
Q Consensus 405 ~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~-~~~~l~~~sl~i~~G~~~~i~G~sGsG 483 (1338)
+...+.+|+.++++.+++.+... . .......+.|+++||+|.|++ ++++|+|+||++++||+++|+||||||
T Consensus 423 ~~~~~~~ri~~~l~~~~e~~~~~-~------~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsG 495 (694)
T TIGR01846 423 QTGIALERLGDILNSPTEPRSAG-L------AALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSG 495 (694)
T ss_pred HHHHHHHHHHHHHcCCCCccCCC-C------CCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCC
Confidence 99999999999987654422100 0 000112457999999999975 467999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCccEEEeCCCC------ccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHH
Q 000711 484 KSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKN 557 (1338)
Q Consensus 484 KSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~ 557 (1338)
||||+++|+|+++|++|+|.+||.+ .+++++++||||+|++|++|++|||.++.+ ..+++++.++++.
T Consensus 496 KSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~------~~~~~~i~~a~~~ 569 (694)
T TIGR01846 496 KSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNP------GAPFEHVIHAAKL 569 (694)
T ss_pred HHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCC------CCCHHHHHHHHHH
Confidence 9999999999999999999999975 246788999999999999999999998753 2578899999999
Q ss_pred cCCchHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEe
Q 000711 558 VDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITIS 632 (1338)
Q Consensus 558 ~~l~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~it 632 (1338)
++++++++++|.+.++ +.|.+||||||||++||||++++|+++|||||||+||+++++.+++.+++ .++|+|+||
T Consensus 570 ~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~it 649 (694)
T TIGR01846 570 AGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIA 649 (694)
T ss_pred cChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 9999999999876554 46889999999999999999999999999999999999999999999876 489999999
Q ss_pred cChhhHhhcceEEEccCC
Q 000711 633 HRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 633 H~~~~~~~~d~i~~l~~~ 650 (1338)
||++.++.+|+|++|+++
T Consensus 650 H~~~~~~~~d~ii~l~~G 667 (694)
T TIGR01846 650 HRLSTVRACDRIIVLEKG 667 (694)
T ss_pred CChHHHHhCCEEEEEeCC
Confidence 999999999999999873
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-58 Score=574.74 Aligned_cols=191 Identities=21% Similarity=0.258 Sum_probs=162.0
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCccccccEEEEecCCCC
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYT 524 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q~~~l 524 (1338)
|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. ..++|+||++.+
T Consensus 2 l~i~~ls~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----~~i~~~~q~~~~ 75 (530)
T PRK15064 2 LSTANITMQFG-AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----ERLGKLRQDQFA 75 (530)
T ss_pred EEEEEEEEEeC-CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----CEEEEEeccCCc
Confidence 78999999995 468999999999999999999999999999999999999999999999873 469999999877
Q ss_pred CC-CCHHHHhcCCCCC-------------Ccc---c----------------CCCCHHHHHHHHHHcCCchHHh-cCCCC
Q 000711 525 AV-GTLRDQLIYPLTS-------------DQE---V----------------EPLTHGGMVELLKNVDLEYLLD-RYPPE 570 (1338)
Q Consensus 525 ~~-~tl~eni~~~~~~-------------~~~---~----------------~~~~~~~~~~~l~~~~l~~~~~-~~~~~ 570 (1338)
+. .|++||+.++... ... . ....+.++.++++.+++.+... +.+
T Consensus 76 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-- 153 (530)
T PRK15064 76 FEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLM-- 153 (530)
T ss_pred CCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCch--
Confidence 65 4999999875310 000 0 0011345677888888876443 333
Q ss_pred ccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHccCCeEEEEecChhhHh-hcceEEEccC
Q 000711 571 KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 571 ~~~~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
.+||||||||++|||||+.+|+++||||||++||+.+..++.+.+++.|.|+|+|||+++.+. .||++++|++
T Consensus 154 ------~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~ 227 (530)
T PRK15064 154 ------SEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDY 227 (530)
T ss_pred ------hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeC
Confidence 689999999999999999999999999999999999999999999888999999999999875 7999999986
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-57 Score=564.16 Aligned_cols=526 Identities=16% Similarity=0.132 Sum_probs=388.8
Q ss_pred HHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 88 LQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYI 167 (1338)
Q Consensus 88 l~~l~~~~~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 167 (1338)
+++++++++|+++. ++..+++.++.+.+.+..|...+.++|.+..++. .... +++.++..++..+..|+
T Consensus 7 ~~~l~~~l~~~k~~-----~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~ 75 (585)
T TIGR01192 7 YVRALSYLNVHKNR-----VLLIVIANITLAAITIAEPILFGRIIDAISSKSD--VLPT----LALWAGFGVFNTIAYVL 75 (585)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--HHHH----HHHHHHHHHHHHHHHHH
Confidence 56777888877662 5566777788888889999999999998775432 1111 11111223344556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccCCC-CCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc
Q 000711 168 TGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYA 246 (1338)
Q Consensus 168 ~~~l~~~~R~~lt~~l~~~~~~~~~~~~~~~~d~~-~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~ 246 (1338)
..++..+....+..+++.++|++....|+++++++ .++..+|+++|++.+.+.+...+...+..++..+.+.+ .++++
T Consensus 76 ~~~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~-~l~~~ 154 (585)
T TIGR01192 76 VAREADRLAHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIP-TAFAM 154 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 77777776666777888899999999999999764 67999999999999887777766666555554433333 34467
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Q 000711 247 SPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRV 326 (1338)
Q Consensus 247 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~ 326 (1338)
+|.+++++++.+++..++..++.++..+...+.++..+++.....+..+++++||.|+.|+.+.+++++..++..+...+
T Consensus 155 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (585)
T TIGR01192 155 DWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYP 234 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 88888887777666666666677777766666666777777777777789999999999999998887777665554433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccccc-CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 327 VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNR 405 (1338)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~ 405 (1338)
..+.......+..++ .......+++ +++.+. .+..+.|.. ++. ..++..++.++..+...+..++.
T Consensus 235 ~~~~~~~~~~~~~~~---~~~~~~~v~~----~g~~~v~~g~it~g~l--~a~----~~~~~~l~~~~~~l~~~~~~~~~ 301 (585)
T TIGR01192 235 VLDWWALASGLNRMA---STISMMCILV----IGTVLVIKGELSVGEV--IAF----IGFANLLIGRLDQMSGFITQIFE 301 (585)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHH----HHHHHHHcCCCCHHHH--HHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 322222111111111 1111111111 111111 222355543 222 23344555677778888888899
Q ss_pred HHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCcCCCCcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHH
Q 000711 406 LSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKS 485 (1338)
Q Consensus 406 ~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKS 485 (1338)
...+.+|+.++++.+++.+..... . ......+.++++||+|.|++++++++|+||++++||+++|+||||||||
T Consensus 302 ~~~~~~ri~~~~~~~~~~~~~~~~-~-----~~~~~~~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKS 375 (585)
T TIGR01192 302 ARAKLEDFFDLEDSVFQREEPADA-P-----ELPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKT 375 (585)
T ss_pred HHHHHHHHHHHHcCCccccCCccC-C-----CCCCCCCeEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHH
Confidence 999999999988754332111000 0 0011134699999999998767899999999999999999999999999
Q ss_pred HHHHHHcCCCCCCccEEEeCCCC------ccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcC
Q 000711 486 SLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVD 559 (1338)
Q Consensus 486 TLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~ 559 (1338)
||+++|+|+++|++|+|.++|.+ .++++.++||||+|++|++|++|||.++.+. .+++++.++++.++
T Consensus 376 TL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~------~~~~~~~~a~~~~~ 449 (585)
T TIGR01192 376 TLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREG------ATDEEVYEAAKAAA 449 (585)
T ss_pred HHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCC------CCHHHHHHHHHHhC
Confidence 99999999999999999999965 2456789999999999999999999997532 46788999999999
Q ss_pred CchHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecC
Q 000711 560 LEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHR 634 (1338)
Q Consensus 560 l~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~ 634 (1338)
+++++.++|.+.++ ++|.+||||||||++|||||+++|+++|||||||+||+++++.+++.+.+ .++|+|+||||
T Consensus 450 ~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~ 529 (585)
T TIGR01192 450 AHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHR 529 (585)
T ss_pred cHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 99999988865443 56889999999999999999999999999999999999999999998875 48999999999
Q ss_pred hhhHhhcceEEEccCC
Q 000711 635 PALVAFHDVVLSLDGE 650 (1338)
Q Consensus 635 ~~~~~~~d~i~~l~~~ 650 (1338)
++.++.+|+|++|+++
T Consensus 530 ~~~~~~~d~i~~l~~G 545 (585)
T TIGR01192 530 LSTVRNADLVLFLDQG 545 (585)
T ss_pred hHHHHcCCEEEEEECC
Confidence 9999999999999873
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-57 Score=568.32 Aligned_cols=530 Identities=20% Similarity=0.238 Sum_probs=387.5
Q ss_pred HHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 88 LQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAF-LRRVPLFFQLISENILLCFLLSTMHSTSKY 166 (1338)
Q Consensus 88 l~~l~~~~~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (1338)
++.++++++++++ . +.+.+++.++...+++..|...+.++|.+. +.+...+...+ ++.+++.++.....|
T Consensus 6 ~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 76 (576)
T TIGR02204 6 LAALWPFVRPYRG----R-VLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYF----AFLLVVALVLALGTA 76 (576)
T ss_pred HHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 4455666655433 2 555666777888888899999999999854 33333322211 112222223344455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccCCC-CCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 000711 167 ITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSY 245 (1338)
Q Consensus 167 l~~~l~~~~R~~lt~~l~~~~~~~~~~~~~~~~d~~-~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~ 245 (1338)
+..++..+....+..+++...+++....+.+++++. .++..+|+++|++.+.+.+...+..++..++..+.+. .++++
T Consensus 77 ~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 155 (576)
T TIGR02204 77 ARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGL-IMMFI 155 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 666666666666888999999999999999888654 6688899999999987766666555544444433322 22345
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Q 000711 246 ASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMR 325 (1338)
Q Consensus 246 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~ 325 (1338)
++|.+++++++..++..++..++.++..+...+.++.++++...+.+..+++++||.++.|+.+.+++.+.+++..+...
T Consensus 156 ~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~ 235 (576)
T TIGR02204 156 TSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAAR 235 (576)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence 67877777766666665666667888888888888888888888999999999999999999999888888777666544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 326 VVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNR 405 (1338)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~ 405 (1338)
+..+...+...+..++. ++.....+++....++.|. .+.|.. ++ +..+...++.++..+...+..+.+
T Consensus 236 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~v~~g~-----lt~g~~--~~----~~~~~~~~~~pl~~~~~~~~~~~~ 303 (576)
T TIGR02204 236 QRIRTRALLTAIVIVLV-FGAIVGVLWVGAHDVIAGK-----MSAGTL--GQ----FVFYAVMVAGSIGTLSEVWGELQR 303 (576)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCC-----CCHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43332222222221111 0111111111111122232 355533 22 122344556788888889999999
Q ss_pred HHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCcCCCCcEEEEeEEEEcCCC--CeeeeeeeEEEeCCCEEEEEcCCCCc
Q 000711 406 LSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPNGSG 483 (1338)
Q Consensus 406 ~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~sGsG 483 (1338)
...+.+|+.++++.+++.+..... . .. ..+..+.|+++||+|.||++ +++|+|+||+++|||+++|+||||||
T Consensus 304 ~~~~~~ri~~~l~~~~~~~~~~~~-~---~~-~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsG 378 (576)
T TIGR02204 304 AAGAAERLIELLQAEPDIKAPAHP-K---TL-PVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAG 378 (576)
T ss_pred HHHHHHHHHHHhCCCCcCCCCCCC-c---cC-CcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCC
Confidence 999999999998765432211000 0 00 00113469999999999853 68999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCccEEEeCCCC------ccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHH
Q 000711 484 KSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKN 557 (1338)
Q Consensus 484 KSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~ 557 (1338)
||||+++|+|+|+|++|+|.+||.+ .+++++++|+||+|++|++|++|||.++.+. .+++++.++++.
T Consensus 379 KSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~------~~~~~~~~~l~~ 452 (576)
T TIGR02204 379 KSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPD------ATDEEVEAAARA 452 (576)
T ss_pred HHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCC------CCHHHHHHHHHH
Confidence 9999999999999999999999965 2456789999999999999999999997642 467899999999
Q ss_pred cCCchHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEe
Q 000711 558 VDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITIS 632 (1338)
Q Consensus 558 ~~l~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~it 632 (1338)
+++.++++++|.+.++ ++|.+||||||||++||||++++|+++|||||||+||+++++.+++.+++ .++|+|+||
T Consensus 453 ~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~Iiit 532 (576)
T TIGR02204 453 AHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIA 532 (576)
T ss_pred cCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 9999999999876443 47889999999999999999999999999999999999999999998876 489999999
Q ss_pred cChhhHhhcceEEEccCC
Q 000711 633 HRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 633 H~~~~~~~~d~i~~l~~~ 650 (1338)
||++.++.+|++++++++
T Consensus 533 H~~~~~~~~d~vi~l~~g 550 (576)
T TIGR02204 533 HRLATVLKADRIVVMDQG 550 (576)
T ss_pred cchHHHHhCCEEEEEECC
Confidence 999999999999999874
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-58 Score=573.47 Aligned_cols=194 Identities=21% Similarity=0.329 Sum_probs=162.0
Q ss_pred CcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCccccccEEEEecCC
Q 000711 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP 522 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q~~ 522 (1338)
..|+++||++.|++++++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++ +..++||||+|
T Consensus 5 ~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----~~~i~~v~Q~~ 79 (556)
T PRK11819 5 YIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----GIKVGYLPQEP 79 (556)
T ss_pred EEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----CCEEEEEecCC
Confidence 3699999999996357899999999999999999999999999999999999999999999875 24799999999
Q ss_pred CCCCC-CHHHHhcCCCCCC--------------cccC----------------------CCCHHHHHHHHHHcCCchHHh
Q 000711 523 YTAVG-TLRDQLIYPLTSD--------------QEVE----------------------PLTHGGMVELLKNVDLEYLLD 565 (1338)
Q Consensus 523 ~l~~~-tl~eni~~~~~~~--------------~~~~----------------------~~~~~~~~~~l~~~~l~~~~~ 565 (1338)
.+++. |++||+.++.... .... ...++++.++++.+++.. .+
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~ 158 (556)
T PRK11819 80 QLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WD 158 (556)
T ss_pred CCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-cc
Confidence 88764 9999998753100 0000 001235566777777743 33
Q ss_pred cCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHccCCeEEEEecChhhHh-hcceE
Q 000711 566 RYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVV 644 (1338)
Q Consensus 566 ~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~t~i~itH~~~~~~-~~d~i 644 (1338)
+.+ .+||||||||++|||||+.+|+++||||||++||+.+..++.+.+++.+.|+|+|||+++.+. .+|+|
T Consensus 159 ~~~--------~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i 230 (556)
T PRK11819 159 AKV--------TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWI 230 (556)
T ss_pred Cch--------hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeE
Confidence 333 689999999999999999999999999999999999999999999987779999999999875 68999
Q ss_pred EEccCC
Q 000711 645 LSLDGE 650 (1338)
Q Consensus 645 ~~l~~~ 650 (1338)
++|+++
T Consensus 231 ~~l~~g 236 (556)
T PRK11819 231 LELDRG 236 (556)
T ss_pred EEEeCC
Confidence 999863
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-57 Score=584.83 Aligned_cols=462 Identities=16% Similarity=0.155 Sum_probs=317.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-ccchhhcccCCCCCCccchhHHHHHHHHHHHHHHHHHhhH----
Q 000711 810 ASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRK-NSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVK---- 884 (1338)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~~-~~ff~~~~~~~~~~~~~~Rls~D~~~l~~~l~~~~~~~i~---- 884 (1338)
+..+..+...++..++..+...++...++++.++. ..||+. ...++..+|++ |++.+.+.+...+..++.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~----~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~ 262 (686)
T TIGR03797 188 GAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQ----YSTGDLASRAM-GISQIRRILSGSTLTTLLSGIF 262 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCC----CChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555666666666666664 356653 23467788987 677776665543322222
Q ss_pred ---hHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhcCccccccHHHHHhccchHHHHHHHHhhHHHhhhcCChH
Q 000711 885 ---PSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGA 961 (1338)
Q Consensus 885 ---~~~~i~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~~~~~~e~i~~~~~~~ 961 (1338)
.++.+++++|.++++.. +++.+++++. ....+.......+..+..+.......+...+.++++.++.+.
T Consensus 263 ~~~~~~~l~~~~~~l~li~l----~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~ 334 (686)
T TIGR03797 263 ALLNLGLMFYYSWKLALVAV----ALALVAIAVT----LVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAEN 334 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccH
Confidence 12223455666654421 1111111111 111122233334444444444555556667889999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhhhHHHHHHHHHHHHhhcccchhhhchHHHHHHHHHHHHHHHH
Q 000711 962 REKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQ 1041 (1338)
Q Consensus 962 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~~~~~~~~ 1041 (1338)
.....+++.+.+..+...+..+...+...+..++.. +...+.++++........ .+.|.+..+. .+...
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-----~~~~~il~~g~~lv~~g~--ltiG~lva~~----~l~~~ 403 (686)
T TIGR03797 335 RAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPV-----LTSAALFAAAISLLGGAG--LSLGSFLAFN----TAFGS 403 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcCC--CCHHHHHHHH----HHHHH
Confidence 887777777777666555444333333222222211 111111222211110100 1334443332 23345
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHhhcCCCCCCccCCccCCCCCCCCCCceEEeeeEEeCCC-ccccccccc
Q 000711 1042 SFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS-QKLLARQLT 1120 (1338)
Q Consensus 1042 ~~~~~~~~~~~~~~~~~~~~a~~Ri~~~~~~~~~~~~~~~~~~~~~~~~wp~~~~~g~I~f~nV~f~yp~-~~~vL~~ls 1120 (1338)
...++..+......+.+...+.+|+.++.+.+++.++. .. +.....|.|+|+||+|+||+ ++++|+|+|
T Consensus 404 ~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~-----~~-----~~~~~~~~I~~~nvsf~Y~~~~~~vL~~is 473 (686)
T TIGR03797 404 FSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA-----KT-----DPGKLSGAIEVDRVTFRYRPDGPLILDDVS 473 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC-----cC-----CCCCCCceEEEEEEEEEcCCCCccceeeeE
Confidence 56678888888888999999999999987643321110 00 01112578999999999964 678999999
Q ss_pred eEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEEEEcCCCCCCCCCHHHHhcCCCch
Q 000711 1121 FEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSR 1198 (1338)
Q Consensus 1121 f~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~~VpQdP~LF~GTIReNL~~p~~~ 1198 (1338)
|+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|++++ +.+|++|+||||||+||+|||||||.++.+
T Consensus 474 l~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~- 552 (686)
T TIGR03797 474 LQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP- 552 (686)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-
Confidence 99999999999999999999999999999999999999999999987 467788999999999999999999987532
Q ss_pred HHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC-cccCCCChhHHHHHHHHHHhhcCCCEE
Q 000711 1199 EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFG 1277 (1338)
Q Consensus 1199 ~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~IL 1277 (1338)
..|++++++++.++++++++++|+||||.+ ++|.+||||||||||||||++++|+||
T Consensus 553 ----------------------~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iL 610 (686)
T TIGR03797 553 ----------------------LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRIL 610 (686)
T ss_pred ----------------------CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 124556677777788888888999999998 578999999999999999999999999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHhcCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1278 ILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1278 iLDEATSaLD~~te~~i~~~~~~~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
|||||||+||.++|+.+.+.++..++|+|+||||+++++.+|++++|++|+
T Consensus 611 iLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~~D~Iivl~~G~ 661 (686)
T TIGR03797 611 LFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRNADRIYVLDAGR 661 (686)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHcCCEEEEEECCE
Confidence 999999999999999999888767899999999999999999999997763
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-56 Score=518.81 Aligned_cols=513 Identities=17% Similarity=0.222 Sum_probs=389.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000711 109 ALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYF 188 (1338)
Q Consensus 109 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~R~~lt~~l~~~~~ 188 (1338)
+..++.++..++....+.+.....+.++.... +.. ++..++..++..++.....|...+++-+--..+...+|++.|
T Consensus 4 i~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~--~~~-l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l 80 (559)
T COG4988 4 ISALLAVLSGIAIIAQAALLADILTKLIEGQL--FQS-LLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVL 80 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666677777777777776654 222 222333333444566778888888888888888889999999
Q ss_pred cccccccccccCCC-CCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Q 000711 189 ENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMMRN 267 (1338)
Q Consensus 189 ~~~~~~~~~~~d~~-~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~l~~~~~~~~~~~~ 267 (1338)
++.......+..+. .+...+.+++-|+.+...+...+...+.+.+.-++.. ...++.+|.-++++++.+|+.-+.+..
T Consensus 81 ~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~-i~v~~~~w~aalIllit~PlIPlfMil 159 (559)
T COG4988 81 DKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLIL-IAIFFFNWAAALILLITAPLIPLFMIL 159 (559)
T ss_pred HHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99988888777654 5688899999999988877777766555444332221 223456888888888887777666666
Q ss_pred HhhhHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 268 FSPAFGKLMSKEQQLEGEYR-QLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLG 346 (1338)
Q Consensus 268 ~~~~~~~l~~~~~~~e~~~r-~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (1338)
++..-++...++-+..+++. ..+.+++ +.+++|+|+..+...+++.+.-.+..+...+..+..+..+.+..++. +++
T Consensus 160 vg~~a~~~s~~~~~~~~~ls~~FLD~Lr-GL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa-~ls 237 (559)
T COG4988 160 VGLAAKDASEKQFSALARLSGHFLDRLR-GLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFA-YLS 237 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 77776666666666666654 4567776 89999999999999988877766666666677777777666666553 333
Q ss_pred HHHHHHHHHHhHhc-ccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 000711 347 ATVAVILIIEPFFA-GNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSI 425 (1338)
Q Consensus 347 ~~~~~~~~~~~~~~-g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~ri~~~~~~~~~~~~ 425 (1338)
.++..+.+...+.+ |. .++..+ + .++-...-+|.|+.++...++.-....++.+.+..+++.+.+...
T Consensus 238 iAlvAv~~g~~ll~~G~-----ltl~~~--l----~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~ 306 (559)
T COG4988 238 IALVAVYIGFRLLGEGD-----LTLFAG--L----FVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPG 306 (559)
T ss_pred HHHHHHHHHHHHHccCC-----ccHHHH--H----HHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCC
Confidence 33333333222333 32 233221 1 122344578899999999999988889999999999886554321
Q ss_pred cCCCCCCCCCCCCcCCCCcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeC
Q 000711 426 EDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKP 505 (1338)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~ 505 (1338)
...... ....+.-.++.+|+++.||+++++++|+||++++|+.++|+|+||||||||+++|+|+.+|++|+|.+|
T Consensus 307 ~~~~~~-----~~~~~~~ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vn 381 (559)
T COG4988 307 SGEKAE-----VANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVN 381 (559)
T ss_pred Cccccc-----cccCCCceeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEEC
Confidence 110000 001112345566999999998899999999999999999999999999999999999999999999999
Q ss_pred CCC------ccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccc---cCC
Q 000711 506 GVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWG 576 (1338)
Q Consensus 506 ~~~------~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g 576 (1338)
|.+ ..++++++||||+||+|.||+||||.++.+. .+++++.++++.+++.++++. |.+.++ +.|
T Consensus 382 g~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~------~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G 454 (559)
T COG4988 382 GIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPD------ASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGG 454 (559)
T ss_pred CccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCc------CCHHHHHHHHHHhcHHHhhcC-CCcccchhccCC
Confidence 976 3578999999999999999999999998753 578999999999999999998 765543 578
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhHhhcceEEEccCC
Q 000711 577 DELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 577 ~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~~~~d~i~~l~~~ 650 (1338)
..|||||+|||++||||+++++++++|||||+||.++|+.|.+.+.+ +++|+|+||||+..+..+|+|++|+++
T Consensus 455 ~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G 530 (559)
T COG4988 455 AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNG 530 (559)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCC
Confidence 89999999999999999999999999999999999999999998875 489999999999999999999999974
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-59 Score=574.40 Aligned_cols=194 Identities=22% Similarity=0.374 Sum_probs=167.8
Q ss_pred CcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc------c-ccccE
Q 000711 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------D-LNKEI 515 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~-~~~~i 515 (1338)
..++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. . .+..+
T Consensus 10 ~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 10 PLLCARSISKQYS-GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred ceEEEEeEEEEeC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 3699999999996 46799999999999999999999999999999999999999999999998541 1 12469
Q ss_pred EEEecCCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000711 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1338)
Q Consensus 516 ~~v~Q~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1338)
+|+||++.++. .|++||+.++.... ...++++.++++.+++.+..++.+ .+||||||||++|||||+
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKR----QASMQKMKQLLAALGCQLDLDSSA--------GSLEVADRQIVEILRGLM 156 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccc----hHHHHHHHHHHHHcCCCccccCCh--------hhCCHHHHHHHHHHHHHH
Confidence 99999998766 49999999864321 123456788999999987776655 689999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhH-hhcceEEEccC
Q 000711 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDG 649 (1338)
Q Consensus 595 ~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~-~~~d~i~~l~~ 649 (1338)
.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+ ..||++++|++
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~ 215 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRD 215 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999988764 489999999999977 47999999986
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-57 Score=513.33 Aligned_cols=534 Identities=18% Similarity=0.214 Sum_probs=347.7
Q ss_pred hHHHHHHHHHHhcccCchhH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh-cChhHHH----HHHHHHHHHHHHHH
Q 000711 85 LKSLQVLAAILLSEMGKMGA-RDLLALVGIVVLRTALSNRLAKVQGFLFRAAFL-RRVPLFF----QLISENILLCFLLS 158 (1338)
Q Consensus 85 ~~~l~~l~~~~~p~~~~~~~-~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~----~~~~~~~~~~~~~~ 158 (1338)
++.++.+..+.+|.-. ++. ..++..+++++.+-++.+.+|...+...+.+-+ +..|..+ ..+..+.+.-+...
T Consensus 10 ~~~~~~l~~~~~~k~~-p~~r~~v~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~ 88 (591)
T KOG0057|consen 10 LKILRSLVSYKWPKSR-PVLRFRVFPALGLLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSS 88 (591)
T ss_pred hHHHHHHHhhheecCC-ceeeehHHHHHHHHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHH
Confidence 5667777777777433 222 224555666777788889999999988888742 2233211 22222333222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCC-CCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHH
Q 000711 159 TMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLL 237 (1338)
Q Consensus 159 ~~~~~~~~l~~~l~~~~R~~lt~~l~~~~~~~~~~~~~~~~d~~-~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~ 237 (1338)
+++-+..++-....++ ..++...+.|.+...++++++.++ +|+....|..-...+.+.+...+..++..++-+.+
T Consensus 89 ~F~el~~~vfa~v~q~----~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~ 164 (591)
T KOG0057|consen 89 VFNELRNFVFAKVAQR----VIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIAL 164 (591)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444 777777888888888888888654 55665555555555544444444444433332222
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHH
Q 000711 238 YTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKF 317 (1338)
Q Consensus 238 ~~~~l~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~ 317 (1338)
.+..+..-.++.+.++++..+...+.++..+...-.+...+..+++.+.....-....|-|.||.||-|+.|.++.....
T Consensus 165 v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l 244 (591)
T KOG0057|consen 165 VSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSL 244 (591)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHH
Confidence 11122222355555554333222222221111111111122223333333333333348999999999999986544443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 318 KALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLS 397 (1338)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~ 397 (1338)
.+..+ ...+.....++.+.+-...+......++... ..| +..+..++|...++. +.+..+-.++..+.
T Consensus 245 ~~~~~---~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~--~~g-i~~~~mtvgdlv~~n------~l~~qL~~~l~~Lg 312 (591)
T KOG0057|consen 245 KTYER---AGLKYSSSLAFLNFGQKAIFSVALTFIMVLG--SNG-IAAGKMTVGDLVMVN------SLLFQLSLPLNFLG 312 (591)
T ss_pred HHHHH---hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH--hhh-hhhccccccchhhHH------HHHHHHHhHHHHHH
Confidence 33332 2233333334333222111211111111111 112 222233565543332 33444445777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCcCCCCcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEE
Q 000711 398 ISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLIT 477 (1338)
Q Consensus 398 ~~~~~l~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~ 477 (1338)
..+..+.+...-..-++.+.+....+. +.+ .......+.|+|+||+|+|++++++|+++||+|++||++||+
T Consensus 313 ~vyr~~~q~l~Dm~~~~~l~~~~~~i~--~~~------~~i~~~~~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIv 384 (591)
T KOG0057|consen 313 SVYRELRQALTDMRTLFILLEVDEDIQ--EAA------LPIELFGGSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIV 384 (591)
T ss_pred HHHHHHHHHHHhHHHHHhhhhhhhhhh--hcc------CCcccCCCcEEEEeeEEEeCCCCceecceeEEecCCCEEEEE
Confidence 777777766554444433322211111 100 011123467999999999998888999999999999999999
Q ss_pred cCCCCcHHHHHHHHcCCCCCCccEEEeCCCC------ccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHH
Q 000711 478 GPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGM 551 (1338)
Q Consensus 478 G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~ 551 (1338)
|+|||||||++|+|.++++ ++|+|++||++ ..+|+.||||||+..||++||.+||.||.+. .+++++
T Consensus 385 G~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~s------as~eeV 457 (591)
T KOG0057|consen 385 GSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPS------ASDEEV 457 (591)
T ss_pred CCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCC------cCHHHH
Confidence 9999999999999999999 99999999987 3578899999999999999999999999764 688999
Q ss_pred HHHHHHcCCchHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCC
Q 000711 552 VELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGT 626 (1338)
Q Consensus 552 ~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~ 626 (1338)
.++++.+++++.+.++|.++.+ +.|..|||||||||+||||++++|+|+++|||||+||.++|+++.+.+.+ .++
T Consensus 458 ~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~r 537 (591)
T KOG0057|consen 458 VEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGR 537 (591)
T ss_pred HHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCC
Confidence 9999999999999999988776 57889999999999999999999999999999999999999999999876 499
Q ss_pred eEEEEecChhhHhhcceEEEccCC
Q 000711 627 SCITISHRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 627 t~i~itH~~~~~~~~d~i~~l~~~ 650 (1338)
|+|+|.||+++++.+|+|++++++
T Consensus 538 TvI~IvH~l~ll~~~DkI~~l~nG 561 (591)
T KOG0057|consen 538 TVIMIVHRLDLLKDFDKIIVLDNG 561 (591)
T ss_pred eEEEEEecchhHhcCCEEEEEECC
Confidence 999999999999999999999984
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-57 Score=520.02 Aligned_cols=207 Identities=28% Similarity=0.374 Sum_probs=188.0
Q ss_pred CCceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccE
Q 000711 1097 QDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGI 1174 (1338)
Q Consensus 1097 ~g~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i 1174 (1338)
+|.|+|+||+|+|++.++||+|+||+|++||||||||+|||||||++++|+||+| .+|+|.|||+||+++ +.+|+-|
T Consensus 349 ~~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~I 427 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSI 427 (591)
T ss_pred CCcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhhe
Confidence 5789999999999988999999999999999999999999999999999999999 999999999999998 5678889
Q ss_pred EEEcCCCCCCCCCHHHHhcCCCc--hHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC-c
Q 000711 1175 FYVPQRPYTCLGTLRDQIIYPLS--REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-N 1251 (1338)
Q Consensus 1175 ~~VpQdP~LF~GTIReNL~~p~~--~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~ 1251 (1338)
++||||..||++||-+||.|+.. ++|++.++||.++ +++.+.++|+||+|.+ +
T Consensus 428 g~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~------------------------~hd~i~~l~~GY~T~VGe 483 (591)
T KOG0057|consen 428 GVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAG------------------------LHDVISRLPDGYQTLVGE 483 (591)
T ss_pred eEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcC------------------------cHHHHHhccccchhhHhh
Confidence 99999999999999999999653 5666667766655 3445667789999988 5
Q ss_pred ccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1252 WEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1252 ~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
+|..||||||||++||||+|++|+|+++|||||+||.+||+.+.+.+.. .++|+|.|+||+++++.+|+++++++|.
T Consensus 484 rG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~ 562 (591)
T KOG0057|consen 484 RGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGT 562 (591)
T ss_pred cccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCe
Confidence 8899999999999999999999999999999999999999998887654 5999999999999999999999997653
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-60 Score=525.06 Aligned_cols=259 Identities=24% Similarity=0.296 Sum_probs=225.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHhhcCCCCCCccCCccCCCCCCCCCCceEEeeeEEeCCCccccc
Q 000711 1037 SVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLA 1116 (1338)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ri~~~~~~~~~~~~~~~~~~~~~~~~wp~~~~~g~I~f~nV~f~yp~~~~vL 1116 (1338)
.++.|+..+++.+...++.++..-.-+|+++++.+.+++..+ .|..-|-...+|.|+|+||+|.|..++|||
T Consensus 483 TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd--------~P~a~pl~~~~G~i~fsnvtF~Y~p~k~vl 554 (790)
T KOG0056|consen 483 TYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVD--------LPGAPPLKVTQGKIEFSNVTFAYDPGKPVL 554 (790)
T ss_pred HHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhc--------CCCCCCccccCCeEEEEEeEEecCCCCcee
Confidence 344577789999999999999888889999998754332211 111113334579999999999998899999
Q ss_pred cccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEEEEcCCCCCCCCCHHHHhcC
Q 000711 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIY 1194 (1338)
Q Consensus 1117 ~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~~VpQdP~LF~GTIReNL~~ 1194 (1338)
+|+||++.||++||+|||||+||||++++|+||||.++|+|.|||+||+.+ ..+|++||+||||.+||+.||-+||.|
T Consensus 555 ~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIry 634 (790)
T KOG0056|consen 555 SDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRY 634 (790)
T ss_pred ecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheee
Confidence 999999999999999999999999999999999999999999999999988 678899999999999999999999999
Q ss_pred --CCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC-cccCCCChhHHHHHHHHHHhh
Q 000711 1195 --PLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFF 1271 (1338)
Q Consensus 1195 --p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlL 1271 (1338)
|.+.+||+.+|+|.|++||.|..+ |+||+|.+ ++|-.||||||||+||||++|
T Consensus 635 ak~~AsneevyaAAkAA~IHdrIl~f------------------------PegY~t~VGERGLkLSGGEKQRVAiARtiL 690 (790)
T KOG0056|consen 635 AKPSASNEEVYAAAKAAQIHDRILQF------------------------PEGYNTRVGERGLKLSGGEKQRVAIARTIL 690 (790)
T ss_pred cCCCCChHHHHHHHHHhhHHHHHhcC------------------------chhhhhhhhhcccccCCcchhhHHHHHHHh
Confidence 556788889999998876554333 66777777 578889999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCcccccceEEEecC
Q 000711 1272 HKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDG 1327 (1338)
Q Consensus 1272 r~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i~~~d~~l~l~~g 1327 (1338)
++|.|++|||||||||..+|++||+.++. +++|.|+||||++||-.+|.+|++.+|
T Consensus 691 K~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G 748 (790)
T KOG0056|consen 691 KAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNG 748 (790)
T ss_pred cCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCC
Confidence 99999999999999999999999987754 699999999999999999999999776
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-59 Score=574.12 Aligned_cols=194 Identities=24% Similarity=0.301 Sum_probs=161.9
Q ss_pred EEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc-------cccccEEEEe
Q 000711 447 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------DLNKEIFYVP 519 (1338)
Q Consensus 447 ~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~-------~~~~~i~~v~ 519 (1338)
++|+++.|+ ++++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. ..++.++|+|
T Consensus 1 ~~nl~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 1 MSNISKSFP-GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred CCceEEEeC-CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 368899885 46899999999999999999999999999999999999999999999998641 1245799999
Q ss_pred cCCCCCC-CCHHHHhcCCCCCC-cc--cCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHcc
Q 000711 520 QRPYTAV-GTLRDQLIYPLTSD-QE--VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1338)
Q Consensus 520 Q~~~l~~-~tl~eni~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~ 595 (1338)
|++.++. .|++||+.++.... .. ......+++.++++.+++.+..++.+ .+||||||||++|||||++
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV--------ATLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred cccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch--------hhCCHHHHHHHHHHHHHHh
Confidence 9997654 59999998764211 00 00111245678888888876666544 6899999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 596 KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 596 ~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
+|+++||||||++||+.+.+.+++.+++ .|+|+|+|||+++.+. .||++++|++
T Consensus 152 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~ 209 (491)
T PRK10982 152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRD 209 (491)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999888754 5899999999999875 7999999986
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-56 Score=603.38 Aligned_cols=529 Identities=17% Similarity=0.183 Sum_probs=362.6
Q ss_pred HHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcC-hh-HHHHHHHHHHHHHHHHHHHHHHH
Q 000711 87 SLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRR-VP-LFFQLISENILLCFLLSTMHSTS 164 (1338)
Q Consensus 87 ~l~~l~~~~~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~ 164 (1338)
++.++++.++|+++. +++.++++++...+....|.+.+.+++.+.... .. ......+.+++++++..++..+.
T Consensus 812 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~ 886 (1466)
T PTZ00265 812 NLRIVYREIFSYKKD-----VTIIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLK 886 (1466)
T ss_pred hHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888887663 445555666777788888999999888776421 11 11111111222222222334445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCC---CCCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000711 165 KYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDG---RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWR 241 (1338)
Q Consensus 165 ~~l~~~l~~~~R~~lt~~l~~~~~~~~~~~~~~~~d~---~~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~ 241 (1338)
.|+..+++.+ +..++|.+.|+++++.+++|||+ ..++..+|+++|++.+.+.+...+..++..++..+ ++..
T Consensus 887 ~~~~~~~~~~----~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i-~~~~ 961 (1466)
T PTZ00265 887 NYYNNVIGEK----VEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFL-VSMV 961 (1466)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 5555555555 88899999999999999999984 35788999999999988777766555554444332 2333
Q ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HH-----------------HHHHHHHHHHHHHHHHhHHHHHHh
Q 000711 242 LCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMS-KE-----------------QQLEGEYRQLHSRLRTHAESIAFY 303 (1338)
Q Consensus 242 l~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~-~~-----------------~~~e~~~r~~~~~i~~~~e~I~~~ 303 (1338)
++++.+|.++++++..+ .++...+.+....... +. ++..++......+...++++|+.|
T Consensus 962 ~~~~~~~~l~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~ 1038 (1466)
T PTZ00265 962 MSFYFCPIVAAVLTGTY---FIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIY 1038 (1466)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHh
Confidence 44556776665543222 2222223332221111 11 112234455566677799999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccccc-CCcchhhHHHHHHHHHHH
Q 000711 304 GGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYH 382 (1338)
Q Consensus 304 ~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~g~~~~~~~~~~~ 382 (1338)
+.|+.+.+++.+..+...+...+ ...+.++...+.........++++ ++++.+. .+..++|.. ++.+.
T Consensus 1039 ~~e~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~----~~G~~lv~~g~it~g~l--~~~~~-- 1107 (1466)
T PTZ00265 1039 GLEDYFCNLIEKAIDYSNKGQKR---KTLVNSMLWGFSQSAQLFINSFAY----WFGSFLIRRGTILVDDF--MKSLF-- 1107 (1466)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCCCHHHH--HHHHH--
Confidence 99999987666655544332222 222223322222111111111222 2333322 223355543 22211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCcCCCCcEEEEeEEEEcCC--CCee
Q 000711 383 TSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT--GNVL 460 (1338)
Q Consensus 383 ~~~~~~~~~~l~~l~~~~~~l~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~--~~~~ 460 (1338)
.+.....++..+...+..+++...+++|++++++.+++.+..+..... ........+.|+|+||+|.||+ ++++
T Consensus 1108 --~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~--~~~~~~~~g~I~f~nVsF~Y~~~~~~~v 1183 (1466)
T PTZ00265 1108 --TFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIR--IKNKNDIKGKIEIMDVNFRYISRPNVPI 1183 (1466)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccc--cccCCCCCceEEEEEEEEECCCCCCCcc
Confidence 111122345667777888999999999999999865543211100000 0000012357999999999985 3589
Q ss_pred eeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCC-------------------------------------------
Q 000711 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL------------------------------------------- 497 (1338)
Q Consensus 461 l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~------------------------------------------- 497 (1338)
|+|+||+|++|+++|||||||||||||+++|+|+|+|
T Consensus 1184 L~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1263 (1466)
T PTZ00265 1184 YKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKE 1263 (1466)
T ss_pred ccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999998
Q ss_pred -----------CccEEEeCCCC------ccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCC
Q 000711 498 -----------VSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDL 560 (1338)
Q Consensus 498 -----------~~G~i~~~~~~------~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l 560 (1338)
++|+|.+||.+ .++|++|+||||+|++|+|||||||.|+.+ ..++++++++++.+++
T Consensus 1264 ~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~------~at~eeI~~A~k~A~l 1337 (1466)
T PTZ00265 1264 GGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE------DATREDVKRACKFAAI 1337 (1466)
T ss_pred cccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCC------CCCHHHHHHHHHHcCC
Confidence 69999999986 357889999999999999999999999854 2578999999999999
Q ss_pred chHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEec
Q 000711 561 EYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISH 633 (1338)
Q Consensus 561 ~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH 633 (1338)
++++.++|.+.++ +.|.+|||||||||||||||+++|+|||||||||+||+++|+.+++.+.+ .++|+|+|||
T Consensus 1338 ~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaH 1417 (1466)
T PTZ00265 1338 DEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAH 1417 (1466)
T ss_pred HHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEec
Confidence 9999999987665 46789999999999999999999999999999999999999999998875 3899999999
Q ss_pred ChhhHhhcceEEEccC
Q 000711 634 RPALVAFHDVVLSLDG 649 (1338)
Q Consensus 634 ~~~~~~~~d~i~~l~~ 649 (1338)
|+++++.||+|++|++
T Consensus 1418 Rlsti~~aD~Ivvl~~ 1433 (1466)
T PTZ00265 1418 RIASIKRSDKIVVFNN 1433 (1466)
T ss_pred hHHHHHhCCEEEEEeC
Confidence 9999999999999987
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-57 Score=583.30 Aligned_cols=463 Identities=16% Similarity=0.164 Sum_probs=314.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-ccchhhcccCCCCCCccchhHHHHHHHHHHHHHHHHHhhH-------
Q 000711 813 FIAPSIRHLTARLALGWRIRMTQHLLKSYLRK-NSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVK------- 884 (1338)
Q Consensus 813 ~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~~-~~ff~~~~~~~~~~~~~~Rls~D~~~l~~~l~~~~~~~i~------- 884 (1338)
+..+...++..++..+...++..++++.+++. ..||+. ...++..+|++ |++.+.+.+......++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~----~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~ 285 (708)
T TIGR01193 211 ILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFST----RRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVI 285 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC----CchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555666666666654 356653 34567889997 787776655543322222
Q ss_pred hHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhcCccccccHHHHHhccchHHHHHHHHhhHHHhhhcCChHHHH
Q 000711 885 PSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREK 964 (1338)
Q Consensus 885 ~~~~i~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~~~~~~e~i~~~~~~~~e~ 964 (1338)
.++.+++++|.++++.. +.+++++++ .....++..+...+..+..+.......+...+.++|++++.+..+.
T Consensus 286 ~~~~l~~~~~~l~li~l----~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~ 357 (708)
T TIGR01193 286 VGLFLVRQNMLLFLLSL----LSIPVYAVI----IILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERY 357 (708)
T ss_pred HHHHHHHHhHHHHHHHH----HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHH
Confidence 12233456666654421 111111111 1122222333444444444445545555666789999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhhhHHHHHHHHHHHHhhcccchhhhchHHHHHHHHHHHHHHHHHHH
Q 000711 965 AMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFL 1044 (1338)
Q Consensus 965 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~~~~~~~~~~~ 1044 (1338)
+.+++.+.+..+...+..+..........++... ...+.++++....... ..+.|.+..+. .+....+.
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~il~~g~~lv~~g--~ls~G~lva~~----~l~~~~~~ 426 (708)
T TIGR01193 358 SKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLI-----LNVVILWTGAYLVMRG--KLTLGQLITFN----ALLSYFLT 426 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHcC--CCCHHHHHHHH----HHHHHHHH
Confidence 7777777766655443332222222211111111 1111122221111010 11344443332 23345667
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHHHHHHhhcCCCCCCccCCccCCCCCCCCCCceEEeeeEEeCCCccccccccceEEe
Q 000711 1045 AFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIV 1124 (1338)
Q Consensus 1045 ~~~~~~~~~~~~~~~~~a~~Ri~~~~~~~~~~~~~~~~~~~~~~~~wp~~~~~g~I~f~nV~f~yp~~~~vL~~lsf~I~ 1124 (1338)
++..+......+.+...+.+|+.++.+.+++.++.. .....+ ...|.|+|+||+|+|++++++|+|+||+|+
T Consensus 427 pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~-----~~~~~~---~~~~~I~~~~vsf~y~~~~~iL~~isl~i~ 498 (708)
T TIGR01193 427 PLENIINLQPKLQAARVANNRLNEVYLVDSEFINKK-----KRTELN---NLNGDIVINDVSYSYGYGSNILSDISLTIK 498 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc-----cccCCC---CCCCcEEEEEEEEEcCCCCcceeceeEEEC
Confidence 888888888889999999999999876543321110 001111 125789999999999877889999999999
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEEEEcCCCCCCCCCHHHHhcCCCchHHHH
Q 000711 1125 PGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAE 1202 (1338)
Q Consensus 1125 ~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~~VpQdP~LF~GTIReNL~~p~~~~~~~ 1202 (1338)
|||++|||||||||||||+++|.|+|+|++|+|++||+|++++ +.+|++|+||||||+||+|||||||.++..
T Consensus 499 ~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~----- 573 (708)
T TIGR01193 499 MNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAK----- 573 (708)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCC-----
Confidence 9999999999999999999999999999999999999999988 467788999999999999999999987521
Q ss_pred HHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC-cccCCCChhHHHHHHHHHHhhcCCCEEEeec
Q 000711 1203 LRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILDE 1281 (1338)
Q Consensus 1203 ~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLDE 1281 (1338)
++..|++++++++.+++.++++++|.||||.+ ++|.+|||||||||+||||++++|+||||||
T Consensus 574 ----------------~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE 637 (708)
T TIGR01193 574 ----------------ENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDE 637 (708)
T ss_pred ----------------CCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 01224455666666677777888899999998 5789999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHh-cCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1282 CTNATSVDVEEQLYRLAKD-MGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1282 ATSaLD~~te~~i~~~~~~-~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
|||+||.++|+.+++.++. .++|+|+||||+++++.+|++++|++|+
T Consensus 638 ~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~~~D~i~~l~~G~ 685 (708)
T TIGR01193 638 STSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQSDKIIVLDHGK 685 (708)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHHcCCEEEEEECCE
Confidence 9999999999999887754 5899999999999999999999998764
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-57 Score=566.38 Aligned_cols=201 Identities=21% Similarity=0.331 Sum_probs=159.3
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCccccccEEEEecCCC
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q~~~ 523 (1338)
.++++|+++.|++++++|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++ +..|+||||+|+
T Consensus 4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----~~~i~~v~Q~~~ 78 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----GIKVGYLPQEPQ 78 (552)
T ss_pred EEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----CCEEEEEeccCC
Confidence 589999999997457899999999999999999999999999999999999999999999875 347999999998
Q ss_pred CCC-CCHHHHhcCCCCCC--------------cccCCC------CHHHHHHHHHHcCCch-------HHhcCCCCccccC
Q 000711 524 TAV-GTLRDQLIYPLTSD--------------QEVEPL------THGGMVELLKNVDLEY-------LLDRYPPEKEINW 575 (1338)
Q Consensus 524 l~~-~tl~eni~~~~~~~--------------~~~~~~------~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~~ 575 (1338)
++. .|++||+.++.... ...... ...++.++++.++..+ .++.+..+.....
T Consensus 79 ~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 158 (552)
T TIGR03719 79 LDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDAD 158 (552)
T ss_pred CCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCc
Confidence 865 59999998753210 000000 0123444455554332 1112111111112
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHccCCeEEEEecChhhHh-hcceEEEccC
Q 000711 576 GDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 576 g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
..+||||||||++|||||+.+|+++||||||++||+.+.+++.+.+++.+.|+|+|||+++.+. .||++++|++
T Consensus 159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~ 233 (552)
T TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDR 233 (552)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEEC
Confidence 4689999999999999999999999999999999999999999999887789999999999876 6899999986
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-57 Score=581.69 Aligned_cols=472 Identities=20% Similarity=0.204 Sum_probs=316.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-ccchhhcccCCCCCCccchhHHHHHHHHHHHHHHHHHhhHhH-
Q 000711 809 AASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRK-NSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPS- 886 (1338)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~~-~~ff~~~~~~~~~~~~~~Rls~D~~~l~~~l~~~~~~~i~~~- 886 (1338)
++..+..+...++..++..+....+..+++++.++- ..||+. ...++..+|++.| +.+...+...+..++..+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~----~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~ 279 (710)
T TIGR03796 205 LLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQ----RHAGDIASRVQLN-DQVAEFLSGQLATTALDAV 279 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC----CcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555566666666666666664 356652 3456788999888 556655544333322222
Q ss_pred ------HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhcCccccccHHHHHhccchHHHHHHHHhhHHHhhhcCCh
Q 000711 887 ------VDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGG 960 (1338)
Q Consensus 887 ------~~i~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~~~~~~e~i~~~~~~ 960 (1338)
+.+++++|.++++. ++.++++++ +.....+.......+.++..+.......+...+.++|+.++.+
T Consensus 280 ~~~~~~~~l~~~~~~l~li~----l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e 351 (710)
T TIGR03796 280 MLVFYALLMLLYDPVLTLIG----IAFAAINVL----ALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLE 351 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCC
Confidence 22345566655442 111111111 1111122222333333333444444445555678999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhhhHHHHHHHHHHHHhhcccchhhhchHHHHHHHHHHHHHHH
Q 000711 961 AREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVS 1040 (1338)
Q Consensus 961 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~~~~~~~ 1040 (1338)
....+.+.+.+.+..+...+..+...+......++..... .+.++++....... ..+.|.+..+. .+..
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~il~~g~~~v~~g--~lt~G~lva~~----~l~~ 420 (710)
T TIGR03796 352 SDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNS-----ALILVVGGLRVMEG--QLTIGMLVAFQ----SLMS 420 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHcC--CCCHHHHHHHH----HHHH
Confidence 8887777777766666544433333222222222221111 11122221110000 01344443332 2344
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHhhcCCCCCCccCCccCCCCCCCCCCceEEeeeEEeCCC-cccccccc
Q 000711 1041 QSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS-QKLLARQL 1119 (1338)
Q Consensus 1041 ~~~~~~~~~~~~~~~~~~~~~a~~Ri~~~~~~~~~~~~~~~~~~~~~~~~wp~~~~~g~I~f~nV~f~yp~-~~~vL~~l 1119 (1338)
....++..+......+.+...+.+|+.++.+.+++.+........... . +.....|.|+|+||+|+||+ .+++|+|+
T Consensus 421 ~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~-~-~~~~~~~~I~~~~vsf~y~~~~~~vL~~i 498 (710)
T TIGR03796 421 SFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGS-E-PSPRLSGYVELRNITFGYSPLEPPLIENF 498 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccc-c-cCCCCCCeEEEEEEEEecCCCCCCcccce
Confidence 556678888888888999999999999987654332111000000000 0 10112578999999999986 57899999
Q ss_pred ceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEEEEcCCCCCCCCCHHHHhcCCCc
Q 000711 1120 TFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLS 1197 (1338)
Q Consensus 1120 sf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~~VpQdP~LF~GTIReNL~~p~~ 1197 (1338)
||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||.|++++ ..+|++|+||||||+||+|||||||.++.+
T Consensus 499 sl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~ 578 (710)
T TIGR03796 499 SLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDP 578 (710)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCC
Confidence 999999999999999999999999999999999999999999999987 456789999999999999999999986421
Q ss_pred hHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC-cccCCCChhHHHHHHHHHHhhcCCCE
Q 000711 1198 REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKF 1276 (1338)
Q Consensus 1198 ~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~I 1276 (1338)
+..|++++++++.++++++++++|+||||.+ ++|.+||||||||||||||++++|+|
T Consensus 579 ----------------------~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~i 636 (710)
T TIGR03796 579 ----------------------TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSI 636 (710)
T ss_pred ----------------------CCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCE
Confidence 1234556667777777788888899999998 57899999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHhcCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1277 GILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1277 LiLDEATSaLD~~te~~i~~~~~~~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
|||||||||||.++|+.+.+.+++.++|+|+||||+++++.+|++++|++|+
T Consensus 637 liLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~~D~Iivl~~G~ 688 (710)
T TIGR03796 637 LILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRDCDEIIVLERGK 688 (710)
T ss_pred EEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeCCE
Confidence 9999999999999999998887778999999999999999999999997763
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-58 Score=571.20 Aligned_cols=189 Identities=22% Similarity=0.247 Sum_probs=162.5
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc------cccccEEE
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------DLNKEIFY 517 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~~~~~i~~ 517 (1338)
.|+++|+++.|++ +++|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+. ..++.++|
T Consensus 3 ~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 3 SLQISQGTFRLSD-TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred eEEEEeEEEEcCC-eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 4899999999964 5699999999999999999999999999999999999999999999987531 12346999
Q ss_pred EecCCCC--C-------CCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHH
Q 000711 518 VPQRPYT--A-------VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1338)
Q Consensus 518 v~Q~~~l--~-------~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRla 588 (1338)
++|++.+ + ..|+++|+.++. ..++++.++++.+++++..++.+ .+||||||||++
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~ 145 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEV--------KDPARCEQLAQQFGITALLDRRF--------KYLSTGETRKTL 145 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccch--------hHHHHHHHHHHHcCCHhhhhCCc--------ccCCHHHHHHHH
Confidence 9998753 1 348888876531 12456788999999988877766 689999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 589 lARal~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
|||||+.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+. .||++++|++
T Consensus 146 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~ 210 (490)
T PRK10938 146 LCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLAD 210 (490)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEEC
Confidence 99999999999999999999999999999988765 3899999999998774 7999999986
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-56 Score=508.66 Aligned_cols=527 Identities=21% Similarity=0.237 Sum_probs=373.7
Q ss_pred HHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcChhHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 000711 91 LAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCF---LLSTMHSTSKYI 167 (1338)
Q Consensus 91 l~~~~~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l 167 (1338)
++.+++|+++ .+ +.+.+.+++.++....+..+=...|.|+.+-.-..... +..+++-.. ...+...+.+|.
T Consensus 4 l~p~i~l~~~-~~-~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~----~f~~~~p~a~VR~~aI~Rt~~RY~ 77 (573)
T COG4987 4 LLPYLRLYKR-HK-FGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAY----IFNVMLPSAGVRGLAILRTAARYV 77 (573)
T ss_pred chHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777766 22 22455555556666666777788899887655333321 111111111 223446778999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccCC-CCCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc
Q 000711 168 TGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYA 246 (1338)
Q Consensus 168 ~~~l~~~~R~~lt~~l~~~~~~~~~~~~~~~~d~-~~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~ 246 (1338)
+...+..+--++..++|.+.|++..-........ +.++...|+++||+.+.+.+...+.+.+.+++.+......+ .++
T Consensus 78 ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L-~f~ 156 (573)
T COG4987 78 ERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGL-SFF 156 (573)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHH-HHh
Confidence 9999999888899999999999887665554433 57799999999999999999998888777665554433333 345
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Q 000711 247 SPKYVFWILAYVLGAGTMMRNFSP-AFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMR 325 (1338)
Q Consensus 247 ~~~l~~~~l~~~~~~~~~~~~~~~-~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~ 325 (1338)
+|.+++.+..+..+..+++.++.. .-++.+.+..+..+.+|........+.....+||.++...+.+...-+...+..+
T Consensus 157 ~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~ 236 (573)
T COG4987 157 SIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQR 236 (573)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHH
Confidence 777666655544444444444433 3333445555566677776666666766789999999988665554444444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 000711 326 VVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLS-ISSRRLN 404 (1338)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~l~ 404 (1338)
+..+...+.+.+..++ .+..+... ..|+++....+..+.- ...+. .-.+...+.++..++ ..+..++
T Consensus 237 k~~~~~~~~~a~~~l~---~g~~v~~~---l~w~a~~~~~G~~~~~-~aa~~-----ll~~f~~~eaf~~L~~~A~~~lg 304 (573)
T COG4987 237 KQARFTGLSDAILLLI---AGLLVIGL---LLWMAAQVGAGALAQP-GAALA-----LLVIFAALEAFEPLAPGAFQHLG 304 (573)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHH---HHHHHhcCcCCCcchh-HHHHH-----HHHHHHHHHHHhhhcchhHHHhh
Confidence 3333222222222111 11111111 1133333322222211 11111 112234445555555 6667889
Q ss_pred HHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCcCCCCcEEEEeEEEEcCCCC-eeeeeeeEEEeCCCEEEEEcCCCCc
Q 000711 405 RLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGN-VLVENLTLKVEPGSNLLITGPNGSG 483 (1338)
Q Consensus 405 ~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~-~~l~~~sl~i~~G~~~~i~G~sGsG 483 (1338)
+...++.|+.++.+.+++...++.. .......++++||+|.||+.+ ++|+|+||++++||+++|+|+||||
T Consensus 305 q~~~Sa~Rl~~i~~q~~e~~~~~~~--------~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsG 376 (573)
T COG4987 305 QVIASARRLNDILDQKPEVTFPDEQ--------TATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSG 376 (573)
T ss_pred HHHHHHHHHhhhccCCcccCCCccc--------cCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCC
Confidence 9999999999988776654322110 111122799999999999865 8999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCccEEEeCCCC------ccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHH
Q 000711 484 KSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKN 557 (1338)
Q Consensus 484 KSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~ 557 (1338)
||||+++|.|-|+|++|+|..+|.+ +++++.+++++|++++|++|+|||+....++ .+|+++++++++
T Consensus 377 KSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~------AsDEel~~aL~q 450 (573)
T COG4987 377 KSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPD------ASDEELWAALQQ 450 (573)
T ss_pred HHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCC------CCHHHHHHHHHH
Confidence 9999999999999999999999975 2367789999999999999999999998653 689999999999
Q ss_pred cCCchHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEe
Q 000711 558 VDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITIS 632 (1338)
Q Consensus 558 ~~l~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~it 632 (1338)
+||++++...|.+..+ +.|..||||||||++|||+|+++.++++|||||.+||+.+|+++++.+.+ .|+|+|+||
T Consensus 451 vgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vT 530 (573)
T COG4987 451 VGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVT 530 (573)
T ss_pred cCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEe
Confidence 9999999998865443 56899999999999999999999999999999999999999999999876 499999999
Q ss_pred cChhhHhhcceEEEccCC
Q 000711 633 HRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 633 H~~~~~~~~d~i~~l~~~ 650 (1338)
||+..++.+|+|++|+++
T Consensus 531 HrL~~le~~drIivl~~G 548 (573)
T COG4987 531 HRLRGLERMDRIIVLDNG 548 (573)
T ss_pred cccccHhhcCEEEEEECC
Confidence 999999999999999973
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-56 Score=554.83 Aligned_cols=506 Identities=16% Similarity=0.160 Sum_probs=368.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 000711 115 VLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYY 194 (1338)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~R~~lt~~l~~~~~~~~~~~ 194 (1338)
++...+.+..|.+.+.++|.+..+.... .. ++.+++++++..++..+..|+..++..+....+..+++.++++++...
T Consensus 5 ~~~~~~~~~~p~~~~~iid~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~ 82 (569)
T PRK10789 5 IIIAMLQLIPPKVVGIIVDGVTEQHMTT-GQ-ILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQ 82 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcch-hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444555677888888888776442211 11 122222222333344556677777777777778999999999999999
Q ss_pred cccccCCC-CCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhhhHH
Q 000711 195 KISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFG 273 (1338)
Q Consensus 195 ~~~~~d~~-~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 273 (1338)
+.+++++. .++..+|+++|++.+...+...+..++..++..+.+.+.++.+++|.+++++++.+++..++..++.++..
T Consensus 83 ~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~ 162 (569)
T PRK10789 83 HPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLH 162 (569)
T ss_pred CHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998754 67999999999999876555555555554443333333333457888887777666666666666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 274 KLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVIL 353 (1338)
Q Consensus 274 ~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (1338)
+...+.++..+++.....+...++++||.|+.|+.+.+++.+..++..+...+..+ ..+................++
T Consensus 163 ~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l 239 (569)
T PRK10789 163 ERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVAR---IDARFDPTIYIAIGMANLLAI 239 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777789999999999999997777766655443333222 222222211111111111111
Q ss_pred HHHhHhccccc-CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCC
Q 000711 354 IIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQR 432 (1338)
Q Consensus 354 ~~~~~~~g~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~ri~~~~~~~~~~~~~~~~~~~ 432 (1338)
+ +++.+. .+..+.|.. ++. ..+...++.++..+...+..+++...+.+|+.++++.+++.+....
T Consensus 240 ~----~g~~lv~~g~lt~g~l--~a~----~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~---- 305 (569)
T PRK10789 240 G----GGSWMVVNGSLTLGQL--TSF----VMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSE---- 305 (569)
T ss_pred H----HHHHHHHcCCcCHHHH--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCC----
Confidence 1 111111 122355543 222 2233445567777888888999999999999999876543211100
Q ss_pred CCCCCCcCCCCcEEEEeEEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC---
Q 000711 433 NGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--- 508 (1338)
Q Consensus 433 ~~~~~~~~~~~~i~~~~v~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~--- 508 (1338)
......+.|+++||+|.|+++ +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 306 ----~~~~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~ 381 (569)
T PRK10789 306 ----PVPEGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTK 381 (569)
T ss_pred ----CCCCCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhh
Confidence 001123569999999999864 689999999999999999999999999999999999999999999999975
Q ss_pred ---ccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccc---cCCCCCChh
Q 000711 509 ---SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLG 582 (1338)
Q Consensus 509 ---~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgG 582 (1338)
.+++++++|+||+|++|++|++|||.++.+. .+++++.++++.+++++++.++|.+.++ +.|.+||||
T Consensus 382 ~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~------~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgG 455 (569)
T PRK10789 382 LQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPD------ATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGG 455 (569)
T ss_pred CCHHHHHhheEEEccCCeeccccHHHHHhcCCCC------CCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHH
Confidence 2456789999999999999999999987532 4778999999999999999999876554 468899999
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhHhhcceEEEccC
Q 000711 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 649 (1338)
Q Consensus 583 qkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~~~~d~i~~l~~ 649 (1338)
||||++||||++++|+++|||||||+||+++++.+++.+++ .++|+|+||||++.++.+|+|++|++
T Consensus 456 q~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~ 524 (569)
T PRK10789 456 QKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQH 524 (569)
T ss_pred HHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeC
Confidence 99999999999999999999999999999999999999876 58999999999999999999999986
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-56 Score=559.06 Aligned_cols=461 Identities=21% Similarity=0.236 Sum_probs=311.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-ccchhhcccCCCCCCccchhHHHHHHHHHHHHHHHHHhhHh-------
Q 000711 814 IAPSIRHLTARLALGWRIRMTQHLLKSYLRK-NSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKP------- 885 (1338)
Q Consensus 814 ~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~~-~~ff~~~~~~~~~~~~~~Rls~D~~~l~~~l~~~~~~~i~~------- 885 (1338)
..+...++..+.+.+...++..+++++.++. ..||+. ...++..+|+++|++.+...+...+..++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~----~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~ 151 (574)
T PRK11160 76 GRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLAR----YRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVL 151 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhcc----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444455555555555543 355553 2346788999999999988766544443322
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhcCccccccHHHHHhccchHHHHHHHHhhHHHhhhcCChHHHHH
Q 000711 886 SVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKA 965 (1338)
Q Consensus 886 ~~~i~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~~~~~~e~i~~~~~~~~e~~ 965 (1338)
++.+++++|.++++... .+.+..++...+... .......+.++..+.+.....+...+.++++.|+.++.+.+
T Consensus 152 ~~~l~~~~~~l~l~~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~ 224 (574)
T PRK11160 152 TIGLSFFDLTLALTLGG----ILLLLLLLLPLLFYR---LGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQ 224 (574)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHH
Confidence 23334667777654311 111111111111111 11222333444444555555566667899999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhhhHHHHHHHHHHHHhhcccchhhhchHHHHHHHHHHHHHHHHHHHH
Q 000711 966 MIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLA 1045 (1338)
Q Consensus 966 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~~~~~~~~~~~~ 1045 (1338)
.+++..++..+...+..+...+......++.. +...+.++++.....+ . .+.|.+..++.+.... ...+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~g~~~~~g-~--~t~g~l~a~~~~~~~~---~~~~ 293 (574)
T PRK11160 225 QLEQTEQQWLAAQRRQANLTGLSQALMILANG-----LTVVLMLWLAAGGVGG-N--AQPGALIALFVFAALA---AFEA 293 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcc-c--cchhHHHHHHHHHHHH---HHHH
Confidence 88777777666555444333322222222211 1112222222221111 0 1234443333222111 1234
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHHHHHHhhcCCCCCCccCCccCCCCCCCCCCceEEeeeEEeCCCc-cccccccceEEe
Q 000711 1046 FGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQ-KLLARQLTFEIV 1124 (1338)
Q Consensus 1046 ~~~~~~~~~~~~~~~~a~~Ri~~~~~~~~~~~~~~~~~~~~~~~~wp~~~~~g~I~f~nV~f~yp~~-~~vL~~lsf~I~ 1124 (1338)
+..+......+.+...+.+|+.++.+.+++.+.+ .... . ....+.|+|+||+|+||+. +++|+|+||+|+
T Consensus 294 ~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~----~~~~--~---~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~ 364 (574)
T PRK11160 294 LMPVAGAFQHLGQVIASARRINEITEQKPEVTFP----TTST--A---AADQVSLTLNNVSFTYPDQPQPVLKGLSLQIK 364 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC----cccC--C---CCCCCeEEEEEEEEECCCCCCcceecceEEEC
Confidence 4555666677788888999999987654321110 0000 0 1125789999999999864 689999999999
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEEEEcCCCCCCCCCHHHHhcCCCchHHHH
Q 000711 1125 PGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAE 1202 (1338)
Q Consensus 1125 ~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~~VpQdP~LF~GTIReNL~~p~~~~~~~ 1202 (1338)
|||++|||||||||||||+++|.|+|+|++|+|.+||+|++++ ..+|++|+||||||+||+|||||||.++.+
T Consensus 365 ~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~----- 439 (574)
T PRK11160 365 AGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAP----- 439 (574)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCC-----
Confidence 9999999999999999999999999999999999999999987 456778999999999999999999987532
Q ss_pred HHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC-cccCCCChhHHHHHHHHHHhhcCCCEEEeec
Q 000711 1203 LRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILDE 1281 (1338)
Q Consensus 1203 ~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLDE 1281 (1338)
+..|++++++++.+++++++++ |+||||.+ ++|.+||||||||+|||||++++|+||||||
T Consensus 440 -----------------~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE 501 (574)
T PRK11160 440 -----------------NASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDE 501 (574)
T ss_pred -----------------ccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 1235567777888888888999 99999998 5789999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1282 CTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1282 ATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
|||+||.++|+.+++.++. .++|+|+||||+++++.+|++++|++|+
T Consensus 502 ~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~ 550 (574)
T PRK11160 502 PTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQ 550 (574)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCe
Confidence 9999999999999887754 4899999999999999999999998764
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-56 Score=564.34 Aligned_cols=191 Identities=23% Similarity=0.288 Sum_probs=156.1
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCccccccEEEEecCCCC
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYT 524 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q~~~l 524 (1338)
|+++||++.|. ++++|+|+||+|++|++++|+||||||||||+|+|+|+.+|++|+|.++|. ..++|++|++..
T Consensus 2 i~i~nls~~~g-~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~-----~~i~~~~q~~~~ 75 (638)
T PRK10636 2 IVFSSLQIRRG-VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN-----WQLAWVNQETPA 75 (638)
T ss_pred EEEEEEEEEeC-CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----CEEEEEecCCCC
Confidence 78999999995 578999999999999999999999999999999999999999999999873 258999997644
Q ss_pred CCCCHHHHhcCCCC---------------CC------------cccCCCCHHHHHHHHHHcCCc-hHHhcCCCCccccCC
Q 000711 525 AVGTLRDQLIYPLT---------------SD------------QEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWG 576 (1338)
Q Consensus 525 ~~~tl~eni~~~~~---------------~~------------~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~g 576 (1338)
+..|+.+.+.-+.. .. .......+.++.++++.+|+. +..++.+
T Consensus 76 ~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~-------- 147 (638)
T PRK10636 76 LPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPV-------- 147 (638)
T ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCch--------
Confidence 44555544321100 00 000011234677788888886 4555543
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHccCCeEEEEecChhhHh-hcceEEEccC
Q 000711 577 DELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 577 ~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
.+||||||||++|||||+.+|++|||||||++||+.+..++.+.+++.+.|+|+|||+...+. .||++++|++
T Consensus 148 ~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~ 221 (638)
T PRK10636 148 SDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQ 221 (638)
T ss_pred hhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeC
Confidence 689999999999999999999999999999999999999999999988889999999999875 7899999986
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-56 Score=570.47 Aligned_cols=462 Identities=18% Similarity=0.189 Sum_probs=312.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-cchhhcccCCCCCCccchhHHHHHHHHHHHHHHHHHhhH------
Q 000711 812 SFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVK------ 884 (1338)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~~~-~ff~~~~~~~~~~~~~~Rls~D~~~l~~~l~~~~~~~i~------ 884 (1338)
.+..+...++..++..+...++...++++.++-+ .| + ....++..+|+ +|++.+...+...+..++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~----~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~ 274 (694)
T TIGR03375 201 FVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEA-R----PASVGSFANQL-REFESVRDFFTSATLTALIDLPFAL 274 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-C----CCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444444444445555555555555555555533 33 2 22456778898 7998888766543322222
Q ss_pred -hHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhcCccccccHHHHHhccchHHHHHHHHhhHHHhhhcCChHHH
Q 000711 885 -PSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGARE 963 (1338)
Q Consensus 885 -~~~~i~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~~~~~~e~i~~~~~~~~e 963 (1338)
.++.+++++|.++++.. +.+++++++ .....++......+..+..+.......+...+.++|+.|+.+..+
T Consensus 275 ~~~~~l~~~~~~l~li~l----~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~ 346 (694)
T TIGR03375 275 LFLLVIAIIGGPLVWVPL----VAIPLILLP----GLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRF 346 (694)
T ss_pred HHHHHHHHHHhHHHHHHH----HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHH
Confidence 22233455666654421 111111111 112222233334444444444444455556678999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhhhHHHHHHHHHHHHhhcccchhhhchHHHHHHHHHHHHHHHHHH
Q 000711 964 KAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSF 1043 (1338)
Q Consensus 964 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~~~~~~~~~~ 1043 (1338)
.+.+++.+.+..+...+..+...+...+..++.. +...+.++++....... ..+.|.+..+. .+.....
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~il~~g~~~v~~g--~ls~G~l~a~~----~~~~~~~ 415 (694)
T TIGR03375 347 QRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQ-----LVSVAIVVVGVYLISDG--ELTMGGLIACV----MLSGRAL 415 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcC--CCCHHHHHHHH----HHHHHHH
Confidence 7777777766655444433333222222111111 11111122221111010 12344443333 2334556
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHHHHHHhhcCCCCCCccCCccCCCCCCCCCCceEEeeeEEeCCC-ccccccccceE
Q 000711 1044 LAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS-QKLLARQLTFE 1122 (1338)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~a~~Ri~~~~~~~~~~~~~~~~~~~~~~~~wp~~~~~g~I~f~nV~f~yp~-~~~vL~~lsf~ 1122 (1338)
.++..+......+.+...+.+|+.++.+.+++.++.. . .. +.....|.|+|+||+|+||+ .+++|+|+||+
T Consensus 416 ~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~----~--~~--~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~ 487 (694)
T TIGR03375 416 APLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGT----R--FL--HRPRLQGEIEFRNVSFAYPGQETPALDNVSLT 487 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC----C--CC--CCCCccceEEEEEEEEEeCCCCccceeeeeEE
Confidence 6778888888888999999999999876543221100 0 00 01112578999999999985 56899999999
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEEEEcCCCCCCCCCHHHHhcCCCchHH
Q 000711 1123 IVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREE 1200 (1338)
Q Consensus 1123 I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~~VpQdP~LF~GTIReNL~~p~~~~~ 1200 (1338)
|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|++++ ..+|++|+||||||++|+|||||||.++.+
T Consensus 488 i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~--- 564 (694)
T TIGR03375 488 IRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAP--- 564 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCC---
Confidence 999999999999999999999999999999999999999999987 456789999999999999999999987532
Q ss_pred HHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC-cccCCCChhHHHHHHHHHHhhcCCCEEEe
Q 000711 1201 AELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGIL 1279 (1338)
Q Consensus 1201 ~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiL 1279 (1338)
+..|++++++++.+++.++++.+|+||||.+ ++|.+||||||||||||||++++|+|+||
T Consensus 565 -------------------~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliL 625 (694)
T TIGR03375 565 -------------------YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLL 625 (694)
T ss_pred -------------------CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 1234556666777777788888899999998 58899999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1280 DECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1280 DEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
|||||+||+++|+.+++.+++ .++|+|+||||+++++.+|++++|++|+
T Consensus 626 DE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~ 676 (694)
T TIGR03375 626 DEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGR 676 (694)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCE
Confidence 999999999999999887754 4899999999999999999999997763
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-56 Score=560.31 Aligned_cols=453 Identities=17% Similarity=0.246 Sum_probs=309.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccc-cchhhcccCCCCCCccchhHHHHHHHHHHHHHHHHHhhHh-------HHHHHH
Q 000711 820 HLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKP-------SVDILW 891 (1338)
Q Consensus 820 ~~~~~~~~~~r~~l~~~l~~~~l~~~-~ff~~~~~~~~~~~~~~Rls~D~~~l~~~l~~~~~~~i~~-------~~~i~~ 891 (1338)
++..++.......+...+++.+++.+ .+|+ ....++..+|+++|++.+...+...+..++.. ++.+++
T Consensus 87 ~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~----~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (582)
T PRK11176 87 YCISWVSGKVVMTMRRRLFGHMMGMPVSFFD----KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFY 162 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHhC----CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445555555555432 4443 22446688999999998877665444433322 222344
Q ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHHhcCccccccHHHHHhccchHHHHHHHHhhHHHhhhcCChHHHHHHHHHHH
Q 000711 892 FTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRF 971 (1338)
Q Consensus 892 ~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~~~~~~e~i~~~~~~~~e~~~~~~~~ 971 (1338)
++|.++++.. +.+++.........++......+.++..+.......+...+.++++.|+.++.+.+.+++..
T Consensus 163 ~~~~l~l~~l--------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~ 234 (582)
T PRK11176 163 YSWQLSLILI--------VIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVS 234 (582)
T ss_pred HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHH
Confidence 5666544321 11111111122222233333344444444444444555567889999999888888777777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHhhhhhHHHHHHHHHHHHh--hcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 972 RELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAME--HKGDRALVSTQGELAHALRFLASVVSQSFLAFGDI 1049 (1338)
Q Consensus 972 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~l~~~l~~~~~~~~~~~~~~~~~ 1049 (1338)
++..+...+..+...+......++... ...+.++++.. ..+. .+.|.+..+.. .....+.++..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~g~~~~~~g~----is~g~~~~~~~----~~~~~~~pl~~l 301 (582)
T PRK11176 235 NRMRQQGMKMVSASSISDPIIQLIASL-----ALAFVLYAASFPSVMDT----LTAGTITVVFS----SMIALMRPLKSL 301 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHcCC----CCHHHHHHHHH----HHHHHHHHHHHH
Confidence 776665554444333333222222111 11111111111 1111 13344433322 233455677888
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHHHhhcCCCCCCccCCccCCCCCCCCCCceEEeeeEEeCCC-ccccccccceEEeCCCE
Q 000711 1050 LELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS-QKLLARQLTFEIVPGKS 1128 (1338)
Q Consensus 1050 ~~~~~~~~~~~~a~~Ri~~~~~~~~~~~~~~~~~~~~~~~~wp~~~~~g~I~f~nV~f~yp~-~~~vL~~lsf~I~~Gek 1128 (1338)
......+.....+.+|+.++.+.+++.+.. . ...+. ..+.|+|+||+|.||+ .+++|+|+||+|+|||+
T Consensus 302 ~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~------~--~~~~~--~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~ 371 (582)
T PRK11176 302 TNVNAQFQRGMAACQTLFAILDLEQEKDEG------K--RVIER--AKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKT 371 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCCC------C--cCCCC--CCCeEEEEEEEEecCCCCCccccCceEEeCCCCE
Confidence 888888888888999999887543221110 0 01111 2467999999999986 47899999999999999
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEEEEcCCCCCCCCCHHHHhcCCCchHHHHHHHH
Q 000711 1129 LLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRAL 1206 (1338)
Q Consensus 1129 vaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~~VpQdP~LF~GTIReNL~~p~~~~~~~~~a~ 1206 (1338)
+||||+||||||||+++|+|+|+|++|+|.+||+|++++ ..+|++|+||||||++|+|||||||.++.+.
T Consensus 372 ~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~-------- 443 (582)
T PRK11176 372 VALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTE-------- 443 (582)
T ss_pred EEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCC--------
Confidence 999999999999999999999999999999999999987 3556789999999999999999999875321
Q ss_pred hhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC-cccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCC
Q 000711 1207 KLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNA 1285 (1338)
Q Consensus 1207 ~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSa 1285 (1338)
+..|++++++++.+++.++++++|+||||.+ ++|.+||||||||||||||++++|+||||||||||
T Consensus 444 -------------~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsa 510 (582)
T PRK11176 444 -------------QYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSA 510 (582)
T ss_pred -------------CCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECcccc
Confidence 1235667777788888888999999999997 57889999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHh--cCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1286 TSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1286 LD~~te~~i~~~~~~--~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
||.++|+.+.+.++. .++|+|+||||+++++.+|++++|++|+
T Consensus 511 LD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~ 555 (582)
T PRK11176 511 LDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGE 555 (582)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCE
Confidence 999999998877654 5899999999999999999999997764
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-55 Score=543.40 Aligned_cols=506 Identities=17% Similarity=0.204 Sum_probs=365.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh-cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFL-RRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHT 185 (1338)
Q Consensus 107 l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~R~~lt~~l~~ 185 (1338)
++..+++.++...+.+..|...+.++|.+.. .+...++. ++++.+++.++..+..|+..++..+.-..+..+++.
T Consensus 8 ~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 83 (544)
T TIGR01842 8 FIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLM----LTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQ 83 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556667777778888999999999987763 33322222 222222233334455666666666666668888999
Q ss_pred HHhcccccccccccCCCCCCchhHHHccHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHH
Q 000711 186 RYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSE-LVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTM 264 (1338)
Q Consensus 186 ~~~~~~~~~~~~~~d~~~~n~~qRit~Di~~~~~~~~~-l~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~l~~~~~~~~~ 264 (1338)
+++++..+.+++. .++...++++|++.+.+.+.. .+..++..++.. .+.. ++++++|.+++++++.+++..++
T Consensus 84 ~~~~~ll~~~~~~----~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~-~~~~-~l~~~~~~l~li~l~~~~l~~~i 157 (544)
T TIGR01842 84 PIFAASFSATLRR----GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMP-IYLL-VCFLLHPWIGILALGGAVVLVGL 157 (544)
T ss_pred HHHHHHhcCcccC----ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHH-HHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999988888642 245578999999998776655 333333333322 2222 34566888877766555544444
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 265 MRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKY 344 (1338)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (1338)
..++.+...+...+.++..++......+..+++++||.|+.|+.+.+++.+.+++..+...+..+..........++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 235 (544)
T TIGR01842 158 ALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFR-- 235 (544)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 444556666666666677777777777878899999999999999988888777766554433222222222111111
Q ss_pred HHHHHHHHHHHHhHhccccc-CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 000711 345 LGATVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISREL 423 (1338)
Q Consensus 345 ~~~~~~~~~~~~~~~~g~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~ri~~~~~~~~~~ 423 (1338)
......+++ +++.+. .+..+.|.. ++. ..++..++.++..+...+..+++...+.+|+.++++.+++.
T Consensus 236 -~~~~~~~~~----~g~~l~~~g~it~g~l--~a~----~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~ 304 (544)
T TIGR01842 236 -IVLQSLVLG----LGAYLAIDGEITPGMM--IAG----SILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSR 304 (544)
T ss_pred -HHHHHHHHH----HHHHHHHcCCCCHHHH--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 111111111 112111 223355543 222 23445566788888889999999999999999998765432
Q ss_pred cccCCCCCCCCCCCCcCCCCcEEEEeEEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEE
Q 000711 424 SIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502 (1338)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i 502 (1338)
.. .. . .....+.++++||+|.||++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|
T Consensus 305 ~~-~~--~------~~~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i 375 (544)
T TIGR01842 305 DP-AM--P------LPEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSV 375 (544)
T ss_pred cC-CC--C------CCCCCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 11 00 0 01123569999999999864 689999999999999999999999999999999999999999999
Q ss_pred EeCCCC------ccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccc---
Q 000711 503 AKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI--- 573 (1338)
Q Consensus 503 ~~~~~~------~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~--- 573 (1338)
.++|.+ ..+++.++||||+|++|++|++|||.++.+ ..+++++.++++.++++++++++|.+.++
T Consensus 376 ~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~------~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~ 449 (544)
T TIGR01842 376 RLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGE------NADPEKIIEAAKLAGVHELILRLPDGYDTVIG 449 (544)
T ss_pred EECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCC------CCCHHHHHHHHHHhChHHHHHhCccccccccC
Confidence 999965 235678999999999999999999987542 25678999999999999999999875443
Q ss_pred cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHhhcceEEEccCC
Q 000711 574 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 574 ~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~~~d~i~~l~~~ 650 (1338)
++|.+||||||||++||||++++|+++|||||||+||+++++.+.+.+++ .++|+|+||||++.+..+|+|++|+++
T Consensus 450 ~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G 529 (544)
T TIGR01842 450 PGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDG 529 (544)
T ss_pred CCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECC
Confidence 46889999999999999999999999999999999999999999998865 379999999999999999999999863
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-57 Score=499.86 Aligned_cols=199 Identities=27% Similarity=0.381 Sum_probs=162.8
Q ss_pred CcEEEEeEEEEcC--C-CCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCC-----CccEEEeCCCC------
Q 000711 443 NYIEFSGVKVVTP--T-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG------ 508 (1338)
Q Consensus 443 ~~i~~~~v~~~~~--~-~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~-----~~G~i~~~~~~------ 508 (1338)
..++++|+++.+. + ...+++++||+|++||.++|||+||||||-..+.++|+++. -+|+|.++|.+
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred cceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence 4588899887553 2 35899999999999999999999999999999999999975 47899999976
Q ss_pred cc---cc-ccEEEEecCCCC---CCCCHHHHhcCCCCCCc-ccCCCCHHHHHHHHHHcCCch---HHhcCCCCccccCCC
Q 000711 509 SD---LN-KEIFYVPQRPYT---AVGTLRDQLIYPLTSDQ-EVEPLTHGGMVELLKNVDLEY---LLDRYPPEKEINWGD 577 (1338)
Q Consensus 509 ~~---~~-~~i~~v~Q~~~l---~~~tl~eni~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~~~~g~ 577 (1338)
.+ +| .+|++++|+|.. |--||..+|.-+..... .......+++.++|+.+|+.+ .++.+| .
T Consensus 85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yP--------H 156 (534)
T COG4172 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYP--------H 156 (534)
T ss_pred HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCC--------c
Confidence 11 22 479999999964 23477777653321111 112234578889999999965 455667 6
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 578 ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 578 ~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
+||||||||+.||.||..+|++||.||||.|||.....+|.+.+++ .|+.+++||||+..++ ++|+|++|..
T Consensus 157 eLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~ 233 (534)
T COG4172 157 ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQH 233 (534)
T ss_pred ccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEec
Confidence 8999999999999999999999999999999999999999998864 5999999999999986 7999999986
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-55 Score=550.83 Aligned_cols=462 Identities=17% Similarity=0.186 Sum_probs=310.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-ccchhhcccCCCCCCccchhHHHHHHHHHHHHHHHHHhhHh
Q 000711 807 QSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRK-NSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKP 885 (1338)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~~-~~ff~~~~~~~~~~~~~~Rls~D~~~l~~~l~~~~~~~i~~ 885 (1338)
..++..+..+...++..++..+...++..++++++++. ..||+. ...++..+|+++|++.+...+...+..++..
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~----~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~ 128 (529)
T TIGR02857 53 AVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAALGPGWLQG----RPSGELATLALEGVEALDGYFARYLPQLVLA 128 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhcc----CChHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33334444455555555555555556666666666654 356652 3456788999999999887665433333222
Q ss_pred -------HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhcCccccccHHHHHhccchHHHHHHHHhhHHHhhhcC
Q 000711 886 -------SVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFG 958 (1338)
Q Consensus 886 -------~~~i~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~~~~~~e~i~~~~ 958 (1338)
++.+++++|.++++.. +..+ +...+.....+.......+.++..+.......+...+.++|+.|+
T Consensus 129 ~~~~~~~~~~l~~~~~~l~~~~l-----~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~ 200 (529)
T TIGR02857 129 VIIPLAILAAVFPADWISGLILL-----LTAP---LIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFG 200 (529)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH-----HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHcc
Confidence 2223445665544321 1111 111111111122222233333333444444455556789999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhhhHHHHHHHHHHHHh-hcccchhhhchHHHHHHHHHHHH
Q 000711 959 GGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAME-HKGDRALVSTQGELAHALRFLAS 1037 (1338)
Q Consensus 959 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~l~~~~~ 1037 (1338)
.++.+.+.+++..++..+......+...+......++..... ....++.+.. ..+. .+.|.+..+. .
T Consensus 201 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~----~t~g~~~~~~----~ 268 (529)
T TIGR02857 201 RAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSV----ALVAVYIGFRLLAGD----LDLATGLFVL----L 268 (529)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHcCC----CCHHHHHHHH----H
Confidence 988887777666666555444333333222222222111110 0111111111 1111 1233333222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHhhcCCCCCCccCCccCCCCCCCCCCceEEeeeEEeCCCc-cccc
Q 000711 1038 VVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQ-KLLA 1116 (1338)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~~~~~~~~a~~Ri~~~~~~~~~~~~~~~~~~~~~~~~wp~~~~~g~I~f~nV~f~yp~~-~~vL 1116 (1338)
+......++..+......+.....+.+|+.++.+.+++.. ... +...+. .+.|+|+||+|.||+. +++|
T Consensus 269 ~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~-----~~~--~~~~~~---~~~i~~~~v~f~y~~~~~~il 338 (529)
T TIGR02857 269 LAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLA-----GKA--PVTAAP---APSLEFSGLSVAYPGRRAPAL 338 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC-----CCc--CCCCCC---CCeEEEEEEEEECCCCCcccc
Confidence 3345566777777788888888899999999875321110 000 001111 3689999999999874 5899
Q ss_pred cccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEEEEcCCCCCCCCCHHHHhcC
Q 000711 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIY 1194 (1338)
Q Consensus 1117 ~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~~VpQdP~LF~GTIReNL~~ 1194 (1338)
+|+||+|+|||++|||||||||||||+++|.|+|+|++|+|.+||.|++++ +.+|++++||||||++|+|||||||.+
T Consensus 339 ~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~ 418 (529)
T TIGR02857 339 RPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRL 418 (529)
T ss_pred cceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhc
Confidence 999999999999999999999999999999999999999999999999987 456778999999999999999999987
Q ss_pred CCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC-cccCCCChhHHHHHHHHHHhhcC
Q 000711 1195 PLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHK 1273 (1338)
Q Consensus 1195 p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~ 1273 (1338)
+.+ +..|++++++++.++++++++++|+||||.+ ++|.+||||||||++||||++++
T Consensus 419 ~~~----------------------~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~ 476 (529)
T TIGR02857 419 ARP----------------------DASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRD 476 (529)
T ss_pred cCC----------------------CCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcC
Confidence 532 1134556677778888888999999999998 57899999999999999999999
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCcccccceEEE
Q 000711 1274 PKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRL 1324 (1338)
Q Consensus 1274 p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i~~~d~~l~l 1324 (1338)
|+|+|||||||+||.++|+.+++.+++ .++|+|+||||+++++.+|++++|
T Consensus 477 ~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 477 APLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999887754 589999999999999999999875
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-56 Score=600.22 Aligned_cols=207 Identities=18% Similarity=0.260 Sum_probs=162.7
Q ss_pred ceEEeeeEEeCC---CccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCC---CCCceEEcCCCCCccccCCcc
Q 000711 1099 SISFSKLDIITP---SQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP---VVSGSLTKPSQHIDEEAGSGC 1172 (1338)
Q Consensus 1099 ~I~f~nV~f~yp---~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~---~~sG~I~idg~dI~~~~~lr~ 1172 (1338)
.++++||++.|+ +.+++|+|+|++|+|||.+||+||||||||||+++|.|+.+ +++|+|.+||.+++. ..|+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~--~~~~ 836 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS--SFQR 836 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh--hhhc
Confidence 379999999875 35679999999999999999999999999999999999998 688999999998853 3456
Q ss_pred cEEEEcCCCCC-CCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCc
Q 000711 1173 GIFYVPQRPYT-CLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLN 1251 (1338)
Q Consensus 1173 ~i~~VpQdP~L-F~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~ 1251 (1338)
+++||||++.+ +..|+||||.+... ++. ..+ .. .+..++.+.++++.++|.+ -.|+.++
T Consensus 837 ~i~yv~Q~~~~~~~~Tv~E~L~~~a~--------l~~--~~~-~~--~~~~~~~v~~~l~~l~L~~-------~~d~~v~ 896 (1394)
T TIGR00956 837 SIGYVQQQDLHLPTSTVRESLRFSAY--------LRQ--PKS-VS--KSEKMEYVEEVIKLLEMES-------YADAVVG 896 (1394)
T ss_pred ceeeecccccCCCCCCHHHHHHHHHH--------hCC--CCC-CC--HHHHHHHHHHHHHHcCChh-------hCCCeeC
Confidence 79999999764 56799999975210 000 000 00 0001234566777777743 2455553
Q ss_pred -ccCCCChhHHHHHHHHHHhhcCCC-EEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCCCc--ccccceEEE
Q 000711 1252 -WEDILSLGEQQRLGMARLFFHKPK-FGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI--PFHSLELRL 1324 (1338)
Q Consensus 1252 -~g~~LSgGQrQrlaiARAlLr~p~-ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~~i--~~~d~~l~l 1324 (1338)
.+..||||||||++|||||+++|+ ||+||||||+||..+...+.+++++ .|+|||+++|+++.. +..|+++.|
T Consensus 897 ~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L 976 (1394)
T TIGR00956 897 VPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLL 976 (1394)
T ss_pred CCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEE
Confidence 345799999999999999999997 9999999999999999988877643 589999999999853 678999999
Q ss_pred ecC
Q 000711 1325 IDG 1327 (1338)
Q Consensus 1325 ~~g 1327 (1338)
.+|
T Consensus 977 ~~G 979 (1394)
T TIGR00956 977 QKG 979 (1394)
T ss_pred cCC
Confidence 765
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-55 Score=554.70 Aligned_cols=467 Identities=16% Similarity=0.222 Sum_probs=324.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-cchhhcccCCCCCCccchhHHHHHHHHHHHHHHHHHhhHhH
Q 000711 808 SAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPS 886 (1338)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~~~-~ff~~~~~~~~~~~~~~Rls~D~~~l~~~l~~~~~~~i~~~ 886 (1338)
.++..+..+...++..+...+....+...+++++++.+ .+|+. ...++..+|++.|++.+...+...+..++..+
T Consensus 64 ~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~----~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~ 139 (571)
T TIGR02203 64 AVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDR----QPTGTLLSRITFDSEQVASAATDAFIVLVRET 139 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC----CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444455555555555556666666666543 45542 23466789999999999887765544444332
Q ss_pred -------HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhcCccccccHHHHHhccchHHHHHHHHhhHHHhhhcCC
Q 000711 887 -------VDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGG 959 (1338)
Q Consensus 887 -------~~i~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~~~~~~e~i~~~~~ 959 (1338)
+.+++++|.++++. ++..++...+.....++......+.++.++.......+...+.++++.++.
T Consensus 140 ~~~~~~~~~l~~~~~~l~~i~--------l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~ 211 (571)
T TIGR02203 140 LTVIGLFIVLLYYSWQLTLIV--------VVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGG 211 (571)
T ss_pred HHHHHHHHHHHHHhHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcc
Confidence 22344556554432 111111122222222333444455555555566666677778899999998
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhhhHHHHHHHHHHHHhhcccchhhhchHHHHHHHHHHHHHH
Q 000711 960 GAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVV 1039 (1338)
Q Consensus 960 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~~~~~~ 1039 (1338)
+......+++.+++..+......+...+...+...+... ...+.++++....... ..+.|.+..+.. +.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~g~~~~~~g--~lt~g~l~a~~~----~~ 280 (571)
T TIGR02203 212 QAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASL-----ALAVVLFIALFQAQAG--SLTAGDFTAFIT----AM 280 (571)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHcC--CCCHhHHHHHHH----HH
Confidence 887777777766666655444444333333222222111 1111111111110000 113444443332 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHhhcCCCCCCccCCccCCCCCCCCCCceEEeeeEEeCCC-ccccccc
Q 000711 1040 SQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS-QKLLARQ 1118 (1338)
Q Consensus 1040 ~~~~~~~~~~~~~~~~~~~~~~a~~Ri~~~~~~~~~~~~~~~~~~~~~~~~wp~~~~~g~I~f~nV~f~yp~-~~~vL~~ 1118 (1338)
.....++..+......+.+...+.+|+.++.+.+++.+.. . ...+ ...+.|+|+||+|+||+ ++++|+|
T Consensus 281 ~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~----~----~~~~--~~~~~i~~~~v~f~y~~~~~~il~~ 350 (571)
T TIGR02203 281 IALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG----T----RAIE--RARGDVEFRNVTFRYPGRDRPALDS 350 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC----C----CCCC--CCCCeEEEEEEEEEcCCCCCccccC
Confidence 4566788888888888999999999999987543221110 0 0011 12468999999999976 5789999
Q ss_pred cceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEEEEcCCCCCCCCCHHHHhcCCC
Q 000711 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPL 1196 (1338)
Q Consensus 1119 lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~~VpQdP~LF~GTIReNL~~p~ 1196 (1338)
+||+|+|||+++|||+||||||||+++|.|+|+|++|+|.+||+|++++ +.+|++++||||+|++|+|||||||.++.
T Consensus 351 inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~ 430 (571)
T TIGR02203 351 ISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGR 430 (571)
T ss_pred eeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999987 45677899999999999999999998763
Q ss_pred chHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC-cccCCCChhHHHHHHHHHHhhcCCC
Q 000711 1197 SREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPK 1275 (1338)
Q Consensus 1197 ~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ 1275 (1338)
.. +..|++++++++.+++++++.++|+||||.+ ++|.+||||||||||||||++++|+
T Consensus 431 ~~---------------------~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~ 489 (571)
T TIGR02203 431 TE---------------------QADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAP 489 (571)
T ss_pred CC---------------------CCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 20 1245667788888899999999999999998 5789999999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1276 FGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1276 ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
|++||||||+||.++|+.+.+.++. .++|+|+|+||++.++.+|+++++++|+
T Consensus 490 illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~ 544 (571)
T TIGR02203 490 ILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGR 544 (571)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCE
Confidence 9999999999999999999887654 5899999999999999999999997653
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-54 Score=506.37 Aligned_cols=476 Identities=19% Similarity=0.244 Sum_probs=324.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-cchhhcccCCCCCCccchhHHHHHHHHHHHHH-
Q 000711 800 LIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKLTTDLSG- 877 (1338)
Q Consensus 800 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~~~-~ff~~~~~~~~~~~~~~Rls~D~~~l~~~l~~- 877 (1338)
.++..++..+...++.+....+..+.+...+..+...++++..+.. .|-+ ....++..+.+++-++.+...+..
T Consensus 42 ~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~----~~~~g~~atl~~egve~l~~Y~~ry 117 (559)
T COG4988 42 LLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIA----QKPAGSAATLALEGIEQLEPYYARY 117 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhc----CCCcchHHHHHHHHHHHHHHHHHHH
Confidence 3344444445556666666666667777777777777777655432 2221 122345567777778877655444
Q ss_pred ---HHHHhhHhH---HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhcCccccccHHH-HHhccchHHHHHHHHhh
Q 000711 878 ---LVTGMVKPS---VDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSRE-QQLEGTFRFMHERLRAH 950 (1338)
Q Consensus 878 ---~~~~~i~~~---~~i~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~le~~~r~~~~~~~~~ 950 (1338)
.+..++.|+ +.++|++|.-+++.....+.+.+++++++ +. -.+.++++ ..+.....+.+.++ .+
T Consensus 118 LPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg-----~~---a~~~s~~~~~~~~~ls~~FLD~L-rG 188 (559)
T COG4988 118 LPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVG-----LA---AKDASEKQFSALARLSGHFLDRL-RG 188 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----HH---HhHHHHHHHHHHHHHHHHHHHHh-cC
Confidence 344444443 34467888877654221111111111111 11 11111111 11111112233333 36
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhhhHHHHHHHHHHHHhhcccchhhhchHHHHH
Q 000711 951 AESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAH 1030 (1338)
Q Consensus 951 ~e~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 1030 (1338)
.+++++|+..+...+.+.+.-++..+..+...+...+.....++++......++ +..+....+.+.+ .+..
T Consensus 189 L~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvA----v~~g~~ll~~G~l-----tl~~ 259 (559)
T COG4988 189 LETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVA----VYIGFRLLGEGDL-----TLFA 259 (559)
T ss_pred hHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHccCCc-----cHHH
Confidence 789999998887777777666666666666666666666666666532222111 1122222110000 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHhhcCCCCCCccCCccCCCCCCCCCCceEEeeeEEeCC
Q 000711 1031 ALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITP 1110 (1338)
Q Consensus 1031 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ri~~~~~~~~~~~~~~~~~~~~~~~~wp~~~~~g~I~f~nV~f~yp 1110 (1338)
++ ++....-..+.|+.++...++.-....++.+.++.+.+.+....+.. ......|. .+.+|+++|++|.||
T Consensus 260 ~l-~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~----~~~~~~~~---~~~ei~~~~l~~~y~ 331 (559)
T COG4988 260 GL-FVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSG----EKAEVANE---PPIEISLENLSFRYP 331 (559)
T ss_pred HH-HHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCc----cccccccC---CCceeeecceEEecC
Confidence 11 12223456778999999888887777888999999876443211110 00011221 134566679999999
Q ss_pred CccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEEEEcCCCCCCCCCH
Q 000711 1111 SQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTL 1188 (1338)
Q Consensus 1111 ~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~~VpQdP~LF~GTI 1188 (1338)
+++++++|+||+++||+++||||+||||||||+++|.||.+|++|+|.+||+|++++ ..+|+++++|||+||+|.|||
T Consensus 332 ~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTi 411 (559)
T COG4988 332 DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTI 411 (559)
T ss_pred CCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccH
Confidence 988999999999999999999999999999999999999999999999999999998 356779999999999999999
Q ss_pred HHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC-cccCCCChhHHHHHHHH
Q 000711 1189 RDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMA 1267 (1338)
Q Consensus 1189 ReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiA 1267 (1338)
||||.+... +..|+++.++++.++|.++++. |+|+||.+ +.|.+|||||+||+++|
T Consensus 412 reNi~l~~~----------------------~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLA 468 (559)
T COG4988 412 RENILLARP----------------------DASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALA 468 (559)
T ss_pred HHHhhccCC----------------------cCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHH
Confidence 999976432 2246667778888888889988 99999998 57899999999999999
Q ss_pred HHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1268 RLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1268 RAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
||+++++++++||||||+||.|+|+.|.+.+.+ +++|||+|+||+..+.-.|+++++++|+
T Consensus 469 RAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~ 531 (559)
T COG4988 469 RALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGR 531 (559)
T ss_pred HHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCc
Confidence 999999999999999999999999998887654 5899999999999999999999997553
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-55 Score=555.60 Aligned_cols=189 Identities=21% Similarity=0.222 Sum_probs=151.5
Q ss_pred ceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccccCCcccEEEEc
Q 000711 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 1178 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~~lr~~i~~Vp 1178 (1338)
.|+++||++.|++ +++|+|+||+|++|+++||+||||||||||+++|.|+++|++|+|.+ |.+ .+|+|+|
T Consensus 319 ~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~--------~~i~y~~ 388 (635)
T PRK11147 319 VFEMENVNYQIDG-KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTK--------LEVAYFD 388 (635)
T ss_pred eEEEeeeEEEECC-eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCC--------cEEEEEe
Confidence 5899999999864 56999999999999999999999999999999999999999999998 432 2599999
Q ss_pred CCC-CCCC-CCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchh-hhhhhcccCcccCcccCC
Q 000711 1179 QRP-YTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSY-LLEREEVGWDANLNWEDI 1255 (1338)
Q Consensus 1179 QdP-~LF~-GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~-~i~~~~~Gldt~~~~g~~ 1255 (1338)
|++ .+++ -|+.+|+.++.... . ....+..+.++++.+++.. .. +.. ...
T Consensus 389 q~~~~l~~~~tv~e~l~~~~~~~----------~--------~~~~~~~~~~~l~~~~l~~~~~-------~~~---~~~ 440 (635)
T PRK11147 389 QHRAELDPEKTVMDNLAEGKQEV----------M--------VNGRPRHVLGYLQDFLFHPKRA-------MTP---VKA 440 (635)
T ss_pred CcccccCCCCCHHHHHHhhcccc----------c--------ccchHHHHHHHHHhcCCCHHHH-------hCh---hhh
Confidence 987 4655 49999996532100 0 0001223455566555521 11 111 246
Q ss_pred CChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHhcCCeEEEeccCCCCc-ccccceEEEe
Q 000711 1256 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALI-PFHSLELRLI 1325 (1338)
Q Consensus 1256 LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~~~~TvI~IAHRl~~i-~~~d~~l~l~ 1325 (1338)
||||||||++||||++++|++|||||||++||.++.+.+.++++..+.|||+|+|+...+ .++|+++.+.
T Consensus 441 LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~ 511 (635)
T PRK11147 441 LSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFE 511 (635)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEe
Confidence 999999999999999999999999999999999999999988877677999999999865 5799999995
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-55 Score=553.54 Aligned_cols=459 Identities=18% Similarity=0.211 Sum_probs=306.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-cchhhcccCCCCCCccchhHHHHHHHHHHHHHHHHHhhHhH----
Q 000711 812 SFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPS---- 886 (1338)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~~~-~ff~~~~~~~~~~~~~~Rls~D~~~l~~~l~~~~~~~i~~~---- 886 (1338)
.+..+...++..+...+...++..++++++++.+ .||+. ...++..+|+++|++.+...+...+..++..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~----~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~ 154 (592)
T PRK10790 79 AGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDT----QPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIG 154 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555566666666666643 56652 24467889999999999877665544433322
Q ss_pred ---HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhcCccccccHHHHHhccchHHHHHHHHhhHHHhhhcCChHHH
Q 000711 887 ---VDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGARE 963 (1338)
Q Consensus 887 ---~~i~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~~~~~~e~i~~~~~~~~e 963 (1338)
+.+++++|.+.++.. ++.+.+++....... .......+.++..+.......+...+.++++.|+.++..
T Consensus 155 ~~~~~~~~~~~~l~li~l-----~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~ 226 (592)
T PRK10790 155 AMLVAMFSLDWRMALVAI-----MIFPAVLVVMVIYQR---YSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARF 226 (592)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHH
Confidence 222334555543321 010111111111111 111222222222223333344555677899999877666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hhhhhHHHHhhhhhHHHHHHHHHHHHhhcccchhhhchHHHHHHHHHHHHHHHHH
Q 000711 964 KAMIESRFRELLEHSLLLLKKKWL-FGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQS 1042 (1338)
Q Consensus 964 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~~~~~~~~~ 1042 (1338)
.+.+.+..++..+......+...+ ......++.. .+..++.++++....+. .+.|.+..+. .+....
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~----is~g~l~a~~----~~~~~~ 294 (592)
T PRK10790 227 GERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSA----LILCGLLMLFGFSASGT----IEVGVLYAFI----SYLGRL 294 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCC----cCHHHHHHHH----HHHHHH
Confidence 555555544444333222222111 1111111111 11111111111111111 1233333322 233455
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHhhcCCCCCCccCCccCCCCCCCCCCceEEeeeEEeCCCccccccccceE
Q 000711 1043 FLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFE 1122 (1338)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~~~a~~Ri~~~~~~~~~~~~~~~~~~~~~~~~wp~~~~~g~I~f~nV~f~yp~~~~vL~~lsf~ 1122 (1338)
..++..+......+.+...+.+|+.++.+.+++... . ...++ ..+.|+|+||+|+||+++++|+|+||+
T Consensus 295 ~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~------~--~~~~~---~~~~i~~~~v~f~y~~~~~il~~i~l~ 363 (592)
T PRK10790 295 NEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG------N--DDRPL---QSGRIDIDNVSFAYRDDNLVLQNINLS 363 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC------C--CccCC---CCCeEEEEEEEEEeCCCCceeeceeEE
Confidence 667788888888888889999999998754321100 0 01111 146899999999998777899999999
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEEEEcCCCCCCCCCHHHHhcCCCchHH
Q 000711 1123 IVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREE 1200 (1338)
Q Consensus 1123 I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~~VpQdP~LF~GTIReNL~~p~~~~~ 1200 (1338)
|+|||++||||+||||||||+++|.|+|+|++|+|.+||.|++++ ..+|++|+||||||+||+||||+||.++.+
T Consensus 364 i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~--- 440 (592)
T PRK10790 364 VPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRD--- 440 (592)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCC---
Confidence 999999999999999999999999999999999999999999987 466789999999999999999999987532
Q ss_pred HHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC-cccCCCChhHHHHHHHHHHhhcCCCEEEe
Q 000711 1201 AELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGIL 1279 (1338)
Q Consensus 1201 ~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiL 1279 (1338)
..|++++++++.++++++++++|+||||.+ +.|.+||||||||||||||++++|+||||
T Consensus 441 --------------------~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illl 500 (592)
T PRK10790 441 --------------------ISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILIL 500 (592)
T ss_pred --------------------CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 135567777888888889999999999998 57889999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1280 DECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1280 DEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
|||||+||.++|+.+.+.++. .++|+|+||||+++++.+|++++|++|+
T Consensus 501 DEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~ 551 (592)
T PRK10790 501 DEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQ 551 (592)
T ss_pred eCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCE
Confidence 999999999999999887754 4899999999999999999999998765
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-55 Score=500.12 Aligned_cols=422 Identities=20% Similarity=0.226 Sum_probs=279.1
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHHHhhHhHHH-------HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhcCcccc
Q 000711 856 KSIDADQRITHDLEKLTTDLSGLVTGMVKPSVD-------ILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGD 928 (1338)
Q Consensus 856 ~~~~~~~Rls~D~~~l~~~l~~~~~~~i~~~~~-------i~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 928 (1338)
+.+|..+|+..|++.++....-++...+..++. +-+++|.+++..+. .+.+..+++...+++.- ..
T Consensus 113 r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~---~ll~~lli~P~~~~~~~----~~ 185 (573)
T COG4987 113 RSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGL---ILLLLLLIIPTLFYRAG----RK 185 (573)
T ss_pred ChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH---HHHHHHHHHHHHHHHhh----hh
Confidence 356789999999999998766555444332222 23456655544321 11111111222222221 12
Q ss_pred ccHHHHHhccchHHHHHHHHhhHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhhhHHHHHHH
Q 000711 929 LTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLS 1008 (1338)
Q Consensus 929 ~~~~~~~le~~~r~~~~~~~~~~e~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1338)
...+.+...+.++........+......||.++..+..++..-....+..++..+...+... +...+......+..
T Consensus 186 ~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a----~~~l~~g~~v~~~l 261 (573)
T COG4987 186 FGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDA----ILLLIAGLLVIGLL 261 (573)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 23333444444554444444444456677766655555444333333333332222222222 11111112222233
Q ss_pred HHHHHhhcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHhHHHHHHHHHhhcCCCCCCccCCc
Q 000711 1009 LLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDIL-ELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSS 1087 (1338)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~g~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~Ri~~~~~~~~~~~~~~~~~~~~~ 1087 (1338)
+|.+.....+.. ..+ ......++ +...+.+|..+. .++....+...|+.|+.++.+.+++...+
T Consensus 262 ~w~a~~~~~G~~--~~~--~aa~~ll~---~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~-------- 326 (573)
T COG4987 262 LWMAAQVGAGAL--AQP--GAALALLV---IFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFP-------- 326 (573)
T ss_pred HHHHhcCcCCCc--chh--HHHHHHHH---HHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCC--------
Confidence 444432211110 001 11111111 112222333333 44455566667778877765443332211
Q ss_pred cCCCCCCCCCCceEEeeeEEeCCCc-cccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcc
Q 000711 1088 QHKWNSTDYQDSISFSKLDIITPSQ-KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDE 1166 (1338)
Q Consensus 1088 ~~~wp~~~~~g~I~f~nV~f~yp~~-~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~ 1166 (1338)
.+.-|.. ...++++||+|.||+. +++|+|+||++++||||||+|||||||||++++|.|-|+|++|+|..+|.++..
T Consensus 327 ~~~~~~~--~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~ 404 (573)
T COG4987 327 DEQTATT--GQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIAS 404 (573)
T ss_pred ccccCCc--cceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhh
Confidence 0011111 1279999999999985 589999999999999999999999999999999999999999999999999999
Q ss_pred ccC--CcccEEEEcCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcc
Q 000711 1167 EAG--SGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEV 1244 (1338)
Q Consensus 1167 ~~~--lr~~i~~VpQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~ 1244 (1338)
++. +|..|++++|+++||+||||+||.... ++.+|++++++++.|+|.++++..|+
T Consensus 405 l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~----------------------~~AsDEel~~aL~qvgL~~l~~~~p~ 462 (573)
T COG4987 405 LDEQALRETISVLTQRVHLFSGTLRDNLRLAN----------------------PDASDEELWAALQQVGLEKLLESAPD 462 (573)
T ss_pred CChhhHHHHHhhhccchHHHHHHHHHHHhhcC----------------------CCCCHHHHHHHHHHcCHHHHHHhChh
Confidence 854 688899999999999999999996432 33468889999999999999999999
Q ss_pred cCcccC-cccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCcccccce
Q 000711 1245 GWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLE 1321 (1338)
Q Consensus 1245 Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i~~~d~~ 1321 (1338)
||+|.+ +.|.+|||||||||||||++|++.++++|||||.+||++||+.+.+.+.+ .|+|+|+|+||+..++..|++
T Consensus 463 gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drI 542 (573)
T COG4987 463 GLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRI 542 (573)
T ss_pred hhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEE
Confidence 999998 57899999999999999999999999999999999999999998877643 699999999999999999999
Q ss_pred EEEecC
Q 000711 1322 LRLIDG 1327 (1338)
Q Consensus 1322 l~l~~g 1327 (1338)
+++++|
T Consensus 543 ivl~~G 548 (573)
T COG4987 543 IVLDNG 548 (573)
T ss_pred EEEECC
Confidence 999877
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-55 Score=549.03 Aligned_cols=459 Identities=18% Similarity=0.215 Sum_probs=306.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-cchhhcccCCCCCCccchhHHHHHHHHHHHHHHHHHhhHhH-------
Q 000711 815 APSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPS------- 886 (1338)
Q Consensus 815 ~~~~~~~~~~~~~~~r~~l~~~l~~~~l~~~-~ff~~~~~~~~~~~~~~Rls~D~~~l~~~l~~~~~~~i~~~------- 886 (1338)
.+....+..++..+++.++...+++.+++.+ .+|+- ...++..+|+++|++.+...+...+..++..+
T Consensus 73 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~----~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (588)
T PRK13657 73 GVLVARHADRLAHRRRLAVLTEYFERIIQLPLAWHSQ----RGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLL 148 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCc----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555666666666667777666643 55542 23466789999999988755444433332221
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhcCccccccHHHHHhccchHHHHHHHHhhHHHhhhcCChHHHHHH
Q 000711 887 VDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAM 966 (1338)
Q Consensus 887 ~~i~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~~~~~~e~i~~~~~~~~e~~~ 966 (1338)
+.+++.+|.++++. ++++ ++...+.....+.......+.++..+.+.....+...+.+.++.|+.++.+.+.
T Consensus 149 ~~~~~~~~~l~l~~----l~~~----~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~ 220 (588)
T PRK13657 149 PLALFMNWRLSLVL----VVLG----IVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQA 220 (588)
T ss_pred HHHHHHHHHHHHHH----HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHH
Confidence 12234455554332 1111 111111122222222223333333344444445555677899999988887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhhhHHHHHHHHHHHHh--hcccchhhhchHHHHHHHHHHHHHHHHHHH
Q 000711 967 IESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAME--HKGDRALVSTQGELAHALRFLASVVSQSFL 1044 (1338)
Q Consensus 967 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~l~~~l~~~~~~~~~~~~ 1044 (1338)
+.+.+++..+......+...+......++.. +...+.++++.. ..+. .+.|.+..++.+ +.....
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~g~~~v~~g~----lt~g~~~a~~~l----~~~~~~ 287 (588)
T PRK13657 221 LRDIADNLLAAQMPVLSWWALASVLNRAAST-----ITMLAILVLGAALVQKGQ----LRVGEVVAFVGF----ATLLIG 287 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcCC----cCHHHHHHHHHH----HHHHHH
Confidence 7766666655443333322222222111111 111111112111 1111 234444433322 334555
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHHHHHHhhcCCCCCCccCCccCCCCCCCCCCceEEeeeEEeCCCccccccccceEEe
Q 000711 1045 AFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIV 1124 (1338)
Q Consensus 1045 ~~~~~~~~~~~~~~~~~a~~Ri~~~~~~~~~~~~~~~~~~~~~~~~wp~~~~~g~I~f~nV~f~yp~~~~vL~~lsf~I~ 1124 (1338)
++..+......+.....+++|+.++.+.+++.++ .. . ...++ ...+.|+|+||+|.||+.+++|+|+||+|+
T Consensus 288 ~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~---~~-~--~~~~~--~~~~~I~~~~vsf~y~~~~~iL~~inl~i~ 359 (588)
T PRK13657 288 RLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRD---PP-G--AIDLG--RVKGAVEFDDVSFSYDNSRQGVEDVSFEAK 359 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC---CC-C--CCCcC--CCCCeEEEEEEEEEeCCCCceecceeEEEC
Confidence 6667777766676666777787776543221110 00 0 00111 124689999999999876789999999999
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEEEEcCCCCCCCCCHHHHhcCCCchHHHH
Q 000711 1125 PGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAE 1202 (1338)
Q Consensus 1125 ~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~~VpQdP~LF~GTIReNL~~p~~~~~~~ 1202 (1338)
|||+++|||+||||||||+++|.|+|+|.+|+|.+||.|++++ ..+|++|+||||||+||+|||||||.++.+
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~----- 434 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRP----- 434 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCC-----
Confidence 9999999999999999999999999999999999999999988 356778999999999999999999987532
Q ss_pred HHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC-cccCCCChhHHHHHHHHHHhhcCCCEEEeec
Q 000711 1203 LRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILDE 1281 (1338)
Q Consensus 1203 ~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLDE 1281 (1338)
+..|++++++++.+++.++++++|+|+||.+ ++|.+||||||||||||||++++|+|+||||
T Consensus 435 -----------------~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDE 497 (588)
T PRK13657 435 -----------------DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDE 497 (588)
T ss_pred -----------------CCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 1235566777778888888899999999987 5788999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1282 CTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1282 ATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
|||+||.++|+.+.+.++. .++|+|+||||+++++.+|++++|++|+
T Consensus 498 pts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~ 546 (588)
T PRK13657 498 ATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGR 546 (588)
T ss_pred CccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCE
Confidence 9999999999999887654 4899999999999999999999997764
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-56 Score=496.41 Aligned_cols=526 Identities=19% Similarity=0.258 Sum_probs=343.3
Q ss_pred HHHHHHHHHHhcccCc-hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHH--HHH
Q 000711 86 KSLQVLAAILLSEMGK-MGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLST--MHS 162 (1338)
Q Consensus 86 ~~l~~l~~~~~p~~~~-~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 162 (1338)
+.++.+..++.|.+.. .+-..+..++ +.++.-.+.+.+|.+.+...+.+..-+. .-+..+..++++.++--. -+.
T Consensus 196 rk~~~~~~ylwp~~~~alql~v~~cl~-ll~i~rli~~~~pi~~k~iv~~ltap~~-~~~~~~~~~v~L~flqg~gtgsG 273 (790)
T KOG0056|consen 196 RKLRTVAPYLWPTKSIALQLRVVFCLF-LLIIGRLINVSLPILSKWIVDELTAPDT-FQYSLVFLYVFLKFLQGGGTGSG 273 (790)
T ss_pred ceeEEeccccccCCCcchhHHHHHHHH-HHHHHHHHhhhhHHhHHHHHHhhcCcch-hhHHHHHHHHHHHHHhcCCcccc
Confidence 4445555666665332 1222233333 3334446788888888888888772221 112222222222111100 001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCC-CCCCch---hHHHccHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000711 163 TSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDG-RITHPE---QRLASDVPRFCSELSELVQDDLTAVTDGLLY 238 (1338)
Q Consensus 163 ~~~~l~~~l~~~~R~~lt~~l~~~~~~~~~~~~~~~~d~-~~~n~~---qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~ 238 (1338)
+..-++..+=++..+.-++.+.-+.|+|+..+.+.|+-+ +.+... .|=++-+. +.+.+..-+.+.+.-+..+++|
T Consensus 274 ~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vY 352 (790)
T KOG0056|consen 274 FLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVY 352 (790)
T ss_pred chhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhh
Confidence 122223333344445577777778888888787777643 344332 23232233 2222222222223223333222
Q ss_pred HHHHHHhchhhHHHHHHHHHHH----HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHH
Q 000711 239 TWRLCSYASPKYVFWILAYVLG----AGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQ 314 (1338)
Q Consensus 239 ~~~l~~~~~~~l~~~~l~~~~~----~~~~~~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~ 314 (1338)
... ..++.+.+++++...+ ...++-|=.+.-++++ ..+.+-|.....-.-|-|+||-|++|+.|.
T Consensus 353 F~~---~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn----~~~nesrAr~vDsllNFETVKyy~Ae~yEv---- 421 (790)
T KOG0056|consen 353 FFI---KFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMN----NSWNESRARQVDSLLNFETVKYYNAEDYEV---- 421 (790)
T ss_pred hhh---hHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhh----hhhhhhhhhhhhhhhcchhhhccCchhhhH----
Confidence 111 1234444443332222 2222323222222222 122222222333334889999999999998
Q ss_pred HHHHHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHhHhcccc-cCCcchhhHHHHHHHHHHHHHHHHHH
Q 000711 315 QKFKALTRHMRVVLH-DH---WWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISL 389 (1338)
Q Consensus 315 ~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~g~~~~~~~~~~~~~~~~~~ 389 (1338)
++|++.+..+.+..+ .. .+++..++.+. -++...+.+++ ... ..+..+.|.-. .+..+++.+
T Consensus 422 erYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii-~lgll~gsll~------aY~Vt~q~ltVGDfV------lf~TYliqL 488 (790)
T KOG0056|consen 422 ERYREAILKYQKQEWKSLASLNFLNIVQNGII-GLGLLAGSLLC------AYRVTEQTLTVGDFV------LFLTYLIQL 488 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHhhhhhee------eeeeeecccccccee------hHHHHHHHH
Confidence 466655544333221 11 12222222221 11111111111 111 11223444322 245678889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCcCCCCcEEEEeEEEEcCCCCeeeeeeeEEEe
Q 000711 390 FQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVE 469 (1338)
Q Consensus 390 ~~~l~~l~~~~~~l~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~l~~~sl~i~ 469 (1338)
++++..+...++.+|+...-.+++++++++++|..+.. .........|.|+|+||+|.|.+++|+|+|+||+++
T Consensus 489 y~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P------~a~pl~~~~G~i~fsnvtF~Y~p~k~vl~disF~v~ 562 (790)
T KOG0056|consen 489 YMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLP------GAPPLKVTQGKIEFSNVTFAYDPGKPVLSDISFTVQ 562 (790)
T ss_pred hCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCC------CCCCccccCCeEEEEEeEEecCCCCceeecceEEec
Confidence 99999999999999999999999999998877654211 111112246889999999999999999999999999
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC------ccccccEEEEecCCCCCCCCHHHHhcCCCCCCccc
Q 000711 470 PGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV 543 (1338)
Q Consensus 470 ~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~ 543 (1338)
||+.+++|||||+||||++|+|.++++..+|.|.+||+| .++|++||.||||..+|+.|+..||.|+.+.
T Consensus 563 pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~---- 638 (790)
T KOG0056|consen 563 PGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPS---- 638 (790)
T ss_pred CCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCC----
Confidence 999999999999999999999999999999999999987 4688999999999999999999999998764
Q ss_pred CCCCHHHHHHHHHHcCCchHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 000711 544 EPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAK 620 (1338)
Q Consensus 544 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~ 620 (1338)
.+++++.++.+.+++++-+-.+|.++.+ ++|-.||||||||+|+||+++++|.|++|||+|||||..+|+.|+..
T Consensus 639 --AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaa 716 (790)
T KOG0056|consen 639 --ASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAA 716 (790)
T ss_pred --CChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHH
Confidence 5789999999999999999999988765 57889999999999999999999999999999999999999999999
Q ss_pred HHc--cCCeEEEEecChhhHhhcceEEEccCC
Q 000711 621 VRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 621 l~~--~~~t~i~itH~~~~~~~~d~i~~l~~~ 650 (1338)
+.+ .++|.|+|+||++++-+||.|++++++
T Consensus 717 L~rlca~RTtIVvAHRLSTivnAD~ILvi~~G 748 (790)
T KOG0056|consen 717 LARLCANRTTIVVAHRLSTIVNADLILVISNG 748 (790)
T ss_pred HHHHhcCCceEEEeeeehheecccEEEEEeCC
Confidence 986 599999999999999999999999873
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-53 Score=566.33 Aligned_cols=199 Identities=20% Similarity=0.237 Sum_probs=171.5
Q ss_pred CcEEEEeEEEEcC-CCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC-----ccccccEE
Q 000711 443 NYIEFSGVKVVTP-TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIF 516 (1338)
Q Consensus 443 ~~i~~~~v~~~~~-~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~-----~~~~~~i~ 516 (1338)
..|+++||++.|+ +++++++|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+ ...++.+|
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG 1006 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLG 1006 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEE
Confidence 3699999999996 35789999999999999999999999999999999999999999999999965 12456799
Q ss_pred EEecCCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHcc
Q 000711 517 YVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1338)
Q Consensus 517 ~v~Q~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~ 595 (1338)
||||++.++. .|++||+.++...........++++.++++.++|++..++.+ .+||||||||++|||||+.
T Consensus 1007 ~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~--------~~LSGGqKQRLsLArALi~ 1078 (2272)
T TIGR01257 1007 MCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEA--------QDLSGGMQRKLSVAIAFVG 1078 (2272)
T ss_pred EEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh--------hhCCHHHHHHHHHHHHHHc
Confidence 9999998776 599999987532111101112356788999999998877765 6899999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 596 KPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 596 ~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
+|+++|||||||+||+.+++.+++.+++ .|+|+|++||+++.+. .+|+|++|++
T Consensus 1079 ~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~ 1135 (2272)
T TIGR01257 1079 DAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQ 1135 (2272)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999998875 4899999999999885 7999999986
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-53 Score=578.20 Aligned_cols=509 Identities=18% Similarity=0.198 Sum_probs=327.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhcCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000711 111 VGIVVLRTALSNRLAKVQGFLFRAAFLRRV-PLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFE 189 (1338)
Q Consensus 111 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~R~~lt~~l~~~~~~ 189 (1338)
+++.++...+.+..+.|.....+.-..... ..++ ++.++++.++..++..+..|+....+. +..+++|+++++
T Consensus 921 ~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~--~~i~~~l~~~~~i~~~~~~~~~~~~~~----~~~~~L~~~l~~ 994 (1622)
T PLN03130 921 FLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGPLFY--NLIYALLSFGQVLVTLLNSYWLIMSSL----YAAKRLHDAMLG 994 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 333444445555556666655553222111 1211 122222222222233333444444444 488899999999
Q ss_pred ccccccccccCCC-CCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH-HH
Q 000711 190 NMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMM-RN 267 (1338)
Q Consensus 190 ~~~~~~~~~~d~~-~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~l~~~~~~~~~~-~~ 267 (1338)
++.+.|++|||++ .++..+|+++|++.+.+.+...+..++..++..+... .++.+++| +.+++++.+++..+.+ .+
T Consensus 995 ~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~-i~i~~~~~-~~~~~~~pl~~~~~~~~~~ 1072 (1622)
T PLN03130 995 SILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTF-VLIGIVST-ISLWAIMPLLVLFYGAYLY 1072 (1622)
T ss_pred HHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999875 6799999999999988776666655555544433222 12222333 2222222111111111 11
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 268 FSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGA 347 (1338)
Q Consensus 268 ~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (1338)
..+..+++........+.......+..+++++|++|+.+++..+...+..+...+........+.|.+....++ +.
T Consensus 1073 ~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~----~~ 1148 (1622)
T PLN03130 1073 YQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETL----GG 1148 (1622)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Confidence 22222222221222223333445666679999999999876654333333222221111111222332222211 11
Q ss_pred HHHHHHHHHhHhc-ccccCC---cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 000711 348 TVAVILIIEPFFA-GNLKPD---TSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISREL 423 (1338)
Q Consensus 348 ~~~~~~~~~~~~~-g~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~ri~~~~~~~~~~ 423 (1338)
.+.++......+. +..... ..+.|. ..++...+...+..+......++....+.+|+.++++.++|.
T Consensus 1149 ~~i~~~~~~~v~~~~~~~~~~~~~~~~G~---------~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~ 1219 (1622)
T PLN03130 1149 LMIWLTASFAVMQNGRAENQAAFASTMGL---------LLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEA 1219 (1622)
T ss_pred HHHHHHHHHHHHcccccccchhhhHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 1111110000111 111000 011221 112233334445555555667788899999999998766543
Q ss_pred cccCCCCCCCCCCCCcCCCCcEEEEeEEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEE
Q 000711 424 SIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502 (1338)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i 502 (1338)
+..... ......++..+.|+|+||+|.|+++ +++|+|+||+|++||+++||||||||||||+++|.|+++|++|+|
T Consensus 1220 ~~~~~~---~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I 1296 (1622)
T PLN03130 1220 PLVIEN---NRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRI 1296 (1622)
T ss_pred cccccC---CCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceE
Confidence 211000 0001112335789999999999654 579999999999999999999999999999999999999999999
Q ss_pred EeCCCC------ccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccc---
Q 000711 503 AKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI--- 573 (1338)
Q Consensus 503 ~~~~~~------~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~--- 573 (1338)
.+||.+ .++|++|++|||+|.+|+|||||||.++. ..+|++++++++.++++++++++|.+.++
T Consensus 1297 ~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-------~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vg 1369 (1622)
T PLN03130 1297 LIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-------EHNDADLWESLERAHLKDVIRRNSLGLDAEVS 1369 (1622)
T ss_pred EECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-------CCCHHHHHHHHHHcCcHHHHHhCccccCcccc
Confidence 999986 35788999999999999999999998753 25789999999999999999999876554
Q ss_pred cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhHhhcceEEEccCC
Q 000711 574 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 574 ~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~~~~d~i~~l~~~ 650 (1338)
+.|.+||||||||++|||||+++|+|||||||||+||.++++.|++.+++ .++|+|+||||++++..||+|++|+++
T Consensus 1370 e~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G 1448 (1622)
T PLN03130 1370 EAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAG 1448 (1622)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECC
Confidence 46789999999999999999999999999999999999999999999986 489999999999999999999999973
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-54 Score=550.29 Aligned_cols=463 Identities=16% Similarity=0.192 Sum_probs=312.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-ccchhhcccCCCCCCccchhHHHHHHHHHHHHHHHHHhhHh----
Q 000711 811 SSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRK-NSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKP---- 885 (1338)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~~-~~ff~~~~~~~~~~~~~~Rls~D~~~l~~~l~~~~~~~i~~---- 885 (1338)
..+..+...++...+..+....+..++++..++. ..||+. ...++..+|+ +|++.+...+...+..++..
T Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~----~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~ 266 (694)
T TIGR01846 192 EPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFES----RRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFV 266 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCC----CCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555555556666666654 356653 2346678998 69998887665433332211
Q ss_pred ---HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhcCccccccHHHHHhccchHHHHHHHHhhHHHhhhcCChHH
Q 000711 886 ---SVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAR 962 (1338)
Q Consensus 886 ---~~~i~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~~~~~~e~i~~~~~~~~ 962 (1338)
++.+++++|.++++.. +.+++++++. ....+...+...+..+..+.......+...+.++|+.++.+..
T Consensus 267 ~~~~~~l~~~~~~l~li~l----~~~~~~~~i~----~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~ 338 (694)
T TIGR01846 267 VVFLAVMFFYSPTLTGVVI----GSLVCYALLS----VFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQ 338 (694)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHH
Confidence 2223455666654421 1111111111 1111112222233333333344444555667899999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhhhHHHHHHHHHHHHhhcccchhhhchHHHHHHHHHHHHHHHHH
Q 000711 963 EKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQS 1042 (1338)
Q Consensus 963 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~~~~~~~~~ 1042 (1338)
+.+.+.+.+.+..+...+..+...+......++... ...+.++++....... ..+.|.+..+. .+....
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----~~~~il~~g~~lv~~g--~it~G~lia~~----~l~~~~ 407 (694)
T TIGR01846 339 FQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKL-----TFAILLWFGAHLVIGG--ALSPGQLVAFN----MLAGRV 407 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhHHHHHHHHHcC--CCCHHHHHHHH----HHHHHH
Confidence 887777777766655444333333222222222111 1111122222111000 02344443322 344556
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHhhcCCCCCCccCCccCCCCCCCCCCceEEeeeEEeCCC-ccccccccce
Q 000711 1043 FLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS-QKLLARQLTF 1121 (1338)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~~~a~~Ri~~~~~~~~~~~~~~~~~~~~~~~~wp~~~~~g~I~f~nV~f~yp~-~~~vL~~lsf 1121 (1338)
+.++..+......+.+...+.+|+.++.+.+++... .. ....| ...|.|+|+||+|.||+ .+++|+|+||
T Consensus 408 ~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~-----~~--~~~~~--~~~~~i~~~~vsf~y~~~~~~il~~i~l 478 (694)
T TIGR01846 408 TQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRS-----AG--LAALP--ELRGAITFENIRFRYAPDSPEVLSNLNL 478 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC-----CC--CCCCC--CCCCeEEEEEEEEEcCCCCccccccceE
Confidence 678888888888999999999999998765432111 00 00111 12578999999999975 5679999999
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEEEEcCCCCCCCCCHHHHhcCCCchH
Q 000711 1122 EIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSRE 1199 (1338)
Q Consensus 1122 ~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~~VpQdP~LF~GTIReNL~~p~~~~ 1199 (1338)
+|+|||++||||+||||||||+++|.|+|+|++|+|.+||+|++++ ..+|++|+||||||++|+|||||||.++.+
T Consensus 479 ~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~-- 556 (694)
T TIGR01846 479 DIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNP-- 556 (694)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCC--
Confidence 9999999999999999999999999999999999999999999987 456778999999999999999999987432
Q ss_pred HHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC-cccCCCChhHHHHHHHHHHhhcCCCEEE
Q 000711 1200 EAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGI 1278 (1338)
Q Consensus 1200 ~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILi 1278 (1338)
+..+++++++++.+++.++++++|+||||.+ +.|.+||||||||+|||||++++|+|||
T Consensus 557 --------------------~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ili 616 (694)
T TIGR01846 557 --------------------GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILI 616 (694)
T ss_pred --------------------CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 1124455666677777778888899999998 4788999999999999999999999999
Q ss_pred eecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1279 LDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1279 LDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
||||||+||.++|+.+.+.+++ .++|+|+||||+++++.+|+++++++|+
T Consensus 617 lDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~ 668 (694)
T TIGR01846 617 FDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQ 668 (694)
T ss_pred EECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCE
Confidence 9999999999999999887654 5899999999999999999999997653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-53 Score=579.40 Aligned_cols=456 Identities=16% Similarity=0.173 Sum_probs=323.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCC-CCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000711 164 SKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRL 242 (1338)
Q Consensus 164 ~~~l~~~l~~~~R~~lt~~l~~~~~~~~~~~~~~~~d~~-~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l 242 (1338)
..|+....+.+ ..+++|++.++++.+.|++|||.. .++..+|+++|++.+.+.+...+..++..++..+... .+
T Consensus 1025 ~~~~~~~~~~~----~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~l-i~ 1099 (1522)
T TIGR00957 1025 YSMAVSIGGIQ----ASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGAL-IV 1099 (1522)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 34444444444 788999999999999999999865 6789999999999988877766666555554433222 22
Q ss_pred HHhchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHH
Q 000711 243 CSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTR 322 (1338)
Q Consensus 243 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~ 322 (1338)
+.+.+|.++++++..+++..++..+..+..+.+....++..+.......+...++++|++|++|+.+.++..+..+...+
T Consensus 1100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~ 1179 (1522)
T TIGR00957 1100 ILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQK 1179 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 33345544333322222222222222233333222233333444455666667999999999999877655544444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-cccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 323 HMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFF-AGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSR 401 (1338)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 401 (1338)
........+.|.+....++. ..+.+++.....+ .+. .+.|.. . .+..+...+..++..+...+.
T Consensus 1180 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~~~~-----~~~g~l--~----~~l~~~~~~~~~l~~l~~~~~ 1244 (1522)
T TIGR00957 1180 AYYPSIVANRWLAVRLECVG----NCIVLFAALFAVISRHS-----LSAGLV--G----LSVSYSLQVTFYLNWLVRMSS 1244 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCC-----CCHHHH--H----HHHHHHHHHHHHHHHHHHHHH
Confidence 33222223333333322221 1111111100011 122 233322 1 123344555667888888889
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCcCCCCcEEEEeEEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCC
Q 000711 402 RLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPN 480 (1338)
Q Consensus 402 ~l~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~s 480 (1338)
.++....+.+|+.++++.+++.+..... ......++..+.|+|+||+|.|+++ +++|+|+||+|++||+++|||||
T Consensus 1245 ~~e~~~~s~eRi~~~~~~~~e~~~~~~~---~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrT 1321 (1522)
T TIGR00957 1245 EMETNIVAVERLKEYSETEKEAPWQIQE---TAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRT 1321 (1522)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccccccC---CCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCC
Confidence 9999999999999998765543210000 0001112335789999999999764 57999999999999999999999
Q ss_pred CCcHHHHHHHHcCCCCCCccEEEeCCCC------ccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHH
Q 000711 481 GSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVEL 554 (1338)
Q Consensus 481 GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~ 554 (1338)
|||||||+++|.|+++|++|+|.+||.| .++|++|++|||+|++|+|||||||.... ..+|++++++
T Consensus 1322 GsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~-------~~sdeei~~a 1394 (1522)
T TIGR00957 1322 GAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS-------QYSDEEVWWA 1394 (1522)
T ss_pred CCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc-------CCCHHHHHHH
Confidence 9999999999999999999999999986 35788999999999999999999997321 2578999999
Q ss_pred HHHcCCchHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEE
Q 000711 555 LKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCI 629 (1338)
Q Consensus 555 l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i 629 (1338)
++.++++++++++|.+.++ +.|.+||||||||++|||||+++|+|||||||||+||.++++.|++.+++ .++|+|
T Consensus 1395 l~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI 1474 (1522)
T TIGR00957 1395 LELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVL 1474 (1522)
T ss_pred HHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999876554 46789999999999999999999999999999999999999999999986 489999
Q ss_pred EEecChhhHhhcceEEEccC
Q 000711 630 TISHRPALVAFHDVVLSLDG 649 (1338)
Q Consensus 630 ~itH~~~~~~~~d~i~~l~~ 649 (1338)
+||||++++..+|+|++|++
T Consensus 1475 ~IAHRl~ti~~~DrIlVld~ 1494 (1522)
T TIGR00957 1475 TIAHRLNTIMDYTRVIVLDK 1494 (1522)
T ss_pred EEecCHHHHHhCCEEEEEEC
Confidence 99999999999999999986
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-55 Score=547.51 Aligned_cols=193 Identities=23% Similarity=0.266 Sum_probs=151.1
Q ss_pred CceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccccCCcccEEEE
Q 000711 1098 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYV 1177 (1338)
Q Consensus 1098 g~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~~lr~~i~~V 1177 (1338)
..|+++||++.|++.+++|+|+||+|++|++++|+||||||||||+++|.|+.+|++|+|.+++. .+|+|+
T Consensus 507 ~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~---------~~igyv 577 (718)
T PLN03073 507 PIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK---------VRMAVF 577 (718)
T ss_pred ceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc---------eeEEEE
Confidence 36999999999976667999999999999999999999999999999999999999999997652 469999
Q ss_pred cCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchh-hhhhhcccCcccCcccCCC
Q 000711 1178 PQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSY-LLEREEVGWDANLNWEDIL 1256 (1338)
Q Consensus 1178 pQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~-~i~~~~~Gldt~~~~g~~L 1256 (1338)
||++. ..-++.+|.... .... .+...+..+.++++.+++.. ...+ ....|
T Consensus 578 ~Q~~~-~~l~~~~~~~~~---------~~~~---------~~~~~~~~i~~~L~~~gl~~~~~~~----------~~~~L 628 (718)
T PLN03073 578 SQHHV-DGLDLSSNPLLY---------MMRC---------FPGVPEQKLRAHLGSFGVTGNLALQ----------PMYTL 628 (718)
T ss_pred ecccc-ccCCcchhHHHH---------HHHh---------cCCCCHHHHHHHHHHCCCChHHhcC----------Ccccc
Confidence 99973 222444443110 0000 00112445667777777642 1111 23579
Q ss_pred ChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHhcCCeEEEeccCCCCcc-cccceEEEecCC
Q 000711 1257 SLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIP-FHSLELRLIDGE 1328 (1338)
Q Consensus 1257 SgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~~~~TvI~IAHRl~~i~-~~d~~l~l~~g~ 1328 (1338)
|||||||++||||++++|++|||||||++||.++.+.+.+.++..+.|+|+|+|++..+. ++|++++|.+|.
T Consensus 629 SgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~ 701 (718)
T PLN03073 629 SGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGK 701 (718)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999988887766554569999999998664 689999997653
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-53 Score=540.12 Aligned_cols=459 Identities=16% Similarity=0.193 Sum_probs=313.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccc-ccchhhcccCCCCCCccchhHHHHHHHHHHHHHHHHHhhHh-------HH
Q 000711 816 PSIRHLTARLALGWRIRMTQHLLKSYLRK-NSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKP-------SV 887 (1338)
Q Consensus 816 ~~~~~~~~~~~~~~r~~l~~~l~~~~l~~-~~ff~~~~~~~~~~~~~~Rls~D~~~l~~~l~~~~~~~i~~-------~~ 887 (1338)
+...++..++..+....+...++++.++. ..+|+. ...++..+|+++|++.+...+...+..++.. ++
T Consensus 76 ~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~----~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~ 151 (576)
T TIGR02204 76 AARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDK----NRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLI 151 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcc----CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444455555555666655553 345542 2346678999999999977655444333222 22
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhcCccccccHHHHHhccchHHHHHHHHhhHHHhhhcCChHHHHHHH
Q 000711 888 DILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMI 967 (1338)
Q Consensus 888 ~i~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~~~~~~e~i~~~~~~~~e~~~~ 967 (1338)
.++++.|.++.+.. +..++.........+.......+.++..+.+.....+...+.++|+.++.++.+...+
T Consensus 152 ~~~~~~~~l~~~~l--------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~ 223 (576)
T TIGR02204 152 MMFITSPKLTSLVL--------LAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRF 223 (576)
T ss_pred HHHHHhHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHH
Confidence 23345565544321 1111111111222223334455555556666666677777889999999988887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhhhHHHHHHHHHHHHh--hcccchhhhchHHHHHHHHHHHHHHHHHHHH
Q 000711 968 ESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAME--HKGDRALVSTQGELAHALRFLASVVSQSFLA 1045 (1338)
Q Consensus 968 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~l~~~l~~~~~~~~~~~~~ 1045 (1338)
++...+..+...+..+...+...+..++.. +...+.++++.. ..+. .+.|.+..+. .+......+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~g~~~v~~g~----lt~g~~~~~~----~~~~~~~~p 290 (576)
T TIGR02204 224 GGAVEKAYEAARQRIRTRALLTAIVIVLVF-----GAIVGVLWVGAHDVIAGK----MSAGTLGQFV----FYAVMVAGS 290 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcCC----CCHHHHHHHH----HHHHHHHHH
Confidence 777766665544333322222221111110 111111111111 1111 1233333222 233445567
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHHHHHHhhcCCCCCCccCCccCCCCCCCCCCceEEeeeEEeCCCc--cccccccceEE
Q 000711 1046 FGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQ--KLLARQLTFEI 1123 (1338)
Q Consensus 1046 ~~~~~~~~~~~~~~~~a~~Ri~~~~~~~~~~~~~~~~~~~~~~~~wp~~~~~g~I~f~nV~f~yp~~--~~vL~~lsf~I 1123 (1338)
+..+......+.+...+.+|+.++.+.+++.+.. .......+| ..+.|+|+||+|.||+. +++|+|+||+|
T Consensus 291 l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~----~~~~~~~~~---~~~~i~~~~v~f~y~~~~~~~iL~~inl~i 363 (576)
T TIGR02204 291 IGTLSEVWGELQRAAGAAERLIELLQAEPDIKAP----AHPKTLPVP---LRGEIEFEQVNFAYPARPDQPALDGLNLTV 363 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCC----CCCccCCcC---CCceEEEEEEEEECCCCCCCccccceeEEe
Confidence 7888888888889999999999987543221110 000011112 14679999999999853 68999999999
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEEEEcCCCCCCCCCHHHHhcCCCchHHH
Q 000711 1124 VPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEA 1201 (1338)
Q Consensus 1124 ~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~~VpQdP~LF~GTIReNL~~p~~~~~~ 1201 (1338)
+|||+++|||+||||||||+++|+|+|+|++|+|.+||.|++++ ..+|++|+||||||++|+|||||||.++.+.
T Consensus 364 ~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~--- 440 (576)
T TIGR02204 364 RPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPD--- 440 (576)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCC---
Confidence 99999999999999999999999999999999999999999887 3456789999999999999999999876421
Q ss_pred HHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC-cccCCCChhHHHHHHHHHHhhcCCCEEEee
Q 000711 1202 ELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILD 1280 (1338)
Q Consensus 1202 ~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLD 1280 (1338)
..|++++++++.+++.++++++|+|+||.+ ++|.+||||||||+|||||++++|+|||||
T Consensus 441 -------------------~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililD 501 (576)
T TIGR02204 441 -------------------ATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLD 501 (576)
T ss_pred -------------------CCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEe
Confidence 135567778888888888999999999997 578899999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1281 ECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1281 EATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
||||+||.++|+.+.+.++. .++|+|+||||++.++.+|+++++++|+
T Consensus 502 Epts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~ 551 (576)
T TIGR02204 502 EATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGR 551 (576)
T ss_pred CcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCE
Confidence 99999999999988876654 5899999999999999999999998765
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-55 Score=485.15 Aligned_cols=258 Identities=22% Similarity=0.289 Sum_probs=216.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHhhcCCCCCCccCCccCCCCCCCCCCceEEeeeEEeCCCcccccccc
Q 000711 1040 SQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQL 1119 (1338)
Q Consensus 1040 ~~~~~~~~~~~~~~~~~~~~~~a~~Ri~~~~~~~~~~~~~~~~~~~~~~~~wp~~~~~g~I~f~nV~f~yp~~~~vL~~l 1119 (1338)
.|...+.+-+...++.+.+....+++.+++.+.+.+... ....++-|| ...|.|.|+||+|.|...+|+|+|+
T Consensus 210 ~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d-----~pda~~L~~--~~~g~v~F~~V~F~y~~~r~iL~~i 282 (497)
T COG5265 210 FQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSD-----APDAPPLWP--VRLGAVAFINVSFAYDPRRPILNGI 282 (497)
T ss_pred hhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhcc-----CCCCccccc--cccceEEEEEEEeeccccchhhcCc
Confidence 344556666666677776666667777777655433221 111234455 3478999999999998889999999
Q ss_pred ceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEEEEcCCCCCCCCCHHHHhcCCC-
Q 000711 1120 TFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPL- 1196 (1338)
Q Consensus 1120 sf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~~VpQdP~LF~GTIReNL~~p~- 1196 (1338)
||++++|+++||||+||+||||+.++|+||||+++|.|.|||+||+++ ..+|+.||+||||.+||+.|+..|+.|+.
T Consensus 283 sf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~ 362 (497)
T COG5265 283 SFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRP 362 (497)
T ss_pred cccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCc
Confidence 999999999999999999999999999999999999999999999998 56788899999999999999999999953
Q ss_pred -chHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC-cccCCCChhHHHHHHHHHHhhcCC
Q 000711 1197 -SREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKP 1274 (1338)
Q Consensus 1197 -~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p 1274 (1338)
.+++|+..|++.| .++++++.+|+||||.+ ++|-.||||||||+||||++|++|
T Consensus 363 ~at~eev~aaa~~a------------------------qi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p 418 (497)
T COG5265 363 DATAEEVGAAAEAA------------------------QIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNP 418 (497)
T ss_pred cccHHHHHHHHHHh------------------------hhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCC
Confidence 4455555555554 44456677789999988 578889999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1275 KFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1275 ~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
+||+|||||||||..||++||..+++ .|+|.++||||++||-.+|.+++|++|.
T Consensus 419 ~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~ 474 (497)
T COG5265 419 PILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGR 474 (497)
T ss_pred CEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCE
Confidence 99999999999999999999998765 6999999999999999999999997763
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-53 Score=526.74 Aligned_cols=521 Identities=12% Similarity=0.077 Sum_probs=355.8
Q ss_pred HHHHHHHHh-cccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 88 LQVLAAILL-SEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKY 166 (1338)
Q Consensus 88 l~~l~~~~~-p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (1338)
.++++++++ |+++. +++.+++.++.+...+..+.+.+.+++...... . ..+..++++. ++..+..|
T Consensus 5 ~~~l~~~~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~-~---~~~~~~~~~~----~~~~~~~~ 71 (555)
T TIGR01194 5 IGEILALLRSPFPAI-----TAFSIALGLAGGLAIIALLASINNAIHEENFLG-Q---GSLFSFGGLC----LLALLFRI 71 (555)
T ss_pred HHHHHHHHhhccHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-c---hHHHHHHHHH----HHHHHHHH
Confidence 356677777 77662 455555566666666677776666654211000 0 1111111211 22233445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccCCC-CCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 000711 167 ITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSY 245 (1338)
Q Consensus 167 l~~~l~~~~R~~lt~~l~~~~~~~~~~~~~~~~d~~-~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~ 245 (1338)
+..++..+...++..++|.++|+++.+.+++++++. .++..+|+++|++.+.+.+.. +...+..++..+ .+..++++
T Consensus 72 ~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~-~~~~~l~~ 149 (555)
T TIGR01194 72 GADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFF-FCIAYLAY 149 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHH-HHHHHHHH
Confidence 555555555566899999999999999999998764 779999999999998876653 444444433332 23334556
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChH--HHHHHHHHHHHHHHHH
Q 000711 246 ASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGEN--KEESHIQQKFKALTRH 323 (1338)
Q Consensus 246 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~--~e~~~~~~~~~~~~~~ 323 (1338)
++|.+++++++.+++..++..++.++..+...+.++..+++.....+...+.++|+.|+.++ .+.+ +|++..+.
T Consensus 150 ~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~----~~~~~~~~ 225 (555)
T TIGR01194 150 LSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHG----AIQESANN 225 (555)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHH----HhhHHHHH
Confidence 78888888776666655555555566666666667777777777777788999999999854 3333 34433333
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 324 MRVV-LHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRR 402 (1338)
Q Consensus 324 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 402 (1338)
.++. .+...................++.+++ +++.. +..+.|.. ++. ..++..++.++..+...+..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~t~g~l--~a~----~~~~~~l~~pi~~l~~~~~~ 293 (555)
T TIGR01194 226 IADLHIIEILIFIAAENFGQLLFFLLIGCALF----AAAMF--ASIDAAAI--SAF----VLALLYIKGPLEMLVSALPI 293 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHh--cCCCHHHH--HHH----HHHHHHHHHHHHHHHHHHHH
Confidence 2221 111112222212111111111111111 22111 12344432 322 23344556788888889999
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCC--CCcCCCCcEEEEeEEEEcCCC----CeeeeeeeEEEeCCCEEEE
Q 000711 403 LNRLSGYADRIHELMVISRELSIEDKSPQRNGSR--NYFSEANYIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLI 476 (1338)
Q Consensus 403 l~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~v~~~~~~~----~~~l~~~sl~i~~G~~~~i 476 (1338)
+++...+.+|+.++++.+++.+............ ......+.|+++||+|.|++. +++|+|+||++++||+++|
T Consensus 294 ~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~ai 373 (555)
T TIGR01194 294 LAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFI 373 (555)
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEE
Confidence 9999999999999976422110000000000000 000123579999999999753 3699999999999999999
Q ss_pred EcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC------ccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHH
Q 000711 477 TGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGG 550 (1338)
Q Consensus 477 ~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~ 550 (1338)
+||||||||||+++|+|+++|++|+|.++|.+ .++++.++||+|+|++|++|+++|+ .+ ..++++
T Consensus 374 vG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~-~~--------~~~~~~ 444 (555)
T TIGR01194 374 VGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE-GE--------HASLDN 444 (555)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc-cc--------chhHHH
Confidence 99999999999999999999999999999975 2456789999999999999999995 11 246778
Q ss_pred HHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH----ccCC
Q 000711 551 MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR----AMGT 626 (1338)
Q Consensus 551 ~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~----~~~~ 626 (1338)
+.++++.++++++++++|.+.++. .+||||||||++||||++++|+++|||||||+||+++++.+++.+. ..++
T Consensus 445 ~~~~~~~~~l~~~~~~lp~g~~t~--~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~ 522 (555)
T TIGR01194 445 AQQYLQRLEIADKVKIEDGGFSTT--TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGK 522 (555)
T ss_pred HHHHHHHcCCchhhcccccccCCc--ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999998765553 7899999999999999999999999999999999999999987542 3589
Q ss_pred eEEEEecChhhHhhcceEEEccCC
Q 000711 627 SCITISHRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 627 t~i~itH~~~~~~~~d~i~~l~~~ 650 (1338)
|+|+||||++++..+|+|++|+++
T Consensus 523 tiiiisH~~~~~~~~d~i~~l~~G 546 (555)
T TIGR01194 523 TIIIISHDDQYFELADQIIKLAAG 546 (555)
T ss_pred EEEEEeccHHHHHhCCEEEEEECC
Confidence 999999999999999999999863
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-52 Score=568.21 Aligned_cols=454 Identities=17% Similarity=0.210 Sum_probs=319.2
Q ss_pred HHHHHHHHHhcccccccccccCCC-CCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhchhhHHHHHHHH
Q 000711 179 VTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAY 257 (1338)
Q Consensus 179 lt~~l~~~~~~~~~~~~~~~~d~~-~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~l~~ 257 (1338)
..+++|++.|+++.+.|++|||.. .++..+|+++|++.+.+.+...+..++..++..+... .++.+.+|...++++.+
T Consensus 1029 ~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~l-i~~~~~~p~~~~~~i~~ 1107 (1560)
T PTZ00243 1029 GSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSI-LVTSASQPFVLVALVPC 1107 (1560)
T ss_pred HHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 456889999999999999999875 6799999999999988877766655555444433322 22334455222221111
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 258 VLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMI 337 (1338)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1338)
+++...+..++.+....+........+.......+...+.++|+.|+.|+.+.+++.+..+...+..........|.+..
T Consensus 1108 ~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~ 1187 (1560)
T PTZ00243 1108 GYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVR 1187 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111222222222222222333444556677777999999999999998877777666655444433444455544
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhcccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 338 QDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELM 417 (1338)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~ri~~~~ 417 (1338)
..++.......++++.+.. .+.+. +..+.|... .+..+...+..++..+...+..++....+.+|+.+++
T Consensus 1188 ~~~l~~~~~~~~~~~~~~~-~~~~~---~~~~~g~l~------~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~ 1257 (1560)
T PTZ00243 1188 VEFLSNIVVTVIALIGVIG-TMLRA---TSQEIGLVS------LSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYT 1257 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhcc---CCCCHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433211111111111110 11111 112333221 1223344556677788888889999999999999998
Q ss_pred HhhhhccccC--C-------------C------CCCCCCC---CCcCCCCcEEEEeEEEEcCCC-CeeeeeeeEEEeCCC
Q 000711 418 VISRELSIED--K-------------S------PQRNGSR---NYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGS 472 (1338)
Q Consensus 418 ~~~~~~~~~~--~-------------~------~~~~~~~---~~~~~~~~i~~~~v~~~~~~~-~~~l~~~sl~i~~G~ 472 (1338)
+..++.+... . . ....... ...+..+.|+|+||+|.|+++ .++|+|+||+|++||
T Consensus 1258 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~Ge 1337 (1560)
T PTZ00243 1258 DEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPRE 1337 (1560)
T ss_pred hcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEECCCC
Confidence 6433211000 0 0 0000000 011124679999999999765 469999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC------ccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCC
Q 000711 473 NLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPL 546 (1338)
Q Consensus 473 ~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~ 546 (1338)
+++|||+||||||||+++|+|+++|++|+|.+||.| .++|++|+||||+|++|+|||||||.... ..
T Consensus 1338 kVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~-------~~ 1410 (1560)
T PTZ00243 1338 KVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL-------EA 1410 (1560)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCccc-------CC
Confidence 999999999999999999999999999999999986 35788999999999999999999996532 35
Q ss_pred CHHHHHHHHHHcCCchHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccC-CCEEEEecCCCCCCHHHHHHHHHHHH
Q 000711 547 THGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHK-PKFAILDECTSAVTTDMEERFCAKVR 622 (1338)
Q Consensus 547 ~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~-p~illLDEpts~LD~~~~~~i~~~l~ 622 (1338)
++++++++++.+++++++.++|.+.++ +.|.+|||||||||+|||||+++ |+|||||||||+||+++++.|++.++
T Consensus 1411 sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~ 1490 (1560)
T PTZ00243 1411 SSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVM 1490 (1560)
T ss_pred CHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 789999999999999999999876554 46889999999999999999996 89999999999999999999999997
Q ss_pred c--cCCeEEEEecChhhHhhcceEEEccCC
Q 000711 623 A--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 623 ~--~~~t~i~itH~~~~~~~~d~i~~l~~~ 650 (1338)
+ .++|+|+||||++++..+|+|++|+++
T Consensus 1491 ~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G 1520 (1560)
T PTZ00243 1491 SAFSAYTVITIAHRLHTVAQYDKIIVMDHG 1520 (1560)
T ss_pred HHCCCCEEEEEeccHHHHHhCCEEEEEECC
Confidence 6 489999999999999999999999873
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-52 Score=571.32 Aligned_cols=464 Identities=16% Similarity=0.207 Sum_probs=312.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCC-CCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000711 161 HSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYT 239 (1338)
Q Consensus 161 ~~~~~~l~~~l~~~~R~~lt~~l~~~~~~~~~~~~~~~~d~~-~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~ 239 (1338)
..+..|+....+.+ ..+++|++.++++.+.|++|||++ .++..+|+++|++.+.+.+...+..++..++..+...
T Consensus 967 ~~~~~~~~~~~~~~----~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~ 1042 (1495)
T PLN03232 967 TFTNSFWLISSSLH----AAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTF 1042 (1495)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444 888999999999999999999875 6799999999999988877766555554443332221
Q ss_pred HHHHHhchhhHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHH
Q 000711 240 WRLCSYASPKYVFWILAYVLGAGTMMRNFS-PAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFK 318 (1338)
Q Consensus 240 ~~l~~~~~~~l~~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~ 318 (1338)
.. +.++++ +.+++++.+++...+...+. +....+........+.+.....+...+.++|++|+.++++.++..+..+
T Consensus 1043 i~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~ 1120 (1495)
T PLN03232 1043 AL-IGTVST-ISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMD 1120 (1495)
T ss_pred HH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHH
Confidence 11 112222 22221111111111111111 1111122222223333444456666799999999998876543333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-cccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 319 ALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFF-AGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLS 397 (1338)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~ 397 (1338)
...+..........|.+..... +...+.++......+ .+... ....++ ..+ ..+.++...+..++..+.
T Consensus 1121 ~~~~~~~~~~~~~~wl~~~~~~----~~~~~~~~~~~~~v~~~~~~~-~~~~~~--~~~---g~~~~~~~~~~~~l~~l~ 1190 (1495)
T PLN03232 1121 NNIRFTLANTSSNRWLTIRLET----LGGVMIWLTATFAVLRNGNAE-NQAGFA--STM---GLLLSYTLNITTLLSGVL 1190 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcccccc-ccccch--HHH---HHHHHHHHHHHHHHHHHH
Confidence 2221111111112222221111 111111110000011 12110 000111 111 112334455666777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCcCCCCcEEEEeEEEEcCCC-CeeeeeeeEEEeCCCEEEE
Q 000711 398 ISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLI 476 (1338)
Q Consensus 398 ~~~~~l~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~-~~~l~~~sl~i~~G~~~~i 476 (1338)
..+..++....+.+|+.++++.++|.+..... ......++..+.|+|+||+|.|+++ +++|+|+||+|++||+++|
T Consensus 1191 ~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~---~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaI 1267 (1495)
T PLN03232 1191 RQASKAENSLNSVERVGNYIDLPSEATAIIEN---NRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGV 1267 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccccccC---CCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEE
Confidence 88889999999999999998766543211000 0000112234679999999999654 6899999999999999999
Q ss_pred EcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC------ccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHH
Q 000711 477 TGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGG 550 (1338)
Q Consensus 477 ~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~ 550 (1338)
|||||||||||+++|.|+++|++|+|.+||.| .++|++|+||||+|++|+|||||||.++. ..+|++
T Consensus 1268 VG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-------~~sdee 1340 (1495)
T PLN03232 1268 VGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-------EHNDAD 1340 (1495)
T ss_pred ECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-------CCCHHH
Confidence 99999999999999999999999999999976 35788999999999999999999998753 257899
Q ss_pred HHHHHHHcCCchHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cC
Q 000711 551 MVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MG 625 (1338)
Q Consensus 551 ~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~ 625 (1338)
++++++.++++++++++|.+.++ +.|.+||||||||++|||||+++|+|||||||||+||+++++.|++.+++ .+
T Consensus 1341 i~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~ 1420 (1495)
T PLN03232 1341 LWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKS 1420 (1495)
T ss_pred HHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999876554 46889999999999999999999999999999999999999999999986 48
Q ss_pred CeEEEEecChhhHhhcceEEEccCC
Q 000711 626 TSCITISHRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 626 ~t~i~itH~~~~~~~~d~i~~l~~~ 650 (1338)
+|+|+||||++++..+|+|++|+++
T Consensus 1421 ~TvI~IAHRl~ti~~~DrIlVL~~G 1445 (1495)
T PLN03232 1421 CTMLVIAHRLNTIIDCDKILVLSSG 1445 (1495)
T ss_pred CEEEEEeCCHHHHHhCCEEEEEECC
Confidence 9999999999999999999999863
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-53 Score=527.96 Aligned_cols=466 Identities=15% Similarity=0.148 Sum_probs=310.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-ccchhhcccCCCCCCccchhHHHHHHHHHHHHHHHHHhhHhH--
Q 000711 810 ASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRK-NSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPS-- 886 (1338)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~~-~~ff~~~~~~~~~~~~~~Rls~D~~~l~~~l~~~~~~~i~~~-- 886 (1338)
+.++..+....+..++..+.+..+..++++..++. ..||+. ...++..+|+++|++.+...+...+..++..+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~----~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~ 143 (585)
T TIGR01192 68 FNTIAYVLVAREADRLAHGRRATLLTEAFGRIISMPLSWHQQ----RGTSNALHTLLRATETLFGLWLEFMRQHLATFVA 143 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455556666667776777777777764 467763 23467889999999988766555444333222
Q ss_pred -----HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhcCccccccHHHHHhccchHHHHHHHHhhHHHhhhcCChH
Q 000711 887 -----VDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGA 961 (1338)
Q Consensus 887 -----~~i~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~~~~~~e~i~~~~~~~ 961 (1338)
+.+++++|.++++.. +++++++ .+.....++......+.++..+.+.....+...+.++|+.|+.+.
T Consensus 144 ~~~~~~~l~~~~~~l~li~l----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~ 215 (585)
T TIGR01192 144 LFLLIPTAFAMDWRLSIVLM----VLGILYI----LIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIE 215 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccH
Confidence 223445676655431 1111111 111222222222222222233333334445556789999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhhhHHHHHHHHHHHHhhcccchhhhchHHHHHHHHHHHHHHHH
Q 000711 962 REKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQ 1041 (1338)
Q Consensus 962 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~~~~~~~~ 1041 (1338)
.+.+.+.+..++..+......+...+......++.. +...+.++++....... ..+.|.+..+.. +...
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~g~~~v~~g--~it~g~l~a~~~----~~~~ 284 (585)
T TIGR01192 216 AETSALKQFTNNLLSAQYPVLDWWALASGLNRMAST-----ISMMCILVIGTVLVIKG--ELSVGEVIAFIG----FANL 284 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcC--CCCHHHHHHHHH----HHHH
Confidence 887777766666555444333332222222111111 11111122221110000 013344433332 2334
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHhhcCCCCCCccCCccCCCCCCCCCCceEEeeeEEeCCCccccccccce
Q 000711 1042 SFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTF 1121 (1338)
Q Consensus 1042 ~~~~~~~~~~~~~~~~~~~~a~~Ri~~~~~~~~~~~~~~~~~~~~~~~~wp~~~~~g~I~f~nV~f~yp~~~~vL~~lsf 1121 (1338)
+..++..+......+.+...+.+|+.++.+.+++.++. . .+..++. ..+.|+|+||+|.||+.+++|+|+||
T Consensus 285 l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~-----~-~~~~~~~--~~~~i~~~~v~~~y~~~~~~l~~i~~ 356 (585)
T TIGR01192 285 LIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEP-----A-DAPELPN--VKGAVEFRHITFEFANSSQGVFDVSF 356 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC-----c-cCCCCCC--CCCeEEEEEEEEECCCCCccccceeE
Confidence 45566677777777777888889998876543221110 0 0011121 24689999999999876789999999
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEEEEcCCCCCCCCCHHHHhcCCCchH
Q 000711 1122 EIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSRE 1199 (1338)
Q Consensus 1122 ~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~~VpQdP~LF~GTIReNL~~p~~~~ 1199 (1338)
+|++||++|||||||||||||+++|.|+|+|++|+|.+||.|++++ ..+|++++||||||++|+||+||||.++.+.
T Consensus 357 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~- 435 (585)
T TIGR01192 357 EAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREG- 435 (585)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCC-
Confidence 9999999999999999999999999999999999999999999887 3456789999999999999999999875321
Q ss_pred HHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC-cccCCCChhHHHHHHHHHHhhcCCCEEE
Q 000711 1200 EAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGI 1278 (1338)
Q Consensus 1200 ~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILi 1278 (1338)
..|++++++++.+++.+++.++|+|+||.+ ++|.+|||||||||+||||++++|+|||
T Consensus 436 ---------------------~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ili 494 (585)
T TIGR01192 436 ---------------------ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILV 494 (585)
T ss_pred ---------------------CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 123445555566666677777899999987 5788999999999999999999999999
Q ss_pred eecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1279 LDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1279 LDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
||||||+||.++++.+.+.+++ .++|+|+|+||+++++.+|++++|++|+
T Consensus 495 lDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~ 546 (585)
T TIGR01192 495 LDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGR 546 (585)
T ss_pred EECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCE
Confidence 9999999999999999887654 4899999999999999999999997764
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-53 Score=532.66 Aligned_cols=460 Identities=15% Similarity=0.175 Sum_probs=302.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-ccchhhcccCCCCCCccchhHHHHHHHHHHHHHHHHHhhHh----H--
Q 000711 814 IAPSIRHLTARLALGWRIRMTQHLLKSYLRK-NSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKP----S-- 886 (1338)
Q Consensus 814 ~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~~-~~ff~~~~~~~~~~~~~~Rls~D~~~l~~~l~~~~~~~i~~----~-- 886 (1338)
..+..+++......+...++...++++.++. ..||+. ...++..+|+++|++.+.......+..++.. +
T Consensus 52 ~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~----~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~ 127 (569)
T PRK10789 52 LRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLR----HRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAV 127 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC----CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444555555556666666654 356652 2346788999999999875443332222221 1
Q ss_pred -HHH-HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhcCccccccHHHHHhccchHHHHHHHHhhHHHhhhcCChHHHH
Q 000711 887 -VDI-LWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREK 964 (1338)
Q Consensus 887 -~~i-~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~~~~~~e~i~~~~~~~~e~ 964 (1338)
+.+ ++++|.++++.. ++ +++...+.....+...+...+.++..+.+.....+...+.++++.|+.++.+.
T Consensus 128 ~~~~~~~~~~~l~li~l----~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~ 199 (569)
T PRK10789 128 LIVMSTQISWQLTLLAL----LP----MPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQS 199 (569)
T ss_pred HHHHHHHHhHHHHHHHH----HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHH
Confidence 111 245666654321 11 11111111111122222223333333333334445556778999999888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhhhHHHHHHHHHHHHhhcccchhhhchHHHHHHHHHHHHHHHHHHH
Q 000711 965 AMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFL 1044 (1338)
Q Consensus 965 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~~~~~~~~~~~ 1044 (1338)
+.+.+...+..+......+............. .+...+.++++....... ..+.|.+..+.. +......
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~g~~lv~~g--~lt~g~l~a~~~----~~~~~~~ 268 (569)
T PRK10789 200 ALFAADAEDTGKKNMRVARIDARFDPTIYIAI-----GMANLLAIGGGSWMVVNG--SLTLGQLTSFVM----YLGLMIW 268 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcC--CcCHHHHHHHHH----HHHHHHH
Confidence 77766665555444333222222111111111 011111111211110000 013344433332 2334556
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHHHHHHhhcCCCCCCccCCccCCCCCCCCCCceEEeeeEEeCCC-ccccccccceEE
Q 000711 1045 AFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS-QKLLARQLTFEI 1123 (1338)
Q Consensus 1045 ~~~~~~~~~~~~~~~~~a~~Ri~~~~~~~~~~~~~~~~~~~~~~~~wp~~~~~g~I~f~nV~f~yp~-~~~vL~~lsf~I 1123 (1338)
++..+......+.....+.+|+.++.+.+++.++. .. .-| ...+.|+|+||+|.||+ ++++|+|+||+|
T Consensus 269 pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~----~~----~~~--~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i 338 (569)
T PRK10789 269 PMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDG----SE----PVP--EGRGELDVNIRQFTYPQTDHPALENVNFTL 338 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC----CC----CCC--CCCCcEEEEEEEEECCCCCCccccCeeEEE
Confidence 67777777888888889999999987643221110 00 001 12468999999999986 468999999999
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEEEEcCCCCCCCCCHHHHhcCCCchHHH
Q 000711 1124 VPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEA 1201 (1338)
Q Consensus 1124 ~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~~VpQdP~LF~GTIReNL~~p~~~~~~ 1201 (1338)
+|||+++||||||||||||+++|.|+|+|++|+|.+||.|++++ ..+|++++||||+|++|+||+||||.++.+
T Consensus 339 ~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~---- 414 (569)
T PRK10789 339 KPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRP---- 414 (569)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCC----
Confidence 99999999999999999999999999999999999999999876 355778999999999999999999987532
Q ss_pred HHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC-cccCCCChhHHHHHHHHHHhhcCCCEEEee
Q 000711 1202 ELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILD 1280 (1338)
Q Consensus 1202 ~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLD 1280 (1338)
+..|++++++++.+++++++.++|+|+||.+ ++|.+||||||||+|||||++++|+|+|||
T Consensus 415 ------------------~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlD 476 (569)
T PRK10789 415 ------------------DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILD 476 (569)
T ss_pred ------------------CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 1124455666677777777888899999998 578899999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1281 ECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1281 EATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
||||+||.++++.+.+.++. .++|+|+|+||+++++.+|+++++++|+
T Consensus 477 Epts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~ 526 (569)
T PRK10789 477 DALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGH 526 (569)
T ss_pred CccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCE
Confidence 99999999999999887654 5899999999999999999999997653
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-54 Score=535.95 Aligned_cols=183 Identities=24% Similarity=0.271 Sum_probs=153.2
Q ss_pred eEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEE-----------eCCCCc--------
Q 000711 449 GVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA-----------KPGVGS-------- 509 (1338)
Q Consensus 449 ~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~-----------~~~~~~-------- 509 (1338)
++++.|..+..+|++++ .+++||+++|+||||||||||+|+|+|+++|++|+|. ++|.+-
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~ 156 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLY 156 (590)
T ss_pred CceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHh
Confidence 36777854457999999 9999999999999999999999999999999999997 777541
Q ss_pred cccccEEEE----ecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHH
Q 000711 510 DLNKEIFYV----PQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQ 585 (1338)
Q Consensus 510 ~~~~~i~~v----~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQ 585 (1338)
....++++. +|.|.++.+|++||+.+. ...+++.++++.+++.+..++.+ .+|||||||
T Consensus 157 ~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---------~~~~~~~~~l~~l~l~~~~~~~~--------~~LSgGe~q 219 (590)
T PRK13409 157 NGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---------DERGKLDEVVERLGLENILDRDI--------SELSGGELQ 219 (590)
T ss_pred ccCcceeecccchhhhhhhhcchHHHHHHhh---------hHHHHHHHHHHHcCCchhhcCCh--------hhCCHHHHH
Confidence 111234544 455667778999999642 12356888999999988777755 689999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHcc--CCeEEEEecChhhHh-hcceEEEccC
Q 000711 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 586 RlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~~--~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
|++|||||+++|+++|||||||+||+.....+.+.+++. |+|+|+|||+++.+. .+|+++++.+
T Consensus 220 rv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~ 286 (590)
T PRK13409 220 RVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYG 286 (590)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999887654 999999999999875 6899999865
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-53 Score=508.91 Aligned_cols=192 Identities=25% Similarity=0.358 Sum_probs=155.6
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCccccccEEEEecCCC
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q~~~ 523 (1338)
.|+++|+++.| +++++++|+||++.+|++++|||+||||||||||+|+|...|++|+|..++ .-+++|++|++.
T Consensus 3 ~i~~~~ls~~~-g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~-----~~~v~~l~Q~~~ 76 (530)
T COG0488 3 MITLENLSLAY-GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK-----GLRVGYLSQEPP 76 (530)
T ss_pred eEEEeeeEEee-CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecC-----CceEEEeCCCCC
Confidence 58999999999 578999999999999999999999999999999999999999999999876 237999999999
Q ss_pred CCCC-CHHHHhcCCCCCCccc------------C------------------CCCHHHHHHHHHHcCCchHHhcCCCCcc
Q 000711 524 TAVG-TLRDQLIYPLTSDQEV------------E------------------PLTHGGMVELLKNVDLEYLLDRYPPEKE 572 (1338)
Q Consensus 524 l~~~-tl~eni~~~~~~~~~~------------~------------------~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 572 (1338)
.... |+.+.+.-+....... + ...+.++..++..+++.+. ++
T Consensus 77 ~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~------ 149 (530)
T COG0488 77 LDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DR------ 149 (530)
T ss_pred cCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cC------
Confidence 8765 9999887654210000 0 0001223333333333332 11
Q ss_pred ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHccCCeEEEEecChhhHh-hcceEEEccCC
Q 000711 573 INWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 573 ~~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
.-.+||||||.|++|||||+.+||+|+|||||++||.++..++-+.|++...|+|+||||-.++. -|++|+.++.+
T Consensus 150 --~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g 226 (530)
T COG0488 150 --PVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRG 226 (530)
T ss_pred --chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCC
Confidence 23689999999999999999999999999999999999999999999875339999999999885 68999988863
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-52 Score=518.11 Aligned_cols=458 Identities=19% Similarity=0.202 Sum_probs=301.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhcccCCCCCCccchhHHHHHHHHHHHHH-HHHHhhHh----
Q 000711 811 SSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSG-LVTGMVKP---- 885 (1338)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~~~~ff~~~~~~~~~~~~~~Rls~D~~~l~~~l~~-~~~~~i~~---- 885 (1338)
..+..+...++..+...++...+..+++++.++.+. . ...+..+++++|++.+...+.. .+..++..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~--~------~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~ 130 (544)
T TIGR01842 59 LGLLDALRSFVLVRIGEKLDGALNQPIFAASFSATL--R------RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMP 130 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc--c------CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334444444444455555555555555555554321 0 1123467899999988776554 22222211
Q ss_pred --HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhcCccccccHHHHHhccchHHHHHHHHhhHHHhhhcCChHHH
Q 000711 886 --SVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGARE 963 (1338)
Q Consensus 886 --~~~i~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~~~~~~e~i~~~~~~~~e 963 (1338)
++.+++++|.++++.. +.+++++++ .....+.......+.++..+.......+...+.++++.|+.+...
T Consensus 131 ~~~~~l~~~~~~l~li~l----~~~~l~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~ 202 (544)
T TIGR01842 131 IYLLVCFLLHPWIGILAL----GGAVVLVGL----ALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNL 202 (544)
T ss_pred HHHHHHHHHhhHHHHHHH----HHHHHHHHH----HHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHH
Confidence 1223445666554321 001111111 111111112222233333333444445556678999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhhhHHHHHHHHHHHHhhcccchhhhchHHHHHHHHHHHHHHHHHH
Q 000711 964 KAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSF 1043 (1338)
Q Consensus 964 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~~~~~~~~~~ 1043 (1338)
.+.+++.+++..+...+..+..........++... ...+.++++....... ..+.|.+..+.. +.....
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~g~~l~~~g--~it~g~l~a~~~----~~~~~~ 271 (544)
T TIGR01842 203 TKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIV-----LQSLVLGLGAYLAIDG--EITPGMMIAGSI----LVGRAL 271 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHcC--CCCHHHHHHHHH----HHHHHH
Confidence 77777766666554443333222221111111110 0111111221110000 023444433332 334556
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHHHHHHhhcCCCCCCccCCccCCCCCCCCCCceEEeeeEEeCCC-ccccccccceE
Q 000711 1044 LAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS-QKLLARQLTFE 1122 (1338)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~a~~Ri~~~~~~~~~~~~~~~~~~~~~~~~wp~~~~~g~I~f~nV~f~yp~-~~~vL~~lsf~ 1122 (1338)
.++..+......+.+...+.+|+.++.+.+++..+ .. ..+. ..+.|+|+||+|.||+ .+++|+|+||+
T Consensus 272 ~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~-----~~----~~~~--~~~~i~~~~v~~~y~~~~~~~l~~~~~~ 340 (544)
T TIGR01842 272 APIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP-----AM----PLPE--PEGHLSVENVTIVPPGGKKPTLRGISFR 340 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC-----CC----CCCC--CCCeEEEEEEEEEcCCCCccccccceEE
Confidence 67888888888889999999999999765322111 00 0111 2468999999999986 46899999999
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEEEEcCCCCCCCCCHHHHhcCCCchHH
Q 000711 1123 IVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREE 1200 (1338)
Q Consensus 1123 I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~~VpQdP~LF~GTIReNL~~p~~~~~ 1200 (1338)
|+|||++|||||||||||||+++|+|+|+|++|+|.+||.|++++ ..+|++++||||||++|+||+||||.+...
T Consensus 341 i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~--- 417 (544)
T TIGR01842 341 LQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGE--- 417 (544)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCC---
Confidence 999999999999999999999999999999999999999999887 345678999999999999999999975321
Q ss_pred HHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC-cccCCCChhHHHHHHHHHHhhcCCCEEEe
Q 000711 1201 AELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGIL 1279 (1338)
Q Consensus 1201 ~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiL 1279 (1338)
+..+++++++++.++++++++++|+|+||.+ ++|.+||||||||+|||||++++|+||||
T Consensus 418 -------------------~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ilil 478 (544)
T TIGR01842 418 -------------------NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVL 478 (544)
T ss_pred -------------------CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 1124445566677777788888899999987 57899999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1280 DECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1280 DEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
|||||+||.++++.+.+.+++ .++|+|+|+||+++++.+|++++|++|+
T Consensus 479 DEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~ 530 (544)
T TIGR01842 479 DEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGR 530 (544)
T ss_pred eCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCE
Confidence 999999999999999876653 4799999999999999999999997764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-51 Score=548.26 Aligned_cols=207 Identities=22% Similarity=0.278 Sum_probs=159.2
Q ss_pred ceEEeeeEEeCC--C----------ccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCC--CCceEEcCCCCC
Q 000711 1099 SISFSKLDIITP--S----------QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPV--VSGSLTKPSQHI 1164 (1338)
Q Consensus 1099 ~I~f~nV~f~yp--~----------~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~--~sG~I~idg~dI 1164 (1338)
.+.|+||+++.+ . ...+|+|+|++|+|||.+||+||||||||||+++|.|..++ .+|+|.++|.++
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 699999999653 1 23699999999999999999999999999999999999874 689999999887
Q ss_pred ccccCCcccEEEEcCCCCCCC-CCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhc
Q 000711 1165 DEEAGSGCGIFYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREE 1243 (1338)
Q Consensus 1165 ~~~~~lr~~i~~VpQdP~LF~-GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~ 1243 (1338)
+... .++.++||+|++.++. -|++|||.++.. ++.- .+ .. .+..+..+.++++.++|.+..
T Consensus 947 ~~~~-~~~~igyv~Q~d~~~~~lTV~E~L~~~a~--------lr~~--~~-~~--~~~~~~~v~~vl~~lgL~~~~---- 1008 (1470)
T PLN03140 947 KQET-FARISGYCEQNDIHSPQVTVRESLIYSAF--------LRLP--KE-VS--KEEKMMFVDEVMELVELDNLK---- 1008 (1470)
T ss_pred ChHH-hhhheEEEccccccCCCCcHHHHHHHHHH--------hCCC--CC-CC--HHHHHHHHHHHHHHCCChhHh----
Confidence 6432 2346999999998876 599999975310 0000 00 00 000123356677777775432
Q ss_pred ccCcccCc--ccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCCC--cc
Q 000711 1244 VGWDANLN--WEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPAL--IP 1316 (1338)
Q Consensus 1244 ~Gldt~~~--~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~~--i~ 1316 (1338)
|+.++ ....||||||||++|||+|+.+|+||+||||||+||..+...+.+.+++ .|+|||+++|.++. .+
T Consensus 1009 ---~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~ 1085 (1470)
T PLN03140 1009 ---DAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1085 (1470)
T ss_pred ---CCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHH
Confidence 33332 1246999999999999999999999999999999999999887776543 58999999999984 57
Q ss_pred cccceEEEec
Q 000711 1317 FHSLELRLID 1326 (1338)
Q Consensus 1317 ~~d~~l~l~~ 1326 (1338)
.+|+++.|.+
T Consensus 1086 ~~D~vllL~~ 1095 (1470)
T PLN03140 1086 AFDELLLMKR 1095 (1470)
T ss_pred hCCEEEEEcC
Confidence 8899999965
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-51 Score=507.41 Aligned_cols=508 Identities=16% Similarity=0.153 Sum_probs=338.8
Q ss_pred HHHHhcccCchhHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 92 AAILLSEMGKMGARDLLALVGIVVLRTALSNRL-AKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGT 170 (1338)
Q Consensus 92 ~~~~~p~~~~~~~~~l~~~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 170 (1338)
.++++++++ . ++..+++.++...+.+.. +.+.+.++|.+.. +... +..+++++++..++..+..|+...
T Consensus 5 ~~~~~~~~~----~-~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 74 (547)
T PRK10522 5 RLVWRQYRW----P-FISVMALSLASAALGIGLIAFINQRLIETADT-SLLV----LPEFLGLLLLLMAVTLGSQLALTT 74 (547)
T ss_pred HHHHHhhhH----H-HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cchH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555544 2 444555666666666654 5555666665432 1111 111212222222233444455554
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccccccCCC-CCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhchhh
Q 000711 171 LSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPK 249 (1338)
Q Consensus 171 l~~~~R~~lt~~l~~~~~~~~~~~~~~~~d~~-~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~~ 249 (1338)
++.+ +..++|.++++++...++++++++ .++..+|+++|++.+...+.. +..++..++..+.+.+ ++++++|.
T Consensus 75 ~~~~----~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~-l~~~~~~~~~~i~~~~-~l~~~~~~ 148 (547)
T PRK10522 75 LGHH----FVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVR-LPELVQGIILTLGSAA-YLAWLSPK 148 (547)
T ss_pred HHHH----HHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHhHH
Confidence 4444 888899999999999999998764 779999999999988765443 3344444444333333 34567888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-H
Q 000711 250 YVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVV-L 328 (1338)
Q Consensus 250 l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~-~ 328 (1338)
+++++++.+++..++..++.++..+...+.++..+++.....+..+++++++ ++.+..+ +.+.++|++..+..++. .
T Consensus 149 l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~-~~~~~~~~~~~~~~~~~~~ 226 (547)
T PRK10522 149 MLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAE-YVFENEYEPDAQEYRHHII 226 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHH-HHHHHHHhHHHHHHHhhhH
Confidence 8888777776666666667777777777777777777777777777888886 4444321 12234444444333221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 329 HDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSG 408 (1338)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~ 408 (1338)
+..........+........++.+ .++++.... .+.+...++. ..+..+..++..+...+..++....
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~~------~~~~~~~~pl~~l~~~~~~~~~~~~ 294 (547)
T PRK10522 227 RADTFHLSAVNWSNIMMLGAIGLV----FYMANSLGW--ADTNVAATYS------LTLLFLRTPLLSAVGALPTLLSAQV 294 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhc--CChHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111211211111100000111111 112222111 1122111111 1122244678888888889999999
Q ss_pred HHHHHHHHHHhhhhccccCCCCCCCCCCCCcCCCCcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHH
Q 000711 409 YADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLF 488 (1338)
Q Consensus 409 ~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl 488 (1338)
+.+|+.++++.+++.+. .. . . ..+..+.++++||+|.||+++++|+|+||++++||+++|+||||||||||+
T Consensus 295 a~~ri~~l~~~~~~~~~-~~--~--~---~~~~~~~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~ 366 (547)
T PRK10522 295 AFNKLNKLALAPYKAEF-PR--P--Q---AFPDWQTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLA 366 (547)
T ss_pred HHHHHHHHhcccccccc-cc--c--c---ccCcCceEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHH
Confidence 99999998654322110 00 0 0 001124699999999998767899999999999999999999999999999
Q ss_pred HHHcCCCCCCccEEEeCCCC------ccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCch
Q 000711 489 RVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY 562 (1338)
Q Consensus 489 ~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 562 (1338)
++|+|+++|++|+|.++|.+ .+++++++||||+|++|++|+++| +. ..+++++.++++.+++++
T Consensus 367 ~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~-------~~~~~~~~~~~~~~~l~~ 436 (547)
T PRK10522 367 MLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GK-------PANPALVEKWLERLKMAH 436 (547)
T ss_pred HHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cC-------chHHHHHHHHHHHcCCch
Confidence 99999999999999999975 245788999999999999999998 11 245678889999999887
Q ss_pred HHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhH
Q 000711 563 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV 638 (1338)
Q Consensus 563 ~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~ 638 (1338)
..+. +.+. ..|.+||||||||++||||++++|+++|||||||+||+++++.+++.+.+ .++|+|+||||++.+
T Consensus 437 ~~~~-~~~~--~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~ 513 (547)
T PRK10522 437 KLEL-EDGR--ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYF 513 (547)
T ss_pred hhhc-cccC--CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHH
Confidence 6653 2211 13679999999999999999999999999999999999999999887642 489999999999999
Q ss_pred hhcceEEEccCC
Q 000711 639 AFHDVVLSLDGE 650 (1338)
Q Consensus 639 ~~~d~i~~l~~~ 650 (1338)
+.+|+|++++++
T Consensus 514 ~~~d~i~~l~~G 525 (547)
T PRK10522 514 IHADRLLEMRNG 525 (547)
T ss_pred HhCCEEEEEECC
Confidence 999999999873
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-50 Score=455.63 Aligned_cols=503 Identities=19% Similarity=0.208 Sum_probs=339.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAF-LRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHT 185 (1338)
Q Consensus 107 l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~R~~lt~~l~~ 185 (1338)
++.+.+++.+...+.+..|...=+.||... .+..+.... ..++++...++..+..+++.++-++.-.++...+..
T Consensus 25 ~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s~~TLv~----Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~ 100 (580)
T COG4618 25 FIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSVPTLVM----LTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNG 100 (580)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCcchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334444455555566666666667777654 455555332 233333444455667777877777777778888877
Q ss_pred HHhcccccccccccCCCCCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHhchhhHHHHHHHHHHHHH
Q 000711 186 RYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLL---YTWRLCSYASPKYVFWILAYVLGAG 262 (1338)
Q Consensus 186 ~~~~~~~~~~~~~~d~~~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~---~~~~l~~~~~~~l~~~~l~~~~~~~ 262 (1338)
+.|......++.-. ..+ ...-.-+|.+.+++.+.. ..+.++++.-+ |.. +++.+.|.+.+++++.+++..
T Consensus 101 ~v~~a~~~~~l~~~--~~g-~~~Q~LrDL~qvR~Fltg---~g~~A~fDaPW~P~yl~-v~fl~Hp~lG~~a~~ga~iLv 173 (580)
T COG4618 101 PVFAASFSAPLLRR--GSG-DGLQPLRDLDQVRQFLTG---TGLTAFFDAPWMPLYLA-VIFLFHPWLGLIALAGAIILV 173 (580)
T ss_pred HHHHHHHhhHHhhc--CCC-ccccchhhHHHHHHHHcC---CCcchhcCCchHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 77765543333211 111 122345677765443322 13334444322 211 222345655555544333222
Q ss_pred HHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 263 TMMRNFSPAF-GKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFL 341 (1338)
Q Consensus 263 ~~~~~~~~~~-~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (1338)
.+. ++.-.. ++-..+..+.....+...+..+.|+|.|++.|......++|.+...+......+.--.+..++...-.+
T Consensus 174 ~la-~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~ 252 (580)
T COG4618 174 VLA-LLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRAL 252 (580)
T ss_pred HHH-HHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 222 121111 111122222333334455566669999999999999999999887776665444322222223222222
Q ss_pred HHHHHHHHHHHHHHHhHhcccccC-CcchhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000711 342 LKYLGATVAVILIIEPFFAGNLKP-DTSTLGRAKMLSNLRYHTSV-IISLFQSLGTLSISSRRLNRLSGYADRIHELMVI 419 (1338)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~g~~~~~~~~~~~~~~-~~~~~~~l~~l~~~~~~l~~~~~~~~ri~~~~~~ 419 (1338)
...+.. .++. .+..+.. +..|.|. +++. ++ +.....++-.....++.+.....+.+|+.+++..
T Consensus 253 Rm~lQs---~iLg----~GA~Lvi~ge~t~G~--mIA~-----SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~ 318 (580)
T COG4618 253 RMALQS---AVLG----LGAWLVIKGEITPGM--MIAG-----SILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAE 318 (580)
T ss_pred HHHHHH---HHHh----cceeeEEcCcCCcch--hhHH-----HHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222211 1111 1222221 2234442 2221 11 2234457777778889999999999999999987
Q ss_pred hhhccccCCCCCCCCCCCCcCCCCcEEEEeEEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCC
Q 000711 420 SRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV 498 (1338)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~ 498 (1338)
.++.... . ..+.+.+.+.+|++++..|+. +++++++||++++||.++|+||||||||||.|+|.|.|+|.
T Consensus 319 ~p~~~~~---m------~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~ 389 (580)
T COG4618 319 LPAAAER---M------PLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPT 389 (580)
T ss_pred CccccCC---C------CCCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccC
Confidence 6543210 0 112236789999999988764 69999999999999999999999999999999999999999
Q ss_pred ccEEEeCCCC------ccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCcc
Q 000711 499 SGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKE 572 (1338)
Q Consensus 499 ~G~i~~~~~~------~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 572 (1338)
+|.|++||.+ +++.++|||+||+--+|+|||.|||+-..+ +.+++++.++.+.++.|+++-++|++++
T Consensus 390 ~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~------~~d~~kIieAA~lAgvHelIl~lP~GYd 463 (580)
T COG4618 390 SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGE------EADPEKVIEAARLAGVHELILRLPQGYD 463 (580)
T ss_pred CCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccc------cCCHHHHHHHHHHcChHHHHHhCcCCcc
Confidence 9999999976 345689999999999999999999985432 3577889999999999999999999888
Q ss_pred cc---CCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH---ccCCeEEEEecChhhHhhcceEEE
Q 000711 573 IN---WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALVAFHDVVLS 646 (1338)
Q Consensus 573 ~~---~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~---~~~~t~i~itH~~~~~~~~d~i~~ 646 (1338)
+. .|..|||||||||+||||||.+|.+++||||-|+||.+.|..+.+.+. +.|.|+|+||||++.+..+|+|++
T Consensus 464 T~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilv 543 (580)
T COG4618 464 TRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILV 543 (580)
T ss_pred CccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeee
Confidence 74 578999999999999999999999999999999999999999998764 569999999999999999999999
Q ss_pred ccCC
Q 000711 647 LDGE 650 (1338)
Q Consensus 647 l~~~ 650 (1338)
|+++
T Consensus 544 l~~G 547 (580)
T COG4618 544 LQDG 547 (580)
T ss_pred ecCC
Confidence 9874
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-50 Score=546.18 Aligned_cols=461 Identities=17% Similarity=0.219 Sum_probs=319.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCC-CCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000711 166 YITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCS 244 (1338)
Q Consensus 166 ~l~~~l~~~~R~~lt~~l~~~~~~~~~~~~~~~~d~~-~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~ 244 (1338)
++...+..+.-.....+++.+.++++.+.|++||+.. .++..+|+++|++.+.+.+...+..++..++..+.+.+. +.
T Consensus 943 ~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~-i~ 1021 (1490)
T TIGR01271 943 FFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFV-VS 1021 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 3344444444444888999999999999999999875 679999999999998888777766666655544443333 23
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 000711 245 YASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324 (1338)
Q Consensus 245 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~ 324 (1338)
+++|.+++.++..+++..++..+..+....+........+.......+...+.++|++|+.|+.+.+++.+..+.....+
T Consensus 1022 ~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~ 1101 (1490)
T TIGR01271 1022 VLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANW 1101 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHH
Confidence 44554433222221111111122222222222222222233444555666799999999999999877776666444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 325 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLN 404 (1338)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~ 404 (1338)
........|.+....++...+...+ .++. ++... .+.+.+|.. + .+...+..++..+...+..+.
T Consensus 1102 ~~~~~~~~wl~~~~~~i~~~~~~~~-~~l~----~~~~~-~~~g~~g~~--l-------~~~~~l~~~l~~l~~~~~~le 1166 (1490)
T TIGR01271 1102 FLYLSTLRWFQMRIDIIFVFFFIAV-TFIA----IGTNQ-DGEGEVGII--L-------TLAMNILSTLQWAVNSSIDVD 1166 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHH----HHHhc-CCccHHHHH--H-------HHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344433332211111111 1111 11111 111223321 1 122333445566666777888
Q ss_pred HHHHHHHHHHHHHHhhhhccccCCCC-----------CCCCCCCCcCCCCcEEEEeEEEEcCC-CCeeeeeeeEEEeCCC
Q 000711 405 RLSGYADRIHELMVISRELSIEDKSP-----------QRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGS 472 (1338)
Q Consensus 405 ~~~~~~~ri~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~i~~~~v~~~~~~-~~~~l~~~sl~i~~G~ 472 (1338)
....+.+|+.++++.+++........ ........++..+.|+|+||++.|++ .+++|+|+||+|++||
T Consensus 1167 ~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~Ge 1246 (1490)
T TIGR01271 1167 GLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQ 1246 (1490)
T ss_pred HHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCC
Confidence 88999999999987655432110000 00000011233578999999999975 4789999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC------ccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCC
Q 000711 473 NLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPL 546 (1338)
Q Consensus 473 ~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~ 546 (1338)
+++|||+||||||||+++|+|+++ .+|+|.+||.+ .++|++++||||+|++|+||||+||.... ..
T Consensus 1247 kvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~-------~~ 1318 (1490)
T TIGR01271 1247 RVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE-------QW 1318 (1490)
T ss_pred EEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc-------CC
Confidence 999999999999999999999997 79999999976 34788999999999999999999995431 35
Q ss_pred CHHHHHHHHHHcCCchHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc
Q 000711 547 THGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA 623 (1338)
Q Consensus 547 ~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~ 623 (1338)
+|++++++|+.+++.+++.++|.+.++ +.|.+||||||||++|||||+++|+|||||||||+||.++++.|++.+++
T Consensus 1319 tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~ 1398 (1490)
T TIGR01271 1319 SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQ 1398 (1490)
T ss_pred CHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 789999999999999999998865443 46789999999999999999999999999999999999999999999986
Q ss_pred --cCCeEEEEecChhhHhhcceEEEccCC
Q 000711 624 --MGTSCITISHRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 624 --~~~t~i~itH~~~~~~~~d~i~~l~~~ 650 (1338)
.++|+|+||||++++..+|+|++|+++
T Consensus 1399 ~~~~~TvI~IaHRl~ti~~~DrIlvL~~G 1427 (1490)
T TIGR01271 1399 SFSNCTVILSEHRVEALLECQQFLVIEGS 1427 (1490)
T ss_pred HcCCCEEEEEecCHHHHHhCCEEEEEECC
Confidence 489999999999999999999999873
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-51 Score=507.36 Aligned_cols=260 Identities=13% Similarity=0.163 Sum_probs=209.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHhhcCCCCCCccCCccCCC-CCCCCCCceEEeeeEEeCCCc----c
Q 000711 1039 VSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKW-NSTDYQDSISFSKLDIITPSQ----K 1113 (1338)
Q Consensus 1039 ~~~~~~~~~~~~~~~~~~~~~~~a~~Ri~~~~~~~~~~~~~~~~~~~~~~~~w-p~~~~~g~I~f~nV~f~yp~~----~ 1113 (1338)
......++..+......+.....+.+|+.++.+.++++++....+... .... +.....+.|+|+||+|.||+. +
T Consensus 277 ~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~ 355 (555)
T TIGR01194 277 LLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDAD-NVLLLAHDKSVDSIELKDVHMNPKAPEGSEG 355 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccc-cccccccCCCCceEEEEEEEEEeCCCCCCcC
Confidence 345567888888888889999999999999876432211100000000 0000 001124689999999999753 4
Q ss_pred ccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEEEEcCCCCCCCCCHHHH
Q 000711 1114 LLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQ 1191 (1338)
Q Consensus 1114 ~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~~VpQdP~LF~GTIReN 1191 (1338)
++|+|+||+|++||++|||||||||||||+++|.|+|+|++|+|.+||.|+++. ..+|.++++|||||++|++|+++|
T Consensus 356 ~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n 435 (555)
T TIGR01194 356 FALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPD 435 (555)
T ss_pred ceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcc
Confidence 699999999999999999999999999999999999999999999999999987 345678999999999999999999
Q ss_pred hcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCCChhHHHHHHHHHHhh
Q 000711 1192 IIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFF 1271 (1338)
Q Consensus 1192 L~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSgGQrQrlaiARAlL 1271 (1338)
+ .|... +++++++++.+++++.++.+|+||||. .+||||||||||||||++
T Consensus 436 ~-~~~~~------------------------~~~~~~~~~~~~l~~~~~~lp~g~~t~----~~LSgGq~qRlalaRall 486 (555)
T TIGR01194 436 E-GEHAS------------------------LDNAQQYLQRLEIADKVKIEDGGFSTT----TALSTGQQKRLALICAWL 486 (555)
T ss_pred c-ccchh------------------------HHHHHHHHHHcCCchhhcccccccCCc----ccCCHHHHHHHHHHHHHH
Confidence 6 24322 334555667777777888889999986 579999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHH-H---hcCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1272 HKPKFGILDECTNATSVDVEEQLYRLA-K---DMGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1272 r~p~ILiLDEATSaLD~~te~~i~~~~-~---~~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
++|+|||||||||+||+++|+.+++.+ + ..++|+|+||||+++++.+|++++|++|+
T Consensus 487 ~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~ 547 (555)
T TIGR01194 487 EDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGC 547 (555)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCE
Confidence 999999999999999999999987633 2 35899999999999999999999997764
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-49 Score=508.88 Aligned_cols=472 Identities=21% Similarity=0.269 Sum_probs=349.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCC-CCCchhHHHccHHHHHHHHHHHH
Q 000711 147 ISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELV 225 (1338)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~R~~lt~~l~~~~~~~~~~~~~~~~d~~-~~n~~qRit~Di~~~~~~~~~l~ 225 (1338)
+..+.+++++.+++..+..+.--..+++ -.+++|++.++++.+-||+|||.. .|...+|.+.|++.+...+...+
T Consensus 861 ~~vY~~l~~~~~~~~~~rs~~~~~~~l~----aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~ 936 (1381)
T KOG0054|consen 861 LGVYALLGVASSLLTLLRSFLFAKGGLK----ASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTL 936 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHH
Confidence 4445555555555555555666666666 778899999999999999999976 67899999999999888777766
Q ss_pred HHhHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHH
Q 000711 226 QDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQ----LHSRLRTHAESIA 301 (1338)
Q Consensus 226 ~~~l~~~~~~~~~~~~l~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~r~----~~~~i~~~~e~I~ 301 (1338)
..++..++..+... .+..+..|..++.++.. +++..++.+.+.+..++..+.|+.-|. ...+...+.-+|+
T Consensus 937 ~~~~~~~~~~l~~~-~vi~~~~P~fli~~~pl----~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIR 1011 (1381)
T KOG0054|consen 937 EFFLQSLLNVLGIL-VVISYVTPWFLIAIIPL----GVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIR 1011 (1381)
T ss_pred HHHHHHHHHHHHHH-HHhhHHhHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceee
Confidence 66666555443322 22233344433332222 222333455555555666667765553 3455556888999
Q ss_pred HhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccccCCcchhhHHHHHHHHHH
Q 000711 302 FYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRY 381 (1338)
Q Consensus 302 ~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~ 381 (1338)
+|+.|+++.++...+-+...+.+......++|+++-..++...+..+.++++++ ..... .+.+..|.
T Consensus 1012 Af~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl---~~~~~-~~~g~vGL--------- 1078 (1381)
T KOG0054|consen 1012 AFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVL---LPSGL-ISPGLVGL--------- 1078 (1381)
T ss_pred eccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccCCC-CCcchHHH---------
Confidence 999999998766666665555555556667777776665533332222222221 11111 11222331
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCcCCCCcEEEEeEEEEcCC-CCee
Q 000711 382 HTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT-GNVL 460 (1338)
Q Consensus 382 ~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~-~~~~ 460 (1338)
..++..++.+.+.++......+..-..+.+||.|..+.++|.+.. .+...+...++..|.|+|+|++..|.. ..++
T Consensus 1079 slsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~---~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~V 1155 (1381)
T KOG0054|consen 1079 SLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLE---IEESRPPPSWPSKGEIEFEDLSLRYRPNLPLV 1155 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCC---CcCCCCCCCCCCCCeEEEEEeEEEeCCCCcch
Confidence 123344444556666667777888889999999999876651111 111112334667899999999998854 4789
Q ss_pred eeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC------ccccccEEEEecCCCCCCCCHHHHhc
Q 000711 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLI 534 (1338)
Q Consensus 461 l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v~Q~~~l~~~tl~eni~ 534 (1338)
|+|+||+|+|||+++|||++|||||||..+|-++.+|.+|+|.+||.| .++|++++.+||+|.+|+||+|.|+-
T Consensus 1156 Lk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLD 1235 (1381)
T KOG0054|consen 1156 LKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLD 1235 (1381)
T ss_pred hcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccC
Confidence 999999999999999999999999999999999999999999999987 47899999999999999999999984
Q ss_pred CCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCc--c-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 000711 535 YPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEK--E-INWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTT 611 (1338)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--~-~~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~ 611 (1338)
-- +..+|++++++|+.|+|.+.+.++|.+. . .+.|.++|-||||.++|||||+++++||+|||||+++|+
T Consensus 1236 Pf-------~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~ 1308 (1381)
T KOG0054|consen 1236 PF-------DEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDP 1308 (1381)
T ss_pred cc-------cccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCCh
Confidence 32 3468999999999999999999988643 2 367999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc--cCCeEEEEecChhhHhhcceEEEccCC
Q 000711 612 DMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 612 ~~~~~i~~~l~~--~~~t~i~itH~~~~~~~~d~i~~l~~~ 650 (1338)
++...|++.+++ .++|||.|+||++++-++|+|+|||++
T Consensus 1309 ~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G 1349 (1381)
T KOG0054|consen 1309 ETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAG 1349 (1381)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCC
Confidence 999999999998 499999999999999999999999974
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-49 Score=436.11 Aligned_cols=445 Identities=19% Similarity=0.237 Sum_probs=306.9
Q ss_pred HHHHHHHHhcccccccccccCCCCCCchhHHHc----cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhchhhHHHHHH
Q 000711 180 TKLIHTRYFENMAYYKISHVDGRITHPEQRLAS----DVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWIL 255 (1338)
Q Consensus 180 t~~l~~~~~~~~~~~~~~~~d~~~~n~~qRit~----Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~l 255 (1338)
++.+.-+-|.|+..+.+.|+-++...+.+|..+ -|+.+... .+...+..++........++...+|.+.++++
T Consensus 14 ~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~---~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t~ 90 (497)
T COG5265 14 VRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRW---ILFNILPTLVEISLVAVILWRVYGWWFALTTL 90 (497)
T ss_pred HHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHH---HHHHhhHHHHHHHHHHHHHHhhcccHHHHHHH
Confidence 334444556677777777765555555555432 33333222 23333333443333333334445666666554
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHH--HHHHHHHH-HHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 256 AYVLGAGTMMRNFSPAFGKLMSKEQ--QLEGEYRQ-LHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHW 332 (1338)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~l~~~~~--~~e~~~r~-~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~ 332 (1338)
+.+.+..+++....-. +...+.+ +...+... ....+. |-|+||.|+.|+.|..+.....+...+...+......
T Consensus 91 vtv~lY~~ftv~~s~w--r~~~rr~~n~aDs~a~~~aidsLl-nfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~ 167 (497)
T COG5265 91 VTVILYLLFTVIVSDW--RTDFRRLMNNADSDANAKAIDSLL-NFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLL 167 (497)
T ss_pred HHHHHHHHhheeehhh--hHHHHHhhhhhhhHHHHHHHHHHh-hhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHH
Confidence 4443332222111111 1111222 22222222 233343 8899999999999985544433333322222212222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--HhcccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 333 WFGMIQDFLLKYLGATVAVILIIEP--FFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYA 410 (1338)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~ 410 (1338)
++.+.+..+ ++.....++...+ +..|. .|.|...+. ..++.+...++.-+..+++++.+...-.
T Consensus 168 ~Ln~gQ~~I---~~~~l~~~m~~s~~~v~~g~-----~TvgD~V~~------Nall~qls~Plnflg~~Yrei~q~ltdm 233 (497)
T COG5265 168 VLNFGQTAI---FSTGLRVMMTMSALGVEEGQ-----LTVGDLVNV------NALLFQLSIPLNFLGFSYREIRQALTDM 233 (497)
T ss_pred HHHHhhHHH---HHHHHHHHHhhcHHHHhhcc-----CCchhHHhH------HHHHhhhhhhhhhhHHHHHHHHHhhhhH
Confidence 333333332 1222222222211 22233 356654332 2345566678888889999999999999
Q ss_pred HHHHHHHHhhhhccccCCCCCCCCCCCCcCCCCcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHH
Q 000711 411 DRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRV 490 (1338)
Q Consensus 411 ~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~ 490 (1338)
++.+++++.+.+.......+ ...+...+.+.|+||+|.|...+++|+++||++++|+.++|+||+|+||||++++
T Consensus 234 e~mfdLl~~~~~v~d~pda~-----~L~~~~~g~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rl 308 (497)
T COG5265 234 EKMFDLLDVEAEVSDAPDAP-----PLWPVRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRL 308 (497)
T ss_pred HHHHHhhccchhhccCCCCc-----cccccccceEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHH
Confidence 99999988766654211110 0001235779999999999888999999999999999999999999999999999
Q ss_pred HcCCCCCCccEEEeCCCC------ccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHH
Q 000711 491 LGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLL 564 (1338)
Q Consensus 491 l~g~~~~~~G~i~~~~~~------~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 564 (1338)
|.++|++++|.|.+||+| ..+|+.||.|||+..||+.|+..||.|+.+. .+++++..+++.+.+++++
T Consensus 309 lfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~------at~eev~aaa~~aqi~~fi 382 (497)
T COG5265 309 LFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPD------ATAEEVGAAAEAAQIHDFI 382 (497)
T ss_pred HHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCcc------ccHHHHHHHHHHhhhhHHH
Confidence 999999999999999987 3578899999999999999999999999754 6889999999999999999
Q ss_pred hcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhHh
Q 000711 565 DRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA 639 (1338)
Q Consensus 565 ~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~~ 639 (1338)
..+|.+.++ ++|-.||||||||+||||+++++|+|++|||+|||||.++|+.|+..+++ .|+|.++|+||++++-
T Consensus 383 ~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~ 462 (497)
T COG5265 383 QSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTII 462 (497)
T ss_pred HhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhcc
Confidence 999987665 46788999999999999999999999999999999999999999999986 5999999999999999
Q ss_pred hcceEEEccCCCceEEee
Q 000711 640 FHDVVLSLDGEGEWRVHD 657 (1338)
Q Consensus 640 ~~d~i~~l~~~g~~~~~~ 657 (1338)
.+|.|++|+++ ..++.
T Consensus 463 ~adeiivl~~g--~i~er 478 (497)
T COG5265 463 DADEIIVLDNG--RIVER 478 (497)
T ss_pred CCceEEEeeCC--EEEec
Confidence 99999999973 34443
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=441.49 Aligned_cols=338 Identities=24% Similarity=0.319 Sum_probs=249.3
Q ss_pred HHHHhhHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhhhHHHHHHHHHHHHhhcccchhhhc
Q 000711 945 ERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVST 1024 (1338)
Q Consensus 945 ~~~~~~~e~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1024 (1338)
+....|+|.|++.+-.....++..+...+.++......-+...++.....+- .+......++.-|.++... .+
T Consensus 202 ~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~R-m~lQs~iLg~GA~Lvi~ge------~t 274 (580)
T COG4618 202 DATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALR-MALQSAVLGLGAWLVIKGE------IT 274 (580)
T ss_pred HHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHhcceeeEEcCc------CC
Confidence 4455588999998876666666555555555443322222222222111111 1111111122112111110 12
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHhhcCCCCCCccCCccCCCCCCCCCCceEEee
Q 000711 1025 QGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSK 1104 (1338)
Q Consensus 1025 ~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ri~~~~~~~~~~~~~~~~~~~~~~~~wp~~~~~g~I~f~n 1104 (1338)
+|.+... ....+..+.++-......+++.....+-.|+.++++..+...+. .|-+.++|.+..++
T Consensus 275 ~G~mIA~----SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~-----------m~LP~P~g~L~Ve~ 339 (580)
T COG4618 275 PGMMIAG----SILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAER-----------MPLPAPQGALSVER 339 (580)
T ss_pred cchhhHH----HHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCC-----------CCCCCCCceeeEee
Confidence 2222111 11234566778888888888988889999999987664332221 11222479999999
Q ss_pred eEEeCCC-ccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEEEEcCCC
Q 000711 1105 LDIITPS-QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRP 1181 (1338)
Q Consensus 1105 V~f~yp~-~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~~VpQdP 1181 (1338)
+++.-|+ .+|+|+|+||.++|||-+||+||||||||||.++|.|.|+|.+|.|.+||-|++.. +.+.++|+|.|||-
T Consensus 340 l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdV 419 (580)
T COG4618 340 LTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDV 419 (580)
T ss_pred eeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccc
Confidence 9998776 57999999999999999999999999999999999999999999999999999998 45677899999999
Q ss_pred CCCCCCHHHHhc-CC-CchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC-cccCCCCh
Q 000711 1182 YTCLGTLRDQII-YP-LSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSL 1258 (1338)
Q Consensus 1182 ~LF~GTIReNL~-~p-~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSg 1258 (1338)
-||+|||.|||+ +. +...+.+++|++.|+.|| ++-++|+||||.+ +.|..|||
T Consensus 420 eLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHe------------------------lIl~lP~GYdT~iG~~G~~LSg 475 (580)
T COG4618 420 ELFDGTIAENIARFGEEADPEKVIEAARLAGVHE------------------------LILRLPQGYDTRIGEGGATLSG 475 (580)
T ss_pred eecCCcHHHHHHhccccCCHHHHHHHHHHcChHH------------------------HHHhCcCCccCccCCCCCCCCc
Confidence 999999999996 22 445566788888876533 4556689999998 47889999
Q ss_pred hHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHH---HhcCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1259 GEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLA---KDMGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1259 GQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~---~~~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
||||||++|||+..+|++++||||-|+||.+-|.++.+.+ +..|+|+|+||||++.+...|++++|.+|.
T Consensus 476 GQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~ 548 (580)
T COG4618 476 GQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGR 548 (580)
T ss_pred hHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCCh
Confidence 9999999999999999999999999999999999887765 347999999999999999999999998764
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-48 Score=480.78 Aligned_cols=246 Identities=17% Similarity=0.160 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHhhcCCCCCCccCCccCCCCCCCCCCceEEeeeEEeCCCccccccccce
Q 000711 1042 SFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTF 1121 (1338)
Q Consensus 1042 ~~~~~~~~~~~~~~~~~~~~a~~Ri~~~~~~~~~~~~~~~~~~~~~~~~wp~~~~~g~I~f~nV~f~yp~~~~vL~~lsf 1121 (1338)
...++..+......+.....+.+|+.++.+.+++.+. ... . +.+ ..+.|+|+||+|+||+.+++|+|+||
T Consensus 275 ~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~----~~~-~----~~~-~~~~i~~~~v~f~y~~~~~~l~~i~~ 344 (547)
T PRK10522 275 LRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEF----PRP-Q----AFP-DWQTLELRNVTFAYQDNGFSVGPINL 344 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc----ccc-c----ccC-cCceEEEEEEEEEeCCCCeEEecceE
Confidence 3456777777778888888999999998543221110 000 0 011 13579999999999977789999999
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEEEEcCCCCCCCCCHHHHhcCCCchH
Q 000711 1122 EIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSRE 1199 (1338)
Q Consensus 1122 ~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~~VpQdP~LF~GTIReNL~~p~~~~ 1199 (1338)
+|+|||++|||||||||||||+++|+|+|+|++|+|.+||.|+++. ..+|++++||||||++|+||+++| .+...
T Consensus 345 ~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n--~~~~~- 421 (547)
T PRK10522 345 TIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE--GKPAN- 421 (547)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc--cCchH-
Confidence 9999999999999999999999999999999999999999999876 356778999999999999999998 12212
Q ss_pred HHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCCChhHHHHHHHHHHhhcCCCEEEe
Q 000711 1200 EAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGIL 1279 (1338)
Q Consensus 1200 ~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSgGQrQrlaiARAlLr~p~ILiL 1279 (1338)
++.+.++++.+++.+.++. ++|.. .|.+||||||||++||||++++|+||||
T Consensus 422 -----------------------~~~~~~~~~~~~l~~~~~~-~~~~~----~G~~LSgGq~qRl~lARal~~~~~ilil 473 (547)
T PRK10522 422 -----------------------PALVEKWLERLKMAHKLEL-EDGRI----SNLKLSKGQKKRLALLLALAEERDILLL 473 (547)
T ss_pred -----------------------HHHHHHHHHHcCCchhhhc-cccCC----CCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 2233445555555443332 22211 2678999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHH----hcCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1280 DECTNATSVDVEEQLYRLAK----DMGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1280 DEATSaLD~~te~~i~~~~~----~~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
|||||+||.++|+.+.+.+. ..++|+|+||||+++++.+|+++++++|+
T Consensus 474 DE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~ 526 (547)
T PRK10522 474 DEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQ 526 (547)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCE
Confidence 99999999999998876543 24899999999999999999999997764
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=455.15 Aligned_cols=199 Identities=28% Similarity=0.374 Sum_probs=165.2
Q ss_pred CcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc-------cccccE
Q 000711 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------DLNKEI 515 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~-------~~~~~i 515 (1338)
..++++|++++|+ +.++|+|+||++.+||+++++|.||+|||||+|+|+|.|+|++|+|.++|... .....|
T Consensus 7 ~ll~~~~i~K~Fg-gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 7 PLLELRGISKSFG-GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred ceeeeecceEEcC-CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 3689999999996 57899999999999999999999999999999999999999999999999641 234579
Q ss_pred EEEecCCCCC-CCCHHHHhcCCCCCCcccCCCC----HHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHH
Q 000711 516 FYVPQRPYTA-VGTLRDQLIYPLTSDQEVEPLT----HGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1338)
Q Consensus 516 ~~v~Q~~~l~-~~tl~eni~~~~~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalA 590 (1338)
..|+|++.++ +.||.|||.++..........+ .++..++|+.+++....+.. -.+||+||||.|+||
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~--------v~~LsiaqrQ~VeIA 157 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTL--------VGDLSIAQRQMVEIA 157 (500)
T ss_pred EEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhh--------hhhCCHHHHHHHHHH
Confidence 9999999875 5699999988765432111122 34456677777775222222 268999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHH---ccCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 591 Ral~~~p~illLDEpts~LD~~~~~~i~~~l~---~~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
||+..+++++|||||||+|+....+.+++.++ +.|.++|+||||++.+ +.||+|.+|.++
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG 221 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDG 221 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCC
Confidence 99999999999999999999998888887654 5699999999999877 589999999863
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-46 Score=423.28 Aligned_cols=198 Identities=28% Similarity=0.368 Sum_probs=169.0
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC-------ccccccEE
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEIF 516 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~-------~~~~~~i~ 516 (1338)
.++++++++.|| +..+++|+||+|++||+.+|+|+||+|||||+++|.|+|+|++|+|.++|+. +..+..||
T Consensus 4 ~l~~~~itK~f~-~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIG 82 (501)
T COG3845 4 ALEMRGITKRFP-GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIG 82 (501)
T ss_pred eEEEeccEEEcC-CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCc
Confidence 589999999998 7889999999999999999999999999999999999999999999999975 23456799
Q ss_pred EEecCCCCCC-CCHHHHhcCCCCCCcc---cCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHH
Q 000711 517 YVPQRPYTAV-GTLRDQLIYPLTSDQE---VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1338)
Q Consensus 517 ~v~Q~~~l~~-~tl~eni~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARa 592 (1338)
+|+|++.+++ .|+.|||..+...... ......+++.++.+..|++-..+... ..||-|||||+.|-+|
T Consensus 83 MVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V--------~dLsVG~qQRVEIlKa 154 (501)
T COG3845 83 MVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKV--------ADLSVGEQQRVEILKA 154 (501)
T ss_pred EEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcccee--------ecCCcchhHHHHHHHH
Confidence 9999998865 5999999998754210 01123456777788888765544433 5799999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHH---ccCCeEEEEecChhhHh-hcceEEEccCC
Q 000711 593 FYHKPKFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 593 l~~~p~illLDEpts~LD~~~~~~i~~~l~---~~~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
||++|++||||||||-|-|...+++++.++ +.|+|||+|||++..+. .||++-+|.++
T Consensus 155 Lyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~G 216 (501)
T COG3845 155 LYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRG 216 (501)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCC
Confidence 999999999999999999999999888765 46999999999999875 69999999863
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=370.94 Aligned_cols=198 Identities=28% Similarity=0.379 Sum_probs=173.0
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC-------ccccccEE
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEIF 516 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~-------~~~~~~i~ 516 (1338)
.|+++||+++|. +..+|+|+|++|++||.++|+||||||||||+|+|.|+.+|++|+|.++|.+ ..+|+++|
T Consensus 2 mi~i~~l~K~fg-~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG 80 (240)
T COG1126 2 MIEIKNLSKSFG-DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG 80 (240)
T ss_pred eEEEEeeeEEeC-CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC
Confidence 589999999994 6789999999999999999999999999999999999999999999999953 23678999
Q ss_pred EEecCCCCCC-CCHHHHhcCCCCC-CcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000711 517 YVPQRPYTAV-GTLRDQLIYPLTS-DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1338)
Q Consensus 517 ~v~Q~~~l~~-~tl~eni~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1338)
+|+|+..||+ .|+.||+.++... .........+...+.|+.+||.+-.+.+| .+||||||||+||||||.
T Consensus 81 mVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP--------~qLSGGQqQRVAIARALa 152 (240)
T COG1126 81 MVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP--------AQLSGGQQQRVAIARALA 152 (240)
T ss_pred eecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc--------cccCcHHHHHHHHHHHHc
Confidence 9999999886 5999999986421 11111223456678899999999999999 799999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHH---HccCCeEEEEecChhhHh-hcceEEEccCC
Q 000711 595 HKPKFAILDECTSAVTTDMEERFCAKV---RAMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 595 ~~p~illLDEpts~LD~~~~~~i~~~l---~~~~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
.+|+++++|||||||||+...++.+.+ .+.|.|.|+|||.+.+.+ .+|+|+.|+++
T Consensus 153 M~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G 212 (240)
T COG1126 153 MDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQG 212 (240)
T ss_pred CCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCC
Confidence 999999999999999999998877765 456999999999999986 68999999973
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-43 Score=370.77 Aligned_cols=199 Identities=28% Similarity=0.359 Sum_probs=175.9
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC-ccccccEEEEecCC
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQRP 522 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~-~~~~~~i~~v~Q~~ 522 (1338)
.+++++|++.|++ ..+|+|+||+|++||+++|+||||||||||||+|+|+.+|++|+|.++|.. .....+++||+|++
T Consensus 3 ~l~i~~v~~~f~~-~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~ 81 (248)
T COG1116 3 LLEIEGVSKSFGG-VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQED 81 (248)
T ss_pred eEEEEeeEEEeCc-eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccC
Confidence 5889999999965 889999999999999999999999999999999999999999999999865 33456899999999
Q ss_pred CCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000711 523 YTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601 (1338)
Q Consensus 523 ~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ill 601 (1338)
.+++ -|++||+.++............+++.++|+.+||.++.+++| .+||||||||+||||||+.+|++|+
T Consensus 82 ~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P--------~qLSGGMrQRVaiARAL~~~P~lLL 153 (248)
T COG1116 82 ALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP--------HQLSGGMRQRVAIARALATRPKLLL 153 (248)
T ss_pred cccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc--------cccChHHHHHHHHHHHHhcCCCEEE
Confidence 8876 599999999876432222334567899999999999999999 7999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHH----ccCCeEEEEecChhhH-hhcceEEEccCCC
Q 000711 602 LDECTSAVTTDMEERFCAKVR----AMGTSCITISHRPALV-AFHDVVLSLDGEG 651 (1338)
Q Consensus 602 LDEpts~LD~~~~~~i~~~l~----~~~~t~i~itH~~~~~-~~~d~i~~l~~~g 651 (1338)
||||++|||..|+..+++.+. +.++|+++|||+.+.. ..+|+|++|.++.
T Consensus 154 lDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P 208 (248)
T COG1116 154 LDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRP 208 (248)
T ss_pred EcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCC
Confidence 999999999999998888664 4589999999999865 5799999998753
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=379.46 Aligned_cols=199 Identities=27% Similarity=0.375 Sum_probs=178.9
Q ss_pred cEEEEeEEEEcCCC----CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC---------cc
Q 000711 444 YIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SD 510 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~----~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~---------~~ 510 (1338)
+|++++|++.|+.+ .++++|+||+|++||+.+|+|+||+|||||+|++.++-.|++|+|.++|.+ ..
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 47999999988752 479999999999999999999999999999999999999999999999965 23
Q ss_pred ccccEEEEecCCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHH
Q 000711 511 LNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1338)
Q Consensus 511 ~~~~i~~v~Q~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlal 589 (1338)
.|++||++||++.|+. .|+.+|+.||..-....+..-..++.+.|+.+||.+..+++| .+|||||||||+|
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP--------~qLSGGQKQRVaI 152 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP--------AQLSGGQKQRVAI 152 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc--------hhcCcchhhHHHH
Confidence 5789999999999887 699999999986544323334567889999999999999999 7999999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHh-hcceEEEccCC
Q 000711 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 590 ARal~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
||||..+|++|+.|||||||||++.+.|.+.|++ .|.|+++|||.++.++ .||++.+|+++
T Consensus 153 ARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G 218 (339)
T COG1135 153 ARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQG 218 (339)
T ss_pred HHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCC
Confidence 9999999999999999999999999999998864 5999999999999986 79999999973
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=381.89 Aligned_cols=184 Identities=22% Similarity=0.242 Sum_probs=137.7
Q ss_pred CceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccccCCcccEEEE
Q 000711 1098 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYV 1177 (1338)
Q Consensus 1098 g~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~~lr~~i~~V 1177 (1338)
..|.|+||+|.|++.+.++++++|-|.++++||+|||+|+|||||++++.+...|..|.|..... .++++-
T Consensus 388 pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H---------~~~~~y 458 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH---------NKLPRY 458 (614)
T ss_pred CeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc---------ccchhh
Confidence 36999999999998889999999999999999999999999999999999999999999863322 123322
Q ss_pred cCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCCC
Q 000711 1178 PQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 1257 (1338)
Q Consensus 1178 pQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LS 1257 (1338)
-|. .-+.++|-....+-...+.+. +-..+.+..++..+||... .++-.-.+||
T Consensus 459 ~Qh-------~~e~ldl~~s~le~~~~~~~~-----------~~~~e~~r~ilgrfgLtgd---------~q~~p~~~LS 511 (614)
T KOG0927|consen 459 NQH-------LAEQLDLDKSSLEFMMPKFPD-----------EKELEEMRSILGRFGLTGD---------AQVVPMSQLS 511 (614)
T ss_pred hhh-------hHhhcCcchhHHHHHHHhccc-----------cchHHHHHHHHHHhCCCcc---------ccccchhhcc
Confidence 222 223333222221211111110 1123456677777777421 1111235899
Q ss_pred hhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHhcCCeEEEeccCCCCccc
Q 000711 1258 LGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPF 1317 (1338)
Q Consensus 1258 gGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~~~~TvI~IAHRl~~i~~ 1317 (1338)
+|||-|+++||.+++.|.+|+|||||++||.++...+.+.+.+..-+||+|+|..-+|.-
T Consensus 512 ~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~q 571 (614)
T KOG0927|consen 512 DGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDFRLISQ 571 (614)
T ss_pred cccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCCceeeeechhhHHHH
Confidence 999999999999999999999999999999999999999998888899999999876643
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=345.42 Aligned_cols=198 Identities=26% Similarity=0.356 Sum_probs=176.4
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC---------cccccc
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SDLNKE 514 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~---------~~~~~~ 514 (1338)
+|+|+||++.|+++.++|+|+||+|++||++.|+||||||||||+|+|.+...|+.|+|.++|.+ .-+|++
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 47999999999999889999999999999999999999999999999999999999999999976 136789
Q ss_pred EEEEecCCCC-CCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHH
Q 000711 515 IFYVPQRPYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1338)
Q Consensus 515 i~~v~Q~~~l-~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal 593 (1338)
||+|+|+.-+ ..-|+.||+.||..-.......-.+++.++|+.+||.+-...+| .+||||||||++||||+
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP--------~~LSGGEQQRvaIARAi 152 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP--------SQLSGGEQQRVAIARAI 152 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc--------cccCchHHHHHHHHHHH
Confidence 9999999875 45699999999976543333334567889999999999999999 69999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHhhc-ceEEEccC
Q 000711 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFH-DVVLSLDG 649 (1338)
Q Consensus 594 ~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~~~-d~i~~l~~ 649 (1338)
+++|++||.||||.+||++...+|++.+.+ .|.||++.||+.+++... .+++.+++
T Consensus 153 V~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~ 212 (223)
T COG2884 153 VNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALED 212 (223)
T ss_pred ccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeC
Confidence 999999999999999999999999888765 599999999999999754 56777765
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=365.43 Aligned_cols=198 Identities=30% Similarity=0.422 Sum_probs=170.4
Q ss_pred EEEEeEEEEcCCC---CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC-c--------c-c
Q 000711 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S--------D-L 511 (1338)
Q Consensus 445 i~~~~v~~~~~~~---~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~-~--------~-~ 511 (1338)
++++||++.|..+ .++|+++||+|++||+++|+|||||||||||++|.|+..|++|.|.++|.+ . . .
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 5789999988654 379999999999999999999999999999999999999999999999964 1 1 2
Q ss_pred cccEEEEecCCCCC-CCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHh-cCCCCccccCCCCCChhHHHHHHH
Q 000711 512 NKEIFYVPQRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLD-RYPPEKEINWGDELSLGEQQRLGM 589 (1338)
Q Consensus 512 ~~~i~~v~Q~~~l~-~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~~~~~g~~LSgGqkQRlal 589 (1338)
+++||||+|+..|. ..|++|||.+|............++..++++.+|+++... +.| .+||||||||+||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p--------~eLSGGqqQRVAI 153 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP--------SELSGGQQQRVAI 153 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc--------hhcCHHHHHHHHH
Confidence 46799999998865 5699999997653322111123566788899999997777 667 6899999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHhhcceEEEccCC
Q 000711 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 590 ARal~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~~~d~i~~l~~~ 650 (1338)
||||+++|++++.||||++||.++.+.+++.+++ .|+|+|+|||++....+||+++.+.++
T Consensus 154 ARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG 218 (226)
T COG1136 154 ARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDG 218 (226)
T ss_pred HHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999998764 489999999999999999999999874
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-42 Score=386.34 Aligned_cols=206 Identities=20% Similarity=0.221 Sum_probs=183.1
Q ss_pred CceEEeeeEEeCCC-ccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccE
Q 000711 1098 DSISFSKLDIITPS-QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGI 1174 (1338)
Q Consensus 1098 g~I~f~nV~f~yp~-~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i 1174 (1338)
|.|+|+||++.||+ .+++|+|+||+|++||++|||||||||||||+++|+|+++ .+|+|.+||.++... ..+|++|
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 57999999999974 5679999999999999999999999999999999999998 789999999999766 3456689
Q ss_pred EEEcCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC-ccc
Q 000711 1175 FYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWE 1253 (1338)
Q Consensus 1175 ~~VpQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g 1253 (1338)
+||||+|.+|++|+++|+++ ... ..++.++++++.++|...+...|+|+|+.+ +.|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~-~~~----------------------~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g 136 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDP-YGK----------------------WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136 (275)
T ss_pred EEECCCcccchhhHHHHhhh-ccC----------------------CCHHHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence 99999999999999999962 210 123456777788888888888999999987 578
Q ss_pred CCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCcccccceEEEecC
Q 000711 1254 DILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDG 1327 (1338)
Q Consensus 1254 ~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i~~~d~~l~l~~g 1327 (1338)
.+||+|||||+|||||++++|+||||||||++||.++++.+++.+++ .++|+|+|+||++++..+|++++|.+|
T Consensus 137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G 212 (275)
T cd03289 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEEN 212 (275)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCC
Confidence 89999999999999999999999999999999999999999887764 489999999999998899999999665
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=357.06 Aligned_cols=197 Identities=27% Similarity=0.375 Sum_probs=172.2
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC------ccccccEEE
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~ 517 (1338)
+|+|+||++.|. ++.+++|+||+|++||+++++|||||||||++|+|.++++|++|+|.++|.+ .++|++|||
T Consensus 1 MI~~~nvsk~y~-~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 1 MIEFENVSKRYG-NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred CceeeeeehhcC-CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 479999999995 6789999999999999999999999999999999999999999999999976 357899999
Q ss_pred EecCCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCc--hHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000711 518 VPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE--YLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1338)
Q Consensus 518 v~Q~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1338)
|-|..-||+ .||.|||.+-.....-.+..-++++.+.++.+||+ ++.+|+| .+|||||||||.+||||.
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP--------~eLSGGQQQRVGv~RALA 151 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP--------HELSGGQQQRVGVARALA 151 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc--------hhcCcchhhHHHHHHHHh
Confidence 999987765 69999998732211111122356788999999996 4899999 689999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhh-HhhcceEEEccC
Q 000711 595 HKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPAL-VAFHDVVLSLDG 649 (1338)
Q Consensus 595 ~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~-~~~~d~i~~l~~ 649 (1338)
.+|+++++|||++||||.++..+++.+++ .|+|+|+||||++. ++.+|+|.+|++
T Consensus 152 adP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~ 211 (309)
T COG1125 152 ADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDA 211 (309)
T ss_pred cCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecC
Confidence 99999999999999999999999887653 59999999999986 578999999986
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-41 Score=359.95 Aligned_cols=198 Identities=28% Similarity=0.400 Sum_probs=172.5
Q ss_pred CcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC-ccc--cccEEEEe
Q 000711 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDL--NKEIFYVP 519 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~-~~~--~~~i~~v~ 519 (1338)
..|+++|+++.|.++ ++|+|+||++++|++++|+||||||||||+|+|+|+.+|.+|+|.+.|.+ ... +.+|||||
T Consensus 3 ~~i~v~nl~v~y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVP 81 (254)
T COG1121 3 PMIEVENLTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVP 81 (254)
T ss_pred cEEEEeeeEEEECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcC
Confidence 368999999999655 79999999999999999999999999999999999999999999998864 111 35799999
Q ss_pred cCC---CCCCCCHHHHhcCCCCCCcc----cCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHH
Q 000711 520 QRP---YTAVGTLRDQLIYPLTSDQE----VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1338)
Q Consensus 520 Q~~---~l~~~tl~eni~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARa 592 (1338)
|.. |-|+.||+|-+..+...... ....+.+++.++|+.+|+.++.++.. .+|||||+||+-||||
T Consensus 82 Q~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i--------~~LSGGQ~QRV~lARA 153 (254)
T COG1121 82 QKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQI--------GELSGGQKQRVLLARA 153 (254)
T ss_pred cccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcc--------cccCcHHHHHHHHHHH
Confidence 965 56888999999887433211 12234578999999999999999864 6899999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 593 l~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
|+++|++++|||||+|+|+.++..+++.+++ .|+||++||||++.+. ++|+|+.|.+
T Consensus 154 L~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~ 214 (254)
T COG1121 154 LAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNR 214 (254)
T ss_pred hccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcC
Confidence 9999999999999999999999999998754 4999999999999874 7999999986
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=345.27 Aligned_cols=197 Identities=24% Similarity=0.305 Sum_probs=166.0
Q ss_pred ceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCc---cccCCcccEE
Q 000711 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHID---EEAGSGCGIF 1175 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~---~~~~lr~~i~ 1175 (1338)
-|+++||+.+|. ...||+|+|++|++||.|.|+||||||||||+++|.+|-+|++|+|.+||.++. ++..+|+++|
T Consensus 2 mi~i~~l~K~fg-~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG 80 (240)
T COG1126 2 MIEIKNLSKSFG-DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG 80 (240)
T ss_pred eEEEEeeeEEeC-CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC
Confidence 489999999994 567999999999999999999999999999999999999999999999998775 3466788999
Q ss_pred EEcCCCCCCC-CCHHHHhcCCC------chHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcc
Q 000711 1176 YVPQRPYTCL-GTLRDQIIYPL------SREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDA 1248 (1338)
Q Consensus 1176 ~VpQdP~LF~-GTIReNL~~p~------~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt 1248 (1338)
+|+|...||+ -|+-||+.++- +..++ .+...+.|+.|||.+..+.
T Consensus 81 mVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA---------------------~~~A~~lL~~VGL~~ka~~------- 132 (240)
T COG1126 81 MVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEA---------------------REKALELLEKVGLADKADA------- 132 (240)
T ss_pred eecccccccccchHHHHHHhhhHHHcCCCHHHH---------------------HHHHHHHHHHcCchhhhhh-------
Confidence 9999999996 59999997631 12222 2233467888888665544
Q ss_pred cCcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHH---hcCCeEEEeccCCCCc-ccccceEEE
Q 000711 1249 NLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAK---DMGITFVTSSQRPALI-PFHSLELRL 1324 (1338)
Q Consensus 1249 ~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~---~~~~TvI~IAHRl~~i-~~~d~~l~l 1324 (1338)
+..+||||||||+||||||.-+|+++++||||||||+|.-..+.++++ +.|.|+|+|+|-.... +.+|+++.+
T Consensus 133 ---yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFm 209 (240)
T COG1126 133 ---YPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFM 209 (240)
T ss_pred ---CccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEe
Confidence 346799999999999999999999999999999999998776655543 4699999999999754 568999999
Q ss_pred ecC
Q 000711 1325 IDG 1327 (1338)
Q Consensus 1325 ~~g 1327 (1338)
++|
T Consensus 210 d~G 212 (240)
T COG1126 210 DQG 212 (240)
T ss_pred eCC
Confidence 776
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-41 Score=362.84 Aligned_cols=198 Identities=28% Similarity=0.379 Sum_probs=173.8
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC------ccccccEEE
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~ 517 (1338)
.++++|+++.|+ ++++++|+||++++||+++|+||||||||||||+|+|+.+|.+|+|.++|.+ +++.++++|
T Consensus 2 ~L~~~~ls~~y~-~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 2 MLEVENLSFGYG-GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eeEEEEEEEEEC-CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 478999999996 7899999999999999999999999999999999999999999999999976 345678999
Q ss_pred EecCCCCC-CCCHHHHhcCCCCCCcc----cCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHH
Q 000711 518 VPQRPYTA-VGTLRDQLIYPLTSDQE----VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1338)
Q Consensus 518 v~Q~~~l~-~~tl~eni~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARa 592 (1338)
|||.+..+ .-||+|-+.+|...... ....+.+.+.++++.+++.++.++.- .+||||||||+.||||
T Consensus 81 vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~--------~~LSGGerQrv~iArA 152 (258)
T COG1120 81 VPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV--------DELSGGERQRVLIARA 152 (258)
T ss_pred eccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc--------cccChhHHHHHHHHHH
Confidence 99998665 45999999988643211 11223446888999999999999864 6899999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 593 l~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
|+++|++++||||||+||...+.++++.+++ .|+|+|+|.||+++. ++||+++.|+++
T Consensus 153 LaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G 215 (258)
T COG1120 153 LAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDG 215 (258)
T ss_pred HhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999998764 489999999999875 699999999874
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=364.12 Aligned_cols=203 Identities=23% Similarity=0.286 Sum_probs=170.7
Q ss_pred eEEeeeEEeCCC----ccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc-----cCC
Q 000711 1100 ISFSKLDIITPS----QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-----AGS 1170 (1338)
Q Consensus 1100 I~f~nV~f~yp~----~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~-----~~l 1170 (1338)
|+|++|+..|+. ..++|+|+||+|++||..||+|+||||||||++++-+|-.|++|+|.+||.|+..+ ..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 899999998876 25699999999999999999999999999999999999999999999999999887 345
Q ss_pred cccEEEEcCCCCCCC-CCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCccc
Q 000711 1171 GCGIFYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDAN 1249 (1338)
Q Consensus 1171 r~~i~~VpQdP~LF~-GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~ 1249 (1338)
|++|++|+|++-|++ -|+.+|+.||... ++. ..+.....+.++|+-|||.+..++
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLei----------ag~------~k~ei~~RV~elLelVgL~dk~~~-------- 137 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLEL----------AGV------PKAEIKQRVAELLELVGLSDKADR-------- 137 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhh----------cCC------CHHHHHHHHHHHHHHcCChhhhcc--------
Confidence 778999999999997 7999999998631 110 000113446677788888654433
Q ss_pred CcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHH----hcCCeEEEeccCCCCc-ccccceEEE
Q 000711 1250 LNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAK----DMGITFVTSSQRPALI-PFHSLELRL 1324 (1338)
Q Consensus 1250 ~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~----~~~~TvI~IAHRl~~i-~~~d~~l~l 1324 (1338)
...+||||||||++|||||..+|+||+.||||||||++|-+.|.++++ +.|.|+++|+|-++.+ ++||++.+|
T Consensus 138 --yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm 215 (339)
T COG1135 138 --YPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVL 215 (339)
T ss_pred --CchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEe
Confidence 346899999999999999999999999999999999999887766553 4699999999999865 679999999
Q ss_pred ecCC
Q 000711 1325 IDGE 1328 (1338)
Q Consensus 1325 ~~g~ 1328 (1338)
+.|+
T Consensus 216 ~~G~ 219 (339)
T COG1135 216 DQGR 219 (339)
T ss_pred eCCE
Confidence 7663
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=344.93 Aligned_cols=199 Identities=23% Similarity=0.352 Sum_probs=173.9
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC---------cccccc
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SDLNKE 514 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~---------~~~~~~ 514 (1338)
.|+++||+..||+++.+|+|+||+|++||+++|+||||||||||||+|.|+++|++|+|.++|.+ .+++++
T Consensus 3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred eEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHh
Confidence 58999999999999999999999999999999999999999999999999999999999999965 235788
Q ss_pred EEEEecCCCCCC-CCHHHHhcCCCCCCcc--------cCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHH
Q 000711 515 IFYVPQRPYTAV-GTLRDQLIYPLTSDQE--------VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQ 585 (1338)
Q Consensus 515 i~~v~Q~~~l~~-~tl~eni~~~~~~~~~--------~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQ 585 (1338)
|||++|.+.|.+ .|+.+|++.|...... ....+.....++|+.+|+.+..-... ++|||||||
T Consensus 83 iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra--------~~LSGGQQQ 154 (258)
T COG3638 83 IGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA--------STLSGGQQQ 154 (258)
T ss_pred ceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh--------ccCCcchhH
Confidence 999999998765 5999999877543211 11233456778899999988765533 689999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHh-hcceEEEccCC
Q 000711 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 586 RlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
||+|||||+++|++++.|||+++|||.+.+.+++.+++ .|+|+|+.-|+.++.+ +||||+-|+++
T Consensus 155 RVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G 224 (258)
T COG3638 155 RVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAG 224 (258)
T ss_pred HHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCC
Confidence 99999999999999999999999999999999998864 4999999999999875 89999999863
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-41 Score=340.83 Aligned_cols=205 Identities=22% Similarity=0.265 Sum_probs=168.2
Q ss_pred CceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCC-----ceEEcCCCCCccc----c
Q 000711 1098 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVS-----GSLTKPSQHIDEE----A 1168 (1338)
Q Consensus 1098 g~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~s-----G~I~idg~dI~~~----~ 1168 (1338)
..++++|+++||. ...+|+|||++|++++.+|++|||||||||+++.|-|+.|..+ |+|.++|.||.+. .
T Consensus 6 ~~~~~~~l~~yYg-~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 6 PAIEVRDLNLYYG-DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred ceeEecceeEEEC-chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 4689999999995 6779999999999999999999999999999999999999876 9999999999764 4
Q ss_pred CCcccEEEEcCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcc
Q 000711 1169 GSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDA 1248 (1338)
Q Consensus 1169 ~lr~~i~~VpQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt 1248 (1338)
.+|+++|+|.|.|.-|+.||+||+.|+.. .+|..+ +..|+.+...|+++.||+.+.. -|+.
T Consensus 85 ~lRr~vGMVFQkPnPFp~SIydNVayG~r----------~~g~~~------~~ldeiVe~sLk~AaLWdEVKD---rL~~ 145 (253)
T COG1117 85 ELRRRVGMVFQKPNPFPMSIYDNVAYGLR----------LHGIKD------KELDEIVESSLKKAALWDEVKD---RLHK 145 (253)
T ss_pred HHHHHheeeccCCCCCCchHHHHHHHhHH----------hhccch------HHHHHHHHHHHHHhHhHHHhHH---HhhC
Confidence 67889999999999999999999998632 222111 2346667777888888876643 1222
Q ss_pred cCcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCC-CcccccceEEEe
Q 000711 1249 NLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPA-LIPFHSLELRLI 1325 (1338)
Q Consensus 1249 ~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~-~i~~~d~~l~l~ 1325 (1338)
.+..|||||||||||||||.-+|+||+|||||||||+-+-..|.+++.+ .+-|||+|+|.+. ..+..|+.-.+.
T Consensus 146 ---sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~ 222 (253)
T COG1117 146 ---SALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFY 222 (253)
T ss_pred ---CccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhc
Confidence 2346999999999999999999999999999999999987777776654 5889999999884 555555555553
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=371.06 Aligned_cols=197 Identities=26% Similarity=0.382 Sum_probs=174.4
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC----ccccccEEEEe
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVP 519 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~----~~~~~~i~~v~ 519 (1338)
.|+++||++.|.+.. +++|+||+|++||+++|+||||||||||||+|+|+.+|++|+|.++|.+ ....++|++||
T Consensus 3 ~i~l~~v~K~yg~~~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVF 81 (338)
T COG3839 3 ELELKNVRKSFGSFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVF 81 (338)
T ss_pred EEEEeeeEEEcCCce-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEe
Confidence 589999999996544 9999999999999999999999999999999999999999999999975 12357899999
Q ss_pred cCCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCC
Q 000711 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1338)
Q Consensus 520 Q~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ 598 (1338)
|++-|++ .||+|||.||.......+...++++.++++.+++++++++.| .+||||||||+|||||++++|+
T Consensus 82 Q~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P--------~~LSGGQrQRVAlaRAlVr~P~ 153 (338)
T COG3839 82 QNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP--------LQLSGGQRQRVALARALVRKPK 153 (338)
T ss_pred CCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc--------ccCChhhHHHHHHHHHHhcCCC
Confidence 9998765 699999999987654333445788999999999999999999 7999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhH-hhcceEEEccC
Q 000711 599 FAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1338)
Q Consensus 599 illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~-~~~d~i~~l~~ 649 (1338)
+++||||+|+||.+.+..+...+++ .|.|+|+||||...+ ..+|+|++|.+
T Consensus 154 v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~ 209 (338)
T COG3839 154 VFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMND 209 (338)
T ss_pred EEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeC
Confidence 9999999999999988877666543 589999999997654 68999999984
|
|
| >PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=357.40 Aligned_cols=276 Identities=28% Similarity=0.476 Sum_probs=260.9
Q ss_pred ChHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHH
Q 000711 84 GLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHST 163 (1338)
Q Consensus 84 ~~~~l~~l~~~~~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (1338)
-++++++|++...|+.++++..++++++++.++++.++++++.|+++||++++++|.+.|++.++.+++++++.+++++.
T Consensus 6 flr~f~~L~~~~~~~~~~~~~~ll~~ll~l~l~~~~lsv~~~~~~g~~~~aL~~~d~~~f~~~l~~~~~l~~~~~~l~~~ 85 (281)
T PF06472_consen 6 FLRRFWRLARIYWPSERWKAWLLLLVLLLLLLARVYLSVRINFWNGDFYNALQQKDLQAFWRLLLLFLLLAIASALLNSI 85 (281)
T ss_pred HHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778889988889888888888888899999999999999999999999999999999999999999999888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000711 164 SKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLC 243 (1338)
Q Consensus 164 ~~~l~~~l~~~~R~~lt~~l~~~~~~~~~~~~~~~~d~~~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~ 243 (1338)
.+|+++.++++||+|||++++++|+++..||+++..++++|||||||++||+.|++.+++++.+++.++++.+.|++.|+
T Consensus 86 ~~yl~~~L~l~wR~~Lt~~~~~~yl~~~~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~~L~ 165 (281)
T PF06472_consen 86 LKYLRQRLALRWREWLTRHLHDRYLSNRTYYRLNNLDGRIDNPDQRITEDIRKFTESSLSLFLGLLKPILDLISFSVILW 165 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhHhhhccccccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999998
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHH
Q 000711 244 SYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRH 323 (1338)
Q Consensus 244 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~ 323 (1338)
...++...+++++|++++++++++++|++.+++.++|+.||+||+.|.++++|+|+||+|+||+.|+++++++|+++.++
T Consensus 166 ~~~g~~~~~~~~~y~~~~t~~~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f~~l~~~ 245 (281)
T PF06472_consen 166 SISGWLGPWAALIYAILGTLITHWIGPPLGRLNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDRRFDALIDN 245 (281)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 87677666677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 000711 324 MRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFF 359 (1338)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (1338)
+++.++.+.+.++++.++.++++..++++++.||+|
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~p~~F 281 (281)
T PF06472_consen 246 WRRLIRRRLRLGFFTNFYVKYLSSILPYLVVAPPYF 281 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 999999999999999998789999999999988875
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=343.30 Aligned_cols=197 Identities=34% Similarity=0.467 Sum_probs=171.5
Q ss_pred cEEEEeEEEEcCCCC---eeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC-------ccccc
Q 000711 444 YIEFSGVKVVTPTGN---VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNK 513 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~---~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~-------~~~~~ 513 (1338)
.++++|+++.|+.++ ++++|+||+|.+||+++|+|+||||||||.|+|+|+.+|++|+|.++|.. ....+
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 589999999998665 69999999999999999999999999999999999999999999999954 12467
Q ss_pred cEEEEecCCCC---CCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCc-hHHhcCCCCccccCCCCCChhHHHHHHH
Q 000711 514 EIFYVPQRPYT---AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1338)
Q Consensus 514 ~i~~v~Q~~~l---~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~g~~LSgGqkQRlal 589 (1338)
.+-+|||+|+- |..|+++-|.-|...... .....++.++++.+||. .+.+++| .+|||||+||+||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~--~~~~~~i~~~L~~VgL~~~~l~R~P--------~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGL--SKSQQRIAELLDQVGLPPSFLDRRP--------HELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCc--cHHHHHHHHHHHHcCCCHHHHhcCc--------hhcChhHHHHHHH
Confidence 89999999974 456999988776543211 12345689999999996 5788888 6899999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHh-hcceEEEccCC
Q 000711 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 590 ARal~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
||||..+|++||||||||+||......+++.+.+ .+.|+|+|||+++.+. .||||.+|+++
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G 218 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNG 218 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCC
Confidence 9999999999999999999999999999998753 5889999999999986 69999999974
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=372.00 Aligned_cols=199 Identities=25% Similarity=0.382 Sum_probs=175.1
Q ss_pred CcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC----ccccccEEEE
Q 000711 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYV 518 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~----~~~~~~i~~v 518 (1338)
..++++||++.|. +..+++|+||+|++||+++++||||||||||||+|+|+..|++|+|.++|.+ ..-++.|++|
T Consensus 4 ~~l~i~~v~k~yg-~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~V 82 (352)
T COG3842 4 PALEIRNVSKSFG-DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMV 82 (352)
T ss_pred ceEEEEeeeeecC-CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhccccee
Confidence 4689999999996 7899999999999999999999999999999999999999999999999976 2235789999
Q ss_pred ecCCCCCC-CCHHHHhcCCCCCCcccC-CCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccC
Q 000711 519 PQRPYTAV-GTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1338)
Q Consensus 519 ~Q~~~l~~-~tl~eni~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~ 596 (1338)
+|+.-||+ .||+|||.||........ ...++++.++++.++|+++.++.| .+||||||||+||||||..+
T Consensus 83 FQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p--------~qLSGGQqQRVALARAL~~~ 154 (352)
T COG3842 83 FQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP--------HQLSGGQQQRVALARALVPE 154 (352)
T ss_pred ecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh--------hhhChHHHHHHHHHHHhhcC
Confidence 99998875 699999999987322111 123458899999999999999998 69999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHH----ccCCeEEEEecChhh-HhhcceEEEccCC
Q 000711 597 PKFAILDECTSAVTTDMEERFCAKVR----AMGTSCITISHRPAL-VAFHDVVLSLDGE 650 (1338)
Q Consensus 597 p~illLDEpts~LD~~~~~~i~~~l~----~~~~t~i~itH~~~~-~~~~d~i~~l~~~ 650 (1338)
|++|+||||.||||.+.+.++...++ +.|+|.|+||||.+. +..+|+|.+|+++
T Consensus 155 P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G 213 (352)
T COG3842 155 PKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDG 213 (352)
T ss_pred cchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCC
Confidence 99999999999999999888777664 459999999999765 5789999999874
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=336.94 Aligned_cols=201 Identities=22% Similarity=0.246 Sum_probs=170.0
Q ss_pred CcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCc-----cEEEeCCCC--------c
Q 000711 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS-----GHIAKPGVG--------S 509 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~-----G~i~~~~~~--------~ 509 (1338)
..++++|++++|. ++.+|+|+|++|++++++|++||||||||||||++.++.+..+ |+|.++|.+ .
T Consensus 6 ~~~~~~~l~~yYg-~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 6 PAIEVRDLNLYYG-DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred ceeEecceeEEEC-chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 4689999999995 6789999999999999999999999999999999999988765 999999976 2
Q ss_pred cccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHh-cCCCCccccCCCCCChhHHHHHH
Q 000711 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLD-RYPPEKEINWGDELSLGEQQRLG 588 (1338)
Q Consensus 510 ~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~~~~~g~~LSgGqkQRla 588 (1338)
++|++||+|+|+|.-|+.||+||+.||.......+..-++.+++.|+.+.|++-++ ++. ..+..||||||||++
T Consensus 85 ~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~-----~sa~~LSGGQQQRLc 159 (253)
T COG1117 85 ELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLH-----KSALGLSGGQQQRLC 159 (253)
T ss_pred HHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhh-----CCccCCChhHHHHHH
Confidence 47899999999999999999999999865433322334566788899999876543 321 124679999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhH-hhcceEEEccC
Q 000711 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 649 (1338)
Q Consensus 589 lARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~-~~~d~i~~l~~ 649 (1338)
||||+.-+|++|+||||||||||.+..+|-+.+.+ .+-|+|+|||.+.-. +-+|+...+-.
T Consensus 160 IARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~ 223 (253)
T COG1117 160 IARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYL 223 (253)
T ss_pred HHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcc
Confidence 99999999999999999999999998888887765 478999999999865 46788888764
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=328.10 Aligned_cols=202 Identities=24% Similarity=0.309 Sum_probs=172.1
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc-----cCCcccE
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-----AGSGCGI 1174 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~-----~~lr~~i 1174 (1338)
|+|+||+..||+++++|+|+||+|++||.+-|+|||||||||++++|++.-.|++|+|.++|.|+..+ ..+|++|
T Consensus 2 I~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~I 81 (223)
T COG2884 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQI 81 (223)
T ss_pred eeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhee
Confidence 79999999999998899999999999999999999999999999999999999999999999999887 3678899
Q ss_pred EEEcCCCCCC-CCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCccc
Q 000711 1175 FYVPQRPYTC-LGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 1253 (1338)
Q Consensus 1175 ~~VpQdP~LF-~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g 1253 (1338)
++|.||--|. +-|+.||+++|..-. | ..++.....+.++|+.|||.+....+|
T Consensus 82 GvVFQD~rLL~~~tvyeNVA~pL~v~----------G------~~~~~i~~rV~~~L~~VgL~~k~~~lP---------- 135 (223)
T COG2884 82 GVVFQDFRLLPDRTVYENVALPLRVI----------G------KPPREIRRRVSEVLDLVGLKHKARALP---------- 135 (223)
T ss_pred eeEeeeccccccchHhhhhhhhhhcc----------C------CCHHHHHHHHHHHHHHhccchhhhcCc----------
Confidence 9999998866 569999999885310 0 011123455778889999987766664
Q ss_pred CCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCCCccc-ccceEEEecC
Q 000711 1254 DILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALIPF-HSLELRLIDG 1327 (1338)
Q Consensus 1254 ~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~~i~~-~d~~l~l~~g 1327 (1338)
.+||||||||+|||||++.+|++||-||||-+||+++-..|.++.++ .|.||++.+|..+++.- --+++.|++|
T Consensus 136 ~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~G 213 (223)
T COG2884 136 SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDG 213 (223)
T ss_pred cccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCC
Confidence 57999999999999999999999999999999999998887776644 69999999999987754 3466677554
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=378.15 Aligned_cols=211 Identities=20% Similarity=0.224 Sum_probs=171.4
Q ss_pred CCCCCCCCCCceEEeeeEEeCCC-ccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCC-----CCCceEEcCCC
Q 000711 1089 HKWNSTDYQDSISFSKLDIITPS-QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP-----VVSGSLTKPSQ 1162 (1338)
Q Consensus 1089 ~~wp~~~~~g~I~f~nV~f~yp~-~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~-----~~sG~I~idg~ 1162 (1338)
..||. .+.|+|+||++.|++ .+++|+|+||+|++||++|||||||||||||+++|+|+++ |.+|+|.+||+
T Consensus 73 ~~~~~---~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~ 149 (329)
T PRK14257 73 EDFNH---ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGT 149 (329)
T ss_pred CCCCc---CceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCE
Confidence 35876 578999999999874 5679999999999999999999999999999999999997 46999999999
Q ss_pred CCccc----cCCcccEEEEcCCCCCCCCCHHHHhcCCCc----hHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCC
Q 000711 1163 HIDEE----AGSGCGIFYVPQRPYTCLGTLRDQIIYPLS----REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVR 1234 (1338)
Q Consensus 1163 dI~~~----~~lr~~i~~VpQdP~LF~GTIReNL~~p~~----~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~ 1234 (1338)
||... ..+|.+++||||+|.+|++|+++||.++.. .+++.+ +....++++.++
T Consensus 150 ~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~-------------------~~~~~~~l~~~~ 210 (329)
T PRK14257 150 NTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKIL-------------------EKIVEKSLKSAA 210 (329)
T ss_pred EccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHH-------------------HHHHHHHHHHcC
Confidence 99732 245668999999999999999999986311 011110 112344555565
Q ss_pred chhhhhhhcccCcccC-cccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccC
Q 000711 1235 LSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQR 1311 (1338)
Q Consensus 1235 L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHR 1311 (1338)
|+. ++++.+ +.+.+||||||||+|||||++++|+|||||||||+||+++.+.+++.++. .++|+|+|||+
T Consensus 211 L~~-------~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~ 283 (329)
T PRK14257 211 LWD-------EVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHS 283 (329)
T ss_pred Ccc-------hhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 532 233333 35788999999999999999999999999999999999999988887754 47999999999
Q ss_pred CCCcc-cccceEEEecCC
Q 000711 1312 PALIP-FHSLELRLIDGE 1328 (1338)
Q Consensus 1312 l~~i~-~~d~~l~l~~g~ 1328 (1338)
++++. ++|++++|.+|.
T Consensus 284 l~~i~~~~Driivl~~G~ 301 (329)
T PRK14257 284 MAQAQRISDETVFFYQGW 301 (329)
T ss_pred HHHHHHhCCEEEEEECCE
Confidence 99765 599999997663
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=356.81 Aligned_cols=191 Identities=21% Similarity=0.210 Sum_probs=147.6
Q ss_pred CceEEeeeEEeCCC-ccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccccCCcccEEE
Q 000711 1098 DSISFSKLDIITPS-QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176 (1338)
Q Consensus 1098 g~I~f~nV~f~yp~-~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~~lr~~i~~ 1176 (1338)
..++|.+|+|.|+. .++.++++++.++.-+++.+||++|+||||+++++.+=..|..|.+.+.+ |.+|++
T Consensus 361 p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~---------r~ri~~ 431 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP---------RLRIKY 431 (582)
T ss_pred CeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc---------cceecc
Confidence 46999999997754 45899999999999999999999999999999999998888899887544 467998
Q ss_pred EcCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCC
Q 000711 1177 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDIL 1256 (1338)
Q Consensus 1177 VpQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~L 1256 (1338)
-.|.-+=| +.-|.. ++.... ...|...++++...+..+||...+... .-..|
T Consensus 432 f~Qhhvd~---l~~~v~-------~vd~~~---------~~~pG~~~ee~r~hl~~~Gl~g~la~~---------si~~L 483 (582)
T KOG0062|consen 432 FAQHHVDF---LDKNVN-------AVDFME---------KSFPGKTEEEIRRHLGSFGLSGELALQ---------SIASL 483 (582)
T ss_pred hhHhhhhH---HHHHhH-------HHHHHH---------HhCCCCCHHHHHHHHHhcCCCchhhhc---------ccccc
Confidence 88865433 111210 000000 012333566666666666653222111 12469
Q ss_pred ChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHhcCCeEEEeccCCCCcccccceEEEe
Q 000711 1257 SLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLI 1325 (1338)
Q Consensus 1257 SgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~~~~TvI~IAHRl~~i~~~d~~l~l~ 1325 (1338)
|||||-|+++|-....+|.+|||||||..||.|+-.++-+.++..+--||+|+|..+.++-...++...
T Consensus 484 SGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~~c~E~Wvv 552 (582)
T KOG0062|consen 484 SGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISSLCKELWVV 552 (582)
T ss_pred CCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhhcCceeEEE
Confidence 999999999999999999999999999999999999999888888889999999999999888888874
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=335.25 Aligned_cols=195 Identities=28% Similarity=0.366 Sum_probs=170.4
Q ss_pred CcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC---------ccccc
Q 000711 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SDLNK 513 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~---------~~~~~ 513 (1338)
..|++++|++.+ +++.+++|+||+|++||+++|+||||||||||+|+|.|+++|++|+|.++|.+ .++++
T Consensus 7 ~~I~vr~v~~~f-G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 7 PLIEVRGVTKSF-GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred ceEEEeeeeeec-CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 469999999998 56899999999999999999999999999999999999999999999999976 13578
Q ss_pred cEEEEecCCCCCCC-CHHHHhcCCCCCCcccCCCCHHHH----HHHHHHcCCchH-HhcCCCCccccCCCCCChhHHHHH
Q 000711 514 EIFYVPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGM----VELLKNVDLEYL-LDRYPPEKEINWGDELSLGEQQRL 587 (1338)
Q Consensus 514 ~i~~v~Q~~~l~~~-tl~eni~~~~~~~~~~~~~~~~~~----~~~l~~~~l~~~-~~~~~~~~~~~~g~~LSgGqkQRl 587 (1338)
++|+++|.--||.. ||+||+.||..... ..+++.+ ..-|+.+||... .+.+| .+||||+++|+
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~~---~lp~~~i~~lv~~KL~~VGL~~~~~~~~P--------sELSGGM~KRv 154 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREHT---KLPESLIRELVLMKLELVGLRGAAADLYP--------SELSGGMRKRV 154 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhhc---cCCHHHHHHHHHHHHHhcCCChhhhhhCc--------hhhcchHHHHH
Confidence 89999999999975 99999999875432 2333343 345788999887 78888 78999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 588 alARal~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
|||||+..+|+++++|||||+|||.+...+-+++++ .|.|+|+|||+++.+. .||+++++.+
T Consensus 155 aLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~ 221 (263)
T COG1127 155 ALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLAD 221 (263)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeC
Confidence 999999999999999999999999998777666543 5999999999998764 7899999986
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=350.87 Aligned_cols=199 Identities=30% Similarity=0.439 Sum_probs=178.1
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC-------ccccccEE
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEIF 516 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~-------~~~~~~i~ 516 (1338)
.++++|++|.|+++.++++|+||+|++||.++|+||||||||||+++++|+++|++|+|.++|.+ ..+++++|
T Consensus 3 ~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG 82 (235)
T COG1122 3 MIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVG 82 (235)
T ss_pred eEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceE
Confidence 58899999999877899999999999999999999999999999999999999999999999964 24678999
Q ss_pred EEecCC--CCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000711 517 YVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1338)
Q Consensus 517 ~v~Q~~--~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1338)
||+|+| .+|..||.|.+.|+........+.-++++.++++.+++.++.++.| .+||||||||+|||.+|.
T Consensus 83 ~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p--------~~LSGGqkqRvaIA~vLa 154 (235)
T COG1122 83 LVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP--------FNLSGGQKQRVAIAGVLA 154 (235)
T ss_pred EEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc--------cccCCcceeeHHhhHHHH
Confidence 999999 6888999999999876543322224567889999999999988877 689999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHc---c-CCeEEEEecChhhHh-hcceEEEccCC
Q 000711 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 595 ~~p~illLDEpts~LD~~~~~~i~~~l~~---~-~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
.+|+++|||||||+||+...+.+.+.+++ . |+|+|++||+++.+. +||++++|+++
T Consensus 155 ~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G 215 (235)
T COG1122 155 MGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDG 215 (235)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECC
Confidence 99999999999999999999999998765 2 689999999999876 59999999874
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=317.94 Aligned_cols=195 Identities=25% Similarity=0.343 Sum_probs=170.9
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC----ccccccEEEEec
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 520 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~----~~~~~~i~~v~Q 520 (1338)
+.+++|.+.|.. .--.++++|++||+++|+||||||||||+++|+|+..|.+|+|.++|++ ....+-+++++|
T Consensus 2 l~L~~V~~~y~~---~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQ 78 (231)
T COG3840 2 LALDDVRFSYGH---LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQ 78 (231)
T ss_pred ccccceEEeeCc---ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhh
Confidence 567889998843 2236889999999999999999999999999999999999999999987 234567999999
Q ss_pred CCCCCCC-CHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCE
Q 000711 521 RPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1338)
Q Consensus 521 ~~~l~~~-tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~i 599 (1338)
+..+|.- ||.+||.+|....-.....+.+++..++..+|+..+.+++| .+||||||||+||||+|+++-+|
T Consensus 79 EnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP--------~~LSGGqRQRvALARclvR~~Pi 150 (231)
T COG3840 79 ENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP--------GELSGGQRQRVALARCLVREQPI 150 (231)
T ss_pred ccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc--------cccCchHHHHHHHHHHHhccCCe
Confidence 9999975 99999999876544444556788999999999999999999 69999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHH----HccCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 600 AILDECTSAVTTDMEERFCAKV----RAMGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 600 llLDEpts~LD~~~~~~i~~~l----~~~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
++||||+|+|||..+.++...+ .+.+.|+++|||+++.+ +.+|++++++++
T Consensus 151 lLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~G 206 (231)
T COG3840 151 LLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNG 206 (231)
T ss_pred EEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCC
Confidence 9999999999999988877654 45799999999999876 479999999873
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=342.70 Aligned_cols=204 Identities=25% Similarity=0.310 Sum_probs=165.3
Q ss_pred eEEeeeEEeCCCc---cccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc------CC
Q 000711 1100 ISFSKLDIITPSQ---KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA------GS 1170 (1338)
Q Consensus 1100 I~f~nV~f~yp~~---~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~------~l 1170 (1338)
++++||+..|... ..+|+|+||+|++||.|+|+||||||||||+++|.++-.|++|.|.++|.|+..++ .+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 5789999977543 47999999999999999999999999999999999999999999999999998762 44
Q ss_pred cccEEEEcCCCCCCC-CCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCccc
Q 000711 1171 GCGIFYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDAN 1249 (1338)
Q Consensus 1171 r~~i~~VpQdP~LF~-GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~ 1249 (1338)
|.+|+||+|+..|.+ -|++||+..|... .+.. .........++++.++|.+....
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~----------~~~~------~~~~~~~~~~l~~~lgl~~~~~~-------- 137 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLI----------AGKS------AGRRKRAAEELLEVLGLEDRLLK-------- 137 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHH----------cCCC------hhHHHHHHHHHHHhcCChhhhcc--------
Confidence 568999999999875 5999999755210 0000 00012234455666676533321
Q ss_pred CcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHH----hcCCeEEEeccCCCCcccccceEEEe
Q 000711 1250 LNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAK----DMGITFVTSSQRPALIPFHSLELRLI 1325 (1338)
Q Consensus 1250 ~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~----~~~~TvI~IAHRl~~i~~~d~~l~l~ 1325 (1338)
....+||||||||+||||||+.+|+|++.||||++||.++.+.+.++++ +.|+|+|+|+|......++|+++.+.
T Consensus 138 -~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~ 216 (226)
T COG1136 138 -KKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELK 216 (226)
T ss_pred -CCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEe
Confidence 1235799999999999999999999999999999999999988776653 35899999999999999999999999
Q ss_pred cCC
Q 000711 1326 DGE 1328 (1338)
Q Consensus 1326 ~g~ 1328 (1338)
||.
T Consensus 217 dG~ 219 (226)
T COG1136 217 DGK 219 (226)
T ss_pred CCe
Confidence 886
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=367.98 Aligned_cols=199 Identities=26% Similarity=0.337 Sum_probs=171.6
Q ss_pred cEEEEeEEEEcCC---CCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc---------cc
Q 000711 444 YIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DL 511 (1338)
Q Consensus 444 ~i~~~~v~~~~~~---~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~---------~~ 511 (1338)
+|+++||++.|++ ..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. ..
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 3789999999963 24799999999999999999999999999999999999999999999999651 13
Q ss_pred cccEEEEecCCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHH
Q 000711 512 NKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1338)
Q Consensus 512 ~~~i~~v~Q~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalA 590 (1338)
+++|+|+||++.++. .|++||+.++...........++++.++++.+++.+..++.| .+||||||||++||
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~--------~~LSgGqkQRV~IA 152 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP--------SNLSGGQKQRVAIA 152 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh--------hhCCHHHHHHHHHH
Confidence 568999999998875 699999998753211111122456788999999999888877 68999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHh-hcceEEEccCC
Q 000711 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 591 Ral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
|||+.+|++|+||||||+||+.+...+++.+++ .|+|+|+|||+++.+. .||++++|+++
T Consensus 153 RAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G 217 (343)
T TIGR02314 153 RALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNG 217 (343)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999988765 3899999999999884 69999999863
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=342.17 Aligned_cols=198 Identities=28% Similarity=0.419 Sum_probs=172.4
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCC---Cc-c---ccccEE
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV---GS-D---LNKEIF 516 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~---~~-~---~~~~i~ 516 (1338)
+|+++|+++.++ ..++++|+|++|+.||.+++.||||||||||||+|+|+..|++|+|.++|. |. . -.++||
T Consensus 2 ~i~i~~~~~~~~-~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VG 80 (345)
T COG1118 2 SIRINNVKKRFG-AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVG 80 (345)
T ss_pred ceeehhhhhhcc-cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhccee
Confidence 467888888775 467899999999999999999999999999999999999999999999997 51 1 236899
Q ss_pred EEecCCCCCC-CCHHHHhcCCCCCCcc--cCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHH
Q 000711 517 YVPQRPYTAV-GTLRDQLIYPLTSDQE--VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1338)
Q Consensus 517 ~v~Q~~~l~~-~tl~eni~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal 593 (1338)
||+|+.-+|. .||.|||.||...... .+...+.++.+.|+.|+|+.+.+++| .+||||||||+||||||
T Consensus 81 fvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP--------~QLSGGQrQRVALARAL 152 (345)
T COG1118 81 FVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP--------AQLSGGQRQRVALARAL 152 (345)
T ss_pred EEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc--------hhcChHHHHHHHHHHHh
Confidence 9999987765 7999999999853311 12234678899999999999999999 69999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 594 ~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
..+|++|+||||+++||.+..+.+.+.|++ .|.|+++||||.+.. +.+|+|++|+++
T Consensus 153 A~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G 214 (345)
T COG1118 153 AVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQG 214 (345)
T ss_pred hcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCC
Confidence 999999999999999999999888877754 499999999998865 689999999874
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=349.23 Aligned_cols=197 Identities=26% Similarity=0.370 Sum_probs=169.1
Q ss_pred EEEEeEEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc---------ccccc
Q 000711 445 IEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DLNKE 514 (1338)
Q Consensus 445 i~~~~v~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~---------~~~~~ 514 (1338)
++++|+++.|+++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 7899999999754 5799999999999999999999999999999999999999999999998641 13467
Q ss_pred EEEEecCCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHH
Q 000711 515 IFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1338)
Q Consensus 515 i~~v~Q~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal 593 (1338)
++|+||+|.++. .|++||+.++...........++++.++++.+++.+..++.+ .+||||||||++|||||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~laral 153 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP--------MQLSGGEQQRVAIARAI 153 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh--------hhCCHHHHHHHHHHHHH
Confidence 999999998876 599999987532111001113456788999999998888766 68999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 594 ~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
+++|+++||||||++||+.+.+.+.+.+++ .|+|+|+|||+++.+. .||++++|++
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~ 213 (216)
T TIGR00960 154 VHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSR 213 (216)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 999999999999999999999999988764 3899999999999876 6899999976
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-38 Score=353.51 Aligned_cols=199 Identities=22% Similarity=0.336 Sum_probs=177.2
Q ss_pred cEEEEeEEEEcCC-CCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC------ccccccEE
Q 000711 444 YIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 516 (1338)
Q Consensus 444 ~i~~~~v~~~~~~-~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~ 516 (1338)
.|+++|+++.|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++ .+|+|.++|.+ ..+++.++
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFG 80 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEE
Confidence 5899999999974 4679999999999999999999999999999999999998 79999999965 23567899
Q ss_pred EEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccc---cCCCCCChhHHHHHHHHHHH
Q 000711 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLF 593 (1338)
Q Consensus 517 ~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal 593 (1338)
|+||+|.+|++|+++|+.+.. ..+++++.++++.++++++++++|.+..+ +.|.+||||||||++||||+
T Consensus 81 ~v~q~~~lf~~tv~~nl~~~~-------~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRal 153 (275)
T cd03289 81 VIPQKVFIFSGTFRKNLDPYG-------KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSV 153 (275)
T ss_pred EECCCcccchhhHHHHhhhcc-------CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999996321 13467889999999999999998864332 46889999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhHhhcceEEEccCC
Q 000711 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 594 ~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~~~~d~i~~l~~~ 650 (1338)
+++|++++|||||++||+.+.+.+++.+++ .++|+|+||||++.+..||+|++|+++
T Consensus 154 l~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G 212 (275)
T cd03289 154 LSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEEN 212 (275)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCC
Confidence 999999999999999999999999998875 489999999999999999999999863
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=346.60 Aligned_cols=198 Identities=29% Similarity=0.434 Sum_probs=168.8
Q ss_pred EEEEeEEEEcCCC---CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc-c---------c
Q 000711 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-D---------L 511 (1338)
Q Consensus 445 i~~~~v~~~~~~~---~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~-~---------~ 511 (1338)
++++||++.|+++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. . .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 4689999999653 6899999999999999999999999999999999999999999999998641 1 2
Q ss_pred cccEEEEecCCCCCCC-CHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHH
Q 000711 512 NKEIFYVPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1338)
Q Consensus 512 ~~~i~~v~Q~~~l~~~-tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalA 590 (1338)
++.++|+||+|.++.. |++||+.++...........++++.++++.+++++..++.+ .+||||||||++||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la 152 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYP--------SELSGGQQQRVAIA 152 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcCh--------hhcCHHHHHHHHHH
Confidence 3579999999988875 99999987542211101112356788999999988877765 68999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHhhcceEEEccCC
Q 000711 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 591 Ral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~~~d~i~~l~~~ 650 (1338)
|||+.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+..||++++|+++
T Consensus 153 ~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G 216 (218)
T cd03255 153 RALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDG 216 (218)
T ss_pred HHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCC
Confidence 999999999999999999999999999888764 378999999999988899999999863
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-38 Score=366.39 Aligned_cols=198 Identities=25% Similarity=0.388 Sum_probs=171.8
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc----cccccEEEEe
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----DLNKEIFYVP 519 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~----~~~~~i~~v~ 519 (1338)
.++++|+++.|++++++|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+. ..++.|+|||
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 489999999996567899999999999999999999999999999999999999999999999641 1246799999
Q ss_pred cCCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCC
Q 000711 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1338)
Q Consensus 520 Q~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ 598 (1338)
|++.+|. .|++|||.|+............+++.++++.++++++.++.| .+||||||||++|||||+.+|+
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--------~~LSgGq~QRvalARAL~~~P~ 154 (356)
T PRK11650 83 QNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP--------RELSGGQRQRVAMGRAIVREPA 154 (356)
T ss_pred CCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh--------hhCCHHHHHHHHHHHHHhcCCC
Confidence 9999885 699999999754211111112356789999999999999987 6899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhH-hhcceEEEccC
Q 000711 599 FAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1338)
Q Consensus 599 illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~-~~~d~i~~l~~ 649 (1338)
++|||||||+||+.+++.+.+.+++ .|+|+|+|||+++.+ ..+|++++|++
T Consensus 155 llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~ 210 (356)
T PRK11650 155 VFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNG 210 (356)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 9999999999999999998887753 389999999999865 58999999986
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-38 Score=337.12 Aligned_cols=203 Identities=22% Similarity=0.311 Sum_probs=167.1
Q ss_pred ceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccccCCcccEEEEc
Q 000711 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 1178 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~~lr~~i~~Vp 1178 (1338)
.|+++|++++|.+. +||+||||+|++|+.++|+||||||||||+++++|+..|.+|+|.+.|.+++.... +.+|+|||
T Consensus 4 ~i~v~nl~v~y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~-~~~IgYVP 81 (254)
T COG1121 4 MIEVENLTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK-RLRIGYVP 81 (254)
T ss_pred EEEEeeeEEEECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc-CCeEEEcC
Confidence 69999999999766 69999999999999999999999999999999999999999999999998876643 34699999
Q ss_pred CCC---CCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCC
Q 000711 1179 QRP---YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 1255 (1338)
Q Consensus 1179 QdP---~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~ 1255 (1338)
|.. .-|+-|++|-+..+.... ........+...+.+.++|+.|++.++.++. -..
T Consensus 82 Q~~~~d~~fP~tV~d~V~~g~~~~------------~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~----------i~~ 139 (254)
T COG1121 82 QKSSVDRSFPITVKDVVLLGRYGK------------KGWFRRLNKKDKEKVDEALERVGMEDLRDRQ----------IGE 139 (254)
T ss_pred cccccCCCCCcCHHHHHHccCccc------------ccccccccHHHHHHHHHHHHHcCchhhhCCc----------ccc
Confidence 965 347789998876532100 0001111111235678889999997766552 246
Q ss_pred CChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCC-CcccccceEEEe
Q 000711 1256 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPA-LIPFHSLELRLI 1325 (1338)
Q Consensus 1256 LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~-~i~~~d~~l~l~ 1325 (1338)
|||||+||+.|||||+.+|++|+|||||+++|+.++..+++++++ .|+||++|+|.++ ..++.|+++.|.
T Consensus 140 LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln 213 (254)
T COG1121 140 LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN 213 (254)
T ss_pred cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc
Confidence 999999999999999999999999999999999999998887643 4999999999996 778899999993
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=340.56 Aligned_cols=191 Identities=30% Similarity=0.403 Sum_probs=166.9
Q ss_pred EEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC---ccccccEEEEecCC-
Q 000711 447 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---SDLNKEIFYVPQRP- 522 (1338)
Q Consensus 447 ~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~---~~~~~~i~~v~Q~~- 522 (1338)
++|+++.|++++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...+++++|+||+|
T Consensus 2 ~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~ 81 (205)
T cd03226 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVD 81 (205)
T ss_pred cccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChh
Confidence 67899998643689999999999999999999999999999999999999999999999865 22346799999998
Q ss_pred -CCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000711 523 -YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601 (1338)
Q Consensus 523 -~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ill 601 (1338)
+++..|++||+.++.... ....+++.++++.+++.++.++.| ..||||||||++|||||+.+|+++|
T Consensus 82 ~~~~~~tv~e~l~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~~~p~lll 149 (205)
T cd03226 82 YQLFTDSVREELLLGLKEL----DAGNEQAETVLKDLDLYALKERHP--------LSLSGGQKQRLAIAAALLSGKDLLI 149 (205)
T ss_pred hhhhhccHHHHHhhhhhhc----CccHHHHHHHHHHcCCchhcCCCc--------hhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 466789999998864321 122457889999999998887766 6899999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 602 LDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 602 LDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
|||||++||+.+.+.+.+.+++ .|+|+|++||+++.+. .+|++++|++
T Consensus 150 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 201 (205)
T cd03226 150 FDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLAN 201 (205)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999988864 4899999999999875 6999999986
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=343.86 Aligned_cols=200 Identities=27% Similarity=0.353 Sum_probs=169.8
Q ss_pred EEEEeEEEEcCCC---CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC-ccccccEEEEec
Q 000711 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQ 520 (1338)
Q Consensus 445 i~~~~v~~~~~~~---~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~-~~~~~~i~~v~Q 520 (1338)
++++|+++.|+++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+||
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 4689999999642 689999999999999999999999999999999999999999999999865 234568999999
Q ss_pred CCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCE
Q 000711 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1338)
Q Consensus 521 ~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~i 599 (1338)
+|.++. .|++||+.++............+++.++++.+++.+..++.+ .+||||||||++|||||+++|++
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrl~la~al~~~p~l 152 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP--------HQLSGGMRQRVALARALAVDPDV 152 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc--------ccCCHHHHHHHHHHHHHHcCCCE
Confidence 998876 699999987532111001112456788999999988887766 68999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhH-hhcceEEEccC-CCc
Q 000711 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG-EGE 652 (1338)
Q Consensus 600 llLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~-~~~d~i~~l~~-~g~ 652 (1338)
+||||||++||+.+.+.+++.+++ .|+|+|++||+++.+ ..||++++|++ +|.
T Consensus 153 llLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 153 LLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGR 211 (220)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCE
Confidence 999999999999999999998764 379999999999866 57999999985 454
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=325.66 Aligned_cols=166 Identities=54% Similarity=0.999 Sum_probs=154.0
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCccccccEEEEecCCCC
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYT 524 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q~~~l 524 (1338)
++++|+++.|++++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+++. ++++|++|++++
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----~~i~~~~q~~~~ 75 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----EDLLFLPQRPYL 75 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----ceEEEECCCCcc
Confidence 468999999976678999999999999999999999999999999999999999999999873 579999999999
Q ss_pred CCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEEEec
Q 000711 525 AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604 (1338)
Q Consensus 525 ~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~illLDE 604 (1338)
+++|++||+.++ . ..+||||||||++||||++++|++++|||
T Consensus 76 ~~~tv~~nl~~~------------------------------~--------~~~LS~G~~~rv~laral~~~p~~lllDE 117 (166)
T cd03223 76 PLGTLREQLIYP------------------------------W--------DDVLSGGEQQRLAFARLLLHKPKFVFLDE 117 (166)
T ss_pred ccccHHHHhhcc------------------------------C--------CCCCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 889999999763 1 25799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHccCCeEEEEecChhhHhhcceEEEccCCCce
Q 000711 605 CTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEW 653 (1338)
Q Consensus 605 pts~LD~~~~~~i~~~l~~~~~t~i~itH~~~~~~~~d~i~~l~~~g~~ 653 (1338)
||++||+.+.+.+.+.+++.++|+|++||+++....+|++++++++|+|
T Consensus 118 Pt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~~~~d~i~~l~~~~~~ 166 (166)
T cd03223 118 ATSALDEESEDRLYQLLKELGITVISVGHRPSLWKFHDRVLDLDGEGGW 166 (166)
T ss_pred CccccCHHHHHHHHHHHHHhCCEEEEEeCChhHHhhCCEEEEEcCCCCC
Confidence 9999999999999999988889999999999988899999999998865
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=304.87 Aligned_cols=199 Identities=30% Similarity=0.401 Sum_probs=172.0
Q ss_pred cEEEEeEEEEcCC---CCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC-----c----cc
Q 000711 444 YIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----S----DL 511 (1338)
Q Consensus 444 ~i~~~~v~~~~~~---~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~-----~----~~ 511 (1338)
.|+++++++.-++ .-.+|++++|.|++||.++||||||||||||+-+++|+-.|++|+|.+.|++ + .+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 5778888775543 3479999999999999999999999999999999999999999999999875 1 12
Q ss_pred -cccEEEEecCCC-CCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHH
Q 000711 512 -NKEIFYVPQRPY-TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1338)
Q Consensus 512 -~~~i~~v~Q~~~-l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlal 589 (1338)
.+++|||+|... +++.|-.||+..|..-..+...-..+...+.|+.+||.+-+..+| .+||||||||+||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP--------~qLSGGEQQRVAi 157 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP--------AQLSGGEQQRVAL 157 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCc--------cccCchHHHHHHH
Confidence 368999999976 477899999999876543322223445778999999999999998 7999999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHH----HccCCeEEEEecChhhHhhcceEEEccCC
Q 000711 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKV----RAMGTSCITISHRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 590 ARal~~~p~illLDEpts~LD~~~~~~i~~~l----~~~~~t~i~itH~~~~~~~~d~i~~l~~~ 650 (1338)
||||..+|++||-||||-+||.++.++|.+.+ ++.|.|.|+||||+.+...|||++.|..+
T Consensus 158 ARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G 222 (228)
T COG4181 158 ARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSG 222 (228)
T ss_pred HHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecc
Confidence 99999999999999999999999999888876 35699999999999999999999999763
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=361.65 Aligned_cols=199 Identities=26% Similarity=0.395 Sum_probs=172.8
Q ss_pred CcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC----ccccccEEEE
Q 000711 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYV 518 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~----~~~~~~i~~v 518 (1338)
..|+++||++.|+ +.++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ...+++++||
T Consensus 5 ~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 83 (351)
T PRK11432 5 NFVVLKNITKRFG-SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV 83 (351)
T ss_pred cEEEEEeEEEEEC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 4699999999995 4679999999999999999999999999999999999999999999999964 1124689999
Q ss_pred ecCCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCC
Q 000711 519 PQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1338)
Q Consensus 519 ~Q~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p 597 (1338)
||++.+|+ .|++||+.|+...........++++.++++.+++.++.++.| .+||||||||++|||||+.+|
T Consensus 84 fQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~--------~~LSgGq~QRVaLARaL~~~P 155 (351)
T PRK11432 84 FQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV--------DQISGGQQQRVALARALILKP 155 (351)
T ss_pred eCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh--------hhCCHHHHHHHHHHHHHHcCC
Confidence 99999886 599999999754211111122457889999999999988887 689999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 598 KFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 598 ~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
++++||||||+||+.+.+.+.+.+++ .|+|+|+|||+++.+ ..+|+|++|+++
T Consensus 156 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G 213 (351)
T PRK11432 156 KVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKG 213 (351)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999887753 489999999999876 679999999863
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=329.53 Aligned_cols=200 Identities=22% Similarity=0.244 Sum_probs=166.6
Q ss_pred ceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccccCCcccEEEEc
Q 000711 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 1178 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~~lr~~i~~Vp 1178 (1338)
.+++++|+..|++ ..||+|+||+|++||.|+|+||||||||||++++.||..|++|+|.++|..+... ...++||+
T Consensus 3 ~l~i~~v~~~f~~-~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p---~~~~~~vF 78 (248)
T COG1116 3 LLEIEGVSKSFGG-VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP---GPDIGYVF 78 (248)
T ss_pred eEEEEeeEEEeCc-eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC---CCCEEEEe
Confidence 5889999999976 7899999999999999999999999999999999999999999999999987433 24689999
Q ss_pred CCCCCCC-CCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCCC
Q 000711 1179 QRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 1257 (1338)
Q Consensus 1179 QdP~LF~-GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LS 1257 (1338)
|++.||+ -|+++|+.+|..... . ......+.+.++|+.|||..+-++ +..+||
T Consensus 79 Q~~~LlPW~Tv~~NV~l~l~~~~----------~------~~~e~~~~a~~~L~~VgL~~~~~~----------~P~qLS 132 (248)
T COG1116 79 QEDALLPWLTVLDNVALGLELRG----------K------SKAEARERAKELLELVGLAGFEDK----------YPHQLS 132 (248)
T ss_pred ccCcccchhhHHhhheehhhccc----------c------chHhHHHHHHHHHHHcCCcchhhc----------CccccC
Confidence 9999998 699999987643100 0 000012345677888998665444 346799
Q ss_pred hhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHH----HhcCCeEEEeccCC-CCcccccceEEEecCC
Q 000711 1258 LGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLA----KDMGITFVTSSQRP-ALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1258 gGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~----~~~~~TvI~IAHRl-~~i~~~d~~l~l~~g~ 1328 (1338)
||||||+|||||++.+|++|+||||-+|||+-|...+|+.+ ++.++||+.|+|.. +-+-..|++++|.++-
T Consensus 133 GGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P 208 (248)
T COG1116 133 GGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRP 208 (248)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCC
Confidence 99999999999999999999999999999999998887643 44689999999999 4788899999996543
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=341.36 Aligned_cols=197 Identities=30% Similarity=0.438 Sum_probs=167.2
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC----ccccccEEEEec
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 520 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~----~~~~~~i~~v~Q 520 (1338)
++++|+++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+||
T Consensus 1 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 79 (213)
T cd03259 1 LELKGLSKTYGS-VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQ 79 (213)
T ss_pred CeeeeeEEEeCC-eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcC
Confidence 468999999864 689999999999999999999999999999999999999999999999864 113457999999
Q ss_pred CCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCE
Q 000711 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1338)
Q Consensus 521 ~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~i 599 (1338)
+|.++. .|++||+.++............+++.++++.+++.+..++.+ .+||||||||++|||||+.+|++
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrl~la~al~~~p~~ 151 (213)
T cd03259 80 DYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP--------HELSGGQQQRVALARALAREPSL 151 (213)
T ss_pred chhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCh--------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 998775 699999987532111001112346788999999998887766 68999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 600 llLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
+||||||++||+.+.+.+++.+++ .|+|+|++||+++.+ ..||++++|+++
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G 207 (213)
T cd03259 152 LLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEG 207 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECC
Confidence 999999999999999999998764 389999999999876 579999999863
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=340.70 Aligned_cols=197 Identities=30% Similarity=0.438 Sum_probs=168.6
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc---------cccccE
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DLNKEI 515 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~---------~~~~~i 515 (1338)
++++|+++.|++++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.+
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRI 81 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhhe
Confidence 78999999996457899999999999999999999999999999999999999999999998641 134679
Q ss_pred EEEecCCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000711 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1338)
Q Consensus 516 ~~v~Q~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1338)
+|+||+|.++. .|++||+.++...........++++.++++.+++.+..++.+ .+||||||||++|||||+
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~la~al~ 153 (214)
T TIGR02673 82 GVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP--------EQLSGGEQQRVAIARAIV 153 (214)
T ss_pred EEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh--------hhCCHHHHHHHHHHHHHh
Confidence 99999998875 699999987532110001112456788999999988777765 689999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 595 ~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
.+|+++||||||++||+.+...+.+.+++ .|+|+|++||+++.+. .||++++|++
T Consensus 154 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~ 212 (214)
T TIGR02673 154 NSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDD 212 (214)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecC
Confidence 99999999999999999999999998865 4899999999999876 6899999976
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=340.25 Aligned_cols=197 Identities=25% Similarity=0.337 Sum_probs=168.1
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc---------cccccE
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DLNKEI 515 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~---------~~~~~i 515 (1338)
++++|+++.|++++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.+
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 46899999997556899999999999999999999999999999999999999999999998641 134579
Q ss_pred EEEecCCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000711 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1338)
Q Consensus 516 ~~v~Q~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1338)
+|+||+|.++. .|++||+.++...........++++.++++.+++++..++.+ .+||||||||++||||++
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~ 152 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP--------AELSGGEQQRVAIARAIV 152 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh--------hhcCHHHHHHHHHHHHHH
Confidence 99999998877 599999987532111001112356788999999988877765 689999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 595 ~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
++|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+. .||++++|++
T Consensus 153 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 211 (214)
T cd03292 153 NSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALER 211 (214)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 99999999999999999999999988764 4899999999999886 5899999976
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=351.43 Aligned_cols=199 Identities=24% Similarity=0.327 Sum_probs=171.4
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc------cccccEEE
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------DLNKEIFY 517 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~~~~~i~~ 517 (1338)
.++++||++.|+++.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.++|
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 83 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence 589999999997556899999999999999999999999999999999999999999999999641 23467999
Q ss_pred EecCC--CCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHcc
Q 000711 518 VPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1338)
Q Consensus 518 v~Q~~--~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~ 595 (1338)
+||+| .++..|++||+.++............+++.++++.+++.+..++.| .+||||||||++|||||+.
T Consensus 84 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~--------~~LSgG~~qrv~laraL~~ 155 (274)
T PRK13647 84 VFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP--------YHLSYGQKKRVAIAGVLAM 155 (274)
T ss_pred EecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh--------hhCCHHHHHHHHHHHHHHc
Confidence 99998 5778899999988632111001112356788999999998888877 6899999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 596 KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 596 ~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
+|+++||||||++||+.+...+.+.+++ .|+|+|++||+++.+ +.||++++|+++
T Consensus 156 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G 214 (274)
T PRK13647 156 DPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEG 214 (274)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999988764 389999999999987 579999999863
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=344.78 Aligned_cols=196 Identities=27% Similarity=0.365 Sum_probs=166.6
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc---------cccccE
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DLNKEI 515 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~---------~~~~~i 515 (1338)
++++|+++.|+ ++++++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. .+++.+
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 1 IELRGLTKSFG-GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred CeEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 46899999995 46799999999999999999999999999999999999999999999998541 235679
Q ss_pred EEEecCCCCCCC-CHHHHhcCCCCCCc-ccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHH
Q 000711 516 FYVPQRPYTAVG-TLRDQLIYPLTSDQ-EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1338)
Q Consensus 516 ~~v~Q~~~l~~~-tl~eni~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal 593 (1338)
+|+||++.++.. |++||+.++..... .......+++.++++.+++.+..++.+ .+||||||||++|||||
T Consensus 80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~ia~al 151 (235)
T cd03261 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYP--------AELSGGMKKRVALARAL 151 (235)
T ss_pred EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCCh--------hhCCHHHHHHHHHHHHH
Confidence 999999988875 99999987532110 000112345778899999988777765 68999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 594 ~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
+.+|+++||||||++||+.+++.+++.+++ .|+|+|+|||+++.+. .||++++|++
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~ 212 (235)
T cd03261 152 ALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYD 212 (235)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEEC
Confidence 999999999999999999999999988764 3899999999999775 6999999986
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=324.10 Aligned_cols=202 Identities=30% Similarity=0.399 Sum_probs=160.5
Q ss_pred ceEEeeeEEeCCCcc---ccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc---CCcc
Q 000711 1099 SISFSKLDIITPSQK---LLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA---GSGC 1172 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~~---~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~---~lr~ 1172 (1338)
.++.+|++++|+... ++|+||||+|.+||++||||+||||||||.++|.|+-+|++|+|.+||.++.... ..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 478999999998765 7999999999999999999999999999999999999999999999998776642 2345
Q ss_pred cEEEEcCCCCC--C-CCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhh-hhhhcccCcc
Q 000711 1173 GIFYVPQRPYT--C-LGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYL-LEREEVGWDA 1248 (1338)
Q Consensus 1173 ~i~~VpQdP~L--F-~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~-i~~~~~Gldt 1248 (1338)
.+-+|+|||+- - .-|+++-|.-|. ...+.++ ....+.++++.|+|..- ..+
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl----------~~~~~~~--------~~~~i~~~L~~VgL~~~~l~R------- 137 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPL----------RPHGLSK--------SQQRIAELLDQVGLPPSFLDR------- 137 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhh----------ccCCccH--------HHHHHHHHHHHcCCCHHHHhc-------
Confidence 79999999983 2 235555553222 1111110 12336778888887532 222
Q ss_pred cCcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHH----HhcCCeEEEeccCCCCcc-cccceEE
Q 000711 1249 NLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLA----KDMGITFVTSSQRPALIP-FHSLELR 1323 (1338)
Q Consensus 1249 ~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~----~~~~~TvI~IAHRl~~i~-~~d~~l~ 1323 (1338)
+..+||||||||+||||||.-+||+||||||||+||+-+++.|.+++ ++.+.|.|.|+|.++.+. ++|++.+
T Consensus 138 ---~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~V 214 (252)
T COG1124 138 ---RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAV 214 (252)
T ss_pred ---CchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheee
Confidence 34569999999999999999999999999999999999999877654 346889999999998664 5999999
Q ss_pred EecCC
Q 000711 1324 LIDGE 1328 (1338)
Q Consensus 1324 l~~g~ 1328 (1338)
+..|.
T Consensus 215 m~~G~ 219 (252)
T COG1124 215 MDNGQ 219 (252)
T ss_pred eeCCe
Confidence 97653
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=337.91 Aligned_cols=194 Identities=32% Similarity=0.449 Sum_probs=165.6
Q ss_pred EEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC-ccccccEEEEecCCCC-
Q 000711 447 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQRPYT- 524 (1338)
Q Consensus 447 ~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~-~~~~~~i~~v~Q~~~l- 524 (1338)
++||++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...+++++|+||+|.+
T Consensus 2 ~~~l~~~~~~-~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~ 80 (213)
T cd03235 2 VEDLTVSYGG-HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSID 80 (213)
T ss_pred cccceeEECC-EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccc
Confidence 6789998864 679999999999999999999999999999999999999999999999865 2345679999999876
Q ss_pred --CCCCHHHHhcCCCCCCc----ccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCC
Q 000711 525 --AVGTLRDQLIYPLTSDQ----EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1338)
Q Consensus 525 --~~~tl~eni~~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ 598 (1338)
+..|++||+.++..... .......+++.++++.++++++.++.+ .+||||||||++|||||+.+|+
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~la~al~~~p~ 152 (213)
T cd03235 81 RDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI--------GELSGGQQQRVLLARALVQDPD 152 (213)
T ss_pred cCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc--------ccCCHHHHHHHHHHHHHHcCCC
Confidence 45799999987643210 001112456788999999988877765 6899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 599 FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 599 illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+. .+|++++|++
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~ 207 (213)
T cd03235 153 LLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNR 207 (213)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcC
Confidence 9999999999999999999988764 4789999999999875 6899999975
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=339.40 Aligned_cols=197 Identities=25% Similarity=0.357 Sum_probs=167.0
Q ss_pred EEEEeEEEEcCCC---CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc-c--------cc
Q 000711 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-D--------LN 512 (1338)
Q Consensus 445 i~~~~v~~~~~~~---~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~-~--------~~ 512 (1338)
++++||++.|+++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. . ++
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 6899999999642 5799999999999999999999999999999999999999999999998641 1 12
Q ss_pred -ccEEEEecCCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHH
Q 000711 513 -KEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1338)
Q Consensus 513 -~~i~~v~Q~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalA 590 (1338)
+.++|+||++.++. .|++||+.++............+++.++++.+++++..++.+ ..||||||||++||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la 153 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRP--------SELSGGERQRVAIA 153 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh--------hhCCHHHHHHHHHH
Confidence 56999999998875 699999987421110000112346778999999988877765 68999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHhhcceEEEccC
Q 000711 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDG 649 (1338)
Q Consensus 591 Ral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~~~d~i~~l~~ 649 (1338)
||++.+|+++||||||++||+.++..+.+.+++ .++|+|++||+++.+..+|++++|++
T Consensus 154 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~ 216 (221)
T TIGR02211 154 RALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKD 216 (221)
T ss_pred HHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeC
Confidence 999999999999999999999999999988763 37999999999999888999999986
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=335.69 Aligned_cols=207 Identities=25% Similarity=0.291 Sum_probs=167.5
Q ss_pred ceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEEE
Q 000711 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFY 1176 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~~ 1176 (1338)
.++.+|++|.|+ .+++|+|+||+|++||.++|+||||||||||+++|.|+.+|.+|+|.+||.||.++ ..+.++|+|
T Consensus 2 ~L~~~~ls~~y~-~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 2 MLEVENLSFGYG-GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eeEEEEEEEEEC-CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 478999999996 67899999999999999999999999999999999999999999999999999988 345557999
Q ss_pred EcCCCCC-CCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCC
Q 000711 1177 VPQRPYT-CLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 1255 (1338)
Q Consensus 1177 VpQdP~L-F~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~ 1255 (1338)
|||+|.. |.-|++|-+.++..... .......+...+.+.++++.+++.++.++. -..
T Consensus 81 vpQ~~~~~~~~tV~d~V~~GR~p~~------------~~~~~~~~~D~~~v~~aL~~~~~~~la~r~----------~~~ 138 (258)
T COG1120 81 VPQSPSAPFGLTVYELVLLGRYPHL------------GLFGRPSKEDEEIVEEALELLGLEHLADRP----------VDE 138 (258)
T ss_pred eccCCCCCCCcEEeehHhhcCCccc------------ccccCCCHhHHHHHHHHHHHhCcHHHhcCc----------ccc
Confidence 9999754 55689988865421100 000000111122466678888887766552 246
Q ss_pred CChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHH----hcCCeEEEeccCCC-CcccccceEEEecCC
Q 000711 1256 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAK----DMGITFVTSSQRPA-LIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1256 LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~----~~~~TvI~IAHRl~-~i~~~d~~l~l~~g~ 1328 (1338)
||||||||+.|||||.++|+||+||||||+||...+-.+.++++ +.|+|+|+|.|.++ ..+|+|+++.|.+|+
T Consensus 139 LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~ 216 (258)
T COG1120 139 LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGK 216 (258)
T ss_pred cChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCe
Confidence 99999999999999999999999999999999999877766553 46899999999996 789999999997765
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-37 Score=341.17 Aligned_cols=198 Identities=24% Similarity=0.360 Sum_probs=168.3
Q ss_pred cEEEEeEEEEcCCC---CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc-c--------c
Q 000711 444 YIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-D--------L 511 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~---~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~-~--------~ 511 (1338)
.++++||++.|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. . .
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 58999999999753 5799999999999999999999999999999999999999999999998641 1 1
Q ss_pred -cccEEEEecCCCCCCC-CHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHH
Q 000711 512 -NKEIFYVPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1338)
Q Consensus 512 -~~~i~~v~Q~~~l~~~-tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlal 589 (1338)
++.++|+||+|.++.. |++||+.++............+++.++++.+++.+..++.+ .+||||||||++|
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LSgG~~qrl~l 156 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRP--------SELSGGERQRVAI 156 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCh--------hhCCHHHHHHHHH
Confidence 2569999999988765 99999987422110001112356788999999988777755 6899999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHhhcceEEEccC
Q 000711 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDG 649 (1338)
Q Consensus 590 ARal~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~~~d~i~~l~~ 649 (1338)
|||++.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+..+|++++|++
T Consensus 157 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~ 220 (233)
T PRK11629 157 ARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRD 220 (233)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEEC
Confidence 9999999999999999999999999999988754 38999999999999988899999976
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=338.76 Aligned_cols=196 Identities=29% Similarity=0.418 Sum_probs=164.7
Q ss_pred EEEeEEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc------cccccEEEE
Q 000711 446 EFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------DLNKEIFYV 518 (1338)
Q Consensus 446 ~~~~v~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~~~~~i~~v 518 (1338)
+++|+++.|+++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 368999988642 6799999999999999999999999999999999999999999999998641 234679999
Q ss_pred ecCC--CCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccC
Q 000711 519 PQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1338)
Q Consensus 519 ~Q~~--~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~ 596 (1338)
||+| .++..|++||+.++...........++++.++++.+++.+..++.+ ..||||||||++|||||+++
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~laral~~~ 152 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSP--------FTLSGGQKQRVAIAGVLAMD 152 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCc--------ccCCHHHHHHHHHHHHHhcC
Confidence 9998 3677899999987532110000112345778899999988777765 68999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHhh-cceEEEccC
Q 000711 597 PKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAF-HDVVLSLDG 649 (1338)
Q Consensus 597 p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~~-~d~i~~l~~ 649 (1338)
|+++||||||++||+.+++.+.+.+++ .|+|+|++||+++.+.. ||++++|++
T Consensus 153 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~ 209 (211)
T cd03225 153 PDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLED 209 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 999999999999999999999998764 37899999999998864 999999976
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=348.65 Aligned_cols=202 Identities=23% Similarity=0.327 Sum_probs=172.6
Q ss_pred ceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccccCCcccEEEEc
Q 000711 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 1178 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~~lr~~i~~Vp 1178 (1338)
.|+++||+..|.+.. +|+|+||+|+.||.++|+|||||||||++++|.||.+|++|+|.|||.|++++.-..++|++|+
T Consensus 3 ~i~l~~v~K~yg~~~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVF 81 (338)
T COG3839 3 ELELKNVRKSFGSFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVF 81 (338)
T ss_pred EEEEeeeEEEcCCce-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEe
Confidence 589999999997655 9999999999999999999999999999999999999999999999999999966656899999
Q ss_pred CCCCCCCC-CHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCCC
Q 000711 1179 QRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 1257 (1338)
Q Consensus 1179 QdP~LF~G-TIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LS 1257 (1338)
|++-||+- |+++||.||.... +. ..+..+..+.++.+.+++.+++++.| .+||
T Consensus 82 Q~yALyPhmtV~~Niaf~Lk~~----------~~------~k~ei~~rV~eva~~L~l~~lL~r~P----------~~LS 135 (338)
T COG3839 82 QNYALYPHMTVYENIAFGLKLR----------GV------PKAEIDKRVKEVAKLLGLEHLLNRKP----------LQLS 135 (338)
T ss_pred CCccccCCCcHHHHhhhhhhhC----------CC------chHHHHHHHHHHHHHcCChhHHhcCc----------ccCC
Confidence 99999975 9999999985320 00 00112456777888889988888875 4699
Q ss_pred hhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHH----HHHhcCCeEEEeccCC-CCcccccceEEEecC
Q 000711 1258 LGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYR----LAKDMGITFVTSSQRP-ALIPFHSLELRLIDG 1327 (1338)
Q Consensus 1258 gGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~----~~~~~~~TvI~IAHRl-~~i~~~d~~l~l~~g 1327 (1338)
||||||+||||||+|+|++++||||.|+||+.....+.. +-++.+.|+|.|+|+. +-+-..|++.++.+|
T Consensus 136 GGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G 210 (338)
T COG3839 136 GGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDG 210 (338)
T ss_pred hhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCC
Confidence 999999999999999999999999999999998765433 3334699999999998 688889999999643
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=359.77 Aligned_cols=198 Identities=25% Similarity=0.380 Sum_probs=172.3
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc----cccccEEEEe
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----DLNKEIFYVP 519 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~----~~~~~i~~v~ 519 (1338)
.++++||++.|+ +..+|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+. ..++.++|||
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~ 82 (353)
T TIGR03265 4 YLSIDNIRKRFG-AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVF 82 (353)
T ss_pred EEEEEEEEEEeC-CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 589999999996 46799999999999999999999999999999999999999999999999641 1246799999
Q ss_pred cCCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCC
Q 000711 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1338)
Q Consensus 520 Q~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ 598 (1338)
|++.+|+ .|++||+.|+............+++.++++.++++++.++.| .+||||||||++|||||+.+|+
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~--------~~LSgGq~QRvaLARaL~~~P~ 154 (353)
T TIGR03265 83 QSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYP--------GQLSGGQQQRVALARALATSPG 154 (353)
T ss_pred CCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCCh--------hhCCHHHHHHHHHHHHHhcCCC
Confidence 9998886 699999999754211111122457889999999999999877 6899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 599 FAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 599 illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
+++||||||+||+.+++.+.+.+++ .|+|+|+|||+++.+ ..+|++++|+++
T Consensus 155 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G 211 (353)
T TIGR03265 155 LLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHG 211 (353)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999887754 489999999999976 579999999873
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-37 Score=354.71 Aligned_cols=206 Identities=23% Similarity=0.228 Sum_probs=169.9
Q ss_pred CCCcEEEEeEEEEcCC-CCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCC-----CCccEEEeCCCCc-----
Q 000711 441 EANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS----- 509 (1338)
Q Consensus 441 ~~~~i~~~~v~~~~~~-~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~-----~~~G~i~~~~~~~----- 509 (1338)
..+.|+++|+++.|++ .+++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+.
T Consensus 77 ~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 77 HANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred cCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 3568999999999964 4689999999999999999999999999999999999996 5799999999752
Q ss_pred ---cccccEEEEecCCCCCCCCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHH
Q 000711 510 ---DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQ 585 (1338)
Q Consensus 510 ---~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQ 585 (1338)
.+++.++||||+|++|++|++|||.|+....... ....++.+.++++.+++.+.++.. ..+.+.+|||||||
T Consensus 157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~----~~~~~~~LSgGqkq 232 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDD----LDKAGNALSGGQQQ 232 (329)
T ss_pred chHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhh----hhCCcccCCHHHHH
Confidence 3467899999999999999999999853211100 001112357788888875433211 11346899999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhHhh-cceEEEccCC
Q 000711 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAF-HDVVLSLDGE 650 (1338)
Q Consensus 586 RlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~~~-~d~i~~l~~~ 650 (1338)
|++||||++++|+++||||||++||+++.+.+.+.+++ .++|+|+|||+++++.. ||+|++|+++
T Consensus 233 Rl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G 300 (329)
T PRK14257 233 RLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQG 300 (329)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999888865 37999999999999875 9999999873
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-37 Score=353.32 Aligned_cols=201 Identities=21% Similarity=0.270 Sum_probs=168.7
Q ss_pred CCcEEEEeEEEEcCCC----CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC--c------
Q 000711 442 ANYIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--S------ 509 (1338)
Q Consensus 442 ~~~i~~~~v~~~~~~~----~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~--~------ 509 (1338)
...|+++||++.|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence 3469999999999742 469999999999999999999999999999999999999999999999843 1
Q ss_pred --------------cccccEEEEecCC--CCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCc-hHHhcCCCCcc
Q 000711 510 --------------DLNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKE 572 (1338)
Q Consensus 510 --------------~~~~~i~~v~Q~~--~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~ 572 (1338)
.++++++||+|+| +++..|++|||.++............+++.++++.+++. ++.++.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---- 174 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSP---- 174 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCc----
Confidence 2356799999998 688899999998864211100111224567788899996 5666654
Q ss_pred ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhH-hhcceEEEcc
Q 000711 573 INWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLD 648 (1338)
Q Consensus 573 ~~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~-~~~d~i~~l~ 648 (1338)
.+||||||||++|||||+.+|+++||||||++||+.++..+++.+++ .|+|+|+|||+++.+ ..||++++|+
T Consensus 175 ----~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~ 250 (320)
T PRK13631 175 ----FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMD 250 (320)
T ss_pred ----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 68999999999999999999999999999999999999999998753 489999999999976 6799999998
Q ss_pred CC
Q 000711 649 GE 650 (1338)
Q Consensus 649 ~~ 650 (1338)
++
T Consensus 251 ~G 252 (320)
T PRK13631 251 KG 252 (320)
T ss_pred CC
Confidence 73
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-37 Score=350.53 Aligned_cols=197 Identities=25% Similarity=0.357 Sum_probs=167.0
Q ss_pred EEEEeEEEEcCCC----CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc--------ccc
Q 000711 445 IEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------DLN 512 (1338)
Q Consensus 445 i~~~~v~~~~~~~----~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~--------~~~ 512 (1338)
++++||++.|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..+
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 7899999999753 4799999999999999999999999999999999999999999999999641 234
Q ss_pred ccEEEEecCC--CCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCc--hHHhcCCCCccccCCCCCChhHHHHHH
Q 000711 513 KEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE--YLLDRYPPEKEINWGDELSLGEQQRLG 588 (1338)
Q Consensus 513 ~~i~~v~Q~~--~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~~~~~~g~~LSgGqkQRla 588 (1338)
++++||||+| .++..|++||+.++............+++.++++.++++ ++.++.+ ..||||||||++
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~--------~~LSgGq~qrv~ 154 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSP--------FELSGGQKRRVA 154 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCc--------ccCCHHHHHHHH
Confidence 6799999998 567889999998753211110111234577899999997 5566654 689999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhH-hhcceEEEccC
Q 000711 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1338)
Q Consensus 589 lARal~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~-~~~d~i~~l~~ 649 (1338)
|||||+.+|+++||||||++||+.+...+++.+++ .|+|+|++||+++.+ ..||+|++|++
T Consensus 155 iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~ 220 (287)
T PRK13637 155 IAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNK 220 (287)
T ss_pred HHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999988753 389999999999987 57999999986
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-37 Score=349.37 Aligned_cols=198 Identities=28% Similarity=0.363 Sum_probs=170.2
Q ss_pred cEEEEeEEEEcCC--CCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc------cccccE
Q 000711 444 YIEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------DLNKEI 515 (1338)
Q Consensus 444 ~i~~~~v~~~~~~--~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~~~~~i 515 (1338)
.++++||++.|++ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 5899999999974 25699999999999999999999999999999999999999999999999641 235679
Q ss_pred EEEecCCC--CCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHH
Q 000711 516 FYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1338)
Q Consensus 516 ~~v~Q~~~--l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal 593 (1338)
+|+||+|. ++..|++|||.++...........++++.++++.++++++.++.| .+||||||||++|||||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--------~~LSgGq~qrv~lAral 155 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP--------ARLSGGQKQRVAIAGAV 155 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc--------ccCCHHHHHHHHHHHHH
Confidence 99999983 566799999998643211101112356788999999998888876 68999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHhhcceEEEccC
Q 000711 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDG 649 (1338)
Q Consensus 594 ~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~~~d~i~~l~~ 649 (1338)
+.+|+++||||||++||+.+.+.+++.+++ .|+|+|++||+++.+..||++++|++
T Consensus 156 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~ 215 (279)
T PRK13650 156 AMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKN 215 (279)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEEC
Confidence 999999999999999999999999887753 38999999999998889999999976
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=342.05 Aligned_cols=196 Identities=24% Similarity=0.299 Sum_probs=167.0
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc-cccccEEEEecCCC
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-DLNKEIFYVPQRPY 523 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~-~~~~~i~~v~Q~~~ 523 (1338)
++++|+++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..+..++|+||++.
T Consensus 2 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~ 80 (255)
T PRK11248 2 LQISHLYADYGG-KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEG 80 (255)
T ss_pred EEEEEEEEEeCC-eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCc
Confidence 789999999964 6899999999999999999999999999999999999999999999998652 23346999999998
Q ss_pred CCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 000711 524 TAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAIL 602 (1338)
Q Consensus 524 l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~illL 602 (1338)
++. .|++||+.++............+++.++++.+++.+..++.+ .+||||||||++|||||+++|+++||
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LSgGq~qrl~laral~~~p~lllL 152 (255)
T PRK11248 81 LLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYI--------WQLSGGQRQRVGIARALAANPQLLLL 152 (255)
T ss_pred cCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 776 699999987532111001112346788999999988777655 68999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhH-hhcceEEEccC
Q 000711 603 DECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1338)
Q Consensus 603 DEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~-~~~d~i~~l~~ 649 (1338)
||||++||+.+...+.+.+++ .|+|+|++||+++.+ ..||++++|++
T Consensus 153 DEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~ 204 (255)
T PRK11248 153 DEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSP 204 (255)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 999999999999999988764 389999999999987 47999999985
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-37 Score=341.17 Aligned_cols=198 Identities=27% Similarity=0.387 Sum_probs=167.7
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc----cccccEEEEe
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----DLNKEIFYVP 519 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~----~~~~~i~~v~ 519 (1338)
.++++||++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++|+|
T Consensus 2 ~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~ 80 (239)
T cd03296 2 SIEVRNVSKRFGD-FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVF 80 (239)
T ss_pred EEEEEeEEEEECC-EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEe
Confidence 3789999999964 6899999999999999999999999999999999999999999999998641 1245799999
Q ss_pred cCCCCCC-CCHHHHhcCCCCCCcc----cCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000711 520 QRPYTAV-GTLRDQLIYPLTSDQE----VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1338)
Q Consensus 520 Q~~~l~~-~tl~eni~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1338)
|+|.++. .|++||+.++...... ......+++.++++.+++++..++.+ .+||||||||++|||||+
T Consensus 81 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~la~al~ 152 (239)
T cd03296 81 QHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP--------AQLSGGQRQRVALARALA 152 (239)
T ss_pred cCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh--------hhCCHHHHHHHHHHHHHh
Confidence 9998875 6999999876421110 00112345678899999988877765 689999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 595 HKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 595 ~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+ ..+|++++|+++
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G 213 (239)
T cd03296 153 VEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKG 213 (239)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999988764 378999999999976 579999999863
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=338.94 Aligned_cols=197 Identities=24% Similarity=0.310 Sum_probs=167.6
Q ss_pred EEEEeEEEEcCCC---CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC-----ccccccEE
Q 000711 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIF 516 (1338)
Q Consensus 445 i~~~~v~~~~~~~---~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~-----~~~~~~i~ 516 (1338)
++++||++.|++. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 6899999999753 179999999999999999999999999999999999999999999999864 12356799
Q ss_pred EEecCCCCCCC-CHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHcc
Q 000711 517 YVPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1338)
Q Consensus 517 ~v~Q~~~l~~~-tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~ 595 (1338)
|+||+|.++.. |++||+.++............+++.++++.+++.+..++.+ .+||||||||++||||++.
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~~ 153 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRV--------GGFSTGMRQKVAIARALVH 153 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhh--------hhcCHHHHHHHHHHHHHhc
Confidence 99999988874 99999976432111001112456788999999988877755 6899999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 596 KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 596 ~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+. .+|++++|++
T Consensus 154 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~ 211 (218)
T cd03266 154 DPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHR 211 (218)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 9999999999999999999999988764 4899999999998764 7999999976
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=337.39 Aligned_cols=198 Identities=25% Similarity=0.334 Sum_probs=167.5
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc---------cccccE
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DLNKEI 515 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~---------~~~~~i 515 (1338)
++++|+++.|++++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 81 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQI 81 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhhe
Confidence 78999999996557899999999999999999999999999999999999999999999998641 134679
Q ss_pred EEEecCCCC-CCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000711 516 FYVPQRPYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1338)
Q Consensus 516 ~~v~Q~~~l-~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1338)
+|+||+|.+ +..|++||+.++............+++.++++.+++.+..++.+ .+||||||||++||||++
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~ 153 (222)
T PRK10908 82 GMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFP--------IQLSGGEQQRVGIARAVV 153 (222)
T ss_pred EEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCc--------hhCCHHHHHHHHHHHHHH
Confidence 999999986 56799999987532111001112335678899999988877765 689999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHh-hcceEEEccCC
Q 000711 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 595 ~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
++|+++||||||++||+.+.+.+.+.+++ .+.|+|++||+++.+. .+|++++|+++
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 213 (222)
T PRK10908 154 NKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDG 213 (222)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999887764 4789999999999886 58999999863
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-37 Score=335.66 Aligned_cols=196 Identities=24% Similarity=0.375 Sum_probs=166.2
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc----cccccEEEEec
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----DLNKEIFYVPQ 520 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~----~~~~~i~~v~Q 520 (1338)
++++|+++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++|+||
T Consensus 1 i~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q 79 (213)
T cd03301 1 VELENVTKRFGN-VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQ 79 (213)
T ss_pred CEEEeeEEEECC-eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEec
Confidence 468999999864 6899999999999999999999999999999999999999999999998641 12357999999
Q ss_pred CCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCE
Q 000711 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1338)
Q Consensus 521 ~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~i 599 (1338)
++.++. .|++||+.++...........++++.++++.+++.+..++.+ .+||||||||++||||++++|++
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qr~~laral~~~p~l 151 (213)
T cd03301 80 NYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP--------KQLSGGQRQRVALGRAIVREPKV 151 (213)
T ss_pred ChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCCh--------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 998875 699999987532111001112346678899999988887766 68999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 600 llLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
+||||||++||+.+.+.+++.+++ .|+|+|++||+++.+. .+|+++++++
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~ 206 (213)
T cd03301 152 FLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMND 206 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEEC
Confidence 999999999999999999988764 3899999999998765 6899999976
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-37 Score=358.17 Aligned_cols=200 Identities=22% Similarity=0.307 Sum_probs=172.2
Q ss_pred CCcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCc--cEEEeCCCCc----cccccE
Q 000711 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS--GHIAKPGVGS----DLNKEI 515 (1338)
Q Consensus 442 ~~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~--G~i~~~~~~~----~~~~~i 515 (1338)
.+.++++||++.|+ +.++|+|+||+|++||+++|+||||||||||+|+|+|+.+|++ |+|.++|.+. ..++.|
T Consensus 3 ~~~l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~i 81 (362)
T TIGR03258 3 CGGIRIDHLRVAYG-ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGL 81 (362)
T ss_pred ceEEEEEEEEEEEC-CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCE
Confidence 35799999999996 4679999999999999999999999999999999999999999 9999998641 124679
Q ss_pred EEEecCCCCCCC-CHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000711 516 FYVPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1338)
Q Consensus 516 ~~v~Q~~~l~~~-tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1338)
+||+|++.+|.. |++||+.|+...........+.++.++++.++|+++.++.| .+||||||||++|||||+
T Consensus 82 g~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~--------~~LSgGq~QRvaLARAL~ 153 (362)
T TIGR03258 82 ALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP--------AQLSGGMQQRIAIARAIA 153 (362)
T ss_pred EEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh--------hhCCHHHHHHHHHHHHHh
Confidence 999999988865 99999998753211111122356788999999999999887 689999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHc---c--CCeEEEEecChhhH-hhcceEEEccCC
Q 000711 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---M--GTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 595 ~~p~illLDEpts~LD~~~~~~i~~~l~~---~--~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
.+|++++||||||+||+...+.+.+.+++ . |+|+|+|||+++.+ ..+|+|++|+++
T Consensus 154 ~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G 215 (362)
T TIGR03258 154 IEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDG 215 (362)
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999887753 2 78999999999976 579999999863
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=339.60 Aligned_cols=193 Identities=21% Similarity=0.307 Sum_probs=169.6
Q ss_pred CcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC-ccccccEEEEecC
Q 000711 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQR 521 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~-~~~~~~i~~v~Q~ 521 (1338)
..|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|++|+
T Consensus 11 ~~l~i~~l~~~~~-~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~ 89 (257)
T PRK11247 11 TPLLLNAVSKRYG-ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQD 89 (257)
T ss_pred CcEEEEEEEEEEC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecC
Confidence 4699999999996 4689999999999999999999999999999999999999999999998754 3446689999999
Q ss_pred CCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEE
Q 000711 522 PYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 600 (1338)
Q Consensus 522 ~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~il 600 (1338)
+.++. .|++||+.++... ..++++.++++.+++.+..++.+ .+||||||||++|||||+++|+++
T Consensus 90 ~~l~~~~tv~enl~~~~~~------~~~~~~~~~l~~~gl~~~~~~~~--------~~LSgGqkqrl~laraL~~~p~ll 155 (257)
T PRK11247 90 ARLLPWKKVIDNVGLGLKG------QWRDAALQALAAVGLADRANEWP--------AALSGGQKQRVALARALIHRPGLL 155 (257)
T ss_pred ccCCCCCcHHHHHHhcccc------hHHHHHHHHHHHcCChhHhcCCh--------hhCCHHHHHHHHHHHHHhcCCCEE
Confidence 98876 6999999886321 12457788999999988777765 689999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 601 ILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 601 lLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
||||||++||+.+...+.+.+++ .++|+|+|||+++.+ ..||++++|+++
T Consensus 156 lLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G 210 (257)
T PRK11247 156 LLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEG 210 (257)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999888754 389999999999986 579999999863
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=357.47 Aligned_cols=199 Identities=26% Similarity=0.402 Sum_probs=172.0
Q ss_pred CcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc----cccccEEEE
Q 000711 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----DLNKEIFYV 518 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~----~~~~~i~~v 518 (1338)
..++++|+++.|+ +.++++|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+. ..++.++||
T Consensus 13 ~~L~l~~l~~~~~-~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 91 (375)
T PRK09452 13 PLVELRGISKSFD-GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTV 91 (375)
T ss_pred ceEEEEEEEEEEC-CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 4699999999996 46799999999999999999999999999999999999999999999999651 124679999
Q ss_pred ecCCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCC
Q 000711 519 PQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1338)
Q Consensus 519 ~Q~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p 597 (1338)
||++.+|+ .|++|||.|+............+++.++++.++++++.++.| .+||||||||++|||||+.+|
T Consensus 92 fQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p--------~~LSgGq~QRVaLARaL~~~P 163 (375)
T PRK09452 92 FQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP--------HQLSGGQQQRVAIARAVVNKP 163 (375)
T ss_pred ecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh--------hhCCHHHHHHHHHHHHHhcCC
Confidence 99998875 599999999754211111112346788999999999999988 689999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 598 KFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 598 ~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
+++|||||||+||...+..+.+.+++ .|+|+|+|||+++.+ ..+|+|++|+++
T Consensus 164 ~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G 221 (375)
T PRK09452 164 KVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDG 221 (375)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999887754 489999999999875 579999999863
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=337.95 Aligned_cols=200 Identities=26% Similarity=0.418 Sum_probs=172.0
Q ss_pred EEEEeEEEEcCC-CCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC------ccccccEEE
Q 000711 445 IEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1338)
Q Consensus 445 i~~~~v~~~~~~-~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~ 517 (1338)
++++|+++.|++ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 468999999964 4679999999999999999999999999999999999999999999999864 123567999
Q ss_pred EecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHc
Q 000711 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFY 594 (1338)
Q Consensus 518 v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~ 594 (1338)
+||++++++.|++||+.++... ....++.+.++..++.++++.+|.+... ....+||||||||++||||++
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~------~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 154 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPG------MSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALI 154 (237)
T ss_pred EcCCchhccchHHHHhhccCCC------CCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 9999999999999999886421 2344566777778888888776543221 246799999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhHhhcceEEEccCC
Q 000711 595 HKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 595 ~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~~~~d~i~~l~~~ 650 (1338)
.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+..+|++++++++
T Consensus 155 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G 212 (237)
T cd03252 155 HNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKG 212 (237)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECC
Confidence 99999999999999999999999998865 389999999999999889999999863
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-37 Score=356.81 Aligned_cols=199 Identities=27% Similarity=0.373 Sum_probs=169.6
Q ss_pred cEEEEeEEEEcCC---CCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc---------cc
Q 000711 444 YIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DL 511 (1338)
Q Consensus 444 ~i~~~~v~~~~~~---~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~---------~~ 511 (1338)
+|+++||++.|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. ..
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 3789999999972 36899999999999999999999999999999999999999999999998641 12
Q ss_pred cccEEEEecCCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHH
Q 000711 512 NKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1338)
Q Consensus 512 ~~~i~~v~Q~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalA 590 (1338)
+++++|+||++.++. .|++||+.++............+++.++++.+++.+..++.+ .+||||||||++||
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--------~~LSgGq~qRv~lA 152 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYP--------AQLSGGQKQRVAIA 152 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh--------hhCCHHHHHHHHHH
Confidence 467999999998876 699999987632111001112346778999999998888766 68999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHh-hcceEEEccCC
Q 000711 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 591 Ral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
|||+++|+++||||||++||+.+...+++.+++ .|+|+|++||+++.+. .||++++|+++
T Consensus 153 raL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G 217 (343)
T PRK11153 153 RALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAG 217 (343)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999998764 3899999999999875 69999999863
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=341.10 Aligned_cols=197 Identities=24% Similarity=0.352 Sum_probs=167.7
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc---------cccccE
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DLNKEI 515 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~---------~~~~~i 515 (1338)
++++||++.|+.++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.+
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRI 81 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhhe
Confidence 68999999996356799999999999999999999999999999999999999999999998641 135679
Q ss_pred EEEecCCCCCC-CCHHHHhcCCCCCCc--------ccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHH
Q 000711 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQ--------EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQR 586 (1338)
Q Consensus 516 ~~v~Q~~~l~~-~tl~eni~~~~~~~~--------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQR 586 (1338)
+|+||++.++. .|++||+.++..... ......++++.++++.+++.+..++.+ .+||||||||
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qr 153 (243)
T TIGR02315 82 GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA--------DQLSGGQQQR 153 (243)
T ss_pred EEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc--------ccCCHHHHHH
Confidence 99999998775 699999987542110 001122456788899999988777655 6899999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhH-hhcceEEEccC
Q 000711 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1338)
Q Consensus 587 lalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~-~~~d~i~~l~~ 649 (1338)
++|||||+.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+ ..||++++|++
T Consensus 154 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~ 221 (243)
T TIGR02315 154 VAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKA 221 (243)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEEC
Confidence 9999999999999999999999999999999888754 378999999999987 57999999986
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-37 Score=338.10 Aligned_cols=198 Identities=21% Similarity=0.243 Sum_probs=167.6
Q ss_pred EEEEeEEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc-----cccccEEEE
Q 000711 445 IEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-----DLNKEIFYV 518 (1338)
Q Consensus 445 i~~~~v~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~-----~~~~~i~~v 518 (1338)
|+++||++.|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .++++++|+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 4789999999653 6899999999999999999999999999999999999999999999998651 235679999
Q ss_pred ecCCCCC-CCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCC
Q 000711 519 PQRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1338)
Q Consensus 519 ~Q~~~l~-~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p 597 (1338)
+|++.++ ..|++||+.++............+++.++++.+++.+..++.+ .+||||||||++||||++.+|
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al~~~p 152 (220)
T cd03263 81 PQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRA--------RTLSGGMKRKLSLAIALIGGP 152 (220)
T ss_pred cCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChh--------hhCCHHHHHHHHHHHHHhcCC
Confidence 9999887 5799999987532111000112346778899999987777654 689999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhHh-hcceEEEccCC
Q 000711 598 KFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 598 ~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+. .+|++++++++
T Consensus 153 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g 208 (220)
T cd03263 153 SVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDG 208 (220)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECC
Confidence 99999999999999999999998875 3689999999999875 69999999863
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=333.55 Aligned_cols=200 Identities=31% Similarity=0.440 Sum_probs=176.0
Q ss_pred cEEEEeEEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC------ccccccEE
Q 000711 444 YIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 516 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~ 516 (1338)
.++++|+++.|+++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRIS 81 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence 48899999999753 589999999999999999999999999999999999999999999999864 13456899
Q ss_pred EEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccc---cCCCCCChhHHHHHHHHHHH
Q 000711 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLF 593 (1338)
Q Consensus 517 ~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal 593 (1338)
|+||+|.++.+|++||+.+... ...+++.++++.+++.+.+++++.+..+ .+...||||||||++||||+
T Consensus 82 ~~~q~~~l~~~tv~enl~~~~~-------~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral 154 (221)
T cd03244 82 IIPQDPVLFSGTIRSNLDPFGE-------YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARAL 154 (221)
T ss_pred EECCCCccccchHHHHhCcCCC-------CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHH
Confidence 9999999999999999975421 2456788889999999988876654332 35789999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhHhhcceEEEccCC
Q 000711 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 594 ~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~~~~d~i~~l~~~ 650 (1338)
+++|+++||||||++||+.+++.+.+.+++ .+.|+|++||+++.+..+|++++|+++
T Consensus 155 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g 213 (221)
T cd03244 155 LRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKG 213 (221)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECC
Confidence 999999999999999999999999998875 378999999999999899999999863
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=327.73 Aligned_cols=191 Identities=28% Similarity=0.449 Sum_probs=167.1
Q ss_pred EEEEeEEEEcCCC----CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCccccccEEEEec
Q 000711 445 IEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520 (1338)
Q Consensus 445 i~~~~v~~~~~~~----~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q 520 (1338)
++++||++.|++. +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|+|+||
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------~i~~~~q 73 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------SIAYVSQ 73 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------EEEEEec
Confidence 4789999999764 3799999999999999999999999999999999999999999999987 6999999
Q ss_pred CCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCcc---ccCCCCCChhHHHHHHHHHHHccCC
Q 000711 521 RPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKE---INWGDELSLGEQQRLGMARLFYHKP 597 (1338)
Q Consensus 521 ~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~---~~~g~~LSgGqkQRlalARal~~~p 597 (1338)
+|.++++|++||+.++.. ..+++..++++.+++.+.++..|.+.. .....+||+|||||++||||++.+|
T Consensus 74 ~~~l~~~t~~enl~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 74 EPWIQNGTIRENILFGKP-------FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred CchhccCcHHHHhccCCC-------cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999998642 124456778888899888887764332 2346789999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHH-HH---ccCCeEEEEecChhhHhhcceEEEccC
Q 000711 598 KFAILDECTSAVTTDMEERFCAK-VR---AMGTSCITISHRPALVAFHDVVLSLDG 649 (1338)
Q Consensus 598 ~illLDEpts~LD~~~~~~i~~~-l~---~~~~t~i~itH~~~~~~~~d~i~~l~~ 649 (1338)
++++|||||++||+++.+.+.+. ++ +.|+|+|++||+++.+..+|++++|++
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~ 202 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDN 202 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeC
Confidence 99999999999999999888774 43 247999999999999888999999976
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=336.06 Aligned_cols=201 Identities=27% Similarity=0.432 Sum_probs=174.7
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC------ccccccEEE
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~ 517 (1338)
.++++|+++.|++++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence 58999999999755679999999999999999999999999999999999999999999999854 123567999
Q ss_pred EecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHc
Q 000711 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFY 594 (1338)
Q Consensus 518 v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~ 594 (1338)
+||+++++.+|++||+.++... ....++.++++.+++.++.+++|.+... ....+||||||||++|||||+
T Consensus 82 ~~q~~~~~~~tv~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~ 155 (229)
T cd03254 82 VLQDTFLFSGTIMENIRLGRPN------ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAML 155 (229)
T ss_pred ecCCchhhhhHHHHHHhccCCC------CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHh
Confidence 9999999989999999886432 2345677888889998888887633221 245789999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhHhhcceEEEccCC
Q 000711 595 HKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 595 ~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~~~~d~i~~l~~~ 650 (1338)
.+|+++||||||++||+.+.+.+++.+++ .++|+|++||+++.+..||++++|+++
T Consensus 156 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g 213 (229)
T cd03254 156 RDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDG 213 (229)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCC
Confidence 99999999999999999999999998865 379999999999998889999999863
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=349.72 Aligned_cols=197 Identities=19% Similarity=0.266 Sum_probs=167.2
Q ss_pred EEEEeEEEEcCCC----CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc-----------
Q 000711 445 IEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----------- 509 (1338)
Q Consensus 445 i~~~~v~~~~~~~----~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~----------- 509 (1338)
|+++||++.|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 7899999999753 3699999999999999999999999999999999999999999999986431
Q ss_pred -------------------cccccEEEEecCC--CCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCc-hHHhcC
Q 000711 510 -------------------DLNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRY 567 (1338)
Q Consensus 510 -------------------~~~~~i~~v~Q~~--~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~ 567 (1338)
.+++.|+||||+| .++..|++|||.|+...........++++.++++.++|. ++.++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~ 162 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRS 162 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCC
Confidence 2346799999986 577789999999864321111112245678899999996 677776
Q ss_pred CCCccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhH-hhcce
Q 000711 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDV 643 (1338)
Q Consensus 568 ~~~~~~~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~-~~~d~ 643 (1338)
| .+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++ .|+|+|+|||+++.+ ..||+
T Consensus 163 ~--------~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adr 234 (305)
T PRK13651 163 P--------FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKR 234 (305)
T ss_pred h--------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCE
Confidence 6 68999999999999999999999999999999999999999887754 489999999999865 68999
Q ss_pred EEEccC
Q 000711 644 VLSLDG 649 (1338)
Q Consensus 644 i~~l~~ 649 (1338)
|++|++
T Consensus 235 v~vl~~ 240 (305)
T PRK13651 235 TIFFKD 240 (305)
T ss_pred EEEEEC
Confidence 999976
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=340.00 Aligned_cols=197 Identities=23% Similarity=0.354 Sum_probs=167.3
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc---------cccccE
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DLNKEI 515 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~---------~~~~~i 515 (1338)
++++||++.|++++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 46899999996546899999999999999999999999999999999999999999999998641 124579
Q ss_pred EEEecCCCCCC-CCHHHHhcCCCCCC--------cccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHH
Q 000711 516 FYVPQRPYTAV-GTLRDQLIYPLTSD--------QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQR 586 (1338)
Q Consensus 516 ~~v~Q~~~l~~-~tl~eni~~~~~~~--------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQR 586 (1338)
+|+||++.++. .|++||+.++.... .......++++.++++.+++.+..++.+ .+||||||||
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qr 152 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA--------DQLSGGQQQR 152 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc--------ccCCHHHHHH
Confidence 99999998766 69999998753210 0001122456778899999987777654 6899999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 587 lalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
++||||++++|+++||||||++||+.+.+.+++.+++ .|+|+|++||+++.+. .+|++++|++
T Consensus 153 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~ 220 (241)
T cd03256 153 VAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKD 220 (241)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999988764 3899999999999887 8999999986
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-37 Score=336.82 Aligned_cols=203 Identities=25% Similarity=0.321 Sum_probs=164.6
Q ss_pred eEEeeeEEeCCCc-cccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc-----CCccc
Q 000711 1100 ISFSKLDIITPSQ-KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSGCG 1173 (1338)
Q Consensus 1100 I~f~nV~f~yp~~-~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~-----~lr~~ 1173 (1338)
|+++||++.|++. +++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.++|.++.... ..|++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 6899999999754 57999999999999999999999999999999999999999999999999886542 13457
Q ss_pred EEEEcCCCCCCC-CCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcc
Q 000711 1174 IFYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNW 1252 (1338)
Q Consensus 1174 i~~VpQdP~LF~-GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~ 1252 (1338)
++||||+|.+|. .|++||+.++... .+. ..+..++.+.++++.+++.+..++.
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~----------~~~------~~~~~~~~~~~~l~~~~l~~~~~~~---------- 135 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRI----------IGV------PPRDANERVSAALEKVGLEGKAHAL---------- 135 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHh----------cCC------CHHHHHHHHHHHHHHcCChhhhhCC----------
Confidence 999999999987 5999999754110 000 0001123456677777775444332
Q ss_pred cCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCCCcc-cccceEEEecCC
Q 000711 1253 EDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALIP-FHSLELRLIDGE 1328 (1338)
Q Consensus 1253 g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~~i~-~~d~~l~l~~g~ 1328 (1338)
..+||||||||++||||++++|++|||||||++||.++.+.+.+.+++ .++|+|+|+|+++.+. ++|+++.|.+|+
T Consensus 136 ~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~ 215 (216)
T TIGR00960 136 PMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGR 215 (216)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 246999999999999999999999999999999999999888776643 4899999999998764 789999997663
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=335.95 Aligned_cols=199 Identities=28% Similarity=0.357 Sum_probs=169.2
Q ss_pred CcEEEEeEEEEcCCC---CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc-c--------
Q 000711 443 NYIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-D-------- 510 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~~---~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~-~-------- 510 (1338)
..++++|+++.|+++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 468999999999753 3699999999999999999999999999999999999999999999998641 1
Q ss_pred c-cccEEEEecCCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHH
Q 000711 511 L-NKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1338)
Q Consensus 511 ~-~~~i~~v~Q~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRla 588 (1338)
. ++.++|+||+|.++. .|+.||+.++............+++.++++.+++.+..++.+ ..||||||||++
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~Ge~qrl~ 156 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP--------AQLSGGEQQRVA 156 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh--------hhCCHHHHHHHH
Confidence 1 247999999998876 499999986431111001122456788999999998887766 689999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHhhcceEEEccC
Q 000711 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDG 649 (1338)
Q Consensus 589 lARal~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~~~d~i~~l~~ 649 (1338)
|||||+.+|+++||||||++||+.+.+.+.+.+++ .|.|+|++||+++.+..+|+++++++
T Consensus 157 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~ 221 (228)
T PRK10584 157 LARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVN 221 (228)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999988753 38899999999998888999999976
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=347.96 Aligned_cols=199 Identities=23% Similarity=0.285 Sum_probs=168.0
Q ss_pred cEEEEeEEEEcCCC----CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc----------
Q 000711 444 YIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------- 509 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~----~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~---------- 509 (1338)
+|+++||++.|+.+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 37899999999743 3599999999999999999999999999999999999999999999998641
Q ss_pred cccccEEEEecCC--CCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCc-hHHhcCCCCccccCCCCCChhHHHH
Q 000711 510 DLNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQR 586 (1338)
Q Consensus 510 ~~~~~i~~v~Q~~--~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~g~~LSgGqkQR 586 (1338)
.+++.++||+|+| .++..|+.||+.|+...........++++.++++.+++. ++.++.+ ..||||||||
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~--------~~LSgGqkqr 152 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSP--------FELSGGQMRR 152 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCc--------ccCCHHHHHH
Confidence 2356799999998 788889999998864221110111234677889999995 4666655 6899999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 587 lalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
++|||||+.+|+++||||||++||+.+...+.+.+++ .|+|+|++||+++.+ ..||+|++|+++
T Consensus 153 vaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G 220 (288)
T PRK13643 153 VAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKG 220 (288)
T ss_pred HHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999888754 489999999999987 579999999873
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=335.52 Aligned_cols=208 Identities=26% Similarity=0.311 Sum_probs=177.8
Q ss_pred CceEEeeeEEeCCC-ccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccE
Q 000711 1098 DSISFSKLDIITPS-QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGI 1174 (1338)
Q Consensus 1098 g~I~f~nV~f~yp~-~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i 1174 (1338)
|.|+++|+++.|+. .+++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.++|.++... ...++++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 46899999999975 45799999999999999999999999999999999999999999999999988754 2345679
Q ss_pred EEEcCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCc-cc
Q 000711 1175 FYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLN-WE 1253 (1338)
Q Consensus 1175 ~~VpQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~-~g 1253 (1338)
+|+||+|.+|++|++|||.+.... ....+.++++.+++...+.+++.|+++..+ +.
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~-----------------------~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~ 137 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEY-----------------------SDEELWQALERVGLKEFVESLPGGLDTVVEEGG 137 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCC-----------------------CHHHHHHHHHHhCcHHHHHhcccccccccccCC
Confidence 999999999999999999642111 122344556667777777777889988763 67
Q ss_pred CCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1254 DILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1254 ~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
.+||+|||||++||||++++|+++||||||++||+.+.+.+.+.+++ .+.|+|+++|+++.+..+|+++.|.+|+
T Consensus 138 ~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~ 214 (221)
T cd03244 138 ENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGR 214 (221)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCe
Confidence 89999999999999999999999999999999999999988877754 4789999999998888899999997664
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=333.05 Aligned_cols=197 Identities=25% Similarity=0.325 Sum_probs=167.0
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC--ccccccEEEEecCC
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--SDLNKEIFYVPQRP 522 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~--~~~~~~i~~v~Q~~ 522 (1338)
++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+||++
T Consensus 1 l~~~~l~~~~~-~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~ 79 (210)
T cd03269 1 LEVENVTKRFG-RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEER 79 (210)
T ss_pred CEEEEEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCC
Confidence 46899999986 4689999999999999999999999999999999999999999999999865 22356799999999
Q ss_pred CCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000711 523 YTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601 (1338)
Q Consensus 523 ~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ill 601 (1338)
.++. .|++||+.++...........++++.++++.+++.+..++.+ .+||||||||++||||++.+|++++
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~la~al~~~p~~ll 151 (210)
T cd03269 80 GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRV--------EELSKGNQQKVQFIAAVIHDPELLI 151 (210)
T ss_pred cCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcH--------hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8876 499999987432111001112456788899999988777655 6899999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHh-hcceEEEccCC
Q 000711 602 LDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 602 LDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
|||||++||+.+.+.+.+.+++ .++|+|++||+++.+. .+|++++|+++
T Consensus 152 lDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g 204 (210)
T cd03269 152 LDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKG 204 (210)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCC
Confidence 9999999999999999988764 3789999999999874 69999999863
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-37 Score=353.97 Aligned_cols=203 Identities=21% Similarity=0.251 Sum_probs=167.0
Q ss_pred eEEeeeEEeCCC---ccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc-----CCc
Q 000711 1100 ISFSKLDIITPS---QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSG 1171 (1338)
Q Consensus 1100 I~f~nV~f~yp~---~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~-----~lr 1171 (1338)
|+|+||+++|++ ..++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.... ..|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999863 257999999999999999999999999999999999999999999999999997652 235
Q ss_pred ccEEEEcCCCCCCC-CCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC
Q 000711 1172 CGIFYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 1250 (1338)
Q Consensus 1172 ~~i~~VpQdP~LF~-GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~ 1250 (1338)
++|+||||++.+|. .|+++|+.+|... .+.. ....++.+.++++.++|.+..++.
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~----------~~~~------~~~~~~~v~e~l~~vgL~~~~~~~-------- 137 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLEL----------DNTP------KDEIKRKVTELLALVGLGDKHDSY-------- 137 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHH----------cCCC------HHHHHHHHHHHHHHcCCchhhhCC--------
Confidence 68999999999995 7999999875310 0000 000123456777888876544332
Q ss_pred cccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCc-ccccceEEEe
Q 000711 1251 NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLI 1325 (1338)
Q Consensus 1251 ~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i-~~~d~~l~l~ 1325 (1338)
..+||||||||++|||||+.+|++|+||||||+||+++.+.+.+++++ .|+|+|+|+|+++.+ +++|++++|.
T Consensus 138 --~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~ 215 (343)
T TIGR02314 138 --PSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVIS 215 (343)
T ss_pred --hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 357999999999999999999999999999999999999887776543 489999999999876 6799999997
Q ss_pred cCC
Q 000711 1326 DGE 1328 (1338)
Q Consensus 1326 ~g~ 1328 (1338)
+|+
T Consensus 216 ~G~ 218 (343)
T TIGR02314 216 NGE 218 (343)
T ss_pred CCE
Confidence 764
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=353.53 Aligned_cols=198 Identities=26% Similarity=0.400 Sum_probs=170.6
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc----cccccEEEEe
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----DLNKEIFYVP 519 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~----~~~~~i~~v~ 519 (1338)
.|+++|+++.|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+. ..+++++|||
T Consensus 2 ~L~i~~l~~~~~~-~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~ 80 (353)
T PRK10851 2 SIEIANIKKSFGR-TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVF 80 (353)
T ss_pred EEEEEEEEEEeCC-eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEe
Confidence 3789999999964 6799999999999999999999999999999999999999999999999651 2246799999
Q ss_pred cCCCCCC-CCHHHHhcCCCCCC----cccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000711 520 QRPYTAV-GTLRDQLIYPLTSD----QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1338)
Q Consensus 520 Q~~~l~~-~tl~eni~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1338)
|++.+++ .|++||+.|+.... .......++++.++++.+++.++.++.| .+||||||||++|||||+
T Consensus 81 Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~--------~~LSgGq~QRvalArAL~ 152 (353)
T PRK10851 81 QHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP--------AQLSGGQKQRVALARALA 152 (353)
T ss_pred cCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh--------hhCCHHHHHHHHHHHHHh
Confidence 9998876 59999999975321 0001112457788999999999888877 689999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 595 HKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 595 ~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
.+|+++|||||||+||+.+++.+.+.+++ .|+|+|+|||+++.+ ..+|+|++|+++
T Consensus 153 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G 213 (353)
T PRK10851 153 VEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQG 213 (353)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999998887754 389999999999975 579999999863
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=331.20 Aligned_cols=192 Identities=22% Similarity=0.271 Sum_probs=167.8
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc----cccccEEEEec
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----DLNKEIFYVPQ 520 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~----~~~~~i~~v~Q 520 (1338)
++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. ..++.++|+||
T Consensus 1 l~~~~l~~~~~-~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (208)
T cd03268 1 LKTNDLTKTYG-KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIE 79 (208)
T ss_pred CEEEEEEEEEC-CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecC
Confidence 46899999985 46899999999999999999999999999999999999999999999998651 23567999999
Q ss_pred CCCCC-CCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCE
Q 000711 521 RPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1338)
Q Consensus 521 ~~~l~-~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~i 599 (1338)
++.++ ..|++||+.++.... ..+++++.++++.+++.+..++.+ ..||||||||++||||++.+|++
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al~~~p~l 147 (208)
T cd03268 80 APGFYPNLTARENLRLLARLL----GIRKKRIDEVLDVVGLKDSAKKKV--------KGFSLGMKQRLGIALALLGNPDL 147 (208)
T ss_pred CCccCccCcHHHHHHHHHHhc----CCcHHHHHHHHHHcCCHHHHhhhH--------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 99876 579999998753211 124567888999999988877755 68999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 600 AILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 600 llLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
+||||||++||+.+.+.+++.+++ .|+|+|++||+++.+. .+|++++|++
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~ 201 (208)
T cd03268 148 LILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINK 201 (208)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEEC
Confidence 999999999999999999988764 4899999999999875 6999999986
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=336.04 Aligned_cols=197 Identities=23% Similarity=0.237 Sum_probs=166.8
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc-----cccccEEEEe
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-----DLNKEIFYVP 519 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~-----~~~~~i~~v~ 519 (1338)
|+++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.++|+|
T Consensus 1 i~~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (220)
T cd03265 1 IEVENLVKKYG-DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVF 79 (220)
T ss_pred CEEEEEEEEEC-CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEec
Confidence 47899999985 46899999999999999999999999999999999999999999999998541 2346799999
Q ss_pred cCCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCC
Q 000711 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1338)
Q Consensus 520 Q~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ 598 (1338)
|++.++. .|++||+.++...........++++.++++.+++++..++.+ .+||||||||++||||++.+|+
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qr~~la~al~~~p~ 151 (220)
T cd03265 80 QDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLV--------KTYSGGMRRRLEIARSLVHRPE 151 (220)
T ss_pred CCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh--------hhCCHHHHHHHHHHHHHhcCCC
Confidence 9998776 499999987432110001112456788999999998877765 6899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHh-hcceEEEccCC
Q 000711 599 FAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 599 illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
++||||||++||+.+.+.+++.+++ .|+|+|++||+++.+. .+|++++|+++
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G 208 (220)
T cd03265 152 VLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHG 208 (220)
T ss_pred EEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999888754 3889999999999875 69999999863
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=357.35 Aligned_cols=197 Identities=21% Similarity=0.339 Sum_probs=169.3
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc----cccccEEEEe
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----DLNKEIFYVP 519 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~----~~~~~i~~v~ 519 (1338)
.++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. ..++.++|||
T Consensus 3 ~l~i~~l~~~~~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~ 81 (369)
T PRK11000 3 SVTLRNVTKAYG-DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVF 81 (369)
T ss_pred EEEEEEEEEEeC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEe
Confidence 489999999996 46799999999999999999999999999999999999999999999998641 1245799999
Q ss_pred cCCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCC
Q 000711 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1338)
Q Consensus 520 Q~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ 598 (1338)
|++.++. .|++||+.|+...........++++.++++.+++.++.++.+ .+||||||||++|||||+.+|+
T Consensus 82 Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~--------~~LSgGq~QRvaLAraL~~~P~ 153 (369)
T PRK11000 82 QSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP--------KALSGGQRQRVAIGRTLVAEPS 153 (369)
T ss_pred CCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh--------hhCCHHHHHHHHHHHHHhcCCC
Confidence 9998876 599999998753211111112356788999999998888876 6899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhH-hhcceEEEccC
Q 000711 599 FAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1338)
Q Consensus 599 illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~-~~~d~i~~l~~ 649 (1338)
++|||||||+||+.+++.+.+.+++ .|+|+|+|||+++.+ ..||++++|++
T Consensus 154 lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~ 209 (369)
T PRK11000 154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDA 209 (369)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999998887754 389999999999876 57999999986
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=346.15 Aligned_cols=200 Identities=22% Similarity=0.311 Sum_probs=170.7
Q ss_pred CcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc--------ccccc
Q 000711 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------DLNKE 514 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~--------~~~~~ 514 (1338)
..|+++||++.|++++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 3699999999997567899999999999999999999999999999999999999999999999642 23467
Q ss_pred EEEEecCC--CCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHH
Q 000711 515 IFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1338)
Q Consensus 515 i~~v~Q~~--~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARa 592 (1338)
++|+||+| .++..|++||+.++............+++.++++.+++.++.++.+ .+||||||||++||||
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--------~~LS~G~~qrl~lara 155 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPT--------HCLSFGQKKRVAIAGV 155 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCc--------ccCCHHHHHHHHHHHH
Confidence 99999998 5678899999987532111001112345788899999988877755 6899999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHh-hcceEEEccCC
Q 000711 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 593 l~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
|+.+|+++||||||++||+.+...+.+.+++ .|+|+|++||+++.+. .||++++|+++
T Consensus 156 L~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G 218 (283)
T PRK13636 156 LVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEG 218 (283)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999998887754 3899999999999886 79999999863
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=333.32 Aligned_cols=195 Identities=25% Similarity=0.326 Sum_probs=166.1
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc-----cccccEEEEe
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-----DLNKEIFYVP 519 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~-----~~~~~i~~v~ 519 (1338)
|+++|+++.|++ +++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.++|+|
T Consensus 1 i~~~~~~~~~~~-~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 78 (211)
T cd03264 1 LQLENLTKRYGK-KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP 78 (211)
T ss_pred CEEEEEEEEECC-EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEec
Confidence 478999999854 58999999999999 9999999999999999999999999999999998651 2356799999
Q ss_pred cCCCCCCC-CHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCC
Q 000711 520 QRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1338)
Q Consensus 520 Q~~~l~~~-tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ 598 (1338)
|+|.++.. |++||+.++............+++.++++.+++.+..++.+ .+||||||||++||||++++|+
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al~~~p~ 150 (211)
T cd03264 79 QEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKI--------GSLSGGMRRRVGIAQALVGDPS 150 (211)
T ss_pred CCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCch--------hhCCHHHHHHHHHHHHHhcCCC
Confidence 99998875 99999986421110000112356788999999988777655 6899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHcc--CCeEEEEecChhhHh-hcceEEEccC
Q 000711 599 FAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 599 illLDEpts~LD~~~~~~i~~~l~~~--~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
++||||||++||+.+.+.+.+.+++. +.|+|++||+++.+. .+|++++|++
T Consensus 151 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~ 204 (211)
T cd03264 151 ILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNK 204 (211)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999988753 689999999999885 7999999986
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-37 Score=319.68 Aligned_cols=198 Identities=24% Similarity=0.271 Sum_probs=168.5
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEEEE
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYV 1177 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~~V 1177 (1338)
|+|+||++.|. .+.+++|+||+|++||.+.++|||||||||+++.+.|+++|++|+|.|||.||+++ ..+|++||||
T Consensus 2 I~~~nvsk~y~-~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 2 IEFENVSKRYG-NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred ceeeeeehhcC-CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhh
Confidence 79999999985 67799999999999999999999999999999999999999999999999999997 4577889999
Q ss_pred cCCCCCCC-CCHHHHhcC-CCch--HHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchh--hhhhhcccCcccCc
Q 000711 1178 PQRPYTCL-GTLRDQIIY-PLSR--EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSY--LLEREEVGWDANLN 1251 (1338)
Q Consensus 1178 pQdP~LF~-GTIReNL~~-p~~~--~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~--~i~~~~~Gldt~~~ 1251 (1338)
-|.--||+ -|+.+||.. |.-. +.+ ..+..+.++++.++|.. +.+|-
T Consensus 81 iQqigLFPh~Tv~eNIa~VP~L~~w~k~-------------------~i~~r~~ELl~lvgL~p~~~~~Ry--------- 132 (309)
T COG1125 81 IQQIGLFPHLTVAENIATVPKLLGWDKE-------------------RIKKRADELLDLVGLDPSEYADRY--------- 132 (309)
T ss_pred hhhcccCCCccHHHHHHhhhhhcCCCHH-------------------HHHHHHHHHHHHhCCCHHHHhhcC---------
Confidence 99999996 699999975 4210 111 11344567777777742 44443
Q ss_pred ccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHH----HhcCCeEEEeccCC-CCcccccceEEEec
Q 000711 1252 WEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLA----KDMGITFVTSSQRP-ALIPFHSLELRLID 1326 (1338)
Q Consensus 1252 ~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~----~~~~~TvI~IAHRl-~~i~~~d~~l~l~~ 1326 (1338)
...|||||+||+.+||||..+|+|+++|||-+|||+-+.+.+|+.+ ++.++|+|.|+|.. +-++..|++.++.+
T Consensus 133 -P~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~ 211 (309)
T COG1125 133 -PHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDA 211 (309)
T ss_pred -chhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecC
Confidence 3579999999999999999999999999999999999998888754 24699999999999 58999999999965
Q ss_pred C
Q 000711 1327 G 1327 (1338)
Q Consensus 1327 g 1327 (1338)
|
T Consensus 212 G 212 (309)
T COG1125 212 G 212 (309)
T ss_pred C
Confidence 4
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=331.04 Aligned_cols=201 Identities=30% Similarity=0.501 Sum_probs=173.8
Q ss_pred cEEEEeEEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc------cccccEE
Q 000711 444 YIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------DLNKEIF 516 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~~~~~i~ 516 (1338)
.++++|+++.|+++ +++++|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|.+. ..++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 48899999999753 5799999999999999999999999999999999999999999999998641 2345799
Q ss_pred EEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccc---cCCCCCChhHHHHHHHHHHH
Q 000711 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLF 593 (1338)
Q Consensus 517 ~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal 593 (1338)
|+||+++++..|+.||+.++... ....++.++++.+++.+..++.|.+..+ ....+||||||||++||||+
T Consensus 82 ~~~q~~~~~~~tv~e~l~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al 155 (220)
T cd03245 82 YVPQDVTLFYGTLRDNITLGAPL------ADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARAL 155 (220)
T ss_pred EeCCCCccccchHHHHhhcCCCC------CCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHH
Confidence 99999998888999999876421 2345677889999999988887643322 23568999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHcc--CCeEEEEecChhhHhhcceEEEccCC
Q 000711 594 YHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 594 ~~~p~illLDEpts~LD~~~~~~i~~~l~~~--~~t~i~itH~~~~~~~~d~i~~l~~~ 650 (1338)
+.+|+++||||||++||+.+...+++.+++. ++|+|++||+++.+..+|++++++++
T Consensus 156 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g 214 (220)
T cd03245 156 LNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSG 214 (220)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999988753 47999999999988899999999863
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=341.67 Aligned_cols=210 Identities=23% Similarity=0.254 Sum_probs=177.9
Q ss_pred CCCceEEeeeEEeCCCc-cccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc--CCcc
Q 000711 1096 YQDSISFSKLDIITPSQ-KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGC 1172 (1338)
Q Consensus 1096 ~~g~I~f~nV~f~yp~~-~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~--~lr~ 1172 (1338)
..|.|+++||+++|++. +++|+|+||+|+|||.+||+|+||||||||+++|.|+++|++|+|.+||.++.... ..+.
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 36889999999999763 57999999999999999999999999999999999999999999999999887652 3456
Q ss_pred cEEEEcCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC-c
Q 000711 1173 GIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-N 1251 (1338)
Q Consensus 1173 ~i~~VpQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~ 1251 (1338)
+++||||+|.+|++|+++|+.+.... .+..+.++++.+++...++..|.|+++.. .
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~-----------------------~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~ 152 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKC-----------------------TDDRLWEALEIAQLKNMVKSLPGGLDAVVTE 152 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCC-----------------------CHHHHHHHHHHhCcHHHHhhcccccCcEecc
Confidence 79999999999999999999632110 11223344455566666777777888876 3
Q ss_pred ccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1252 WEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1252 ~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
++.+||+|||||++||||++++|++|||||||++||+++++.+.+.+++ .++|+|+++|+++.+..+|+++.|.+|+
T Consensus 153 ~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~ 231 (257)
T cd03288 153 GGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGI 231 (257)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCE
Confidence 6789999999999999999999999999999999999999888777654 4899999999999888899999997554
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=355.51 Aligned_cols=198 Identities=23% Similarity=0.391 Sum_probs=170.7
Q ss_pred CcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC----ccccccEEEE
Q 000711 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYV 518 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~----~~~~~~i~~v 518 (1338)
..++++|+++.|+ +.++|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+ ...++.++||
T Consensus 18 ~~l~l~~v~~~~~-~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 96 (377)
T PRK11607 18 PLLEIRNLTKSFD-GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMM 96 (377)
T ss_pred ceEEEEeEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 4699999999985 4679999999999999999999999999999999999999999999999864 1235679999
Q ss_pred ecCCCCCCC-CHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCC
Q 000711 519 PQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1338)
Q Consensus 519 ~Q~~~l~~~-tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p 597 (1338)
||++.+|.. |+.||+.|+............+++.++++.+++.++.++.| .+||||||||++|||||+.+|
T Consensus 97 fQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~--------~~LSgGq~QRVaLARAL~~~P 168 (377)
T PRK11607 97 FQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP--------HQLSGGQRQRVALARSLAKRP 168 (377)
T ss_pred eCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh--------hhCCHHHHHHHHHHHHHhcCC
Confidence 999988865 99999999754211111112456788999999999988887 689999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHH----ccCCeEEEEecChhhH-hhcceEEEccC
Q 000711 598 KFAILDECTSAVTTDMEERFCAKVR----AMGTSCITISHRPALV-AFHDVVLSLDG 649 (1338)
Q Consensus 598 ~illLDEpts~LD~~~~~~i~~~l~----~~~~t~i~itH~~~~~-~~~d~i~~l~~ 649 (1338)
++|+||||||+||...++.+.+.++ +.|.|+|+|||+++.+ ..+|++++|++
T Consensus 169 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~ 225 (377)
T PRK11607 169 KLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNR 225 (377)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeC
Confidence 9999999999999999988876543 3589999999999975 67999999986
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=344.27 Aligned_cols=198 Identities=25% Similarity=0.327 Sum_probs=169.5
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc-------cccccEEE
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------DLNKEIFY 517 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~-------~~~~~i~~ 517 (1338)
++++|+++.|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.++|
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (274)
T PRK13644 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGI 81 (274)
T ss_pred EEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEE
Confidence 78999999997556799999999999999999999999999999999999999999999998641 23457999
Q ss_pred EecCCC--CCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHcc
Q 000711 518 VPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1338)
Q Consensus 518 v~Q~~~--l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~ 595 (1338)
+||+|. ++..|+.||+.++...........++++.++++.+++++..++.+ ..||||||||++|||||++
T Consensus 82 v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~~qrv~laral~~ 153 (274)
T PRK13644 82 VFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSP--------KTLSGGQGQCVALAGILTM 153 (274)
T ss_pred EEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCc--------ccCCHHHHHHHHHHHHHHc
Confidence 999985 567899999987632110001112346778899999998888765 6899999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHhhcceEEEccCC
Q 000711 596 KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 596 ~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~~~d~i~~l~~~ 650 (1338)
+|+++||||||++||+.+...+++.+++ .|+|+|++||+++.+..||++++++++
T Consensus 154 ~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G 211 (274)
T PRK13644 154 EPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRG 211 (274)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECC
Confidence 9999999999999999999999988754 489999999999999899999999863
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=344.36 Aligned_cols=199 Identities=27% Similarity=0.372 Sum_probs=171.4
Q ss_pred cEEEEeEEEEcCC-CCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc------cccccEE
Q 000711 444 YIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------DLNKEIF 516 (1338)
Q Consensus 444 ~i~~~~v~~~~~~-~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~~~~~i~ 516 (1338)
.++++||++.|++ .+++++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. .+++.++
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 5899999999974 46799999999999999999999999999999999999999999999999651 2346799
Q ss_pred EEecCC--CCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000711 517 YVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1338)
Q Consensus 517 ~v~Q~~--~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1338)
|+||+| .++..|++|||.++...........++++.++++.++|+++.++.+ ..||||||||++|||||+
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--------~~LS~G~~qrv~laral~ 156 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP--------HRLSGGQKQRVAIAGVLA 156 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc--------ccCCHHHHHHHHHHHHHH
Confidence 999998 4667899999988632211101112356788999999999888877 689999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHhhcceEEEccCC
Q 000711 595 HKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 595 ~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~~~d~i~~l~~~ 650 (1338)
.+|+++||||||++||+.+...+++.+++ .|+|+|++||+++.+..||++++++++
T Consensus 157 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G 216 (279)
T PRK13635 157 LQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKG 216 (279)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECC
Confidence 99999999999999999999999998864 289999999999998889999999863
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=347.51 Aligned_cols=197 Identities=23% Similarity=0.284 Sum_probs=166.3
Q ss_pred EEEEeEEEEcCCC----CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc----------c
Q 000711 445 IEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----------D 510 (1338)
Q Consensus 445 i~~~~v~~~~~~~----~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~----------~ 510 (1338)
++++||++.|++. .++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. .
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 7899999999742 5799999999999999999999999999999999999999999999999641 1
Q ss_pred ccccEEEEecCC--CCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCc-hHHhcCCCCccccCCCCCChhHHHHH
Q 000711 511 LNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRL 587 (1338)
Q Consensus 511 ~~~~i~~v~Q~~--~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~g~~LSgGqkQRl 587 (1338)
.++.++||||+| .++..|++||+.++............+++.++++.++|. ++.++.+ .+||||||||+
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--------~~LSgGq~qrv 154 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSP--------FELSGGQMRRV 154 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCc--------ccCCHHHHHHH
Confidence 245799999998 577889999998863211100011124577889999996 5556655 68999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhH-hhcceEEEccC
Q 000711 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1338)
Q Consensus 588 alARal~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~-~~~d~i~~l~~ 649 (1338)
+|||||+.+|+++||||||++||+.+...+.+.+++ .|.|+|++||+++.+ ..||+|++|++
T Consensus 155 ~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~ 221 (290)
T PRK13634 155 AIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHK 221 (290)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999888754 389999999999987 57999999986
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=316.72 Aligned_cols=166 Identities=53% Similarity=0.985 Sum_probs=151.7
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccccCCcccEEEEcC
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 1179 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~~lr~~i~~VpQ 1179 (1338)
|+++||+++|++.+++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+++. ++++|+||
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~---------~~i~~~~q 71 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG---------EDLLFLPQ 71 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC---------ceEEEECC
Confidence 578999999986677999999999999999999999999999999999999999999999874 47999999
Q ss_pred CCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCCChh
Q 000711 1180 RPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLG 1259 (1338)
Q Consensus 1180 dP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSgG 1259 (1338)
+|.++++|++||+.++ +...||||
T Consensus 72 ~~~~~~~tv~~nl~~~--------------------------------------------------------~~~~LS~G 95 (166)
T cd03223 72 RPYLPLGTLREQLIYP--------------------------------------------------------WDDVLSGG 95 (166)
T ss_pred CCccccccHHHHhhcc--------------------------------------------------------CCCCCCHH
Confidence 9999999999998632 01248999
Q ss_pred HHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHhcCCeEEEeccCCCCcccccceEEEecCCCCe
Q 000711 1260 EQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNW 1331 (1338)
Q Consensus 1260 QrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~~~~TvI~IAHRl~~i~~~d~~l~l~~g~g~~ 1331 (1338)
||||++||||++++|+++||||||++||.++.+.+.+.+++.++|+|+|+|+++...++|+++.+ +.+|.|
T Consensus 96 ~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~~~~d~i~~l-~~~~~~ 166 (166)
T cd03223 96 EQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLWKFHDRVLDL-DGEGGW 166 (166)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhHHhhCCEEEEE-cCCCCC
Confidence 99999999999999999999999999999999999888776689999999999988999999999 677877
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=327.92 Aligned_cols=195 Identities=25% Similarity=0.355 Sum_probs=163.3
Q ss_pred eEEeeeEEeCCCc----cccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccccCCcccEE
Q 000711 1100 ISFSKLDIITPSQ----KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIF 1175 (1338)
Q Consensus 1100 I~f~nV~f~yp~~----~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~~lr~~i~ 1175 (1338)
|+++||++.|++. +++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+|| +|+
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-----------~i~ 69 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-----------SIA 69 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-----------EEE
Confidence 5799999999764 4799999999999999999999999999999999999999999999998 599
Q ss_pred EEcCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCc-ccC
Q 000711 1176 YVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLN-WED 1254 (1338)
Q Consensus 1176 ~VpQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~-~g~ 1254 (1338)
||||+|.+|++|++||+.++....+ +...++++.+++...+...|.|+++..+ ...
T Consensus 70 ~~~q~~~l~~~t~~enl~~~~~~~~-----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 126 (204)
T cd03250 70 YVSQEPWIQNGTIRENILFGKPFDE-----------------------ERYEKVIKACALEPDLEILPDGDLTEIGEKGI 126 (204)
T ss_pred EEecCchhccCcHHHHhccCCCcCH-----------------------HHHHHHHHHcCcHHHHHhccCcccceecCCCC
Confidence 9999999999999999987532111 1122334445555556666778887653 457
Q ss_pred CCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHH-HHH---hcCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1255 ILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYR-LAK---DMGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1255 ~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~-~~~---~~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
.||+|||||++||||++.+|+++||||||++||.++.+.+.+ +++ ..++|+|+|+|+++.+..+|+++.|.+|.
T Consensus 127 ~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 127 NLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 899999999999999999999999999999999999876654 333 23799999999999888899999997763
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=348.70 Aligned_cols=199 Identities=24% Similarity=0.291 Sum_probs=169.2
Q ss_pred CcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC-----ccccccEEE
Q 000711 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFY 517 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~-----~~~~~~i~~ 517 (1338)
..++++||++.|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ...++++||
T Consensus 6 ~~i~i~~l~k~~~-~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~ 84 (306)
T PRK13537 6 APIDFRNVEKRYG-DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84 (306)
T ss_pred ceEEEEeEEEEEC-CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEE
Confidence 4699999999996 4689999999999999999999999999999999999999999999999975 124578999
Q ss_pred EecCCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccC
Q 000711 518 VPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1338)
Q Consensus 518 v~Q~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~ 596 (1338)
|||++.++. .|++||+.|.............+++.++++.+++.+..++.+ .+||||||||++|||||+++
T Consensus 85 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~la~aL~~~ 156 (306)
T PRK13537 85 VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKV--------GELSGGMKRRLTLARALVND 156 (306)
T ss_pred EeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCch--------hhCCHHHHHHHHHHHHHhCC
Confidence 999998875 699999986322111000111345678899999988777654 68999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHh-hcceEEEccCC
Q 000711 597 PKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 597 p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
|+++||||||++||+.+.+.+++.+++ .|+|+|++||+++.+. .||+|++|+++
T Consensus 157 P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G 214 (306)
T PRK13537 157 PDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEG 214 (306)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999998765 4899999999999885 69999999873
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=336.90 Aligned_cols=197 Identities=29% Similarity=0.394 Sum_probs=167.8
Q ss_pred EEEEeEEEEcCCC---CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc---------ccc
Q 000711 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DLN 512 (1338)
Q Consensus 445 i~~~~v~~~~~~~---~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~---------~~~ 512 (1338)
|+++|+++.|++. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 7899999999653 2899999999999999999999999999999999999999999999998651 124
Q ss_pred ccEEEEecCCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHH
Q 000711 513 KEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1338)
Q Consensus 513 ~~i~~v~Q~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalAR 591 (1338)
+.++|+||+|.++. .|++||+.++............+++.++++.+++.+..++.+ .+||||||||++|||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la~ 153 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYP--------AQLSGGQKQRVGIAR 153 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcCh--------hhCCHHHHHHHHHHH
Confidence 67999999999886 699999987532111001112456788999999988877765 689999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 592 al~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
|++++|+++||||||++||+.+...+.+.+++ .|+|+|++||+++.+. .+|++++|++
T Consensus 154 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~ 216 (233)
T cd03258 154 ALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEK 216 (233)
T ss_pred HHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999988764 3899999999999875 6999999976
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=334.58 Aligned_cols=200 Identities=30% Similarity=0.458 Sum_probs=173.3
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC------ccccccEEEE
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYV 518 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v 518 (1338)
++++|+++.|++++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 4689999999766789999999999999999999999999999999999999999999999864 1234579999
Q ss_pred ecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCcc---ccCCCCCChhHHHHHHHHHHHcc
Q 000711 519 PQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKE---INWGDELSLGEQQRLGMARLFYH 595 (1338)
Q Consensus 519 ~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~---~~~g~~LSgGqkQRlalARal~~ 595 (1338)
||+|+++++|++||+.++... ..+.++.+.++.+++.+.++.++.+.. ..+..+||||||||++|||||++
T Consensus 81 ~q~~~~~~~tv~~nl~~~~~~------~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~ 154 (236)
T cd03253 81 PQDTVLFNDTIGYNIRYGRPD------ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILK 154 (236)
T ss_pred CCCChhhcchHHHHHhhcCCC------CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 999999999999999886432 234556777888899888887764322 23567999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHcc--CCeEEEEecChhhHhhcceEEEccCC
Q 000711 596 KPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 596 ~p~illLDEpts~LD~~~~~~i~~~l~~~--~~t~i~itH~~~~~~~~d~i~~l~~~ 650 (1338)
+|+++||||||++||+.+.+.+.+.+++. |+|+|++||+++.+..||++++|+++
T Consensus 155 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g 211 (236)
T cd03253 155 NPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDG 211 (236)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECC
Confidence 99999999999999999999999888642 88999999999999889999999863
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=343.43 Aligned_cols=200 Identities=26% Similarity=0.377 Sum_probs=170.7
Q ss_pred CcEEEEeEEEEcCC-CCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc------cccccE
Q 000711 443 NYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------DLNKEI 515 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~-~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~~~~~i 515 (1338)
..++++|+++.|++ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.+
T Consensus 6 ~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred eEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 46999999999973 56899999999999999999999999999999999999999999999998651 245679
Q ss_pred EEEecCC--CCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHH
Q 000711 516 FYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1338)
Q Consensus 516 ~~v~Q~~--~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal 593 (1338)
+|+||+| .++..|++||+.++............+.+.++++.+++.++.++.+ .+||||||||++|||||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~laral 157 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEP--------QNLSGGQKQRVAIASVL 157 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCc--------ccCCHHHHHHHHHHHHH
Confidence 9999998 4567899999987532110000112235678899999998888866 68999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHc---c-CCeEEEEecChhhHhhcceEEEccCC
Q 000711 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 594 ~~~p~illLDEpts~LD~~~~~~i~~~l~~---~-~~t~i~itH~~~~~~~~d~i~~l~~~ 650 (1338)
+.+|+++||||||++||+.+.+.+++.+++ . ++|+|++||+++.+..||++++|+++
T Consensus 158 ~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G 218 (271)
T PRK13632 158 ALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEG 218 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECC
Confidence 999999999999999999999999998865 2 58999999999988899999999863
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=346.24 Aligned_cols=198 Identities=20% Similarity=0.302 Sum_probs=167.3
Q ss_pred EEEEeEEEEcCCC----CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc----------c
Q 000711 445 IEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----------D 510 (1338)
Q Consensus 445 i~~~~v~~~~~~~----~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~----------~ 510 (1338)
++++||++.|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 7899999999642 4699999999999999999999999999999999999999999999998641 2
Q ss_pred ccccEEEEecCC--CCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCc-hHHhcCCCCccccCCCCCChhHHHHH
Q 000711 511 LNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRL 587 (1338)
Q Consensus 511 ~~~~i~~v~Q~~--~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~g~~LSgGqkQRl 587 (1338)
+++.|+||||+| .++..|+.||+.++...........++++.++++.+|+. +..++.+ .+||||||||+
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--------~~LSgGq~qrv 154 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSP--------FQMSGGQMRKI 154 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCc--------ccCCHHHHHHH
Confidence 456899999997 577789999999863211100111234567889999996 5666655 68999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 588 alARal~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
+|||||+.+|+++||||||++||+.+...+.+.+++ .|+|+|+|||+++.+ ..+|++++|+++
T Consensus 155 ~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G 222 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEG 222 (286)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999888764 389999999999987 579999999863
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=329.50 Aligned_cols=195 Identities=23% Similarity=0.323 Sum_probs=165.4
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc----cccccEEEEec
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----DLNKEIFYVPQ 520 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~----~~~~~i~~v~Q 520 (1338)
|+++|+++.|++ +. .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++|+||
T Consensus 1 i~~~~l~~~~~~-~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 77 (211)
T cd03298 1 VRLDKIRFSYGE-QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQ 77 (211)
T ss_pred CEEEeEEEEeCC-Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEec
Confidence 468999999864 33 399999999999999999999999999999999999999999998641 12457999999
Q ss_pred CCCCCCC-CHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCE
Q 000711 521 RPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1338)
Q Consensus 521 ~~~l~~~-tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~i 599 (1338)
+|.++.+ |++||+.++...........++++.++++.+++.+..++.+ .+||||||||++||||++.+|++
T Consensus 78 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~ia~al~~~p~l 149 (211)
T cd03298 78 ENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP--------GELSGGERQRVALARVLVRDKPV 149 (211)
T ss_pred ccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc--------ccCCHHHHHHHHHHHHHhcCCCE
Confidence 9998875 99999987643110011123457889999999998888766 68999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHh-hcceEEEccCC
Q 000711 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 600 llLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
+||||||++||+.+++.+.+.+++ .++|+|++||+++.+. .+|++++|+++
T Consensus 150 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G 205 (211)
T cd03298 150 LLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNG 205 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECC
Confidence 999999999999999999988764 3899999999999875 69999999863
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=337.83 Aligned_cols=207 Identities=19% Similarity=0.262 Sum_probs=169.4
Q ss_pred eEEeeeEEeCCC-ccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc--CCcccEEE
Q 000711 1100 ISFSKLDIITPS-QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFY 1176 (1338)
Q Consensus 1100 I~f~nV~f~yp~-~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~--~lr~~i~~ 1176 (1338)
|+++||++.|++ .+++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.++|.++.... ..+++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 579999999975 467999999999999999999999999999999999999999999999999886542 33557999
Q ss_pred EcCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCc-ccCC
Q 000711 1177 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLN-WEDI 1255 (1338)
Q Consensus 1177 VpQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~-~g~~ 1255 (1338)
+||+|.+|+.|+++||.++..... ...+.+.++..++.+.++..|.|+++..+ ...+
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~----------------------~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 138 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMS----------------------MERVIEAAKLAGAHDFISELPEGYDTIVGEQGAG 138 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCC----------------------HHHHHHHHHHcCcHHHHHhCcccccchhhcCCCc
Confidence 999999999999999976432100 01112222334444455555566666542 4578
Q ss_pred CChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1256 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1256 LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
||||||||++||||++++|+++||||||++||..+.+.+.+.+++ .|+|+|+++|+++.+..+|+++.|.+|+
T Consensus 139 LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~ 213 (237)
T cd03252 139 LSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGR 213 (237)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999988877654 4899999999999888899999997664
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=353.83 Aligned_cols=186 Identities=28% Similarity=0.329 Sum_probs=161.1
Q ss_pred CCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc------cc----cccEEEEecCCCCC
Q 000711 456 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------DL----NKEIFYVPQRPYTA 525 (1338)
Q Consensus 456 ~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~~----~~~i~~v~Q~~~l~ 525 (1338)
+++.+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. ++ +++++||||++++|
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~ 83 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC
Confidence 356799999999999999999999999999999999999999999999999651 12 56899999999998
Q ss_pred C-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEEEec
Q 000711 526 V-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604 (1338)
Q Consensus 526 ~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~illLDE 604 (1338)
+ .|++|||.++............+++.++++.++|+++.++.| .+||||||||++|||||+++|+++||||
T Consensus 84 ~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p--------~~LSGGq~QRV~lARAL~~~p~iLLlDE 155 (363)
T TIGR01186 84 PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP--------DELSGGMQQRVGLARALAAEPDILLMDE 155 (363)
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 7 599999998643211111123457789999999999988887 6899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhH-hhcceEEEccC
Q 000711 605 CTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1338)
Q Consensus 605 pts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~-~~~d~i~~l~~ 649 (1338)
|||+||+.+.+.+++.+.+ .|+|+|+|||+++.+ +.+|+|++|++
T Consensus 156 P~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~ 205 (363)
T TIGR01186 156 AFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKA 205 (363)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 9999999999999988753 389999999999875 67999999986
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=336.53 Aligned_cols=196 Identities=26% Similarity=0.362 Sum_probs=166.0
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc-----cccccEEEEe
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-----DLNKEIFYVP 519 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~-----~~~~~i~~v~ 519 (1338)
++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ...+.++|+|
T Consensus 2 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~ 80 (236)
T TIGR03864 2 LEVAGLSFAYG-ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVF 80 (236)
T ss_pred EEEEeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeC
Confidence 68999999986 46899999999999999999999999999999999999999999999998641 1235799999
Q ss_pred cCCCC-CCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCC
Q 000711 520 QRPYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1338)
Q Consensus 520 Q~~~l-~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ 598 (1338)
|++.+ +..|++||+.++............+++.++++.+++.+..++.+ .+||||||||++||||++++|+
T Consensus 81 q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~~qrl~laral~~~p~ 152 (236)
T TIGR03864 81 QQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKV--------RELNGGHRRRVEIARALLHRPA 152 (236)
T ss_pred CCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCCh--------hhCCHHHHHHHHHHHHHhcCCC
Confidence 99977 56799999987532111000112345778899999987766654 6899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHhhcceEEEccC
Q 000711 599 FAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDG 649 (1338)
Q Consensus 599 illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~~~d~i~~l~~ 649 (1338)
++||||||++||+.+.+.+++.+++ .|+|+|++||+++.+..+|++++|++
T Consensus 153 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~ 207 (236)
T TIGR03864 153 LLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHR 207 (236)
T ss_pred EEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeC
Confidence 9999999999999999999988754 37999999999998888999999986
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=331.68 Aligned_cols=196 Identities=27% Similarity=0.358 Sum_probs=167.1
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc--------cccccEE
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------DLNKEIF 516 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~--------~~~~~i~ 516 (1338)
++++||++.|++ +++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++
T Consensus 1 l~~~~l~~~~~~-~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 1 IEIKNLHKSFGD-FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred CEEEEEEEEECC-eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence 468999999964 6899999999999999999999999999999999999999999999998641 1346799
Q ss_pred EEecCCCCCC-CCHHHHhcCCCCC-CcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000711 517 YVPQRPYTAV-GTLRDQLIYPLTS-DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1338)
Q Consensus 517 ~v~Q~~~l~~-~tl~eni~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1338)
|+||+|.++. .|++||+.++... ........++++.++++.+++++..++.+ .+||||||||++||||++
T Consensus 80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al~ 151 (213)
T cd03262 80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYP--------AQLSGGQQQRVAIARALA 151 (213)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCc--------cccCHHHHHHHHHHHHHh
Confidence 9999998876 6999999875321 00001112346778899999988877766 689999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 595 ~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
++|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+. .+|++++|++
T Consensus 152 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~ 210 (213)
T cd03262 152 MNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDD 210 (213)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 99999999999999999999999988864 4899999999999885 6999999976
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=353.89 Aligned_cols=198 Identities=23% Similarity=0.321 Sum_probs=171.7
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC------ccccccEEE
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~ 517 (1338)
.++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ .+++++++|
T Consensus 3 ~L~~~nls~~y~-~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 3 MIDVSDLSVEFG-DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred eEEEeeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 589999999996 4789999999999999999999999999999999999999999999999964 234578999
Q ss_pred EecCCCC-CCCCHHHHhcCCCCCCc-cc---CCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHH
Q 000711 518 VPQRPYT-AVGTLRDQLIYPLTSDQ-EV---EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1338)
Q Consensus 518 v~Q~~~l-~~~tl~eni~~~~~~~~-~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARa 592 (1338)
|+|++.+ +..|++||+.++..... .. ...+.+++.++++.+++.++.++.+ .+||||||||++||||
T Consensus 82 v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~--------~~LSgGerQRv~IArA 153 (402)
T PRK09536 82 VPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV--------TSLSGGERQRVLLARA 153 (402)
T ss_pred EccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh--------hhCCHHHHHHHHHHHH
Confidence 9999987 57799999988643110 00 1123457889999999998888765 6899999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 593 l~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
|+++|+++||||||++||+.++..+++.+++ .|+|+|++||+++.+ +.||++++|+++
T Consensus 154 L~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G 215 (402)
T PRK09536 154 LAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADG 215 (402)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999998888764 488999999999998 579999999863
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=337.71 Aligned_cols=196 Identities=28% Similarity=0.407 Sum_probs=165.7
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc------c-ccccEEE
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------D-LNKEIFY 517 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~-~~~~i~~ 517 (1338)
++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. . .+..++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 1 LEVRGLTKRFG-GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred CeeeeeEEEEC-CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 46899999996 46799999999999999999999999999999999999999999999998641 1 1356999
Q ss_pred EecCCCCCCC-CHHHHhcCCCCCCccc----------CCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHH
Q 000711 518 VPQRPYTAVG-TLRDQLIYPLTSDQEV----------EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQR 586 (1338)
Q Consensus 518 v~Q~~~l~~~-tl~eni~~~~~~~~~~----------~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQR 586 (1338)
+||++.++.+ |++||+.++....... .....+++.++++.+++.+..++.+ .+||||||||
T Consensus 80 v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qr 151 (236)
T cd03219 80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA--------GELSYGQQRR 151 (236)
T ss_pred EecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh--------hhCCHHHHHH
Confidence 9999988775 9999998754211000 0112345778899999987776654 6899999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 587 lalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
++||||++.+|+++||||||++||+.+.+.+++.+++ .|+|+|++||+++.+. .||++++|++
T Consensus 152 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~ 218 (236)
T cd03219 152 LEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQ 218 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999998764 4899999999999875 6999999986
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=331.64 Aligned_cols=198 Identities=24% Similarity=0.380 Sum_probs=169.0
Q ss_pred CcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc------cccccEE
Q 000711 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------DLNKEIF 516 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~~~~~i~ 516 (1338)
..|+++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. ..++.++
T Consensus 6 ~~i~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 6 PLLQLQNVGYLAG-DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred ceEEEeccEEeeC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 4699999999986 46899999999999999999999999999999999999999999999998541 2346799
Q ss_pred EEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCc-hHHhcCCCCccccCCCCCChhHHHHHHHHHHHcc
Q 000711 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1338)
Q Consensus 517 ~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~ 595 (1338)
|+||+++++..|++||+.++..... ....++++.++++.+++. ...++.+ .+||||||||++|||||++
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRN--QQPDPAIFLDDLERFALPDTILTKNI--------AELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcC--CChHHHHHHHHHHHcCCChHHhcCCc--------ccCCHHHHHHHHHHHHHhc
Confidence 9999999998899999987432111 111245677899999995 4555544 6899999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHhhcceEEEccCCC
Q 000711 596 KPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGEG 651 (1338)
Q Consensus 596 ~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~~~d~i~~l~~~g 651 (1338)
+|+++||||||++||+.+.+.+.+.+++ .|.|+|++||+++.+..||++++|++++
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~ 214 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHA 214 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEeccc
Confidence 9999999999999999999999887764 3889999999999988999999997544
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=334.25 Aligned_cols=199 Identities=24% Similarity=0.290 Sum_probs=166.8
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCC-----CCCccEEEeCCCCc--------cc
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW-----PLVSGHIAKPGVGS--------DL 511 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~-----~~~~G~i~~~~~~~--------~~ 511 (1338)
|+++||++.|++ +++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|.+. .+
T Consensus 1 i~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 1 IELRDLNVYYGD-KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred CEEEEEEEEcCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 478999999964 68999999999999999999999999999999999999 99999999998641 13
Q ss_pred cccEEEEecCCCCCCCCHHHHhcCCCCCCcccC-CCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHH
Q 000711 512 NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1338)
Q Consensus 512 ~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalA 590 (1338)
+++++|+||++.++..|++||+.++........ ...++++.++++.+++.+..++.+. ..+||||||||++||
T Consensus 80 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~~LSgG~~qrv~la 153 (227)
T cd03260 80 RRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH------ALGLSGGQQQRLCLA 153 (227)
T ss_pred HhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC------cccCCHHHHHHHHHH
Confidence 457999999998888899999987642211000 0124567889999999877665420 268999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHcc--CCeEEEEecChhhHh-hcceEEEccCC
Q 000711 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 591 Ral~~~p~illLDEpts~LD~~~~~~i~~~l~~~--~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
|||+++|+++||||||++||+.+++.+.+.+++. .+|+|++||+++.+. .||++++|+++
T Consensus 154 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G 216 (227)
T cd03260 154 RALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNG 216 (227)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999988652 379999999999765 79999999863
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=335.78 Aligned_cols=210 Identities=23% Similarity=0.318 Sum_probs=175.5
Q ss_pred CceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEE
Q 000711 1098 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIF 1175 (1338)
Q Consensus 1098 g~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~ 1175 (1338)
|.|+++|+++.|++.+++++|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++... ...+.+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (229)
T cd03254 1 GEIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIG 80 (229)
T ss_pred CeEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEE
Confidence 4689999999997656799999999999999999999999999999999999999999999999988754 23456799
Q ss_pred EEcCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCc-ccC
Q 000711 1176 YVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLN-WED 1254 (1338)
Q Consensus 1176 ~VpQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~-~g~ 1254 (1338)
|+||+|.+|.+|+++|+.++.... .+..+.+.++.+++...+++.|.|+++..+ ...
T Consensus 81 ~~~q~~~~~~~tv~~~~~~~~~~~----------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 138 (229)
T cd03254 81 VVLQDTFLFSGTIMENIRLGRPNA----------------------TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGG 138 (229)
T ss_pred EecCCchhhhhHHHHHHhccCCCC----------------------CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCC
Confidence 999999999999999997642110 012233344555666666666777777653 457
Q ss_pred CCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCcccccceEEEecCCC
Q 000711 1255 ILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGEG 1329 (1338)
Q Consensus 1255 ~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i~~~d~~l~l~~g~g 1329 (1338)
.||+|||||++||||++++|++|||||||++||.++.+.+.+.++. .++|+|+|+|.++.+..+|+++.|.+|+-
T Consensus 139 ~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~ 215 (229)
T cd03254 139 NLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKI 215 (229)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeE
Confidence 8999999999999999999999999999999999999888776644 48999999999988888999999977763
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-36 Score=334.25 Aligned_cols=194 Identities=29% Similarity=0.365 Sum_probs=168.3
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC------ccccccEEE
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~ 517 (1338)
.++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 3 EIEFKEVSYSSF-GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred eEEEEeEEEEeC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 489999999986 4679999999999999999999999999999999999999999999999864 123567999
Q ss_pred EecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCc-hHHhcCCCCccccCCCCCChhHHHHHHHHHHHccC
Q 000711 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1338)
Q Consensus 518 v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~ 596 (1338)
+||+|.++..|++||+.++.... ....+++.++++.+++. ++.++.+ .+||||||||++||||++++
T Consensus 82 ~~q~~~~~~~tv~e~l~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 82 VFQQPHLFEGTVKDNIEYGPMLK----GEKNVDVEYYLSIVGLNKEYATRDV--------KNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EecCchhchhhHHHHHhcchhhc----CcHHHHHHHHHHHcCCCHHHhhCCc--------ccCCHHHHHHHHHHHHHhcC
Confidence 99999998899999998754221 11245678889999996 4566644 68999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHh-hcceEEEccCC
Q 000711 597 PKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 597 p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
|+++||||||++||+.+.+.+++.+++ .|+|+|++||+++.+. .||++++|+++
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G 208 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKG 208 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999888764 3899999999999875 69999999863
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=344.51 Aligned_cols=199 Identities=28% Similarity=0.371 Sum_probs=169.9
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC-----ccccccEEEE
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYV 518 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~-----~~~~~~i~~v 518 (1338)
.++++||++.|..++.+|+|+||+|++||+++++||||||||||+|+|+|+..|++|+|.++|.+ .+.++++||+
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~ 83 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYV 83 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEE
Confidence 47889999999646899999999999999999999999999999999999999999999999965 2356789999
Q ss_pred ecCCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCC
Q 000711 519 PQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1338)
Q Consensus 519 ~Q~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p 597 (1338)
||+|.++. .|++||+.|............++++.++++.++|.+..++.. ..||+|||||++||+||+++|
T Consensus 84 ~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~--------~~lS~G~kqrl~ia~aL~~~P 155 (293)
T COG1131 84 PQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKV--------RTLSGGMKQRLSIALALLHDP 155 (293)
T ss_pred ccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcch--------hhcCHHHHHHHHHHHHHhcCC
Confidence 99998665 599999987432211111124568899999999998443333 689999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHc---cC-CeEEEEecChhhHhh-cceEEEccCC
Q 000711 598 KFAILDECTSAVTTDMEERFCAKVRA---MG-TSCITISHRPALVAF-HDVVLSLDGE 650 (1338)
Q Consensus 598 ~illLDEpts~LD~~~~~~i~~~l~~---~~-~t~i~itH~~~~~~~-~d~i~~l~~~ 650 (1338)
+++||||||++||+.+...+.+.+++ .| +||+++||.++.+.. ||+|++++++
T Consensus 156 ~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G 213 (293)
T COG1131 156 ELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDG 213 (293)
T ss_pred CEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999998865 35 899999999998865 9999999873
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=348.21 Aligned_cols=202 Identities=18% Similarity=0.208 Sum_probs=163.8
Q ss_pred CceEEeeeEEeCCCc----cccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc------
Q 000711 1098 DSISFSKLDIITPSQ----KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE------ 1167 (1338)
Q Consensus 1098 g~I~f~nV~f~yp~~----~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~------ 1167 (1338)
..|+++||+|.|++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 359999999999742 4699999999999999999999999999999999999999999999999887542
Q ss_pred ------------cCCcccEEEEcCCC--CCCCCCHHHHhcCCCc---hHHHHHHHHhhhcCCccccccccCchHHHHHHH
Q 000711 1168 ------------AGSGCGIFYVPQRP--YTCLGTLRDQIIYPLS---REEAELRALKLHGKGEKLVDTTNILDSYLKTIL 1230 (1338)
Q Consensus 1168 ------------~~lr~~i~~VpQdP--~LF~GTIReNL~~p~~---~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l 1230 (1338)
..+|++|+||||+| .+|++|+++||.++.. .+.+ + ....+.+++
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~--~-----------------~~~~~~~~l 160 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKS--E-----------------AKKLAKFYL 160 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHH--H-----------------HHHHHHHHH
Confidence 13456799999999 7999999999976421 0000 0 012234455
Q ss_pred hhCCch-hhhhhhcccCcccCcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEE
Q 000711 1231 EGVRLS-YLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFV 1306 (1338)
Q Consensus 1231 ~~~~L~-~~i~~~~~Gldt~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI 1306 (1338)
+.++|. ...+ ....+||||||||++|||||+++|++||||||||+||+.+++.+.+.+++ .|+|+|
T Consensus 161 ~~~gL~~~~~~----------~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~Tii 230 (320)
T PRK13631 161 NKMGLDDSYLE----------RSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVF 230 (320)
T ss_pred HHcCCChhHhc----------CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 666663 2221 12467999999999999999999999999999999999999988776643 489999
Q ss_pred EeccCCCCc-ccccceEEEecCC
Q 000711 1307 TSSQRPALI-PFHSLELRLIDGE 1328 (1338)
Q Consensus 1307 ~IAHRl~~i-~~~d~~l~l~~g~ 1328 (1338)
+|+|+++.+ +++|++++|.+|+
T Consensus 231 ivtHd~~~~~~~adri~vl~~G~ 253 (320)
T PRK13631 231 VITHTMEHVLEVADEVIVMDKGK 253 (320)
T ss_pred EEecCHHHHHHhCCEEEEEECCE
Confidence 999999865 7899999997765
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=332.98 Aligned_cols=203 Identities=25% Similarity=0.308 Sum_probs=164.5
Q ss_pred eEEeeeEEeCCCc---cccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc------CC
Q 000711 1100 ISFSKLDIITPSQ---KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA------GS 1170 (1338)
Q Consensus 1100 I~f~nV~f~yp~~---~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~------~l 1170 (1338)
|+++||++.|++. +++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.... ..
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 5789999999753 67999999999999999999999999999999999999999999999999887642 13
Q ss_pred cccEEEEcCCCCCCCC-CHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCccc
Q 000711 1171 GCGIFYVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDAN 1249 (1338)
Q Consensus 1171 r~~i~~VpQdP~LF~G-TIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~ 1249 (1338)
+.+++||||+|.+|.+ |++||+.++... .+.. ....++.+.++++.+++....++.
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~----------~~~~------~~~~~~~~~~~l~~~~l~~~~~~~------- 137 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLL----------AGVP------KKERRERAEELLERVGLGDRLNHY------- 137 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhh----------cCCC------HHHHHHHHHHHHHHcCCchhhhcC-------
Confidence 4579999999999986 999999753210 0000 000123455667777764433222
Q ss_pred CcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCcccccceEEEe
Q 000711 1250 LNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALIPFHSLELRLI 1325 (1338)
Q Consensus 1250 ~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i~~~d~~l~l~ 1325 (1338)
..+||||||||++||||++++|++|||||||++||+++.+.+.+.+++ .++|+|+|+|+++.+.++|+++.|.
T Consensus 138 ---~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~ 214 (218)
T cd03255 138 ---PSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELR 214 (218)
T ss_pred ---hhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEee
Confidence 347999999999999999999999999999999999999888776543 3899999999998888999999997
Q ss_pred cCC
Q 000711 1326 DGE 1328 (1338)
Q Consensus 1326 ~g~ 1328 (1338)
+|+
T Consensus 215 ~G~ 217 (218)
T cd03255 215 DGK 217 (218)
T ss_pred CCc
Confidence 763
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=332.77 Aligned_cols=209 Identities=26% Similarity=0.361 Sum_probs=176.0
Q ss_pred CceEEeeeEEeCCCc-cccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc--CCcccE
Q 000711 1098 DSISFSKLDIITPSQ-KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGI 1174 (1338)
Q Consensus 1098 g~I~f~nV~f~yp~~-~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~--~lr~~i 1174 (1338)
|.|+++|+++.|++. .++|+|+||+|++||.++|+||||||||||+++|.|+.+|++|+|.++|.++.... ..+.++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 468999999999753 67999999999999999999999999999999999999999999999999886542 234579
Q ss_pred EEEcCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCc-cc
Q 000711 1175 FYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLN-WE 1253 (1338)
Q Consensus 1175 ~~VpQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~-~g 1253 (1338)
+|+||+|.+|..|++||+.++.... ....+.++++.+++.+..+..|.|+++... ..
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~----------------------~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 138 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLA----------------------DDERILRAAELAGVTDFVNKHPNGLDLQIGERG 138 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCC----------------------CHHHHHHHHHHcCcHHHHHhccccccceecCCC
Confidence 9999999999999999997542110 012234455666777777777888888763 45
Q ss_pred CCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1254 DILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1254 ~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
.+||||||||++||||++.+|++|||||||++||.++.+.+.+.+++ .++|+|+|+|+++.+.++|+++.+.+|+
T Consensus 139 ~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~ 215 (220)
T cd03245 139 RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGR 215 (220)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCe
Confidence 78999999999999999999999999999999999999988887754 2589999999999889999999997653
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=336.95 Aligned_cols=198 Identities=27% Similarity=0.378 Sum_probs=166.3
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC------ccccccEEEE
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYV 518 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v 518 (1338)
++++||++.|++.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 4689999998643679999999999999999999999999999999999999999999999864 1234679999
Q ss_pred ecCCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCch--HHhcCCCCccccCCCCCChhHHHHHHHHHHHcc
Q 000711 519 PQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY--LLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1338)
Q Consensus 519 ~Q~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~ 595 (1338)
||+|.++. .|++||+.++............+++.++++.+++.+ ..++.+ .+||||||||++||||+++
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--------~~LS~G~~qrv~laral~~ 152 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYP--------HELSGGQQQRVGVARALAA 152 (242)
T ss_pred ccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcCh--------hhCCHHHHHHHHHHHHHhc
Confidence 99998875 699999987532111001112456788899999985 666544 6899999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 596 KPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 596 ~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+ ..+|++++|+++
T Consensus 153 ~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G 212 (242)
T cd03295 153 DPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNG 212 (242)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999888764 289999999999965 579999999863
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=341.94 Aligned_cols=199 Identities=25% Similarity=0.329 Sum_probs=169.6
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc------cccccEEE
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------DLNKEIFY 517 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~~~~~i~~ 517 (1338)
.++++||++.|++++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.++|
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 488999999997556799999999999999999999999999999999999999999999998641 23457999
Q ss_pred EecCC--CCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHcc
Q 000711 518 VPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1338)
Q Consensus 518 v~Q~~--~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~ 595 (1338)
+||+| .++..|++||+.++...........++++.++++.+++.+..++.+ ..||||||||++|||||+.
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~Gq~qrl~laraL~~ 154 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP--------HHLSGGEKKRVAIAGVIAM 154 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc--------ccCCHHHHHHHHHHHHHHc
Confidence 99998 3677899999987532111001112345788999999998888876 6899999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 596 KPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 596 ~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+ +.||++++|+++
T Consensus 155 ~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G 214 (277)
T PRK13652 155 EPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKG 214 (277)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999888754 389999999999987 589999999863
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=330.85 Aligned_cols=202 Identities=25% Similarity=0.313 Sum_probs=163.2
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccccCCcccEEEEcC
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 1179 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~~lr~~i~~VpQ 1179 (1338)
|+++||++.|++ +++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.++|.++......+.+++||||
T Consensus 1 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 79 (213)
T cd03259 1 LELKGLSKTYGS-VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQ 79 (213)
T ss_pred CeeeeeEEEeCC-eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcC
Confidence 578999999965 5799999999999999999999999999999999999999999999999988765444567999999
Q ss_pred CCCCCC-CCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCCCh
Q 000711 1180 RPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 1258 (1338)
Q Consensus 1180 dP~LF~-GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSg 1258 (1338)
+|.+|. .|+++|+.++.... +. .....++.+.++++.+++....++. ..+|||
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~----------~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~LSg 133 (213)
T cd03259 80 DYALFPHLTVAENIAFGLKLR----------GV------PKAEIRARVRELLELVGLEGLLNRY----------PHELSG 133 (213)
T ss_pred chhhccCCcHHHHHHhHHHHc----------CC------CHHHHHHHHHHHHHHcCChhhhhcC----------hhhCCH
Confidence 999886 69999996531100 00 0000123355667777765443332 246999
Q ss_pred hHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCC-cccccceEEEecCC
Q 000711 1259 GEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPAL-IPFHSLELRLIDGE 1328 (1338)
Q Consensus 1259 GQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~-i~~~d~~l~l~~g~ 1328 (1338)
|||||++||||++++|+++||||||++||.++.+.+.+.+++ .|+|||+|+|+++. .+++|+++.|.+|+
T Consensus 134 G~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~ 208 (213)
T cd03259 134 GQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGR 208 (213)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCE
Confidence 999999999999999999999999999999999888776643 38999999999975 57899999997663
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-36 Score=332.18 Aligned_cols=197 Identities=31% Similarity=0.425 Sum_probs=161.8
Q ss_pred EEEEeEEEEcCCC---CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc---------ccc
Q 000711 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DLN 512 (1338)
Q Consensus 445 i~~~~v~~~~~~~---~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~---------~~~ 512 (1338)
++++||++.|++. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..+
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 6899999999654 2799999999999999999999999999999999999999999999998641 234
Q ss_pred ccEEEEecCC--CCC-CCCHHHHhcCCCCCCcccC-CCCHHH-HHHHHHHcCCc-hHHhcCCCCccccCCCCCChhHHHH
Q 000711 513 KEIFYVPQRP--YTA-VGTLRDQLIYPLTSDQEVE-PLTHGG-MVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQR 586 (1338)
Q Consensus 513 ~~i~~v~Q~~--~l~-~~tl~eni~~~~~~~~~~~-~~~~~~-~~~~l~~~~l~-~~~~~~~~~~~~~~g~~LSgGqkQR 586 (1338)
+.++|+||+| .++ ..|++||+.++........ ....++ ..++++.+++. +..++.+ .+||||||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LS~G~~qr 153 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYP--------HELSGGQRQR 153 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCc--------hhcCHHHHHH
Confidence 6799999999 344 5799999976421110000 001112 24678888884 5666654 6899999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc---c-CCeEEEEecChhhHh-hcceEEEccC
Q 000711 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 587 lalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~---~-~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
++|||||+.+|+++||||||++||+.+++.+++.+++ . |+|+|++||+++.+. .+|++++|++
T Consensus 154 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 221 (228)
T cd03257 154 VAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYA 221 (228)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeC
Confidence 9999999999999999999999999999999998864 2 899999999999886 7999999986
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=313.30 Aligned_cols=211 Identities=21% Similarity=0.259 Sum_probs=167.3
Q ss_pred ceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc-----cCCccc
Q 000711 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-----AGSGCG 1173 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~-----~~lr~~ 1173 (1338)
.|+++||+..||++..+|+||||+|++||.|+|+||||||||||++.|.|++||++|+|.++|.++... ...|.+
T Consensus 3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred eEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHh
Confidence 589999999999999999999999999999999999999999999999999999999999999999876 234668
Q ss_pred EEEEcCCCCCCC-CCHHHHhcCCC-chHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCc
Q 000711 1174 IFYVPQRPYTCL-GTLRDQIIYPL-SREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLN 1251 (1338)
Q Consensus 1174 i~~VpQdP~LF~-GTIReNL~~p~-~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~ 1251 (1338)
|++|.|.|-|-+ -|+-+|+..+. ++.. .++- ..+. .++.......++|+.+++.+..-.
T Consensus 83 iGmIfQ~~nLv~r~sv~~NVl~grl~~~s-~~~s--lfgl------fsk~dk~~Al~aLervgi~~~A~q---------- 143 (258)
T COG3638 83 IGMIFQQFNLVPRLSVLENVLLGRLGYTS-TWRS--LFGL------FSKEDKAQALDALERVGILDKAYQ---------- 143 (258)
T ss_pred ceeEeccCCcccccHHHHHHHhhhcccch-HHHH--HhCC------CCHHHHHHHHHHHHHcCcHHHHHH----------
Confidence 999999999875 58999986432 1110 0100 0000 001112234456777777443211
Q ss_pred ccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHH----hcCCeEEEeccCCC-CcccccceEEEec
Q 000711 1252 WEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAK----DMGITFVTSSQRPA-LIPFHSLELRLID 1326 (1338)
Q Consensus 1252 ~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~----~~~~TvI~IAHRl~-~i~~~d~~l~l~~ 1326 (1338)
+.++|||||+||++|||||..+|+|++-|||||+||+.+-+.+.+.++ +.|.|+|+.-|..+ -.+|+|+++-|.+
T Consensus 144 ra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~ 223 (258)
T COG3638 144 RASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKA 223 (258)
T ss_pred HhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecC
Confidence 235799999999999999999999999999999999999887766543 46999999999998 5589999999977
Q ss_pred CC
Q 000711 1327 GE 1328 (1338)
Q Consensus 1327 g~ 1328 (1338)
|+
T Consensus 224 G~ 225 (258)
T COG3638 224 GR 225 (258)
T ss_pred Cc
Confidence 64
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=334.50 Aligned_cols=197 Identities=22% Similarity=0.284 Sum_probs=165.4
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc------c-ccccEEE
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------D-LNKEIFY 517 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~-~~~~i~~ 517 (1338)
++++||++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. . .++.++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRYG-KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEeC-CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 46899999996 46799999999999999999999999999999999999999999999998641 1 2356999
Q ss_pred EecCCCCCCC-CHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccC
Q 000711 518 VPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1338)
Q Consensus 518 v~Q~~~l~~~-tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~ 596 (1338)
+||++.++.+ |++||+.++............+++.++++.+++.+..++.+ .+||||||||++||||++.+
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~la~al~~~ 151 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKA--------SSLSGGERRRVEIARALATN 151 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh--------hhCCHHHHHHHHHHHHHhcC
Confidence 9999988876 99999987532111001112345678899999987777655 68999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 597 PKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 597 p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
|+++||||||++||+.+.+.+++.+++ .++|+|++||+++.+ ..+|++++|+++
T Consensus 152 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G 209 (232)
T cd03218 152 PKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEG 209 (232)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999987764 488999999999755 579999999863
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=329.46 Aligned_cols=196 Identities=22% Similarity=0.305 Sum_probs=161.0
Q ss_pred EEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccccCCcccEEEEcCC
Q 000711 1101 SFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQR 1180 (1338)
Q Consensus 1101 ~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~~lr~~i~~VpQd 1180 (1338)
+++||+++|++.+++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.++|.++.. ...+++++|+||+
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~i~~~~q~ 79 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA-KERRKSIGYVMQD 79 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh-HHhhcceEEEecC
Confidence 368999999753679999999999999999999999999999999999999999999999998854 2234579999999
Q ss_pred C--CCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCCCh
Q 000711 1181 P--YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 1258 (1338)
Q Consensus 1181 P--~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSg 1258 (1338)
| .+|..|++||+.++.... + ..+..+.++++.+++.+..++. ...|||
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~----------~----------~~~~~~~~~l~~~~l~~~~~~~----------~~~LS~ 129 (205)
T cd03226 80 VDYQLFTDSVREELLLGLKEL----------D----------AGNEQAETVLKDLDLYALKERH----------PLSLSG 129 (205)
T ss_pred hhhhhhhccHHHHHhhhhhhc----------C----------ccHHHHHHHHHHcCCchhcCCC----------chhCCH
Confidence 8 467899999997642110 0 0123456677777775443332 246999
Q ss_pred hHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCCCc-ccccceEEEecC
Q 000711 1259 GEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLELRLIDG 1327 (1338)
Q Consensus 1259 GQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~~i-~~~d~~l~l~~g 1327 (1338)
|||||++||||++++|++|||||||++||+++.+.+.+.+++ .++|+|+++|+++.+ +++|+++.|.+|
T Consensus 130 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G 202 (205)
T cd03226 130 GQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANG 202 (205)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999888776643 489999999999866 579999999765
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=341.08 Aligned_cols=200 Identities=22% Similarity=0.300 Sum_probs=171.1
Q ss_pred CcEEEEeEEEEcCC-----CCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc-------c
Q 000711 443 NYIEFSGVKVVTPT-----GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------D 510 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~-----~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~-------~ 510 (1338)
..++++|+++.|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 36899999999974 25799999999999999999999999999999999999999999999998641 2
Q ss_pred ccccEEEEecCCC--CCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHH
Q 000711 511 LNKEIFYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1338)
Q Consensus 511 ~~~~i~~v~Q~~~--l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRla 588 (1338)
.++.++|+||+|. ++..|+.+|+.++...........++++.++++.+++.++.++.+ .+||||||||++
T Consensus 83 ~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--------~~LS~G~~qrv~ 154 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP--------HLLSGGQKQRVA 154 (280)
T ss_pred HhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc--------ccCCHHHHHHHH
Confidence 3567999999984 566699999988632111111112456788999999999888876 689999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHhhcceEEEccCC
Q 000711 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 589 lARal~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~~~d~i~~l~~~ 650 (1338)
|||||+.+|+++||||||++||+.+...+.+.+++ .|+|+|++||+++.+..||++++|+++
T Consensus 155 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G 220 (280)
T PRK13633 155 IAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSG 220 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECC
Confidence 99999999999999999999999999999988764 389999999999998889999999863
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=327.27 Aligned_cols=201 Identities=27% Similarity=0.351 Sum_probs=171.5
Q ss_pred ceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcc---ccCCcccEE
Q 000711 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDE---EAGSGCGIF 1175 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~---~~~lr~~i~ 1175 (1338)
.|+++|++|+||+..++|+|+||+|++||.++|+|+||||||||+++|.|+++|.+|+|.+||.++.. ...+|++++
T Consensus 3 ~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG 82 (235)
T COG1122 3 MIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVG 82 (235)
T ss_pred eEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceE
Confidence 58999999999887889999999999999999999999999999999999999999999999999873 356677899
Q ss_pred EEcCCC--CCCCCCHHHHhcCCCc---hHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC
Q 000711 1176 YVPQRP--YTCLGTLRDQIIYPLS---REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 1250 (1338)
Q Consensus 1176 ~VpQdP--~LF~GTIReNL~~p~~---~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~ 1250 (1338)
+|.|+| .+|..||.+.++|+.. ...++ .+..+.++++.+++.++.++.|
T Consensus 83 ~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e-------------------~~~rv~~~l~~vgl~~~~~r~p------- 136 (235)
T COG1122 83 LVFQNPDDQLFGPTVEDEVAFGLENLGLPREE-------------------IEERVAEALELVGLEELLDRPP------- 136 (235)
T ss_pred EEEECcccccccCcHHHHHhhchhhcCCCHHH-------------------HHHHHHHHHHHcCchhhccCCc-------
Confidence 999999 7999999999988432 11110 1345667888888876654433
Q ss_pred cccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCC-CcccccceEEEe
Q 000711 1251 NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPA-LIPFHSLELRLI 1325 (1338)
Q Consensus 1251 ~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~-~i~~~d~~l~l~ 1325 (1338)
.+||||||||+|||.+|..+|+|||||||||+||+...+.+.+.+++ .|.|+|+|+|+++ ...++|++++|.
T Consensus 137 ---~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~ 213 (235)
T COG1122 137 ---FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLD 213 (235)
T ss_pred ---cccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEE
Confidence 46999999999999999999999999999999999998877666543 3789999999997 556699999998
Q ss_pred cCC
Q 000711 1326 DGE 1328 (1338)
Q Consensus 1326 ~g~ 1328 (1338)
+|+
T Consensus 214 ~G~ 216 (235)
T COG1122 214 DGK 216 (235)
T ss_pred CCE
Confidence 865
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=330.22 Aligned_cols=203 Identities=23% Similarity=0.261 Sum_probs=163.2
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc-----CCcccE
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSGCGI 1174 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~-----~lr~~i 1174 (1338)
|+++||++.|++.+++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++...+ ..++++
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 578999999976567999999999999999999999999999999999999999999999999886542 234579
Q ss_pred EEEcCCCCCCC-CCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCccc
Q 000711 1175 FYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 1253 (1338)
Q Consensus 1175 ~~VpQdP~LF~-GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g 1253 (1338)
+||||+|.+|. .|+++|+.++.... +. ..+..++.+.++++.+++....++. .
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~~----------~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~ 134 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVT----------GV------PPREIRKRVPAALELVGLSHKHRAL----------P 134 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHHc----------CC------CHHHHHHHHHHHHHHcCCHHHhhCC----------h
Confidence 99999999998 49999997542100 00 0000123455666776665433322 2
Q ss_pred CCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCCCcc-cccceEEEecCC
Q 000711 1254 DILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALIP-FHSLELRLIDGE 1328 (1338)
Q Consensus 1254 ~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~~i~-~~d~~l~l~~g~ 1328 (1338)
.+||||||||++||||++++|+++||||||++||+++.+.+.+.+++ .++|+|+|+|++..+. ++|+++.|.+|+
T Consensus 135 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~ 213 (214)
T cd03292 135 AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGK 213 (214)
T ss_pred hhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 46999999999999999999999999999999999999888776643 4899999999998765 689999997653
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=345.81 Aligned_cols=197 Identities=25% Similarity=0.282 Sum_probs=166.5
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC-----ccccccEEEE
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYV 518 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~-----~~~~~~i~~v 518 (1338)
.|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...+++++|+
T Consensus 4 ~i~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v 82 (303)
T TIGR01288 4 AIDLVGVSKSYG-DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVV 82 (303)
T ss_pred EEEEEeEEEEeC-CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEE
Confidence 589999999996 4679999999999999999999999999999999999999999999999864 1235679999
Q ss_pred ecCCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCC
Q 000711 519 PQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1338)
Q Consensus 519 ~Q~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p 597 (1338)
||++.++. .|++||+.+.............+++.++++.+++.+..++.+ .+||||||||++|||||+++|
T Consensus 83 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~--------~~LSgG~~qrv~la~al~~~p 154 (303)
T TIGR01288 83 PQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRV--------ALLSGGMKRRLTLARALINDP 154 (303)
T ss_pred eccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCch--------hhCCHHHHHHHHHHHHHhcCC
Confidence 99998775 699999975321100000111235667888999988777655 689999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 598 KFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 598 ~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
+++||||||++||+.+.+.+++.+++ .|+|+|++||+++.+. .||++++|++
T Consensus 155 ~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~ 210 (303)
T TIGR01288 155 QLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLES 210 (303)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999998765 4899999999999875 7999999986
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=330.61 Aligned_cols=200 Identities=26% Similarity=0.410 Sum_probs=171.8
Q ss_pred EEEEeEEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC------ccccccEEE
Q 000711 445 IEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1338)
Q Consensus 445 i~~~~v~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~ 517 (1338)
++++|+++.|++. +++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+ ..+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4689999998653 379999999999999999999999999999999999999999999999854 123567999
Q ss_pred EecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCcc---ccCCCCCChhHHHHHHHHHHHc
Q 000711 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKE---INWGDELSLGEQQRLGMARLFY 594 (1338)
Q Consensus 518 v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~---~~~g~~LSgGqkQRlalARal~ 594 (1338)
+||+++++..|++||+.++... ....++.+.++..++.++++.++.+.. ......||||||||++|||||+
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 154 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPG------ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALL 154 (234)
T ss_pred eCCCCeeccccHHHHhhccCCC------CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHh
Confidence 9999999999999999886432 234556677788888888877653222 1346789999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhHhhcceEEEccCC
Q 000711 595 HKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 595 ~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~~~~d~i~~l~~~ 650 (1338)
++|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+..||++++|+++
T Consensus 155 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G 212 (234)
T cd03251 155 KDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDG 212 (234)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCC
Confidence 99999999999999999999999998865 388999999999998889999999874
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=329.95 Aligned_cols=203 Identities=24% Similarity=0.328 Sum_probs=164.0
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc-----CCcccE
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSGCGI 1174 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~-----~lr~~i 1174 (1338)
|+++|+++.|+++.++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.++|.++.... ..+.++
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRI 81 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhhe
Confidence 689999999965567999999999999999999999999999999999999999999999999987642 235579
Q ss_pred EEEcCCCCCCC-CCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCccc
Q 000711 1175 FYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 1253 (1338)
Q Consensus 1175 ~~VpQdP~LF~-GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g 1253 (1338)
+|+||+|.+|. .|+++|+.++.. ..+. .+...++.+.++++.+++....++. .
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~----------~~~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~ 135 (214)
T TIGR02673 82 GVVFQDFRLLPDRTVYENVALPLE----------VRGK------KEREIQRRVGAALRQVGLEHKADAF----------P 135 (214)
T ss_pred EEEecChhhccCCcHHHHHHHHHH----------HcCC------CHHHHHHHHHHHHHHcCChhhhhCC----------h
Confidence 99999999986 699999964310 0000 0001123456667777775433322 2
Q ss_pred CCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCCCcc-cccceEEEecCC
Q 000711 1254 DILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALIP-FHSLELRLIDGE 1328 (1338)
Q Consensus 1254 ~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~~i~-~~d~~l~l~~g~ 1328 (1338)
..||||||||++||||++++|+++||||||++||.++...+.+.+++ .++|+|+|+|+++.+. ++|+++.|.+|+
T Consensus 136 ~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 136 EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred hhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 46999999999999999999999999999999999999888776643 4899999999997654 689999997653
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-36 Score=334.48 Aligned_cols=207 Identities=27% Similarity=0.356 Sum_probs=173.7
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc--CCcccEEEE
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFYV 1177 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~--~lr~~i~~V 1177 (1338)
|+++|+++.|++..++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.... ..+..++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 578999999976667999999999999999999999999999999999999999999999999887642 334579999
Q ss_pred cCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCc-ccCCC
Q 000711 1178 PQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLN-WEDIL 1256 (1338)
Q Consensus 1178 pQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~-~g~~L 1256 (1338)
||+|.+|++|+++|+.++.... .+..+.+.++.+++...++.+|.|+++..+ +..+|
T Consensus 81 ~q~~~~~~~tv~~nl~~~~~~~----------------------~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~L 138 (236)
T cd03253 81 PQDTVLFNDTIGYNIRYGRPDA----------------------TDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKL 138 (236)
T ss_pred CCCChhhcchHHHHHhhcCCCC----------------------CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcC
Confidence 9999999999999997653210 112233344555665666666778888763 56789
Q ss_pred ChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1257 SLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1257 SgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
|+|||||++|||||+++|++|||||||++||+++.+.+.+.++. .+.|+|+++|+++.+..+|+++.|.+|+
T Consensus 139 S~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~ 212 (236)
T cd03253 139 SGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGR 212 (236)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999888776643 2889999999999888899999997664
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=328.71 Aligned_cols=192 Identities=25% Similarity=0.330 Sum_probs=163.3
Q ss_pred EEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc----------cccccEE
Q 000711 447 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----------DLNKEIF 516 (1338)
Q Consensus 447 ~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~----------~~~~~i~ 516 (1338)
++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++
T Consensus 1 i~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKFG-DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEEC-CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 468899886 46899999999999999999999999999999999999999999999998641 1245799
Q ss_pred EEecCCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHcc
Q 000711 517 YVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1338)
Q Consensus 517 ~v~Q~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~ 595 (1338)
|++|++.++. .|++||+.++............+++.++++.+++++..++.+ .+||||||||++|||||++
T Consensus 80 ~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~lS~G~~qr~~laral~~ 151 (206)
T TIGR03608 80 YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKI--------YELSGGEQQRVALARAILK 151 (206)
T ss_pred EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCCh--------hhCCHHHHHHHHHHHHHHc
Confidence 9999998876 699999987432111001122456788999999988777755 6899999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHhhcceEEEc
Q 000711 596 KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSL 647 (1338)
Q Consensus 596 ~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~~~d~i~~l 647 (1338)
+|+++||||||++||+.+.+.+.+.+++ .|.|+|++||+++....||++++|
T Consensus 152 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 152 DPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999998865 389999999999988899999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=295.56 Aligned_cols=185 Identities=27% Similarity=0.408 Sum_probs=161.3
Q ss_pred CCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC------ccccccEEEEecCCCCCCCCH
Q 000711 456 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTL 529 (1338)
Q Consensus 456 ~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v~Q~~~l~~~tl 529 (1338)
++.++|+++||++.+||.++|+||||||||||+|+++-+.+|++|++.+.|.+ ..+|.+|+||.|.|-+|.+||
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tV 93 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTV 93 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccch
Confidence 46789999999999999999999999999999999999999999999999976 346789999999999999999
Q ss_pred HHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCC
Q 000711 530 RDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609 (1338)
Q Consensus 530 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~illLDEpts~L 609 (1338)
.||+.||..... ...+.+...+.++.+++.+.+-..+ ..+||||||||+||+|-|.--|+||+||||||||
T Consensus 94 eDNlifP~~~r~--rr~dr~aa~~llar~~l~~~~L~k~-------it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 94 EDNLIFPWQIRN--RRPDRAAALDLLARFALPDSILTKN-------ITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hhccccchHHhc--cCCChHHHHHHHHHcCCchhhhcch-------hhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 999999965322 2346677888999999876543322 2689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHH----HccCCeEEEEecChhh-HhhcceEEEccC
Q 000711 610 TTDMEERFCAKV----RAMGTSCITISHRPAL-VAFHDVVLSLDG 649 (1338)
Q Consensus 610 D~~~~~~i~~~l----~~~~~t~i~itH~~~~-~~~~d~i~~l~~ 649 (1338)
|+.+.+.+-+.+ ++.+..++.|||+.+. ++++|+++.+..
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~ 209 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQP 209 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEecc
Confidence 999987766654 4568999999999987 889999998865
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=324.87 Aligned_cols=197 Identities=18% Similarity=0.314 Sum_probs=167.8
Q ss_pred EEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc----------cccccE
Q 000711 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----------DLNKEI 515 (1338)
Q Consensus 446 ~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~----------~~~~~i 515 (1338)
.+.|+.+.|+.+.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 4678899998777899999999999999999999999999999999999999999999998641 123579
Q ss_pred EEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccc---cCCCCCChhHHHHHHHHHH
Q 000711 516 FYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARL 592 (1338)
Q Consensus 516 ~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARa 592 (1338)
+|++|+|+++..|++||+.++.. ..+++..++++.+++.+.++..|.+.++ .....||||||||++||||
T Consensus 82 ~~~~q~~~~~~~t~~~nl~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~lara 154 (218)
T cd03290 82 AYAAQKPWLLNATVEENITFGSP-------FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARA 154 (218)
T ss_pred EEEcCCCccccccHHHHHhhcCc-------CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHH
Confidence 99999999998999999988642 1234567788888988877766543322 2357899999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHH--H---HHccCCeEEEEecChhhHhhcceEEEccC
Q 000711 593 FYHKPKFAILDECTSAVTTDMEERFCA--K---VRAMGTSCITISHRPALVAFHDVVLSLDG 649 (1338)
Q Consensus 593 l~~~p~illLDEpts~LD~~~~~~i~~--~---l~~~~~t~i~itH~~~~~~~~d~i~~l~~ 649 (1338)
++.+|+++||||||++||+.+.+.+++ . +++.|+|+|++||+.+.+..+|++++|++
T Consensus 155 l~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~ 216 (218)
T cd03290 155 LYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKD 216 (218)
T ss_pred HhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecC
Confidence 999999999999999999999887776 3 33458999999999999999999999975
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=333.37 Aligned_cols=201 Identities=24% Similarity=0.346 Sum_probs=175.6
Q ss_pred CCcEEEEeEEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC------cccccc
Q 000711 442 ANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKE 514 (1338)
Q Consensus 442 ~~~i~~~~v~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~ 514 (1338)
.+.|+++|+++.|++. +++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ...++.
T Consensus 17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~ 96 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSR 96 (257)
T ss_pred CceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhh
Confidence 5689999999999753 579999999999999999999999999999999999999999999999864 124567
Q ss_pred EEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccc---cCCCCCChhHHHHHHHHH
Q 000711 515 IFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMAR 591 (1338)
Q Consensus 515 i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkQRlalAR 591 (1338)
++|++|+|+++.+|++||+..... ...+++.++++.+++.+.++.+|.+.++ .++.+||||||||++|||
T Consensus 97 i~~v~q~~~l~~~tv~~nl~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~lar 169 (257)
T cd03288 97 LSIILQDPILFSGSIRFNLDPECK-------CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLAR 169 (257)
T ss_pred EEEECCCCcccccHHHHhcCcCCC-------CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHH
Confidence 999999999999999999864311 2345677888888999888887643322 367899999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhHhhcceEEEccC
Q 000711 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 649 (1338)
Q Consensus 592 al~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~~~~d~i~~l~~ 649 (1338)
|++++|+++||||||++||+.+++.+++.+++ .+.|+|++||+++.+..||++++|++
T Consensus 170 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~ 229 (257)
T cd03288 170 AFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSR 229 (257)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEEC
Confidence 99999999999999999999999999998865 48999999999999988999999986
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=327.51 Aligned_cols=203 Identities=26% Similarity=0.418 Sum_probs=166.2
Q ss_pred CCcEEEEeEEEEcCCC--CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc------cccc
Q 000711 442 ANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------DLNK 513 (1338)
Q Consensus 442 ~~~i~~~~v~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~~~~ 513 (1338)
.+.++++|+++.|++. .++++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. ..++
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 4679999999999753 4799999999999999999999999999999999999999999999998641 2346
Q ss_pred cEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCc---cccCCCCCChhHHHHHHHH
Q 000711 514 EIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEK---EINWGDELSLGEQQRLGMA 590 (1338)
Q Consensus 514 ~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---~~~~g~~LSgGqkQRlalA 590 (1338)
.++|+||+|.++..|++||+.++.... ...++.+..+..++.++++.++.+. ......+||||||||++||
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~------~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~la 162 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSC------SFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIA 162 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCC------CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHH
Confidence 799999999999899999998764321 1222333333444445555443211 1123478999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhHhhcceEEEccCC
Q 000711 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 591 Ral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~~~~d~i~~l~~~ 650 (1338)
||++++|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+..+|++++|+++
T Consensus 163 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g 224 (226)
T cd03248 163 RALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGG 224 (226)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCC
Confidence 999999999999999999999999999998875 368999999999999889999999863
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=325.43 Aligned_cols=194 Identities=22% Similarity=0.321 Sum_probs=165.3
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC----ccccccEEEEec
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 520 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~----~~~~~~i~~v~Q 520 (1338)
++++||++.|+. .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+||
T Consensus 1 ~~~~~l~~~~~~---~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (213)
T TIGR01277 1 LALDKVRYEYEH---LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77 (213)
T ss_pred CeEEeeeEEeCC---cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEec
Confidence 368999999862 4689999999999999999999999999999999999999999999864 134567999999
Q ss_pred CCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCE
Q 000711 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1338)
Q Consensus 521 ~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~i 599 (1338)
+|.++. .|++||+.++...........++++.++++.+++++..++.| .+||||||||++||||++.+|++
T Consensus 78 ~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~laral~~~p~l 149 (213)
T TIGR01277 78 ENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP--------EQLSGGQRQRVALARCLVRPNPI 149 (213)
T ss_pred cCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc--------ccCCHHHHHHHHHHHHHhcCCCE
Confidence 998886 599999987532110001123456788999999998888876 68999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 600 llLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
++|||||++||+.+.+.+.+.+++ .++|+|++||+++.+. .+|++++|++
T Consensus 150 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~ 204 (213)
T TIGR01277 150 LLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQ 204 (213)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEEC
Confidence 999999999999999999888754 3789999999999875 6999999976
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=339.59 Aligned_cols=197 Identities=25% Similarity=0.364 Sum_probs=168.3
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc--------cccccEE
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------DLNKEIF 516 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~--------~~~~~i~ 516 (1338)
++++||++.|++++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.|+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 81 (275)
T PRK13639 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVG 81 (275)
T ss_pred EEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheE
Confidence 78999999997556799999999999999999999999999999999999999999999998641 1346799
Q ss_pred EEecCC--CCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000711 517 YVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1338)
Q Consensus 517 ~v~Q~~--~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1338)
|+||+| .++..|++||+.++............+++.++++.+++.++.++.+ .+||||||||++||||++
T Consensus 82 ~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~--------~~LS~Gq~qrv~laral~ 153 (275)
T PRK13639 82 IVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPP--------HHLSGGQKKRVAIAGILA 153 (275)
T ss_pred EEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCCh--------hhCCHHHHHHHHHHHHHh
Confidence 999997 4677899999987532111001112346778999999988877765 689999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 595 ~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
.+|++++|||||++||+.+...+.+.+++ .|+|+|++||+++.+. .||++++|++
T Consensus 154 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~ 212 (275)
T PRK13639 154 MKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSD 212 (275)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999988764 3899999999999875 7999999986
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=341.85 Aligned_cols=198 Identities=26% Similarity=0.352 Sum_probs=166.3
Q ss_pred cEEEEeEEEEcCCC----CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc----------
Q 000711 444 YIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------- 509 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~----~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~---------- 509 (1338)
.++++|+++.|+++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 37899999999642 4799999999999999999999999999999999999999999999999641
Q ss_pred cccccEEEEecCC--CCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCc-hHHhcCCCCccccCCCCCChhHHHH
Q 000711 510 DLNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQR 586 (1338)
Q Consensus 510 ~~~~~i~~v~Q~~--~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~g~~LSgGqkQR 586 (1338)
..++.++|+||+| .++..|++||+.++............+++.++++.++++ ++.++.+ .+||||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--------~~LSgGq~qr 153 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSP--------FELSGGQMRR 153 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCc--------ccCCHHHHHH
Confidence 1245799999998 567789999998753211100111234577889999997 5666655 6899999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhH-hhcceEEEccC
Q 000711 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDG 649 (1338)
Q Consensus 587 lalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~-~~~d~i~~l~~ 649 (1338)
++|||||+.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+ ..||++++|++
T Consensus 154 l~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~ 220 (287)
T PRK13641 154 VAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEH 220 (287)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999888764 489999999999986 58999999986
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-36 Score=340.27 Aligned_cols=200 Identities=27% Similarity=0.385 Sum_probs=170.6
Q ss_pred CcEEEEeEEEEcCC-CCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCc---cEEEeCCCCc------ccc
Q 000711 443 NYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS---GHIAKPGVGS------DLN 512 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~-~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~---G~i~~~~~~~------~~~ 512 (1338)
..++++|+++.|++ .+++++|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.+. ..+
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 46999999999975 3579999999999999999999999999999999999999988 8999998651 234
Q ss_pred ccEEEEecCCC--CCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHH
Q 000711 513 KEIFYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1338)
Q Consensus 513 ~~i~~v~Q~~~--l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalA 590 (1338)
++++|+||+|. ++..|+.||+.++...........++++.++++.++++++.++.| .+||||||||++||
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~--------~~LS~G~~qrv~la 155 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP--------ANLSGGQKQRVAIA 155 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc--------ccCCHHHHHHHHHH
Confidence 67999999984 567899999987632211000111245778999999998888877 68999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHhhcceEEEccCC
Q 000711 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 591 Ral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~~~d~i~~l~~~ 650 (1338)
|||+.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+..||++++|+++
T Consensus 156 ral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G 219 (282)
T PRK13640 156 GILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDG 219 (282)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999988754 389999999999999899999999863
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-36 Score=329.56 Aligned_cols=194 Identities=22% Similarity=0.342 Sum_probs=162.7
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc------c-ccccEEE
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------D-LNKEIFY 517 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~-~~~~i~~ 517 (1338)
|+++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. . .++.++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGYG-KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred CEEeeEEeecC-CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 47899999986 46899999999999999999999999999999999999999999999998541 1 2456999
Q ss_pred EecCCCCCCC-CHHHHhcCCCCCCcccCCCCHHHHHHHHHHc-CCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHcc
Q 000711 518 VPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNV-DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1338)
Q Consensus 518 v~Q~~~l~~~-tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~ 595 (1338)
+||++.++.. |++||+.++..... .....+++.++++.+ ++.+..++.+ .+||||||||++||||+++
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~~ 149 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLA--------GTLSGGEQQMLAIARALMS 149 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCch--------hhCCHHHHHHHHHHHHHhc
Confidence 9999988775 99999987643211 111234556677776 4665555544 6899999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhH-hhcceEEEccC
Q 000711 596 KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDG 649 (1338)
Q Consensus 596 ~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~-~~~d~i~~l~~ 649 (1338)
+|++++|||||++||+.+...+++.+++ .++|+|++||+++.+ ..+|++++|++
T Consensus 150 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 207 (222)
T cd03224 150 RPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLER 207 (222)
T ss_pred CCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeC
Confidence 9999999999999999999999998864 478999999999976 56999999986
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=333.46 Aligned_cols=197 Identities=23% Similarity=0.262 Sum_probs=166.3
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCC-----ccEEEeCCCCc--------cc
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV-----SGHIAKPGVGS--------DL 511 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~-----~G~i~~~~~~~--------~~ 511 (1338)
++++||++.|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+. ..
T Consensus 2 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 2 IEIENLNLFYGE-KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred EEEEEEEEEECC-eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 789999999964 57999999999999999999999999999999999999998 99999998641 12
Q ss_pred cccEEEEecCCCCCCCCHHHHhcCCCCCCcc-cCCCCHHHHHHHHHHcCCc----hHHhcCCCCccccCCCCCChhHHHH
Q 000711 512 NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLE----YLLDRYPPEKEINWGDELSLGEQQR 586 (1338)
Q Consensus 512 ~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~~~~~~g~~LSgGqkQR 586 (1338)
++.++|+||++.++..|++||+.++...... .....++++.++++.+++. +..++.+ .+||||||||
T Consensus 81 ~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LSgG~~qr 152 (247)
T TIGR00972 81 RRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSA--------LGLSGGQQQR 152 (247)
T ss_pred HhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCc--------ccCCHHHHHH
Confidence 4679999999998889999999875321110 0111235677889999997 5555544 6899999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 587 lalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
++|||||+.+|+++||||||++||+.+...+++.+++ .++|+|++||+++.+ ..+|++++|+++
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G 219 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDG 219 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999998865 258999999999976 579999999863
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=338.11 Aligned_cols=198 Identities=25% Similarity=0.380 Sum_probs=167.3
Q ss_pred CcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc---------cccc
Q 000711 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DLNK 513 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~---------~~~~ 513 (1338)
..|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++
T Consensus 6 ~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 6 NLVDMRGVSFTRG-NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred ceEEEeCeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 4699999999985 46899999999999999999999999999999999999999999999998541 1245
Q ss_pred cEEEEecCCCCCCC-CHHHHhcCCCCCCcc-cCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHH
Q 000711 514 EIFYVPQRPYTAVG-TLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1338)
Q Consensus 514 ~i~~v~Q~~~l~~~-tl~eni~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalAR 591 (1338)
.++|+||++.++.. |+.||+.++...... ......+++.++++.+++.+..++.+ .+||||||||++|||
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LSgGq~qrv~lar 156 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMP--------SELSGGMARRAALAR 156 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCCh--------hhCCHHHHHHHHHHH
Confidence 79999999988875 999999875321100 01112345677899999988777765 689999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 592 al~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
||+++|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+. .||++++|++
T Consensus 157 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~ 219 (269)
T PRK11831 157 AIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVAD 219 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEEC
Confidence 99999999999999999999999999888764 2789999999998775 6999999986
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=305.86 Aligned_cols=198 Identities=26% Similarity=0.311 Sum_probs=170.9
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC-----ccccccEEEE
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYV 518 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~-----~~~~~~i~~v 518 (1338)
++++.+++++|++...+++|+||+++.||+++|.||||+||||+||+|++++.|++|.|.++|.| ...+++||.+
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl 80 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL 80 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhccee
Confidence 36889999999875568999999999999999999999999999999999999999999999986 3467899999
Q ss_pred ecCCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCC
Q 000711 519 PQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1338)
Q Consensus 519 ~Q~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p 597 (1338)
+-+.-++. .|++|||.|...-..........++.++.+.+++.+.+++.. .++|-|+|||++|||||+++|
T Consensus 81 ~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv--------~~~S~G~kqkV~iARAlvh~P 152 (245)
T COG4555 81 FGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRV--------GEFSTGMKQKVAIARALVHDP 152 (245)
T ss_pred cCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHH--------hhhchhhHHHHHHHHHHhcCC
Confidence 97666654 699999987532222222234567888999999999988854 589999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHH---ccCCeEEEEecChhhHh-hcceEEEccC
Q 000711 598 KFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 598 ~illLDEpts~LD~~~~~~i~~~l~---~~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
++++||||||+||..+.+.+.+.++ +.|+++|+.||.++.++ .||+++++..
T Consensus 153 ~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~ 208 (245)
T COG4555 153 SILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHK 208 (245)
T ss_pred CeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEec
Confidence 9999999999999999988877654 46999999999999987 8999999986
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-36 Score=342.14 Aligned_cols=200 Identities=24% Similarity=0.253 Sum_probs=165.2
Q ss_pred CcEEEEeEEEEcCCC----CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc---------
Q 000711 443 NYIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------- 509 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~~----~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~--------- 509 (1338)
+.|+++|+++.|++. .++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 569999999999753 2599999999999999999999999999999999999999999999988531
Q ss_pred --cccccEEEEecCC--CCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCc-hHHhcCCCCccccCCCCCChhHH
Q 000711 510 --DLNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQ 584 (1338)
Q Consensus 510 --~~~~~i~~v~Q~~--~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~g~~LSgGqk 584 (1338)
.+++.++|+||+| .++..|++||+.++............+++.++++.+++. ++.++.+ .+||||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~--------~~LS~Gq~ 156 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSP--------FELSGGQK 156 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCCh--------hhCCHHHH
Confidence 2345799999998 456789999998753211100011123466788888884 5655544 68999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 585 QRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
||++|||||+.+|+++||||||++||+.+.+.+++.+++ .|+|+|++||+++.+ +.||++++|+++
T Consensus 157 qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G 227 (289)
T PRK13645 157 RRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEG 227 (289)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999887754 389999999999976 579999999863
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-36 Score=346.25 Aligned_cols=199 Identities=25% Similarity=0.293 Sum_probs=168.5
Q ss_pred CcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC-----ccccccEEE
Q 000711 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFY 517 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~-----~~~~~~i~~ 517 (1338)
..|+++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|
T Consensus 40 ~~i~i~nl~k~y~-~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~ 118 (340)
T PRK13536 40 VAIDLAGVSKSYG-DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGV 118 (340)
T ss_pred eeEEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEE
Confidence 4699999999996 4679999999999999999999999999999999999999999999999965 124567999
Q ss_pred EecCCCCC-CCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccC
Q 000711 518 VPQRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1338)
Q Consensus 518 v~Q~~~l~-~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~ 596 (1338)
+||++.++ ..|++||+.+.............+++.++++.+++.+..++.+ .+||||||||++|||||+++
T Consensus 119 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~--------~~LS~G~kqrv~lA~aL~~~ 190 (340)
T PRK13536 119 VPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARV--------SDLSGGMKRRLTLARALIND 190 (340)
T ss_pred EeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCCh--------hhCCHHHHHHHHHHHHHhcC
Confidence 99999875 5699999975321111000112345667888899988777655 68999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHh-hcceEEEccCC
Q 000711 597 PKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 597 p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
|+++||||||++||+.+...+++.+++ .|+|+|++||+++.+. .||+|++|+++
T Consensus 191 P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G 248 (340)
T PRK13536 191 PQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAG 248 (340)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999998865 4899999999999884 79999999863
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=349.21 Aligned_cols=204 Identities=18% Similarity=0.274 Sum_probs=168.9
Q ss_pred ceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccccCCcccEEEEc
Q 000711 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 1178 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~~lr~~i~~Vp 1178 (1338)
.|+++||++.|++..++|+|+||+|++||.++|+||||||||||+++|.|+.+|++|+|.+||.++......+++|+|||
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 48999999999656779999999999999999999999999999999999999999999999999987643445799999
Q ss_pred CCCCCCC-CCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCCC
Q 000711 1179 QRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 1257 (1338)
Q Consensus 1179 QdP~LF~-GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LS 1257 (1338)
|+|.||. .|++|||.|+.... +. .....+..+.++++.++|.++.++.| .+||
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~----------~~------~~~~~~~~~~~~l~~~gL~~~~~~~~----------~~LS 136 (356)
T PRK11650 83 QNYALYPHMSVRENMAYGLKIR----------GM------PKAEIEERVAEAARILELEPLLDRKP----------RELS 136 (356)
T ss_pred CCccccCCCCHHHHHHhHHhhc----------CC------CHHHHHHHHHHHHHHcCChhHhhCCh----------hhCC
Confidence 9999996 59999998763210 00 00001234566778888866655543 4699
Q ss_pred hhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHH----hcCCeEEEeccCCC-CcccccceEEEecCC
Q 000711 1258 LGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAK----DMGITFVTSSQRPA-LIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1258 gGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~----~~~~TvI~IAHRl~-~i~~~d~~l~l~~g~ 1328 (1338)
||||||+||||||+++|++|+||||||+||..+.+.+.+.++ +.|.|+|.|+|.+. ...++|+++.|.+|+
T Consensus 137 gGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~ 212 (356)
T PRK11650 137 GGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGV 212 (356)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCE
Confidence 999999999999999999999999999999999887766543 34899999999996 667899999997664
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-36 Score=339.28 Aligned_cols=198 Identities=23% Similarity=0.270 Sum_probs=166.3
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc--------cccccE
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------DLNKEI 515 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~--------~~~~~i 515 (1338)
+++++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.+
T Consensus 1 ml~~~~l~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 1 MLATSDLWFRYQ-DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred CeEEEEEEEEcC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 378999999996 46799999999999999999999999999999999999999999999998641 124579
Q ss_pred EEEecCCC--CCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHH
Q 000711 516 FYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1338)
Q Consensus 516 ~~v~Q~~~--l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal 593 (1338)
+|+||+|. ++..|+.+|+.++............+++.++++.+++.++.++.+ .+||||||||++|||||
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrl~laraL 151 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPI--------QCLSHGQKKRVAIAGAL 151 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCc--------hhCCHHHHHHHHHHHHH
Confidence 99999985 566789999987522111000111345677899999988776654 68999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 594 ~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
+.+|+++||||||++||+.+...+.+.+++ .|+|+|++||+++.+ ..+|++++|+++
T Consensus 152 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G 212 (271)
T PRK13638 152 VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQG 212 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999988764 488999999999987 579999999863
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-36 Score=340.91 Aligned_cols=198 Identities=23% Similarity=0.301 Sum_probs=164.6
Q ss_pred EEEEeEEEEcCCC----CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc----------c
Q 000711 445 IEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----------D 510 (1338)
Q Consensus 445 i~~~~v~~~~~~~----~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~----------~ 510 (1338)
++++||++.|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 7899999999753 4799999999999999999999999999999999999999999999998641 1
Q ss_pred ccccEEEEecCC--CCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCc-hHHhcCCCCccccCCCCCChhHHHHH
Q 000711 511 LNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRL 587 (1338)
Q Consensus 511 ~~~~i~~v~Q~~--~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~g~~LSgGqkQRl 587 (1338)
+++.|+|+||+| .++..|++||+.++............+.+.++++.+++. ...++.+ .+||||||||+
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgG~~qrv 154 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNP--------FELSGGQMRRV 154 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCc--------ccCCHHHHHHH
Confidence 345799999998 577889999998753211000011123466788888986 3555544 68999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 588 alARal~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
+|||||+.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+ ..+|++++|+++
T Consensus 155 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G 221 (280)
T PRK13649 155 AIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKG 221 (280)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999998764 489999999999987 479999999863
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=330.29 Aligned_cols=200 Identities=28% Similarity=0.439 Sum_probs=170.6
Q ss_pred EEEEeEEEEcCC--CCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc------cccccEE
Q 000711 445 IEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------DLNKEIF 516 (1338)
Q Consensus 445 i~~~~v~~~~~~--~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~~~~~i~ 516 (1338)
++++|+++.|++ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 468999999875 35799999999999999999999999999999999999999999999998541 2245799
Q ss_pred EEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCcc---ccCCCCCChhHHHHHHHHHHH
Q 000711 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKE---INWGDELSLGEQQRLGMARLF 593 (1338)
Q Consensus 517 ~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~---~~~g~~LSgGqkQRlalARal 593 (1338)
|+||+|.++..|++||+.++... ...+++.+.++..++.++.+.+|.+.. .....+||||||||++||||+
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al 154 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPD------ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARAL 154 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCC------CCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHH
Confidence 99999998889999999886432 123456677778888888777654322 134578999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhHhhcceEEEccCC
Q 000711 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 594 ~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~~~~d~i~~l~~~ 650 (1338)
+.+|+++||||||++||+.+.+.+++.+++ .|+|+|++||+++.+..||++++|+++
T Consensus 155 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G 213 (238)
T cd03249 155 LRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNG 213 (238)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECC
Confidence 999999999999999999999999998865 478999999999998899999999873
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=321.95 Aligned_cols=186 Identities=26% Similarity=0.393 Sum_probs=160.5
Q ss_pred CCcEEEEeEEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC------cccccc
Q 000711 442 ANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKE 514 (1338)
Q Consensus 442 ~~~i~~~~v~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~ 514 (1338)
.+.++++|+++.|++. +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 4 HGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 4579999999999753 589999999999999999999999999999999999999999999999864 123568
Q ss_pred EEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000711 515 IFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1338)
Q Consensus 515 i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1338)
++|+||+|.++.+|++||+.+... ...+++.+.++ +++ +...||||||||++||||++
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~-------~~~~~~~~~l~-------~~~--------~~~~LS~G~~qrv~laral~ 141 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDE-------YSDEEIYGALR-------VSE--------GGLNLSQGQRQLLCLARALL 141 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCC-------CCHHHHHHHhh-------ccC--------CCCcCCHHHHHHHHHHHHHh
Confidence 999999999999999999976421 23344455444 122 23689999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhHhhcceEEEccC
Q 000711 595 HKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 649 (1338)
Q Consensus 595 ~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~~~~d~i~~l~~ 649 (1338)
.+|+++||||||++||+.+.+.+++.+++ .++|+|++||+++.+..+|++++|++
T Consensus 142 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~ 198 (207)
T cd03369 142 KRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDA 198 (207)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEEC
Confidence 99999999999999999999999998875 38899999999999888999999986
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=332.93 Aligned_cols=197 Identities=28% Similarity=0.367 Sum_probs=167.3
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc------cccccEEE
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------DLNKEIFY 517 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~~~~~i~~ 517 (1338)
.++++|+++.|++ +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.++|
T Consensus 2 ~l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 2 MLEARNLSVRLGG-RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred eEEEEeEEEEeCC-eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 4789999999964 6799999999999999999999999999999999999999999999998641 23467999
Q ss_pred EecCCCC-CCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHc--
Q 000711 518 VPQRPYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY-- 594 (1338)
Q Consensus 518 v~Q~~~l-~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~-- 594 (1338)
+||++.+ +..|++||+.++...........++++.++++.+++.+..++.+ .+||||||||++|||||+
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgGe~qrv~la~al~~~ 152 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDY--------PQLSGGEQQRVQLARVLAQL 152 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCc--------ccCCHHHHHHHHHHHHHhcc
Confidence 9999987 66799999987542211101112346788999999988777765 689999999999999999
Q ss_pred ----cCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 595 ----HKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 595 ----~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+. .||++++|++
T Consensus 153 ~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 216 (258)
T PRK13548 153 WEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQ 216 (258)
T ss_pred cccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEEC
Confidence 59999999999999999999998887753 4789999999999875 7999999986
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=334.01 Aligned_cols=211 Identities=23% Similarity=0.273 Sum_probs=165.0
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc-----CCcccE
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSGCGI 1174 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~-----~lr~~i 1174 (1338)
|+++||+++|+..+++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.... ..+.++
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRI 81 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhhe
Confidence 689999999974567999999999999999999999999999999999999999999999999886542 235579
Q ss_pred EEEcCCCCCCC-CCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCccc
Q 000711 1175 FYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 1253 (1338)
Q Consensus 1175 ~~VpQdP~LF~-GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g 1253 (1338)
+||||+|.+|. .|+++|+.++.......... ..+. .....+..+.++++.+++....++ ..
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~--~~~~------~~~~~~~~~~~~l~~~~l~~~~~~----------~~ 143 (243)
T TIGR02315 82 GMIFQHYNLIERLTVLENVLHGRLGYKPTWRS--LLGR------FSEEDKERALSALERVGLADKAYQ----------RA 143 (243)
T ss_pred EEEcCCCcccccccHHHHHhhcccccccchhh--hhcc------ccHHHHHHHHHHHHHcCcHhhhcC----------Cc
Confidence 99999999886 69999997643110000000 0000 001113345667777777443322 13
Q ss_pred CCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCc-ccccceEEEecCC
Q 000711 1254 DILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDGE 1328 (1338)
Q Consensus 1254 ~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i-~~~d~~l~l~~g~ 1328 (1338)
..||||||||++||||++++|++||||||||+||.++.+.+.+.+++ .++|+|+|+|+++.+ +++|+++.|.+|+
T Consensus 144 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~ 223 (243)
T TIGR02315 144 DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGE 223 (243)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCE
Confidence 57999999999999999999999999999999999999888776543 389999999999876 6899999997664
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-36 Score=333.41 Aligned_cols=203 Identities=20% Similarity=0.243 Sum_probs=162.0
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc-----CCcccE
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSGCGI 1174 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~-----~lr~~i 1174 (1338)
|+++||++.|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.++|.++.... ..+.++
T Consensus 1 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 1 IELRGLTKSFGG-RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred CeEEEEEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 578999999964 56999999999999999999999999999999999999999999999999886542 235679
Q ss_pred EEEcCCCCCCCC-CHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCccc
Q 000711 1175 FYVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 1253 (1338)
Q Consensus 1175 ~~VpQdP~LF~G-TIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g 1253 (1338)
+||||+|.+|.+ |+++|+.++..... +. ..+..+..+.++++.+++....++. .
T Consensus 80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~---------~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~ 134 (235)
T cd03261 80 GMLFQSGALFDSLTVFENVAFPLREHT---------RL------SEEEIREIVLEKLEAVGLRGAEDLY----------P 134 (235)
T ss_pred EEEccCcccCCCCcHHHHHHHHHhhcc---------CC------CHHHHHHHHHHHHHHcCCchhhcCC----------h
Confidence 999999999986 99999975311000 00 0000123345566777764433222 2
Q ss_pred CCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCc-ccccceEEEecCC
Q 000711 1254 DILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDGE 1328 (1338)
Q Consensus 1254 ~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i-~~~d~~l~l~~g~ 1328 (1338)
..||||||||++||||++++|++|||||||++||.++.+.+.+.+++ .++|||+|+|+++.+ .++|+++.|.+|+
T Consensus 135 ~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~ 214 (235)
T cd03261 135 AELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGK 214 (235)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCe
Confidence 46999999999999999999999999999999999999888776543 389999999999855 5799999997654
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=325.78 Aligned_cols=204 Identities=18% Similarity=0.279 Sum_probs=167.7
Q ss_pred EEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc------CCcccE
Q 000711 1101 SFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA------GSGCGI 1174 (1338)
Q Consensus 1101 ~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~------~lr~~i 1174 (1338)
...|+.|.||...++++|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.... ..|.++
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 46788899987778999999999999999999999999999999999999999999999999886532 234579
Q ss_pred EEEcCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCc-cc
Q 000711 1175 FYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLN-WE 1253 (1338)
Q Consensus 1175 ~~VpQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~-~g 1253 (1338)
+|+||+|.+|+.|+++||.++....+ ....++++.+++...++..|.|+++..+ ..
T Consensus 82 ~~~~q~~~~~~~t~~~nl~~~~~~~~-----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 138 (218)
T cd03290 82 AYAAQKPWLLNATVEENITFGSPFNK-----------------------QRYKAVTDACSLQPDIDLLPFGDQTEIGERG 138 (218)
T ss_pred EEEcCCCccccccHHHHHhhcCcCCH-----------------------HHHHHHHHHhCcHHHHHhCcCccccCcccCC
Confidence 99999999999999999986532111 1122334455555555556677777653 45
Q ss_pred CCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHH--HH---HhcCCeEEEeccCCCCcccccceEEEecC
Q 000711 1254 DILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYR--LA---KDMGITFVTSSQRPALIPFHSLELRLIDG 1327 (1338)
Q Consensus 1254 ~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~--~~---~~~~~TvI~IAHRl~~i~~~d~~l~l~~g 1327 (1338)
..||||||||++||||++++|++|||||||++||..+.+.+.+ ++ +..+.|+|+++|+.+.+..+|+++.|.+|
T Consensus 139 ~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G 217 (218)
T cd03290 139 INLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217 (218)
T ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCC
Confidence 7899999999999999999999999999999999998876654 33 33589999999999988999999999765
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=337.51 Aligned_cols=199 Identities=26% Similarity=0.329 Sum_probs=168.9
Q ss_pred CcEEEEeEEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc------cccccE
Q 000711 443 NYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------DLNKEI 515 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~~~~~i 515 (1338)
..++++|+++.|++. +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.+
T Consensus 6 ~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred ceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 469999999999754 4699999999999999999999999999999999999999999999999641 235679
Q ss_pred EEEecCCC--CCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHH
Q 000711 516 FYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1338)
Q Consensus 516 ~~v~Q~~~--l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal 593 (1338)
+|+||+|. ++..|+++|+.++............+++.++++.+++.++.++.+ .+||||||||++||||+
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~laral 157 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEP--------NALSGGQKQRVAIAGVL 157 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCc--------ccCCHHHHHHHHHHHHH
Confidence 99999984 556689999988642211001112346778899999988777655 68999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHhhcceEEEccC
Q 000711 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDG 649 (1338)
Q Consensus 594 ~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~~~d~i~~l~~ 649 (1338)
+.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+..+|++++|++
T Consensus 158 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~ 217 (269)
T PRK13648 158 ALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNK 217 (269)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEEC
Confidence 999999999999999999999999888764 37899999999998888999999986
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=338.61 Aligned_cols=195 Identities=27% Similarity=0.325 Sum_probs=164.7
Q ss_pred EEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc------cc----cccE
Q 000711 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------DL----NKEI 515 (1338)
Q Consensus 446 ~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~~----~~~i 515 (1338)
.++|+++.|. ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+ ++++
T Consensus 26 ~~~~~~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 26 SKEEILKKTG-QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhhcC-CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 5678888874 56799999999999999999999999999999999999999999999998641 11 3579
Q ss_pred EEEecCCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000711 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1338)
Q Consensus 516 ~~v~Q~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1338)
+|+||++.++. .|++||+.++...........++++.++++.+++.+..++.+ .+||||||||++||||++
T Consensus 105 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~Gq~qrv~lAral~ 176 (269)
T cd03294 105 SMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP--------DELSGGMQQRVGLARALA 176 (269)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc--------ccCCHHHHHHHHHHHHHh
Confidence 99999998874 699999987532110001112356788999999998888876 689999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhH-hhcceEEEccC
Q 000711 595 HKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1338)
Q Consensus 595 ~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~-~~~d~i~~l~~ 649 (1338)
++|+++||||||++||+.+.+.+++.+++ .|+|+|++||+++.+ ..+|++++|++
T Consensus 177 ~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~ 236 (269)
T cd03294 177 VDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKD 236 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 99999999999999999999999998754 379999999999876 57999999986
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=329.14 Aligned_cols=207 Identities=25% Similarity=0.365 Sum_probs=167.2
Q ss_pred CCceEEeeeEEeCCCc--cccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc--CCcc
Q 000711 1097 QDSISFSKLDIITPSQ--KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGC 1172 (1338)
Q Consensus 1097 ~g~I~f~nV~f~yp~~--~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~--~lr~ 1172 (1338)
.|.|+++|+++.|++. .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.++|.++.... ..+.
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 5789999999999753 47999999999999999999999999999999999999999999999999887542 3345
Q ss_pred cEEEEcCCCCCCCCCHHHHhcCCCch--HHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC
Q 000711 1173 GIFYVPQRPYTCLGTLRDQIIYPLSR--EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 1250 (1338)
Q Consensus 1173 ~i~~VpQdP~LF~GTIReNL~~p~~~--~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~ 1250 (1338)
+++|+||+|.+|++|+++|+.++... .++..+. .+..++...++..+.|+++..
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~------------------------~~~~~~~~~l~~l~~gl~~~~ 144 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEA------------------------AQKAHAHSFISELASGYDTEV 144 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHH------------------------HHHcCcHHHHHhccccccchh
Confidence 79999999999999999999864321 1111111 111122223333333555443
Q ss_pred -cccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCcccccceEEEecC
Q 000711 1251 -NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDG 1327 (1338)
Q Consensus 1251 -~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i~~~d~~l~l~~g 1327 (1338)
....+||||||||++||||++++|+++||||||++||+++.+.+.+.+++ .++|+|+|+|+++.+..+|+++.|.+|
T Consensus 145 ~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g 224 (226)
T cd03248 145 GEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGG 224 (226)
T ss_pred hcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCC
Confidence 23578999999999999999999999999999999999999988877654 368999999999988889999999765
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-33 Score=302.51 Aligned_cols=442 Identities=17% Similarity=0.165 Sum_probs=260.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCC-CCCCchhHHHccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000711 165 KYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLC 243 (1338)
Q Consensus 165 ~~l~~~l~~~~R~~lt~~l~~~~~~~~~~~~~~~~d~-~~~n~~qRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~ 243 (1338)
......++.+ ...++|.+..++++.-|+.-+++ .......+++.|++.++-.++.+ .....+.+..+ .+....
T Consensus 69 ~lg~t~~gq~----~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~s~l-p~~~qa~il~l-~s~aYL 142 (546)
T COG4615 69 QLGLTTLGQH----FIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSRL-PELVQAIILTL-GSAAYL 142 (546)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehHhhh-HHHHHHHHHHH-HHHHHH
Confidence 3334444444 45555666666666666665543 24577889999999876333322 22222222111 111112
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHH
Q 000711 244 SYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRH 323 (1338)
Q Consensus 244 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~r~~~~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~ 323 (1338)
.|.+|...+++.+.+++..+.-.....+.-+..+...+.|.+.......+.++.+..+.. ++..+. ..++.|..--++
T Consensus 143 ayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~-r~R~~~-~h~~~~~~~a~~ 220 (546)
T COG4615 143 AYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLN-RERAEY-VHNNLYIPDAQE 220 (546)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheec-hHHHHH-HHhhhcCcchHH
Confidence 245777665554444333332222222233333444445555544445555565555543 333221 111222211111
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhHhcccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000711 324 MRV-VLHDHWWFGMIQDFLLKYLGATVAVILI--IEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISS 400 (1338)
Q Consensus 324 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 400 (1338)
.++ ..+.+.+......+.+..+...++.+++ ..+.|.. +- .+..+. . .+.-+-.++.++....
T Consensus 221 ~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~w~s-------t~-~a~tiv-----l-vlLflr~pL~s~vgil 286 (546)
T COG4615 221 YRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLGWAS-------TN-VAATIV-----L-VLLFLRTPLLSAVGIL 286 (546)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch-------hh-HHHHHH-----H-HHHHHhhHHHHHHhhh
Confidence 111 1111111101111111112222232211 1122211 10 110011 1 1111224566666667
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCcCCCCcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCC
Q 000711 401 RRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPN 480 (1338)
Q Consensus 401 ~~l~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~s 480 (1338)
..+..+..++++|.++-..++... .... ...++-..++++||.|.|++...-+..+|++|++||++.|+|.|
T Consensus 287 P~l~~AqvA~~kiakle~~~~~a~--~~~~------q~~p~~~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~N 358 (546)
T COG4615 287 PTLLTAQVAFNKIAKLELAPYKAD--FPRP------QAFPDWKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGN 358 (546)
T ss_pred hHHHHHHHHHHHHHHhhcCCcccc--CCCC------CcCCcccceeeeeeeeccCcccceecceeeEEecCcEEEEECCC
Confidence 778888899999988754222111 0000 01112346999999999988777889999999999999999999
Q ss_pred CCcHHHHHHHHcCCCCCCccEEEeCCCC------ccccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHH
Q 000711 481 GSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVEL 554 (1338)
Q Consensus 481 GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~ 554 (1338)
||||||++++|.|+|.|++|+|.+||.. +++|+-++-|+-|.|+|+.++ -+.. ..+.+.+...
T Consensus 359 GsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll-----~~e~------~as~q~i~~~ 427 (546)
T COG4615 359 GSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL-----GPEG------KASPQLIEKW 427 (546)
T ss_pred CCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh-----CCcc------CCChHHHHHH
Confidence 9999999999999999999999999964 345666777777888776433 2211 1455677777
Q ss_pred HHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH----HHccCCeEEE
Q 000711 555 LKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAK----VRAMGTSCIT 630 (1338)
Q Consensus 555 l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~----l~~~~~t~i~ 630 (1338)
|+...+.+...-.. +.- ....||-|||+|+|+--|++-+-||+++||=-+--||.-++.+|+. +++.|+||+.
T Consensus 428 LqrLel~~ktsl~d-~~f--s~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~a 504 (546)
T COG4615 428 LQRLELAHKTSLND-GRF--SNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFA 504 (546)
T ss_pred HHHHHHhhhhcccC-Ccc--cccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEE
Confidence 77776665433211 100 1247999999999999999999999999999999999999998885 4678999999
Q ss_pred EecChhhHhhcceEEEccCC
Q 000711 631 ISHRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 631 itH~~~~~~~~d~i~~l~~~ 650 (1338)
||||-....++||++.++++
T Consensus 505 IsHDd~YF~~ADrll~~~~G 524 (546)
T COG4615 505 ISHDDHYFIHADRLLEMRNG 524 (546)
T ss_pred EecCchhhhhHHHHHHHhcC
Confidence 99999999999999999874
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=333.94 Aligned_cols=199 Identities=27% Similarity=0.350 Sum_probs=169.1
Q ss_pred CcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC------ccccccEE
Q 000711 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 516 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~ 516 (1338)
..++++||++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++
T Consensus 10 ~~l~i~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 10 TTFALRNVSFRVP-GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred ceEEEeeEEEEEC-CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 4699999999996 4689999999999999999999999999999999999999999999999864 12346799
Q ss_pred EEecCCCCCC-CCHHHHhcCCCCCCc----ccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHH
Q 000711 517 YVPQRPYTAV-GTLRDQLIYPLTSDQ----EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1338)
Q Consensus 517 ~v~Q~~~l~~-~tl~eni~~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalAR 591 (1338)
|+||++.++. .|+.||+.++..... ......++++.++++.+++.+..++.+ .+||||||||++|||
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~lar 160 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV--------DSLSGGERQRAWIAM 160 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc--------ccCCHHHHHHHHHHH
Confidence 9999976654 599999987632110 001123456788999999988888766 689999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 592 al~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
|++.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+ ..+|++++|+++
T Consensus 161 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G 224 (265)
T PRK10575 161 LVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGG 224 (265)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999998888754 389999999999987 579999999863
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=330.79 Aligned_cols=204 Identities=22% Similarity=0.283 Sum_probs=163.9
Q ss_pred ceEEeeeEEeCCCc---cccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccccC-----C
Q 000711 1099 SISFSKLDIITPSQ---KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAG-----S 1170 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~---~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~~-----l 1170 (1338)
-++++||++.|++. .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++..... .
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 48999999999752 579999999999999999999999999999999999999999999999999876521 2
Q ss_pred -cccEEEEcCCCCCCCC-CHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcc
Q 000711 1171 -GCGIFYVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDA 1248 (1338)
Q Consensus 1171 -r~~i~~VpQdP~LF~G-TIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt 1248 (1338)
+++++||||+|.+|++ |+++|+.++... .+.. .+..++.+.++++.+++.+..++.
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~----------~~~~------~~~~~~~~~~~l~~~gl~~~~~~~------ 142 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLI----------GKKK------PAEINSRALEMLAAVGLEHRANHR------ 142 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHh----------cCCC------HHHHHHHHHHHHHHcCCchhhhCC------
Confidence 2569999999999875 999999653100 0000 000123355667777764433222
Q ss_pred cCcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCcccccceEEE
Q 000711 1249 NLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALIPFHSLELRL 1324 (1338)
Q Consensus 1249 ~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i~~~d~~l~l 1324 (1338)
..+||||||||++||||++++|++|||||||++||+++.+.+.+.+++ .|+|+|+|+|+++.+...|+++.|
T Consensus 143 ----~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l 218 (233)
T PRK11629 143 ----PSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEM 218 (233)
T ss_pred ----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEE
Confidence 346999999999999999999999999999999999999888776543 489999999999988888899999
Q ss_pred ecCC
Q 000711 1325 IDGE 1328 (1338)
Q Consensus 1325 ~~g~ 1328 (1338)
.+|+
T Consensus 219 ~~G~ 222 (233)
T PRK11629 219 RDGR 222 (233)
T ss_pred ECCE
Confidence 7653
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=338.80 Aligned_cols=205 Identities=22% Similarity=0.305 Sum_probs=174.0
Q ss_pred CceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccccCCcccEEEE
Q 000711 1098 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYV 1177 (1338)
Q Consensus 1098 g~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~~lr~~i~~V 1177 (1338)
..|+|+||+..|. +..+++|+||+|++||.+.+.|||||||||++++|.||..|++|+|.+||.||..+...++.|++|
T Consensus 4 ~~l~i~~v~k~yg-~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~V 82 (352)
T COG3842 4 PALEIRNVSKSFG-DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMV 82 (352)
T ss_pred ceEEEEeeeeecC-CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhccccee
Confidence 4799999999996 778999999999999999999999999999999999999999999999999999996555689999
Q ss_pred cCCCCCCC-CCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCC
Q 000711 1178 PQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDIL 1256 (1338)
Q Consensus 1178 pQdP~LF~-GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~L 1256 (1338)
+|+.-||+ -||++||.||...... ...+..+..+.++++.++|..+-++.| .+|
T Consensus 83 FQ~YALFPHltV~~NVafGLk~~~~---------------~~~~~i~~rv~e~L~lV~L~~~~~R~p----------~qL 137 (352)
T COG3842 83 FQSYALFPHMTVEENVAFGLKVRKK---------------LKKAEIKARVEEALELVGLEGFADRKP----------HQL 137 (352)
T ss_pred ecCcccCCCCcHHHHhhhhhhhcCC---------------CCHHHHHHHHHHHHHHcCchhhhhhCh----------hhh
Confidence 99999996 6999999998641000 000012345677888888877666654 579
Q ss_pred ChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHH----HHhcCCeEEEeccCC-CCcccccceEEEecCC
Q 000711 1257 SLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRL----AKDMGITFVTSSQRP-ALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1257 SgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~----~~~~~~TvI~IAHRl-~~i~~~d~~l~l~~g~ 1328 (1338)
|||||||+|+||||..+|++|+||||-||||....+.++.- .++.|.|.|.|+|.- +-+...|++.++.+|+
T Consensus 138 SGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~ 214 (352)
T COG3842 138 SGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGR 214 (352)
T ss_pred ChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCc
Confidence 99999999999999999999999999999999987766543 334699999999998 5889999999997664
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=337.71 Aligned_cols=199 Identities=23% Similarity=0.302 Sum_probs=169.2
Q ss_pred cEEEEeEEEEcCCC--CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc------cccccE
Q 000711 444 YIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------DLNKEI 515 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~~~~~i 515 (1338)
.++++||++.|++. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .+++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 58999999999742 4699999999999999999999999999999999999999999999998641 245679
Q ss_pred EEEecCCC--CCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHH
Q 000711 516 FYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1338)
Q Consensus 516 ~~v~Q~~~--l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal 593 (1338)
+|+||+|. ++..|+.|||.++............+++.++++.+++.++.++.+ ..||||||||++|||||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~lAraL 155 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREP--------ARLSGGQKQRVAVAGII 155 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCc--------ccCCHHHHHHHHHHHHH
Confidence 99999983 667899999987532111000111245678899999988877765 68999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHhhcceEEEccCC
Q 000711 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 594 ~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~~~d~i~~l~~~ 650 (1338)
+.+|+++||||||++||+.+.+.+++.+++ .|+|+|++||+++.+..+|++++|+++
T Consensus 156 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G 216 (277)
T PRK13642 156 ALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAG 216 (277)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECC
Confidence 999999999999999999999999988753 389999999999998889999999863
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=331.15 Aligned_cols=196 Identities=27% Similarity=0.392 Sum_probs=166.9
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc--------cccccEE
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------DLNKEIF 516 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~--------~~~~~i~ 516 (1338)
++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.++
T Consensus 2 l~~~~l~~~~~-~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 2 IEFKNVSKHFG-PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred EEEEeEEEEEC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 78999999986 46899999999999999999999999999999999999999999999998641 2345799
Q ss_pred EEecCCCCCC-CCHHHHhcCCCCC-CcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000711 517 YVPQRPYTAV-GTLRDQLIYPLTS-DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1338)
Q Consensus 517 ~v~Q~~~l~~-~tl~eni~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1338)
|+||++.++. .|++||+.++... ........++++.++++.+++++..++.+ ..||||||||++||||++
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~~qrv~la~al~ 152 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYP--------SELSGGQQQRVAIARALA 152 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcCh--------hhcCHHHHHHHHHHHHHh
Confidence 9999998775 6999999875311 00001112346778899999988877765 689999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 595 ~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
++|++++|||||++||+.+.+.+.+.+++ .|+|+|++||+++.+. .||++++|++
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 211 (240)
T PRK09493 153 VKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDK 211 (240)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999988754 4899999999999885 6999999986
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=326.92 Aligned_cols=197 Identities=25% Similarity=0.433 Sum_probs=168.8
Q ss_pred EEEEeEEEEcCCC---CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc---------ccc
Q 000711 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DLN 512 (1338)
Q Consensus 445 i~~~~v~~~~~~~---~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~---------~~~ 512 (1338)
++++|+++.|+++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 6899999998642 6799999999999999999999999999999999999999999999998641 134
Q ss_pred ccEEEEecCCCCCC-CCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHH
Q 000711 513 KEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1338)
Q Consensus 513 ~~i~~v~Q~~~l~~-~tl~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalA 590 (1338)
+.++|+||+|.++. .|+.||+.++....... .....+++.++++.+++.+..++.+ .+||||||||++||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~lS~G~~qrv~la 153 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP--------HNLSGGQKQRVAIA 153 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh--------hhCCHHHHHHHHHH
Confidence 67999999998876 69999998753211100 0112346788999999988888876 68999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHhhcceEEEccC
Q 000711 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDG 649 (1338)
Q Consensus 591 Ral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~~~d~i~~l~~ 649 (1338)
||++.+|+++||||||++||+.+.+.+++.+++ .++|+|++||+++....||++++|++
T Consensus 154 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~ 216 (220)
T TIGR02982 154 RALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMED 216 (220)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEEC
Confidence 999999999999999999999999998888754 38999999999998889999999975
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=330.98 Aligned_cols=206 Identities=21% Similarity=0.285 Sum_probs=163.9
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccccCCcccEEEEcC
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 1179 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~~lr~~i~~VpQ 1179 (1338)
|+++||++.|++ +++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.++......+++++||||
T Consensus 3 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 81 (239)
T cd03296 3 IEVRNVSKRFGD-FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQ 81 (239)
T ss_pred EEEEeEEEEECC-EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEec
Confidence 789999999975 5799999999999999999999999999999999999999999999999988765444567999999
Q ss_pred CCCCCC-CCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCCCh
Q 000711 1180 RPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 1258 (1338)
Q Consensus 1180 dP~LF~-GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSg 1258 (1338)
+|.+|. .|+++|+.++.... +..... .....++.+.++++.+++....++. ..+||+
T Consensus 82 ~~~~~~~~tv~e~l~~~~~~~----------~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~LS~ 139 (239)
T cd03296 82 HYALFRHMTVFDNVAFGLRVK----------PRSERP--PEAEIRAKVHELLKLVQLDWLADRY----------PAQLSG 139 (239)
T ss_pred CCcccCCCCHHHHHhhhhhhc----------cccccC--CHHHHHHHHHHHHHHcCChhhhhcC----------hhhCCH
Confidence 999986 59999997642100 000000 0000123345666777664433322 346999
Q ss_pred hHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCC-cccccceEEEecCC
Q 000711 1259 GEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPAL-IPFHSLELRLIDGE 1328 (1338)
Q Consensus 1259 GQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~-i~~~d~~l~l~~g~ 1328 (1338)
|||||++|||||+++|++|||||||++||+++.+.+.+.+++ .|+|+|+|+|+++. ..++|+++.|.+|+
T Consensus 140 G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~ 214 (239)
T cd03296 140 GQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGR 214 (239)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 999999999999999999999999999999999888776643 38999999999985 56799999997654
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=326.97 Aligned_cols=202 Identities=21% Similarity=0.256 Sum_probs=161.9
Q ss_pred eEEeeeEEeCCCc---cccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccccC------C
Q 000711 1100 ISFSKLDIITPSQ---KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAG------S 1170 (1338)
Q Consensus 1100 I~f~nV~f~yp~~---~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~~------l 1170 (1338)
|+++||++.|++. .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.++|.++..... .
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 6899999999752 579999999999999999999999999999999999999999999999998876521 1
Q ss_pred cccEEEEcCCCCCCC-CCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCccc
Q 000711 1171 GCGIFYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDAN 1249 (1338)
Q Consensus 1171 r~~i~~VpQdP~LF~-GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~ 1249 (1338)
+.+++||||+|.+|. .|++||+.++... .+.. .....+.+.++++.+++.+...+.
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~----------~~~~------~~~~~~~~~~~l~~~~l~~~~~~~------- 138 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLI----------GKKS------VKEAKERAYEMLEKVGLEHRINHR------- 138 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHh----------cCCC------HHHHHHHHHHHHHHcCChhhhhCC-------
Confidence 257999999999996 5999999653100 0000 000122345566666664433222
Q ss_pred CcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCcccccceEEEe
Q 000711 1250 LNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALIPFHSLELRLI 1325 (1338)
Q Consensus 1250 ~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i~~~d~~l~l~ 1325 (1338)
...||||||||++||||++++|++|||||||++||.++.+.+.+.+++ .++|+|+|+|+++.+..+|+++.|.
T Consensus 139 ---~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~ 215 (221)
T TIGR02211 139 ---PSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMK 215 (221)
T ss_pred ---hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEe
Confidence 346999999999999999999999999999999999999888776542 4899999999999888889999997
Q ss_pred cC
Q 000711 1326 DG 1327 (1338)
Q Consensus 1326 ~g 1327 (1338)
+|
T Consensus 216 ~G 217 (221)
T TIGR02211 216 DG 217 (221)
T ss_pred CC
Confidence 65
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=329.78 Aligned_cols=198 Identities=25% Similarity=0.340 Sum_probs=168.4
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc-c------ccccEE
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-D------LNKEIF 516 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~-~------~~~~i~ 516 (1338)
.++++|+++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. . .++.++
T Consensus 2 ~i~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 2 ILYLEGLSVSFDG-FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred eEEEEeeEEEcCC-eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 4789999999964 6799999999999999999999999999999999999999999999998641 1 234699
Q ss_pred EEecCCCCCCC-CHHHHhcCCCCCCcc--------cCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHH
Q 000711 517 YVPQRPYTAVG-TLRDQLIYPLTSDQE--------VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRL 587 (1338)
Q Consensus 517 ~v~Q~~~l~~~-tl~eni~~~~~~~~~--------~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRl 587 (1338)
|+||++.++.+ |++||+.++...... .....++++.++++.+++++..++.+ ..||||||||+
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~Ge~qrv 152 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA--------GLLSHGQKQWL 152 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh--------hhCCHHHHHHH
Confidence 99999988876 999999875321100 00112456788899999987776654 68999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhHh-hcceEEEccCC
Q 000711 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 588 alARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
+||||++++|++++|||||++||+.+.+.+++.+++ .++|+|++||+++.+. .||++++++++
T Consensus 153 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g 218 (242)
T TIGR03411 153 EIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQG 218 (242)
T ss_pred HHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999998875 3689999999999885 69999999863
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-36 Score=294.93 Aligned_cols=204 Identities=18% Similarity=0.233 Sum_probs=168.0
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccccCCcccEEEEcC
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 1179 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~~lr~~i~~VpQ 1179 (1338)
|.+++|.|.|...+. .+++.|++||+|||+||||||||||++++.||..|.+|+|.|+|+|.....-.++-++++.|
T Consensus 2 l~L~~V~~~y~~~~~---~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQ 78 (231)
T COG3840 2 LALDDVRFSYGHLPM---RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQ 78 (231)
T ss_pred ccccceEEeeCcceE---EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhh
Confidence 457889998865543 56889999999999999999999999999999999999999999999887555557999999
Q ss_pred CCCCCC-CCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCCCh
Q 000711 1180 RPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 1258 (1338)
Q Consensus 1180 dP~LF~-GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSg 1258 (1338)
|--||. -|+++|+..+.... +| +.....+.+..++..+||..+.+++| .+|||
T Consensus 79 EnNLFaHLtV~qNigLGl~P~------Lk----------L~a~~r~~v~~aa~~vGl~~~~~RLP----------~~LSG 132 (231)
T COG3840 79 ENNLFAHLTVAQNIGLGLSPG------LK----------LNAEQREKVEAAAAQVGLAGFLKRLP----------GELSG 132 (231)
T ss_pred ccccchhhhhhhhhcccCCcc------cc----------cCHHHHHHHHHHHHHhChhhHhhhCc----------cccCc
Confidence 999996 59999998754310 00 00011234566778899988888876 46999
Q ss_pred hHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHH----HHHHhcCCeEEEeccCCC-CcccccceEEEecCCCCeE
Q 000711 1259 GEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLY----RLAKDMGITFVTSSQRPA-LIPFHSLELRLIDGEGNWE 1332 (1338)
Q Consensus 1259 GQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~----~~~~~~~~TvI~IAHRl~-~i~~~d~~l~l~~g~g~~~ 1332 (1338)
|||||+|+||+++|+-+||+||||-||||+.....+. +++.+++.|+++|+|.++ ..+..++++.+++|.=.|.
T Consensus 133 GqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~ 211 (231)
T COG3840 133 GQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQ 211 (231)
T ss_pred hHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEee
Confidence 9999999999999999999999999999999866543 455678999999999995 7888999999988876663
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=327.19 Aligned_cols=203 Identities=23% Similarity=0.278 Sum_probs=163.4
Q ss_pred eEEeeeEEeCCCc---cccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc-cCCcccEE
Q 000711 1100 ISFSKLDIITPSQ---KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-AGSGCGIF 1175 (1338)
Q Consensus 1100 I~f~nV~f~yp~~---~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~-~~lr~~i~ 1175 (1338)
|+++||++.|++. +++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.++|.++... ...+++++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 6899999999753 2799999999999999999999999999999999999999999999999988653 23356799
Q ss_pred EEcCCCCCCCC-CHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccC
Q 000711 1176 YVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWED 1254 (1338)
Q Consensus 1176 ~VpQdP~LF~G-TIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~ 1254 (1338)
|+||+|.+|.+ |++||+.++... .+.. ....+..+.++++.+++.+..++. ..
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~----------~~~~------~~~~~~~~~~~l~~~~l~~~~~~~----------~~ 135 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGL----------YGLK------GDELTARLEELADRLGMEELLDRR----------VG 135 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHH----------cCCC------HHHHHHHHHHHHHHcCCHHHHhhh----------hh
Confidence 99999999985 999999642110 0000 000123455667777775443332 34
Q ss_pred CCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCCC-cccccceEEEecCC
Q 000711 1255 ILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPAL-IPFHSLELRLIDGE 1328 (1338)
Q Consensus 1255 ~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~~-i~~~d~~l~l~~g~ 1328 (1338)
.||||||||++||||++++|++|||||||++||..+.+.+.+.+++ .++|+|+|+|+++. .+++|+++.|.+|+
T Consensus 136 ~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 213 (218)
T cd03266 136 GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGR 213 (218)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 6999999999999999999999999999999999999888776643 48999999999975 56799999997663
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=332.33 Aligned_cols=211 Identities=26% Similarity=0.295 Sum_probs=165.1
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc-----CCcccE
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSGCGI 1174 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~-----~lr~~i 1174 (1338)
|+++||+++|++.+++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.... ..+.++
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 578999999975467999999999999999999999999999999999999999999999999887542 234579
Q ss_pred EEEcCCCCCCC-CCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCccc
Q 000711 1175 FYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 1253 (1338)
Q Consensus 1175 ~~VpQdP~LF~-GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g 1253 (1338)
+||||+|.+|. .|+++|+.++......... ...+. .....++.+.++++.+++.....+ ..
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~--~~~~~------~~~~~~~~~~~~l~~~~l~~~~~~----------~~ 142 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWR--SLFGL------FPKEEKQRALAALERVGLLDKAYQ----------RA 142 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchhhh--hhccc------CcHHHHHHHHHHHHHcCChhhhCC----------Cc
Confidence 99999999887 6999999754311000000 00000 001113345667777776433322 23
Q ss_pred CCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCcc-cccceEEEecCC
Q 000711 1254 DILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALIP-FHSLELRLIDGE 1328 (1338)
Q Consensus 1254 ~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i~-~~d~~l~l~~g~ 1328 (1338)
.+||||||||++||||++++|++||||||||+||+.+.+.+.+.+++ .|+|+|+|+|+++.+. ++|++++|.+|+
T Consensus 143 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~ 222 (241)
T cd03256 143 DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGR 222 (241)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 57999999999999999999999999999999999999888776543 3899999999998776 899999997764
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=332.81 Aligned_cols=199 Identities=21% Similarity=0.233 Sum_probs=166.1
Q ss_pred CCcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCC-----CCccEEEeCCCCc-------
Q 000711 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS------- 509 (1338)
Q Consensus 442 ~~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~-----~~~G~i~~~~~~~------- 509 (1338)
.+.++++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 11 ~~~l~~~~l~~~~~~-~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 11 PSKIQVRNLNFYYGK-FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred CceEEEEEEEEEeCC-eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 467999999999964 579999999999999999999999999999999999986 5899999998541
Q ss_pred -cccccEEEEecCCCCCCCCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCCch----HHhcCCCCccccCCCCCChhH
Q 000711 510 -DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGE 583 (1338)
Q Consensus 510 -~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~g~~LSgGq 583 (1338)
.++++++|+||+|.++..|++||+.++....... ....++++.++++.+++.+ ..++. ..+|||||
T Consensus 90 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LS~Gq 161 (260)
T PRK10744 90 ALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQS--------GYSLSGGQ 161 (260)
T ss_pred HHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcC--------CCCCCHHH
Confidence 2356799999999988899999998753211000 0112356778899998753 33332 36899999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhH-hhcceEEEccC
Q 000711 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 649 (1338)
Q Consensus 584 kQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~-~~~d~i~~l~~ 649 (1338)
|||++|||||+.+|+++||||||++||+.+++.+.+.+++ .++|+|++||+++.+ ..+|++++|++
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 230 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYL 230 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999998875 378999999999987 47999999986
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=325.67 Aligned_cols=194 Identities=21% Similarity=0.317 Sum_probs=165.5
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc----cccccEEEEec
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----DLNKEIFYVPQ 520 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~----~~~~~i~~v~Q 520 (1338)
++++||++.|++ .+ .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++|+||
T Consensus 2 l~~~~l~~~~~~-~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 78 (232)
T PRK10771 2 LKLTDITWLYHH-LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78 (232)
T ss_pred eEEEEEEEEECC-cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEec
Confidence 789999999963 33 399999999999999999999999999999999999999999998651 12357999999
Q ss_pred CCCCCCC-CHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCE
Q 000711 521 RPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1338)
Q Consensus 521 ~~~l~~~-tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~i 599 (1338)
++.++.+ |++||+.++...........++++.++++.+++++..++.+ ..||||||||++||||++++|++
T Consensus 79 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~~~p~l 150 (232)
T PRK10771 79 ENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP--------GQLSGGQRQRVALARCLVREQPI 150 (232)
T ss_pred ccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc--------ccCCHHHHHHHHHHHHHhcCCCE
Confidence 9988875 99999987632110011123456889999999998888877 68999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 600 llLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
+||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+. .+|++++|++
T Consensus 151 llLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 205 (232)
T PRK10771 151 LLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVAD 205 (232)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 999999999999999999888754 3789999999999875 6999999986
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=330.63 Aligned_cols=197 Identities=25% Similarity=0.359 Sum_probs=166.7
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc------------cc
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------------DL 511 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~------------~~ 511 (1338)
.++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..
T Consensus 2 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 2 SIQLNGINCFYG-AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEEeeEEEEC-CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 378999999996 46899999999999999999999999999999999999999999999998641 12
Q ss_pred cccEEEEecCCCCCCC-CHHHHhcCCC-CCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHH
Q 000711 512 NKEIFYVPQRPYTAVG-TLRDQLIYPL-TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1338)
Q Consensus 512 ~~~i~~v~Q~~~l~~~-tl~eni~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlal 589 (1338)
++.++|+||+|.++.+ |++||+.+.. ...........+++.++++.++++++.++.+ .+||||||||++|
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~~qrv~l 152 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFP--------LHLSGGQQQRVAI 152 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh--------hhCCHHHHHHHHH
Confidence 4579999999988764 9999997421 1000000112345778899999988888766 6899999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 590 ARal~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
|||++.+|+++||||||++||+.+...+.+.+++ .|+|+|++||+++.+. .+|++++|++
T Consensus 153 aral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~ 216 (242)
T PRK11124 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMEN 216 (242)
T ss_pred HHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 9999999999999999999999999999988764 4899999999999885 6999999986
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=337.25 Aligned_cols=204 Identities=20% Similarity=0.292 Sum_probs=166.7
Q ss_pred ceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEEE
Q 000711 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFY 1176 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~~ 1176 (1338)
-|+++||++.|++..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++... ..++.+++|
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 83 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence 489999999998666799999999999999999999999999999999999999999999999988754 233457999
Q ss_pred EcCCC--CCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccC
Q 000711 1177 VPQRP--YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWED 1254 (1338)
Q Consensus 1177 VpQdP--~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~ 1254 (1338)
|||+| .+|..|+++|+.++... .+.. ....+..+.++++.++|....++.+ .
T Consensus 84 v~q~~~~~~~~~tv~e~l~~~~~~----------~~~~------~~~~~~~~~~~l~~~~L~~~~~~~~----------~ 137 (274)
T PRK13647 84 VFQDPDDQVFSSTVWDDVAFGPVN----------MGLD------KDEVERRVEEALKAVRMWDFRDKPP----------Y 137 (274)
T ss_pred EecChhhhhccCcHHHHHHhhHHH----------cCCC------HHHHHHHHHHHHHHCCCHHHhcCCh----------h
Confidence 99999 67889999999764210 0000 0001233556677777754443332 4
Q ss_pred CCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCCCc-ccccceEEEecCC
Q 000711 1255 ILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLELRLIDGE 1328 (1338)
Q Consensus 1255 ~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~~i-~~~d~~l~l~~g~ 1328 (1338)
.||||||||++|||||+++|++|||||||++||+.+.+.+.+++++ .|+|+|+|+|+++.+ +++|+++.|.+|+
T Consensus 138 ~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~ 215 (274)
T PRK13647 138 HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGR 215 (274)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999887776543 489999999999876 7899999997765
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=333.37 Aligned_cols=198 Identities=25% Similarity=0.344 Sum_probs=166.1
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc--------------
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------------- 509 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~-------------- 509 (1338)
.++++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 3 AIEVKNLVKKFH-GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred cEEEeceEEEEC-CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 489999999996 45799999999999999999999999999999999999999999999988531
Q ss_pred cccccEEEEecCCCCCC-CCHHHHhcCCCCC-CcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHH
Q 000711 510 DLNKEIFYVPQRPYTAV-GTLRDQLIYPLTS-DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRL 587 (1338)
Q Consensus 510 ~~~~~i~~v~Q~~~l~~-~tl~eni~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRl 587 (1338)
.+++.++|+||++.++. .|++||+.++... .........+++.++++.+++.+..++.+ .+||||||||+
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~Gq~qrv 153 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYP--------RRLSGGQQQRV 153 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCCh--------hhCChHHHHHH
Confidence 13457999999998775 6999999864210 00001112345678889999987766654 68999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHh-hcceEEEccCC
Q 000711 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 588 alARal~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
+||||++.+|+++||||||++||+.+.+.+++.+++ .|+|+|++||+++.+. .||++++|+++
T Consensus 154 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G 220 (250)
T PRK11264 154 AIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQG 220 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 999999999999999999999999999999987764 4899999999999875 69999999863
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=346.13 Aligned_cols=204 Identities=21% Similarity=0.271 Sum_probs=168.6
Q ss_pred CceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccccCCcccEEEE
Q 000711 1098 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYV 1177 (1338)
Q Consensus 1098 g~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~~lr~~i~~V 1177 (1338)
..|+++||++.|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++......+++|+||
T Consensus 5 ~~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 83 (351)
T PRK11432 5 NFVVLKNITKRFGS-NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV 83 (351)
T ss_pred cEEEEEeEEEEECC-eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 46999999999964 66999999999999999999999999999999999999999999999999998765445679999
Q ss_pred cCCCCCCCC-CHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCC
Q 000711 1178 PQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDIL 1256 (1338)
Q Consensus 1178 pQdP~LF~G-TIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~L 1256 (1338)
+|+|.||+. |++|||.|+.... +. .....++.+.++++.+++.++.++. ...|
T Consensus 84 fQ~~~lfp~~tv~eNi~~~l~~~----------~~------~~~~~~~~v~~~l~~~gl~~~~~r~----------~~~L 137 (351)
T PRK11432 84 FQSYALFPHMSLGENVGYGLKML----------GV------PKEERKQRVKEALELVDLAGFEDRY----------VDQI 137 (351)
T ss_pred eCCcccCCCCCHHHHHHHHHhHc----------CC------CHHHHHHHHHHHHHHcCCchhhcCC----------hhhC
Confidence 999999975 9999998763200 00 0000123456677777776554443 3569
Q ss_pred ChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHH----hcCCeEEEeccCCCC-cccccceEEEecCC
Q 000711 1257 SLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAK----DMGITFVTSSQRPAL-IPFHSLELRLIDGE 1328 (1338)
Q Consensus 1257 SgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~----~~~~TvI~IAHRl~~-i~~~d~~l~l~~g~ 1328 (1338)
|||||||+||||||+++|++|+||||||+||..+.+.+.+.++ +.|+|+|.|+|..+. ..++|++++|.+|+
T Consensus 138 SgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~ 214 (351)
T PRK11432 138 SGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGK 214 (351)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999988776553 348999999999974 58899999997664
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=296.72 Aligned_cols=205 Identities=21% Similarity=0.246 Sum_probs=172.0
Q ss_pred cEEEEeEEEEcCC-CCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC-ccccccEEEEecC
Q 000711 444 YIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQR 521 (1338)
Q Consensus 444 ~i~~~~v~~~~~~-~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~-~~~~~~i~~v~Q~ 521 (1338)
.+..++++..|++ .+.+++|+|++|.+||.+.++||||||||||+++++|+.+|..|+|.++|.. ..-...-|.|+|+
T Consensus 3 ~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~ 82 (259)
T COG4525 3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQN 82 (259)
T ss_pred eeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEecc
Confidence 3567788888864 2459999999999999999999999999999999999999999999999863 1112346999999
Q ss_pred CCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEE
Q 000711 522 PYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 600 (1338)
Q Consensus 522 ~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~il 600 (1338)
+-+++ .|+.||+.|+.......+....+...+.+..+||+++-++++ -+||||||||+.|||||..+|++|
T Consensus 83 ~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i--------~qLSGGmrQRvGiARALa~eP~~L 154 (259)
T COG4525 83 EALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYI--------WQLSGGMRQRVGIARALAVEPQLL 154 (259)
T ss_pred CccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccce--------EeecchHHHHHHHHHHhhcCcceE
Confidence 87655 699999999876543323334456678899999998887776 589999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHH----ccCCeEEEEecChhhHh-hcceEEEccCCCceEEe
Q 000711 601 ILDECTSAVTTDMEERFCAKVR----AMGTSCITISHRPALVA-FHDVVLSLDGEGEWRVH 656 (1338)
Q Consensus 601 lLDEpts~LD~~~~~~i~~~l~----~~~~t~i~itH~~~~~~-~~d~i~~l~~~g~~~~~ 656 (1338)
+||||++|||.-+++++++.|- +.|+.+++|||+.+..- .++++++|+++.+..++
T Consensus 155 lLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~ 215 (259)
T COG4525 155 LLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVE 215 (259)
T ss_pred eecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeE
Confidence 9999999999999999988774 45999999999998754 68999999986555544
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=342.32 Aligned_cols=199 Identities=29% Similarity=0.383 Sum_probs=166.5
Q ss_pred CcEEEEeEEEEcCC------------CCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc-
Q 000711 443 NYIEFSGVKVVTPT------------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS- 509 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~------------~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~- 509 (1338)
..++++||++.|+. ..++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 46899999998863 24699999999999999999999999999999999999999999999999651
Q ss_pred --------cccccEEEEecCC--CCC-CCCHHHHhcCCCCCC--cccCCCCHHHHHHHHHHcCCc-hHHhcCCCCccccC
Q 000711 510 --------DLNKEIFYVPQRP--YTA-VGTLRDQLIYPLTSD--QEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINW 575 (1338)
Q Consensus 510 --------~~~~~i~~v~Q~~--~l~-~~tl~eni~~~~~~~--~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~ 575 (1338)
.++++++||+|+| .++ ..|+.|||.++.... ........+.+.++++.+++. +..++.|
T Consensus 87 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p------- 159 (331)
T PRK15079 87 GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYP------- 159 (331)
T ss_pred cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCc-------
Confidence 1356899999998 354 579999997643210 000111234567889999994 5667766
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 576 GDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 576 g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
.+||||||||++|||||+.+|+++|+||||++||+.++..+.+.+++ .|.|+|+|||+++.+. .||+|++|.+
T Consensus 160 -~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 160 -HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 68999999999999999999999999999999999999999887754 3899999999999986 6999999986
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=346.92 Aligned_cols=185 Identities=26% Similarity=0.333 Sum_probs=157.9
Q ss_pred CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc------c----ccccEEEEecCCCCCC-
Q 000711 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------D----LNKEIFYVPQRPYTAV- 526 (1338)
Q Consensus 458 ~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~----~~~~i~~v~Q~~~l~~- 526 (1338)
.++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. . .+++++|+||++.++.
T Consensus 41 ~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~ 120 (400)
T PRK10070 41 SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPH 120 (400)
T ss_pred eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCC
Confidence 3589999999999999999999999999999999999999999999998641 1 1357999999998876
Q ss_pred CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCC
Q 000711 527 GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606 (1338)
Q Consensus 527 ~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~illLDEpt 606 (1338)
.|++||+.++...........++++.++++.+++.++.++.| .+||||||||++|||||+++|+++||||||
T Consensus 121 ~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~--------~~LSgGq~QRv~LArAL~~~P~iLLLDEPt 192 (400)
T PRK10070 121 MTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP--------DELSGGMRQRVGLARALAINPDILLMDEAF 192 (400)
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 599999998642111001112356788999999998888877 689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHc----cCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 607 SAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 607 s~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
++||+.+.+.+++.+++ .|+|+|++||+++.+ +.+|++++|+++
T Consensus 193 s~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G 241 (400)
T PRK10070 193 SALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNG 241 (400)
T ss_pred ccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECC
Confidence 99999999999988753 489999999999876 579999999863
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=324.83 Aligned_cols=198 Identities=24% Similarity=0.261 Sum_probs=162.6
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccccCCcccEEEEcC
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 1179 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~~lr~~i~~VpQ 1179 (1338)
|+++||++.|++ .++|+|+||+|++||.++|+||||||||||+++|.|+.+|++|+|.++|.++......+++++||||
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (208)
T cd03268 1 LKTNDLTKTYGK-KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIE 79 (208)
T ss_pred CEEEEEEEEECC-eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecC
Confidence 578999999864 5799999999999999999999999999999999999999999999999988654333457999999
Q ss_pred CCCCC-CCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCCCh
Q 000711 1180 RPYTC-LGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 1258 (1338)
Q Consensus 1180 dP~LF-~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSg 1258 (1338)
+|.+| ..|++||+.++... .+ ..+..+.++++.+++....++. ...|||
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~----------~~----------~~~~~~~~~l~~~~l~~~~~~~----------~~~LS~ 129 (208)
T cd03268 80 APGFYPNLTARENLRLLARL----------LG----------IRKKRIDEVLDVVGLKDSAKKK----------VKGFSL 129 (208)
T ss_pred CCccCccCcHHHHHHHHHHh----------cC----------CcHHHHHHHHHHcCCHHHHhhh----------HhhCCH
Confidence 99888 57999999653110 00 0123455666777775444332 246999
Q ss_pred hHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCCCc-ccccceEEEecCC
Q 000711 1259 GEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLELRLIDGE 1328 (1338)
Q Consensus 1259 GQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~~i-~~~d~~l~l~~g~ 1328 (1338)
|||||++||||++++|+++||||||++||.++.+.+.+.+++ .++|+|+|+|+++.+ .++|+++.|.+|+
T Consensus 130 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~ 203 (208)
T cd03268 130 GMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGK 203 (208)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCE
Confidence 999999999999999999999999999999999888776643 489999999999866 6799999997653
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=332.29 Aligned_cols=199 Identities=23% Similarity=0.257 Sum_probs=165.5
Q ss_pred CcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCC-----CccEEEeCCCCc--------
Q 000711 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS-------- 509 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~-----~~G~i~~~~~~~-------- 509 (1338)
..++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 6 ~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 6 AIIETENLNLFYT-DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred ceEEEeeeEEEeC-CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 4799999999986 46799999999999999999999999999999999999997 599999998541
Q ss_pred cccccEEEEecCCCCCCCCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCCch----HHhcCCCCccccCCCCCChhHH
Q 000711 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 584 (1338)
Q Consensus 510 ~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~g~~LSgGqk 584 (1338)
..++.++|+||++.++..|++||+.++....... ....++++.++++.+++.+ ..++. ..+||||||
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LSgG~~ 156 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTN--------ALSLSGGQQ 156 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCC--------cccCCHHHH
Confidence 2356799999999988899999998763211100 0112356778888888743 23332 368999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 585 QRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
||++|||||+.+|+++||||||++||+.+...+++.+++ .++|+|++||+++.+ ..+|++++|+++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G 225 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNG 225 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999998865 378999999999986 569999999863
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=340.71 Aligned_cols=197 Identities=22% Similarity=0.329 Sum_probs=168.3
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc-----cccccEEEEe
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-----DLNKEIFYVP 519 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~-----~~~~~i~~v~ 519 (1338)
++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. ..++.++|+|
T Consensus 3 l~~~~l~~~~~-~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~ 81 (301)
T TIGR03522 3 IRVSSLTKLYG-TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLP 81 (301)
T ss_pred EEEEEEEEEEC-CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEec
Confidence 78999999996 46799999999999999999999999999999999999999999999999641 2356799999
Q ss_pred cCCCCCCC-CHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCC
Q 000711 520 QRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1338)
Q Consensus 520 Q~~~l~~~-tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ 598 (1338)
|+|.++.. |+.||+.+.............+++.++++.+++.+..++.+ ..||||||||++|||||+++|+
T Consensus 82 q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~~qrv~la~al~~~p~ 153 (301)
T TIGR03522 82 EHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKI--------GQLSKGYRQRVGLAQALIHDPK 153 (301)
T ss_pred CCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCch--------hhCCHHHHHHHHHHHHHhcCCC
Confidence 99988865 99999976422110000112356788999999998877755 6899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHcc--CCeEEEEecChhhHh-hcceEEEccCC
Q 000711 599 FAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 599 illLDEpts~LD~~~~~~i~~~l~~~--~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
++||||||++||+.+.+.+++.+++. ++|+|++||+++.+. .||++++|+++
T Consensus 154 lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G 208 (301)
T TIGR03522 154 VLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKG 208 (301)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999988753 799999999999765 69999999863
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=337.73 Aligned_cols=204 Identities=25% Similarity=0.327 Sum_probs=165.9
Q ss_pred ceEEeeeEEeCCC--ccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccE
Q 000711 1099 SISFSKLDIITPS--QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGI 1174 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~--~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i 1174 (1338)
.|+++||++.|++ .+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++... ...++++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 4899999999974 35699999999999999999999999999999999999999999999999998754 2345579
Q ss_pred EEEcCCCC--CCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcc
Q 000711 1175 FYVPQRPY--TCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNW 1252 (1338)
Q Consensus 1175 ~~VpQdP~--LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~ 1252 (1338)
+||||+|. ++..|+++||.++... .+. .++..+..+.++++.++|.+..++.
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~----------~~~------~~~~~~~~~~~~l~~~gL~~~~~~~---------- 137 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLEN----------KGI------PHEEMKERVNEALELVGMQDFKERE---------- 137 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHh----------CCC------CHHHHHHHHHHHHHHCCCHhHhhCC----------
Confidence 99999993 5677999999764210 000 0000123456677777776544433
Q ss_pred cCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1253 EDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1253 g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
..+||||||||++||||++++|++|||||||++||+.+.+.+.+.+++ .|+|+|+|+|+++.+.++|++++|.+|+
T Consensus 138 ~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~ 217 (279)
T PRK13650 138 PARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQ 217 (279)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCE
Confidence 247999999999999999999999999999999999999887776532 3899999999998888999999997664
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=332.47 Aligned_cols=199 Identities=21% Similarity=0.263 Sum_probs=167.8
Q ss_pred CcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc-------------
Q 000711 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------------- 509 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~------------- 509 (1338)
+.++++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (257)
T PRK10619 4 NKLNVIDLHKRYG-EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVA 82 (257)
T ss_pred ccEEEeeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccc
Confidence 5699999999996 46899999999999999999999999999999999999999999999998531
Q ss_pred ------cccccEEEEecCCCCCC-CCHHHHhcCCCC-CCcccCCCCHHHHHHHHHHcCCchHH-hcCCCCccccCCCCCC
Q 000711 510 ------DLNKEIFYVPQRPYTAV-GTLRDQLIYPLT-SDQEVEPLTHGGMVELLKNVDLEYLL-DRYPPEKEINWGDELS 580 (1338)
Q Consensus 510 ------~~~~~i~~v~Q~~~l~~-~tl~eni~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~~~g~~LS 580 (1338)
..++.++|+||++.++. .|++||+.++.. .........++++.++++.+++.+.. ++.+ .+||
T Consensus 83 ~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--------~~LS 154 (257)
T PRK10619 83 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYP--------VHLS 154 (257)
T ss_pred cchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCc--------ccCC
Confidence 12457999999998886 599999986421 00000111245677889999998764 4443 6899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHh-hcceEEEccCC
Q 000711 581 LGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 581 gGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
||||||++|||||+++|+++||||||++||+.+.+.+.+.+++ .|+|+|+|||+++.+. .||++++++++
T Consensus 155 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G 228 (257)
T PRK10619 155 GGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQG 228 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 9999999999999999999999999999999999999988764 4899999999999887 59999999863
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=325.47 Aligned_cols=200 Identities=28% Similarity=0.412 Sum_probs=158.7
Q ss_pred EEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccccCCcccEEEEcCC
Q 000711 1101 SFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQR 1180 (1338)
Q Consensus 1101 ~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~~lr~~i~~VpQd 1180 (1338)
+++||++.|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.. .+.+++||||+
T Consensus 1 ~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~---~~~~i~~v~q~ 76 (213)
T cd03235 1 EVEDLTVSYGG-HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEK---ERKRIGYVPQR 76 (213)
T ss_pred CcccceeEECC-EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHH---HHhheEEeccc
Confidence 36899998865 569999999999999999999999999999999999999999999999988752 34579999999
Q ss_pred CCC---CCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCCC
Q 000711 1181 PYT---CLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 1257 (1338)
Q Consensus 1181 P~L---F~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LS 1257 (1338)
|.+ |..|++||+.++...... ..+ ......++.+.++++.+++....++. ..+||
T Consensus 77 ~~~~~~~~~tv~e~l~~~~~~~~~------~~~------~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~LS 134 (213)
T cd03235 77 RSIDRDFPISVRDVVLMGLYGHKG------LFR------RLSKADKAKVDEALERVGLSELADRQ----------IGELS 134 (213)
T ss_pred cccccCCCCcHHHHHHhccccccc------ccc------CCCHHHHHHHHHHHHHcCCHHHHhCC----------cccCC
Confidence 987 568999999764321000 000 00000123456677777775443322 34799
Q ss_pred hhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCCCc-ccccceEEEec
Q 000711 1258 LGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLELRLID 1326 (1338)
Q Consensus 1258 gGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~~i-~~~d~~l~l~~ 1326 (1338)
||||||++||||++++|++|||||||++||+++.+.+.+.+++ .++|+|+|+|+++.+ +++|+++.|.+
T Consensus 135 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~ 207 (213)
T cd03235 135 GGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNR 207 (213)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcC
Confidence 9999999999999999999999999999999999887776543 489999999999866 67899999954
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=331.95 Aligned_cols=197 Identities=27% Similarity=0.349 Sum_probs=167.1
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc---------------
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------------- 509 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~--------------- 509 (1338)
|+++||++.|+ ++++++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 1 i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRFG-ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEeC-CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 47899999996 46899999999999999999999999999999999999999999999998541
Q ss_pred ----cccccEEEEecCCCCCC-CCHHHHhcCCCCCC-cccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhH
Q 000711 510 ----DLNKEIFYVPQRPYTAV-GTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGE 583 (1338)
Q Consensus 510 ----~~~~~i~~v~Q~~~l~~-~tl~eni~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGq 583 (1338)
.+++.++|++|++.++. .|+.||+.++.... .......++++.++++.+++.+..++.+ .+|||||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~ 151 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMP--------AQLSGGQ 151 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcCh--------hhcCHHH
Confidence 12467999999998775 79999998742110 0001112356788999999988887766 6899999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 584 kQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
|||++|||||+++|+++||||||++||+.++..+++.+++ .|+|+|++||+++.+ ..+|++++|+++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G 223 (252)
T TIGR03005 152 QQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKG 223 (252)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 9999999999999999999999999999999999888764 389999999999987 579999999863
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=332.28 Aligned_cols=203 Identities=21% Similarity=0.239 Sum_probs=165.5
Q ss_pred CcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCC-----CCccEEEeCCCCc--------
Q 000711 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS-------- 509 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~-----~~~G~i~~~~~~~-------- 509 (1338)
..|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 5 ~~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 5 PKMEARGLSFFYG-DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred cEEEEeeeEEEEC-CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 4699999999996 4679999999999999999999999999999999999974 6899999998641
Q ss_pred cccccEEEEecCCCCCCCCHHHHhcCCCCCCcc-cCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHH
Q 000711 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1338)
Q Consensus 510 ~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRla 588 (1338)
.+++.++|+||++.++..|++||+.++...... ......+++.++++.+++.+.+.... .....+||||||||++
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----~~~~~~LSgGq~qrv~ 159 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRL----HESALGLSGGQQQRLC 159 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHh----hCCcccCCHHHHHHHH
Confidence 234679999999988888999999875321100 00112456778899999864322110 0113689999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 589 lARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
|||||+.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+ ..+|++++|+++
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G 224 (253)
T PRK14242 160 IARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMG 224 (253)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999998875 378999999999987 579999999863
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=327.15 Aligned_cols=203 Identities=18% Similarity=0.238 Sum_probs=162.5
Q ss_pred eEEeeeEEeCCCc-cccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc-cCCcccEEEE
Q 000711 1100 ISFSKLDIITPSQ-KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-AGSGCGIFYV 1177 (1338)
Q Consensus 1100 I~f~nV~f~yp~~-~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~-~~lr~~i~~V 1177 (1338)
|+++||++.|++. +++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.++... ...+.+++||
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 5789999999753 6799999999999999999999999999999999999999999999999988653 2334579999
Q ss_pred cCCCCCC-CCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCC
Q 000711 1178 PQRPYTC-LGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDIL 1256 (1338)
Q Consensus 1178 pQdP~LF-~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~L 1256 (1338)
||+|.+| ..|+++|+.++... .+.. .....+.+.++++.++|....+. . ..+|
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~----------~~~~------~~~~~~~~~~~l~~~~l~~~~~~-------~---~~~L 134 (220)
T cd03263 81 PQFDALFDELTVREHLRFYARL----------KGLP------KSEIKEEVELLLRVLGLTDKANK-------R---ARTL 134 (220)
T ss_pred cCcCCccccCCHHHHHHHHHHH----------cCCC------HHHHHHHHHHHHHHcCCHHHHhC-------h---hhhC
Confidence 9999998 57999999653100 0000 00012234566676666433222 1 2469
Q ss_pred ChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCc-ccccceEEEecCC
Q 000711 1257 SLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALI-PFHSLELRLIDGE 1328 (1338)
Q Consensus 1257 SgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i-~~~d~~l~l~~g~ 1328 (1338)
|+|||||++||||++++|+++||||||++||+.+.+.+.+.+++ .++|+|+++|+++.+ +++|+++.|.+|+
T Consensus 135 S~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~ 209 (220)
T cd03263 135 SGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGK 209 (220)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCE
Confidence 99999999999999999999999999999999999888777653 368999999999866 5799999997664
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=337.93 Aligned_cols=203 Identities=22% Similarity=0.243 Sum_probs=163.5
Q ss_pred eEEeeeEEeCCCc----cccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc----CCc
Q 000711 1100 ISFSKLDIITPSQ----KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA----GSG 1171 (1338)
Q Consensus 1100 I~f~nV~f~yp~~----~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~----~lr 1171 (1338)
|+++||++.|++. +++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.... ..+
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 7899999999752 47999999999999999999999999999999999999999999999999987532 335
Q ss_pred ccEEEEcCCC--CCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCch--hhhhhhcccCc
Q 000711 1172 CGIFYVPQRP--YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS--YLLEREEVGWD 1247 (1338)
Q Consensus 1172 ~~i~~VpQdP--~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~--~~i~~~~~Gld 1247 (1338)
.+++||||+| .+|..|+++||.++... .+.. ++...+.+.++++.++|. ++.++
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~----------~~~~------~~~~~~~~~~~l~~~gL~~~~~~~~------ 140 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPIN----------LGLS------EEEIENRVKRAMNIVGLDYEDYKDK------ 140 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHH----------CCCC------HHHHHHHHHHHHHHcCCCchhhccC------
Confidence 6899999999 57889999999753110 0000 000122345667777763 22211
Q ss_pred ccCcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCc-ccccceE
Q 000711 1248 ANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLEL 1322 (1338)
Q Consensus 1248 t~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i-~~~d~~l 1322 (1338)
....||||||||++|||||+.+|++|||||||++||+.+...+.+++++ .|+|||+|+|+++.+ .++|+++
T Consensus 141 ----~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~ 216 (287)
T PRK13637 141 ----SPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRII 216 (287)
T ss_pred ----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 2357999999999999999999999999999999999999888776543 389999999999865 7899999
Q ss_pred EEecCC
Q 000711 1323 RLIDGE 1328 (1338)
Q Consensus 1323 ~l~~g~ 1328 (1338)
.|.+|+
T Consensus 217 ~l~~G~ 222 (287)
T PRK13637 217 VMNKGK 222 (287)
T ss_pred EEECCE
Confidence 997765
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=324.26 Aligned_cols=202 Identities=20% Similarity=0.287 Sum_probs=161.8
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccccCCcccEEEEcC
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 1179 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~~lr~~i~~VpQ 1179 (1338)
|+++||+++|++ +++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++......+.+++|+||
T Consensus 1 i~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q 79 (213)
T cd03301 1 VELENVTKRFGN-VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQ 79 (213)
T ss_pred CEEEeeEEEECC-eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEec
Confidence 578999999865 5799999999999999999999999999999999999999999999999988765434457999999
Q ss_pred CCCCCC-CCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCCCh
Q 000711 1180 RPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 1258 (1338)
Q Consensus 1180 dP~LF~-GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSg 1258 (1338)
+|.+|. .|+++|+.++... .+. ..+..++.+.++++.+++....+.. ...|||
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~----------~~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~LS~ 133 (213)
T cd03301 80 NYALYPHMTVYDNIAFGLKL----------RKV------PKDEIDERVREVAELLQIEHLLDRK----------PKQLSG 133 (213)
T ss_pred ChhhccCCCHHHHHHHHHHh----------cCC------CHHHHHHHHHHHHHHcCCHHHHhCC----------hhhCCH
Confidence 999985 6999999754110 000 0000122345566666664433322 246999
Q ss_pred hHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCc-ccccceEEEecCC
Q 000711 1259 GEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDGE 1328 (1338)
Q Consensus 1259 GQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i-~~~d~~l~l~~g~ 1328 (1338)
|||||++||||++++|+++||||||++||+++.+.+.+.+++ .++|+|+|+|+++.+ .++|+++.|.+|+
T Consensus 134 G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~ 208 (213)
T cd03301 134 GQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQ 208 (213)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCE
Confidence 999999999999999999999999999999999888776543 389999999999754 5689999997653
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=325.58 Aligned_cols=201 Identities=22% Similarity=0.226 Sum_probs=162.5
Q ss_pred eEEeeeEEeCCCc---cccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccccCCcccEEE
Q 000711 1100 ISFSKLDIITPSQ---KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176 (1338)
Q Consensus 1100 I~f~nV~f~yp~~---~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~~lr~~i~~ 1176 (1338)
|+++|+++.|++. +++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.++|.++.. .+.+++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~---~~~~i~~ 77 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG---PGPDRGY 77 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc---ccCcEEE
Confidence 5789999999752 679999999999999999999999999999999999999999999999988763 3457999
Q ss_pred EcCCCCCCC-CCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCC
Q 000711 1177 VPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 1255 (1338)
Q Consensus 1177 VpQdP~LF~-GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~ 1255 (1338)
|||+|.+|. .|+++|+.++... .+.. ....++.+.++++.+++.+...+. ...
T Consensus 78 v~q~~~~~~~~tv~e~l~~~~~~----------~~~~------~~~~~~~~~~~l~~~~l~~~~~~~----------~~~ 131 (220)
T cd03293 78 VFQQDALLPWLTVLDNVALGLEL----------QGVP------KAEARERAEELLELVGLSGFENAY----------PHQ 131 (220)
T ss_pred EecccccccCCCHHHHHHHHHHH----------cCCC------HHHHHHHHHHHHHHcCChhhhhCC----------ccc
Confidence 999999987 6999999753110 0000 000123456677777775443332 246
Q ss_pred CChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCC-CcccccceEEEecCCC
Q 000711 1256 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPA-LIPFHSLELRLIDGEG 1329 (1338)
Q Consensus 1256 LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~-~i~~~d~~l~l~~g~g 1329 (1338)
||||||||++||||++++|+++||||||++||+++.+.+.+.+++ .++|+|+|+|+++ ..+++|+++.|.+|+|
T Consensus 132 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G 210 (220)
T cd03293 132 LSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPG 210 (220)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCC
Confidence 999999999999999999999999999999999999888776643 3899999999998 4578999999974345
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=330.33 Aligned_cols=198 Identities=21% Similarity=0.325 Sum_probs=168.7
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC------ccccccEEE
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~ 517 (1338)
.++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 2 ~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 2 TLRTENLTVGYG-TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEEeEEEEEC-CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 478999999996 4689999999999999999999999999999999999999999999999864 123457999
Q ss_pred EecCCCCCCC-CHHHHhcCCCCCC----cccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHH
Q 000711 518 VPQRPYTAVG-TLRDQLIYPLTSD----QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1338)
Q Consensus 518 v~Q~~~l~~~-tl~eni~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARa 592 (1338)
+||++.++.+ |+.||+.++.... .......++++.++++.+++.+..++.+ ..||||||||++||||
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~lara 152 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL--------TDLSGGQRQRAFLAMV 152 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc--------ccCCHHHHHHHHHHHH
Confidence 9999988765 9999998753210 0001122456788899999988877765 6899999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHh-hcceEEEccCC
Q 000711 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 593 l~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
++.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+. .+|++++|+++
T Consensus 153 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G 214 (255)
T PRK11231 153 LAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANG 214 (255)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECC
Confidence 9999999999999999999999999988764 4899999999999874 79999999863
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=333.23 Aligned_cols=198 Identities=29% Similarity=0.369 Sum_probs=164.7
Q ss_pred cEEEEeEEEEcCC--------CCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc------
Q 000711 444 YIEFSGVKVVTPT--------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------ 509 (1338)
Q Consensus 444 ~i~~~~v~~~~~~--------~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~------ 509 (1338)
.++++||++.|++ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 4789999999963 36899999999999999999999999999999999999999999999998641
Q ss_pred ---cccccEEEEecCCC--CC-CCCHHHHhcCCCCCC-cccCCCCHHHHHHHHHHcCCc-hHHhcCCCCccccCCCCCCh
Q 000711 510 ---DLNKEIFYVPQRPY--TA-VGTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSL 581 (1338)
Q Consensus 510 ---~~~~~i~~v~Q~~~--l~-~~tl~eni~~~~~~~-~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~g~~LSg 581 (1338)
.+++.++|+||+|. ++ ..|++||+.++.... .......++++.++++.+++. +..++.+ ..|||
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--------~~LSg 153 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLP--------RQLSG 153 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCCh--------hhCCH
Confidence 13457999999983 43 479999997643210 000112345678899999996 5555544 68999
Q ss_pred hHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 582 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 582 GqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
|||||++||||++++|+++||||||++||+.+++.+.+.+++ .|+|+|++||+++.+. .+|++++|++
T Consensus 154 Ge~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~ 226 (265)
T TIGR02769 154 GQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDK 226 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeC
Confidence 999999999999999999999999999999999998888754 2899999999999886 7999999986
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=329.31 Aligned_cols=201 Identities=21% Similarity=0.227 Sum_probs=166.0
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCC---CCccEEEeCCCCc------ccccc
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP---LVSGHIAKPGVGS------DLNKE 514 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~---~~~G~i~~~~~~~------~~~~~ 514 (1338)
.++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+. ..++.
T Consensus 2 ~~~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 2 IAKTTNLNLFYG-KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80 (246)
T ss_pred ceeeeeeEEEEC-CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence 478999999996 4689999999999999999999999999999999999984 6999999998651 23567
Q ss_pred EEEEecCCCCCCCCHHHHhcCCCCCCccc--CCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHH
Q 000711 515 IFYVPQRPYTAVGTLRDQLIYPLTSDQEV--EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1338)
Q Consensus 515 i~~v~Q~~~l~~~tl~eni~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARa 592 (1338)
++|+||+|.++..|++||+.++....... ....++++.++++.+++.+.+.... .....+||||||||++||||
T Consensus 81 i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----~~~~~~LS~G~~qrv~lara 156 (246)
T PRK14269 81 VGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKL----KQNALALSGGQQQRLCIARA 156 (246)
T ss_pred EEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHh----cCCcccCCHHHHHHHHHHHH
Confidence 99999999999899999998753211100 0122346778899999964432211 01236899999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhH-hhcceEEEccC
Q 000711 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 649 (1338)
Q Consensus 593 l~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~-~~~d~i~~l~~ 649 (1338)
++++|++++|||||++||+.+...+.+.+++ .++|+|++||+++.+ ..+|++++|++
T Consensus 157 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~ 216 (246)
T PRK14269 157 LAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHL 216 (246)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEEC
Confidence 9999999999999999999999999998865 489999999999976 57999999986
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=320.87 Aligned_cols=195 Identities=21% Similarity=0.292 Sum_probs=162.1
Q ss_pred CCCCCCCCceEEeeeEEeCCCc-cccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc-
Q 000711 1091 WNSTDYQDSISFSKLDIITPSQ-KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA- 1168 (1338)
Q Consensus 1091 wp~~~~~g~I~f~nV~f~yp~~-~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~- 1168 (1338)
||. .+.|+++|+++.|++. .++++|+||+|++||.++|+|+||||||||+++|.|+++|.+|+|.+||.++....
T Consensus 1 ~~~---~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~ 77 (207)
T cd03369 1 WPE---HGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPL 77 (207)
T ss_pred CCC---CCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCH
Confidence 676 5789999999999753 57999999999999999999999999999999999999999999999999886542
Q ss_pred -CCcccEEEEcCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCc
Q 000711 1169 -GSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWD 1247 (1338)
Q Consensus 1169 -~lr~~i~~VpQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gld 1247 (1338)
..+.+|+||||+|.+|++|+++|+.+..... +..+.++++ + +
T Consensus 78 ~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~~~-----------------------~~~~~~~l~---~-----------~ 120 (207)
T cd03369 78 EDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYS-----------------------DEEIYGALR---V-----------S 120 (207)
T ss_pred HHHHhhEEEEecCCcccCccHHHHhcccCCCC-----------------------HHHHHHHhh---c-----------c
Confidence 2355799999999999999999996421110 111222221 1 1
Q ss_pred ccCcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCcccccceEEEe
Q 000711 1248 ANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLI 1325 (1338)
Q Consensus 1248 t~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i~~~d~~l~l~ 1325 (1338)
.+...||||||||++||||++++|+++||||||++||+++.+.+.+.+++ .++|+|+|+|+++.+..+|+++.|.
T Consensus 121 ---~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~ 197 (207)
T cd03369 121 ---EGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMD 197 (207)
T ss_pred ---CCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEE
Confidence 12357999999999999999999999999999999999999888877654 3899999999999877799999997
Q ss_pred cCC
Q 000711 1326 DGE 1328 (1338)
Q Consensus 1326 ~g~ 1328 (1338)
+|+
T Consensus 198 ~g~ 200 (207)
T cd03369 198 AGE 200 (207)
T ss_pred CCE
Confidence 653
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=328.15 Aligned_cols=207 Identities=21% Similarity=0.310 Sum_probs=169.6
Q ss_pred eEEeeeEEeCCCc-cccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc--CCcccEEE
Q 000711 1100 ISFSKLDIITPSQ-KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFY 1176 (1338)
Q Consensus 1100 I~f~nV~f~yp~~-~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~--~lr~~i~~ 1176 (1338)
|+++|+++.|++. .++++|+||++++||.++|+||||||||||+++|.|+++|++|+|.++|.++.... ..+++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 5789999999754 47999999999999999999999999999999999999999999999998886542 23557999
Q ss_pred EcCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCc-ccCC
Q 000711 1177 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLN-WEDI 1255 (1338)
Q Consensus 1177 VpQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~-~g~~ 1255 (1338)
+||+|.+|..|++||+.++..... ...+.+.++..++...++..+.|+++..+ ....
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 138 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGAT----------------------REEVEEAARAANAHEFIMELPEGYDTVIGERGVK 138 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCC----------------------HHHHHHHHHHcCcHHHHHhcccCcceeeccCCCc
Confidence 999999999999999976432100 01112223334444555555556666553 4578
Q ss_pred CChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1256 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1256 LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
||+|||||++||||++++|+++||||||++||.++.+.+.+.+++ .+.|+|+++|.++.+..+|+++.|.+|.
T Consensus 139 LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~ 213 (234)
T cd03251 139 LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGK 213 (234)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCe
Confidence 999999999999999999999999999999999999988877654 4899999999999888899999997765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=331.84 Aligned_cols=199 Identities=23% Similarity=0.258 Sum_probs=164.6
Q ss_pred CCcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCC-----CccEEEeCCCCc-------
Q 000711 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS------- 509 (1338)
Q Consensus 442 ~~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~-----~~G~i~~~~~~~------- 509 (1338)
...++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 10 ~~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 10 QPQIKVENLNLWYG-EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred ceeEEEeeeEEEeC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 34799999999985 46799999999999999999999999999999999999985 899999998541
Q ss_pred -cccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCch----HHhcCCCCccccCCCCCChhHH
Q 000711 510 -DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 584 (1338)
Q Consensus 510 -~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~g~~LSgGqk 584 (1338)
..++.++|+||++.++..|++||+.++...........++++.++++.+++.+ ..++. ...||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LSgG~~ 160 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSP--------ALSLSGGQQ 160 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCC--------hhhCCHHHH
Confidence 23467999999999888999999987532110000111245677888888843 23332 368999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhH-hhcceEEEccC
Q 000711 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 649 (1338)
Q Consensus 585 QRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~-~~~d~i~~l~~ 649 (1338)
||++|||||+.+|+++||||||++||+.+...+++.+++ .++|+|++||+++.+ ..||++++|++
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~ 228 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLM 228 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999998865 378999999999987 56999999986
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=351.53 Aligned_cols=189 Identities=21% Similarity=0.321 Sum_probs=149.8
Q ss_pred CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCC---CccEEEeCCCC-cc--ccccEEEEecCCC-CCCCCHH
Q 000711 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL---VSGHIAKPGVG-SD--LNKEIFYVPQRPY-TAVGTLR 530 (1338)
Q Consensus 458 ~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~---~~G~i~~~~~~-~~--~~~~i~~v~Q~~~-l~~~tl~ 530 (1338)
..+++|++.-++||+.+.+.||.|||||||+++|+|-.+- ..|+|..||.+ ++ -++.++|++|... ++..|||
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 4799999999999999999999999999999999998763 35799999987 11 1567999999775 5567999
Q ss_pred HHhcCCCCCCcc---cCCCCHHH-----HHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 000711 531 DQLIYPLTSDQE---VEPLTHGG-----MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAIL 602 (1338)
Q Consensus 531 eni~~~~~~~~~---~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~illL 602 (1338)
|-+.|....... .++.++.+ .+.+++..||++-.+.+..++ -....|||||.||++|-+++.+|+++++
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd---~~RGvSGGerKRvsi~E~~v~~~~~~~~ 284 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGND---MVRGVSGGERKRVSIGEMLVGPASILFW 284 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceeccc---ccccccCcccceeeeeeeeecCcceeee
Confidence 999875432111 11233333 236788899988766653221 2356999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChh--hHhhcceEEEccC
Q 000711 603 DECTSAVTTDMEERFCAKVRA----MGTSCITISHRPA--LVAFHDVVLSLDG 649 (1338)
Q Consensus 603 DEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~--~~~~~d~i~~l~~ 649 (1338)
||+|.|||..+.-++.+.+++ .+.|.++.-|+++ .....|.|++|.+
T Consensus 285 De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e 337 (1391)
T KOG0065|consen 285 DEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSE 337 (1391)
T ss_pred ecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeec
Confidence 999999999999999988875 3788888888764 5667899999986
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=323.97 Aligned_cols=202 Identities=25% Similarity=0.339 Sum_probs=159.7
Q ss_pred EEeeeEEeCCCc-cccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEEEE
Q 000711 1101 SFSKLDIITPSQ-KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYV 1177 (1338)
Q Consensus 1101 ~f~nV~f~yp~~-~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~~V 1177 (1338)
+++||++.|++. +++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.++... ...+.+++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 468999998652 5799999999999999999999999999999999999999999999999988654 2234579999
Q ss_pred cCCC--CCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCC
Q 000711 1178 PQRP--YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 1255 (1338)
Q Consensus 1178 pQdP--~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~ 1255 (1338)
||+| .++..|+++|+.++... .+.. ....+..+.++++.+++....++. ...
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~----------~~~~------~~~~~~~~~~~l~~~~l~~~~~~~----------~~~ 134 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLEN----------LGLP------EEEIEERVEEALELVGLEGLRDRS----------PFT 134 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHH----------cCCC------HHHHHHHHHHHHHHcCcHhhhcCC----------ccc
Confidence 9998 46788999999653110 0000 000122345566666664433322 357
Q ss_pred CChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCCCcc-cccceEEEecCC
Q 000711 1256 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALIP-FHSLELRLIDGE 1328 (1338)
Q Consensus 1256 LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~~i~-~~d~~l~l~~g~ 1328 (1338)
||||||||++||||++++|++|||||||++||+++.+.+.+.+++ .++|+|+|+|+++.+. ++|+++.|.+|+
T Consensus 135 LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 135 LSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999999999888776543 3899999999998664 599999997663
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=324.65 Aligned_cols=202 Identities=25% Similarity=0.295 Sum_probs=160.9
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc-----CCcccE
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSGCGI 1174 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~-----~lr~~i 1174 (1338)
|+++||++.|++.+++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.++.... ..++++
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 81 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQI 81 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhhe
Confidence 789999999965567999999999999999999999999999999999999999999999999887642 135679
Q ss_pred EEEcCCCCCC-CCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCccc
Q 000711 1175 FYVPQRPYTC-LGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 1253 (1338)
Q Consensus 1175 ~~VpQdP~LF-~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g 1253 (1338)
+|+||+|.+| ..|+++|+.++... .+.. ....++.+.++++.+++.....+. .
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~----------~~~~------~~~~~~~~~~~l~~~~l~~~~~~~----------~ 135 (222)
T PRK10908 82 GMIFQDHHLLMDRTVYDNVAIPLII----------AGAS------GDDIRRRVSAALDKVGLLDKAKNF----------P 135 (222)
T ss_pred EEEecCccccccccHHHHHHhHHHh----------cCCC------HHHHHHHHHHHHHHcCChhhhhCC----------c
Confidence 9999999874 67999999764210 0000 000112344556666664433222 2
Q ss_pred CCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCCCc-ccccceEEEecC
Q 000711 1254 DILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLELRLIDG 1327 (1338)
Q Consensus 1254 ~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~~i-~~~d~~l~l~~g 1327 (1338)
..||||||||++||||++++|++|||||||++||.++.+.+.+.+++ .+.|+|+|+|+++.+ .++|+++.|.+|
T Consensus 136 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 213 (222)
T PRK10908 136 IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDG 213 (222)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999998887766543 479999999999866 468999999665
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=316.19 Aligned_cols=188 Identities=28% Similarity=0.419 Sum_probs=163.0
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC-----ccccccEEEEe
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP 519 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~-----~~~~~~i~~v~ 519 (1338)
++++||++.|+ ++++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ...+++++|+|
T Consensus 1 l~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (201)
T cd03231 1 LEADELTCERD-GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLG 79 (201)
T ss_pred CEEEEEEEEeC-CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEec
Confidence 46899999985 4679999999999999999999999999999999999999999999999865 12456799999
Q ss_pred cCCCCC-CCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCC
Q 000711 520 QRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1338)
Q Consensus 520 Q~~~l~-~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ 598 (1338)
|++.++ ..|++||+.+.... ..++++.++++.+++.++.++.+ .+||||||||++||||++++|+
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~laral~~~p~ 145 (201)
T cd03231 80 HAPGIKTTLSVLENLRFWHAD------HSDEQVEEALARVGLNGFEDRPV--------AQLSAGQQRRVALARLLLSGRP 145 (201)
T ss_pred cccccCCCcCHHHHHHhhccc------ccHHHHHHHHHHcCChhhhcCch--------hhCCHHHHHHHHHHHHHhcCCC
Confidence 999775 57999999875321 24567889999999987766654 6899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChh-hHhhcceEEEc
Q 000711 599 FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPA-LVAFHDVVLSL 647 (1338)
Q Consensus 599 illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~-~~~~~d~i~~l 647 (1338)
++||||||++||+.+.+.+.+.+++ .|+|+|++||+.. ....+++++++
T Consensus 146 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 146 LWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 9999999999999999999998864 3899999999765 55678888876
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=331.32 Aligned_cols=199 Identities=20% Similarity=0.210 Sum_probs=166.4
Q ss_pred CCcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCC-----CccEEEeCCCCc-------
Q 000711 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS------- 509 (1338)
Q Consensus 442 ~~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~-----~~G~i~~~~~~~------- 509 (1338)
.+.|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 17 ~~~l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~ 95 (267)
T PRK14235 17 EIKMRARDVSVFYG-EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDV 95 (267)
T ss_pred CceEEEEeEEEEEC-CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccch
Confidence 45799999999996 46899999999999999999999999999999999999975 899999998541
Q ss_pred -cccccEEEEecCCCCCCCCHHHHhcCCCCCCcc--cCCCCHHHHHHHHHHcCCchH----HhcCCCCccccCCCCCChh
Q 000711 510 -DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE--VEPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLG 582 (1338)
Q Consensus 510 -~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~----~~~~~~~~~~~~g~~LSgG 582 (1338)
.+++.++|+||+|.++..|+.||+.++...... ......+++.++++.+++.+. .++. ..+||||
T Consensus 96 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LSgG 167 (267)
T PRK14235 96 VELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEP--------GTGLSGG 167 (267)
T ss_pred HHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCC--------cccCCHH
Confidence 235679999999998888999999875321110 011123457788999998653 2232 3689999
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhH-hhcceEEEccC
Q 000711 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 649 (1338)
Q Consensus 583 qkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~-~~~d~i~~l~~ 649 (1338)
||||++|||||+.+|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+ ..+|++++|++
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~ 237 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHL 237 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEEC
Confidence 99999999999999999999999999999999999998865 368999999999988 57899999986
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=328.80 Aligned_cols=207 Identities=25% Similarity=0.352 Sum_probs=170.2
Q ss_pred eEEeeeEEeCCC--ccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc--CCcccEE
Q 000711 1100 ISFSKLDIITPS--QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIF 1175 (1338)
Q Consensus 1100 I~f~nV~f~yp~--~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~--~lr~~i~ 1175 (1338)
|+++|+++.|++ ..++|+|+||+|++||.++|+|+||||||||+++|.|+++|.+|+|.++|.++.... ..+.+++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 578999999975 357999999999999999999999999999999999999999999999999886542 2245799
Q ss_pred EEcCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCc-ccC
Q 000711 1176 YVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLN-WED 1254 (1338)
Q Consensus 1176 ~VpQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~-~g~ 1254 (1338)
|+||+|.+|+.|++||+.++.... ....+.+.++..++..+++..|.|+++..+ ...
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 138 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDA----------------------TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGS 138 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCC----------------------CHHHHHHHHHHcChHHHHHhhccccceeeccCCc
Confidence 999999999999999997643210 011122233444455555566667776653 457
Q ss_pred CCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1255 ILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1255 ~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
+||||||||++||||++++|+++||||||++||+.+.+.+.+.+++ .|+|+|+++|+++.+.++|+++.|.+|.
T Consensus 139 ~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~ 214 (238)
T cd03249 139 QLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQ 214 (238)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCE
Confidence 8999999999999999999999999999999999999988877643 5899999999999888999999997764
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=326.26 Aligned_cols=194 Identities=25% Similarity=0.351 Sum_probs=161.9
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc-------cccccEEE
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------DLNKEIFY 517 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~-------~~~~~i~~ 517 (1338)
|+++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYYG-QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred CEEEeEEEEeC-CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 46899999996 46899999999999999999999999999999999999999999999998541 12457999
Q ss_pred EecCCCCCCC-CHHHHhcCCCCCCcccCCCCHHHHHHHHHHcC-CchHHhcCCCCccccCCCCCChhHHHHHHHHHHHcc
Q 000711 518 VPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVD-LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1338)
Q Consensus 518 v~Q~~~l~~~-tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~ 595 (1338)
+||++.++.. |++||+.++..... ....+...++++.++ +.+..++.+ .+||||||||++||||+++
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~l~~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALP---RRSRKIPDEIYELFPVLKEMLGRRG--------GDLSGGQQQQLAIARALVT 148 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcC---cchHHHHHHHHHHHHhHHHHhhCCh--------hhCCHHHHHHHHHHHHHhc
Confidence 9999988875 99999987532211 011233466677665 455555543 6899999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHh-hcceEEEccCC
Q 000711 596 KPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 596 ~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
+|++++|||||++||+.+.+.+.+.+.+ .++|+|++||+++.+. .+|++++++++
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g 208 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERG 208 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999988764 3789999999999887 69999999863
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=306.59 Aligned_cols=208 Identities=20% Similarity=0.248 Sum_probs=167.9
Q ss_pred CceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc-----CCcc
Q 000711 1098 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSGC 1172 (1338)
Q Consensus 1098 g~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~-----~lr~ 1172 (1338)
-.|++++|++.| +++.||+||||+|++||.++|+|+||||||||++++.|++.|++|+|.++|.||..++ ..|+
T Consensus 7 ~~I~vr~v~~~f-G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 7 PLIEVRGVTKSF-GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred ceEEEeeeeeec-CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 469999999998 5678999999999999999999999999999999999999999999999999998872 3466
Q ss_pred cEEEEcCCCCCCCC-CHHHHhcCCCchHHHHHHHHhhhcCCccccccc-cCchHHHHHHHhhCCchhh-hhhhcccCccc
Q 000711 1173 GIFYVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTT-NILDSYLKTILEGVRLSYL-LEREEVGWDAN 1249 (1338)
Q Consensus 1173 ~i~~VpQdP~LF~G-TIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~-~~~d~~i~~~l~~~~L~~~-i~~~~~Gldt~ 1249 (1338)
+++++.|.--||+. |++||+.+|.-.... ++ +..++.+..-|+.|||... .+.
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~~~----------------lp~~~i~~lv~~KL~~VGL~~~~~~~-------- 141 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREHTK----------------LPESLIRELVLMKLELVGLRGAAADL-------- 141 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhhcc----------------CCHHHHHHHHHHHHHhcCCChhhhhh--------
Confidence 89999999999975 999999988532110 00 0012222333566666433 111
Q ss_pred CcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHH----hcCCeEEEeccCCC-CcccccceEEE
Q 000711 1250 LNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAK----DMGITFVTSSQRPA-LIPFHSLELRL 1324 (1338)
Q Consensus 1250 ~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~----~~~~TvI~IAHRl~-~i~~~d~~l~l 1324 (1338)
....||||.+.|.|+||||.-+|+|+++|||||+||+-+-..+.++++ ..|.|+|+|+|.++ +...+|++..|
T Consensus 142 --~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L 219 (263)
T COG1127 142 --YPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVL 219 (263)
T ss_pred --CchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEE
Confidence 245799999999999999999999999999999999998776665543 35999999999995 66778999999
Q ss_pred ecCCCCeE
Q 000711 1325 IDGEGNWE 1332 (1338)
Q Consensus 1325 ~~g~g~~~ 1332 (1338)
.||+=-|+
T Consensus 220 ~~gkv~~~ 227 (263)
T COG1127 220 ADGKVIAE 227 (263)
T ss_pred eCCEEEEe
Confidence 87764443
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=309.12 Aligned_cols=160 Identities=34% Similarity=0.590 Sum_probs=146.3
Q ss_pred EEEEeEEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC------ccccccEEE
Q 000711 445 IEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1338)
Q Consensus 445 i~~~~v~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~ 517 (1338)
++++|+++.|+++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 4689999999753 579999999999999999999999999999999999999999999999864 123567999
Q ss_pred EecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCC
Q 000711 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1338)
Q Consensus 518 v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p 597 (1338)
++|+|.++..|++||+ ||||||||++||||++++|
T Consensus 81 ~~q~~~~~~~tv~~~l---------------------------------------------LS~G~~qrv~la~al~~~p 115 (173)
T cd03246 81 LPQDDELFSGSIAENI---------------------------------------------LSGGQRQRLGLARALYGNP 115 (173)
T ss_pred ECCCCccccCcHHHHC---------------------------------------------cCHHHHHHHHHHHHHhcCC
Confidence 9999998888999887 9999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHhhcceEEEccC
Q 000711 598 KFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDG 649 (1338)
Q Consensus 598 ~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~~~d~i~~l~~ 649 (1338)
+++||||||++||+.+...+.+.+++ .|+|+|++||+++.+..+|++++|++
T Consensus 116 ~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~ 170 (173)
T cd03246 116 RILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLED 170 (173)
T ss_pred CEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 99999999999999999999888754 48899999999999899999999986
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=317.77 Aligned_cols=191 Identities=27% Similarity=0.362 Sum_probs=163.9
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC-----ccccccEEEEe
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP 519 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~-----~~~~~~i~~v~ 519 (1338)
++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...+++++|++
T Consensus 2 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~ 80 (204)
T PRK13538 2 LEARNLACERD-ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLG 80 (204)
T ss_pred eEEEEEEEEEC-CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeC
Confidence 78999999986 4679999999999999999999999999999999999999999999999864 12356799999
Q ss_pred cCCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCC
Q 000711 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1338)
Q Consensus 520 Q~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ 598 (1338)
|++.++. .|++||+.++..... ...++++.++++.+++.++.++.+ ..||||||||++||||++++|+
T Consensus 81 ~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~~qrl~la~al~~~p~ 149 (204)
T PRK13538 81 HQPGIKTELTALENLRFYQRLHG---PGDDEALWEALAQVGLAGFEDVPV--------RQLSAGQQRRVALARLWLTRAP 149 (204)
T ss_pred CccccCcCCcHHHHHHHHHHhcC---ccHHHHHHHHHHHcCCHHHhhCCh--------hhcCHHHHHHHHHHHHHhcCCC
Confidence 9987765 699999987642211 123467888999999988777654 6899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHh-hcceEEEc
Q 000711 599 FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSL 647 (1338)
Q Consensus 599 illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~-~~d~i~~l 647 (1338)
+++|||||++||+.+.+.+++.+++ .+.|+|++||+++.+. +.++++++
T Consensus 150 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 150 LWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 9999999999999999999998764 3889999999999885 45677666
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=329.46 Aligned_cols=198 Identities=22% Similarity=0.320 Sum_probs=166.5
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc------c-ccccEE
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------D-LNKEIF 516 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~-~~~~i~ 516 (1338)
.++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. . .+..++
T Consensus 5 ~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (255)
T PRK11300 5 LLSVSGLMMRFG-GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVV 83 (255)
T ss_pred eEEEeeEEEEEC-CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeE
Confidence 689999999996 46899999999999999999999999999999999999999999999998641 1 134589
Q ss_pred EEecCCCCCCC-CHHHHhcCCCCCC-------c--------ccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCC
Q 000711 517 YVPQRPYTAVG-TLRDQLIYPLTSD-------Q--------EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELS 580 (1338)
Q Consensus 517 ~v~Q~~~l~~~-tl~eni~~~~~~~-------~--------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LS 580 (1338)
|+||+|.++.. |++||+.++.... . .......+++.++++.+++.+..++.+ .+||
T Consensus 84 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS 155 (255)
T PRK11300 84 RTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQA--------GNLA 155 (255)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCCh--------hhCC
Confidence 99999998875 9999999753210 0 000011245677888899987777655 6899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc---c-CCeEEEEecChhhH-hhcceEEEccCC
Q 000711 581 LGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 581 gGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~---~-~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+ . |+|+|++||+++.+ ..||++++++++
T Consensus 156 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 156 YGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQG 230 (255)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999888753 3 89999999999987 469999999863
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=325.75 Aligned_cols=197 Identities=27% Similarity=0.403 Sum_probs=167.3
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc----cccccEEEEec
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----DLNKEIFYVPQ 520 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~----~~~~~i~~v~Q 520 (1338)
++++|+++.|++ +++++|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++|+||
T Consensus 1 i~i~~l~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q 79 (237)
T TIGR00968 1 IEIANISKRFGS-FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQ 79 (237)
T ss_pred CEEEEEEEEECC-eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEec
Confidence 468999999964 6899999999999999999999999999999999999999999999998651 23467999999
Q ss_pred CCCCCCC-CHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCE
Q 000711 521 RPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1338)
Q Consensus 521 ~~~l~~~-tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~i 599 (1338)
+|.++.+ |++||+.+............++++.++++.+++.++.++.+ .+||+|||||++||||++++|++
T Consensus 80 ~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~lS~G~~qrl~laral~~~p~l 151 (237)
T TIGR00968 80 HYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYP--------NQLSGGQRQRVALARALAVEPQV 151 (237)
T ss_pred ChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh--------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 9998875 99999987532111001112356778899999987777755 68999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHc---c-CCeEEEEecChhhH-hhcceEEEccCC
Q 000711 600 AILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 600 llLDEpts~LD~~~~~~i~~~l~~---~-~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
++|||||++||+++++.+.+.+++ . ++|+|++||+++.+ +.+|++++++++
T Consensus 152 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g 207 (237)
T TIGR00968 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNG 207 (237)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECC
Confidence 999999999999999999998864 2 79999999999986 569999999863
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=327.15 Aligned_cols=205 Identities=24% Similarity=0.287 Sum_probs=162.9
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCC-----CCCCceEEcCCCCCcccc----CC
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLW-----PVVSGSLTKPSQHIDEEA----GS 1170 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~-----~~~sG~I~idg~dI~~~~----~l 1170 (1338)
|+++||++.|++ .++|+|+||+|++||+++|+|+||||||||+++|.|++ +|.+|+|.++|.++.... ..
T Consensus 1 i~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 1 IELRDLNVYYGD-KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred CEEEEEEEEcCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 578999999965 47999999999999999999999999999999999999 999999999999886542 23
Q ss_pred cccEEEEcCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC
Q 000711 1171 GCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 1250 (1338)
Q Consensus 1171 r~~i~~VpQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~ 1250 (1338)
+++++||||+|.+|..|++||+.++... .+.. .....+..+.++++.+++.....+.+ +
T Consensus 80 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~----------~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~---~--- 138 (227)
T cd03260 80 RRRVGMVFQKPNPFPGSIYDNVAYGLRL----------HGIK-----LKEELDERVEEALRKAALWDEVKDRL---H--- 138 (227)
T ss_pred HhhEEEEecCchhccccHHHHHHhHHHh----------cCCC-----cHHHHHHHHHHHHHHcCCChHHhccC---C---
Confidence 5579999999999988999999754210 0000 00001234556677777644332210 0
Q ss_pred cccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCc-ccccceEEEecC
Q 000711 1251 NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALI-PFHSLELRLIDG 1327 (1338)
Q Consensus 1251 ~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i-~~~d~~l~l~~g 1327 (1338)
..+||||||||++||||++++|++|||||||++||.++.+.+.+.+++ ..+|+|+|+|+++.+ .++|+++.|.+|
T Consensus 139 --~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G 216 (227)
T cd03260 139 --ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNG 216 (227)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCC
Confidence 357999999999999999999999999999999999999888776643 238999999999864 579999999776
Q ss_pred C
Q 000711 1328 E 1328 (1338)
Q Consensus 1328 ~ 1328 (1338)
+
T Consensus 217 ~ 217 (227)
T cd03260 217 R 217 (227)
T ss_pred E
Confidence 4
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=326.95 Aligned_cols=198 Identities=23% Similarity=0.308 Sum_probs=165.7
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc------c-ccccEE
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------D-LNKEIF 516 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~-~~~~i~ 516 (1338)
.++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. . .++.++
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (241)
T PRK10895 3 TLTAKNLAKAYK-GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred eEEEeCcEEEeC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence 488999999996 46899999999999999999999999999999999999999999999998641 1 246799
Q ss_pred EEecCCCCCC-CCHHHHhcCCCCCCcc-cCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000711 517 YVPQRPYTAV-GTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1338)
Q Consensus 517 ~v~Q~~~l~~-~tl~eni~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1338)
|+||++.++. .|++||+.++...... .....+.++.++++.+++.+..++.+ ..||||||||++||||++
T Consensus 82 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~ 153 (241)
T PRK10895 82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMG--------QSLSGGERRRVEIARALA 153 (241)
T ss_pred EeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcch--------hhCCHHHHHHHHHHHHHh
Confidence 9999998877 5999999875321110 01112345778889899887666544 689999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 595 ~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+ ..+|++++|+++
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G 213 (241)
T PRK10895 154 ANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQG 213 (241)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCC
Confidence 99999999999999999999988877653 589999999999755 679999999763
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=322.13 Aligned_cols=201 Identities=22% Similarity=0.270 Sum_probs=161.6
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc-CCcccEEEEc
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-GSGCGIFYVP 1178 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~-~lr~~i~~Vp 1178 (1338)
|+++||++.|++ .++|+|+||+|++| .+||+||||||||||+++|.|+++|++|+|.++|.++.... ..+.+++|||
T Consensus 1 i~~~~~~~~~~~-~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 78 (211)
T cd03264 1 LQLENLTKRYGK-KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP 78 (211)
T ss_pred CEEEEEEEEECC-EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEec
Confidence 579999999865 47999999999999 99999999999999999999999999999999999886542 2356799999
Q ss_pred CCCCCCCC-CHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCCC
Q 000711 1179 QRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 1257 (1338)
Q Consensus 1179 QdP~LF~G-TIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LS 1257 (1338)
|+|.+|.+ |+++|+.++... .+.. .......+.++++.+++....+. . ...||
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~----------~~~~------~~~~~~~~~~~l~~~~l~~~~~~-------~---~~~LS 132 (211)
T cd03264 79 QEFGVYPNFTVREFLDYIAWL----------KGIP------SKEVKARVDEVLELVNLGDRAKK-------K---IGSLS 132 (211)
T ss_pred CCCcccccCCHHHHHHHHHHH----------hCCC------HHHHHHHHHHHHHHCCCHHHHhC-------c---hhhCC
Confidence 99999986 999999642100 0000 00012234566677777543322 2 24699
Q ss_pred hhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCc-ccccceEEEecCC
Q 000711 1258 LGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALI-PFHSLELRLIDGE 1328 (1338)
Q Consensus 1258 gGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i-~~~d~~l~l~~g~ 1328 (1338)
||||||++||||++++|+++||||||++||.++.+.+.+.+++ .+.|+|+|+|+++.+ +++|+++.+.+|+
T Consensus 133 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~ 206 (211)
T cd03264 133 GGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGK 206 (211)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999988877654 369999999999876 5799999997653
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-35 Score=329.91 Aligned_cols=199 Identities=21% Similarity=0.249 Sum_probs=168.8
Q ss_pred CcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC------ccccccEE
Q 000711 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 516 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~ 516 (1338)
..|+++||++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++
T Consensus 6 ~~l~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (265)
T PRK10253 6 ARLRGEQLTLGYG-KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIG 84 (265)
T ss_pred cEEEEEEEEEEEC-CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheE
Confidence 5799999999997 4679999999999999999999999999999999999999999999999864 12345799
Q ss_pred EEecCCCCCC-CCHHHHhcCCCCCCc----ccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHH
Q 000711 517 YVPQRPYTAV-GTLRDQLIYPLTSDQ----EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1338)
Q Consensus 517 ~v~Q~~~l~~-~tl~eni~~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalAR 591 (1338)
|+||++.++. .|++||+.++..... ......++++.++++.+++.+..++.+ .+||||||||++|||
T Consensus 85 ~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~Gq~qrv~lar 156 (265)
T PRK10253 85 LLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV--------DTLSGGQRQRAWIAM 156 (265)
T ss_pred EeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc--------ccCChHHHHHHHHHH
Confidence 9999998764 699999987531110 001112346788999999988877765 689999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 592 al~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
|++++|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+ ..+|++++|+++
T Consensus 157 al~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G 220 (265)
T PRK10253 157 VLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREG 220 (265)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999988754 388999999999866 579999999863
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=329.37 Aligned_cols=212 Identities=23% Similarity=0.295 Sum_probs=162.0
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc---CCcccEEE
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA---GSGCGIFY 1176 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~---~lr~~i~~ 1176 (1338)
|+++||++.|++ +++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.++.... ..+.+++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 1 LEVRGLTKRFGG-LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred CeeeeeEEEECC-EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 478999999974 56999999999999999999999999999999999999999999999999887652 22456999
Q ss_pred EcCCCCCCCC-CHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCC
Q 000711 1177 VPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 1255 (1338)
Q Consensus 1177 VpQdP~LF~G-TIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~ 1255 (1338)
|||+|.+|.+ |+++|+.++....... ...+. .. ........+.+.++++.+++....++ ....
T Consensus 80 v~q~~~l~~~~tv~~~l~~~~~~~~~~-~~~~~--~~---~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~ 143 (236)
T cd03219 80 TFQIPRLFPELTVLENVMVAAQARTGS-GLLLA--RA---RREEREARERAEELLERVGLADLADR----------PAGE 143 (236)
T ss_pred EecccccccCCCHHHHHHHHHhhcccc-ccccc--cc---cccHHHHHHHHHHHHHHcCccchhhC----------Chhh
Confidence 9999999987 9999997542100000 00000 00 00000012234556666666332211 1357
Q ss_pred CChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCCCc-ccccceEEEecCC
Q 000711 1256 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLELRLIDGE 1328 (1338)
Q Consensus 1256 LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~~i-~~~d~~l~l~~g~ 1328 (1338)
||||||||++||||++++|+++||||||++||.++.+.+.+.+++ .++|+|+|+|+++.+ .++|+++.|.+|+
T Consensus 144 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~ 220 (236)
T cd03219 144 LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGR 220 (236)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 999999999999999999999999999999999999888776643 589999999999866 6799999997654
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=328.05 Aligned_cols=199 Identities=24% Similarity=0.252 Sum_probs=162.3
Q ss_pred ceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEEE
Q 000711 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFY 1176 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~~ 1176 (1338)
.|+++||++.|++ +++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.++|.++... ...+.+++|
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 3 EIEFKEVSYSSFG-KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred eEEEEeEEEEeCC-eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 4899999999964 5799999999999999999999999999999999999999999999999988754 234557999
Q ss_pred EcCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCch-hhhhhhcccCcccCcccCC
Q 000711 1177 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS-YLLEREEVGWDANLNWEDI 1255 (1338)
Q Consensus 1177 VpQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~-~~i~~~~~Gldt~~~~g~~ 1255 (1338)
+||+|.+|+.|+++|+.++..... ..+..+.++++.+++. +...+ ....
T Consensus 82 ~~q~~~~~~~tv~e~l~~~~~~~~--------------------~~~~~~~~~l~~~~l~~~~~~~----------~~~~ 131 (241)
T PRK14250 82 VFQQPHLFEGTVKDNIEYGPMLKG--------------------EKNVDVEYYLSIVGLNKEYATR----------DVKN 131 (241)
T ss_pred EecCchhchhhHHHHHhcchhhcC--------------------cHHHHHHHHHHHcCCCHHHhhC----------Cccc
Confidence 999999999999999975421000 0012344556666663 22211 2357
Q ss_pred CChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCc-ccccceEEEecCC
Q 000711 1256 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDGE 1328 (1338)
Q Consensus 1256 LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i-~~~d~~l~l~~g~ 1328 (1338)
||||||||++||||++++|++|||||||++||.++.+.+.+.+++ .|+|+|+|+|+++.+ .++|+++.|.+|.
T Consensus 132 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~ 209 (241)
T PRK14250 132 LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGI 209 (241)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCE
Confidence 999999999999999999999999999999999999887776543 389999999999865 5799999997654
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=310.56 Aligned_cols=163 Identities=29% Similarity=0.438 Sum_probs=148.6
Q ss_pred EEEEeEEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC-----ccccccEEEE
Q 000711 445 IEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYV 518 (1338)
Q Consensus 445 i~~~~v~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~-----~~~~~~i~~v 518 (1338)
++++|+++.|++. +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|+
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 4789999998754 479999999999999999999999999999999999999999999999864 1235679999
Q ss_pred ecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCC
Q 000711 519 PQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1338)
Q Consensus 519 ~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ 598 (1338)
||+|++++.|++||+ + ..||||||||++||||++++|+
T Consensus 81 ~q~~~~~~~tv~~~i----------------------------------~--------~~LS~G~~qrv~laral~~~p~ 118 (178)
T cd03247 81 NQRPYLFDTTLRNNL----------------------------------G--------RRFSGGERQRLALARILLQDAP 118 (178)
T ss_pred ccCCeeecccHHHhh----------------------------------c--------ccCCHHHHHHHHHHHHHhcCCC
Confidence 999998888999987 2 5799999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhHhhcceEEEccC
Q 000711 599 FAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 649 (1338)
Q Consensus 599 illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~~~~d~i~~l~~ 649 (1338)
++||||||++||+.+.+.+++.+++ .++|+|++||+++.+..+|++++|++
T Consensus 119 ~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~ 171 (178)
T cd03247 119 IVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLEN 171 (178)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEEC
Confidence 9999999999999999999998865 38899999999999999999999986
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-35 Score=328.46 Aligned_cols=197 Identities=30% Similarity=0.395 Sum_probs=167.1
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc------cccccEEEE
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------DLNKEIFYV 518 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~~~~~i~~v 518 (1338)
++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.++|+
T Consensus 2 l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 2 LRLSRVSWSAG-GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred ceEEeEEEEEC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 68999999986 46899999999999999999999999999999999999999999999998641 234579999
Q ss_pred ecCCCC-CCCCHHHHhcCCCCCC-cc---cCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHH
Q 000711 519 PQRPYT-AVGTLRDQLIYPLTSD-QE---VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1338)
Q Consensus 519 ~Q~~~l-~~~tl~eni~~~~~~~-~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal 593 (1338)
||++.+ +..|++||+.++.... .. .....++++.++++.+++.+..++.+ ..||||||||++||||+
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~la~al 152 (256)
T TIGR03873 81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM--------STLSGGERQRVHVARAL 152 (256)
T ss_pred cccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc--------ccCCHHHHHHHHHHHHH
Confidence 999854 5679999998753211 00 01112346788999999988777755 68999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 594 ~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
+.+|+++||||||++||+.+...+.+.+++ .|.|+|++||+++.+ ..+|++++|+++
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 213 (256)
T TIGR03873 153 AQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGG 213 (256)
T ss_pred hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999888764 388999999999988 579999999863
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=329.63 Aligned_cols=198 Identities=20% Similarity=0.242 Sum_probs=165.1
Q ss_pred CCcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCC-----CCccEEEeCCCCc-------
Q 000711 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS------- 509 (1338)
Q Consensus 442 ~~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~-----~~~G~i~~~~~~~------- 509 (1338)
...++++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 11 ~~~l~i~nl~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 11 NIIISLQNVTISYGT-FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP 89 (269)
T ss_pred CceEEEEeEEEEECC-EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence 457999999999964 679999999999999999999999999999999999987 6899999998541
Q ss_pred -cccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCch----HHhcCCCCccccCCCCCChhHH
Q 000711 510 -DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 584 (1338)
Q Consensus 510 -~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~g~~LSgGqk 584 (1338)
.+++.++|+||++.++..|++||+.++...... ....++++.++++.+++.. ..++. ..+||||||
T Consensus 90 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LS~G~~ 160 (269)
T PRK14259 90 VEVRRRIGMVFQQPNPFPKSIYENIAFGARINGY-TGDMDELVERSLRKAAVWDECKDKLNES--------GYSLSGGQQ 160 (269)
T ss_pred HHHhhceEEEccCCccchhhHHHHHhhhhhhcCC-cHHHHHHHHHHHHHhCCcchhhhhhCCC--------cccCCHHHH
Confidence 234679999999998888999999886432111 1112345677888887743 22322 368999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhH-hhcceEEEccC
Q 000711 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 649 (1338)
Q Consensus 585 QRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~-~~~d~i~~l~~ 649 (1338)
||++|||||+++|+++||||||++||+.+.+.+++.+++ .++|+|++||+++.+ ..||++++|++
T Consensus 161 qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 161 QRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEec
Confidence 999999999999999999999999999999999998865 368999999999876 58999999985
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=323.13 Aligned_cols=198 Identities=25% Similarity=0.374 Sum_probs=164.8
Q ss_pred cEEEEeEEEEcCCC---CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCC---CCccEEEeCCCC---cccccc
Q 000711 444 YIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP---LVSGHIAKPGVG---SDLNKE 514 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~---~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~---~~~G~i~~~~~~---~~~~~~ 514 (1338)
.+.|+||++.||+. +++++|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+ ...++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 36799999999864 689999999999999999999999999999999999999 999999999865 234678
Q ss_pred EEEEecCCCCCCC-CHHHHhcCCCCCC--cc-cCCCCHHHHHH-HHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHH
Q 000711 515 IFYVPQRPYTAVG-TLRDQLIYPLTSD--QE-VEPLTHGGMVE-LLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1338)
Q Consensus 515 i~~v~Q~~~l~~~-tl~eni~~~~~~~--~~-~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlal 589 (1338)
++|+||++.++.+ |++||+.++.... .. ........+.+ .++.+++.+..++.+ ..||||||||++|
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~l 154 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV--------KGISGGERRRVSI 154 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccc--------cCcCHHHHHHHHH
Confidence 9999999988876 9999998743211 00 01111223444 788888877666544 6899999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecCh--hhHhhcceEEEccC
Q 000711 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRP--ALVAFHDVVLSLDG 649 (1338)
Q Consensus 590 ARal~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~--~~~~~~d~i~~l~~ 649 (1338)
|||++++|+++||||||++||+.+...+.+.+++ .++|+|++||++ +....+|++++|++
T Consensus 155 aral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~ 219 (226)
T cd03234 155 AVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS 219 (226)
T ss_pred HHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999988764 478999999997 45678999999986
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-35 Score=315.76 Aligned_cols=188 Identities=23% Similarity=0.322 Sum_probs=162.6
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC-----ccccccEEEEe
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP 519 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~-----~~~~~~i~~v~ 519 (1338)
++++|+++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...+++++|+|
T Consensus 2 l~~~~l~~~~~~-~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~ 80 (200)
T PRK13540 2 LDVIELDFDYHD-QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVG 80 (200)
T ss_pred EEEEEEEEEeCC-eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEec
Confidence 789999999864 679999999999999999999999999999999999999999999999865 12356799999
Q ss_pred cCCCCC-CCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCC
Q 000711 520 QRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1338)
Q Consensus 520 Q~~~l~-~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ 598 (1338)
|++.++ ..|++||+.++.... ..+.++.++++.+++.+..++.+ .+||||||||++||||++++|+
T Consensus 81 q~~~~~~~~tv~~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 81 HRSGINPYLTLRENCLYDIHFS-----PGAVGITELCRLFSLEHLIDYPC--------GLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred cccccCcCCCHHHHHHHHHhcC-----cchHHHHHHHHHcCCchhhhCCh--------hhcCHHHHHHHHHHHHHhcCCC
Confidence 999885 579999998763211 12346788999999887666543 5799999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHhhcceEEE
Q 000711 599 FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLS 646 (1338)
Q Consensus 599 illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~~~d~i~~ 646 (1338)
++||||||++||+.+.+.+.+.+++ .|.|+|++||+.+.+..+|.-++
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 9999999999999999999998874 48999999999999988887553
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=320.94 Aligned_cols=203 Identities=22% Similarity=0.255 Sum_probs=161.8
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcc--c--cCCcccEE
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDE--E--AGSGCGIF 1175 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~--~--~~lr~~i~ 1175 (1338)
|+++||++.|++ .++|+|+||+|+|||++||+||||||||||+++|.|+++|++|+|.++|.++.. . ...+++++
T Consensus 1 l~~~~l~~~~~~-~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 1 IEIKNLHKSFGD-FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred CEEEEEEEEECC-eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence 578999999975 579999999999999999999999999999999999999999999999998843 1 22355799
Q ss_pred EEcCCCCCCC-CCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccC
Q 000711 1176 YVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWED 1254 (1338)
Q Consensus 1176 ~VpQdP~LF~-GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~ 1254 (1338)
||||+|.+|. .|++||+.++..... +. ..+..+..+.++++.+++....++. ..
T Consensus 80 ~~~q~~~~~~~~t~~e~l~~~~~~~~---------~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~ 134 (213)
T cd03262 80 MVFQQFNLFPHLTVLENITLAPIKVK---------GM------SKAEAEERALELLEKVGLADKADAY----------PA 134 (213)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhc---------CC------CHHHHHHHHHHHHHHcCCHhHhhhC----------cc
Confidence 9999999986 699999975421000 00 0000122345566666664433332 24
Q ss_pred CCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCCCc-ccccceEEEecCC
Q 000711 1255 ILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLELRLIDGE 1328 (1338)
Q Consensus 1255 ~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~~i-~~~d~~l~l~~g~ 1328 (1338)
+||||||||++||||++++|++|||||||++||+++.+.+.+.+++ .++|+|+++|+++.+ +++|++++|.+|+
T Consensus 135 ~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~ 212 (213)
T cd03262 135 QLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGR 212 (213)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 6999999999999999999999999999999999999888776643 489999999999876 6799999997653
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=324.76 Aligned_cols=197 Identities=23% Similarity=0.350 Sum_probs=167.7
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc----cccccEEEEec
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----DLNKEIFYVPQ 520 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~----~~~~~i~~v~Q 520 (1338)
|+++|+++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++|+||
T Consensus 1 l~~~~l~~~~~~-~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (232)
T cd03300 1 IELENVSKFYGG-FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQ 79 (232)
T ss_pred CEEEeEEEEeCC-eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEec
Confidence 468999999864 6899999999999999999999999999999999999999999999998641 12467999999
Q ss_pred CCCCCCC-CHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCE
Q 000711 521 RPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1338)
Q Consensus 521 ~~~l~~~-tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~i 599 (1338)
++.++.+ |++||+.++...........++++.++++.++++++.++.+ ..||||||||++||||++.+|++
T Consensus 80 ~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~lS~G~~qrl~laral~~~p~l 151 (232)
T cd03300 80 NYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP--------SQLSGGQQQRVAIARALVNEPKV 151 (232)
T ss_pred ccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh--------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 9998865 99999986432110001112456778899999998888776 68999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHh-hcceEEEccCC
Q 000711 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 600 llLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
+||||||++||+.+.+.+++.+++ .|+|+|++||+++.+. .+|++++++++
T Consensus 152 lllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G 207 (232)
T cd03300 152 LLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKG 207 (232)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 999999999999999999988754 3899999999999874 69999999863
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=336.24 Aligned_cols=205 Identities=19% Similarity=0.246 Sum_probs=163.8
Q ss_pred ceEEeeeEEeCCCc----cccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc------c
Q 000711 1099 SISFSKLDIITPSQ----KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE------A 1168 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~----~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~------~ 1168 (1338)
.|+++||++.|++. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... .
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 37899999999742 4799999999999999999999999999999999999999999999999998642 2
Q ss_pred CCcccEEEEcCCC--CCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCch-hhhhhhccc
Q 000711 1169 GSGCGIFYVPQRP--YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS-YLLEREEVG 1245 (1338)
Q Consensus 1169 ~lr~~i~~VpQdP--~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~-~~i~~~~~G 1245 (1338)
..|++|+||||+| .+|..|+++||.++... .+.. .+..++.+.++++.++|. +..++
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~----------~~~~------~~~~~~~~~~~l~~~gL~~~~~~~---- 141 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKN----------FKMN------LDEVKNYAHRLLMDLGFSRDVMSQ---- 141 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHH----------cCCC------HHHHHHHHHHHHHHcCCChhhhhC----
Confidence 3456899999998 68889999999753110 0000 000122345566666663 22211
Q ss_pred CcccCcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCc-ccccc
Q 000711 1246 WDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSL 1320 (1338)
Q Consensus 1246 ldt~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i-~~~d~ 1320 (1338)
...+||||||||++|||||+.+|++|||||||++||+.+...+.+++++ .|+|||+|+|+++.+ +++|+
T Consensus 142 ------~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dr 215 (286)
T PRK13646 142 ------SPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADE 215 (286)
T ss_pred ------CcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCE
Confidence 2467999999999999999999999999999999999999888776643 489999999999865 68999
Q ss_pred eEEEecCCC
Q 000711 1321 ELRLIDGEG 1329 (1338)
Q Consensus 1321 ~l~l~~g~g 1329 (1338)
+++|.+|+-
T Consensus 216 i~~l~~G~i 224 (286)
T PRK13646 216 VIVMKEGSI 224 (286)
T ss_pred EEEEECCEE
Confidence 999987754
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=328.07 Aligned_cols=197 Identities=24% Similarity=0.296 Sum_probs=163.9
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCC-----CccEEEeCCCC------cccc
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG------SDLN 512 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~-----~~G~i~~~~~~------~~~~ 512 (1338)
.++++||++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+ ..++
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 81 (250)
T PRK14247 3 KIEIRDLKVSFGQ-VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELR 81 (250)
T ss_pred eEEEEeeEEEECC-eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHh
Confidence 4899999999864 6799999999999999999999999999999999999974 69999999864 1245
Q ss_pred ccEEEEecCCCC-CCCCHHHHhcCCCCCCcc--cCCCCHHHHHHHHHHcCCchH----HhcCCCCccccCCCCCChhHHH
Q 000711 513 KEIFYVPQRPYT-AVGTLRDQLIYPLTSDQE--VEPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQQ 585 (1338)
Q Consensus 513 ~~i~~v~Q~~~l-~~~tl~eni~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~----~~~~~~~~~~~~g~~LSgGqkQ 585 (1338)
+.++|+||+|.+ +..|++||+.++...... .....++++.++++.+++.+. .++. ..+|||||||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LSgG~~q 153 (250)
T PRK14247 82 RRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAP--------AGKLSGGQQQ 153 (250)
T ss_pred ccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCC--------cccCCHHHHH
Confidence 689999999975 467999999875321110 001123567888999998643 3332 2689999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhH-hhcceEEEccC
Q 000711 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 649 (1338)
Q Consensus 586 RlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~-~~~d~i~~l~~ 649 (1338)
|++|||||+++|++++|||||++||+.+...+.+.+++ .++|+|++||+++.+ ..+|++++|++
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 220 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYK 220 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 99999999999999999999999999999999998875 378999999999987 57999999986
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=319.70 Aligned_cols=200 Identities=21% Similarity=0.235 Sum_probs=161.5
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccccCCcccEEEEcC
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 1179 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~~lr~~i~~VpQ 1179 (1338)
|+++|+++.|++. . .|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++......+++++|+||
T Consensus 1 i~~~~l~~~~~~~-~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 77 (211)
T cd03298 1 VRLDKIRFSYGEQ-P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQ 77 (211)
T ss_pred CEEEeEEEEeCCE-e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEec
Confidence 5789999998653 2 399999999999999999999999999999999999999999999988765434557999999
Q ss_pred CCCCCCC-CHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCCCh
Q 000711 1180 RPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 1258 (1338)
Q Consensus 1180 dP~LF~G-TIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSg 1258 (1338)
+|.+|.+ |++||+.++..... . .....++.+.++++.+++.....+. ...||+
T Consensus 78 ~~~~~~~~tv~enl~~~~~~~~---------~-------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~LS~ 131 (211)
T cd03298 78 ENNLFAHLTVEQNVGLGLSPGL---------K-------LTAEDRQAIEVALARVGLAGLEKRL----------PGELSG 131 (211)
T ss_pred ccccCCCCcHHHHHhccccccc---------C-------ccHHHHHHHHHHHHHcCCHHHHhCC----------cccCCH
Confidence 9999976 99999976432100 0 0000133456677777775443332 246999
Q ss_pred hHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCc-ccccceEEEecCC
Q 000711 1259 GEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDGE 1328 (1338)
Q Consensus 1259 GQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i-~~~d~~l~l~~g~ 1328 (1338)
|||||++||||++++|+++||||||++||.++.+.+.+.+++ .++|+|+|+|+++.+ +++|+++.|.+|+
T Consensus 132 G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~ 206 (211)
T cd03298 132 GERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGR 206 (211)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCE
Confidence 999999999999999999999999999999999888776543 489999999999866 6799999997653
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-35 Score=337.20 Aligned_cols=199 Identities=25% Similarity=0.336 Sum_probs=166.3
Q ss_pred CcEEEEeEEEEcCC---------CCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc----
Q 000711 443 NYIEFSGVKVVTPT---------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---- 509 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~---------~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~---- 509 (1338)
..|+++|+++.|+. ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 36899999998863 24799999999999999999999999999999999999999999999999651
Q ss_pred -----cccccEEEEecCCC--CC-CCCHHHHhcCCCCCC-cccCCCCHHHHHHHHHHcCCc-hHHhcCCCCccccCCCCC
Q 000711 510 -----DLNKEIFYVPQRPY--TA-VGTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDEL 579 (1338)
Q Consensus 510 -----~~~~~i~~v~Q~~~--l~-~~tl~eni~~~~~~~-~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~g~~L 579 (1338)
.++++|+||||+|. +. ..|+.+|+..+.... ........+++.++++.+++. +..++.| .+|
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p--------~~L 155 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYP--------HMF 155 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCC--------ccC
Confidence 23567999999994 43 359999886532111 000112245678999999996 4667766 689
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 580 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 580 SgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
|||||||++|||||+.+|++||+||||++||..+...+++.+++ .|.|+|+|||+++.+. .||+|++|.+
T Consensus 156 SgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~ 230 (327)
T PRK11308 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYL 230 (327)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999988754 3899999999999986 6999999986
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=334.21 Aligned_cols=204 Identities=18% Similarity=0.273 Sum_probs=164.3
Q ss_pred ceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcc--c--cCCcccE
Q 000711 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDE--E--AGSGCGI 1174 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~--~--~~lr~~i 1174 (1338)
-|+++||++.|++.+++|+|+||+|++||.+||+|+||||||||+++|.|+++|.+|+|.++|.++.. . ...+.++
T Consensus 5 ~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~i 84 (283)
T PRK13636 5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESV 84 (283)
T ss_pred eEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhE
Confidence 58999999999756779999999999999999999999999999999999999999999999998842 1 2345679
Q ss_pred EEEcCCC--CCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcc
Q 000711 1175 FYVPQRP--YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNW 1252 (1338)
Q Consensus 1175 ~~VpQdP--~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~ 1252 (1338)
+||||+| .+|+.|+++|+.++... .+. ..+..+..+.++++.++|....++ .
T Consensus 85 g~v~q~~~~~~~~~tv~e~l~~~~~~----------~~~------~~~~~~~~~~~~l~~~gL~~~~~~----------~ 138 (283)
T PRK13636 85 GMVFQDPDNQLFSASVYQDVSFGAVN----------LKL------PEDEVRKRVDNALKRTGIEHLKDK----------P 138 (283)
T ss_pred EEEecCcchhhccccHHHHHHhHHHH----------cCC------CHHHHHHHHHHHHHHCCChhhhhC----------C
Confidence 9999999 67899999999753110 000 000011234556677777543322 2
Q ss_pred cCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCc-ccccceEEEecC
Q 000711 1253 EDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDG 1327 (1338)
Q Consensus 1253 g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i-~~~d~~l~l~~g 1327 (1338)
..+||||||||++|||||+++|++|||||||++||+++.+.+.+++++ .|+|||+|+|+++.+ +++|+++.|.+|
T Consensus 139 ~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G 218 (283)
T PRK13636 139 THCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEG 218 (283)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 457999999999999999999999999999999999999877665532 389999999999876 489999999776
Q ss_pred C
Q 000711 1328 E 1328 (1338)
Q Consensus 1328 ~ 1328 (1338)
+
T Consensus 219 ~ 219 (283)
T PRK13636 219 R 219 (283)
T ss_pred E
Confidence 5
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=320.93 Aligned_cols=192 Identities=28% Similarity=0.298 Sum_probs=166.1
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc--cccccEEEEecCC
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--DLNKEIFYVPQRP 522 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~--~~~~~i~~v~Q~~ 522 (1338)
++++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .-.+.++|+||++
T Consensus 1 l~l~~v~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~ 79 (223)
T TIGR03740 1 LETKNLSKRFG-KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESP 79 (223)
T ss_pred CEEEeEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCC
Confidence 46899999986 46899999999999999999999999999999999999999999999998641 1124799999999
Q ss_pred CCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000711 523 YTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601 (1338)
Q Consensus 523 ~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ill 601 (1338)
.++. .|++||+.++.... ...+.++.++++.+++++..++.+ .+||||||||++||||++.+|++++
T Consensus 80 ~~~~~~t~~~~~~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~~rv~laral~~~p~lll 147 (223)
T TIGR03740 80 PLYENLTARENLKVHTTLL----GLPDSRIDEVLNIVDLTNTGKKKA--------KQFSLGMKQRLGIAIALLNHPKLLI 147 (223)
T ss_pred CccccCCHHHHHHHHHHHc----CCCHHHHHHHHHHcCCcHHHhhhH--------hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8765 69999997643211 123567888999999998877755 6899999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhH-hhcceEEEccC
Q 000711 602 LDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDG 649 (1338)
Q Consensus 602 LDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~-~~~d~i~~l~~ 649 (1338)
|||||++||+.+.+.+.+.+++ .|+|+|++||+++.+ ..+|++++|++
T Consensus 148 lDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 199 (223)
T TIGR03740 148 LDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISE 199 (223)
T ss_pred ECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeC
Confidence 9999999999999999998764 478999999999987 57999999976
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=342.18 Aligned_cols=203 Identities=21% Similarity=0.260 Sum_probs=168.2
Q ss_pred ceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccccCCcccEEEEc
Q 000711 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 1178 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~~lr~~i~~Vp 1178 (1338)
.|+++||++.|++ ..+|+|+||+|++||.++|+||||||||||+++|.|+.+|++|+|.+||.++......+++++|||
T Consensus 4 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~ 82 (353)
T TIGR03265 4 YLSIDNIRKRFGA-FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVF 82 (353)
T ss_pred EEEEEEEEEEeCC-eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 5899999999975 569999999999999999999999999999999999999999999999999977643455799999
Q ss_pred CCCCCCC-CCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCCC
Q 000711 1179 QRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 1257 (1338)
Q Consensus 1179 QdP~LF~-GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LS 1257 (1338)
|++.||+ .|++|||.|+.... +. .....+..+.++++.++|..+.++. ..+||
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~----------~~------~~~~~~~~~~~~l~~l~L~~~~~~~----------~~~LS 136 (353)
T TIGR03265 83 QSYALFPNLTVADNIAYGLKNR----------GM------GRAEVAERVAELLDLVGLPGSERKY----------PGQLS 136 (353)
T ss_pred CCcccCCCCcHHHHHHHHHHhc----------CC------CHHHHHHHHHHHHHHcCCCchhhCC----------hhhCC
Confidence 9999996 69999998763210 00 0000133456677888876655443 35699
Q ss_pred hhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHH----hcCCeEEEeccCCC-CcccccceEEEecCC
Q 000711 1258 LGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAK----DMGITFVTSSQRPA-LIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1258 gGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~----~~~~TvI~IAHRl~-~i~~~d~~l~l~~g~ 1328 (1338)
||||||+||||||+++|++|+||||||+||..+.+.+.+.++ +.++|+|.|+|+.+ ....+|++++|.+|+
T Consensus 137 gGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~ 212 (353)
T TIGR03265 137 GGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGV 212 (353)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999887766553 34899999999997 468899999998764
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=326.91 Aligned_cols=194 Identities=21% Similarity=0.248 Sum_probs=160.8
Q ss_pred ceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccccCCcccEEEEc
Q 000711 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 1178 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~~lr~~i~~Vp 1178 (1338)
.|+++||++.|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.. .+.+++|+|
T Consensus 12 ~l~i~~l~~~~~~-~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~---~~~~i~~v~ 87 (257)
T PRK11247 12 PLLLNAVSKRYGE-RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAE---AREDTRLMF 87 (257)
T ss_pred cEEEEEEEEEECC-cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHH---hhCceEEEe
Confidence 5999999999964 579999999999999999999999999999999999999999999999977643 345799999
Q ss_pred CCCCCCC-CCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCCC
Q 000711 1179 QRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 1257 (1338)
Q Consensus 1179 QdP~LF~-GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LS 1257 (1338)
|+|.+|+ .|++||+.++.... .+..+.++++.+++.+..++. ..+||
T Consensus 88 q~~~l~~~~tv~enl~~~~~~~----------------------~~~~~~~~l~~~gl~~~~~~~----------~~~LS 135 (257)
T PRK11247 88 QDARLLPWKKVIDNVGLGLKGQ----------------------WRDAALQALAAVGLADRANEW----------PAALS 135 (257)
T ss_pred cCccCCCCCcHHHHHHhcccch----------------------HHHHHHHHHHHcCChhHhcCC----------hhhCC
Confidence 9999987 69999997643110 122344566666664433221 35799
Q ss_pred hhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCc-ccccceEEEecCC
Q 000711 1258 LGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDGE 1328 (1338)
Q Consensus 1258 gGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i-~~~d~~l~l~~g~ 1328 (1338)
||||||++||||++++|++|||||||++||.++...+.+.+++ .++|+|+|+|+++.+ +++|+++.|.+|+
T Consensus 136 gGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~ 211 (257)
T PRK11247 136 GGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGK 211 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999887766532 489999999999864 6799999997654
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=338.87 Aligned_cols=185 Identities=25% Similarity=0.277 Sum_probs=157.8
Q ss_pred CCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc-----cccccEEEEecCCCCCCC-CHH
Q 000711 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-----DLNKEIFYVPQRPYTAVG-TLR 530 (1338)
Q Consensus 457 ~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~-----~~~~~i~~v~Q~~~l~~~-tl~ 530 (1338)
++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. .++++++|+||++.++.. |++
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHH
Confidence 46799999999999999999999999999999999999999999999998641 235679999999988765 999
Q ss_pred HHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCC
Q 000711 531 DQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 610 (1338)
Q Consensus 531 eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD 610 (1338)
||+.+............++++.++++.+++.+..++.+ .+||||||||++|||||+++|+++||||||++||
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD 156 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPV--------GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLD 156 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCch--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 99987422111001112346788999999988777755 6899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHc---cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 611 TDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 611 ~~~~~~i~~~l~~---~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
+.+.+.+++.+++ .|+|+|++||+++.+. .||++++|++
T Consensus 157 ~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~ 199 (302)
T TIGR01188 157 PRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDH 199 (302)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEEC
Confidence 9999999988764 4899999999999875 7999999986
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=324.17 Aligned_cols=196 Identities=18% Similarity=0.225 Sum_probs=163.2
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc-------cccccEE
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------DLNKEIF 516 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~-------~~~~~i~ 516 (1338)
.++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++
T Consensus 5 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (237)
T PRK11614 5 MLSFDKVSAHYG-KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA 83 (237)
T ss_pred EEEEEeEEEeeC-CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE
Confidence 589999999986 46899999999999999999999999999999999999999999999999641 1345799
Q ss_pred EEecCCCCCCC-CHHHHhcCCCCCCcccCCCCHHHHHHHHHHc-CCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000711 517 YVPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNV-DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1338)
Q Consensus 517 ~v~Q~~~l~~~-tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1338)
|+||++.++.. |++||+.++..... ....++++.++++.+ ++.+..++.+ ..||||||||++||||++
T Consensus 84 ~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~--------~~LS~G~~qrl~la~al~ 153 (237)
T PRK11614 84 IVPEGRRVFSRMTVEENLAMGGFFAE--RDQFQERIKWVYELFPRLHERRIQRA--------GTMSGGEQQMLAIGRALM 153 (237)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccC--hhHHHHHHHHHHHHHHHHHHHHhCch--------hhCCHHHHHHHHHHHHHH
Confidence 99999988874 99999987542110 011233456666666 4655555433 689999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 595 ~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+ +.+|++++|+++
T Consensus 154 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 213 (237)
T PRK11614 154 SQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENG 213 (237)
T ss_pred hCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCC
Confidence 99999999999999999999999888754 489999999999865 689999999863
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=342.12 Aligned_cols=203 Identities=24% Similarity=0.286 Sum_probs=164.0
Q ss_pred eEEeeeEEeCC--C-ccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc-----CCc
Q 000711 1100 ISFSKLDIITP--S-QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSG 1171 (1338)
Q Consensus 1100 I~f~nV~f~yp--~-~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~-----~lr 1171 (1338)
|+++||+++|+ + ..++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.++.... ..|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997 2 467999999999999999999999999999999999999999999999999987652 235
Q ss_pred ccEEEEcCCCCCCC-CCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC
Q 000711 1172 CGIFYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 1250 (1338)
Q Consensus 1172 ~~i~~VpQdP~LF~-GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~ 1250 (1338)
++|+||||+|.+|. .|+++|+.++... .+.. ....++.+.++++.++|.+..++.
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~----------~~~~------~~~~~~~~~~~l~~~gL~~~~~~~-------- 137 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLEL----------AGTP------KAEIKARVTELLELVGLSDKADRY-------- 137 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHH----------cCCC------HHHHHHHHHHHHHHcCCchhhhCC--------
Confidence 67999999999986 6999999764210 0000 000123455667777775433322
Q ss_pred cccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCc-ccccceEEEe
Q 000711 1251 NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLI 1325 (1338)
Q Consensus 1251 ~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i-~~~d~~l~l~ 1325 (1338)
..+||||||||++|||||+++|+|||||||||+||+.+.+.+.+.+++ .|+|+|+|+|+++.+ +++|+++.|.
T Consensus 138 --~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~ 215 (343)
T PRK11153 138 --PAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVID 215 (343)
T ss_pred --hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 346999999999999999999999999999999999999888776643 389999999999865 5799999997
Q ss_pred cCC
Q 000711 1326 DGE 1328 (1338)
Q Consensus 1326 ~g~ 1328 (1338)
+|+
T Consensus 216 ~G~ 218 (343)
T PRK11153 216 AGR 218 (343)
T ss_pred CCE
Confidence 654
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=331.09 Aligned_cols=204 Identities=22% Similarity=0.315 Sum_probs=165.4
Q ss_pred ceEEeeeEEeCCC-ccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEE
Q 000711 1099 SISFSKLDIITPS-QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIF 1175 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~-~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~ 1175 (1338)
.|+++|+++.|++ .+++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.++|.++... ...|.+++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 5899999999974 56899999999999999999999999999999999999999999999999998754 23456799
Q ss_pred EEcCCC--CCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCccc
Q 000711 1176 YVPQRP--YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 1253 (1338)
Q Consensus 1176 ~VpQdP--~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g 1253 (1338)
|+||+| .++..|++|||.++... .+. ..+...+.+.++++.+++....++. .
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~----------~~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~ 140 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLEN----------KKV------PPKKMKDIIDDLAKKVGMEDYLDKE----------P 140 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHH----------cCC------CHHHHHHHHHHHHHHcCCHHHhhCC----------c
Confidence 999999 45678999999753110 000 0000122345566777775444332 2
Q ss_pred CCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---c-CCeEEEeccCCCCcccccceEEEecCC
Q 000711 1254 DILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---M-GITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1254 ~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~-~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
.+||||||||++||||++++|++|||||||++||..+.+.+.+++++ . ++|+|+++|+++.+..+|+++.|.+|.
T Consensus 141 ~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~ 219 (271)
T PRK13632 141 QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGK 219 (271)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCE
Confidence 57999999999999999999999999999999999999888777643 2 589999999998888999999997765
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-35 Score=340.48 Aligned_cols=207 Identities=22% Similarity=0.315 Sum_probs=167.5
Q ss_pred ceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccccCCcccEEEEc
Q 000711 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 1178 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~~lr~~i~~Vp 1178 (1338)
.|+++||++.|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++......+++|+|||
T Consensus 2 ~L~i~~l~~~~~~-~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~ 80 (353)
T PRK10851 2 SIEIANIKKSFGR-TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVF 80 (353)
T ss_pred EEEEEEEEEEeCC-eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEe
Confidence 3789999999975 569999999999999999999999999999999999999999999999999977644455799999
Q ss_pred CCCCCCCC-CHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCCC
Q 000711 1179 QRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 1257 (1338)
Q Consensus 1179 QdP~LF~G-TIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LS 1257 (1338)
|+|.+|+. |++||+.|+..... ..... ..+..++.+.++++.++|..+.++. ...||
T Consensus 81 Q~~~l~p~~tv~eni~~~~~~~~----------~~~~~--~~~~~~~~~~~~l~~~~L~~~~~~~----------~~~LS 138 (353)
T PRK10851 81 QHYALFRHMTVFDNIAFGLTVLP----------RRERP--NAAAIKAKVTQLLEMVQLAHLADRY----------PAQLS 138 (353)
T ss_pred cCcccCCCCcHHHHHHhhhhhcc----------cccCC--CHHHHHHHHHHHHHHcCCchhhhCC----------hhhCC
Confidence 99999974 99999987632100 00000 0001133456677777775544333 35799
Q ss_pred hhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCC-CcccccceEEEecCC
Q 000711 1258 LGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPA-LIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1258 gGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~-~i~~~d~~l~l~~g~ 1328 (1338)
||||||++|||||+++|++|+||||||+||..+.+.+.+.+++ .++|+|+|+|+++ ...++|+++.|.+|+
T Consensus 139 gGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~ 214 (353)
T PRK10851 139 GGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGN 214 (353)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999877665532 4899999999997 577899999997764
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-35 Score=324.63 Aligned_cols=202 Identities=19% Similarity=0.288 Sum_probs=161.2
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc-CCcccEEEEc
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-GSGCGIFYVP 1178 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~-~lr~~i~~Vp 1178 (1338)
|+++|+++.|++ +++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.... ..+++++|+|
T Consensus 2 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~ 80 (236)
T TIGR03864 2 LEVAGLSFAYGA-RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVF 80 (236)
T ss_pred EEEEeeEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeC
Confidence 689999999974 57999999999999999999999999999999999999999999999999886542 2234799999
Q ss_pred CCCCC-CCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCCC
Q 000711 1179 QRPYT-CLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 1257 (1338)
Q Consensus 1179 QdP~L-F~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LS 1257 (1338)
|+|.+ +..|+++|+.++.... +. ......+.+.++++.+++....+. ....||
T Consensus 81 q~~~~~~~~t~~~~l~~~~~~~----------~~------~~~~~~~~~~~~l~~~gl~~~~~~----------~~~~LS 134 (236)
T TIGR03864 81 QQPTLDLDLSVRQNLRYHAALH----------GL------SRAEARERIAALLARLGLAERADD----------KVRELN 134 (236)
T ss_pred CCCCCcccCcHHHHHHHHHHhc----------CC------CHHHHHHHHHHHHHHcCChhhhcC----------ChhhCC
Confidence 99988 5689999996531100 00 000012234556666666432221 234799
Q ss_pred hhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1258 LGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1258 gGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
||||||++||||++++|+++||||||++||.++.+.+.+.+++ .|+|+|+|+|+++.+..+|+++.|.+|+
T Consensus 135 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~ 209 (236)
T TIGR03864 135 GGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGR 209 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCe
Confidence 9999999999999999999999999999999999888776542 4899999999999888899999997664
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-35 Score=295.56 Aligned_cols=197 Identities=26% Similarity=0.358 Sum_probs=167.3
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC------ccccccEEE
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~ 517 (1338)
+|+.+|+++.- .++.+++++||++++||.++|+||||+|||||+|+|+|+..|++|++.++|.+ .++.++-++
T Consensus 1 mi~a~nls~~~-~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 1 MIRAENLSYSL-AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred CeeeeeeEEEe-ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 37889999876 46889999999999999999999999999999999999999999999999986 234567899
Q ss_pred EecCCCC-CCCCHHHHhcCCCCCCcccCCCCHHH--HHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000711 518 VPQRPYT-AVGTLRDQLIYPLTSDQEVEPLTHGG--MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1338)
Q Consensus 518 v~Q~~~l-~~~tl~eni~~~~~~~~~~~~~~~~~--~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1338)
+||+..+ |+.|++|-+.+|...........+++ ..+++..+++..+..+.- ..||||||||+.|||+|.
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y--------~~LSGGEqQRVqlARvLa 151 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDY--------RTLSGGEQQRVQLARVLA 151 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccch--------hhcCchHHHHHHHHHHHH
Confidence 9999865 88899999999865432211212223 678899999999988854 589999999999999997
Q ss_pred c------CCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhH-hhcceEEEccC
Q 000711 595 H------KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDG 649 (1338)
Q Consensus 595 ~------~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~-~~~d~i~~l~~ 649 (1338)
+ ++++|+||||||+||......+++..++ .|..|+.|-||+++. .+||+|++|.+
T Consensus 152 Ql~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~ 216 (259)
T COG4559 152 QLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQ 216 (259)
T ss_pred HccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeC
Confidence 5 4569999999999999999888887764 588999999999986 59999999986
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=319.44 Aligned_cols=200 Identities=23% Similarity=0.298 Sum_probs=160.5
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccccCCcccEEEEcC
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 1179 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~~lr~~i~~VpQ 1179 (1338)
|+++|+++.|++ +++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.. ..+.+++|+||
T Consensus 1 l~~~~l~~~~~~-~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~~~~i~~~~q 77 (210)
T cd03269 1 LEVENVTKRFGR-VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI--AARNRIGYLPE 77 (210)
T ss_pred CEEEEEEEEECC-EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH--HHHccEEEecc
Confidence 578999998864 579999999999999999999999999999999999999999999999998864 23457999999
Q ss_pred CCCCCCC-CHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCCCh
Q 000711 1180 RPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 1258 (1338)
Q Consensus 1180 dP~LF~G-TIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSg 1258 (1338)
+|.+|.+ |++||+.++.. ..+.. ....++.+.++++.+++...... ...+|||
T Consensus 78 ~~~~~~~~tv~e~l~~~~~----------~~~~~------~~~~~~~~~~~l~~~~l~~~~~~----------~~~~LS~ 131 (210)
T cd03269 78 ERGLYPKMKVIDQLVYLAQ----------LKGLK------KEEARRRIDEWLERLELSEYANK----------RVEELSK 131 (210)
T ss_pred CCcCCcCCcHHHHHHHHHH----------HcCCC------hHHHHHHHHHHHHHcCChHHHhC----------cHhhCCH
Confidence 9999975 99999864210 00000 00012345566666666433322 1346999
Q ss_pred hHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCCCc-ccccceEEEecCC
Q 000711 1259 GEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLELRLIDGE 1328 (1338)
Q Consensus 1259 GQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~~i-~~~d~~l~l~~g~ 1328 (1338)
|||||++||||++++|+++||||||++||.++.+.+.+.+++ .++|+|+|+|+++.+ +++|+++.|.+|+
T Consensus 132 G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~ 205 (210)
T cd03269 132 GNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGR 205 (210)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCE
Confidence 999999999999999999999999999999999888776643 489999999999865 6799999997654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=328.34 Aligned_cols=204 Identities=21% Similarity=0.214 Sum_probs=166.7
Q ss_pred CCcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCC-----CCccEEEeCCCCc-------
Q 000711 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS------- 509 (1338)
Q Consensus 442 ~~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~-----~~~G~i~~~~~~~------- 509 (1338)
...++++||++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 18 ~~~l~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 18 EIALSTKDLHVYYG-KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred CeEEEEeeEEEEEC-CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 45799999999995 4789999999999999999999999999999999999996 5899999998641
Q ss_pred -cccccEEEEecCCCCCCCCHHHHhcCCCCCCcc-cCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHH
Q 000711 510 -DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRL 587 (1338)
Q Consensus 510 -~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRl 587 (1338)
..++.++|+||++.++..|++||+.++...... .....++++.++++.+++.+.++... .....+||||||||+
T Consensus 97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~----~~~~~~LS~G~~qrl 172 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDL----HKSALTLSGGQQQRL 172 (267)
T ss_pred HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhh----cCCcccCCHHHHHHH
Confidence 135679999999998889999999876321110 01112355778889998864322110 011368999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 588 alARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
+||||++++|+++||||||++||+.+...+.+.+++ .+.|+|++||+++.+ ..||++++|+++
T Consensus 173 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G 238 (267)
T PRK14237 173 CIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLG 238 (267)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECC
Confidence 999999999999999999999999999999988765 378999999999887 579999999863
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=321.45 Aligned_cols=185 Identities=31% Similarity=0.422 Sum_probs=162.8
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCccccccEEEEecCCC
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q~~~ 523 (1338)
.++++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ +..++|+||++.
T Consensus 4 ~l~~~~l~~~~~-~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----~~~i~~v~q~~~ 77 (251)
T PRK09544 4 LVSLENVSVSFG-QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----KLRIGYVPQKLY 77 (251)
T ss_pred EEEEeceEEEEC-CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----ccCEEEeccccc
Confidence 589999999996 46799999999999999999999999999999999999999999999987 346999999987
Q ss_pred CCC---CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEE
Q 000711 524 TAV---GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 600 (1338)
Q Consensus 524 l~~---~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~il 600 (1338)
++. .|+++|+.+.. ...++++.++++.+++.+..++.+ ..||||||||++||||++++|+++
T Consensus 78 ~~~~l~~~~~~~~~~~~-------~~~~~~~~~~l~~~gl~~~~~~~~--------~~LSgGq~qrv~laral~~~p~ll 142 (251)
T PRK09544 78 LDTTLPLTVNRFLRLRP-------GTKKEDILPALKRVQAGHLIDAPM--------QKLSGGETQRVLLARALLNRPQLL 142 (251)
T ss_pred cccccChhHHHHHhccc-------cccHHHHHHHHHHcCChHHHhCCh--------hhCCHHHHHHHHHHHHHhcCCCEE
Confidence 654 38888876421 123567888999999998887755 689999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHc---c-CCeEEEEecChhhH-hhcceEEEccC
Q 000711 601 ILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALV-AFHDVVLSLDG 649 (1338)
Q Consensus 601 lLDEpts~LD~~~~~~i~~~l~~---~-~~t~i~itH~~~~~-~~~d~i~~l~~ 649 (1338)
||||||++||+.+...+++.+++ . |+|+|++||+++.+ ..+|++++|++
T Consensus 143 lLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~ 196 (251)
T PRK09544 143 VLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH 196 (251)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC
Confidence 99999999999999999888753 2 89999999999987 57999999964
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=329.21 Aligned_cols=198 Identities=25% Similarity=0.353 Sum_probs=163.4
Q ss_pred cEEEEeEEEEcCC--------CCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc------
Q 000711 444 YIEFSGVKVVTPT--------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------ 509 (1338)
Q Consensus 444 ~i~~~~v~~~~~~--------~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~------ 509 (1338)
.|+++||++.|+. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 6899999998852 24799999999999999999999999999999999999999999999998641
Q ss_pred cccccEEEEecCCC--CC-CCCHHHHhcCCCCCCc-ccCCCCHHHHHHHHHHcCCc-hHHhcCCCCccccCCCCCChhHH
Q 000711 510 DLNKEIFYVPQRPY--TA-VGTLRDQLIYPLTSDQ-EVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQ 584 (1338)
Q Consensus 510 ~~~~~i~~v~Q~~~--l~-~~tl~eni~~~~~~~~-~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~g~~LSgGqk 584 (1338)
..++.++|+||+|. ++ ..|+.+|+.++..... ......++++.++++.+++. +..++.+ .+||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LS~G~~ 155 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYP--------HMLAPGQK 155 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCc--------hhcCHHHH
Confidence 12357999999984 33 3489999876422110 00111235678899999994 5555544 68999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 585 QRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
||++||||++++|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+. .||++++|++
T Consensus 156 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~ 225 (267)
T PRK15112 156 QRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQ 225 (267)
T ss_pred HHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 999999999999999999999999999999999988764 3889999999999886 5999999986
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=326.22 Aligned_cols=198 Identities=25% Similarity=0.289 Sum_probs=164.4
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCC-----CCccEEEeCCCCc--------c
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS--------D 510 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~-----~~~G~i~~~~~~~--------~ 510 (1338)
.++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~ 82 (251)
T PRK14251 4 IISAKDVHLSYG-NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE 82 (251)
T ss_pred eEEEEeeEEEEC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence 589999999996 4689999999999999999999999999999999999997 4899999998641 2
Q ss_pred ccccEEEEecCCCCCCCCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCCch----HHhcCCCCccccCCCCCChhHHH
Q 000711 511 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQQ 585 (1338)
Q Consensus 511 ~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~g~~LSgGqkQ 585 (1338)
+++.++|++|++.++..|++||+.++....... ....++++.++++.+++.. ..++. ..+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LS~Gq~q 154 (251)
T PRK14251 83 LRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRN--------AQAFSGGQQQ 154 (251)
T ss_pred hhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccC--------hhhCCHHHHH
Confidence 356799999999998899999998753211100 0112345677888888842 22332 3689999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhHh-hcceEEEccCC
Q 000711 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 586 RlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
|++||||++++|+++||||||++||+.+.+.+.+.+++ .+.|+|+|||+++.+. .+|++++|+++
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G 222 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNG 222 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECC
Confidence 99999999999999999999999999999999998875 3789999999999865 69999999863
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=324.62 Aligned_cols=203 Identities=22% Similarity=0.289 Sum_probs=163.5
Q ss_pred eEEeeeEEeCCCc---cccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc-----CCc
Q 000711 1100 ISFSKLDIITPSQ---KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSG 1171 (1338)
Q Consensus 1100 I~f~nV~f~yp~~---~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~-----~lr 1171 (1338)
|+++|+++.|++. .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.... ..+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 6899999999754 27999999999999999999999999999999999999999999999999887542 124
Q ss_pred ccEEEEcCCCCCCC-CCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC
Q 000711 1172 CGIFYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 1250 (1338)
Q Consensus 1172 ~~i~~VpQdP~LF~-GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~ 1250 (1338)
++++|+||+|.+|. .|++||+.++... .+.. ....++.+.++++.+++....++.
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~----------~~~~------~~~~~~~~~~~l~~~~l~~~~~~~-------- 137 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEI----------AGVP------KAEIEERVLELLELVGLEDKADAY-------- 137 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHH----------cCCC------HHHHHHHHHHHHHHCCChhhhhcC--------
Confidence 57999999999997 6999999643110 0000 000123455667777765443322
Q ss_pred cccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCc-ccccceEEEe
Q 000711 1251 NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLI 1325 (1338)
Q Consensus 1251 ~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i-~~~d~~l~l~ 1325 (1338)
...||||||||++||||++++|++|||||||++||.++.+.+.+.+++ .|+|+|+|+|+++.+ +++|+++.|.
T Consensus 138 --~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~ 215 (233)
T cd03258 138 --PAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVME 215 (233)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 346999999999999999999999999999999999999888776543 389999999999875 5799999997
Q ss_pred cCC
Q 000711 1326 DGE 1328 (1338)
Q Consensus 1326 ~g~ 1328 (1338)
+|+
T Consensus 216 ~G~ 218 (233)
T cd03258 216 KGE 218 (233)
T ss_pred CCE
Confidence 664
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=316.60 Aligned_cols=195 Identities=23% Similarity=0.303 Sum_probs=165.8
Q ss_pred CcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc---cccccEEEEe
Q 000711 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---DLNKEIFYVP 519 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~---~~~~~i~~v~ 519 (1338)
..++++|+++.|+ ++++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++|++
T Consensus 10 ~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~ 88 (214)
T PRK13543 10 PLLAAHALAFSRN-EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLG 88 (214)
T ss_pred ceEEEeeEEEecC-CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEee
Confidence 4699999999986 45799999999999999999999999999999999999999999999998641 2345699999
Q ss_pred cCCCCCCC-CHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCC
Q 000711 520 QRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1338)
Q Consensus 520 Q~~~l~~~-tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ 598 (1338)
|++.++.. |++||+.++..... ...++.+.++++.+++.+..++.+ ..||||||||++||||++++|+
T Consensus 89 q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~~~p~ 157 (214)
T PRK13543 89 HLPGLKADLSTLENLHFLCGLHG---RRAKQMPGSALAIVGLAGYEDTLV--------RQLSAGQKKRLALARLWLSPAP 157 (214)
T ss_pred cCcccccCCcHHHHHHHHHHhcC---CcHHHHHHHHHHHcCChhhccCCh--------hhCCHHHHHHHHHHHHHhcCCC
Confidence 99988775 99999976432111 112345678889999887766654 6899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhH-hhcceEEEccC
Q 000711 599 FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDG 649 (1338)
Q Consensus 599 illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~-~~~d~i~~l~~ 649 (1338)
+++|||||++||+.+.+.+.+.+++ .|+|+|++||+++.+ ..+|++++++.
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 158 LWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999888754 489999999999977 58899998863
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-35 Score=333.61 Aligned_cols=204 Identities=21% Similarity=0.218 Sum_probs=162.8
Q ss_pred eEEeeeEEeCCCc----cccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc------cC
Q 000711 1100 ISFSKLDIITPSQ----KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE------AG 1169 (1338)
Q Consensus 1100 I~f~nV~f~yp~~----~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~------~~ 1169 (1338)
|+|+||++.|+.. +++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++... ..
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 7899999999743 3699999999999999999999999999999999999999999999999998531 22
Q ss_pred CcccEEEEcCCC--CCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCch-hhhhhhcccC
Q 000711 1170 SGCGIFYVPQRP--YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS-YLLEREEVGW 1246 (1338)
Q Consensus 1170 lr~~i~~VpQdP--~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~-~~i~~~~~Gl 1246 (1338)
.|.+++||+|+| .+|..|+.+|+.++... .+. .....+..+.++++.++|. .+..+
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~----------~~~------~~~~~~~~~~~~l~~~~L~~~~~~~----- 140 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQN----------FGI------PKEKAEKIAAEKLEMVGLADEFWEK----- 140 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHH----------cCC------CHHHHHHHHHHHHHHcCCChhhccC-----
Confidence 456799999998 78999999999753110 000 0000123345566666663 22222
Q ss_pred cccCcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCCCc-ccccceE
Q 000711 1247 DANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLEL 1322 (1338)
Q Consensus 1247 dt~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~~i-~~~d~~l 1322 (1338)
....||||||||++|||||+.+|++|||||||++||+++...+.+.+++ .|+|||+|+|+++.+ .++|+++
T Consensus 141 -----~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~ 215 (288)
T PRK13643 141 -----SPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVY 215 (288)
T ss_pred -----CcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE
Confidence 1357999999999999999999999999999999999999888776543 489999999999865 7899999
Q ss_pred EEecCCC
Q 000711 1323 RLIDGEG 1329 (1338)
Q Consensus 1323 ~l~~g~g 1329 (1338)
+|.+|+-
T Consensus 216 ~l~~G~i 222 (288)
T PRK13643 216 LLEKGHI 222 (288)
T ss_pred EEECCEE
Confidence 9977653
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=325.48 Aligned_cols=201 Identities=23% Similarity=0.253 Sum_probs=162.2
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccccCCcccEEEEcC
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 1179 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~~lr~~i~~VpQ 1179 (1338)
|+++|+++.|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++... +.+++|+||
T Consensus 2 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~---~~~~~~v~q 77 (255)
T PRK11248 2 LQISHLYADYGG-KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP---GAERGVVFQ 77 (255)
T ss_pred EEEEEEEEEeCC-eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC---CCcEEEEeC
Confidence 689999999965 6799999999999999999999999999999999999999999999999987642 235899999
Q ss_pred CCCCCC-CCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCCCh
Q 000711 1180 RPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 1258 (1338)
Q Consensus 1180 dP~LF~-GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSg 1258 (1338)
+|.+|. .|+++|+.++... .+.. ....+..+.++++.+++.....+. ..+|||
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~----------~~~~------~~~~~~~~~~~l~~~gl~~~~~~~----------~~~LSg 131 (255)
T PRK11248 78 NEGLLPWRNVQDNVAFGLQL----------AGVE------KMQRLEIAHQMLKKVGLEGAEKRY----------IWQLSG 131 (255)
T ss_pred CCccCCCCcHHHHHHhHHHH----------cCCC------HHHHHHHHHHHHHHcCChhHhhCC----------hhhCCH
Confidence 999887 6999999753210 0000 000123456677777775433221 356999
Q ss_pred hHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCc-ccccceEEEecCCCC
Q 000711 1259 GEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDGEGN 1330 (1338)
Q Consensus 1259 GQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i-~~~d~~l~l~~g~g~ 1330 (1338)
|||||++||||++++|++|||||||++||.++.+.+.+.+++ .|+|+|+|+|+++.+ .++|+++.|.+|+|.
T Consensus 132 Gq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~ 208 (255)
T PRK11248 132 GQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGR 208 (255)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcE
Confidence 999999999999999999999999999999999888776543 389999999999865 678999999765664
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=321.40 Aligned_cols=192 Identities=25% Similarity=0.389 Sum_probs=165.1
Q ss_pred CCcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCccccccEEEEecC
Q 000711 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521 (1338)
Q Consensus 442 ~~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q~ 521 (1338)
.+.|+++|+++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+||+
T Consensus 37 ~~~l~i~nls~~---~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------~i~yv~q~ 106 (282)
T cd03291 37 DNNLFFSNLCLV---GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------RISFSSQF 106 (282)
T ss_pred CCeEEEEEEEEe---cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------EEEEEeCc
Confidence 457999999985 36799999999999999999999999999999999999999999999987 59999999
Q ss_pred CCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCC
Q 000711 522 PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPK 598 (1338)
Q Consensus 522 ~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~ 598 (1338)
+++++.|++||+.++... ...++.++++.+++.+.++.++....+ ..+.+||||||||++|||||+.+|+
T Consensus 107 ~~l~~~tv~enl~~~~~~-------~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 179 (282)
T cd03291 107 SWIMPGTIKENIIFGVSY-------DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDAD 179 (282)
T ss_pred ccccccCHHHHhhccccc-------CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999875321 223456777888888888776643221 2357899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHH-Hc--cCCeEEEEecChhhHhhcceEEEccCC
Q 000711 599 FAILDECTSAVTTDMEERFCAKV-RA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1338)
Q Consensus 599 illLDEpts~LD~~~~~~i~~~l-~~--~~~t~i~itH~~~~~~~~d~i~~l~~~ 650 (1338)
++||||||++||+.+...+.+.+ ++ .+.|+|++||+++.+..||++++|+++
T Consensus 180 iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G 234 (282)
T cd03291 180 LYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 234 (282)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECC
Confidence 99999999999999999888753 22 478999999999999999999999863
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=314.54 Aligned_cols=192 Identities=28% Similarity=0.356 Sum_probs=164.8
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc---cccccEEEEec
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---DLNKEIFYVPQ 520 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~---~~~~~i~~v~Q 520 (1338)
.++++||++.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++|++|
T Consensus 2 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (207)
T PRK13539 2 MLEGEDLACVRGG-RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGH 80 (207)
T ss_pred EEEEEeEEEEECC-eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecC
Confidence 4789999999864 6799999999999999999999999999999999999999999999998641 14567999998
Q ss_pred CCCCC-CCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCE
Q 000711 521 RPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1338)
Q Consensus 521 ~~~l~-~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~i 599 (1338)
++.++ ..|++||+.+..... ...++++.++++.+++.++.++.+ .+||||||||++||||++++|++
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~la~al~~~p~l 148 (207)
T PRK13539 81 RNAMKPALTVAENLEFWAAFL----GGEELDIAAALEAVGLAPLAHLPF--------GYLSAGQKRRVALARLLVSNRPI 148 (207)
T ss_pred CCcCCCCCcHHHHHHHHHHhc----CCcHHHHHHHHHHcCCHHHHcCCh--------hhcCHHHHHHHHHHHHHhcCCCE
Confidence 87664 579999997643211 123456889999999987665544 58999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHhhcceEEEccC
Q 000711 600 AILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDG 649 (1338)
Q Consensus 600 llLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~~~d~i~~l~~ 649 (1338)
+||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+.. |+++.++.
T Consensus 149 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 149 WILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 999999999999999999988864 48999999999999887 99987753
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=325.43 Aligned_cols=197 Identities=24% Similarity=0.322 Sum_probs=161.0
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCC--CCCccEEEeCCCCc------c-ccccE
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW--PLVSGHIAKPGVGS------D-LNKEI 515 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~--~~~~G~i~~~~~~~------~-~~~~i 515 (1338)
|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+. +|++|+|.++|.+. . .+..+
T Consensus 1 l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 79 (243)
T TIGR01978 1 LKIKDLHVSVE-DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL 79 (243)
T ss_pred CeEeeEEEEEC-CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence 47899999996 468999999999999999999999999999999999994 79999999998641 1 13359
Q ss_pred EEEecCCCCCCC-CHHHHhcCCCCCCcc------cC-CCCHHHHHHHHHHcCCch-HHhcCCCCccccCCCCCChhHHHH
Q 000711 516 FYVPQRPYTAVG-TLRDQLIYPLTSDQE------VE-PLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGDELSLGEQQR 586 (1338)
Q Consensus 516 ~~v~Q~~~l~~~-tl~eni~~~~~~~~~------~~-~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~g~~LSgGqkQR 586 (1338)
+|+||+|.++.+ |++||+.+....... .. ...++++.++++.+++.+ ..++.+ ...||||||||
T Consensus 80 ~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-------~~~LS~G~~qr 152 (243)
T TIGR01978 80 FLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSV-------NEGFSGGEKKR 152 (243)
T ss_pred EeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhccccc-------ccCcCHHHHHH
Confidence 999999988765 899998764211000 00 011345778888899863 444433 13599999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHhh--cceEEEccC
Q 000711 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAF--HDVVLSLDG 649 (1338)
Q Consensus 587 lalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~~--~d~i~~l~~ 649 (1338)
++|||||+.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+.. +|++++|++
T Consensus 153 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~ 220 (243)
T TIGR01978 153 NEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLD 220 (243)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeC
Confidence 9999999999999999999999999999999998865 37899999999998864 799999986
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=325.43 Aligned_cols=202 Identities=22% Similarity=0.326 Sum_probs=161.8
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc---CCcccEEE
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA---GSGCGIFY 1176 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~---~lr~~i~~ 1176 (1338)
|+++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.... ..+.+++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRYGK-RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEeCC-EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 578999999964 56999999999999999999999999999999999999999999999999886542 23456999
Q ss_pred EcCCCCCCCC-CHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCC
Q 000711 1177 VPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 1255 (1338)
Q Consensus 1177 VpQdP~LF~G-TIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~ 1255 (1338)
+||+|.+|.+ |+++|+.++... .+. .....+..+.++++.+++.....+ ....
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~----------~~~------~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~ 133 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEI----------RGL------SKKEREEKLEELLEEFHITHLRKS----------KASS 133 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHh----------cCC------CHHHHHHHHHHHHHHcCChhhhhC----------Chhh
Confidence 9999999987 999999753210 000 000012234456666666433222 2357
Q ss_pred CChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCC-CcccccceEEEecCC
Q 000711 1256 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPA-LIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1256 LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~-~i~~~d~~l~l~~g~ 1328 (1338)
||||||||++||||++++|++|||||||++||.++.+.+.+.+++ .++|+|+++|+++ ..+++|++++|.+|+
T Consensus 134 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~ 210 (232)
T cd03218 134 LSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGK 210 (232)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 999999999999999999999999999999999999888776543 4899999999995 677899999997765
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=315.24 Aligned_cols=175 Identities=26% Similarity=0.318 Sum_probs=146.8
Q ss_pred CCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc--------cccccEEEEecCC--CC
Q 000711 455 PTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------DLNKEIFYVPQRP--YT 524 (1338)
Q Consensus 455 ~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~--------~~~~~i~~v~Q~~--~l 524 (1338)
++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.++|+||+| .+
T Consensus 2 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred CCccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 3456799999999999999999999999999999999999999999999998541 2345799999998 46
Q ss_pred CCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEEEec
Q 000711 525 AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604 (1338)
Q Consensus 525 ~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~illLDE 604 (1338)
+..|++||+.++............+++.++++.+++.+..++.+ .+||||||||++|||||+++|+++||||
T Consensus 82 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 82 FAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPT--------HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 77899999987532110000112346778899999988877765 6899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhh
Q 000711 605 CTSAVTTDMEERFCAKVRA---MGTSCITISHRPAL 637 (1338)
Q Consensus 605 pts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~ 637 (1338)
||++||+.+.+.+.+.+++ .|+|+|++||+++.
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 9999999999999988764 48999999999864
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=326.49 Aligned_cols=196 Identities=27% Similarity=0.336 Sum_probs=163.4
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC--ccc-cccEEEEec
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--SDL-NKEIFYVPQ 520 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~--~~~-~~~i~~v~Q 520 (1338)
.++++||++.|++++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ... ++.++|+||
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q 85 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQ 85 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEecc
Confidence 58999999999766789999999999999999999999999999999999999999999999864 112 246999999
Q ss_pred CCCC---CCCCHHHHhcCCCCCC----cccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHH
Q 000711 521 RPYT---AVGTLRDQLIYPLTSD----QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1338)
Q Consensus 521 ~~~l---~~~tl~eni~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal 593 (1338)
+|.+ +..++++|+.++.... .......++++.++++.+++.+..++.+ .+||||||||++|||||
T Consensus 86 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LSgG~~qrv~laraL 157 (272)
T PRK15056 86 SEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI--------GELSGGQKKRVFLARAI 157 (272)
T ss_pred ccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc--------ccCCHHHHHHHHHHHHH
Confidence 9864 3457899987642110 0000112345678899999988777655 68999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhH-hhcceEEEc
Q 000711 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSL 647 (1338)
Q Consensus 594 ~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~-~~~d~i~~l 647 (1338)
+.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+ ..||+++.+
T Consensus 158 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~ 215 (272)
T PRK15056 158 AQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV 215 (272)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999988864 489999999999876 578999777
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=327.64 Aligned_cols=198 Identities=23% Similarity=0.266 Sum_probs=164.1
Q ss_pred CcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCC-----CCccEEEeCCCCc--------
Q 000711 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS-------- 509 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~-----~~~G~i~~~~~~~-------- 509 (1338)
..++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+.
T Consensus 20 ~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 20 HILEVKDLSIYYG-EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred ceEEEEEEEEEeC-CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 4699999999996 4679999999999999999999999999999999999864 7999999998541
Q ss_pred cccccEEEEecCCCCCCCCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCCc----hHHhcCCCCccccCCCCCChhHH
Q 000711 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLE----YLLDRYPPEKEINWGDELSLGEQ 584 (1338)
Q Consensus 510 ~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~~~~~~g~~LSgGqk 584 (1338)
..++.++|+||++.++.+|++||+.++....... ....++.+.++++.+++. +..++. ..+||||||
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LSgGq~ 170 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSS--------ALSLSGGQQ 170 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcC--------cccCCHHHH
Confidence 2356799999999998899999998753211100 011234567788888874 233333 368999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhH-hhcceEEEccC
Q 000711 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 649 (1338)
Q Consensus 585 QRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~-~~~d~i~~l~~ 649 (1338)
||++|||||+.+|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+ ..||++++|++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~ 238 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLN 238 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999998865 368999999999876 57999999986
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=325.18 Aligned_cols=203 Identities=25% Similarity=0.267 Sum_probs=162.0
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc--CCcccEEEE
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFYV 1177 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~--~lr~~i~~V 1177 (1338)
++++||++.|++.+++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.++.... ..+.+++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 478999999975356999999999999999999999999999999999999999999999999887642 335579999
Q ss_pred cCCCCCCC-CCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchh--hhhhhcccCcccCcccC
Q 000711 1178 PQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSY--LLEREEVGWDANLNWED 1254 (1338)
Q Consensus 1178 pQdP~LF~-GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~--~i~~~~~Gldt~~~~g~ 1254 (1338)
||+|.+|. .|++||+.++... .+.. ....++.+.++++.+++.. ...+ ...
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~----------~~~~------~~~~~~~~~~~l~~l~l~~~~~~~~----------~~~ 134 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPKL----------LKWP------KEKIRERADELLALVGLDPAEFADR----------YPH 134 (242)
T ss_pred ccCccccCCCcHHHHHHHHHHH----------cCCC------HHHHHHHHHHHHHHcCCCcHHHHhc----------Chh
Confidence 99999996 6999999653100 0000 0001233556667666642 2111 235
Q ss_pred CCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCC-cccccceEEEecCC
Q 000711 1255 ILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPAL-IPFHSLELRLIDGE 1328 (1338)
Q Consensus 1255 ~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~-i~~~d~~l~l~~g~ 1328 (1338)
+||||||||++||||++++|+++||||||++||.++.+.+.+.+++ .|+|+|+|+|+++. ..++|+++.|.+|+
T Consensus 135 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~ 213 (242)
T cd03295 135 ELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGE 213 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 7999999999999999999999999999999999999887766543 38999999999984 57899999997765
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=325.76 Aligned_cols=209 Identities=20% Similarity=0.237 Sum_probs=165.2
Q ss_pred ceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCC---CCCceEEcCCCCCccc--cCCccc
Q 000711 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP---VVSGSLTKPSQHIDEE--AGSGCG 1173 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~---~~sG~I~idg~dI~~~--~~lr~~ 1173 (1338)
.|+++||++.|++ +++|+|+||+|++||.++|+||||||||||+++|.|+++ |++|+|.+||.++... ...|.+
T Consensus 2 ~~~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 2 IAKTTNLNLFYGK-KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80 (246)
T ss_pred ceeeeeeEEEECC-EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence 4789999999974 579999999999999999999999999999999999985 6899999999998765 234557
Q ss_pred EEEEcCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCccc
Q 000711 1174 IFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 1253 (1338)
Q Consensus 1174 i~~VpQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g 1253 (1338)
++|+||+|.+|..|+++|+.++... .+. . ......+..+.++++.+++...+... ++ ...
T Consensus 81 i~~~~q~~~l~~~tv~eni~~~~~~----------~~~---~-~~~~~~~~~~~~~l~~~~l~~~~~~~---~~---~~~ 140 (246)
T PRK14269 81 VGMVFQQPNVFVKSIYENISYAPKL----------HGM---I-KNKDEEEALVVDCLQKVGLFEEVKDK---LK---QNA 140 (246)
T ss_pred EEEEecCCccccccHHHHhhhHHhh----------cCc---c-cChHHHHHHHHHHHHHcCCChhhhHH---hc---CCc
Confidence 9999999999999999999753210 000 0 00001123455667777764322111 01 124
Q ss_pred CCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCC-cccccceEEEecCC
Q 000711 1254 DILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPAL-IPFHSLELRLIDGE 1328 (1338)
Q Consensus 1254 ~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~-i~~~d~~l~l~~g~ 1328 (1338)
.+||||||||++||||++++|+++||||||++||.++...+.+.+++ .++|+|+|+|+++. .+++|+++.|.+|+
T Consensus 141 ~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~ 218 (246)
T PRK14269 141 LALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGE 218 (246)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCE
Confidence 67999999999999999999999999999999999999888776643 48999999999985 56899999997765
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=322.98 Aligned_cols=200 Identities=22% Similarity=0.335 Sum_probs=158.0
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc---CCcccEEE
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA---GSGCGIFY 1176 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~---~lr~~i~~ 1176 (1338)
|+++||++.|++ .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.... ..+.+++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGYGK-SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred CEEeeEEeecCC-eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 578999999975 47999999999999999999999999999999999999999999999999887652 22457999
Q ss_pred EcCCCCCCCC-CHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhC-CchhhhhhhcccCcccCcccC
Q 000711 1177 VPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGV-RLSYLLEREEVGWDANLNWED 1254 (1338)
Q Consensus 1177 VpQdP~LF~G-TIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~-~L~~~i~~~~~Gldt~~~~g~ 1254 (1338)
|||+|.+|.+ |+++|+.++...... ......+.++++.+ ++.. .+++. ..
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~------------------~~~~~~~~~~l~~~~~l~~-------~~~~~---~~ 131 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARRR------------------AKRKARLERVYELFPRLKE-------RRKQL---AG 131 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcCc------------------hhHHHHHHHHHHHHHhhhh-------hhhCc---hh
Confidence 9999999987 999999764211000 00011222333333 1211 11222 34
Q ss_pred CCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCCC-cccccceEEEecCC
Q 000711 1255 ILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPAL-IPFHSLELRLIDGE 1328 (1338)
Q Consensus 1255 ~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~~-i~~~d~~l~l~~g~ 1328 (1338)
.||||||||++||||++++|++|||||||++||.++.+.+.+.+++ .++|+|+++|+++. ..++|+++.+.+|+
T Consensus 132 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 209 (222)
T cd03224 132 TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGR 209 (222)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCe
Confidence 6999999999999999999999999999999999999888776643 48999999999985 57799999997654
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=321.68 Aligned_cols=195 Identities=27% Similarity=0.394 Sum_probs=166.3
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc----cccccEEEEec
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----DLNKEIFYVPQ 520 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~----~~~~~i~~v~Q 520 (1338)
|+++|+++.|++ ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++|+||
T Consensus 1 l~~~~l~~~~~~--~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q 78 (235)
T cd03299 1 LKVENLSKDWKE--FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQ 78 (235)
T ss_pred CeeEeEEEEeCC--ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEee
Confidence 468999999864 389999999999999999999999999999999999999999999998641 12457999999
Q ss_pred CCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCE
Q 000711 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1338)
Q Consensus 521 ~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~i 599 (1338)
++.++. .|++||+.++...........++++.++++.+++.++.++.+ .+||||||||++||||++++|++
T Consensus 79 ~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~laral~~~p~l 150 (235)
T cd03299 79 NYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP--------ETLSGGEQQRVAIARALVVNPKI 150 (235)
T ss_pred cCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc--------ccCCHHHHHHHHHHHHHHcCCCE
Confidence 998875 699999987532111001112346778899999998888876 68999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 600 llLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
++|||||++||+.+.+.+.+.+++ .++|+|++||++..+. .+|++++|++
T Consensus 151 lllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~ 205 (235)
T cd03299 151 LLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLN 205 (235)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 999999999999999999988764 2899999999999875 6999999986
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=325.87 Aligned_cols=198 Identities=26% Similarity=0.304 Sum_probs=163.3
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCC-----CccEEEeCCCCc--------c
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS--------D 510 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~-----~~G~i~~~~~~~--------~ 510 (1338)
.++++||++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.+. .
T Consensus 4 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 4 AIETVNLRVYYGS-NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred eEEEEeEEEEeCC-eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence 5899999999964 6799999999999999999999999999999999999987 499999998641 2
Q ss_pred ccccEEEEecCCCCCCC-CHHHHhcCCCCCCcc--cCCCCHHHHHHHHHHcCCchH----HhcCCCCccccCCCCCChhH
Q 000711 511 LNKEIFYVPQRPYTAVG-TLRDQLIYPLTSDQE--VEPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGE 583 (1338)
Q Consensus 511 ~~~~i~~v~Q~~~l~~~-tl~eni~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~----~~~~~~~~~~~~g~~LSgGq 583 (1338)
++++++|+||++.++.. |+.||+.++...... .....++++.++++.+++... .++. ..+|||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LS~G~ 154 (253)
T PRK14267 83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDY--------PSNLSGGQ 154 (253)
T ss_pred HhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccC--------hhhCCHHH
Confidence 34679999999988865 999999875321100 001123456788888887532 2222 36899999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhHh-hcceEEEccCC
Q 000711 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 584 kQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
|||++||||++++|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+. .||++++|+++
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 224 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLG 224 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECC
Confidence 9999999999999999999999999999999999998865 3689999999999864 69999999863
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=341.77 Aligned_cols=203 Identities=20% Similarity=0.332 Sum_probs=165.3
Q ss_pred ceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccccCCcccEEEEc
Q 000711 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 1178 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~~lr~~i~~Vp 1178 (1338)
.|+++|+++.|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.++|.++......+++|+|||
T Consensus 3 ~l~i~~l~~~~~~-~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~ 81 (369)
T PRK11000 3 SVTLRNVTKAYGD-VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVF 81 (369)
T ss_pred EEEEEEEEEEeCC-eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEe
Confidence 4899999999964 569999999999999999999999999999999999999999999999999876643445799999
Q ss_pred CCCCCCCC-CHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCCC
Q 000711 1179 QRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 1257 (1338)
Q Consensus 1179 QdP~LF~G-TIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LS 1257 (1338)
|+|.+|.. |++||+.++.... +. .....++.+.++++.++|..+.++. ..+||
T Consensus 82 Q~~~l~~~~tv~eni~~~~~~~----------~~------~~~~~~~~~~~~l~~lgL~~~~~~~----------~~~LS 135 (369)
T PRK11000 82 QSYALYPHLSVAENMSFGLKLA----------GA------KKEEINQRVNQVAEVLQLAHLLDRK----------PKALS 135 (369)
T ss_pred CCcccCCCCCHHHHHHhHHhhc----------CC------CHHHHHHHHHHHHHHcCChhhhcCC----------hhhCC
Confidence 99999975 9999998753100 00 0000123456677777775544332 24699
Q ss_pred hhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCC-CcccccceEEEecCC
Q 000711 1258 LGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPA-LIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1258 gGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~-~i~~~d~~l~l~~g~ 1328 (1338)
||||||++|||||+++|++||||||||+||..+.+.+.+.+++ .+.|+|+|+|+++ ...++|++++|.+|+
T Consensus 136 gGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~ 211 (369)
T PRK11000 136 GGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGR 211 (369)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999998877665432 4899999999997 457899999997664
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=320.57 Aligned_cols=203 Identities=22% Similarity=0.257 Sum_probs=164.0
Q ss_pred ceEEeeeEEeCCCc---cccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc------C
Q 000711 1099 SISFSKLDIITPSQ---KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA------G 1169 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~---~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~------~ 1169 (1338)
.|+++||++.|++. .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 58999999999753 36999999999999999999999999999999999999999999999999887642 1
Q ss_pred CcccEEEEcCCCCCCCC-CHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcc
Q 000711 1170 SGCGIFYVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDA 1248 (1338)
Q Consensus 1170 lr~~i~~VpQdP~LF~G-TIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt 1248 (1338)
++.+++|+||+|.+|.+ |++||+.++.... +. ......+.+.++++.+++....++.
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~----------~~------~~~~~~~~~~~~l~~~~l~~~~~~~------ 143 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLR----------GE------SSRQSRNGAKALLEQLGLGKRLDHL------ 143 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhc----------CC------CHHHHHHHHHHHHHHcCCHhHhhCC------
Confidence 23479999999999875 9999996531000 00 0000123455667777775444332
Q ss_pred cCcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCcccccceEEE
Q 000711 1249 NLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALIPFHSLELRL 1324 (1338)
Q Consensus 1249 ~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i~~~d~~l~l 1324 (1338)
...||||||||++|||||+++|++|||||||++||.++.+.+.+.+++ .+.|||+|+|+++.+..+|+++++
T Consensus 144 ----~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l 219 (228)
T PRK10584 144 ----PAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRL 219 (228)
T ss_pred ----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEE
Confidence 246999999999999999999999999999999999999887776532 389999999999888889999999
Q ss_pred ecC
Q 000711 1325 IDG 1327 (1338)
Q Consensus 1325 ~~g 1327 (1338)
.+|
T Consensus 220 ~~g 222 (228)
T PRK10584 220 VNG 222 (228)
T ss_pred ECC
Confidence 655
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=322.70 Aligned_cols=200 Identities=28% Similarity=0.361 Sum_probs=158.0
Q ss_pred eEEeeeEEeCCCc---cccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc-----CCc
Q 000711 1100 ISFSKLDIITPSQ---KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSG 1171 (1338)
Q Consensus 1100 I~f~nV~f~yp~~---~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~-----~lr 1171 (1338)
|+++||++.|++. .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.++.... ..|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 7899999999754 37999999999999999999999999999999999999999999999999887643 345
Q ss_pred ccEEEEcCCC--CCC-CCCHHHHhcCCCc-----hHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCch-hhhhhh
Q 000711 1172 CGIFYVPQRP--YTC-LGTLRDQIIYPLS-----REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS-YLLERE 1242 (1338)
Q Consensus 1172 ~~i~~VpQdP--~LF-~GTIReNL~~p~~-----~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~-~~i~~~ 1242 (1338)
++++|+||+| .++ ..|+++|+.++.. ..++.. +....++++.+++. ...++
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~-------------------~~~~~~~l~~~~l~~~~~~~- 141 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEAR-------------------KEAVLLLLVGVGLPEEVLNR- 141 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHH-------------------HHHHHHHHHHCCCChhHhhC-
Confidence 6799999999 344 5799999964210 000000 00012445555552 22211
Q ss_pred cccCcccCcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCcc-c
Q 000711 1243 EVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALIP-F 1317 (1338)
Q Consensus 1243 ~~Gldt~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i~-~ 1317 (1338)
...+||||||||++||||++++|++|||||||++||.++.+.+.+.+++ .|+|+|+++|+++.+. +
T Consensus 142 ---------~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~ 212 (228)
T cd03257 142 ---------YPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKI 212 (228)
T ss_pred ---------CchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 1356999999999999999999999999999999999999888776543 2899999999998766 8
Q ss_pred ccceEEEecCC
Q 000711 1318 HSLELRLIDGE 1328 (1338)
Q Consensus 1318 ~d~~l~l~~g~ 1328 (1338)
+|+++.|.+|+
T Consensus 213 ~d~i~~l~~G~ 223 (228)
T cd03257 213 ADRVAVMYAGK 223 (228)
T ss_pred cCeEEEEeCCE
Confidence 99999997653
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=310.58 Aligned_cols=169 Identities=27% Similarity=0.357 Sum_probs=150.8
Q ss_pred eEEeeeEEeCCCc-cccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc-cCCcccEEEE
Q 000711 1100 ISFSKLDIITPSQ-KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-AGSGCGIFYV 1177 (1338)
Q Consensus 1100 I~f~nV~f~yp~~-~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~-~~lr~~i~~V 1177 (1338)
|+++|+++.|++. +++++|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.+||.++... ...+.+++|+
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 5799999999764 5799999999999999999999999999999999999999999999999987654 2234579999
Q ss_pred cCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCCC
Q 000711 1178 PQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 1257 (1338)
Q Consensus 1178 pQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LS 1257 (1338)
||+|.+|++|++||+ + ..||
T Consensus 81 ~q~~~~~~~tv~~~i--~----------------------------------------------------------~~LS 100 (178)
T cd03247 81 NQRPYLFDTTLRNNL--G----------------------------------------------------------RRFS 100 (178)
T ss_pred ccCCeeecccHHHhh--c----------------------------------------------------------ccCC
Confidence 999999999999987 1 1379
Q ss_pred hhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1258 LGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1258 gGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
+|||||++||||++++|++|||||||++||.++.+.+.+.+++ .++|+|+++|+++.+..+|+++.+.+|.
T Consensus 101 ~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 173 (178)
T cd03247 101 GGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGK 173 (178)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999888777653 4899999999999889999999997653
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=307.23 Aligned_cols=166 Identities=31% Similarity=0.482 Sum_probs=149.4
Q ss_pred eEEeeeEEeCCC-ccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc--CCcccEEE
Q 000711 1100 ISFSKLDIITPS-QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFY 1176 (1338)
Q Consensus 1100 I~f~nV~f~yp~-~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~--~lr~~i~~ 1176 (1338)
|+++|++++|++ ..++++|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.... ..+.+++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 578999999975 357999999999999999999999999999999999999999999999999887652 34567999
Q ss_pred EcCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCC
Q 000711 1177 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDIL 1256 (1338)
Q Consensus 1177 VpQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~L 1256 (1338)
+||+|.+|++|+++|+ |
T Consensus 81 ~~q~~~~~~~tv~~~l---------------------------------------------------------------L 97 (173)
T cd03246 81 LPQDDELFSGSIAENI---------------------------------------------------------------L 97 (173)
T ss_pred ECCCCccccCcHHHHC---------------------------------------------------------------c
Confidence 9999999988988875 3
Q ss_pred ChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1257 SLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1257 SgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
|||||||++||||++++|++|||||||++||..+.+.+.+.++. .++|+|+++|+++.+..+|+++.|.+|+
T Consensus 98 S~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~ 172 (173)
T cd03246 98 SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGR 172 (173)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCC
Confidence 99999999999999999999999999999999999888776543 4899999999999889999999997653
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=340.14 Aligned_cols=203 Identities=24% Similarity=0.316 Sum_probs=167.9
Q ss_pred ceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccccCCcccEEEEc
Q 000711 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 1178 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~~lr~~i~~Vp 1178 (1338)
.++++|++++|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++......+++|+||+
T Consensus 14 ~L~l~~l~~~~~~-~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vf 92 (375)
T PRK09452 14 LVELRGISKSFDG-KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVF 92 (375)
T ss_pred eEEEEEEEEEECC-eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 5999999999964 569999999999999999999999999999999999999999999999999977643445799999
Q ss_pred CCCCCCCC-CHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCCC
Q 000711 1179 QRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 1257 (1338)
Q Consensus 1179 QdP~LF~G-TIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LS 1257 (1338)
|++.||.. |++|||.|+.... +. .....+..+.++++.++|..+.++.| .+||
T Consensus 93 Q~~~lfp~ltv~eNi~~~l~~~----------~~------~~~~~~~~~~~~l~~~~l~~~~~~~p----------~~LS 146 (375)
T PRK09452 93 QSYALFPHMTVFENVAFGLRMQ----------KT------PAAEITPRVMEALRMVQLEEFAQRKP----------HQLS 146 (375)
T ss_pred cCcccCCCCCHHHHHHHHHhhc----------CC------CHHHHHHHHHHHHHHcCCchhhhCCh----------hhCC
Confidence 99999975 9999998764210 00 00001234556677777766555543 4699
Q ss_pred hhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHH----hcCCeEEEeccCCC-CcccccceEEEecCC
Q 000711 1258 LGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAK----DMGITFVTSSQRPA-LIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1258 gGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~----~~~~TvI~IAHRl~-~i~~~d~~l~l~~g~ 1328 (1338)
||||||+||||||+++|++|+||||||+||..+.+.+.+.++ +.|+|+|.|+|+.. ...++|++++|.+|+
T Consensus 147 gGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~ 222 (375)
T PRK09452 147 GGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGR 222 (375)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999887776553 24899999999997 567899999998765
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=323.65 Aligned_cols=199 Identities=21% Similarity=0.242 Sum_probs=164.2
Q ss_pred CcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCC-----CccEEEeCCCCc--------
Q 000711 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS-------- 509 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~-----~~G~i~~~~~~~-------- 509 (1338)
+.++++||++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 2 ~~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14240 2 GKISVKDLDLFYGD-FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVN 80 (250)
T ss_pred CeEEEEEEEEEECC-ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence 35899999999964 6799999999999999999999999999999999999863 699999998641
Q ss_pred cccccEEEEecCCCCCCCCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCCchH----HhcCCCCccccCCCCCChhHH
Q 000711 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQ 584 (1338)
Q Consensus 510 ~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~----~~~~~~~~~~~~g~~LSgGqk 584 (1338)
.+++.++|+||+|.++..|++||+.++....... ....++++.++++.+++.+. .++. ..+||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LS~G~~ 152 (250)
T PRK14240 81 QLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKS--------ALGLSGGQQ 152 (250)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcC--------CCCCCHHHH
Confidence 2356799999999988899999998753211100 01124566778888887532 2332 368999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 585 QRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
||++|||||+.+|++++|||||++||+.++..+.+.+++ .++|+|++||+++.+ ..+|++++|+++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G 221 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNG 221 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECC
Confidence 999999999999999999999999999999999998865 378999999999976 469999999863
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=325.09 Aligned_cols=196 Identities=24% Similarity=0.324 Sum_probs=165.4
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCC--------ccEEEeCCCCc------c
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV--------SGHIAKPGVGS------D 510 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~--------~G~i~~~~~~~------~ 510 (1338)
++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+. .
T Consensus 2 l~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 2 LTADHLHVARR-HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred eEEEEEEEEEC-CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence 78999999985 468999999999999999999999999999999999999998 99999998641 2
Q ss_pred ccccEEEEecCCC-CCCCCHHHHhcCCCCCCc----ccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHH
Q 000711 511 LNKEIFYVPQRPY-TAVGTLRDQLIYPLTSDQ----EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQ 585 (1338)
Q Consensus 511 ~~~~i~~v~Q~~~-l~~~tl~eni~~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQ 585 (1338)
.++.++|+||++. ++..|++||+.++..... ......++.+.++++.+++.+..++.+ .+|||||||
T Consensus 81 ~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~q 152 (272)
T PRK13547 81 LARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDV--------TTLSGGELA 152 (272)
T ss_pred HHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCc--------ccCCHHHHH
Confidence 3456899999985 567899999987532110 001112345778999999988777654 689999999
Q ss_pred HHHHHHHHc---------cCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 586 RLGMARLFY---------HKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 586 RlalARal~---------~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
|++|||||+ .+|+++||||||++||+.+.+.+.+.+++ .|+|+|+|||+++.+. .||++++|++
T Consensus 153 rv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~ 230 (272)
T PRK13547 153 RVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLAD 230 (272)
T ss_pred HHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 999999999 59999999999999999999999988764 2799999999999885 7999999986
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=338.79 Aligned_cols=204 Identities=18% Similarity=0.264 Sum_probs=167.9
Q ss_pred CceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCC--ceEEcCCCCCccccCCcccEE
Q 000711 1098 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVS--GSLTKPSQHIDEEAGSGCGIF 1175 (1338)
Q Consensus 1098 g~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~s--G~I~idg~dI~~~~~lr~~i~ 1175 (1338)
|.|+++||++.|++ ..+|+|+||+|++||.++|+||||||||||+++|.|+++|++ |+|.+||.++......+++|+
T Consensus 4 ~~l~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig 82 (362)
T TIGR03258 4 GGIRIDHLRVAYGA-NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLA 82 (362)
T ss_pred eEEEEEEEEEEECC-eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEE
Confidence 68999999999965 569999999999999999999999999999999999999999 999999999876643445799
Q ss_pred EEcCCCCCCCC-CHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccC
Q 000711 1176 YVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWED 1254 (1338)
Q Consensus 1176 ~VpQdP~LF~G-TIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~ 1254 (1338)
||+|+|.||.. |+++||.|+.... +. .....+..+.++++.++|.++.++.| .
T Consensus 83 ~vfQ~~~l~p~~tv~enl~~~l~~~----------~~------~~~~~~~~v~~~l~~~gL~~~~~~~~----------~ 136 (362)
T TIGR03258 83 LLFQNYALFPHLKVEDNVAFGLRAQ----------KM------PKADIAERVADALKLVGLGDAAAHLP----------A 136 (362)
T ss_pred EEECCcccCCCCcHHHHHHHHHHHc----------CC------CHHHHHHHHHHHHHhcCCCchhhCCh----------h
Confidence 99999999976 9999998753200 00 00001234566777788766555443 4
Q ss_pred CCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHH----hc-CCeEEEeccCCC-CcccccceEEEecCC
Q 000711 1255 ILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAK----DM-GITFVTSSQRPA-LIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1255 ~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~----~~-~~TvI~IAHRl~-~i~~~d~~l~l~~g~ 1328 (1338)
+||||||||+||||||+++|++|+||||||+||..+.+.+.+.++ +. |+|+|.|+|.++ ....+|++++|.+|+
T Consensus 137 ~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~ 216 (362)
T TIGR03258 137 QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGR 216 (362)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 699999999999999999999999999999999999887766543 23 799999999997 467899999997664
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=326.47 Aligned_cols=203 Identities=21% Similarity=0.259 Sum_probs=163.6
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc-----------
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA----------- 1168 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~----------- 1168 (1338)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++....
T Consensus 1 i~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRFGI-LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEeCC-eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 579999999974 57999999999999999999999999999999999999999999999999886431
Q ss_pred ----CCcccEEEEcCCCCCCC-CCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhc
Q 000711 1169 ----GSGCGIFYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREE 1243 (1338)
Q Consensus 1169 ----~lr~~i~~VpQdP~LF~-GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~ 1243 (1338)
..+++++||||+|.+|. .|+++|+.++.... .+. .....++.+.++++.+++....++.
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~---------~~~------~~~~~~~~~~~~l~~~gl~~~~~~~- 143 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV---------LGM------ARAEAEKRAMELLDMVGLADKADHM- 143 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh---------cCC------CHHHHHHHHHHHHHHcCChhHhhcC-
Confidence 23557999999999885 79999997531000 000 0001133456677777775444332
Q ss_pred ccCcccCcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCc-ccc
Q 000711 1244 VGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFH 1318 (1338)
Q Consensus 1244 ~Gldt~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i-~~~ 1318 (1338)
...||||||||++||||++++|+++||||||++||+++...+.+.+++ .++|+|+|+|+++.+ +++
T Consensus 144 ---------~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~ 214 (252)
T TIGR03005 144 ---------PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFA 214 (252)
T ss_pred ---------hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhc
Confidence 356999999999999999999999999999999999999887776543 389999999999876 689
Q ss_pred cceEEEecCC
Q 000711 1319 SLELRLIDGE 1328 (1338)
Q Consensus 1319 d~~l~l~~g~ 1328 (1338)
|++++|.+|+
T Consensus 215 d~i~~l~~G~ 224 (252)
T TIGR03005 215 DRVCFFDKGR 224 (252)
T ss_pred CEEEEEECCE
Confidence 9999997765
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-35 Score=333.31 Aligned_cols=203 Identities=22% Similarity=0.237 Sum_probs=162.0
Q ss_pred eEEeeeEEeCCCc----cccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc------cC
Q 000711 1100 ISFSKLDIITPSQ----KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE------AG 1169 (1338)
Q Consensus 1100 I~f~nV~f~yp~~----~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~------~~ 1169 (1338)
|+++||++.|++. .++|+|+||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.++... ..
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 7899999999752 5799999999999999999999999999999999999999999999999988531 22
Q ss_pred CcccEEEEcCCC--CCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCch-hhhhhhcccC
Q 000711 1170 SGCGIFYVPQRP--YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS-YLLEREEVGW 1246 (1338)
Q Consensus 1170 lr~~i~~VpQdP--~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~-~~i~~~~~Gl 1246 (1338)
.+++++||||+| .+|+.|+++||.++... .+.. .+...+.+.++++.++|. .+.++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~----------~~~~------~~~~~~~~~~~l~~~gL~~~~~~~----- 141 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMN----------FGVS------EEDAKQKAREMIELVGLPEELLAR----- 141 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHH----------cCCC------HHHHHHHHHHHHHHCCCChhhhhC-----
Confidence 345799999998 68889999999753110 0000 000112345566777764 22221
Q ss_pred cccCcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCc-ccccce
Q 000711 1247 DANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLE 1321 (1338)
Q Consensus 1247 dt~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i-~~~d~~ 1321 (1338)
....||||||||++|||||+.+|++||||||||+||+.+...+.+++++ .|.|||+|+|+++.+ +++|++
T Consensus 142 -----~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv 216 (290)
T PRK13634 142 -----SPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQI 216 (290)
T ss_pred -----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 1357999999999999999999999999999999999999887776543 389999999999865 789999
Q ss_pred EEEecCC
Q 000711 1322 LRLIDGE 1328 (1338)
Q Consensus 1322 l~l~~g~ 1328 (1338)
+.|.+|+
T Consensus 217 ~~l~~G~ 223 (290)
T PRK13634 217 VVMHKGT 223 (290)
T ss_pred EEEECCE
Confidence 9997765
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=323.61 Aligned_cols=202 Identities=22% Similarity=0.242 Sum_probs=164.3
Q ss_pred CcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCC--C---CccEEEeCCCCc--------
Q 000711 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP--L---VSGHIAKPGVGS-------- 509 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~--~---~~G~i~~~~~~~-------- 509 (1338)
+.++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 3 ~~l~~~nl~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 3 NKVKLEQLNVHFG-KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred cEEEEEEEEEEeC-CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence 4689999999996 4689999999999999999999999999999999999986 4 699999998541
Q ss_pred cccccEEEEecCCCCCC-CCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHH
Q 000711 510 DLNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRL 587 (1338)
Q Consensus 510 ~~~~~i~~v~Q~~~l~~-~tl~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRl 587 (1338)
.+++.++|+||++.++. .|++||+.++....... ....++++.++++.+++...+.... + ....+||||||||+
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~---~~~~~LS~G~~qrl 157 (252)
T PRK14256 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRL-K---SNAMELSGGQQQRL 157 (252)
T ss_pred HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHh-h---CCcCcCCHHHHHHH
Confidence 23567999999998887 59999998753211100 0112345678888888864322110 0 11368999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHcc--CCeEEEEecChhhH-hhcceEEEccC
Q 000711 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALV-AFHDVVLSLDG 649 (1338)
Q Consensus 588 alARal~~~p~illLDEpts~LD~~~~~~i~~~l~~~--~~t~i~itH~~~~~-~~~d~i~~l~~ 649 (1338)
+||||++.+|+++||||||++||+.+.+.+++.+++. ++|+|++||+++.+ ..||++++|++
T Consensus 158 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~ 222 (252)
T PRK14256 158 CIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYM 222 (252)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEEC
Confidence 9999999999999999999999999999999988653 78999999999987 57999999986
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=324.63 Aligned_cols=198 Identities=19% Similarity=0.247 Sum_probs=167.2
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCC---ccEEEeCCCCc-----------
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV---SGHIAKPGVGS----------- 509 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~---~G~i~~~~~~~----------- 509 (1338)
.++++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+.
T Consensus 4 ~l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (262)
T PRK09984 4 IIRVEKLAKTFN-QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR 82 (262)
T ss_pred EEEEeeEEEEeC-CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHH
Confidence 689999999986 468999999999999999999999999999999999999986 49999999641
Q ss_pred cccccEEEEecCCCCCC-CCHHHHhcCCCCCCc--------ccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCC
Q 000711 510 DLNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQ--------EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELS 580 (1338)
Q Consensus 510 ~~~~~i~~v~Q~~~l~~-~tl~eni~~~~~~~~--------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LS 580 (1338)
.+++.++|+||++.++. .|++||+.++..... ........++.++++.+++.+..++.+ .+||
T Consensus 83 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS 154 (262)
T PRK09984 83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV--------STLS 154 (262)
T ss_pred HHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc--------cccC
Confidence 12356999999998776 599999987632110 001112356788999999988777755 6899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 581 LGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 581 gGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
||||||++||||++.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+ ..||++++++++
T Consensus 155 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 155 GGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999988764 379999999999975 689999999863
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=328.93 Aligned_cols=203 Identities=19% Similarity=0.183 Sum_probs=164.7
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc---CCcccEEE
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA---GSGCGIFY 1176 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~---~lr~~i~~ 1176 (1338)
|+++||++.|++.+++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.++.... ..+.+++|
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (274)
T PRK13644 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGI 81 (274)
T ss_pred EEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEE
Confidence 689999999976667999999999999999999999999999999999999999999999999886542 33457999
Q ss_pred EcCCCC--CCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccC
Q 000711 1177 VPQRPY--TCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWED 1254 (1338)
Q Consensus 1177 VpQdP~--LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~ 1254 (1338)
|||+|. ++..|+++||.++.... +. .....+..+.++++.+++....++. ..
T Consensus 82 v~q~~~~~~~~~tv~enl~~~~~~~----------~~------~~~~~~~~~~~~l~~~gl~~~~~~~----------~~ 135 (274)
T PRK13644 82 VFQNPETQFVGRTVEEDLAFGPENL----------CL------PPIEIRKRVDRALAEIGLEKYRHRS----------PK 135 (274)
T ss_pred EEEChhhhcccchHHHHHHhhHHHc----------CC------CHHHHHHHHHHHHHHCCCHHHhcCC----------cc
Confidence 999985 56789999997531100 00 0000123345566777775443322 34
Q ss_pred CCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1255 ILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1255 ~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
.||+|||||++||||++++|++|||||||++||+.+...+.+.+++ .|+|+|+++|+++.+..+|+++.|.+|+
T Consensus 136 ~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~ 212 (274)
T PRK13644 136 TLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGK 212 (274)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCE
Confidence 6999999999999999999999999999999999998887776542 4899999999999888999999997765
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=324.00 Aligned_cols=198 Identities=23% Similarity=0.268 Sum_probs=163.4
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCC--C---CccEEEeCCCCc--------c
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP--L---VSGHIAKPGVGS--------D 510 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~--~---~~G~i~~~~~~~--------~ 510 (1338)
.++++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+.+ | ++|+|.++|.+. .
T Consensus 5 ~l~~~~l~~~~~-~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14239 5 ILQVSDLSVYYN-KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD 83 (252)
T ss_pred eEEEEeeEEEEC-CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHh
Confidence 689999999996 4679999999999999999999999999999999999953 6 599999998541 2
Q ss_pred ccccEEEEecCCCCCCCCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCCchH----HhcCCCCccccCCCCCChhHHH
Q 000711 511 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQQ 585 (1338)
Q Consensus 511 ~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~----~~~~~~~~~~~~g~~LSgGqkQ 585 (1338)
+++.++|+||+|.+++.|++||+.++....... ....++++.++++.+++... .++. ..+|||||||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LS~G~~q 155 (252)
T PRK14239 84 LRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDS--------ALGLSGGQQQ 155 (252)
T ss_pred hhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcC--------cccCCHHHHH
Confidence 356799999999998899999998753211100 11123456778888887532 3332 3689999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 586 RlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
|++||||++++|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+ ..||++++|+++
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G 223 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDG 223 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999998875 368999999999876 579999999863
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=323.56 Aligned_cols=201 Identities=21% Similarity=0.253 Sum_probs=163.4
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCC---CCC--CccEEEeCCCCc--------c
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL---WPL--VSGHIAKPGVGS--------D 510 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~---~~~--~~G~i~~~~~~~--------~ 510 (1338)
.++++|+++.|++ +++++|+||++++||+++|+||||||||||+++|+|+ .+| ++|+|.++|.+. .
T Consensus 3 ~l~~~~~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14245 3 KIDARDVNFWYGD-FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE 81 (250)
T ss_pred EEEEEEEEEEECC-EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence 5899999999864 6799999999999999999999999999999999997 455 599999998641 2
Q ss_pred ccccEEEEecCCCCCCCCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHH
Q 000711 511 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1338)
Q Consensus 511 ~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlal 589 (1338)
.++.++|+||+|.++..|++||+.++....... ....++++.++++.+++.+.+.... .....+||||||||++|
T Consensus 82 ~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----~~~~~~LS~G~~qrv~l 157 (250)
T PRK14245 82 LRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKL----KESAFALSGGQQQRLCI 157 (250)
T ss_pred HhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhh----hCCcccCCHHHHHHHHH
Confidence 345799999999988889999998753211000 0112345778888898864322110 01136899999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhH-hhcceEEEccC
Q 000711 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 649 (1338)
Q Consensus 590 ARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~-~~~d~i~~l~~ 649 (1338)
||||+.+|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+ ..+|++++|++
T Consensus 158 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~ 220 (250)
T PRK14245 158 ARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYM 220 (250)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEEC
Confidence 9999999999999999999999999999998875 378999999999987 57999999986
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=325.36 Aligned_cols=202 Identities=20% Similarity=0.220 Sum_probs=163.8
Q ss_pred CcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCC--C---CccEEEeCCCCc--------
Q 000711 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP--L---VSGHIAKPGVGS-------- 509 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~--~---~~G~i~~~~~~~-------- 509 (1338)
..++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 11 ~~l~i~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 11 EVYQINGMNLWYG-QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred ceEEEeeEEEEEC-CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 4699999999986 4679999999999999999999999999999999999987 3 699999998641
Q ss_pred cccccEEEEecCCCCCCCCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHH
Q 000711 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1338)
Q Consensus 510 ~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRla 588 (1338)
.+++.++|+||++.++..|++||+.++....... .....+++.++++.+++.+.+.... .....+||||||||++
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l----~~~~~~LS~Gq~qrv~ 165 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRL----HTQALSLSGGQQQRLC 165 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhh----hCCcccCCHHHHHHHH
Confidence 2346799999999988889999998753211100 0111234667788888864321100 0113689999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHcc--CCeEEEEecChhhH-hhcceEEEccC
Q 000711 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALV-AFHDVVLSLDG 649 (1338)
Q Consensus 589 lARal~~~p~illLDEpts~LD~~~~~~i~~~l~~~--~~t~i~itH~~~~~-~~~d~i~~l~~ 649 (1338)
||||++++|+++||||||++||+.+...+.+.+++. ++|+|++||+++.+ ..+|++++|++
T Consensus 166 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 229 (259)
T PRK14274 166 IARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYM 229 (259)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999988653 78999999999986 47999999986
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=326.28 Aligned_cols=198 Identities=23% Similarity=0.305 Sum_probs=164.1
Q ss_pred CCcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCC-----CCccEEEeCCCCc-------
Q 000711 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS------- 509 (1338)
Q Consensus 442 ~~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~-----~~~G~i~~~~~~~------- 509 (1338)
...|+++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 37 ~~~l~i~~l~~~~~~-~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 37 ETVIEARDLNVFYGD-EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred CceEEEEEEEEEECC-EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 346999999999964 689999999999999999999999999999999999997 6899999998541
Q ss_pred -cccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCch----HHhcCCCCccccCCCCCChhHH
Q 000711 510 -DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 584 (1338)
Q Consensus 510 -~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~g~~LSgGqk 584 (1338)
.+++.++|+||++.++..|++||+.++...... ....++++.++++.+++.. ..++.+ .+||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~--------~~LSgGe~ 186 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGY-DGDIDERVEESLRRAALWDEVKDQLDSSG--------LDLSGGQQ 186 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCC-cHHHHHHHHHHHHHcCCCchhHHHHhCCc--------ccCCHHHH
Confidence 235679999999998888999999875321110 1112456788899998853 333333 68999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHcc--CCeEEEEecChhhHh-hcceEE-EccC
Q 000711 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVL-SLDG 649 (1338)
Q Consensus 585 QRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~~--~~t~i~itH~~~~~~-~~d~i~-~l~~ 649 (1338)
||++|||||+++|+++||||||++||+.+.+.+.+.+++. ++|+|++||+++.+. .+|+++ ++++
T Consensus 187 qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~ 255 (285)
T PRK14254 187 QRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTG 255 (285)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeC
Confidence 9999999999999999999999999999999999988753 579999999999875 699976 4564
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=319.06 Aligned_cols=202 Identities=21% Similarity=0.206 Sum_probs=161.5
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc-cCCcccEEEEc
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-AGSGCGIFYVP 1178 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~-~~lr~~i~~Vp 1178 (1338)
|+++||++.|++ +++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.++... ...+.+++|+|
T Consensus 1 i~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (220)
T cd03265 1 IEVENLVKKYGD-FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVF 79 (220)
T ss_pred CEEEEEEEEECC-EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEec
Confidence 578999998864 5799999999999999999999999999999999999999999999999887543 22345799999
Q ss_pred CCCCCCCC-CHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCCC
Q 000711 1179 QRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 1257 (1338)
Q Consensus 1179 QdP~LF~G-TIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LS 1257 (1338)
|+|.+|.+ |+++|+.++.. ..+.. ....++.+.++++.+++....++. ...||
T Consensus 80 q~~~~~~~~tv~~~l~~~~~----------~~~~~------~~~~~~~~~~~l~~~~l~~~~~~~----------~~~LS 133 (220)
T cd03265 80 QDLSVDDELTGWENLYIHAR----------LYGVP------GAERRERIDELLDFVGLLEAADRL----------VKTYS 133 (220)
T ss_pred CCccccccCcHHHHHHHHHH----------HcCCC------HHHHHHHHHHHHHHcCCHHHhhCC----------hhhCC
Confidence 99999875 99999964310 00000 000123456677777775433322 24699
Q ss_pred hhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCc-ccccceEEEecCC
Q 000711 1258 LGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDGE 1328 (1338)
Q Consensus 1258 gGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i-~~~d~~l~l~~g~ 1328 (1338)
||||||++||||++.+|+++||||||++||+++.+.+.+.+++ .++|+|+|+|+++.+ .++|+++.|.+|+
T Consensus 134 ~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~ 209 (220)
T cd03265 134 GGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGR 209 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCE
Confidence 9999999999999999999999999999999999887776543 389999999999855 5799999997654
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=323.69 Aligned_cols=198 Identities=21% Similarity=0.217 Sum_probs=164.4
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCC-----CccEEEeCCCCc--------c
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS--------D 510 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~-----~~G~i~~~~~~~--------~ 510 (1338)
.++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.+. .
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (251)
T PRK14270 4 KMESKNLNLWYG-EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVE 82 (251)
T ss_pred EEEEEEeEEEEC-CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHH
Confidence 689999999986 46799999999999999999999999999999999999875 799999998641 2
Q ss_pred ccccEEEEecCCCCCCCCHHHHhcCCCCCCcc-cCCCCHHHHHHHHHHcCCchH----HhcCCCCccccCCCCCChhHHH
Q 000711 511 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQQ 585 (1338)
Q Consensus 511 ~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~----~~~~~~~~~~~~g~~LSgGqkQ 585 (1338)
.++.++|+||++.++..|++||+.++...... ......+++.++++.+++.+. .++. ...|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LS~G~~q 154 (251)
T PRK14270 83 LRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKS--------ALKLSGGQQQ 154 (251)
T ss_pred HHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCC--------cccCCHHHHH
Confidence 35679999999999889999999875321110 001123456778888887532 3332 3689999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHcc--CCeEEEEecChhhHh-hcceEEEccCC
Q 000711 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 586 RlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~~--~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
|++||||++++|+++||||||++||+.+...+.+.+++. ++|+|++||+++.+. .+|++++|+++
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G 222 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMG 222 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECC
Confidence 999999999999999999999999999999999988752 689999999999865 69999999863
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=329.34 Aligned_cols=204 Identities=23% Similarity=0.324 Sum_probs=166.2
Q ss_pred ceEEeeeEEeCCC-ccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc--CCcccEE
Q 000711 1099 SISFSKLDIITPS-QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIF 1175 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~-~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~--~lr~~i~ 1175 (1338)
.|+++||++.|++ .+++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.... ..+++|+
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 4899999999975 467999999999999999999999999999999999999999999999999987652 2345799
Q ss_pred EEcCCC--CCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCccc
Q 000711 1176 YVPQRP--YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 1253 (1338)
Q Consensus 1176 ~VpQdP--~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g 1253 (1338)
|+||+| .++..|+++||.++... .+. .....+..+.++++.++|.....+. .
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~----------~~~------~~~~~~~~~~~~l~~~gL~~~~~~~----------~ 138 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLEN----------IGV------PREEMVERVDQALRQVGMEDFLNRE----------P 138 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhh----------CCC------CHHHHHHHHHHHHHHcCChhhhhCC----------c
Confidence 999999 46678999999764210 000 0000123355666777775554443 2
Q ss_pred CCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1254 DILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1254 ~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
..||||||||++|||||+++|++|||||||++||+++.+.+.+.+++ .|+|+|+|+|+++.+..+|+++.|.+|.
T Consensus 139 ~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~ 217 (279)
T PRK13635 139 HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGE 217 (279)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCE
Confidence 46999999999999999999999999999999999999988776643 3899999999998888899999997664
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=332.50 Aligned_cols=203 Identities=19% Similarity=0.215 Sum_probs=161.3
Q ss_pred eEEeeeEEeCCCc----cccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcc---------
Q 000711 1100 ISFSKLDIITPSQ----KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDE--------- 1166 (1338)
Q Consensus 1100 I~f~nV~f~yp~~----~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~--------- 1166 (1338)
|+++||++.|++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 7899999999753 369999999999999999999999999999999999999999999999876531
Q ss_pred -----------------ccCCcccEEEEcCCC--CCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHH
Q 000711 1167 -----------------EAGSGCGIFYVPQRP--YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLK 1227 (1338)
Q Consensus 1167 -----------------~~~lr~~i~~VpQdP--~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~ 1227 (1338)
....+++|+||||+| .+|..|++|||.++... .+. ..+..+..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~----------~~~------~~~~~~~~~~ 146 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVS----------MGV------SKEEAKKRAA 146 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHH----------cCC------CHHHHHHHHH
Confidence 112345799999987 68888999999764210 000 0000123345
Q ss_pred HHHhhCCch-hhhhhhcccCcccCcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCC
Q 000711 1228 TILEGVRLS-YLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGI 1303 (1338)
Q Consensus 1228 ~~l~~~~L~-~~i~~~~~Gldt~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~ 1303 (1338)
++++.++|. +..++. ..+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.+++ .|+
T Consensus 147 ~~l~~~gL~~~~~~~~----------~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~ 216 (305)
T PRK13651 147 KYIELVGLDESYLQRS----------PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGK 216 (305)
T ss_pred HHHHHcCCChhhhhCC----------hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCC
Confidence 667777774 232222 357999999999999999999999999999999999998887766543 489
Q ss_pred eEEEeccCCC-CcccccceEEEecCC
Q 000711 1304 TFVTSSQRPA-LIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1304 TvI~IAHRl~-~i~~~d~~l~l~~g~ 1328 (1338)
|||+|+|+++ ..+++|++++|.+|+
T Consensus 217 tiiivtHd~~~~~~~adrv~vl~~G~ 242 (305)
T PRK13651 217 TIILVTHDLDNVLEWTKRTIFFKDGK 242 (305)
T ss_pred EEEEEeeCHHHHHHhCCEEEEEECCE
Confidence 9999999997 558899999997764
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=340.46 Aligned_cols=207 Identities=19% Similarity=0.256 Sum_probs=168.3
Q ss_pred ceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc--CCcccEEE
Q 000711 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFY 1176 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~--~lr~~i~~ 1176 (1338)
.|+++||++.|++ +++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++.... .++++|++
T Consensus 3 ~L~~~nls~~y~~-~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 3 MIDVSDLSVEFGD-TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred eEEEeeEEEEECC-EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 4899999999964 67999999999999999999999999999999999999999999999999988752 34567999
Q ss_pred EcCCCCC-CCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCC
Q 000711 1177 VPQRPYT-CLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 1255 (1338)
Q Consensus 1177 VpQdP~L-F~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~ 1255 (1338)
|||+|.+ |+.|++||+.++..... + .........++.+.++++.+++.++.++. ..+
T Consensus 82 v~q~~~l~~~~tv~e~v~~~~~~~~---------~---~~~~~~~~~~~~v~~~le~vgl~~~~~~~----------~~~ 139 (402)
T PRK09536 82 VPQDTSLSFEFDVRQVVEMGRTPHR---------S---RFDTWTETDRAAVERAMERTGVAQFADRP----------VTS 139 (402)
T ss_pred EccCCCCCCCCCHHHHHHhccchhc---------c---cccCCCHHHHHHHHHHHHHcCCchhhcCC----------hhh
Confidence 9999987 67899999976421000 0 00000111234567778888886554332 347
Q ss_pred CChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCCCc-ccccceEEEecCC
Q 000711 1256 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLELRLIDGE 1328 (1338)
Q Consensus 1256 LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~~i-~~~d~~l~l~~g~ 1328 (1338)
||||||||++|||||+++|+||||||||++||..+...+.+++++ .++|+|+++|+++.+ +++|+++.|.+|+
T Consensus 140 LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~ 216 (402)
T PRK09536 140 LSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGR 216 (402)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999998877776543 489999999999877 7899999997665
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=324.69 Aligned_cols=207 Identities=24% Similarity=0.261 Sum_probs=162.8
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCC-----CceEEcCCCCCccc----cCC
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVV-----SGSLTKPSQHIDEE----AGS 1170 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~-----sG~I~idg~dI~~~----~~l 1170 (1338)
|+++||++.|++ .++++|+||+|++||.++|+|+||||||||+++|.|+++|+ +|+|.+||.++... ...
T Consensus 2 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 2 IEIENLNLFYGE-KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred EEEEEEEEEECC-eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 789999999975 46999999999999999999999999999999999999998 99999999988652 233
Q ss_pred cccEEEEcCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC
Q 000711 1171 GCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 1250 (1338)
Q Consensus 1171 r~~i~~VpQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~ 1250 (1338)
+.+++||||+|.+|..|+++|+.++... .+. . .....+..+.++++.+++...++. -++.
T Consensus 81 ~~~i~~v~q~~~~~~~tv~e~l~~~~~~----------~~~---~--~~~~~~~~~~~~l~~~~l~~~~~~---~~~~-- 140 (247)
T TIGR00972 81 RRRVGMVFQKPNPFPMSIYDNIAYGPRL----------HGI---K--DKKELDEIVEESLKKAALWDEVKD---RLHD-- 140 (247)
T ss_pred HhheEEEecCcccCCCCHHHHHHhHHHh----------cCC---C--CHHHHHHHHHHHHHHcCCCcchhh---HhhC--
Confidence 5579999999999999999999753110 000 0 000012335566677766421100 0111
Q ss_pred cccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCc-ccccceEEEecC
Q 000711 1251 NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALI-PFHSLELRLIDG 1327 (1338)
Q Consensus 1251 ~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i-~~~d~~l~l~~g 1327 (1338)
....||||||||++||||++++|+++||||||++||+++.+.+.+++++ .++|+|+|+|+++.+ +++|+++.|.+|
T Consensus 141 -~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G 219 (247)
T TIGR00972 141 -SALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDG 219 (247)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECC
Confidence 2357999999999999999999999999999999999999888777653 358999999999854 689999999776
Q ss_pred C
Q 000711 1328 E 1328 (1338)
Q Consensus 1328 ~ 1328 (1338)
+
T Consensus 220 ~ 220 (247)
T TIGR00972 220 E 220 (247)
T ss_pred E
Confidence 4
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=325.61 Aligned_cols=210 Identities=20% Similarity=0.198 Sum_probs=164.0
Q ss_pred CCceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCC-----CCCceEEcCCCCCccc----
Q 000711 1097 QDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP-----VVSGSLTKPSQHIDEE---- 1167 (1338)
Q Consensus 1097 ~g~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~-----~~sG~I~idg~dI~~~---- 1167 (1338)
.+.|+++||++.|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++ |++|+|.+||.++...
T Consensus 11 ~~~l~~~~l~~~~~~-~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 11 PSKIQVRNLNFYYGK-FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred CceEEEEEEEEEeCC-eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 578999999999975 579999999999999999999999999999999999986 4899999999988532
Q ss_pred cCCcccEEEEcCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCc
Q 000711 1168 AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWD 1247 (1338)
Q Consensus 1168 ~~lr~~i~~VpQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gld 1247 (1338)
...|.+++|+||+|.+|..|+++|+.++..... +. .....++.+.++++.+++...+... ++
T Consensus 90 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~---------~~------~~~~~~~~~~~~l~~~~l~~~~~~~---~~ 151 (260)
T PRK10744 90 ALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFE---------KL------SRAEMDERVEWALTKAALWNEVKDK---LH 151 (260)
T ss_pred HHHhcceEEEecCCccCcCcHHHHHhhhHhhcC---------CC------CHHHHHHHHHHHHHHcCCChhhHHH---Hh
Confidence 234567999999999999999999975321000 00 0000123345566666653211110 11
Q ss_pred ccCcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCc-ccccceEEE
Q 000711 1248 ANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALI-PFHSLELRL 1324 (1338)
Q Consensus 1248 t~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i-~~~d~~l~l 1324 (1338)
. ...+||||||||++||||++++|++|||||||++||.++.+.+.+.+++ .+.|+|+|+|+++.+ +++|+++.|
T Consensus 152 ~---~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l 228 (260)
T PRK10744 152 Q---SGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFM 228 (260)
T ss_pred c---CCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEE
Confidence 1 2357999999999999999999999999999999999999888776653 378999999999865 689999999
Q ss_pred ecCC
Q 000711 1325 IDGE 1328 (1338)
Q Consensus 1325 ~~g~ 1328 (1338)
.+|+
T Consensus 229 ~~G~ 232 (260)
T PRK10744 229 YLGE 232 (260)
T ss_pred ECCE
Confidence 7664
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=334.10 Aligned_cols=198 Identities=22% Similarity=0.283 Sum_probs=161.5
Q ss_pred cEEEEeEEEEcCCC---CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCC----CCccEEEeCCCCc------c
Q 000711 444 YIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP----LVSGHIAKPGVGS------D 510 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~---~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~----~~~G~i~~~~~~~------~ 510 (1338)
.++++||++.|++. ..+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+. +
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 48999999998653 469999999999999999999999999999999999998 4899999999651 1
Q ss_pred ----ccccEEEEecCCC--C-CCCCHHHHhcCCCCCC-cccCCCCHHHHHHHHHHcCCch---HHhcCCCCccccCCCCC
Q 000711 511 ----LNKEIFYVPQRPY--T-AVGTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLEY---LLDRYPPEKEINWGDEL 579 (1338)
Q Consensus 511 ----~~~~i~~v~Q~~~--l-~~~tl~eni~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~~~~g~~L 579 (1338)
.++.|+||||+|. + +..|+.+++..+.... ........+++.++++.++|.+ ..++.| .+|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p--------~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYP--------HQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCc--------hhC
Confidence 1246999999984 3 3357777665432110 0001123456889999999964 455555 689
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhH-hhcceEEEccC
Q 000711 580 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1338)
Q Consensus 580 SgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~-~~~d~i~~l~~ 649 (1338)
|||||||++|||||+.+|+++|+||||++||+.++..+++.+++ .|.|+|+|||+++.+ ..+|+|++|.+
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~ 229 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYA 229 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999887754 489999999999988 57999999986
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=302.94 Aligned_cols=161 Identities=30% Similarity=0.465 Sum_probs=144.9
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC-----ccccccEEEEe
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP 519 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~-----~~~~~~i~~v~ 519 (1338)
++++|+++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+|
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (173)
T cd03230 1 IEVRNLSKRYGK-KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLP 79 (173)
T ss_pred CEEEEEEEEECC-eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEe
Confidence 468999999864 579999999999999999999999999999999999999999999999864 13356799999
Q ss_pred cCCCCCCC-CHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCC
Q 000711 520 QRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1338)
Q Consensus 520 Q~~~l~~~-tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ 598 (1338)
|+|.++.+ |++||+. ||||||||++||||++.+|+
T Consensus 80 q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~qrv~laral~~~p~ 115 (173)
T cd03230 80 EEPSLYENLTVRENLK--------------------------------------------LSGGMKQRLALAQALLHDPE 115 (173)
T ss_pred cCCccccCCcHHHHhh--------------------------------------------cCHHHHHHHHHHHHHHcCCC
Confidence 99988775 8888863 99999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHh-hcceEEEccCC
Q 000711 599 FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 599 illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
+++|||||++||+.+.+.+.+.+++ .|.|+|++||+++.+. .+|++++++++
T Consensus 116 illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g 171 (173)
T cd03230 116 LLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNG 171 (173)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999998764 3789999999999876 79999999763
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=339.83 Aligned_cols=204 Identities=19% Similarity=0.252 Sum_probs=167.6
Q ss_pred CceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccccCCcccEEEE
Q 000711 1098 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYV 1177 (1338)
Q Consensus 1098 g~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~~lr~~i~~V 1177 (1338)
..|+++||+++|++ .++|+|+||+|++||.++|+||||||||||+++|.|+.+|++|+|.+||.++......+++++||
T Consensus 18 ~~l~l~~v~~~~~~-~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 96 (377)
T PRK11607 18 PLLEIRNLTKSFDG-QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMM 96 (377)
T ss_pred ceEEEEeEEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 35999999999864 57999999999999999999999999999999999999999999999999987764445579999
Q ss_pred cCCCCCCCC-CHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCC
Q 000711 1178 PQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDIL 1256 (1338)
Q Consensus 1178 pQdP~LF~G-TIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~L 1256 (1338)
+|+|.||.. |++|||.|+.... +. ........+.++++.++|.++.++. ..+|
T Consensus 97 fQ~~~lfp~ltv~eNi~~~l~~~----------~~------~~~~~~~~v~~~l~~l~L~~~~~~~----------~~~L 150 (377)
T PRK11607 97 FQSYALFPHMTVEQNIAFGLKQD----------KL------PKAEIASRVNEMLGLVHMQEFAKRK----------PHQL 150 (377)
T ss_pred eCCCccCCCCCHHHHHHHHHHHc----------CC------CHHHHHHHHHHHHHHcCCchhhcCC----------hhhC
Confidence 999999975 9999998763210 00 0000123456677777776554443 2469
Q ss_pred ChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHH----HHhcCCeEEEeccCCC-CcccccceEEEecCC
Q 000711 1257 SLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRL----AKDMGITFVTSSQRPA-LIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1257 SgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~----~~~~~~TvI~IAHRl~-~i~~~d~~l~l~~g~ 1328 (1338)
|||||||+||||||+++|++|+||||||+||..+.+.+.+. .++.|.|+|.|+|+++ ....+|++++|.+|+
T Consensus 151 SgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~ 227 (377)
T PRK11607 151 SGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGK 227 (377)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCE
Confidence 99999999999999999999999999999999998776543 3346899999999997 468899999997664
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=336.09 Aligned_cols=188 Identities=23% Similarity=0.326 Sum_probs=163.5
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc----------ccccc
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----------DLNKE 514 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~----------~~~~~ 514 (1338)
|++ |+++.|.+ +. + |+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. ..+++
T Consensus 2 l~~-~l~k~~~~-~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 77 (352)
T PRK11144 2 LEL-NFKQQLGD-LC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRR 77 (352)
T ss_pred eEE-EEEEEeCC-EE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCC
Confidence 667 89998853 33 3 89999999999999999999999999999999999999999998541 12467
Q ss_pred EEEEecCCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHH
Q 000711 515 IFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1338)
Q Consensus 515 i~~v~Q~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal 593 (1338)
++|+||++.+++ .|++||+.|+... ...+++.++++.+++.++.++.| .+||||||||++|||||
T Consensus 78 i~~v~q~~~l~~~~tv~enl~~~~~~------~~~~~~~~~l~~~gl~~~~~~~~--------~~LSgGq~qRvalaraL 143 (352)
T PRK11144 78 IGYVFQDARLFPHYKVRGNLRYGMAK------SMVAQFDKIVALLGIEPLLDRYP--------GSLSGGEKQRVAIGRAL 143 (352)
T ss_pred EEEEcCCcccCCCCcHHHHHHhhhhh------hhHHHHHHHHHHcCCchhhhCCc--------ccCCHHHHHHHHHHHHH
Confidence 999999998876 5999999987431 23467889999999998888876 68999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 594 ~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
+++|+++||||||++||+.+++.+.+.+++ .|+|+|+|||+++.+ ..+|++++|+++
T Consensus 144 ~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G 205 (352)
T PRK11144 144 LTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQG 205 (352)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999887764 389999999999876 579999999863
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=337.13 Aligned_cols=186 Identities=27% Similarity=0.330 Sum_probs=159.0
Q ss_pred CCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCC----C-c-----c---c-cccEEEEecCC
Q 000711 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV----G-S-----D---L-NKEIFYVPQRP 522 (1338)
Q Consensus 457 ~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~----~-~-----~---~-~~~i~~v~Q~~ 522 (1338)
...+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. + . . . +++++||||++
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~ 115 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKF 115 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCC
Confidence 457899999999999999999999999999999999999999999999984 2 0 1 1 25799999999
Q ss_pred CCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000711 523 YTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601 (1338)
Q Consensus 523 ~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ill 601 (1338)
.+++ .|++||+.|+............+++.++++.++|.++.++.| .+||||||||++|||||+++|+++|
T Consensus 116 ~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~--------~~LSgGq~QRV~LARALa~~P~ILL 187 (382)
T TIGR03415 116 ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP--------GELSGGMQQRVGLARAFAMDADILL 187 (382)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh--------hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9887 699999998743211111112356788999999998888876 6899999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 602 LDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 602 LDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
||||||+||+.+...+++.+.+ .++|+|+|||+++.+ +.+|+|++|+++
T Consensus 188 lDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G 241 (382)
T TIGR03415 188 MDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGG 241 (382)
T ss_pred EECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999988753 389999999999986 679999999873
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=324.02 Aligned_cols=197 Identities=24% Similarity=0.293 Sum_probs=162.4
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCC-----CccEEEeCCCCc--------c
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS--------D 510 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~-----~~G~i~~~~~~~--------~ 510 (1338)
.++++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+. .
T Consensus 4 ~l~i~~v~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~ 82 (258)
T PRK14241 4 RIDVKDLNIYYGS-FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82 (258)
T ss_pred cEEEeeEEEEECC-EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHH
Confidence 5899999999964 6799999999999999999999999999999999999974 799999998541 2
Q ss_pred ccccEEEEecCCCCCC-CCHHHHhcCCCCCCcc-cCCCCHHHHHHHHHHcCCch----HHhcCCCCccccCCCCCChhHH
Q 000711 511 LNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 584 (1338)
Q Consensus 511 ~~~~i~~v~Q~~~l~~-~tl~eni~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~g~~LSgGqk 584 (1338)
+++.++|++|++.++. .|++||+.++...... .....++++.++++.+++.+ ..++. ..+||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LS~G~~ 154 (258)
T PRK14241 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKP--------GGGLSGGQQ 154 (258)
T ss_pred HhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCC--------cccCCHHHH
Confidence 3467999999998876 5999999865321110 01112345677888888853 33332 368999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhH-hhcceEEEccC
Q 000711 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 649 (1338)
Q Consensus 585 QRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~-~~~d~i~~l~~ 649 (1338)
||++||||++.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+ +.+|+++++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~ 222 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNL 222 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEec
Confidence 999999999999999999999999999999999998865 368999999999986 57999999973
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=323.34 Aligned_cols=197 Identities=21% Similarity=0.226 Sum_probs=163.2
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCC-----CCccEEEeCCCCc--------cc
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS--------DL 511 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~-----~~~G~i~~~~~~~--------~~ 511 (1338)
-+++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+. .+
T Consensus 6 ~~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 84 (251)
T PRK14244 6 ASVKNLNLWYG-SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLL 84 (251)
T ss_pred EEeeeEEEEEC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHH
Confidence 46899999985 4689999999999999999999999999999999999986 4799999998641 23
Q ss_pred cccEEEEecCCCCCCCCHHHHhcCCCCCCcc--cCCCCHHHHHHHHHHcCCchH----HhcCCCCccccCCCCCChhHHH
Q 000711 512 NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE--VEPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQQ 585 (1338)
Q Consensus 512 ~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~----~~~~~~~~~~~~g~~LSgGqkQ 585 (1338)
++.++|+||++.++.+|++||+.++...... .....++++.++++.+++.+. .++. ..+|||||||
T Consensus 85 ~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LS~Gq~q 156 (251)
T PRK14244 85 RAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDS--------AFELSGGQQQ 156 (251)
T ss_pred hhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcC--------hhhCCHHHHH
Confidence 5679999999998888999999875211100 001123456788999998653 2232 3689999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhHh-hcceEEEccCC
Q 000711 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 586 RlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
|++||||++.+|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+. .+|++++|+++
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G 224 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSG 224 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECC
Confidence 99999999999999999999999999999999988865 3799999999999875 69999999863
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=316.85 Aligned_cols=196 Identities=23% Similarity=0.273 Sum_probs=160.2
Q ss_pred EEEEeEEEEcCC------CCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCC----Cc-----
Q 000711 445 IEFSGVKVVTPT------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV----GS----- 509 (1338)
Q Consensus 445 i~~~~v~~~~~~------~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~----~~----- 509 (1338)
++++|+++.|++ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 789999999863 247999999999999999999999999999999999999999999999842 20
Q ss_pred ----cc-cccEEEEecCCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHH-hcCCCCccccCCCCCChh
Q 000711 510 ----DL-NKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLL-DRYPPEKEINWGDELSLG 582 (1338)
Q Consensus 510 ----~~-~~~i~~v~Q~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~~~g~~LSgG 582 (1338)
+. ++.++|+||+|.++. .|++||+.++............+++.++++.+++.+.. ++. ..+||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~~LS~G 153 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLP--------PATFSGG 153 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCC--------cccCCHH
Confidence 01 246999999998765 59999997642211110111234667888999987643 433 3689999
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHh-hcceEEEcc
Q 000711 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLD 648 (1338)
Q Consensus 583 qkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~-~~d~i~~l~ 648 (1338)
||||++|||||+.+|++++|||||++||+.+.+.+.+.+++ .|+|+|++||+++.+. .||+++.+.
T Consensus 154 ~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 154 EQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEecC
Confidence 99999999999999999999999999999999999998764 4899999999999875 799998764
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=322.63 Aligned_cols=212 Identities=20% Similarity=0.256 Sum_probs=165.4
Q ss_pred ceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc---CCcccEE
Q 000711 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA---GSGCGIF 1175 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~---~lr~~i~ 1175 (1338)
-|+++|+++.|++ +++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++.... ..+.+++
T Consensus 2 ~i~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 2 ILYLEGLSVSFDG-FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred eEEEEeeEEEcCC-eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 3789999999975 57999999999999999999999999999999999999999999999999887542 2344699
Q ss_pred EEcCCCCCCCC-CHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccC
Q 000711 1176 YVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWED 1254 (1338)
Q Consensus 1176 ~VpQdP~LF~G-TIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~ 1254 (1338)
|+||+|.+|.+ |++||+.++......... ...+. ..+..+..+.++++.+++....+. ...
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~--~~~~~------~~~~~~~~~~~~l~~~~l~~~~~~----------~~~ 142 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFA--SLFFR------LSAEEKDRIEEVLETIGLADEADR----------LAG 142 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhccccccc--ccccc------cHHHHHHHHHHHHHHcCCchhhcC----------Chh
Confidence 99999999987 999999764211000000 00000 000113345666776666433221 135
Q ss_pred CCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCc-ccccceEEEecCCC
Q 000711 1255 ILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALI-PFHSLELRLIDGEG 1329 (1338)
Q Consensus 1255 ~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i-~~~d~~l~l~~g~g 1329 (1338)
.||||||||++||||++++|++|+||||||+||.++.+.+.+.+++ .++|+|+|+|+++.+ +++|+++.|.+|+-
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~ 220 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSV 220 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeE
Confidence 7999999999999999999999999999999999999988877654 378999999999876 57999999977653
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=302.80 Aligned_cols=188 Identities=23% Similarity=0.260 Sum_probs=140.3
Q ss_pred CceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccccCCcccEEEE
Q 000711 1098 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYV 1177 (1338)
Q Consensus 1098 g~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~~lr~~i~~V 1177 (1338)
..+-+.||+|.||+..|++++++|-|.--.+|+||||+|.||||++.+|.|-.+|..|+...+ .|.+|++.
T Consensus 585 PvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn---------hrL~iG~F 655 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN---------HRLRIGWF 655 (807)
T ss_pred CeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc---------ceeeeech
Confidence 357899999999999999999999999999999999999999999999999999999987633 34578887
Q ss_pred cCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCc--ccCC
Q 000711 1178 PQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLN--WEDI 1255 (1338)
Q Consensus 1178 pQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~--~g~~ 1255 (1338)
-|.. .|.|.......+- -+... +.........|...|| .+... .-..
T Consensus 656 dQh~-------~E~L~~Eetp~Ey---Lqr~F----------Nlpyq~ARK~LG~fGL-----------~sHAHTikikd 704 (807)
T KOG0066|consen 656 DQHA-------NEALNGEETPVEY---LQRKF----------NLPYQEARKQLGTFGL-----------ASHAHTIKIKD 704 (807)
T ss_pred hhhh-------HHhhccccCHHHH---HHHhc----------CCChHHHHHHhhhhhh-----------hhccceEeeee
Confidence 7764 1222110000000 01111 1112222333333333 32221 1245
Q ss_pred CChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHhcCCeEEEeccCCCCcccccceEEEe
Q 000711 1256 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLI 1325 (1338)
Q Consensus 1256 LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~~~~TvI~IAHRl~~i~~~d~~l~l~ 1325 (1338)
||||||-|+++|-.-|+.|+||||||||.+||.++..++-+.+++..-.||+|+|.-.+|.-.|-.|...
T Consensus 705 LSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsHDeRLi~eT~C~LwVv 774 (807)
T KOG0066|consen 705 LSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHDERLIVETDCNLWVV 774 (807)
T ss_pred cCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEecccceeeecCceEEEE
Confidence 9999999999999999999999999999999999999999999888889999999998887766666553
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=319.41 Aligned_cols=204 Identities=25% Similarity=0.334 Sum_probs=164.9
Q ss_pred eEEeeeEEeCCCc---cccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc-----CCc
Q 000711 1100 ISFSKLDIITPSQ---KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSG 1171 (1338)
Q Consensus 1100 I~f~nV~f~yp~~---~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~-----~lr 1171 (1338)
++|+||++.|++. +++|+|+||++++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.... ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 7899999998642 67999999999999999999999999999999999999999999999999887542 234
Q ss_pred ccEEEEcCCCCCCC-CCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC
Q 000711 1172 CGIFYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 1250 (1338)
Q Consensus 1172 ~~i~~VpQdP~LF~-GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~ 1250 (1338)
.+++|+||+|.+|. .|+.+|+.++...... . .....+..+.++++.+++.+..++.
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~---------~------~~~~~~~~~~~~l~~~~l~~~~~~~-------- 138 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPN---------L------SYQEARERARAMLEAVGLGDHLDYY-------- 138 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccC---------C------CHHHHHHHHHHHHHHcCChhhhhcC--------
Confidence 57999999999997 7999999753110000 0 0000123355667777775444332
Q ss_pred cccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCcccccceEEEec
Q 000711 1251 NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALIPFHSLELRLID 1326 (1338)
Q Consensus 1251 ~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i~~~d~~l~l~~ 1326 (1338)
...||+|||||++||||++++|++|||||||++||.++.+.+.+.+++ .++|+|+|+|+++.+.++|++++|.+
T Consensus 139 --~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~ 216 (220)
T TIGR02982 139 --PHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMED 216 (220)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEEC
Confidence 246999999999999999999999999999999999998887766532 48999999999998899999999976
Q ss_pred CC
Q 000711 1327 GE 1328 (1338)
Q Consensus 1327 g~ 1328 (1338)
|+
T Consensus 217 g~ 218 (220)
T TIGR02982 217 GK 218 (220)
T ss_pred CE
Confidence 53
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=311.13 Aligned_cols=187 Identities=26% Similarity=0.359 Sum_probs=157.6
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC-----ccccccEEEEe
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP 519 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~-----~~~~~~i~~v~ 519 (1338)
++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (198)
T TIGR01189 1 LAARNLACSRG-ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLG 79 (198)
T ss_pred CEEEEEEEEEC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEec
Confidence 46899999885 4689999999999999999999999999999999999999999999999864 12346799999
Q ss_pred cCCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCC
Q 000711 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1338)
Q Consensus 520 Q~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ 598 (1338)
|++.++. .|++||+.+...... ..+.++.++++.+++++..++.+ .+||||||||++||||++++|+
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al~~~p~ 147 (198)
T TIGR01189 80 HLPGLKPELSALENLHFWAAIHG----GAQRTIEDALAAVGLTGFEDLPA--------AQLSAGQQRRLALARLWLSRAP 147 (198)
T ss_pred cCcccccCCcHHHHHHHHHHHcC----CcHHHHHHHHHHcCCHHHhcCCh--------hhcCHHHHHHHHHHHHHhcCCC
Confidence 9998765 699999976532111 12346788999999988877655 6899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHhhcceEE
Q 000711 599 FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVL 645 (1338)
Q Consensus 599 illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~~~d~i~ 645 (1338)
+++|||||++||+.+.+.+.+.+++ .|.|+|++||+...+. +++++
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~~~ 196 (198)
T TIGR01189 148 LWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV-EAREL 196 (198)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc-ceEEe
Confidence 9999999999999999999988864 4889999999985433 34444
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=321.38 Aligned_cols=202 Identities=22% Similarity=0.225 Sum_probs=164.2
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCC-----ccEEEeCCCCc--------c
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV-----SGHIAKPGVGS--------D 510 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~-----~G~i~~~~~~~--------~ 510 (1338)
.++++|+++.|+ ++++++|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.+. .
T Consensus 4 ~l~~~~l~~~~~-~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 82 (251)
T PRK14249 4 KIKIRGVNFFYH-KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVN 82 (251)
T ss_pred eEEEEEEEEEEC-CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHH
Confidence 589999999986 467999999999999999999999999999999999999997 69999998541 2
Q ss_pred ccccEEEEecCCCCCCCCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHH
Q 000711 511 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1338)
Q Consensus 511 ~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlal 589 (1338)
+++.++|+||+|.++..|++||+.++....... ....++.+.++++.+++.+.+.... .....+||||||||++|
T Consensus 83 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~----~~~~~~LS~Gq~qrv~l 158 (251)
T PRK14249 83 LRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNL----HKSGLALSGGQQQRLCI 158 (251)
T ss_pred hhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHh----hCCcccCCHHHHHHHHH
Confidence 356799999999988889999998763211100 0112345666777788754322110 01236899999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhHh-hcceEEEccCC
Q 000711 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 590 ARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
||||+.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+. .||++++|+++
T Consensus 159 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G 222 (251)
T PRK14249 159 ARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTG 222 (251)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCC
Confidence 9999999999999999999999999999888765 3789999999999876 57999999863
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=328.12 Aligned_cols=205 Identities=23% Similarity=0.275 Sum_probs=165.8
Q ss_pred ceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEEE
Q 000711 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFY 1176 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~~ 1176 (1338)
-++++||+++|++..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++... ...+.+++|
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 378999999997666799999999999999999999999999999999999999999999999988653 233457999
Q ss_pred EcCCC--CCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccC
Q 000711 1177 VPQRP--YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWED 1254 (1338)
Q Consensus 1177 VpQdP--~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~ 1254 (1338)
|||+| .+|..|+++|+.++... .+. .++..+..+.++++.+++.....+. ..
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~----------~~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~ 136 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPIN----------LGL------DEETVAHRVSSALHMLGLEELRDRV----------PH 136 (277)
T ss_pred EecCcccccccccHHHHHHhHHHH----------cCC------CHHHHHHHHHHHHHHCCChhHhcCC----------cc
Confidence 99998 47888999999753210 000 0000123355677777775544433 34
Q ss_pred CCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCc-ccccceEEEecCCC
Q 000711 1255 ILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDGEG 1329 (1338)
Q Consensus 1255 ~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i-~~~d~~l~l~~g~g 1329 (1338)
.||||||||++|||||+++|++|||||||++||+.+.+.+.+.+++ .++|+|+++|+++.+ +++|+++.|.+|.-
T Consensus 137 ~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i 216 (277)
T PRK13652 137 HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRI 216 (277)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeE
Confidence 6999999999999999999999999999999999999887766542 389999999999876 78999999977653
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=324.80 Aligned_cols=209 Identities=22% Similarity=0.243 Sum_probs=164.0
Q ss_pred CceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCC-----CCceEEcCCCCCccc----c
Q 000711 1098 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPV-----VSGSLTKPSQHIDEE----A 1168 (1338)
Q Consensus 1098 g~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~-----~sG~I~idg~dI~~~----~ 1168 (1338)
..|+++||+++|++ +++|+|+||+|++||.++|+|+||||||||+++|.|+++| .+|+|.+||.++... .
T Consensus 6 ~~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 6 AIIETENLNLFYTD-FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred ceEEEeeeEEEeCC-ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 47999999999964 5799999999999999999999999999999999999987 489999999988532 2
Q ss_pred CCcccEEEEcCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcc
Q 000711 1169 GSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDA 1248 (1338)
Q Consensus 1169 ~lr~~i~~VpQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt 1248 (1338)
..+.+++||||+|.+|..|++|||.++... .+.. .....++.+.++++.+++...+ ++.+++
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~----------~~~~-----~~~~~~~~~~~~l~~~~l~~~l---~~~~~~ 146 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKI----------HGTK-----DKKKLDEIVEQSLKKSALWNEV---KDKLNT 146 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHh----------cCCC-----CHHHHHHHHHHHHHHhCCchhh---HHHHhC
Confidence 335679999999999999999999754210 0000 0000123345556666553211 122333
Q ss_pred cCcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCc-ccccceEEEe
Q 000711 1249 NLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALI-PFHSLELRLI 1325 (1338)
Q Consensus 1249 ~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i-~~~d~~l~l~ 1325 (1338)
. ..+||||||||++||||++++|++|||||||++||..+.+.+.+++++ .++|+|+|+|+++.+ +++|+++.|.
T Consensus 147 ~---~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~ 223 (254)
T PRK14273 147 N---ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFL 223 (254)
T ss_pred C---cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 3 357999999999999999999999999999999999999888776644 378999999999865 6799999997
Q ss_pred cCC
Q 000711 1326 DGE 1328 (1338)
Q Consensus 1326 ~g~ 1328 (1338)
+|+
T Consensus 224 ~G~ 226 (254)
T PRK14273 224 NGC 226 (254)
T ss_pred CCE
Confidence 664
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=325.60 Aligned_cols=199 Identities=21% Similarity=0.215 Sum_probs=162.4
Q ss_pred CcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCC-----CCccEEEeCCCCc--------
Q 000711 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS-------- 509 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~-----~~~G~i~~~~~~~-------- 509 (1338)
..++++|+++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 23 ~~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 101 (271)
T PRK14238 23 VVFDTQNLNLWYGE-DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVE 101 (271)
T ss_pred eEEEEeeeEEEECC-cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHH
Confidence 46999999999864 579999999999999999999999999999999999987 6999999998541
Q ss_pred cccccEEEEecCCCCCCCCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCCc----hHHhcCCCCccccCCCCCChhHH
Q 000711 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLE----YLLDRYPPEKEINWGDELSLGEQ 584 (1338)
Q Consensus 510 ~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~~~~~~g~~LSgGqk 584 (1338)
.+++.++|+||+|.++..|++||+.++....... ....++.+.++++.+++. +..++. ...||||||
T Consensus 102 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~--------~~~LSgGe~ 173 (271)
T PRK14238 102 ELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDN--------AYGLSGGQQ 173 (271)
T ss_pred HHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcC--------cccCCHHHH
Confidence 2356799999999998889999998753211100 001123455667666543 223332 368999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhHh-hcceEEEccCC
Q 000711 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 585 QRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
||++|||||+++|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+. .||++++|+++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G 242 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNG 242 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999998865 3789999999999875 79999999863
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=324.74 Aligned_cols=208 Identities=19% Similarity=0.208 Sum_probs=165.3
Q ss_pred CCceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc---------
Q 000711 1097 QDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--------- 1167 (1338)
Q Consensus 1097 ~g~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--------- 1167 (1338)
.+.|+++||++.|++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.++|.++...
T Consensus 3 ~~~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 3 ENKLNVIDLHKRYGE-HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred CccEEEeeeEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence 467999999999974 5799999999999999999999999999999999999999999999999887531
Q ss_pred ------cCCcccEEEEcCCCCCCCC-CHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhh-
Q 000711 1168 ------AGSGCGIFYVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLL- 1239 (1338)
Q Consensus 1168 ------~~lr~~i~~VpQdP~LF~G-TIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i- 1239 (1338)
...+.+++||||+|.+|.+ |++||+.++... ..+. .....+..+.++++.+++....
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~---------~~~~------~~~~~~~~~~~~l~~~gl~~~~~ 146 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ---------VLGL------SKQEARERAVKYLAKVGIDERAQ 146 (257)
T ss_pred ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHH---------hCCC------CHHHHHHHHHHHHHHcCCChhhh
Confidence 1234579999999999975 999999752100 0000 0000123355666766664332
Q ss_pred hhhcccCcccCcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCCCcc
Q 000711 1240 EREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALIP 1316 (1338)
Q Consensus 1240 ~~~~~Gldt~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~~i~ 1316 (1338)
++ ....||||||||++|||||+++|+++||||||++||+++.+.+.+.+++ .|+|+|+|+|+++.+.
T Consensus 147 ~~----------~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~ 216 (257)
T PRK10619 147 GK----------YPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFAR 216 (257)
T ss_pred hC----------CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 11 2357999999999999999999999999999999999999888776543 4899999999998766
Q ss_pred -cccceEEEecCCCC
Q 000711 1317 -FHSLELRLIDGEGN 1330 (1338)
Q Consensus 1317 -~~d~~l~l~~g~g~ 1330 (1338)
++|+++.|.+|+--
T Consensus 217 ~~~d~i~~l~~G~i~ 231 (257)
T PRK10619 217 HVSSHVIFLHQGKIE 231 (257)
T ss_pred HhcCEEEEEECCEEE
Confidence 68999999877643
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=322.31 Aligned_cols=198 Identities=21% Similarity=0.293 Sum_probs=162.2
Q ss_pred CcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC-----c-c------
Q 000711 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----S-D------ 510 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~-----~-~------ 510 (1338)
..++++|+++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . .
T Consensus 5 ~~l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 5 PLLSVRGLTKLYGP-RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred ceEEEeeeEEEcCC-ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 36899999999964 689999999999999999999999999999999999999999999999864 1 1
Q ss_pred ---ccccEEEEecCCC--C-CCCCHHHHhcCCCCCCc-ccCCCCHHHHHHHHHHcCCch-HHhcCCCCccccCCCCCChh
Q 000711 511 ---LNKEIFYVPQRPY--T-AVGTLRDQLIYPLTSDQ-EVEPLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGDELSLG 582 (1338)
Q Consensus 511 ---~~~~i~~v~Q~~~--l-~~~tl~eni~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~g~~LSgG 582 (1338)
.++.++|+||++. + +..|+.+|+.++..... ........++.++++.+++.+ ..++.+ .+||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LS~G 155 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLP--------TTFSGG 155 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCC--------ccCCHH
Confidence 1346999999983 3 33588888865321000 000112345677888888863 555544 689999
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 583 qkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
||||++|||||+++|+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+. .+|+++++++
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~ 227 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQ 227 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 99999999999999999999999999999999999888753 3889999999999986 7999999986
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=318.48 Aligned_cols=202 Identities=22% Similarity=0.295 Sum_probs=163.1
Q ss_pred ceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc--CCcccEEE
Q 000711 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFY 1176 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~--~lr~~i~~ 1176 (1338)
.|+++||++.|++ .++++|+||+|++||.++|+||||||||||+++|.|+++|++|+|.++|.++.... ..+.+++|
T Consensus 7 ~i~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 85 (225)
T PRK10247 7 LLQLQNVGYLAGD-AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSY 85 (225)
T ss_pred eEEEeccEEeeCC-ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEE
Confidence 5999999999864 57999999999999999999999999999999999999999999999999887542 23457999
Q ss_pred EcCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchh-hhhhhcccCcccCcccCC
Q 000711 1177 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSY-LLEREEVGWDANLNWEDI 1255 (1338)
Q Consensus 1177 VpQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~-~i~~~~~Gldt~~~~g~~ 1255 (1338)
+||+|.+|+.|++||+.++... .+. ...+..+.++++.+++.. ...+ ...+
T Consensus 86 ~~q~~~l~~~tv~enl~~~~~~----------~~~--------~~~~~~~~~~l~~~~l~~~~~~~----------~~~~ 137 (225)
T PRK10247 86 CAQTPTLFGDTVYDNLIFPWQI----------RNQ--------QPDPAIFLDDLERFALPDTILTK----------NIAE 137 (225)
T ss_pred EecccccccccHHHHHHhHHhh----------cCC--------ChHHHHHHHHHHHcCCChHHhcC----------Cccc
Confidence 9999999999999999753100 000 001223445666666631 2111 2357
Q ss_pred CChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCcccccceEEEecCCC
Q 000711 1256 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALIPFHSLELRLIDGEG 1329 (1338)
Q Consensus 1256 LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i~~~d~~l~l~~g~g 1329 (1338)
||+|||||++||||++++|+++||||||++||..+.+.+.+.+++ .++|+|+|+|+++.++.+|+++.|.+..|
T Consensus 138 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~ 215 (225)
T PRK10247 138 LSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAG 215 (225)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccc
Confidence 999999999999999999999999999999999998887765543 48999999999998889999999954333
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=323.83 Aligned_cols=204 Identities=21% Similarity=0.244 Sum_probs=161.7
Q ss_pred ceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc----------c
Q 000711 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE----------A 1168 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~----------~ 1168 (1338)
-++++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++... .
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 3 AIEVKNLVKKFHG-QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred cEEEeceEEEECC-eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 3899999999974 5699999999999999999999999999999999999999999999999988642 1
Q ss_pred CCcccEEEEcCCCCCCC-CCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCc
Q 000711 1169 GSGCGIFYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWD 1247 (1338)
Q Consensus 1169 ~lr~~i~~VpQdP~LF~-GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gld 1247 (1338)
..+.+++||||+|.+|. .|++||+.++.... + +. ......+.+.++++.+++....++
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-------~--~~------~~~~~~~~~~~~l~~~gl~~~~~~------ 140 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIV-------K--GE------PKEEATARARELLAKVGLAGKETS------ 140 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHh-------c--CC------CHHHHHHHHHHHHHHcCCcchhhC------
Confidence 23457999999999886 69999996521000 0 00 000012234556666666432211
Q ss_pred ccCcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCCCc-ccccceEE
Q 000711 1248 ANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLELR 1323 (1338)
Q Consensus 1248 t~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~~i-~~~d~~l~ 1323 (1338)
...+||||||||++||||++++|++|||||||++||+++.+.+.+.+++ .++|+|+|+|+++.+ +++|+++.
T Consensus 141 ----~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~ 216 (250)
T PRK11264 141 ----YPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIF 216 (250)
T ss_pred ----ChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 2357999999999999999999999999999999999999888776543 489999999999866 67999999
Q ss_pred EecCC
Q 000711 1324 LIDGE 1328 (1338)
Q Consensus 1324 l~~g~ 1328 (1338)
|.+|+
T Consensus 217 l~~G~ 221 (250)
T PRK11264 217 MDQGR 221 (250)
T ss_pred EECCE
Confidence 97764
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=314.81 Aligned_cols=189 Identities=25% Similarity=0.355 Sum_probs=160.0
Q ss_pred EEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc----------cccccE
Q 000711 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----------DLNKEI 515 (1338)
Q Consensus 446 ~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~----------~~~~~i 515 (1338)
++ ||++.|++ +.+ |+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.+
T Consensus 3 ~~-~l~~~~~~-~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 77 (214)
T cd03297 3 CV-DIEKRLPD-FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKI 77 (214)
T ss_pred ee-eeeEecCC-eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcE
Confidence 44 89999965 344 99999999 99999999999999999999999999999999998541 134579
Q ss_pred EEEecCCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000711 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1338)
Q Consensus 516 ~~v~Q~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1338)
+|+||++.++. .|++||+.++..... ....++++.++++.+++.+..++.+ .+||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al~ 147 (214)
T cd03297 78 GLVFQQYALFPHLNVRENLAFGLKRKR--NREDRISVDELLDLLGLDHLLNRYP--------AQLSGGEKQRVALARALA 147 (214)
T ss_pred EEEecCCccCCCCCHHHHHHHHHhhCC--HHHHHHHHHHHHHHcCCHhHhhcCc--------ccCCHHHHHHHHHHHHHh
Confidence 99999998875 599999987532110 1123456788999999988777655 689999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhH-hhcceEEEccC
Q 000711 595 HKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1338)
Q Consensus 595 ~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~-~~~d~i~~l~~ 649 (1338)
.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+ ..+|++++|++
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 207 (214)
T cd03297 148 AQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMED 207 (214)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEEC
Confidence 99999999999999999999999988764 289999999999987 47999999986
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=315.56 Aligned_cols=200 Identities=20% Similarity=0.227 Sum_probs=161.5
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccccCCcccEEEEcC
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 1179 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~~lr~~i~~VpQ 1179 (1338)
++++||+++|+. +++|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.+....+.+++||||
T Consensus 1 ~~~~~l~~~~~~---~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (213)
T TIGR01277 1 LALDKVRYEYEH---LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77 (213)
T ss_pred CeEEeeeEEeCC---cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEec
Confidence 368999999963 57899999999999999999999999999999999999999999999988765444567999999
Q ss_pred CCCCCCC-CHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCCCh
Q 000711 1180 RPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 1258 (1338)
Q Consensus 1180 dP~LF~G-TIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSg 1258 (1338)
+|.+|.+ |++||+.++..... . .....+..+.++++.+++.....+. ...||+
T Consensus 78 ~~~~~~~~t~~en~~~~~~~~~---------~-------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~LS~ 131 (213)
T TIGR01277 78 ENNLFAHLTVRQNIGLGLHPGL---------K-------LNAEQQEKVVDAAQQVGIADYLDRL----------PEQLSG 131 (213)
T ss_pred cCccCCCCcHHHHHHhHhhccC---------C-------ccHHHHHHHHHHHHHcCcHHHhhCC----------cccCCH
Confidence 9999975 99999975421000 0 0000123455677777775544333 246999
Q ss_pred hHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCc-ccccceEEEecCC
Q 000711 1259 GEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDGE 1328 (1338)
Q Consensus 1259 GQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i-~~~d~~l~l~~g~ 1328 (1338)
|||||++||||++++|+++||||||++||.++.+.+.+.+++ .++|+|+|+|+++.+ +++|+++.|.+|+
T Consensus 132 G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~ 206 (213)
T TIGR01277 132 GQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGK 206 (213)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCe
Confidence 999999999999999999999999999999999888776543 389999999999865 6799999997653
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=329.70 Aligned_cols=203 Identities=22% Similarity=0.240 Sum_probs=160.7
Q ss_pred eEEeeeEEeCCCc----cccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc------cC
Q 000711 1100 ISFSKLDIITPSQ----KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE------AG 1169 (1338)
Q Consensus 1100 I~f~nV~f~yp~~----~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~------~~ 1169 (1338)
|+++||++.|++. .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.++|.++... ..
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 7899999999752 4799999999999999999999999999999999999999999999999988653 12
Q ss_pred CcccEEEEcCCC--CCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchh-hhhhhcccC
Q 000711 1170 SGCGIFYVPQRP--YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSY-LLEREEVGW 1246 (1338)
Q Consensus 1170 lr~~i~~VpQdP--~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~-~i~~~~~Gl 1246 (1338)
.+.+|+|+||+| .+|++|+++|+.++... .+.. .+.....+.++++.++|.. ..++
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~----------~~~~------~~~~~~~~~~~l~~~~l~~~~~~~----- 141 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQN----------FGVS------QEEAEALAREKLALVGISESLFEK----- 141 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHH----------cCCC------HHHHHHHHHHHHHHcCCChhhhhC-----
Confidence 345799999998 68889999999753110 0000 0001122344555555531 1111
Q ss_pred cccCcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCCCc-ccccceE
Q 000711 1247 DANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLEL 1322 (1338)
Q Consensus 1247 dt~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~~i-~~~d~~l 1322 (1338)
....||||||||++||||++++|++|||||||++||+++.+.+.+.+++ .++|||+|+|+++.+ .++|+++
T Consensus 142 -----~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~ 216 (280)
T PRK13649 142 -----NPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVY 216 (280)
T ss_pred -----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEE
Confidence 2357999999999999999999999999999999999999888776543 489999999999865 6899999
Q ss_pred EEecCC
Q 000711 1323 RLIDGE 1328 (1338)
Q Consensus 1323 ~l~~g~ 1328 (1338)
.|.+|+
T Consensus 217 ~l~~G~ 222 (280)
T PRK13649 217 VLEKGK 222 (280)
T ss_pred EEECCE
Confidence 997664
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=329.85 Aligned_cols=206 Identities=18% Similarity=0.165 Sum_probs=161.6
Q ss_pred CCceEEeeeEEeCCCc----cccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcc------
Q 000711 1097 QDSISFSKLDIITPSQ----KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDE------ 1166 (1338)
Q Consensus 1097 ~g~I~f~nV~f~yp~~----~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~------ 1166 (1338)
.|.|+++||+++|++. .++|+|+||+|++||.+||+||||||||||+++|.|+++|.+|+|.++|.++..
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 4789999999999754 259999999999999999999999999999999999999999999999988742
Q ss_pred -ccCCcccEEEEcCCC--CCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCch-hhhhhh
Q 000711 1167 -EAGSGCGIFYVPQRP--YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS-YLLERE 1242 (1338)
Q Consensus 1167 -~~~lr~~i~~VpQdP--~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~-~~i~~~ 1242 (1338)
....|.+++||||+| .+|..|+++|+.++... .+. ..+.....+.++++.++|. ....+
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~----------~~~------~~~~~~~~~~~ll~~~~L~~~~~~~- 146 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVN----------LGE------NKQEAYKKVPELLKLVQLPEDYVKR- 146 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHH----------cCC------CHHHHHHHHHHHHHHcCCChhHhcC-
Confidence 123455799999998 47788999999753110 000 0000112234455555552 12111
Q ss_pred cccCcccCcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCC-ccc
Q 000711 1243 EVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPAL-IPF 1317 (1338)
Q Consensus 1243 ~~Gldt~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~-i~~ 1317 (1338)
....||||||||++||||++++|++|||||||++||+++.+.+.+.+++ .++|+|+|+|+++. .++
T Consensus 147 ---------~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~ 217 (289)
T PRK13645 147 ---------SPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRI 217 (289)
T ss_pred ---------ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh
Confidence 2357999999999999999999999999999999999999888776542 38999999999985 478
Q ss_pred ccceEEEecCC
Q 000711 1318 HSLELRLIDGE 1328 (1338)
Q Consensus 1318 ~d~~l~l~~g~ 1328 (1338)
+|+++.|.+|.
T Consensus 218 ~d~i~~l~~G~ 228 (289)
T PRK13645 218 ADEVIVMHEGK 228 (289)
T ss_pred CCEEEEEECCE
Confidence 99999997664
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=321.97 Aligned_cols=204 Identities=25% Similarity=0.295 Sum_probs=161.5
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcc--------ccCCc
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDE--------EAGSG 1171 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~--------~~~lr 1171 (1338)
|+++||++.|++ +++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.++|.++.. ....+
T Consensus 3 l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 3 IQLNGINCFYGA-HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred EEEEeeEEEECC-eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence 789999999964 579999999999999999999999999999999999999999999999998731 12234
Q ss_pred ccEEEEcCCCCCCCC-CHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC
Q 000711 1172 CGIFYVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 1250 (1338)
Q Consensus 1172 ~~i~~VpQdP~LF~G-TIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~ 1250 (1338)
.+++|+||+|.+|.+ |++||+.+.... ..+.. .....+.+.++++.+++....++.
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~i~~~~~~---------~~~~~------~~~~~~~~~~~l~~~gl~~~~~~~-------- 138 (242)
T PRK11124 82 RNVGMVFQQYNLWPHLTVQQNLIEAPCR---------VLGLS------KDQALARAEKLLERLRLKPYADRF-------- 138 (242)
T ss_pred hheEEEecCccccCCCcHHHHHHHHHHH---------HcCCC------HHHHHHHHHHHHHHcCChhhhhCC--------
Confidence 579999999999975 999999631100 00000 000122345566666664433322
Q ss_pred cccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCCCc-ccccceEEEec
Q 000711 1251 NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLELRLID 1326 (1338)
Q Consensus 1251 ~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~~i-~~~d~~l~l~~ 1326 (1338)
...||||||||++||||++++|+++||||||++||.++.+.+.+.+++ .++|+|+|+|+++.+ .++|+++.|.+
T Consensus 139 --~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~ 216 (242)
T PRK11124 139 --PLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMEN 216 (242)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 347999999999999999999999999999999999999888776643 489999999999876 57999999977
Q ss_pred CCC
Q 000711 1327 GEG 1329 (1338)
Q Consensus 1327 g~g 1329 (1338)
|+-
T Consensus 217 g~i 219 (242)
T PRK11124 217 GHI 219 (242)
T ss_pred CEE
Confidence 653
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=330.52 Aligned_cols=204 Identities=22% Similarity=0.280 Sum_probs=164.1
Q ss_pred CceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc-cCCcccEEE
Q 000711 1098 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-AGSGCGIFY 1176 (1338)
Q Consensus 1098 g~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~-~~lr~~i~~ 1176 (1338)
..|+++||++.|++ ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.|+... ...|++|+|
T Consensus 6 ~~i~i~~l~k~~~~-~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~ 84 (306)
T PRK13537 6 APIDFRNVEKRYGD-KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84 (306)
T ss_pred ceEEEEeEEEEECC-eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEE
Confidence 46999999999964 6799999999999999999999999999999999999999999999999998754 234567999
Q ss_pred EcCCCCCCC-CCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCC
Q 000711 1177 VPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 1255 (1338)
Q Consensus 1177 VpQdP~LF~-GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~ 1255 (1338)
|||+|.+|. .|++||+.|... ..+.. .......+.++++.++|... +++.+ .+
T Consensus 85 v~q~~~~~~~~tv~e~l~~~~~----------~~~~~------~~~~~~~~~~~l~~~~l~~~-------~~~~~---~~ 138 (306)
T PRK13537 85 VPQFDNLDPDFTVRENLLVFGR----------YFGLS------AAAARALVPPLLEFAKLENK-------ADAKV---GE 138 (306)
T ss_pred EeccCcCCCCCcHHHHHHHHHH----------HcCCC------HHHHHHHHHHHHHHcCCchH-------hcCch---hh
Confidence 999999986 699999974110 00000 00011234456666666332 23333 36
Q ss_pred CChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCCCc-ccccceEEEecCC
Q 000711 1256 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLELRLIDGE 1328 (1338)
Q Consensus 1256 LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~~i-~~~d~~l~l~~g~ 1328 (1338)
||+|||||++|||||+++|++|+|||||++||+.+...+.+++++ .|+|+|+++|.++.+ +++|+++.|.+|+
T Consensus 139 LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~ 215 (306)
T PRK13537 139 LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGR 215 (306)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999888776643 489999999999865 6799999997664
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=319.25 Aligned_cols=203 Identities=24% Similarity=0.276 Sum_probs=164.7
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccccCCcccEEEEcC
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 1179 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~~lr~~i~~VpQ 1179 (1338)
|+++|++++|++ +++|+|+||+|.+||.+||+||||||||||+++|.|+++|.+|+|.+||.++......+.+++|+||
T Consensus 1 i~i~~l~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q 79 (237)
T TIGR00968 1 IEIANISKRFGS-FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQ 79 (237)
T ss_pred CEEEEEEEEECC-eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEec
Confidence 578999999975 4699999999999999999999999999999999999999999999999998765444567999999
Q ss_pred CCCCCCC-CHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCCCh
Q 000711 1180 RPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 1258 (1338)
Q Consensus 1180 dP~LF~G-TIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSg 1258 (1338)
+|.+|++ |+++|+.+.... .+. .....++.+.++++.+++....++. ..+||+
T Consensus 80 ~~~~~~~~t~~enl~~~~~~----------~~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~lS~ 133 (237)
T TIGR00968 80 HYALFKHLTVRDNIAFGLEI----------RKH------PKAKIKARVEELLELVQLEGLGDRY----------PNQLSG 133 (237)
T ss_pred ChhhccCCcHHHHHHhHHHh----------cCC------CHHHHHHHHHHHHHHcCCHhHhhCC----------hhhCCH
Confidence 9999976 999999653110 000 0000123345666776664433322 246999
Q ss_pred hHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---c-CCeEEEeccCCCC-cccccceEEEecCCC
Q 000711 1259 GEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---M-GITFVTSSQRPAL-IPFHSLELRLIDGEG 1329 (1338)
Q Consensus 1259 GQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~-~~TvI~IAHRl~~-i~~~d~~l~l~~g~g 1329 (1338)
|||||++||||++++|+++||||||++||.++.+.+.+.+++ . ++|+|+++|+++. .+++|+++.|.+|+-
T Consensus 134 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i 209 (237)
T TIGR00968 134 GQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKI 209 (237)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEE
Confidence 999999999999999999999999999999999888776643 3 7999999999985 577999999976654
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=310.42 Aligned_cols=192 Identities=26% Similarity=0.357 Sum_probs=157.2
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc-cCCcccEEEEc
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-AGSGCGIFYVP 1178 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~-~~lr~~i~~Vp 1178 (1338)
++++||++.|++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++... ...+.+++|+|
T Consensus 1 l~i~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (201)
T cd03231 1 LEADELTCERDG-RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLG 79 (201)
T ss_pred CEEEEEEEEeCC-ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEec
Confidence 478999999864 5799999999999999999999999999999999999999999999999887644 23456799999
Q ss_pred CCCCCC-CCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCCC
Q 000711 1179 QRPYTC-LGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 1257 (1338)
Q Consensus 1179 QdP~LF-~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LS 1257 (1338)
|+|.++ ..|++||+.++.... .+..+.++++.+++....++ . ..+||
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~----------------------~~~~~~~~l~~~~l~~~~~~-------~---~~~LS 127 (201)
T cd03231 80 HAPGIKTTLSVLENLRFWHADH----------------------SDEQVEEALARVGLNGFEDR-------P---VAQLS 127 (201)
T ss_pred cccccCCCcCHHHHHHhhcccc----------------------cHHHHHHHHHHcCChhhhcC-------c---hhhCC
Confidence 999886 579999997542100 12334556666666432211 1 34699
Q ss_pred hhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCC-CCcccccceEEE
Q 000711 1258 LGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRP-ALIPFHSLELRL 1324 (1338)
Q Consensus 1258 gGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl-~~i~~~d~~l~l 1324 (1338)
||||||++||||++++|+++||||||++||..+.+.+.+.+++ .++|+|+|+|+. ....+.++++++
T Consensus 128 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 128 AGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 9999999999999999999999999999999999888877643 489999999987 577788888776
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=320.80 Aligned_cols=198 Identities=20% Similarity=0.249 Sum_probs=163.7
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCC-----CccEEEeCCCCc-------cc
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS-------DL 511 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~-----~~G~i~~~~~~~-------~~ 511 (1338)
.++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+. .+
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 81 (249)
T PRK14253 3 KFNIENLDLFYG-ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL 81 (249)
T ss_pred eEEEeccEEEEC-CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHH
Confidence 588999999996 46899999999999999999999999999999999999986 599999998541 23
Q ss_pred cccEEEEecCCCCCCCCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCCchHH----hcCCCCccccCCCCCChhHHHH
Q 000711 512 NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYLL----DRYPPEKEINWGDELSLGEQQR 586 (1338)
Q Consensus 512 ~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~----~~~~~~~~~~~g~~LSgGqkQR 586 (1338)
++.++|+||+|.++..|++||+.++....... ....++++.++++.+++.+.+ ++. ..+||||||||
T Consensus 82 ~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~LS~G~~qr 153 (249)
T PRK14253 82 RIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSH--------AFGLSGGQQQR 153 (249)
T ss_pred HhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcC--------cccCCHHHHHH
Confidence 56799999999988899999998753211100 011234566778888875432 222 36899999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhHh-hcceEEEccCC
Q 000711 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 587 lalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
++||||++.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+. .||++++|+++
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G 220 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMG 220 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999998875 3689999999999866 69999999863
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=314.61 Aligned_cols=196 Identities=21% Similarity=0.222 Sum_probs=156.3
Q ss_pred EeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc------CCcccEE
Q 000711 1102 FSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA------GSGCGIF 1175 (1338)
Q Consensus 1102 f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~------~lr~~i~ 1175 (1338)
++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++..+. ..+++++
T Consensus 1 i~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKFGD-KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEECC-EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 3689998874 57999999999999999999999999999999999999999999999999875431 2345799
Q ss_pred EEcCCCCCCC-CCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccC
Q 000711 1176 YVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWED 1254 (1338)
Q Consensus 1176 ~VpQdP~LF~-GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~ 1254 (1338)
|+||+|.+|. .|++||+.++... .+. .....++.+.++++.+++....++ . ..
T Consensus 80 ~~~q~~~~~~~~t~~e~~~~~~~~----------~~~------~~~~~~~~~~~~l~~~~l~~~~~~-------~---~~ 133 (206)
T TIGR03608 80 YLFQNFALIENETVEENLDLGLKY----------KKL------SKKEKREKKKEALEKVGLNLKLKQ-------K---IY 133 (206)
T ss_pred EEecchhhccCCcHHHHHHHHHHh----------cCC------CHHHHHHHHHHHHHHcCchhhhcC-------C---hh
Confidence 9999999997 6999999642100 000 000012345566677666433222 1 34
Q ss_pred CCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCCCcccccceEEE
Q 000711 1255 ILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALIPFHSLELRL 1324 (1338)
Q Consensus 1255 ~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~~i~~~d~~l~l 1324 (1338)
+||+|||||++||||++++|++|||||||++||.++.+.+.+.+++ .+.|+|+|+|+++.+..+|+++.|
T Consensus 134 ~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 134 ELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 6999999999999999999999999999999999999988776643 389999999999988888888764
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=326.19 Aligned_cols=198 Identities=21% Similarity=0.222 Sum_probs=163.3
Q ss_pred CcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCC-----CCccEEEeCCCCc--------
Q 000711 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS-------- 509 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~-----~~~G~i~~~~~~~-------- 509 (1338)
..++++||++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+.
T Consensus 38 ~~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~ 116 (286)
T PRK14275 38 PHVVAKNFSIYYGE-FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEV 116 (286)
T ss_pred eEEEEeeeEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchH
Confidence 46899999999964 579999999999999999999999999999999999864 4999999998541
Q ss_pred cccccEEEEecCCCCCCCCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCCch----HHhcCCCCccccCCCCCChhHH
Q 000711 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 584 (1338)
Q Consensus 510 ~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~g~~LSgGqk 584 (1338)
.+++.++|+||+|.++..|++||+.++....... ....++++.++++.+++.+ ..++. ...||||||
T Consensus 117 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LSgGq~ 188 (286)
T PRK14275 117 LLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKN--------ALGLSGGQQ 188 (286)
T ss_pred HhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCC--------hhhCCHHHH
Confidence 2356799999999988889999998753211100 0111345667888888742 23332 368999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHcc--CCeEEEEecChhhHh-hcceEEEccC
Q 000711 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 585 QRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~~--~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
||++|||||+.+|+++||||||++||+.+.+.+.+.+++. ++|+|++||+++.+. .+|++++|++
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~ 256 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYE 256 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999988753 689999999999875 6999999986
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=301.32 Aligned_cols=160 Identities=38% Similarity=0.642 Sum_probs=145.2
Q ss_pred EEEEeEEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC------ccccccEEE
Q 000711 445 IEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1338)
Q Consensus 445 i~~~~v~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~ 517 (1338)
++++|+++.|++. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 4689999998754 379999999999999999999999999999999999999999999999864 123467999
Q ss_pred EecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCC
Q 000711 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1338)
Q Consensus 518 v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p 597 (1338)
+||+|.++..|+.||+ ||||||||++||||++.+|
T Consensus 81 ~~~~~~~~~~t~~e~l---------------------------------------------LS~G~~~rl~la~al~~~p 115 (171)
T cd03228 81 VPQDPFLFSGTIRENI---------------------------------------------LSGGQRQRIAIARALLRDP 115 (171)
T ss_pred EcCCchhccchHHHHh---------------------------------------------hCHHHHHHHHHHHHHhcCC
Confidence 9999988888888876 9999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhHhhcceEEEccC
Q 000711 598 KFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 649 (1338)
Q Consensus 598 ~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~~~~d~i~~l~~ 649 (1338)
+++||||||++||+.+...+.+.+++ .++|+|++||+++.+..||++++|++
T Consensus 116 ~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~ 169 (171)
T cd03228 116 PILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDD 169 (171)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcC
Confidence 99999999999999999999998865 37899999999999888999999976
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=334.85 Aligned_cols=189 Identities=22% Similarity=0.291 Sum_probs=161.4
Q ss_pred eEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc----------cccccEEEE
Q 000711 449 GVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----------DLNKEIFYV 518 (1338)
Q Consensus 449 ~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~----------~~~~~i~~v 518 (1338)
|+++.|++ .. + |+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. ..++.++|+
T Consensus 4 ~l~~~~~~-~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v 80 (354)
T TIGR02142 4 RFSKRLGD-FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80 (354)
T ss_pred EEEEEECC-EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEE
Confidence 78888853 34 4 99999999999999999999999999999999999999999998541 134679999
Q ss_pred ecCCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCC
Q 000711 519 PQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1338)
Q Consensus 519 ~Q~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p 597 (1338)
||++.++. .|++||+.++..... ....++++.++++.+++.++.++.+ .+||||||||++|||||+.+|
T Consensus 81 ~q~~~l~~~~tv~enl~~~~~~~~--~~~~~~~~~~~l~~~gL~~~~~~~~--------~~LSgGqkqRvalAraL~~~p 150 (354)
T TIGR02142 81 FQEARLFPHLSVRGNLRYGMKRAR--PSERRISFERVIELLGIGHLLGRLP--------GRLSGGEKQRVAIGRALLSSP 150 (354)
T ss_pred ecCCccCCCCcHHHHHHHHhhccC--hhHHHHHHHHHHHHcCChhHhcCCh--------hhCCHHHHHHHHHHHHHHcCC
Confidence 99998886 499999998643211 1112345788999999998888876 689999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHh-hcceEEEccCC
Q 000711 598 KFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 598 ~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
+++||||||++||+.+++.+++.+++ .|+|+|+|||+++.+. .+|++++|+++
T Consensus 151 ~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G 208 (354)
T TIGR02142 151 RLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDG 208 (354)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999888764 3899999999999874 69999999863
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=324.16 Aligned_cols=208 Identities=18% Similarity=0.206 Sum_probs=162.0
Q ss_pred ceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCC-----CCCceEEcCCCCCccc----cC
Q 000711 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP-----VVSGSLTKPSQHIDEE----AG 1169 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~-----~~sG~I~idg~dI~~~----~~ 1169 (1338)
.|+++||+++|++ +++|+|+||+|++||.++|+||||||||||+++|.|+++ |++|+|.+||.++... ..
T Consensus 6 ~l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 84 (253)
T PRK14242 6 KMEARGLSFFYGD-FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVE 84 (253)
T ss_pred EEEEeeeEEEECC-eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHH
Confidence 6999999999964 569999999999999999999999999999999999975 5899999999988642 23
Q ss_pred CcccEEEEcCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCccc
Q 000711 1170 SGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDAN 1249 (1338)
Q Consensus 1170 lr~~i~~VpQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~ 1249 (1338)
.+.+++||||+|.+|.+|+++|+.++... .+.. ..+..++.+.++++.+++...+... ++.
T Consensus 85 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~----------~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~---~~~- 145 (253)
T PRK14242 85 LRRRVGMVFQKPNPFPKSIFENVAYGLRV----------NGVK-----DKAYLAERVERSLRHAALWDEVKDR---LHE- 145 (253)
T ss_pred HhhcEEEEecCCCCCcCcHHHHHHHHHHH----------cCCC-----CHHHHHHHHHHHHHHcCCchhhhHH---hhC-
Confidence 35579999999999999999999653100 0000 0000123344556666653221110 011
Q ss_pred CcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCc-ccccceEEEec
Q 000711 1250 LNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALI-PFHSLELRLID 1326 (1338)
Q Consensus 1250 ~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i-~~~d~~l~l~~ 1326 (1338)
...+||||||||++||||++++|++|||||||++||.++.+.+.+.+++ .++|||+|+|+++.+ +++|+++.|.+
T Consensus 146 --~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~ 223 (253)
T PRK14242 146 --SALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYM 223 (253)
T ss_pred --CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEEC
Confidence 2357999999999999999999999999999999999999888777654 378999999999866 78999999976
Q ss_pred CC
Q 000711 1327 GE 1328 (1338)
Q Consensus 1327 g~ 1328 (1338)
|+
T Consensus 224 G~ 225 (253)
T PRK14242 224 GK 225 (253)
T ss_pred CE
Confidence 64
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=301.95 Aligned_cols=162 Identities=29% Similarity=0.381 Sum_probs=145.4
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC-c-------cccccEE
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S-------DLNKEIF 516 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~-~-------~~~~~i~ 516 (1338)
++++|+++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . ..++.++
T Consensus 1 i~~~~l~~~~~~-~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 1 LELKNVSKRYGQ-KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG 79 (178)
T ss_pred CEEEEEEEEECC-eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE
Confidence 468999999864 679999999999999999999999999999999999999999999999854 1 2346799
Q ss_pred EEecCCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHcc
Q 000711 517 YVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1338)
Q Consensus 517 ~v~Q~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~ 595 (1338)
|+||+|.++. .|++||+.+. ||||||||++||||+++
T Consensus 80 ~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G~~qr~~la~al~~ 117 (178)
T cd03229 80 MVFQDFALFPHLTVLENIALG------------------------------------------LSGGQQQRVALARALAM 117 (178)
T ss_pred EEecCCccCCCCCHHHheeec------------------------------------------CCHHHHHHHHHHHHHHC
Confidence 9999998775 5999988652 99999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHc---c-CCeEEEEecChhhHh-hcceEEEccC
Q 000711 596 KPKFAILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 596 ~p~illLDEpts~LD~~~~~~i~~~l~~---~-~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
+|++++|||||++||+.++..+.+.+++ . ++|+|++||+++.+. .+|++++|++
T Consensus 118 ~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 176 (178)
T cd03229 118 DPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRD 176 (178)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeC
Confidence 9999999999999999999999988764 3 789999999999887 7999999975
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=320.74 Aligned_cols=203 Identities=23% Similarity=0.312 Sum_probs=162.7
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc----cCCcccEE
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE----AGSGCGIF 1175 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~----~~lr~~i~ 1175 (1338)
|+++|+++.|++ +++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++... ...+++++
T Consensus 2 l~~~~l~~~~~~-~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 2 IEFKNVSKHFGP-TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred EEEEeEEEEECC-eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 689999999864 5799999999999999999999999999999999999999999999999988753 23355799
Q ss_pred EEcCCCCCCC-CCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccC
Q 000711 1176 YVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWED 1254 (1338)
Q Consensus 1176 ~VpQdP~LF~-GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~ 1254 (1338)
|+||+|.+|. .|+++|+.++... ..+.. ....++.+.++++.+++....++. ..
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~---------~~~~~------~~~~~~~~~~~l~~~gl~~~~~~~----------~~ 135 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLR---------VRGAS------KEEAEKQARELLAKVGLAERAHHY----------PS 135 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHH---------hcCCC------HHHHHHHHHHHHHHcCChHHHhcC----------hh
Confidence 9999999886 5999999753100 00000 000123455666766664433222 34
Q ss_pred CCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCCCc-ccccceEEEecCC
Q 000711 1255 ILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLELRLIDGE 1328 (1338)
Q Consensus 1255 ~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~~i-~~~d~~l~l~~g~ 1328 (1338)
.||+|||||++||||++++|++++|||||++||.++.+.+.+.+++ .++|+|+|+|+++.+ .++|+++.|.+|+
T Consensus 136 ~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 213 (240)
T PRK09493 136 ELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGR 213 (240)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999888776643 489999999999876 5799999997664
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-34 Score=323.01 Aligned_cols=204 Identities=20% Similarity=0.234 Sum_probs=165.9
Q ss_pred CCcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCC-----CccEEEeCCCCc-------
Q 000711 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS------- 509 (1338)
Q Consensus 442 ~~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~-----~~G~i~~~~~~~------- 509 (1338)
.+.++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 23 ~~~l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 23 QTALEVRNLNLFYG-DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred CcEEEEEEEEEEEC-CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 45799999999996 46899999999999999999999999999999999999984 899999998641
Q ss_pred -cccccEEEEecCCCCCCCCHHHHhcCCCCCCcc-cCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHH
Q 000711 510 -DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRL 587 (1338)
Q Consensus 510 -~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRl 587 (1338)
.+++.++|+||++.++..|++||+.++...... .....++++.++++.+++.+.+.... .....+||||||||+
T Consensus 102 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----~~~~~~LS~Gq~qrv 177 (272)
T PRK14236 102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRL----HENAFGLSGGQQQRL 177 (272)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHh----hCCcccCCHHHHHHH
Confidence 235689999999998888999999875321110 00112345778888888864322110 011368999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 588 alARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
+||||++++|+++||||||++||+.++..+.+.+++ .+.|+|++||+++.+ ..+|++++|+++
T Consensus 178 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G 243 (272)
T PRK14236 178 VIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMG 243 (272)
T ss_pred HHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECC
Confidence 999999999999999999999999999999998865 378999999999986 479999999863
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=326.64 Aligned_cols=204 Identities=19% Similarity=0.223 Sum_probs=166.3
Q ss_pred ceEEeeeEEeCCC-----ccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc---cCC
Q 000711 1099 SISFSKLDIITPS-----QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE---AGS 1170 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~-----~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~---~~l 1170 (1338)
-|+++||++.|++ .+++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++.+. ...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 5899999999974 35799999999999999999999999999999999999999999999999988653 223
Q ss_pred cccEEEEcCCCC--CCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcc
Q 000711 1171 GCGIFYVPQRPY--TCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDA 1248 (1338)
Q Consensus 1171 r~~i~~VpQdP~--LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt 1248 (1338)
+++++||||+|. +|.-|+.+|+.++... .+. .....++.+.++++.++|....++.
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~----------~~~------~~~~~~~~~~~~l~~~gL~~~~~~~------ 141 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPEN----------LGI------PPEEIRERVDESLKKVGMYEYRRHA------ 141 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhh----------cCC------CHHHHHHHHHHHHHHCCCHhHhhCC------
Confidence 567999999994 6767899999764210 000 0001133456677777776554443
Q ss_pred cCcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCcccccceEEE
Q 000711 1249 NLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALIPFHSLELRL 1324 (1338)
Q Consensus 1249 ~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i~~~d~~l~l 1324 (1338)
..+||||||||++||||++++|++|||||||++||+.+.+.+.+.+++ .|+|+|+|+|+++.+..+|++++|
T Consensus 142 ----~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l 217 (280)
T PRK13633 142 ----PHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVM 217 (280)
T ss_pred ----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEE
Confidence 247999999999999999999999999999999999999888776543 389999999999988889999999
Q ss_pred ecCC
Q 000711 1325 IDGE 1328 (1338)
Q Consensus 1325 ~~g~ 1328 (1338)
.+|+
T Consensus 218 ~~G~ 221 (280)
T PRK13633 218 DSGK 221 (280)
T ss_pred ECCE
Confidence 7764
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=320.18 Aligned_cols=202 Identities=23% Similarity=0.236 Sum_probs=164.2
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCC-----CccEEEeCCCCc--------c
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS--------D 510 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~-----~~G~i~~~~~~~--------~ 510 (1338)
.|+++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.+. .
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~ 81 (250)
T PRK14262 3 IIEIENFSAYYG-EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTE 81 (250)
T ss_pred eEEEEeeEEEeC-CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHH
Confidence 589999999986 46899999999999999999999999999999999999984 899999998541 2
Q ss_pred ccccEEEEecCCCCCCCCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHH
Q 000711 511 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1338)
Q Consensus 511 ~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlal 589 (1338)
+++.++|+||+|.++..|++||+.++....... ....++++.++++.+++.+.++... .....+||||||||++|
T Consensus 82 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----~~~~~~LS~Gq~qr~~l 157 (250)
T PRK14262 82 YRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSEL----NKPGTRLSGGQQQRLCI 157 (250)
T ss_pred hhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHH----hCChhhcCHHHHHHHHH
Confidence 356799999999988899999998753211000 0112345677888888864321110 01136899999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 590 ARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
|||++.+|++++|||||++||+.+...+.+.+++ .++|+|++||+++.+ ..+|++++++++
T Consensus 158 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G 221 (250)
T PRK14262 158 ARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRG 221 (250)
T ss_pred HHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999998865 378999999999965 579999999863
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=335.08 Aligned_cols=201 Identities=32% Similarity=0.439 Sum_probs=172.6
Q ss_pred CCcEEEEeEEEEcCC------C----CeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC---
Q 000711 442 ANYIEFSGVKVVTPT------G----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--- 508 (1338)
Q Consensus 442 ~~~i~~~~v~~~~~~------~----~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~--- 508 (1338)
...++++|+++.|.. + ..+++|+||++++||+++|||+||||||||.|+|+|+.+|++|+|.++|.+
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~ 357 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDL 357 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccc
Confidence 345889999998863 1 368999999999999999999999999999999999999999999999865
Q ss_pred -----ccccccEEEEecCCCC---CCCCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCCch-HHhcCCCCccccCCCC
Q 000711 509 -----SDLNKEIFYVPQRPYT---AVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGDE 578 (1338)
Q Consensus 509 -----~~~~~~i~~v~Q~~~l---~~~tl~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~g~~ 578 (1338)
...++++-+++|+|+- +..||+++|..|....... .....+++.++++.++|.. +.+++| .+
T Consensus 358 ~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP--------~e 429 (539)
T COG1123 358 TGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYP--------HE 429 (539)
T ss_pred ccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCc--------hh
Confidence 1245689999999974 5679999998876432211 1223456888999999987 789998 68
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHh-hcceEEEccCC
Q 000711 579 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 579 LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
||||||||+||||||..+|+++++|||||+||+.+...+.+.+++ .|.|+|+||||++.++ .||+|.+|..+
T Consensus 430 lSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G 506 (539)
T COG1123 430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDG 506 (539)
T ss_pred cCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECC
Confidence 999999999999999999999999999999999999999988754 5999999999999986 69999999863
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=320.87 Aligned_cols=199 Identities=22% Similarity=0.252 Sum_probs=162.6
Q ss_pred CcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCC--C---CccEEEeCCCCc--------
Q 000711 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP--L---VSGHIAKPGVGS-------- 509 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~--~---~~G~i~~~~~~~-------- 509 (1338)
..++++||++.|++ +++++|+||++++||+++|+||||||||||+++|+|+.+ | ++|+|.++|.+.
T Consensus 4 ~~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 4 KIITSSDVHLFYGK-FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred ceEEEEeEEEEECC-eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 36899999999964 689999999999999999999999999999999999975 4 599999998641
Q ss_pred cccccEEEEecCCCCCCCCHHHHhcCCCCCCcc-cCCCCHHHHHHHHHHcCCch----HHhcCCCCccccCCCCCChhHH
Q 000711 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 584 (1338)
Q Consensus 510 ~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~g~~LSgGqk 584 (1338)
.+++.++|+||++.++..|+++|+.++...... .....++++.+.++.+++.. ..++. ..+||||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~--------~~~LS~Gq~ 154 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHES--------ALSLSGGQQ 154 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcC--------cccCCHHHH
Confidence 234679999999998889999999875321110 00111345566777777642 22222 368999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHcc--CCeEEEEecChhhHh-hcceEEEccCC
Q 000711 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 585 QRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~~--~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
||++||||++.+|+++||||||++||+.+.+.+.+.+++. +.|+|+|||+++.+. .+|++++|+++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G 223 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTG 223 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999988653 689999999999875 79999999863
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=323.94 Aligned_cols=207 Identities=24% Similarity=0.292 Sum_probs=164.5
Q ss_pred ceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEEE
Q 000711 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFY 1176 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~~ 1176 (1338)
.|+++||++.|++ +++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++|.++... ..++++++|
T Consensus 11 ~l~i~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 89 (265)
T PRK10575 11 TFALRNVSFRVPG-RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAY 89 (265)
T ss_pred eEEEeeEEEEECC-EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEE
Confidence 5999999999974 5799999999999999999999999999999999999999999999999988654 233457999
Q ss_pred EcCCCCCCCC-CHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCC
Q 000711 1177 VPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 1255 (1338)
Q Consensus 1177 VpQdP~LF~G-TIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~ 1255 (1338)
+||+|.++.+ |+++|+.++..... ... + ......++.+.++++.+++....++. ..+
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~~---~~~---~------~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~ 147 (265)
T PRK10575 90 LPQQLPAAEGMTVRELVAIGRYPWH---GAL---G------RFGAADREKVEEAISLVGLKPLAHRL----------VDS 147 (265)
T ss_pred eccCCCCCCCccHHHHHHhCccccc---ccc---c------CCCHHHHHHHHHHHHHcCCHHHhcCC----------ccc
Confidence 9999887665 99999976421000 000 0 00001133456677777775433332 246
Q ss_pred CChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCc-ccccceEEEecCC
Q 000711 1256 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDGE 1328 (1338)
Q Consensus 1256 LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i-~~~d~~l~l~~g~ 1328 (1338)
||||||||++||||++.+|++|||||||++||.++.+.+.+.+++ .++|+|+|+|+++.+ +++|+++.|.+|+
T Consensus 148 LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~ 225 (265)
T PRK10575 148 LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGE 225 (265)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 999999999999999999999999999999999999887776542 389999999999876 6899999997654
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=329.88 Aligned_cols=203 Identities=24% Similarity=0.300 Sum_probs=161.2
Q ss_pred ceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc-cCCcccEEEE
Q 000711 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-AGSGCGIFYV 1177 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~-~~lr~~i~~V 1177 (1338)
.|+++||++.|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++... ...|.+++||
T Consensus 4 ~i~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v 82 (303)
T TIGR01288 4 AIDLVGVSKSYGD-KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVV 82 (303)
T ss_pred EEEEEeEEEEeCC-eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEE
Confidence 5899999999964 5699999999999999999999999999999999999999999999999988643 2335679999
Q ss_pred cCCCCCCC-CCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCC
Q 000711 1178 PQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDIL 1256 (1338)
Q Consensus 1178 pQdP~LF~-GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~L 1256 (1338)
||+|.+|. .|+++|+.+... ..+.. .......+.++++.+++.+.. +.. ...|
T Consensus 83 ~q~~~~~~~~tv~e~l~~~~~----------~~~~~------~~~~~~~~~~ll~~~~l~~~~-------~~~---~~~L 136 (303)
T TIGR01288 83 PQFDNLDPEFTVRENLLVFGR----------YFGMS------TREIEAVIPSLLEFARLESKA-------DVR---VALL 136 (303)
T ss_pred eccccCCcCCcHHHHHHHHHH----------HcCCC------HHHHHHHHHHHHHHCCChhHh-------cCc---hhhC
Confidence 99999885 699999963110 00000 000012234556666664322 222 2469
Q ss_pred ChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCCCc-ccccceEEEecCC
Q 000711 1257 SLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLELRLIDGE 1328 (1338)
Q Consensus 1257 SgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~~i-~~~d~~l~l~~g~ 1328 (1338)
|||||||++||||++++|++|||||||++||+.+.+.+.+.+++ .|+|+|+++|+++.+ +++|+++.|.+|+
T Consensus 137 SgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~ 212 (303)
T TIGR01288 137 SGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGR 212 (303)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999888776643 489999999999865 6799999997653
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=326.15 Aligned_cols=201 Identities=22% Similarity=0.191 Sum_probs=159.5
Q ss_pred EEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc------CCcccE
Q 000711 1101 SFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA------GSGCGI 1174 (1338)
Q Consensus 1101 ~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~------~lr~~i 1174 (1338)
.++||+..|. ..++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.... ..+.++
T Consensus 26 ~~~~~~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 26 SKEEILKKTG-QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhhcC-CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 4667777774 456899999999999999999999999999999999999999999999999887542 123579
Q ss_pred EEEcCCCCCCC-CCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCccc
Q 000711 1175 FYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 1253 (1338)
Q Consensus 1175 ~~VpQdP~LF~-GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g 1253 (1338)
+||||+|.+|. .|+++|+.++... .+.. ....++.+.++++.++|.....+. .
T Consensus 105 ~~v~q~~~~~~~~tv~e~l~~~~~~----------~~~~------~~~~~~~~~~~l~~~~l~~~~~~~----------~ 158 (269)
T cd03294 105 SMVFQSFALLPHRTVLENVAFGLEV----------QGVP------RAEREERAAEALELVGLEGWEHKY----------P 158 (269)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHh----------cCCC------HHHHHHHHHHHHHHcCCHhHhhCC----------c
Confidence 99999999985 6999999753110 0000 000123455667777775444332 2
Q ss_pred CCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCc-ccccceEEEecCC
Q 000711 1254 DILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDGE 1328 (1338)
Q Consensus 1254 ~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i-~~~d~~l~l~~g~ 1328 (1338)
.+||||||||++||||++++|+||||||||++||..+.+.+.+.+++ .|+|+|+++|+++.+ +++|+++.|.+|+
T Consensus 159 ~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~ 238 (269)
T cd03294 159 DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGR 238 (269)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 46999999999999999999999999999999999999888876543 389999999999754 7899999997654
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=320.45 Aligned_cols=199 Identities=25% Similarity=0.350 Sum_probs=156.5
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc---CCcccEEE
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA---GSGCGIFY 1176 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~---~lr~~i~~ 1176 (1338)
|+++||++.|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|.+|+|.+||.++.... ..+.+++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYYGQ-SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred CEEEeEEEEeCC-eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 578999999975 57999999999999999999999999999999999999999999999999887652 12457999
Q ss_pred EcCCCCCCCC-CHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCC-chhhhhhhcccCcccCcccC
Q 000711 1177 VPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVR-LSYLLEREEVGWDANLNWED 1254 (1338)
Q Consensus 1177 VpQdP~LF~G-TIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~-L~~~i~~~~~Gldt~~~~g~ 1254 (1338)
+||+|.+|.+ |+++|+.++..... .. ..+...++++.++ +.... +. ...
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~----------~~---------~~~~~~~~l~~~~~l~~~~-------~~---~~~ 130 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALP----------RR---------SRKIPDEIYELFPVLKEML-------GR---RGG 130 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcC----------cc---------hHHHHHHHHHHHHhHHHHh-------hC---Chh
Confidence 9999999986 99999975321000 00 0011122223222 11111 11 234
Q ss_pred CCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCcc-cccceEEEecCC
Q 000711 1255 ILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALIP-FHSLELRLIDGE 1328 (1338)
Q Consensus 1255 ~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i~-~~d~~l~l~~g~ 1328 (1338)
.||||||||++||||++++|+++||||||++||..+.+.+.+.+++ .++|+|+|+|+++.+. ++|+++++.+|+
T Consensus 131 ~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~ 209 (230)
T TIGR03410 131 DLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGR 209 (230)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999888776643 3799999999998765 699999997654
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=325.21 Aligned_cols=211 Identities=20% Similarity=0.203 Sum_probs=164.5
Q ss_pred CCceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCC-----CCceEEcCCCCCccc----
Q 000711 1097 QDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPV-----VSGSLTKPSQHIDEE---- 1167 (1338)
Q Consensus 1097 ~g~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~-----~sG~I~idg~dI~~~---- 1167 (1338)
.+.|+++||++.|++ +++|+|+||+|+|||.++|+|+||||||||+++|.|+++| ++|+|.+||.++...
T Consensus 17 ~~~l~~~nl~~~~~~-~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~ 95 (267)
T PRK14235 17 EIKMRARDVSVFYGE-KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDV 95 (267)
T ss_pred CceEEEEeEEEEECC-EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccch
Confidence 468999999999974 5799999999999999999999999999999999999975 899999999988642
Q ss_pred cCCcccEEEEcCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCc
Q 000711 1168 AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWD 1247 (1338)
Q Consensus 1168 ~~lr~~i~~VpQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gld 1247 (1338)
...|.+++||||+|.+|.+|+++|+.++... .+.. . .....++.+.++++.+++...+.. -++
T Consensus 96 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~----------~~~~---~-~~~~~~~~~~~~l~~~~l~~~~~~---~~~ 158 (267)
T PRK14235 96 VELRARVGMVFQKPNPFPKSIYENVAYGPRI----------HGLA---R-SKAELDEIVETSLRKAGLWEEVKD---RLH 158 (267)
T ss_pred HHHhhceEEEecCCCCCCCcHHHHHHHHHHh----------cccc---c-chHHHHHHHHHHHHHcCCchhhhH---Hhh
Confidence 2345679999999999999999999753110 0000 0 000012334556666666332210 011
Q ss_pred ccCcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCc-ccccceEEE
Q 000711 1248 ANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALI-PFHSLELRL 1324 (1338)
Q Consensus 1248 t~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i-~~~d~~l~l 1324 (1338)
. ....||||||||++||||++++|++|||||||++||..+.+.+.+.+++ .+.|+|+|+|+++.+ .++|+++.|
T Consensus 159 ~---~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l 235 (267)
T PRK14235 159 E---PGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFF 235 (267)
T ss_pred C---CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEE
Confidence 1 2357999999999999999999999999999999999999888777653 378999999999876 678999999
Q ss_pred ecCC
Q 000711 1325 IDGE 1328 (1338)
Q Consensus 1325 ~~g~ 1328 (1338)
.+|+
T Consensus 236 ~~G~ 239 (267)
T PRK14235 236 HLGN 239 (267)
T ss_pred ECCE
Confidence 7654
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=302.79 Aligned_cols=166 Identities=26% Similarity=0.386 Sum_probs=147.1
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc-cCCcccEEEEc
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-AGSGCGIFYVP 1178 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~-~~lr~~i~~Vp 1178 (1338)
++++||++.|++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++... ...+.+++|+|
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (173)
T cd03230 1 IEVRNLSKRYGK-KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLP 79 (173)
T ss_pred CEEEEEEEEECC-eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEe
Confidence 478999999875 4699999999999999999999999999999999999999999999999988654 23355799999
Q ss_pred CCCCCCCC-CHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCCC
Q 000711 1179 QRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 1257 (1338)
Q Consensus 1179 QdP~LF~G-TIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LS 1257 (1338)
|+|.+|.+ |+++|+. ||
T Consensus 80 q~~~~~~~~tv~~~~~--------------------------------------------------------------LS 97 (173)
T cd03230 80 EEPSLYENLTVRENLK--------------------------------------------------------------LS 97 (173)
T ss_pred cCCccccCCcHHHHhh--------------------------------------------------------------cC
Confidence 99999886 8888861 49
Q ss_pred hhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCCCcc-cccceEEEecCC
Q 000711 1258 LGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALIP-FHSLELRLIDGE 1328 (1338)
Q Consensus 1258 gGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~~i~-~~d~~l~l~~g~ 1328 (1338)
||||||++||||++++|++++|||||++||.++.+.+.+.+++ .|.|+|+|+|+.+.+. ++|+++.+.+|+
T Consensus 98 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~ 172 (173)
T cd03230 98 GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGR 172 (173)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999999999888776643 3789999999998665 899999997764
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=318.43 Aligned_cols=202 Identities=21% Similarity=0.273 Sum_probs=163.7
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccccCCcccEEEEcC
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 1179 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~~lr~~i~~VpQ 1179 (1338)
|+++|+++.|++ +++++|+||+|+|||+++|+||||||||||+++|.|+++|.+|+|.+||.++......+..++||||
T Consensus 1 l~~~~l~~~~~~-~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (232)
T cd03300 1 IELENVSKFYGG-FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQ 79 (232)
T ss_pred CEEEeEEEEeCC-eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEec
Confidence 578999999975 4799999999999999999999999999999999999999999999999988765434567999999
Q ss_pred CCCCCCC-CHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCCCh
Q 000711 1180 RPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 1258 (1338)
Q Consensus 1180 dP~LF~G-TIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSg 1258 (1338)
+|.+|.+ |+++|+.++... .+. .+...+..+.++++.+++.....+. ...||+
T Consensus 80 ~~~~~~~~t~~~nl~~~~~~----------~~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~lS~ 133 (232)
T cd03300 80 NYALFPHLTVFENIAFGLRL----------KKL------PKAEIKERVAEALDLVQLEGYANRK----------PSQLSG 133 (232)
T ss_pred ccccCCCCcHHHHHHHHHHh----------cCC------CHHHHHHHHHHHHHHcCCchhhcCC----------hhhCCH
Confidence 9999976 999999643110 000 0001123445566666665444332 246999
Q ss_pred hHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCc-ccccceEEEecCC
Q 000711 1259 GEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDGE 1328 (1338)
Q Consensus 1259 GQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i-~~~d~~l~l~~g~ 1328 (1338)
|||||++||||++++|+++||||||++||..+.+.+.+++++ .++|+|+++|++..+ +.+|+++.|.+|+
T Consensus 134 G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~ 208 (232)
T cd03300 134 GQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGK 208 (232)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 999999999999999999999999999999999988776643 389999999999864 6789999997764
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=323.09 Aligned_cols=198 Identities=28% Similarity=0.427 Sum_probs=164.2
Q ss_pred cEEEEeEEEEcCC--------CCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc------
Q 000711 444 YIEFSGVKVVTPT--------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------ 509 (1338)
Q Consensus 444 ~i~~~~v~~~~~~--------~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~------ 509 (1338)
.|+++||++.|++ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 4889999999974 46899999999999999999999999999999999999999999999998641
Q ss_pred ---cccccEEEEecCCC--CC-CCCHHHHhcCCCCCC-cccCCCCHHHHHHHHHHcCCc-hHHhcCCCCccccCCCCCCh
Q 000711 510 ---DLNKEIFYVPQRPY--TA-VGTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSL 581 (1338)
Q Consensus 510 ---~~~~~i~~v~Q~~~--l~-~~tl~eni~~~~~~~-~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~g~~LSg 581 (1338)
.+++.++|+||++. ++ ..|+.+|+.++.... .........++.++++.+++. +..++.+ ..|||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--------~~LS~ 154 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRP--------PQLSG 154 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCC--------ccCCh
Confidence 13567999999983 33 469999986532110 000111234678889999986 4555544 68999
Q ss_pred hHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 582 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 582 GqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
|||||++|||||+++|+++||||||++||+.+++.+.+.+++ .++|+|++||+++.+. .||++++|++
T Consensus 155 Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~ 227 (268)
T PRK10419 155 GQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDN 227 (268)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999998887753 3889999999999886 6999999986
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-34 Score=320.93 Aligned_cols=202 Identities=21% Similarity=0.220 Sum_probs=163.7
Q ss_pred CcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCC-----CccEEEeCCCCc--------
Q 000711 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS-------- 509 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~-----~~G~i~~~~~~~-------- 509 (1338)
..++++||++.|+ ++++++|+||++++||+++|+|+||||||||+|+|+|+++| ++|+|.++|.+.
T Consensus 6 ~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 6 PAIKVKDLSFYYN-TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred ceEEEEEEEEEEC-CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 4699999999985 46799999999999999999999999999999999999985 489999998641
Q ss_pred cccccEEEEecCCCCCCCCHHHHhcCCCCCCcccC-CCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHH
Q 000711 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1338)
Q Consensus 510 ~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRla 588 (1338)
.+++.++|+||++.++..|++||+.++........ ...++.+.++++.+++.+.+.... ......||||||||++
T Consensus 85 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~----~~~~~~LS~G~~qrv~ 160 (259)
T PRK14260 85 RLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKL----NKSALGLSGGQQQRLC 160 (259)
T ss_pred hhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHh----cCCcccCCHHHHHHHH
Confidence 23457999999999888999999987532110000 112345678888888854322110 0123689999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 589 lARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
|||||+++|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+. .||++++|+.
T Consensus 161 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~ 224 (259)
T PRK14260 161 IARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFST 224 (259)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEec
Confidence 99999999999999999999999999999998865 3689999999999875 7999999973
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=325.62 Aligned_cols=204 Identities=22% Similarity=0.274 Sum_probs=164.4
Q ss_pred ceEEeeeEEeCCC--ccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccE
Q 000711 1099 SISFSKLDIITPS--QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGI 1174 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~--~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i 1174 (1338)
-|+++||++.|++ ..++|+|+||+|++||.++|+|+||||||||+++|.|+++|.+|+|.+||.++... ...+.++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 5899999999974 34699999999999999999999999999999999999999999999999988754 2345679
Q ss_pred EEEcCCC--CCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcc
Q 000711 1175 FYVPQRP--YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNW 1252 (1338)
Q Consensus 1175 ~~VpQdP--~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~ 1252 (1338)
+||||+| .++..|+.+||.++.... +. ......+.+.++++.+++..+..+.
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~----------~~------~~~~~~~~~~~~l~~~~l~~~~~~~---------- 137 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQ----------GI------PREEMIKRVDEALLAVNMLDFKTRE---------- 137 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHc----------CC------CHHHHHHHHHHHHHHCCCHhHhhCC----------
Confidence 9999999 467889999997542100 00 0000112345566777775443322
Q ss_pred cCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1253 EDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1253 g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
...||||||||++||||++++|++|||||||++||+.+.+.+.+++++ .|+|+|+|+|+++.+..+|++++|.+|.
T Consensus 138 ~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~ 217 (277)
T PRK13642 138 PARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGE 217 (277)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCE
Confidence 346999999999999999999999999999999999999888776532 3899999999999888899999997664
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=320.05 Aligned_cols=200 Identities=21% Similarity=0.227 Sum_probs=163.3
Q ss_pred CcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCC-----CCccEEEeCCCCc--------
Q 000711 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS-------- 509 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~-----~~~G~i~~~~~~~-------- 509 (1338)
..|+++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 9 ~~l~i~~v~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 9 TVLRTENLNVYYG-SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred eEEEEeeeEEEEC-CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 3699999999985 4589999999999999999999999999999999999986 4899999998541
Q ss_pred cccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHH
Q 000711 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1338)
Q Consensus 510 ~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlal 589 (1338)
.++++++|++|++.+++.|+.||+.++...... ....++++.++++.+++.+.+.... .....+||||||||++|
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~l~~~~----~~~~~~LSgGq~qrv~l 162 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGY-KGDMDELVERSLRQAALWDEVKDKL----KQSGLSLSGGQQQRLCI 162 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCc-chHHHHHHHHHHHHhCchhhHHHHh----cCCcccCCHHHHHHHHH
Confidence 235679999999998888999999886432110 1112345667788888754332110 11236899999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhH-hhcceEEEcc
Q 000711 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLD 648 (1338)
Q Consensus 590 ARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~-~~~d~i~~l~ 648 (1338)
||||+++|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+ ..||++++|+
T Consensus 163 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~ 224 (264)
T PRK14243 163 ARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFN 224 (264)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEe
Confidence 9999999999999999999999999999998865 368999999999876 5789999997
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=294.74 Aligned_cols=197 Identities=22% Similarity=0.311 Sum_probs=160.6
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc-------cccccEE
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------DLNKEIF 516 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~-------~~~~~i~ 516 (1338)
.++++||+.+|. ...+|+++||++++||+++|+||||+|||||+|+|+|+.++.+|+|.++|.|- -.+..|+
T Consensus 3 mL~v~~l~~~YG-~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 3 MLEVENLSAGYG-KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred ceeEEeEeeccc-ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 589999999994 47899999999999999999999999999999999999999999999999871 1356799
Q ss_pred EEecCCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcC-CchHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000711 517 YVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVD-LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1338)
Q Consensus 517 ~v~Q~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1338)
||||...+|. .||.||+..+...... +......++++.+.+- |.+..++ .+.+|||||||-+||||||+
T Consensus 82 ~VPegR~iF~~LTVeENL~~g~~~~~~-~~~~~~~~e~v~~lFP~Lker~~~--------~aG~LSGGEQQMLAiaRALm 152 (237)
T COG0410 82 YVPEGRRIFPRLTVEENLLLGAYARRD-KEAQERDLEEVYELFPRLKERRNQ--------RAGTLSGGEQQMLAIARALM 152 (237)
T ss_pred eCcccccchhhCcHHHHHhhhhhcccc-cccccccHHHHHHHChhHHHHhcC--------cccCCChHHHHHHHHHHHHh
Confidence 9999988775 5999999987433211 0111112444544442 3333333 35799999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 595 HKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 595 ~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
.+|++|+|||||.+|-|.-.++|++.+++ .|.||++|-++.... +.+|+.++|+++
T Consensus 153 ~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~G 213 (237)
T COG0410 153 SRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENG 213 (237)
T ss_pred cCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCC
Confidence 99999999999999999999999887754 377999999998865 689999999973
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=334.03 Aligned_cols=190 Identities=22% Similarity=0.181 Sum_probs=155.6
Q ss_pred ccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc--CC----cccEEEEcCCCCCCC
Q 000711 1112 QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GS----GCGIFYVPQRPYTCL 1185 (1338)
Q Consensus 1112 ~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~--~l----r~~i~~VpQdP~LF~ 1185 (1338)
.+++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.|+...+ .+ |++++||||+|.||+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 456999999999999999999999999999999999999999999999999998752 22 568999999999997
Q ss_pred -CCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCCChhHHHHH
Q 000711 1186 -GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRL 1264 (1338)
Q Consensus 1186 -GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSgGQrQrl 1264 (1338)
.|+++||.++... .+. .....++.+.++++.++|..+.++. ..+||||||||+
T Consensus 85 ~~TV~eNi~~~~~~----------~~~------~~~~~~~~~~~~l~~vgL~~~~~~~----------p~~LSGGq~QRV 138 (363)
T TIGR01186 85 HMTILQNTSLGPEL----------LGW------PEQERKEKALELLKLVGLEEYEHRY----------PDELSGGMQQRV 138 (363)
T ss_pred CCCHHHHHHHHHHH----------cCC------CHHHHHHHHHHHHHhcCCchhhhCC----------hhhCCHHHHHHH
Confidence 5999999763210 000 0000123456677777775544443 357999999999
Q ss_pred HHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHH----hcCCeEEEeccCCC-CcccccceEEEecC
Q 000711 1265 GMARLFFHKPKFGILDECTNATSVDVEEQLYRLAK----DMGITFVTSSQRPA-LIPFHSLELRLIDG 1327 (1338)
Q Consensus 1265 aiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~----~~~~TvI~IAHRl~-~i~~~d~~l~l~~g 1327 (1338)
||||||+++|+|||||||||+||+.+.+.+++.+. +.++|+|.|+|+++ ..+++|+++.|.+|
T Consensus 139 ~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G 206 (363)
T TIGR01186 139 GLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAG 206 (363)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999998887653 24899999999997 57889999999665
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=319.92 Aligned_cols=202 Identities=21% Similarity=0.252 Sum_probs=163.9
Q ss_pred CCcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCC-----CccEEEeCCCCc-------
Q 000711 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS------- 509 (1338)
Q Consensus 442 ~~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~-----~~G~i~~~~~~~------- 509 (1338)
...|+++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 18 ~~~l~~~nl~~~~~~-~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 18 HSVFEVEGVKVFYGG-FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred CceEEEeeEEEEeCC-eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 347999999999964 5799999999999999999999999999999999999863 699999998641
Q ss_pred -cccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHH
Q 000711 510 -DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1338)
Q Consensus 510 -~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRla 588 (1338)
.+++.++|+||++.++..|+.||+.++...... ....++.+.++++.+++...+.... ......||||||||++
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~l~~~~----~~~~~~LSgGq~qrv~ 171 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGY-KGNLDELVEDSLRRAAIWEEVKDKL----KEKGTALSGGQQQRLC 171 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCc-hHHHHHHHHHHHHHcccchhhHHHh----cCCcccCCHHHHHHHH
Confidence 235679999999998888999999875321100 0112345667788888753322110 0113689999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHcc--CCeEEEEecChhhH-hhcceEEEccC
Q 000711 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALV-AFHDVVLSLDG 649 (1338)
Q Consensus 589 lARal~~~p~illLDEpts~LD~~~~~~i~~~l~~~--~~t~i~itH~~~~~-~~~d~i~~l~~ 649 (1338)
|||||+.+|+++||||||++||+.+.+.+.+.+++. ++|+|++||+++.+ ..||++++|++
T Consensus 172 LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 235 (274)
T PRK14265 172 IARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNT 235 (274)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEec
Confidence 999999999999999999999999999999988753 78999999999877 57999999973
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=326.68 Aligned_cols=204 Identities=24% Similarity=0.276 Sum_probs=162.0
Q ss_pred ceEEeeeEEeCCCc----cccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc------c
Q 000711 1099 SISFSKLDIITPSQ----KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE------A 1168 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~----~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~------~ 1168 (1338)
.|+++||++.|++. +++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++... .
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 37899999999642 5799999999999999999999999999999999999999999999999988542 1
Q ss_pred CCcccEEEEcCCC--CCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCch-hhhhhhccc
Q 000711 1169 GSGCGIFYVPQRP--YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS-YLLEREEVG 1245 (1338)
Q Consensus 1169 ~lr~~i~~VpQdP--~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~-~~i~~~~~G 1245 (1338)
..+.+++|+||+| .+|..|++|||.++... .+. ..+..+..+.++++.++|. ...++
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~----------~~~------~~~~~~~~~~~~l~~~gL~~~~~~~---- 141 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKN----------FGF------SEDEAKEKALKWLKKVGLSEDLISK---- 141 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHH----------cCC------CHHHHHHHHHHHHHHcCCChhHhhC----
Confidence 2345799999998 57888999999653100 000 0000122345566766663 22222
Q ss_pred CcccCcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCCCc-ccccce
Q 000711 1246 WDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLE 1321 (1338)
Q Consensus 1246 ldt~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~~i-~~~d~~ 1321 (1338)
....||||||||++||||++++|++|||||||++||+.+.+.+.+.+++ .|.|+|+|+|+++.+ .++|++
T Consensus 142 ------~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v 215 (287)
T PRK13641 142 ------SPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDV 215 (287)
T ss_pred ------CcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence 1357999999999999999999999999999999999999887776643 489999999999865 689999
Q ss_pred EEEecCC
Q 000711 1322 LRLIDGE 1328 (1338)
Q Consensus 1322 l~l~~g~ 1328 (1338)
+.|.+|+
T Consensus 216 ~~l~~G~ 222 (287)
T PRK13641 216 LVLEHGK 222 (287)
T ss_pred EEEECCE
Confidence 9997764
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=315.17 Aligned_cols=200 Identities=21% Similarity=0.258 Sum_probs=162.5
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccccCCcccEEEEcC
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 1179 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~~lr~~i~~VpQ 1179 (1338)
|+++||++.|+.. + .|+||+|++||.+||+||||||||||+++|.|+++|.+|+|.+||.++......+.+++|+||
T Consensus 2 l~~~~l~~~~~~~-~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 78 (232)
T PRK10771 2 LKLTDITWLYHHL-P--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78 (232)
T ss_pred eEEEEEEEEECCc-c--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEec
Confidence 6899999999742 2 499999999999999999999999999999999999999999999988765433457999999
Q ss_pred CCCCCCC-CHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCCCh
Q 000711 1180 RPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 1258 (1338)
Q Consensus 1180 dP~LF~G-TIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSg 1258 (1338)
+|.+|.+ |++||+.++....- ......+..+.++++.+++....++.+ ..|||
T Consensus 79 ~~~~~~~~tv~e~l~~~~~~~~----------------~~~~~~~~~~~~~l~~~~l~~~~~~~~----------~~LS~ 132 (232)
T PRK10771 79 ENNLFSHLTVAQNIGLGLNPGL----------------KLNAAQREKLHAIARQMGIEDLLARLP----------GQLSG 132 (232)
T ss_pred ccccccCCcHHHHHhccccccc----------------CCCHHHHHHHHHHHHHcCcHHHHhCCc----------ccCCH
Confidence 9999986 99999976531000 000012344667777777765444432 46999
Q ss_pred hHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCc-ccccceEEEecCC
Q 000711 1259 GEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDGE 1328 (1338)
Q Consensus 1259 GQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i-~~~d~~l~l~~g~ 1328 (1338)
|||||++||||++++|+++||||||++||.++.+.+.+.+++ .++|+|+|+|+++.+ .++|+++.|.+|+
T Consensus 133 G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 207 (232)
T PRK10771 133 GQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGR 207 (232)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999887776543 388999999999865 6789999997654
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=294.14 Aligned_cols=197 Identities=22% Similarity=0.274 Sum_probs=168.3
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc-------cccccEE
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------DLNKEIF 516 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~-------~~~~~i~ 516 (1338)
.+..+|+.++|. ++++++++||++++||++++.||||+||||.|.++.|+.+|++|+|.+++.|- .-+..||
T Consensus 4 ~L~a~~l~K~y~-kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGig 82 (243)
T COG1137 4 TLVAENLAKSYK-KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIG 82 (243)
T ss_pred EEEehhhhHhhC-CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcc
Confidence 578899999884 67899999999999999999999999999999999999999999999999871 1245699
Q ss_pred EEecCCCCCCC-CHHHHhcCCCCCCcccC--CCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHH
Q 000711 517 YVPQRPYTAVG-TLRDQLIYPLTSDQEVE--PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1338)
Q Consensus 517 ~v~Q~~~l~~~-tl~eni~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal 593 (1338)
|+||+|.+|.+ ||+|||..-........ ....+++.+.|+.+++.+..++. +.+||||||.|+.|||||
T Consensus 83 YLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~--------a~sLSGGERRR~EIARaL 154 (243)
T COG1137 83 YLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSK--------AYSLSGGERRRVEIARAL 154 (243)
T ss_pred cccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCc--------ccccccchHHHHHHHHHH
Confidence 99999999976 99999986443221111 13345677999999999988875 379999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHH---HHccCCeEEEEecCh-hhHhhcceEEEccC
Q 000711 594 YHKPKFAILDECTSAVTTDMEERFCAK---VRAMGTSCITISHRP-ALVAFHDVVLSLDG 649 (1338)
Q Consensus 594 ~~~p~illLDEpts~LD~~~~~~i~~~---l~~~~~t~i~itH~~-~~~~~~d~i~~l~~ 649 (1338)
..+|++++||||++++||.+...|++. |++.|..|++.-|+. +++.-|||.+++..
T Consensus 155 a~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~ 214 (243)
T COG1137 155 AANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISD 214 (243)
T ss_pred hcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEec
Confidence 999999999999999999988777665 556799999999986 47889999999976
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=319.26 Aligned_cols=202 Identities=21% Similarity=0.216 Sum_probs=163.7
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCC-----CccEEEeCCCCc--------c
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS--------D 510 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~-----~~G~i~~~~~~~--------~ 510 (1338)
.|+++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.+. .
T Consensus 6 ~i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 84 (253)
T PRK14261 6 ILSTKNLNLWYG-EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVA 84 (253)
T ss_pred eEEEeeeEEEEC-CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhh
Confidence 689999999996 46899999999999999999999999999999999999763 489999998641 2
Q ss_pred ccccEEEEecCCCCCCCCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHH
Q 000711 511 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1338)
Q Consensus 511 ~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlal 589 (1338)
.++.++|+||+|.++..|++||+.++....... ....++++.++++.+++.+.+... .......||||||||++|
T Consensus 85 ~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~----~~~~~~~LS~G~~qrv~l 160 (253)
T PRK14261 85 LRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDR----LHDSALSLSGGQQQRLCI 160 (253)
T ss_pred hhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHH----hhcChhhCCHHHHHHHHH
Confidence 245799999999988889999998763211100 011234567788888875432110 001236899999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhHh-hcceEEEccCC
Q 000711 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 590 ARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
|||++.+|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+. .+|++++|+++
T Consensus 161 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G 224 (253)
T PRK14261 161 ARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLG 224 (253)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECC
Confidence 9999999999999999999999999999888865 3689999999999885 79999999863
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-34 Score=322.35 Aligned_cols=202 Identities=21% Similarity=0.244 Sum_probs=163.9
Q ss_pred CcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCC-----CccEEEeCCCCc-------c
Q 000711 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS-------D 510 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~-----~~G~i~~~~~~~-------~ 510 (1338)
..++++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+. .
T Consensus 20 ~~l~i~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 20 PAMAAVNLTLGFA-GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred cEEEEeeEEEEEC-CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 4689999999996 57899999999999999999999999999999999999986 799999998541 2
Q ss_pred ccccEEEEecCCCCCCCCHHHHhcCCCCCCcc-cCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHH
Q 000711 511 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1338)
Q Consensus 511 ~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlal 589 (1338)
+++.++|+||+|.+++.|++||+.++...... ......+.+.++++.+++.+..... ......+||||||||++|
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----l~~~~~~LSgGq~qrl~L 174 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDR----LSDSPFRLSGGQQQLLCL 174 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhH----hhCCcccCCHHHHHHHHH
Confidence 35679999999998889999999875321100 0001112345678888886432110 001236899999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHcc--CCeEEEEecChhhHh-hcceEEEccC
Q 000711 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 590 ARal~~~p~illLDEpts~LD~~~~~~i~~~l~~~--~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
||||+++|+++||||||++||+.+.+.+++.+++. ++|+|++||+++.+. .+|++++|++
T Consensus 175 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~ 237 (276)
T PRK14271 175 ARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFD 237 (276)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999988653 689999999999864 7999999986
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-34 Score=330.82 Aligned_cols=198 Identities=19% Similarity=0.278 Sum_probs=162.8
Q ss_pred cEEEEeEEEEcCC---CCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCC----CCccEEEeCCCCc------c
Q 000711 444 YIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP----LVSGHIAKPGVGS------D 510 (1338)
Q Consensus 444 ~i~~~~v~~~~~~---~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~----~~~G~i~~~~~~~------~ 510 (1338)
.|+++|+++.|+. ...+++|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|.+. +
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 5899999999863 3479999999999999999999999999999999999986 5899999999641 1
Q ss_pred c----cccEEEEecCCCC---CCCCHHHHhcCCCCC---Ccc---cCCCCHHHHHHHHHHcCCch---HHhcCCCCcccc
Q 000711 511 L----NKEIFYVPQRPYT---AVGTLRDQLIYPLTS---DQE---VEPLTHGGMVELLKNVDLEY---LLDRYPPEKEIN 574 (1338)
Q Consensus 511 ~----~~~i~~v~Q~~~l---~~~tl~eni~~~~~~---~~~---~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~~~ 574 (1338)
+ ++.|+||||+|.. +..|+.+|+..+... ... ......+++.++++.++|.+ ..++.|
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p------ 156 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFP------ 156 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCc------
Confidence 1 2479999999962 346899998643110 000 00112356788999999974 345666
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 575 WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 575 ~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
.+||||||||++|||||+.+|++|||||||++||+.+...+.+.+++ .|.|+|+|||+++.+. .+|+|++|++
T Consensus 157 --~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 157 --YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred --hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 68999999999999999999999999999999999999999988764 3899999999999985 6999999986
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=322.45 Aligned_cols=217 Identities=21% Similarity=0.249 Sum_probs=164.6
Q ss_pred ceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc---CCcccEE
Q 000711 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA---GSGCGIF 1175 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~---~lr~~i~ 1175 (1338)
.|+++||++.|++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.++|.++.... ..+.+++
T Consensus 5 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (255)
T PRK11300 5 LLSVSGLMMRFGG-LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVV 83 (255)
T ss_pred eEEEeeEEEEECC-EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeE
Confidence 5899999999964 57999999999999999999999999999999999999999999999999887642 2344699
Q ss_pred EEcCCCCCCCC-CHHHHhcCCCch--HHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcc
Q 000711 1176 YVPQRPYTCLG-TLRDQIIYPLSR--EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNW 1252 (1338)
Q Consensus 1176 ~VpQdP~LF~G-TIReNL~~p~~~--~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~ 1252 (1338)
|+||+|.+|.+ |+++|+.++... ..+... ...+. .............+.++++.+++.+..++ .
T Consensus 84 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~~~~----------~ 150 (255)
T PRK11300 84 RTFQHVRLFREMTVIENLLVAQHQQLKTGLFS--GLLKT-PAFRRAESEALDRAATWLERVGLLEHANR----------Q 150 (255)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccccchhhh--hhccc-cccccchhHHHHHHHHHHHhCChhhhhhC----------C
Confidence 99999999986 999999764210 000000 00000 00000000011234556666666433322 2
Q ss_pred cCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCc-ccccceEEEecC
Q 000711 1253 EDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDG 1327 (1338)
Q Consensus 1253 g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i-~~~d~~l~l~~g 1327 (1338)
..+||||||||++||||++++|++|||||||++||.++.+.+.+.+++ .++|+|+|+|+++.+ +++|+++.|.+|
T Consensus 151 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 151 AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQG 230 (255)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 357999999999999999999999999999999999999888776542 389999999999865 679999999776
Q ss_pred CC
Q 000711 1328 EG 1329 (1338)
Q Consensus 1328 ~g 1329 (1338)
+-
T Consensus 231 ~i 232 (255)
T PRK11300 231 TP 232 (255)
T ss_pred eE
Confidence 53
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=308.07 Aligned_cols=183 Identities=28% Similarity=0.363 Sum_probs=161.4
Q ss_pred eeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC------cc----ccccEEEEecCCCC-CCCC
Q 000711 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SD----LNKEIFYVPQRPYT-AVGT 528 (1338)
Q Consensus 460 ~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~----~~~~i~~v~Q~~~l-~~~t 528 (1338)
-++|+||+|+.||+..|+|-||||||||+|++.|+++|++|+|.++|.+ .+ .++++++|+|+.-| |.-|
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt 122 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT 122 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence 4789999999999999999999999999999999999999999999986 11 24689999999865 5569
Q ss_pred HHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 000711 529 LRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608 (1338)
Q Consensus 529 l~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~illLDEpts~ 608 (1338)
|.||..||..-....+...+++..+.|+.+||+.+.+++| .+||||+|||+.|||||..+|+||++|||+||
T Consensus 123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp--------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSA 194 (386)
T COG4175 123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP--------NELSGGMQQRVGLARALANDPDILLMDEAFSA 194 (386)
T ss_pred HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc--------ccccchHHHHHHHHHHHccCCCEEEecCchhh
Confidence 9999999986544434445677889999999999999999 69999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH----ccCCeEEEEecChhh-HhhcceEEEccCC
Q 000711 609 VTTDMEERFCAKVR----AMGTSCITISHRPAL-VAFHDVVLSLDGE 650 (1338)
Q Consensus 609 LD~~~~~~i~~~l~----~~~~t~i~itH~~~~-~~~~d~i~~l~~~ 650 (1338)
|||--+.++++.|. +.++|+|+||||++. ++-.|+|..|+++
T Consensus 195 LDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG 241 (386)
T COG4175 195 LDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDG 241 (386)
T ss_pred cChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCC
Confidence 99998888887654 359999999999986 5789999999863
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=323.34 Aligned_cols=204 Identities=19% Similarity=0.234 Sum_probs=161.8
Q ss_pred ceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc-----CCccc
Q 000711 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSGCG 1173 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~-----~lr~~ 1173 (1338)
.|+++||++.|++ +++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.... ..+.+
T Consensus 7 ~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~ 85 (269)
T PRK11831 7 LVDMRGVSFTRGN-RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR 85 (269)
T ss_pred eEEEeCeEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhc
Confidence 5899999999864 57999999999999999999999999999999999999999999999999886542 13457
Q ss_pred EEEEcCCCCCCCC-CHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcc
Q 000711 1174 IFYVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNW 1252 (1338)
Q Consensus 1174 i~~VpQdP~LF~G-TIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~ 1252 (1338)
++||||+|.+|.+ |+++|+.++..... ... ....++.+.++++.+++....++.
T Consensus 86 i~~v~q~~~~~~~~tv~enl~~~~~~~~---------~~~------~~~~~~~~~~~l~~~gl~~~~~~~---------- 140 (269)
T PRK11831 86 MSMLFQSGALFTDMNVFDNVAYPLREHT---------QLP------APLLHSTVMMKLEAVGLRGAAKLM---------- 140 (269)
T ss_pred EEEEecccccCCCCCHHHHHHHHHHHcc---------CCC------HHHHHHHHHHHHHHcCChhhhhCC----------
Confidence 9999999999986 99999965311000 000 000122344566666664332221
Q ss_pred cCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCc-ccccceEEEecC
Q 000711 1253 EDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDG 1327 (1338)
Q Consensus 1253 g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i-~~~d~~l~l~~g 1327 (1338)
...||||||||++||||++++|++|||||||++||.++.+.+.+.+++ .|+|+|+|+|+++.+ +++|+++.|.+|
T Consensus 141 ~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G 220 (269)
T PRK11831 141 PSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADK 220 (269)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECC
Confidence 246999999999999999999999999999999999999887776543 389999999998754 679999999766
Q ss_pred C
Q 000711 1328 E 1328 (1338)
Q Consensus 1328 ~ 1328 (1338)
+
T Consensus 221 ~ 221 (269)
T PRK11831 221 K 221 (269)
T ss_pred E
Confidence 4
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-34 Score=318.19 Aligned_cols=204 Identities=19% Similarity=0.311 Sum_probs=162.0
Q ss_pred ceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc---CCcccEE
Q 000711 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA---GSGCGIF 1175 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~---~lr~~i~ 1175 (1338)
.|+++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.... ..+.+++
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (241)
T PRK10895 3 TLTAKNLAKAYKG-RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred eEEEeCcEEEeCC-EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence 3789999999974 57999999999999999999999999999999999999999999999999886542 2345799
Q ss_pred EEcCCCCCCCC-CHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccC
Q 000711 1176 YVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWED 1254 (1338)
Q Consensus 1176 ~VpQdP~LF~G-TIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~ 1254 (1338)
||||+|.+|.+ |++||+.++..... +. .+...+..+.++++.+++.....+ ...
T Consensus 82 ~~~q~~~~~~~~tv~enl~~~~~~~~---------~~------~~~~~~~~~~~~l~~~~l~~~~~~----------~~~ 136 (241)
T PRK10895 82 YLPQEASIFRRLSVYDNLMAVLQIRD---------DL------SAEQREDRANELMEEFHIEHLRDS----------MGQ 136 (241)
T ss_pred EeccCCcccccCcHHHHHhhhhhccc---------cc------CHHHHHHHHHHHHHHcCCHHHhhc----------chh
Confidence 99999999875 99999975321000 00 000012334556666666432221 235
Q ss_pred CCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHH---hcCCeEEEeccCCC-CcccccceEEEecCC
Q 000711 1255 ILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAK---DMGITFVTSSQRPA-LIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1255 ~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~---~~~~TvI~IAHRl~-~i~~~d~~l~l~~g~ 1328 (1338)
.||||||||++||||++++|++|||||||++||.++.+.+.+.++ ..|+|+|+++|+++ ..+++|+++.|.+|+
T Consensus 137 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~ 214 (241)
T PRK10895 137 SLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGH 214 (241)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCe
Confidence 799999999999999999999999999999999999987766553 35899999999995 667899999997654
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=305.65 Aligned_cols=186 Identities=20% Similarity=0.252 Sum_probs=158.4
Q ss_pred EEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc-cc-cccEEEEecCC
Q 000711 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-DL-NKEIFYVPQRP 522 (1338)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~-~~-~~~i~~v~Q~~ 522 (1338)
++++|+++.|++ +.+++ +||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .. ++.++|++|++
T Consensus 2 l~~~~l~~~~~~-~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (195)
T PRK13541 2 LSLHQLQFNIEQ-KNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNL 79 (195)
T ss_pred eEEEEeeEEECC-cEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCc
Confidence 789999999954 55665 9999999999999999999999999999999999999999999651 11 34589999987
Q ss_pred CC-CCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000711 523 YT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601 (1338)
Q Consensus 523 ~l-~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ill 601 (1338)
.+ +..|++||+.++.... ..++++.++++.+++++..++.+ .+||||||||++||||++++|++++
T Consensus 80 ~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~~rl~la~al~~~p~~ll 146 (195)
T PRK13541 80 GLKLEMTVFENLKFWSEIY-----NSAETLYAAIHYFKLHDLLDEKC--------YSLSSGMQKIVAIARLIACQSDLWL 146 (195)
T ss_pred CCCccCCHHHHHHHHHHhc-----ccHHHHHHHHHHcCCHhhhccCh--------hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 54 6689999998753211 13456788889999987776654 6899999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHH---ccCCeEEEEecChhhHhhcceEE
Q 000711 602 LDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALVAFHDVVL 645 (1338)
Q Consensus 602 LDEpts~LD~~~~~~i~~~l~---~~~~t~i~itH~~~~~~~~d~i~ 645 (1338)
|||||++||+.+.+.+.+.++ +.++|+|++||+++.++.+|-+.
T Consensus 147 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 147 LDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 999999999999999998875 35899999999999999888663
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=317.76 Aligned_cols=195 Identities=21% Similarity=0.306 Sum_probs=159.9
Q ss_pred CCceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccccCCcccEEE
Q 000711 1097 QDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176 (1338)
Q Consensus 1097 ~g~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~~lr~~i~~ 1176 (1338)
.+.|+++||+++ .+++|+|+||+|++||++||+|+||||||||+++|.|+++|.+|+|.++| +++|
T Consensus 37 ~~~l~i~nls~~---~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-----------~i~y 102 (282)
T cd03291 37 DNNLFFSNLCLV---GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-----------RISF 102 (282)
T ss_pred CCeEEEEEEEEe---cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-----------EEEE
Confidence 467999999996 35799999999999999999999999999999999999999999999987 3999
Q ss_pred EcCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCc-ccCC
Q 000711 1177 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLN-WEDI 1255 (1338)
Q Consensus 1177 VpQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~-~g~~ 1255 (1338)
+||+|.+|++|+++|+.++....+ ..+.++++.+++...++..+.++++.++ .+.+
T Consensus 103 v~q~~~l~~~tv~enl~~~~~~~~-----------------------~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~ 159 (282)
T cd03291 103 SSQFSWIMPGTIKENIIFGVSYDE-----------------------YRYKSVVKACQLEEDITKFPEKDNTVLGEGGIT 159 (282)
T ss_pred EeCcccccccCHHHHhhcccccCH-----------------------HHHHHHHHHhCCHHHHHhccccccceecCCCCc
Confidence 999999999999999975321111 0112223334444445555666666553 3568
Q ss_pred CChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHH-HHh--cCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1256 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRL-AKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1256 LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~-~~~--~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
||+|||||++||||++++|++|||||||++||+++.+.+.+. ++. .+.|+|+|+|+++.+..+|+++.|.+|+
T Consensus 160 LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~ 235 (282)
T cd03291 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGS 235 (282)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999998877553 322 4899999999999889999999997765
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=303.37 Aligned_cols=168 Identities=26% Similarity=0.293 Sum_probs=148.2
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc----CCcccEE
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA----GSGCGIF 1175 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~----~lr~~i~ 1175 (1338)
|+++|++++|++ +++++|+||+|++||.++|+||||||||||+++|.|+++|++|+|.++|.++.... ..+.+++
T Consensus 1 i~~~~l~~~~~~-~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 1 LELKNVSKRYGQ-KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG 79 (178)
T ss_pred CEEEEEEEEECC-eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE
Confidence 578999999865 57999999999999999999999999999999999999999999999999886542 3345799
Q ss_pred EEcCCCCCCCC-CHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccC
Q 000711 1176 YVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWED 1254 (1338)
Q Consensus 1176 ~VpQdP~LF~G-TIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~ 1254 (1338)
|+||+|.+|.+ |+++|+.+.
T Consensus 80 ~~~q~~~~~~~~t~~~~l~~~----------------------------------------------------------- 100 (178)
T cd03229 80 MVFQDFALFPHLTVLENIALG----------------------------------------------------------- 100 (178)
T ss_pred EEecCCccCCCCCHHHheeec-----------------------------------------------------------
Confidence 99999998864 999987410
Q ss_pred CCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---c-CCeEEEeccCCCCcc-cccceEEEecCC
Q 000711 1255 ILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---M-GITFVTSSQRPALIP-FHSLELRLIDGE 1328 (1338)
Q Consensus 1255 ~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~-~~TvI~IAHRl~~i~-~~d~~l~l~~g~ 1328 (1338)
||+|||||++||||++++|+++||||||++||.++.+.+.+.+++ . ++|+|+|+|++..+. ++|+++.|.+|+
T Consensus 101 -lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 101 -LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred -CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 599999999999999999999999999999999999888776543 3 799999999998776 799999997663
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=321.13 Aligned_cols=206 Identities=24% Similarity=0.299 Sum_probs=163.7
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEEEE
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYV 1177 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~~V 1177 (1338)
|+++||++.|++ +++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.++|.++... ...++.++|+
T Consensus 3 l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (255)
T PRK11231 3 LRTENLTVGYGT-KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALL 81 (255)
T ss_pred EEEEeEEEEECC-EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEe
Confidence 789999999974 5799999999999999999999999999999999999999999999999988654 2334579999
Q ss_pred cCCCCCCCC-CHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCC
Q 000711 1178 PQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDIL 1256 (1338)
Q Consensus 1178 pQdP~LF~G-TIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~L 1256 (1338)
||+|.+|.+ |+++|+.++...... ..+. .....+..+.++++.+++....+.. ...|
T Consensus 82 ~q~~~~~~~~tv~~~i~~~~~~~~~------~~~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~L 139 (255)
T PRK11231 82 PQHHLTPEGITVRELVAYGRSPWLS------LWGR------LSAEDNARVNQAMEQTRINHLADRR----------LTDL 139 (255)
T ss_pred cccCCCCCCccHHHHHHhccchhhh------hccC------CCHHHHHHHHHHHHHcCCHHHHcCC----------cccC
Confidence 999999877 999999764211000 0000 0001123455666666664433221 3579
Q ss_pred ChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCCCc-ccccceEEEecCC
Q 000711 1257 SLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLELRLIDGE 1328 (1338)
Q Consensus 1257 SgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~~i-~~~d~~l~l~~g~ 1328 (1338)
|||||||++||||++++|++|||||||++||.++.+.+.+.+++ .++|+|+|+|+++.+ +++|+++.|.+|.
T Consensus 140 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~ 215 (255)
T PRK11231 140 SGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGH 215 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCe
Confidence 99999999999999999999999999999999999888776643 489999999999865 6899999997665
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=317.37 Aligned_cols=185 Identities=25% Similarity=0.311 Sum_probs=152.8
Q ss_pred CCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC-----ccccccEEEEe-cCCCCC-CCCH
Q 000711 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP-QRPYTA-VGTL 529 (1338)
Q Consensus 457 ~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~-----~~~~~~i~~v~-Q~~~l~-~~tl 529 (1338)
++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...+++++|++ |++.++ ..|+
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcH
Confidence 4679999999999999999999999999999999999999999999999864 12356799998 556665 5699
Q ss_pred HHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCC
Q 000711 530 RDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609 (1338)
Q Consensus 530 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~illLDEpts~L 609 (1338)
+||+.+.............+++.++++.+++.+..++.+ ..||||||||++||||++.+|+++||||||++|
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 184 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPV--------RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGL 184 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 999976432110000112335667888889887766654 689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHc----cCCeEEEEecChhhH-hhcceEEEccC
Q 000711 610 TTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1338)
Q Consensus 610 D~~~~~~i~~~l~~----~~~t~i~itH~~~~~-~~~d~i~~l~~ 649 (1338)
|+.+.+.+.+.+++ .++|+|++||+++.+ ..+|++++|++
T Consensus 185 D~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~ 229 (236)
T cd03267 185 DVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDK 229 (236)
T ss_pred CHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeC
Confidence 99999999998764 278999999999986 46999999976
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=318.22 Aligned_cols=199 Identities=20% Similarity=0.245 Sum_probs=159.1
Q ss_pred ceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc---CCcccEE
Q 000711 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA---GSGCGIF 1175 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~---~lr~~i~ 1175 (1338)
-|+++||++.|++ +++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.++|.++.... ..+.+++
T Consensus 5 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (237)
T PRK11614 5 MLSFDKVSAHYGK-IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA 83 (237)
T ss_pred EEEEEeEEEeeCC-ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE
Confidence 4899999999864 57999999999999999999999999999999999999999999999999887653 2355799
Q ss_pred EEcCCCCCCCC-CHHHHhcCCCc--hHHHHHHHHhhhcCCccccccccCchHHHHHHHhhC-CchhhhhhhcccCcccCc
Q 000711 1176 YVPQRPYTCLG-TLRDQIIYPLS--REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGV-RLSYLLEREEVGWDANLN 1251 (1338)
Q Consensus 1176 ~VpQdP~LF~G-TIReNL~~p~~--~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~-~L~~~i~~~~~Gldt~~~ 1251 (1338)
|+||+|.+|.+ |+++|+.++.. ..++ .+..+.++++.+ ++.+.. + .
T Consensus 84 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~--------------------~~~~~~~~l~~~~~l~~~~-------~---~ 133 (237)
T PRK11614 84 IVPEGRRVFSRMTVEENLAMGGFFAERDQ--------------------FQERIKWVYELFPRLHERR-------I---Q 133 (237)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccChhH--------------------HHHHHHHHHHHHHHHHHHH-------h---C
Confidence 99999999985 99999976321 1110 011222333332 121111 1 1
Q ss_pred ccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCC-CcccccceEEEecC
Q 000711 1252 WEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPA-LIPFHSLELRLIDG 1327 (1338)
Q Consensus 1252 ~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~-~i~~~d~~l~l~~g 1327 (1338)
....||||||||++||||++++|+|+||||||++||.++.+.+.+.+++ .|+|+|+++|+++ ..+++|+++.|.+|
T Consensus 134 ~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 213 (237)
T PRK11614 134 RAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENG 213 (237)
T ss_pred chhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCC
Confidence 2357999999999999999999999999999999999999888776543 4899999999997 66889999999766
Q ss_pred C
Q 000711 1328 E 1328 (1338)
Q Consensus 1328 ~ 1328 (1338)
+
T Consensus 214 ~ 214 (237)
T PRK11614 214 H 214 (237)
T ss_pred E
Confidence 4
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=320.30 Aligned_cols=209 Identities=23% Similarity=0.224 Sum_probs=163.2
Q ss_pred ceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCC-----CCceEEcCCCCCccc--cCCc
Q 000711 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPV-----VSGSLTKPSQHIDEE--AGSG 1171 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~-----~sG~I~idg~dI~~~--~~lr 1171 (1338)
.|+++||++.|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++| .+|+|.+||.++... ...+
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 81 (250)
T PRK14247 3 KIEIRDLKVSFGQ-VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELR 81 (250)
T ss_pred eEEEEeeEEEECC-eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHh
Confidence 4899999999965 5699999999999999999999999999999999999974 699999999988754 2345
Q ss_pred ccEEEEcCCCCCC-CCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC
Q 000711 1172 CGIFYVPQRPYTC-LGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 1250 (1338)
Q Consensus 1172 ~~i~~VpQdP~LF-~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~ 1250 (1338)
.+++||||+|.+| ..|++||+.++.... +.. ......++.+.++++.+++...++ ..+|..
T Consensus 82 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~----------~~~----~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~~- 143 (250)
T PRK14247 82 RRVQMVFQIPNPIPNLSIFENVALGLKLN----------RLV----KSKKELQERVRWALEKAQLWDEVK---DRLDAP- 143 (250)
T ss_pred ccEEEEeccCccCCCCcHHHHHHHHHHhc----------ccc----CCHHHHHHHHHHHHHHcCCCcchh---hhhcCC-
Confidence 6799999999765 679999997532100 000 000001234556677776633221 112222
Q ss_pred cccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCc-ccccceEEEecC
Q 000711 1251 NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALI-PFHSLELRLIDG 1327 (1338)
Q Consensus 1251 ~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i-~~~d~~l~l~~g 1327 (1338)
..+||||||||++||||++++|+++||||||++||.++.+.+.+.+++ .++|+|+|+|+++.+ +++|+++.|.+|
T Consensus 144 --~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 221 (250)
T PRK14247 144 --AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKG 221 (250)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 347999999999999999999999999999999999999888777654 479999999999866 689999999766
Q ss_pred C
Q 000711 1328 E 1328 (1338)
Q Consensus 1328 ~ 1328 (1338)
+
T Consensus 222 ~ 222 (250)
T PRK14247 222 Q 222 (250)
T ss_pred e
Confidence 5
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=323.47 Aligned_cols=205 Identities=20% Similarity=0.191 Sum_probs=160.4
Q ss_pred CceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCC-----CCCceEEcCCCCCccc----c
Q 000711 1098 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP-----VVSGSLTKPSQHIDEE----A 1168 (1338)
Q Consensus 1098 g~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~-----~~sG~I~idg~dI~~~----~ 1168 (1338)
..|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++ |++|+|.++|.++... .
T Consensus 12 ~~l~i~nl~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~ 90 (269)
T PRK14259 12 IIISLQNVTISYGT-FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPV 90 (269)
T ss_pred ceEEEEeEEEEECC-EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHH
Confidence 46999999999965 569999999999999999999999999999999999997 5899999999987531 2
Q ss_pred CCcccEEEEcCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcc
Q 000711 1169 GSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDA 1248 (1338)
Q Consensus 1169 ~lr~~i~~VpQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt 1248 (1338)
..|.+++||||+|.+|..|++||+.++.... + .....++.+.++++.+++...++. -++.
T Consensus 91 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~----------~-------~~~~~~~~~~~~l~~~~l~~~l~~---~~~~ 150 (269)
T PRK14259 91 EVRRRIGMVFQQPNPFPKSIYENIAFGARIN----------G-------YTGDMDELVERSLRKAAVWDECKD---KLNE 150 (269)
T ss_pred HHhhceEEEccCCccchhhHHHHHhhhhhhc----------C-------CcHHHHHHHHHHHHHhCCcchhhh---hhCC
Confidence 2345799999999999999999997542100 0 000012233444555544211110 0111
Q ss_pred cCcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCC-CcccccceEEEe
Q 000711 1249 NLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPA-LIPFHSLELRLI 1325 (1338)
Q Consensus 1249 ~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~-~i~~~d~~l~l~ 1325 (1338)
....||+|||||++||||++++|++|||||||++||.++.+.+.+++++ .++|+|+|+|+++ ..+++|++++|.
T Consensus 151 ---~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~ 227 (269)
T PRK14259 151 ---SGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFN 227 (269)
T ss_pred ---CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEe
Confidence 2357999999999999999999999999999999999999988877654 3789999999997 457899999997
Q ss_pred c
Q 000711 1326 D 1326 (1338)
Q Consensus 1326 ~ 1326 (1338)
+
T Consensus 228 ~ 228 (269)
T PRK14259 228 A 228 (269)
T ss_pred c
Confidence 6
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=318.48 Aligned_cols=199 Identities=21% Similarity=0.235 Sum_probs=165.0
Q ss_pred CCcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCC-----CccEEEeCCCCc-------
Q 000711 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS------- 509 (1338)
Q Consensus 442 ~~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~-----~~G~i~~~~~~~------- 509 (1338)
.+.|+++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.+.
T Consensus 14 ~~~l~~~~l~~~~~~-~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~ 92 (265)
T PRK14252 14 QQKSEVNKLNFYYGG-YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEV 92 (265)
T ss_pred CceEEEEEEEEEECC-eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccccc
Confidence 467999999999964 5899999999999999999999999999999999999875 799999987531
Q ss_pred ---cccccEEEEecCCCCCCCCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCCch----HHhcCCCCccccCCCCCCh
Q 000711 510 ---DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSL 581 (1338)
Q Consensus 510 ---~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~g~~LSg 581 (1338)
.+++.++|+||++.++.+|++||+.++....... ....++++.++++.+++.+ ..++. ...|||
T Consensus 93 ~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LS~ 164 (265)
T PRK14252 93 DPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDL--------AFNLSG 164 (265)
T ss_pred CHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCC--------cccCCH
Confidence 2356799999999998889999998753211000 0112356778888888753 22232 368999
Q ss_pred hHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 582 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 582 GqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+++ .++|+|+|||+++.+. .||++++|++
T Consensus 165 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~ 235 (265)
T PRK14252 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYM 235 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999998865 3689999999999874 7999999986
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=324.01 Aligned_cols=202 Identities=20% Similarity=0.225 Sum_probs=160.3
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc----cCCcccEE
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE----AGSGCGIF 1175 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~----~~lr~~i~ 1175 (1338)
|+++||++.|++ +++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++... ...|.+++
T Consensus 2 l~~~~l~~~~~~-~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 2 LATSDLWFRYQD-EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred eEEEEEEEEcCC-cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 689999999964 5799999999999999999999999999999999999999999999999988521 12345799
Q ss_pred EEcCCCC--CCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCccc
Q 000711 1176 YVPQRPY--TCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 1253 (1338)
Q Consensus 1176 ~VpQdP~--LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g 1253 (1338)
||||+|. +|..|+.+|+.++... .+.. .......+.++++.+++.++.++ ..
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~----------~~~~------~~~~~~~~~~~l~~~~l~~~~~~----------~~ 134 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRN----------LGVP------EAEITRRVDEALTLVDAQHFRHQ----------PI 134 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHH----------cCCC------HHHHHHHHHHHHHHcCCHhHhcC----------Cc
Confidence 9999986 5778899998653100 0000 00011234456666666433222 13
Q ss_pred CCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCCCc-ccccceEEEecCC
Q 000711 1254 DILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLELRLIDGE 1328 (1338)
Q Consensus 1254 ~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~~i-~~~d~~l~l~~g~ 1328 (1338)
..||||||||++||||++++|++|||||||++||.++.+.+.+.+++ .|+|+|+|+|+++.+ +++|+++.|.+|+
T Consensus 135 ~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~ 213 (271)
T PRK13638 135 QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQ 213 (271)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 47999999999999999999999999999999999999888776543 489999999999866 6799999997664
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=324.42 Aligned_cols=204 Identities=22% Similarity=0.309 Sum_probs=163.0
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc----cCCcccEE
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE----AGSGCGIF 1175 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~----~~lr~~i~ 1175 (1338)
|+++||+++|++.+++|+|+||+|++||.+||+||||||||||+++|.|+++|.+|+|.++|.++... ...+.+|+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 81 (275)
T PRK13639 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVG 81 (275)
T ss_pred EEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheE
Confidence 68999999997656799999999999999999999999999999999999999999999999988522 12355799
Q ss_pred EEcCCC--CCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCccc
Q 000711 1176 YVPQRP--YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 1253 (1338)
Q Consensus 1176 ~VpQdP--~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g 1253 (1338)
||||+| .+|..|++||+.++... .+.. .....+.+.++++.++|..+.++. .
T Consensus 82 ~v~q~~~~~~~~~tv~e~i~~~~~~----------~~~~------~~~~~~~~~~~l~~~~L~~~~~~~----------~ 135 (275)
T PRK13639 82 IVFQNPDDQLFAPTVEEDVAFGPLN----------LGLS------KEEVEKRVKEALKAVGMEGFENKP----------P 135 (275)
T ss_pred EEeeChhhhhccccHHHHHHHHHHH----------cCCC------HHHHHHHHHHHHHHCCCchhhcCC----------h
Confidence 999998 57889999999753100 0000 000122345666777764332221 3
Q ss_pred CCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCCCc-ccccceEEEecCCC
Q 000711 1254 DILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLELRLIDGEG 1329 (1338)
Q Consensus 1254 ~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~~i-~~~d~~l~l~~g~g 1329 (1338)
..||||||||++||||++++|+++||||||++||..+...+.+.+++ .++|+|+|+|+++.+ +++|+++.|.+|+-
T Consensus 136 ~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i 215 (275)
T PRK13639 136 HHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKI 215 (275)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 47999999999999999999999999999999999999888776543 489999999999865 58999999977653
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=316.11 Aligned_cols=202 Identities=19% Similarity=0.264 Sum_probs=159.3
Q ss_pred eEEeeeEEeCCCc---cccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCC---CCCceEEcCCCCCccccCCccc
Q 000711 1100 ISFSKLDIITPSQ---KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP---VVSGSLTKPSQHIDEEAGSGCG 1173 (1338)
Q Consensus 1100 I~f~nV~f~yp~~---~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~---~~sG~I~idg~dI~~~~~lr~~ 1173 (1338)
++|+||+++||+. +++|+|+||+|++||.++|+||||||||||+++|.|+++ |++|+|.++|.++... ..+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~-~~~~~ 82 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPD-QFQKC 82 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChH-Hhccc
Confidence 5799999999875 789999999999999999999999999999999999999 9999999999988643 34557
Q ss_pred EEEEcCCCCCCCC-CHHHHhcCCCchH--HHHHHHHhhhcCCccccccccCchHHHHH-HHhhCCchhhhhhhcccCccc
Q 000711 1174 IFYVPQRPYTCLG-TLRDQIIYPLSRE--EAELRALKLHGKGEKLVDTTNILDSYLKT-ILEGVRLSYLLEREEVGWDAN 1249 (1338)
Q Consensus 1174 i~~VpQdP~LF~G-TIReNL~~p~~~~--~~~~~a~~~a~~~~~~~~~~~~~d~~i~~-~l~~~~L~~~i~~~~~Gldt~ 1249 (1338)
++|+||+|.+|.+ |++||+.++.... ....++ ..+..+.+ .++.+++....++
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~---------------~~~~~~~~~~l~~~~l~~~~~~-------- 139 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDA---------------IRKKRVEDVLLRDLALTRIGGN-------- 139 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchH---------------HHHHHHHHHHHHhhcchhhhcc--------
Confidence 9999999999987 9999997531100 000000 00111222 4444444322211
Q ss_pred CcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCC--CCcccccceEEE
Q 000711 1250 LNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRP--ALIPFHSLELRL 1324 (1338)
Q Consensus 1250 ~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl--~~i~~~d~~l~l 1324 (1338)
....||+|||||++||||++++|+++||||||++||..+...+.+.+++ .+.|+|+++|++ ...+++|+++.|
T Consensus 140 --~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l 217 (226)
T cd03234 140 --LVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLL 217 (226)
T ss_pred --cccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEE
Confidence 2357999999999999999999999999999999999999888776643 488999999998 467899999999
Q ss_pred ecC
Q 000711 1325 IDG 1327 (1338)
Q Consensus 1325 ~~g 1327 (1338)
.+|
T Consensus 218 ~~G 220 (226)
T cd03234 218 SSG 220 (226)
T ss_pred eCC
Confidence 765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=330.17 Aligned_cols=207 Identities=23% Similarity=0.305 Sum_probs=162.3
Q ss_pred CceEEeeeEEeCCC------------ccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCc
Q 000711 1098 DSISFSKLDIITPS------------QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHID 1165 (1338)
Q Consensus 1098 g~I~f~nV~f~yp~------------~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~ 1165 (1338)
.-++++|++++|+. ..++++|+||+|++||.+||||+||||||||+++|+|+++|++|+|.+||.++.
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 35899999998863 246999999999999999999999999999999999999999999999999987
Q ss_pred ccc-----CCcccEEEEcCCC--CCC-CCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchh
Q 000711 1166 EEA-----GSGCGIFYVPQRP--YTC-LGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSY 1237 (1338)
Q Consensus 1166 ~~~-----~lr~~i~~VpQdP--~LF-~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~ 1237 (1338)
... ..|.+|+||||+| .|| ..|+++||.++... ... . . ..+..++.+.++++.++|..
T Consensus 87 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~----------~~~-~-~--~~~~~~~~~~~~l~~vgl~~ 152 (331)
T PRK15079 87 GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRT----------YHP-K-L--SRQEVKDRVKAMMLKVGLLP 152 (331)
T ss_pred cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHH----------hcc-C-C--CHHHHHHHHHHHHHHcCCCh
Confidence 652 2345799999999 477 47999998643110 000 0 0 00001233456677777631
Q ss_pred -hhhhhcccCcccCcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCC
Q 000711 1238 -LLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRP 1312 (1338)
Q Consensus 1238 -~i~~~~~Gldt~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl 1312 (1338)
..++ ...+||||||||++|||||+++|++||+|||||+||..+...+.+++++ .+.|+|+|+|++
T Consensus 153 ~~~~~----------~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl 222 (331)
T PRK15079 153 NLINR----------YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDL 222 (331)
T ss_pred HHhcC----------CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 2222 2357999999999999999999999999999999999999887766532 489999999999
Q ss_pred CCcc-cccceEEEecCC
Q 000711 1313 ALIP-FHSLELRLIDGE 1328 (1338)
Q Consensus 1313 ~~i~-~~d~~l~l~~g~ 1328 (1338)
+.+. ++|++++|.+|+
T Consensus 223 ~~~~~~~dri~vl~~G~ 239 (331)
T PRK15079 223 AVVKHISDRVLVMYLGH 239 (331)
T ss_pred HHHHHhCCEEEEEECCE
Confidence 8774 799999997653
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=315.09 Aligned_cols=182 Identities=21% Similarity=0.289 Sum_probs=151.9
Q ss_pred eeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC-ccccccEEEEecCCCCCC-CCHHHHhcCCCC
Q 000711 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQRPYTAV-GTLRDQLIYPLT 538 (1338)
Q Consensus 461 l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~-~~~~~~i~~v~Q~~~l~~-~tl~eni~~~~~ 538 (1338)
++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .......+|+||++.++. .|++||+.++..
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999864 122234689999998876 699999987521
Q ss_pred C--CcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHH
Q 000711 539 S--DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 616 (1338)
Q Consensus 539 ~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~ 616 (1338)
. .........+++.++++.+++.+..++.+ .+||||||||++|||||+++|+++||||||++||+.+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~ 152 (230)
T TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEAADKRP--------GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGN 152 (230)
T ss_pred hcccCCCHHHHHHHHHHHHHHcCCHHHHcCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHH
Confidence 0 00000112345778899999988777755 6899999999999999999999999999999999999999
Q ss_pred HHHHHHc----cCCeEEEEecChhhH-hhcceEEEccCC
Q 000711 617 FCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1338)
Q Consensus 617 i~~~l~~----~~~t~i~itH~~~~~-~~~d~i~~l~~~ 650 (1338)
+.+.+++ .|+|+|++||+++.+ ..+|++++|+++
T Consensus 153 l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G 191 (230)
T TIGR01184 153 LQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191 (230)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCC
Confidence 9988764 388999999999976 479999999863
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=317.18 Aligned_cols=195 Identities=24% Similarity=0.314 Sum_probs=161.7
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCC----CccEEEeCCCCc---c-ccccE
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL----VSGHIAKPGVGS---D-LNKEI 515 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~----~~G~i~~~~~~~---~-~~~~i 515 (1338)
.++++||++.| ++++|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.+. . .++.+
T Consensus 4 ~l~~~~l~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i 81 (254)
T PRK10418 4 QIELRNIALQA--AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKI 81 (254)
T ss_pred EEEEeCeEEEe--ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceE
Confidence 58999999998 46899999999999999999999999999999999999999 999999998651 1 23579
Q ss_pred EEEecCCC-CC--CCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCch---HHhcCCCCccccCCCCCChhHHHHHHH
Q 000711 516 FYVPQRPY-TA--VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY---LLDRYPPEKEINWGDELSLGEQQRLGM 589 (1338)
Q Consensus 516 ~~v~Q~~~-l~--~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~~~~g~~LSgGqkQRlal 589 (1338)
+|+||+|. .+ ..|+.+|+.+...... ....++++.++++.+++.+ ..++.+ .+||||||||++|
T Consensus 82 ~~v~q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~LS~Gq~qrv~l 151 (254)
T PRK10418 82 ATIMQNPRSAFNPLHTMHTHARETCLALG--KPADDATLTAALEAVGLENAARVLKLYP--------FEMSGGMLQRMMI 151 (254)
T ss_pred EEEecCCccccCccccHHHHHHHHHHHcC--CChHHHHHHHHHHHcCCCChhhhhhcCC--------cccCHHHHHHHHH
Confidence 99999984 23 3588888754211100 0123467888999999976 344433 6899999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHh-hcceEEEccCC
Q 000711 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 590 ARal~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
||||+.+|+++||||||++||+.+.+.+++.+++ .|+|+|++||+++.+. .+|++++|+++
T Consensus 152 aral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G 217 (254)
T PRK10418 152 ALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHG 217 (254)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999888764 3799999999999874 79999999863
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=324.34 Aligned_cols=205 Identities=22% Similarity=0.309 Sum_probs=166.6
Q ss_pred CceEEeeeEEeCCC-ccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCC---ceEEcCCCCCcccc--CCc
Q 000711 1098 DSISFSKLDIITPS-QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVS---GSLTKPSQHIDEEA--GSG 1171 (1338)
Q Consensus 1098 g~I~f~nV~f~yp~-~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~s---G~I~idg~dI~~~~--~lr 1171 (1338)
+.|+++|+++.|++ ..++|+|+||+|++||.+||+||||||||||+++|.|+++|++ |+|.++|.++.... ..+
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 46999999999975 4579999999999999999999999999999999999999987 89999999887542 234
Q ss_pred ccEEEEcCCC--CCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCccc
Q 000711 1172 CGIFYVPQRP--YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDAN 1249 (1338)
Q Consensus 1172 ~~i~~VpQdP--~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~ 1249 (1338)
.+++||||+| .++..|++|||.++... .+. .....++.+.++++.++|....++.
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~----------~~~------~~~~~~~~~~~~l~~~~L~~~~~~~------- 140 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLEN----------RAV------PRPEMIKIVRDVLADVGMLDYIDSE------- 140 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHh----------CCC------CHHHHHHHHHHHHHHCCChhHhcCC-------
Confidence 5799999999 46688999999753110 000 0000123455677777775544333
Q ss_pred CcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCcccccceEEEe
Q 000711 1250 LNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALIPFHSLELRLI 1325 (1338)
Q Consensus 1250 ~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i~~~d~~l~l~ 1325 (1338)
..+||||||||++||||++++|++|||||||++||..+.+.+.+.+++ .|+|||+|+|+++.+..+|++++|.
T Consensus 141 ---~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~ 217 (282)
T PRK13640 141 ---PANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLD 217 (282)
T ss_pred ---cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEE
Confidence 257999999999999999999999999999999999999887776543 3899999999999888999999997
Q ss_pred cCC
Q 000711 1326 DGE 1328 (1338)
Q Consensus 1326 ~g~ 1328 (1338)
+|.
T Consensus 218 ~G~ 220 (282)
T PRK13640 218 DGK 220 (282)
T ss_pred CCE
Confidence 765
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-34 Score=308.71 Aligned_cols=195 Identities=24% Similarity=0.307 Sum_probs=158.1
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc-cCCcccEEEEc
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-AGSGCGIFYVP 1178 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~-~~lr~~i~~Vp 1178 (1338)
|+++|+++.|++ +++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++... ...+++++++|
T Consensus 2 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~ 80 (204)
T PRK13538 2 LEARNLACERDE-RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLG 80 (204)
T ss_pred eEEEEEEEEECC-EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeC
Confidence 689999998865 5699999999999999999999999999999999999999999999999988654 23345799999
Q ss_pred CCCCCCC-CCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCCC
Q 000711 1179 QRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 1257 (1338)
Q Consensus 1179 QdP~LF~-GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LS 1257 (1338)
|+|.++. .|++||+.++... .+ ...++.+.++++.+++....++. ...||
T Consensus 81 ~~~~~~~~~tv~e~l~~~~~~----------~~---------~~~~~~~~~~l~~~gl~~~~~~~----------~~~LS 131 (204)
T PRK13538 81 HQPGIKTELTALENLRFYQRL----------HG---------PGDDEALWEALAQVGLAGFEDVP----------VRQLS 131 (204)
T ss_pred CccccCcCCcHHHHHHHHHHh----------cC---------ccHHHHHHHHHHHcCCHHHhhCC----------hhhcC
Confidence 9998876 6999999653210 00 01134456677777775433221 34699
Q ss_pred hhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCCCc-ccccceEEE
Q 000711 1258 LGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLELRL 1324 (1338)
Q Consensus 1258 gGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~~i-~~~d~~l~l 1324 (1338)
||||||++||||++++|+++||||||++||+++.+.+.+++++ .+.|+|+|+|+++.+ .+.++++.+
T Consensus 132 ~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 132 AGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 9999999999999999999999999999999999988877653 489999999999877 555555555
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=320.90 Aligned_cols=208 Identities=23% Similarity=0.258 Sum_probs=162.6
Q ss_pred CceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCC-----CCceEEcCCCCCccc----c
Q 000711 1098 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPV-----VSGSLTKPSQHIDEE----A 1168 (1338)
Q Consensus 1098 g~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~-----~sG~I~idg~dI~~~----~ 1168 (1338)
..|+++||++.|++ +++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++... .
T Consensus 11 ~~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 11 PQIKVENLNLWYGE-KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred eeEEEeeeEEEeCC-eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 46999999999964 5699999999999999999999999999999999999985 799999999988542 1
Q ss_pred CCcccEEEEcCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcc
Q 000711 1169 GSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDA 1248 (1338)
Q Consensus 1169 ~lr~~i~~VpQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt 1248 (1338)
..+.+++||||+|.+|..|+++|+.++.. ..+.. .+..+..+.++++.+++...+. ..+++
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~----------~~~~~------~~~~~~~~~~~l~~~~l~~~~~---~~~~~ 150 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPR----------IHGAN------KKDLDGVVENALRSAALWDETS---DRLKS 150 (258)
T ss_pred HHhhhEEEEecCCccCcccHHHHHHHHHH----------HcCCC------HHHHHHHHHHHHHHcCCCcchh---hhhcC
Confidence 23557999999999999999999964310 00000 0001223455666665532110 11222
Q ss_pred cCcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCc-ccccceEEEe
Q 000711 1249 NLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALI-PFHSLELRLI 1325 (1338)
Q Consensus 1249 ~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i-~~~d~~l~l~ 1325 (1338)
. ...||||||||++||||++++|+++||||||++||.++.+.+.+.+++ .++|+|+|+|+++.+ +++|++++|.
T Consensus 151 ~---~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~ 227 (258)
T PRK14268 151 P---ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFL 227 (258)
T ss_pred C---hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEE
Confidence 2 357999999999999999999999999999999999999988877654 379999999999865 7799999997
Q ss_pred cCC
Q 000711 1326 DGE 1328 (1338)
Q Consensus 1326 ~g~ 1328 (1338)
+|+
T Consensus 228 ~G~ 230 (258)
T PRK14268 228 MGE 230 (258)
T ss_pred CCE
Confidence 664
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=318.89 Aligned_cols=202 Identities=20% Similarity=0.241 Sum_probs=164.5
Q ss_pred CcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCC-----ccEEEeCCCCc--------
Q 000711 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV-----SGHIAKPGVGS-------- 509 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~-----~G~i~~~~~~~-------- 509 (1338)
+.++++||++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+.
T Consensus 6 ~~l~~~nl~~~~~~-~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 6 PAIKVNNLSFYYDT-QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred ceEEEeeEEEEeCC-eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence 46999999999953 57999999999999999999999999999999999999985 89999988541
Q ss_pred cccccEEEEecCCCCCCCCHHHHhcCCCCCCcc-cCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHH
Q 000711 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1338)
Q Consensus 510 ~~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRla 588 (1338)
.+++.++|+||++.++..|++||+.++...... .....++++.++++.+++.+.+.... .....+||||||||++
T Consensus 85 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----~~~~~~LSgGq~qrv~ 160 (261)
T PRK14258 85 RLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKI----HKSALDLSGGQQQRLC 160 (261)
T ss_pred HhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHh----cCCcccCCHHHHHHHH
Confidence 235679999999988889999999864211100 00011345678888998865332110 0113689999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 589 lARal~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
||||++++|+++||||||++||+.+...+++.+++ .++|+|+|||+++.+. .||++++|++
T Consensus 161 laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~ 226 (261)
T PRK14258 161 IARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKG 226 (261)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEcc
Confidence 99999999999999999999999999999988764 3899999999999875 7999999986
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=321.59 Aligned_cols=205 Identities=20% Similarity=0.248 Sum_probs=160.7
Q ss_pred ceEEeeeEEeCCC--------ccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc--
Q 000711 1099 SISFSKLDIITPS--------QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-- 1168 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~--------~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~-- 1168 (1338)
-|+++||++.|++ .+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 3789999999863 367999999999999999999999999999999999999999999999999887652
Q ss_pred ---CCcccEEEEcCCCC--CC-CCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCch-hhhhh
Q 000711 1169 ---GSGCGIFYVPQRPY--TC-LGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS-YLLER 1241 (1338)
Q Consensus 1169 ---~lr~~i~~VpQdP~--LF-~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~-~~i~~ 1241 (1338)
..+.+|+||||+|. ++ ..|+++||.++.... .+. .....+..+.++++.+++. ...+.
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~---------~~~------~~~~~~~~~~~~l~~~gl~~~~~~~ 146 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL---------TSL------DESEQKARIAELLDMVGLRSEDADK 146 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh---------cCC------CHHHHHHHHHHHHHHcCCChhhhhC
Confidence 13457999999983 44 479999986431100 000 0001123455666766663 22111
Q ss_pred hcccCcccCcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCcc-
Q 000711 1242 EEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALIP- 1316 (1338)
Q Consensus 1242 ~~~Gldt~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i~- 1316 (1338)
....||||||||++||||++++|++|||||||++||.++.+.+.+.+++ .|+|+|+|+|+++.+.
T Consensus 147 ----------~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~ 216 (265)
T TIGR02769 147 ----------LPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQS 216 (265)
T ss_pred ----------ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHH
Confidence 2357999999999999999999999999999999999998877766543 3899999999998774
Q ss_pred cccceEEEecCC
Q 000711 1317 FHSLELRLIDGE 1328 (1338)
Q Consensus 1317 ~~d~~l~l~~g~ 1328 (1338)
++|+++.|.+|+
T Consensus 217 ~~d~i~~l~~G~ 228 (265)
T TIGR02769 217 FCQRVAVMDKGQ 228 (265)
T ss_pred HhcEEEEEeCCE
Confidence 799999997654
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=316.53 Aligned_cols=199 Identities=21% Similarity=0.191 Sum_probs=165.5
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCC-----CccEEEeCCCCc--------c
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS--------D 510 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~-----~~G~i~~~~~~~--------~ 510 (1338)
.+.+++++++|. +.++++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.+. .
T Consensus 8 ~~~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~ 86 (261)
T PRK14263 8 VMDCKLDKIFYG-NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVV 86 (261)
T ss_pred eEEEEeEEEEeC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHh
Confidence 578999999884 46899999999999999999999999999999999999986 799999998641 2
Q ss_pred ccccEEEEecCCCCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHH
Q 000711 511 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1338)
Q Consensus 511 ~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalA 590 (1338)
+++.++|+||+++++..|+.||+.++...... .....+++.++++.+++.+.+.... .....+||||||||++||
T Consensus 87 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~i~~~~----~~~~~~LS~G~~qrv~la 161 (261)
T PRK14263 87 VRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRY-KGDLGDRVKHALQGAALWDEVKDKL----KVSGLSLSGGQQQRLCIA 161 (261)
T ss_pred hhhceEEEecCCccccccHHHHHHHHHhhcCc-hHHHHHHHHHHHHHcCCchhhhhhh----hCCcccCCHHHHHHHHHH
Confidence 34679999999999989999999876422110 1112356788999999865443211 012368999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhH-hhcceEEEcc
Q 000711 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLD 648 (1338)
Q Consensus 591 Ral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~-~~~d~i~~l~ 648 (1338)
|||+++|+++||||||++||+.+...+++.+++ .++|+|++||+++.+ ..+|++++|+
T Consensus 162 ral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~ 222 (261)
T PRK14263 162 RAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFS 222 (261)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEe
Confidence 999999999999999999999999999998875 378999999999976 5799999996
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=321.19 Aligned_cols=204 Identities=22% Similarity=0.270 Sum_probs=162.9
Q ss_pred ceEEeeeEEeCCCc-cccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc--CCcccEE
Q 000711 1099 SISFSKLDIITPSQ-KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIF 1175 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~-~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~--~lr~~i~ 1175 (1338)
.|+++||++.|++. +++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++.... ..+++++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 58999999999764 56999999999999999999999999999999999999999999999999886542 3355799
Q ss_pred EEcCCCC--CCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCccc
Q 000711 1176 YVPQRPY--TCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 1253 (1338)
Q Consensus 1176 ~VpQdP~--LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g 1253 (1338)
||||+|. ++..|+++|+.++.... +. ..+..++.+.++++.+++....+. ..
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~----------~~------~~~~~~~~~~~~l~~~~l~~~~~~----------~~ 140 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENH----------AV------PYDEMHRRVSEALKQVDMLERADY----------EP 140 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhc----------CC------CHHHHHHHHHHHHHHcCCchhhhC----------Cc
Confidence 9999994 44568999987542100 00 000012334556666666433322 23
Q ss_pred CCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCCcccccceEEEecCC
Q 000711 1254 DILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1254 ~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~i~~~d~~l~l~~g~ 1328 (1338)
.+||+|||||++||||++++|+++||||||++||..+.+.+.+.+++ .|+|+|+|+|+++.+..+|+++.|.+|+
T Consensus 141 ~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~ 219 (269)
T PRK13648 141 NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGT 219 (269)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCE
Confidence 57999999999999999999999999999999999999888776543 3899999999998777899999997653
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=303.88 Aligned_cols=172 Identities=25% Similarity=0.409 Sum_probs=149.4
Q ss_pred cEEEEeEEEEcCC---CCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCC--CCCccEEEeCCCC--ccccccEE
Q 000711 444 YIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW--PLVSGHIAKPGVG--SDLNKEIF 516 (1338)
Q Consensus 444 ~i~~~~v~~~~~~---~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~--~~~~G~i~~~~~~--~~~~~~i~ 516 (1338)
.++++|+++.|++ ++++++|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++|.+ ...++.++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 4889999999975 267999999999999999999999999999999999986 4899999999865 23456799
Q ss_pred EEecCCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHHHcc
Q 000711 517 YVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1338)
Q Consensus 517 ~v~Q~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~ 595 (1338)
|++|++.++. .|++||+.++. .++ +||||||||++||||++.
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~----------------~~~---------------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRFSA----------------LLR---------------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred EecccCccccCCcHHHHHHHHH----------------HHh---------------------cCCHHHhHHHHHHHHHhc
Confidence 9999998776 59999997631 000 599999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhh--HhhcceEEEccCCCc
Q 000711 596 KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPAL--VAFHDVVLSLDGEGE 652 (1338)
Q Consensus 596 ~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~--~~~~d~i~~l~~~g~ 652 (1338)
+|++++|||||++||+.+.+.+.+.+++ .|+|+|++||+++. ...+|++++|+++|.
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~ 187 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGK 187 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCe
Confidence 9999999999999999999999988764 48999999999973 578999999986443
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=327.40 Aligned_cols=199 Identities=26% Similarity=0.348 Sum_probs=161.7
Q ss_pred CcEEEEeEEEEcCC---CCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCC---ccEEEeCCCCc------c
Q 000711 443 NYIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV---SGHIAKPGVGS------D 510 (1338)
Q Consensus 443 ~~i~~~~v~~~~~~---~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~---~G~i~~~~~~~------~ 510 (1338)
..++++|+++.|+. ..++++|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|.+- +
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~ 90 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKE 90 (330)
T ss_pred ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHH
Confidence 46999999998863 247999999999999999999999999999999999999996 99999999651 1
Q ss_pred ---cc-ccEEEEecCCC--C-CCCCHHHHhcCCCCCCc-ccCCCCHHHHHHHHHHcCCch---HHhcCCCCccccCCCCC
Q 000711 511 ---LN-KEIFYVPQRPY--T-AVGTLRDQLIYPLTSDQ-EVEPLTHGGMVELLKNVDLEY---LLDRYPPEKEINWGDEL 579 (1338)
Q Consensus 511 ---~~-~~i~~v~Q~~~--l-~~~tl~eni~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~~~~g~~L 579 (1338)
++ +.|+||||+|. + +..|+.+|+..+..... .......+++.++++.+++.+ ..++.| .+|
T Consensus 91 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p--------~~L 162 (330)
T PRK09473 91 LNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYP--------HEF 162 (330)
T ss_pred HHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCc--------ccC
Confidence 12 47999999983 4 34688888764321110 000112346778899999864 234444 689
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 580 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 580 SgGqkQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
|||||||++|||||+.+|+++|+||||++||..+...+.+.+++ .|.|+|+|||+++.+. .+|+|++|.+
T Consensus 163 SgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~ 237 (330)
T PRK09473 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYA 237 (330)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999887753 3899999999999885 7999999976
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=319.25 Aligned_cols=206 Identities=24% Similarity=0.313 Sum_probs=164.3
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc--CCcccEEEE
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFYV 1177 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~--~lr~~i~~V 1177 (1338)
++++|+++.|++ +++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++.... ..+.+++|+
T Consensus 2 l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 2 LRLSRVSWSAGG-RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred ceEEeEEEEECC-EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 689999999965 57999999999999999999999999999999999999999999999999887652 234579999
Q ss_pred cCCCCC-CCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCC
Q 000711 1178 PQRPYT-CLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDIL 1256 (1338)
Q Consensus 1178 pQdP~L-F~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~L 1256 (1338)
||+|.+ +..|+++|+.++....... .+. .....+..+.++++.+++.+..++. ...|
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~------~~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~L 138 (256)
T TIGR03873 81 EQDSDTAVPLTVRDVVALGRIPHRSL------WAG------DSPHDAAVVDRALARTELSHLADRD----------MSTL 138 (256)
T ss_pred cccCccCCCCCHHHHHHhcchhhhhh------ccC------CCHHHHHHHHHHHHHcCcHhhhcCC----------cccC
Confidence 999964 5689999997642110000 000 0001123456677777775433221 3579
Q ss_pred ChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCCCc-ccccceEEEecCC
Q 000711 1257 SLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLELRLIDGE 1328 (1338)
Q Consensus 1257 SgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~~i-~~~d~~l~l~~g~ 1328 (1338)
|||||||++||||++.+|+++||||||++||.++.+.+.+.+++ .+.|+|+++|+++.+ ..+|+++.|.+|+
T Consensus 139 S~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 214 (256)
T TIGR03873 139 SGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGR 214 (256)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999999999887776643 389999999999977 7899999997765
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=316.96 Aligned_cols=198 Identities=22% Similarity=0.305 Sum_probs=161.4
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCC-----c-c-------
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----S-D------- 510 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~-----~-~------- 510 (1338)
.++++||++.|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . .
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 3 LLQVSGLSKSYGG-GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred eEEEeeeEEEeCC-ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence 5899999999964 579999999999999999999999999999999999999999999998753 1 0
Q ss_pred --ccccEEEEecCCCC---CCCCHHHHhcCCCC-CCcccCCCCHHHHHHHHHHcCCc-hHHhcCCCCccccCCCCCChhH
Q 000711 511 --LNKEIFYVPQRPYT---AVGTLRDQLIYPLT-SDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGE 583 (1338)
Q Consensus 511 --~~~~i~~v~Q~~~l---~~~tl~eni~~~~~-~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~g~~LSgGq 583 (1338)
.++.++|++|+|.. +..|+.+|+.+... .........++++.++++.+++. +..++.+ ..|||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--------~~LSgG~ 153 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLP--------RAFSGGM 153 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCc--------hhcCHHH
Confidence 12469999999852 34588888854210 00000011245677889999986 3555544 6899999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc----cCCeEEEEecChhhHh-hcceEEEccCC
Q 000711 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 584 kQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
|||++|||||+.+|+++||||||++||+.+.+.+++.+++ .|.|+|+|||+++.+. .+|++++|+++
T Consensus 154 ~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G 225 (253)
T TIGR02323 154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQG 225 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 9999999999999999999999999999999999887754 3899999999999886 69999999863
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=316.94 Aligned_cols=199 Identities=29% Similarity=0.361 Sum_probs=163.5
Q ss_pred CCcEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCC------CC------c
Q 000711 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG------VG------S 509 (1338)
Q Consensus 442 ~~~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~------~~------~ 509 (1338)
...++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+ .
T Consensus 8 ~~~i~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 8 EDVFNISRLYLYIN-DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred hhheeeeeEEEecC-CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 35699999999995 56899999999999999999999999999999999999999998777665 32 1
Q ss_pred cccccEEEEecCCCCCCC-CHHHHhcCCCCCCcccC-CCCHHHHHHHHHHcCCch----HHhcCCCCccccCCCCCChhH
Q 000711 510 DLNKEIFYVPQRPYTAVG-TLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGE 583 (1338)
Q Consensus 510 ~~~~~i~~v~Q~~~l~~~-tl~eni~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~g~~LSgGq 583 (1338)
..++.++|+||+|.++.+ |++||+.++........ ....+++.++++.+++++ ..++. ...|||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~LS~G~ 158 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSP--------ASQLSGGQ 158 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCC--------cccCCHHH
Confidence 235679999999988875 99999987532110000 011245677888888864 23332 36899999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhH-hhcceEEEccC
Q 000711 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 649 (1338)
Q Consensus 584 kQRlalARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~-~~~d~i~~l~~ 649 (1338)
|||++||||++.+|++++|||||++||+.+++.+.+.+.+ .+.|+|++||+++.+ ..||++++|++
T Consensus 159 ~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~ 227 (257)
T PRK14246 159 QQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYN 227 (257)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999998865 368999999999988 57999999986
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=318.05 Aligned_cols=203 Identities=23% Similarity=0.323 Sum_probs=162.2
Q ss_pred ceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc--CCcccEEE
Q 000711 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFY 1176 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~--~lr~~i~~ 1176 (1338)
.|+++||+++|++ +++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.++|.++.... ..+.+++|
T Consensus 2 ~l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 2 MLEARNLSVRLGG-RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred eEEEEeEEEEeCC-eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 3789999999975 57999999999999999999999999999999999999999999999999886542 23457999
Q ss_pred EcCCCCC-CCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCC
Q 000711 1177 VPQRPYT-CLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 1255 (1338)
Q Consensus 1177 VpQdP~L-F~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~ 1255 (1338)
+||+|.+ +..|++||+.++..... . .....+..+.++++.+++....++. ...
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~----------~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~ 134 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHG----------L------SRAEDDALVAAALAQVDLAHLAGRD----------YPQ 134 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccC----------C------CcHHHHHHHHHHHHHcCCHhHhcCC----------ccc
Confidence 9999988 67899999975421000 0 0000123345666777764433221 357
Q ss_pred CChhHHHHHHHHHHhh------cCCCEEEeecCCCCCCHHHHHHHHHHHH----hcCCeEEEeccCCCCc-ccccceEEE
Q 000711 1256 LSLGEQQRLGMARLFF------HKPKFGILDECTNATSVDVEEQLYRLAK----DMGITFVTSSQRPALI-PFHSLELRL 1324 (1338)
Q Consensus 1256 LSgGQrQrlaiARAlL------r~p~ILiLDEATSaLD~~te~~i~~~~~----~~~~TvI~IAHRl~~i-~~~d~~l~l 1324 (1338)
||||||||++||||++ ++|++|||||||++||.++.+.+.+.++ ..+.|||+|+|.++.+ .++|+++.|
T Consensus 135 LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 214 (258)
T PRK13548 135 LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLL 214 (258)
T ss_pred CCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEE
Confidence 9999999999999999 5999999999999999999887776553 3489999999999866 589999999
Q ss_pred ecCC
Q 000711 1325 IDGE 1328 (1338)
Q Consensus 1325 ~~g~ 1328 (1338)
.+|.
T Consensus 215 ~~G~ 218 (258)
T PRK13548 215 HQGR 218 (258)
T ss_pred ECCE
Confidence 7664
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=317.80 Aligned_cols=210 Identities=19% Similarity=0.242 Sum_probs=162.4
Q ss_pred CCceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCC--C---CCceEEcCCCCCccc----
Q 000711 1097 QDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP--V---VSGSLTKPSQHIDEE---- 1167 (1338)
Q Consensus 1097 ~g~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~--~---~sG~I~idg~dI~~~---- 1167 (1338)
+|.|+++|+++.|++ +++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++...
T Consensus 2 ~~~l~~~nl~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 80 (252)
T PRK14256 2 NNKVKLEQLNVHFGK-NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80 (252)
T ss_pred CcEEEEEEEEEEeCC-eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCCh
Confidence 467999999999974 579999999999999999999999999999999999986 3 589999999988642
Q ss_pred cCCcccEEEEcCCCCCCC-CCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccC
Q 000711 1168 AGSGCGIFYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGW 1246 (1338)
Q Consensus 1168 ~~lr~~i~~VpQdP~LF~-GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gl 1246 (1338)
...+.+++||||+|.+|. .|+++|+.++.... +. . .....++.+.++++.+++...+... +
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~----------~~---~--~~~~~~~~~~~~l~~~~l~~~~~~~---~ 142 (252)
T PRK14256 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN----------GR---V--NRSEADEIVESSLKRVALWDEVKDR---L 142 (252)
T ss_pred HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhc----------CC---C--CHHHHHHHHHHHHHHcCCchhhhHH---h
Confidence 234567999999999998 59999997532100 00 0 0000122344555565553221110 0
Q ss_pred cccCcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCc-ccccceEE
Q 000711 1247 DANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALI-PFHSLELR 1323 (1338)
Q Consensus 1247 dt~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i-~~~d~~l~ 1323 (1338)
+. ....||||||||++||||++++|++|||||||++||.++.+.+.+.+++ .+.|+|+|+|+++.+ +++|+++.
T Consensus 143 ~~---~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~ 219 (252)
T PRK14256 143 KS---NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAF 219 (252)
T ss_pred hC---CcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEE
Confidence 11 2357999999999999999999999999999999999999888776653 378999999999865 78999999
Q ss_pred EecCC
Q 000711 1324 LIDGE 1328 (1338)
Q Consensus 1324 l~~g~ 1328 (1338)
|.+|.
T Consensus 220 l~~G~ 224 (252)
T PRK14256 220 FYMGD 224 (252)
T ss_pred EECCE
Confidence 97654
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=304.04 Aligned_cols=169 Identities=31% Similarity=0.452 Sum_probs=148.9
Q ss_pred cEEEEeEEEEcCC-----CCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCC--CCCccEEEeCCCCc---cccc
Q 000711 444 YIEFSGVKVVTPT-----GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW--PLVSGHIAKPGVGS---DLNK 513 (1338)
Q Consensus 444 ~i~~~~v~~~~~~-----~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~--~~~~G~i~~~~~~~---~~~~ 513 (1338)
.++++||++.|++ ++++++|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|.+. ..++
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 4889999999975 368999999999999999999999999999999999999 99999999998752 3467
Q ss_pred cEEEEecCCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHH
Q 000711 514 EIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1338)
Q Consensus 514 ~i~~v~Q~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARa 592 (1338)
.++|+||++.++. .|++||+.++.. + ..||||||||++||||
T Consensus 83 ~i~~~~q~~~~~~~~t~~~~i~~~~~----------------~---------------------~~LS~G~~qrv~lara 125 (194)
T cd03213 83 IIGYVPQDDILHPTLTVRETLMFAAK----------------L---------------------RGLSGGERKRVSIALE 125 (194)
T ss_pred eEEEccCcccCCCCCcHHHHHHHHHH----------------h---------------------ccCCHHHHHHHHHHHH
Confidence 7999999998876 599999865310 0 0599999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChh-hH-hhcceEEEccC
Q 000711 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPA-LV-AFHDVVLSLDG 649 (1338)
Q Consensus 593 l~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~-~~-~~~d~i~~l~~ 649 (1338)
++++|++++|||||++||+.+.+.+.+.+++ .++|+|++||+++ .+ ..+|++++|++
T Consensus 126 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~ 187 (194)
T cd03213 126 LVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ 187 (194)
T ss_pred HHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC
Confidence 9999999999999999999999999988764 4899999999986 34 57999999986
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=280.27 Aligned_cols=191 Identities=20% Similarity=0.308 Sum_probs=157.5
Q ss_pred CccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc--cCCcccEEEEcCCCCCCCCCH
Q 000711 1111 SQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTL 1188 (1338)
Q Consensus 1111 ~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~--~~lr~~i~~VpQdP~LF~GTI 1188 (1338)
++.++|+++||++.+||.++|+|||||||||+++.++-+.+|++|+++..|.|++.. ...|++++|+-|.|.||.+||
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tV 93 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTV 93 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccch
Confidence 467899999999999999999999999999999999999999999999999999988 467889999999999999999
Q ss_pred HHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCCChhHHHHHHHHH
Q 000711 1189 RDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMAR 1268 (1338)
Q Consensus 1189 ReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSgGQrQrlaiAR 1268 (1338)
.||+.+|..-.. .+...+...+.++.+++.+-+ |+.+ -.+||||||||+||+|
T Consensus 94 eDNlifP~~~r~------------------rr~dr~aa~~llar~~l~~~~------L~k~---it~lSGGE~QriAliR 146 (223)
T COG4619 94 EDNLIFPWQIRN------------------RRPDRAAALDLLARFALPDSI------LTKN---ITELSGGEKQRIALIR 146 (223)
T ss_pred hhccccchHHhc------------------cCCChHHHHHHHHHcCCchhh------hcch---hhhccchHHHHHHHHH
Confidence 999998853100 000112223344555543221 1222 3579999999999999
Q ss_pred HhhcCCCEEEeecCCCCCCHHHHHHHHHHH----HhcCCeEEEeccCCC-CcccccceEEEecCC
Q 000711 1269 LFFHKPKFGILDECTNATSVDVEEQLYRLA----KDMGITFVTSSQRPA-LIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1269 AlLr~p~ILiLDEATSaLD~~te~~i~~~~----~~~~~TvI~IAHRl~-~i~~~d~~l~l~~g~ 1328 (1338)
-|---|+||+|||+|||||+.+.+.|.+++ ++.+..++=|+|..+ .++.++++..+.+|.
T Consensus 147 ~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~ 211 (223)
T COG4619 147 NLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGH 211 (223)
T ss_pred HhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCc
Confidence 999999999999999999999988877665 356899999999996 499999999997764
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=317.05 Aligned_cols=211 Identities=21% Similarity=0.316 Sum_probs=159.7
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCC--CCCCCceEEcCCCCCcccc---CCcccE
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGL--WPVVSGSLTKPSQHIDEEA---GSGCGI 1174 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl--~~~~sG~I~idg~dI~~~~---~lr~~i 1174 (1338)
|+++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|.|+ ++|++|+|.++|.++.... ..+.++
T Consensus 1 l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 79 (243)
T TIGR01978 1 LKIKDLHVSVED-KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL 79 (243)
T ss_pred CeEeeEEEEECC-EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence 578999999974 5799999999999999999999999999999999999 4799999999999887652 234459
Q ss_pred EEEcCCCCCCCC-CHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCccc
Q 000711 1175 FYVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 1253 (1338)
Q Consensus 1175 ~~VpQdP~LF~G-TIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g 1253 (1338)
+||||+|.+|.+ |+++|+.++..... . . ... ... .....++.+.++++.+++.... .+... .
T Consensus 80 ~~v~q~~~~~~~~t~~~~~~~~~~~~~---~-~--~~~-~~~--~~~~~~~~~~~~l~~~~l~~~~------~~~~~--~ 142 (243)
T TIGR01978 80 FLAFQYPEEIPGVSNLEFLRSALNARR---S-A--RGE-EPL--DLLDFLKLLKAKLALLGMDEEF------LNRSV--N 142 (243)
T ss_pred EeeeccccccCCcCHHHHHHHHHHHhh---c-c--ccc-ccc--cHHHHHHHHHHHHHHcCCchhh------ccccc--c
Confidence 999999999886 89999864311000 0 0 000 000 0001123456667766663110 01111 1
Q ss_pred CCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCCCccc--ccceEEEecCC
Q 000711 1254 DILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALIPF--HSLELRLIDGE 1328 (1338)
Q Consensus 1254 ~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~~i~~--~d~~l~l~~g~ 1328 (1338)
..||||||||++||||++++|++|||||||++||.++.+.+.+.+++ .++|+|+|+|+++.+.. +|+++.|.+|+
T Consensus 143 ~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~ 222 (243)
T TIGR01978 143 EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGR 222 (243)
T ss_pred cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCE
Confidence 24999999999999999999999999999999999999888776643 47999999999987754 69999997664
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=319.58 Aligned_cols=209 Identities=22% Similarity=0.234 Sum_probs=161.1
Q ss_pred ceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCC-----CCceEEcCCCCCcc--c--cC
Q 000711 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPV-----VSGSLTKPSQHIDE--E--AG 1169 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~-----~sG~I~idg~dI~~--~--~~ 1169 (1338)
.|+++||++.|++ +++|+|+||+|++||.+||+||||||||||+++|.|+++| ++|+|.+||.++.. . ..
T Consensus 4 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 4 AIETVNLRVYYGS-NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred eEEEEeEEEEeCC-eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence 5899999999965 5699999999999999999999999999999999999987 49999999998862 2 23
Q ss_pred CcccEEEEcCCCCCCCC-CHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcc
Q 000711 1170 SGCGIFYVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDA 1248 (1338)
Q Consensus 1170 lr~~i~~VpQdP~LF~G-TIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt 1248 (1338)
.+.+++||||+|.+|.+ |+++|+.++.... +.. ...+..+..+.++++.+++...++. .++.
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~----------~~~----~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~ 145 (253)
T PRK14267 83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKLN----------GLV----KSKKELDERVEWALKKAALWDEVKD---RLND 145 (253)
T ss_pred HhhceeEEecCCccCCCCcHHHHHHHHHHhc----------Ccc----CCHHHHHHHHHHHHHHcCCccchhh---hhcc
Confidence 45579999999999976 9999996531000 000 0000012234455565555321110 0111
Q ss_pred cCcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCc-ccccceEEEe
Q 000711 1249 NLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALI-PFHSLELRLI 1325 (1338)
Q Consensus 1249 ~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i-~~~d~~l~l~ 1325 (1338)
...+||||||||++||||++++|+++||||||++||.++.+.+.+.+++ .++|+|+|+|+++.+ .++|+++.|.
T Consensus 146 ---~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 222 (253)
T PRK14267 146 ---YPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLY 222 (253)
T ss_pred ---ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEE
Confidence 2357999999999999999999999999999999999999888776643 368999999999864 6799999997
Q ss_pred cCC
Q 000711 1326 DGE 1328 (1338)
Q Consensus 1326 ~g~ 1328 (1338)
+|+
T Consensus 223 ~G~ 225 (253)
T PRK14267 223 LGK 225 (253)
T ss_pred CCE
Confidence 765
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=318.88 Aligned_cols=209 Identities=23% Similarity=0.242 Sum_probs=163.5
Q ss_pred CceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCC-----CCCceEEcCCCCCccc----c
Q 000711 1098 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP-----VVSGSLTKPSQHIDEE----A 1168 (1338)
Q Consensus 1098 g~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~-----~~sG~I~idg~dI~~~----~ 1168 (1338)
..|+++||+++|++ +++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++... .
T Consensus 19 ~~l~~~nl~~~~~~-~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 97 (267)
T PRK14237 19 IALSTKDLHVYYGK-KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVY 97 (267)
T ss_pred eEEEEeeEEEEECC-eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChH
Confidence 47999999999864 679999999999999999999999999999999999997 5799999999988542 2
Q ss_pred CCcccEEEEcCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcc
Q 000711 1169 GSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDA 1248 (1338)
Q Consensus 1169 ~lr~~i~~VpQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt 1248 (1338)
..+++++||||+|.+|.+|+++|+.++... .+.. .....+..+.++++.+++...+... ++
T Consensus 98 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~----------~~~~-----~~~~~~~~~~~~l~~~~l~~~i~~~---~~- 158 (267)
T PRK14237 98 EMRKHIGMVFQRPNPFAKSIYENITFALER----------AGVK-----DKKVLDEIVETSLKQAALWDQVKDD---LH- 158 (267)
T ss_pred HHhcceEEEecCCccccccHHHHHHhHHHh----------cCCC-----CHHHHHHHHHHHHHHcCCCchhhhh---hc-
Confidence 235679999999999999999999754210 0000 0000123345566666653222110 11
Q ss_pred cCcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCc-ccccceEEEe
Q 000711 1249 NLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALI-PFHSLELRLI 1325 (1338)
Q Consensus 1249 ~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i-~~~d~~l~l~ 1325 (1338)
.....||+|||||+|||||++++|++|||||||++||..+.+.+.+++++ .+.|+|+|+|+++.+ .++|+++.|.
T Consensus 159 --~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~ 236 (267)
T PRK14237 159 --KSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFY 236 (267)
T ss_pred --CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEE
Confidence 12357999999999999999999999999999999999999888776643 478999999999755 7899999997
Q ss_pred cCC
Q 000711 1326 DGE 1328 (1338)
Q Consensus 1326 ~g~ 1328 (1338)
+|+
T Consensus 237 ~G~ 239 (267)
T PRK14237 237 LGD 239 (267)
T ss_pred CCE
Confidence 664
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=318.77 Aligned_cols=208 Identities=20% Similarity=0.228 Sum_probs=160.9
Q ss_pred ceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCC-----CCCceEEcCCCCCccc----cC
Q 000711 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP-----VVSGSLTKPSQHIDEE----AG 1169 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~-----~~sG~I~idg~dI~~~----~~ 1169 (1338)
.|+++||+++|++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++ |.+|+|.+||.++... ..
T Consensus 4 ~l~~~~l~~~~~~-~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~ 82 (251)
T PRK14251 4 IISAKDVHLSYGN-YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE 82 (251)
T ss_pred eEEEEeeEEEECC-eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence 4899999999975 579999999999999999999999999999999999997 4799999999988532 23
Q ss_pred CcccEEEEcCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCccc
Q 000711 1170 SGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDAN 1249 (1338)
Q Consensus 1170 lr~~i~~VpQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~ 1249 (1338)
.+..++||||+|.+|++|+++|+.++... .+.. ..+..+..+.++++.++++.... ..++.
T Consensus 83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~----------~~~~-----~~~~~~~~~~~~l~~~~l~~~~~---~~~~~- 143 (251)
T PRK14251 83 LRKEVGMVFQQPTPFPFSVYDNVAYGLKI----------AGVK-----DKELIDQRVEESLKQAAIWKETK---DNLDR- 143 (251)
T ss_pred hhccEEEEecCCccCCCcHHHHHHHHHHH----------cCCC-----CHHHHHHHHHHHHHHcCCCcchH---HHhcc-
Confidence 35579999999999999999999753210 0000 00001123344555555531110 11122
Q ss_pred CcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCc-ccccceEEEec
Q 000711 1250 LNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALI-PFHSLELRLID 1326 (1338)
Q Consensus 1250 ~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i-~~~d~~l~l~~ 1326 (1338)
...+||||||||++||||++++|+++||||||++||+++.+.+.+.+++ .+.|+|+|+|+++.+ +++|+++.|.+
T Consensus 144 --~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~ 221 (251)
T PRK14251 144 --NAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMN 221 (251)
T ss_pred --ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEEC
Confidence 2357999999999999999999999999999999999999888776654 378999999999864 67899999976
Q ss_pred CC
Q 000711 1327 GE 1328 (1338)
Q Consensus 1327 g~ 1328 (1338)
|+
T Consensus 222 G~ 223 (251)
T PRK14251 222 GD 223 (251)
T ss_pred CE
Confidence 54
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=316.96 Aligned_cols=202 Identities=22% Similarity=0.228 Sum_probs=160.0
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCC-----ccEEEeCCCCc--------c
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV-----SGHIAKPGVGS--------D 510 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~-----~G~i~~~~~~~--------~ 510 (1338)
.++++||++.|+ ++++++|+||+|++||+++|+||||||||||+|+|+|+++|. +|+|.++|.+. .
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 4 LLSAQDVNIYYG-DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EEEEeeeEEEEC-CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 588999999996 468999999999999999999999999999999999999874 89999998541 2
Q ss_pred ccccEEEEecCCCCCC-CCHHHHhcCCCCCCcc-cCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHH
Q 000711 511 LNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1338)
Q Consensus 511 ~~~~i~~v~Q~~~l~~-~tl~eni~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRla 588 (1338)
+++.++|+||++.++. .|+.||+.++...... ......+.+.+.++.+++.+.+... ......+||||||||++
T Consensus 83 ~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~----~~~~~~~LS~G~~qrv~ 158 (252)
T PRK14272 83 MRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDR----LKTPATGLSGGQQQRLC 158 (252)
T ss_pred hhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhh----hcCCcccCCHHHHHHHH
Confidence 3457999999998887 5999999864321100 0000123344556666654322110 01123689999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhHh-hcceEEEccCC
Q 000711 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1338)
Q Consensus 589 lARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~~-~~d~i~~l~~~ 650 (1338)
||||++++|++++|||||++||+.+.+.+.+.+++ .++|+|++||+++.+. .+|++++|+++
T Consensus 159 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 223 (252)
T PRK14272 159 IARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVG 223 (252)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999998865 3689999999999876 68999999863
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=300.34 Aligned_cols=161 Identities=27% Similarity=0.380 Sum_probs=143.3
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCCCCccEEEeCCCCc-------cccccEE
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------DLNKEIF 516 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~~~~G~i~~~~~~~-------~~~~~i~ 516 (1338)
.++++|+++.| +++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++
T Consensus 4 ~l~~~~l~~~~-----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (182)
T cd03215 4 VLEVRGLSVKG-----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIA 78 (182)
T ss_pred EEEEeccEEEe-----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeE
Confidence 58999999987 89999999999999999999999999999999999999999999998641 1345799
Q ss_pred EEecCC----CCCCCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHHH
Q 000711 517 YVPQRP----YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1338)
Q Consensus 517 ~v~Q~~----~l~~~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalARa 592 (1338)
|+||++ .++..|++||+.++.. ||||||||++||||
T Consensus 79 ~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------------LS~G~~qrl~la~a 118 (182)
T cd03215 79 YVPEDRKREGLVLDLSVAENIALSSL----------------------------------------LSGGNQQKVVLARW 118 (182)
T ss_pred EecCCcccCcccCCCcHHHHHHHHhh----------------------------------------cCHHHHHHHHHHHH
Confidence 999985 3445799999976410 99999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHc---cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 593 l~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
++++|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+. .+|++++|++
T Consensus 119 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~ 179 (182)
T cd03215 119 LARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYE 179 (182)
T ss_pred HccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecC
Confidence 9999999999999999999999999998764 3799999999998775 5999999976
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=318.44 Aligned_cols=209 Identities=21% Similarity=0.213 Sum_probs=162.2
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCC-----CCCceEEcCCCCCcccc----CC
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP-----VVSGSLTKPSQHIDEEA----GS 1170 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~-----~~sG~I~idg~dI~~~~----~l 1170 (1338)
-+++||++.|+ .+++|+|+||+|++||.++|+|+||||||||+++|.|+++ |++|+|.++|.++.... ..
T Consensus 6 ~~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 84 (251)
T PRK14244 6 ASVKNLNLWYG-SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLL 84 (251)
T ss_pred EEeeeEEEEEC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHH
Confidence 47899999986 4579999999999999999999999999999999999986 47999999999886532 24
Q ss_pred cccEEEEcCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccC
Q 000711 1171 GCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 1250 (1338)
Q Consensus 1171 r~~i~~VpQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~ 1250 (1338)
+.+++||||+|.+|.+|+++|+.++... .+.. . .....+..+.++++.+++...+.. -++
T Consensus 85 ~~~i~~v~q~~~~~~~tv~~ni~~~~~~----------~~~~---~-~~~~~~~~~~~~l~~~~l~~~~~~---~~~--- 144 (251)
T PRK14244 85 RAKVGMVFQKPNPFPKSIYDNVAYGPKL----------HGLA---K-NKKKLDEIVEKSLTSVGLWEELGD---RLK--- 144 (251)
T ss_pred hhhEEEEecCcccccCCHHHHHHHHHHh----------cCCC---C-CHHHHHHHHHHHHHHcCCCchhhh---Hhh---
Confidence 5679999999999999999999753100 0000 0 000112345566677666321110 001
Q ss_pred cccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCc-ccccceEEEecC
Q 000711 1251 NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALI-PFHSLELRLIDG 1327 (1338)
Q Consensus 1251 ~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i-~~~d~~l~l~~g 1327 (1338)
.....||||||||++||||++++|+++||||||++||..+.+.+.+.+++ .++|+|+|+|+++.+ +++|+++.|.+|
T Consensus 145 ~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G 224 (251)
T PRK14244 145 DSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSG 224 (251)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECC
Confidence 12357999999999999999999999999999999999999988877654 489999999999875 579999999776
Q ss_pred CC
Q 000711 1328 EG 1329 (1338)
Q Consensus 1328 ~g 1329 (1338)
+-
T Consensus 225 ~i 226 (251)
T PRK14244 225 RI 226 (251)
T ss_pred EE
Confidence 53
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=305.87 Aligned_cols=191 Identities=20% Similarity=0.275 Sum_probs=154.9
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCccc-cCCcccEEEEc
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-AGSGCGIFYVP 1178 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~-~~lr~~i~~Vp 1178 (1338)
|+++||++.|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ...+++++|+|
T Consensus 2 l~~~~l~~~~~~-~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~ 80 (200)
T PRK13540 2 LDVIELDFDYHD-QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVG 80 (200)
T ss_pred EEEEEEEEEeCC-eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEec
Confidence 689999999865 5699999999999999999999999999999999999999999999999988643 23355799999
Q ss_pred CCCCCC-CCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccCCCC
Q 000711 1179 QRPYTC-LGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 1257 (1338)
Q Consensus 1179 QdP~LF-~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LS 1257 (1338)
|+|.++ ..|+++|+.++..... .+..+.++++.+++.+..+ .. ...||
T Consensus 81 q~~~~~~~~tv~~~~~~~~~~~~---------------------~~~~~~~~l~~~~l~~~~~-------~~---~~~LS 129 (200)
T PRK13540 81 HRSGINPYLTLRENCLYDIHFSP---------------------GAVGITELCRLFSLEHLID-------YP---CGLLS 129 (200)
T ss_pred cccccCcCCCHHHHHHHHHhcCc---------------------chHHHHHHHHHcCCchhhh-------CC---hhhcC
Confidence 999987 5799999975311000 0123445566655533221 11 23699
Q ss_pred hhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh---cCCeEEEeccCCCCcccccceE
Q 000711 1258 LGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALIPFHSLEL 1322 (1338)
Q Consensus 1258 gGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~---~~~TvI~IAHRl~~i~~~d~~l 1322 (1338)
+|||||++||||++++|++|||||||++||..+.+.+.+.+++ .++|+|+++|+...++-+|...
T Consensus 130 ~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~ 197 (200)
T PRK13540 130 SGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEE 197 (200)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhh
Confidence 9999999999999999999999999999999999888776653 4899999999999887777653
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=319.41 Aligned_cols=208 Identities=22% Similarity=0.227 Sum_probs=165.1
Q ss_pred CceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc--CCcccEE
Q 000711 1098 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIF 1175 (1338)
Q Consensus 1098 g~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~--~lr~~i~ 1175 (1338)
-.|+++||+++|++ +.+|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.++|.++.... ..+.+++
T Consensus 6 ~~l~i~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (265)
T PRK10253 6 ARLRGEQLTLGYGK-YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIG 84 (265)
T ss_pred cEEEEEEEEEEECC-EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheE
Confidence 47999999999975 56999999999999999999999999999999999999999999999999886542 2345799
Q ss_pred EEcCCCCCCC-CCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcccC
Q 000711 1176 YVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWED 1254 (1338)
Q Consensus 1176 ~VpQdP~LF~-GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~ 1254 (1338)
||||+|.+|. .|+++|+.++...... . .....+..+..+.++++.+++.....+ ...
T Consensus 85 ~v~q~~~~~~~~tv~~~~~~~~~~~~~------~------~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~ 142 (265)
T PRK10253 85 LLAQNATTPGDITVQELVARGRYPHQP------L------FTRWRKEDEEAVTKAMQATGITHLADQ----------SVD 142 (265)
T ss_pred EeeccCcCCCCCcHHHHHHhCcccccc------c------ccCCCHHHHHHHHHHHHHcCCHHHhcC----------Ccc
Confidence 9999999875 6999999754210000 0 000000112345667777777543322 135
Q ss_pred CCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCC-CcccccceEEEecCC
Q 000711 1255 ILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPA-LIPFHSLELRLIDGE 1328 (1338)
Q Consensus 1255 ~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~-~i~~~d~~l~l~~g~ 1328 (1338)
.||||||||++||||++++|+++||||||++||.++.+.+.+.+++ .++|+|+++|+++ ..+++|+++.|.+|+
T Consensus 143 ~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~ 221 (265)
T PRK10253 143 TLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGK 221 (265)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 7999999999999999999999999999999999999888776543 3889999999997 558899999997664
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=316.09 Aligned_cols=209 Identities=22% Similarity=0.262 Sum_probs=161.3
Q ss_pred CceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCC-----CCceEEcCCCCCccc----c
Q 000711 1098 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPV-----VSGSLTKPSQHIDEE----A 1168 (1338)
Q Consensus 1098 g~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~-----~sG~I~idg~dI~~~----~ 1168 (1338)
|.|+++||++.|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++| ++|+|.+||.++... .
T Consensus 2 ~~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14240 2 GKISVKDLDLFYGD-FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVN 80 (250)
T ss_pred CeEEEEEEEEEECC-ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence 57999999999975 5799999999999999999999999999999999999863 699999999988642 2
Q ss_pred CCcccEEEEcCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcc
Q 000711 1169 GSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDA 1248 (1338)
Q Consensus 1169 ~lr~~i~~VpQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt 1248 (1338)
..|.+++||||+|.+|+.|+++|+.++... .+.. ..+..++.+.++++.+++...+.. -++.
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~----------~~~~-----~~~~~~~~~~~~l~~~~l~~~l~~---~~~~ 142 (250)
T PRK14240 81 QLRKRVGMVFQQPNPFPMSIYDNVAYGPRT----------HGIK-----DKKKLDEIVEKSLKGAALWDEVKD---RLKK 142 (250)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHh----------cCCC-----CHHHHHHHHHHHHHHcCCchhhHH---HHhc
Confidence 345679999999999999999999753100 0000 000012234444555544221110 0111
Q ss_pred cCcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCC-cccccceEEEe
Q 000711 1249 NLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPAL-IPFHSLELRLI 1325 (1338)
Q Consensus 1249 ~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~-i~~~d~~l~l~ 1325 (1338)
....||||||||++||||++++|++|||||||++||.++...+.+.+++ .++|+|+|+|+++. .+.+|+++.|.
T Consensus 143 ---~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~ 219 (250)
T PRK14240 143 ---SALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFL 219 (250)
T ss_pred ---CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEE
Confidence 2357999999999999999999999999999999999999888776653 47899999999985 46799999997
Q ss_pred cCC
Q 000711 1326 DGE 1328 (1338)
Q Consensus 1326 ~g~ 1328 (1338)
+|+
T Consensus 220 ~G~ 222 (250)
T PRK14240 220 NGE 222 (250)
T ss_pred CCE
Confidence 764
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=276.31 Aligned_cols=204 Identities=26% Similarity=0.329 Sum_probs=164.1
Q ss_pred ceEEeeeEEeCCC---ccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc------C
Q 000711 1099 SISFSKLDIITPS---QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA------G 1169 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~---~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~------~ 1169 (1338)
-|+.++++..-++ .-.+|++++|.|++||+||||||||||||||+.+|.|+-+|++|+|.+.|.++..++ .
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 5777787775433 356999999999999999999999999999999999999999999999999998872 3
Q ss_pred CcccEEEEcCCCCCC-CCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcc
Q 000711 1170 SGCGIFYVPQRPYTC-LGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDA 1248 (1338)
Q Consensus 1170 lr~~i~~VpQdP~LF-~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt 1248 (1338)
+.+++++|.|.-.|. +-|--||+..|..- .|.. .++ .-....+.|+.+||..-+.
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL----------~ge~-----~~~-~~~~A~~lL~~vGLg~Rl~-------- 141 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLEL----------RGES-----SAD-SRAGAKALLEAVGLGKRLT-------- 141 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhh----------cCCc-----ccc-HHHHHHHHHHHhCcccccc--------
Confidence 455899999998875 46888998777421 1100 000 1112345667777643222
Q ss_pred cCcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHH----HhcCCeEEEeccCCCCcccccceEEE
Q 000711 1249 NLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLA----KDMGITFVTSSQRPALIPFHSLELRL 1324 (1338)
Q Consensus 1249 ~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~----~~~~~TvI~IAHRl~~i~~~d~~l~l 1324 (1338)
....+|||||+||+|||||+.-.|+||+-||||-+||.+|-+.|..++ ++.|.|.|.|+|.+.+-.-|++.+++
T Consensus 142 --HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~ 219 (228)
T COG4181 142 --HYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRL 219 (228)
T ss_pred --cCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeee
Confidence 235689999999999999999999999999999999999998877654 45799999999999999999999999
Q ss_pred ecCC
Q 000711 1325 IDGE 1328 (1338)
Q Consensus 1325 ~~g~ 1328 (1338)
.+|+
T Consensus 220 ~~G~ 223 (228)
T COG4181 220 RSGR 223 (228)
T ss_pred ecce
Confidence 7764
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=303.59 Aligned_cols=175 Identities=21% Similarity=0.293 Sum_probs=147.1
Q ss_pred cEEEEeEEEEcCC---CCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCC---CCccEEEeCCCC-----cccc
Q 000711 444 YIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP---LVSGHIAKPGVG-----SDLN 512 (1338)
Q Consensus 444 ~i~~~~v~~~~~~---~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~---~~~G~i~~~~~~-----~~~~ 512 (1338)
.+.++||+|.||. ++++++|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+ ...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 4789999999985 4689999999999999999999999999999999999999 899999999864 1245
Q ss_pred ccEEEEecCCCCCC-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHHHH
Q 000711 513 KEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1338)
Q Consensus 513 ~~i~~v~Q~~~l~~-~tl~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlalAR 591 (1338)
+.++|+||++.++. .|++||+.++... . .++. ...||||||||++|||
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~------------~-----------~~~~--------~~~LS~Ge~qrl~lar 131 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRC------------K-----------GNEF--------VRGISGGERKRVSIAE 131 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhh------------c-----------cccc--------hhhCCHHHHHHHHHHH
Confidence 67999999998776 5999999874210 0 1222 2589999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHc---c-CCeEEEEec-Chhh-HhhcceEEEccC
Q 000711 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA---M-GTSCITISH-RPAL-VAFHDVVLSLDG 649 (1338)
Q Consensus 592 al~~~p~illLDEpts~LD~~~~~~i~~~l~~---~-~~t~i~itH-~~~~-~~~~d~i~~l~~ 649 (1338)
|++++|+++||||||++||+.+++.+++.+++ . +.|+|+++| +.+. ...+|++++|++
T Consensus 132 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~ 195 (202)
T cd03233 132 ALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE 195 (202)
T ss_pred HHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC
Confidence 99999999999999999999999999988764 2 567666655 4444 468999999987
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=317.57 Aligned_cols=208 Identities=20% Similarity=0.246 Sum_probs=161.4
Q ss_pred ceEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCC---CCC--CCceEEcCCCCCccc----cC
Q 000711 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGL---WPV--VSGSLTKPSQHIDEE----AG 1169 (1338)
Q Consensus 1099 ~I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl---~~~--~sG~I~idg~dI~~~----~~ 1169 (1338)
.|+++||++.|++ +++|+|+||+|++||.+||+||||||||||+++|.|+ ++| ++|+|.+||.++... ..
T Consensus 3 ~l~~~~~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14245 3 KIDARDVNFWYGD-FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE 81 (250)
T ss_pred EEEEEEEEEEECC-EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence 5899999999965 5699999999999999999999999999999999997 454 589999999988652 23
Q ss_pred CcccEEEEcCCCCCCCCCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCccc
Q 000711 1170 SGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDAN 1249 (1338)
Q Consensus 1170 lr~~i~~VpQdP~LF~GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~ 1249 (1338)
.+.+++||||+|.+|.+|+++|+.++... .+.. ..+..+..+.++++.+++...++.. ++
T Consensus 82 ~~~~i~~v~q~~~~~~~tv~~nl~~~~~~----------~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~---~~-- 141 (250)
T PRK14245 82 LRKNVGMVFQRPNPFPKSIFENVAYGLRV----------NGVK-----DNAFIRQRVEETLKGAALWDEVKDK---LK-- 141 (250)
T ss_pred HhhheEEEecCCccCcccHHHHHHHHHHH----------cCCC-----cHHHHHHHHHHHHHHcCCCcchhhh---hh--
Confidence 35579999999999999999999653110 0000 0000123345566666653222110 01
Q ss_pred CcccCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh--cCCeEEEeccCCCCc-ccccceEEEec
Q 000711 1250 LNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALI-PFHSLELRLID 1326 (1338)
Q Consensus 1250 ~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~--~~~TvI~IAHRl~~i-~~~d~~l~l~~ 1326 (1338)
.....||||||||++||||++++|+++||||||++||.++.+.+.+.+++ .++|+|+|+|+++.+ .++|+++.|.+
T Consensus 142 -~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~ 220 (250)
T PRK14245 142 -ESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYM 220 (250)
T ss_pred -CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEEC
Confidence 12357999999999999999999999999999999999999988777654 479999999999865 77999999976
Q ss_pred CC
Q 000711 1327 GE 1328 (1338)
Q Consensus 1327 g~ 1328 (1338)
|+
T Consensus 221 G~ 222 (250)
T PRK14245 221 GE 222 (250)
T ss_pred CE
Confidence 54
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=314.06 Aligned_cols=201 Identities=23% Similarity=0.255 Sum_probs=163.4
Q ss_pred cEEEEeEEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHcCCCC-----CCccEEEeCCCCc--------c
Q 000711 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS--------D 510 (1338)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~~sl~i~~G~~~~i~G~sGsGKSTLl~~l~g~~~-----~~~G~i~~~~~~~--------~ 510 (1338)
.++++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+. .
T Consensus 3 ~l~~~~v~~~~~-~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 3 RIEVENLNTYFD-DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE 81 (250)
T ss_pred EEEEEeEEEEeC-CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence 478999999986 4679999999999999999999999999999999999864 4899999999641 2
Q ss_pred ccccEEEEecCCCCCCCCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCCchHHhcCCCCccccCCCCCChhHHHHHHH
Q 000711 511 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1338)
Q Consensus 511 ~~~~i~~v~Q~~~l~~~tl~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkQRlal 589 (1338)
+++.++|+||+|.++..|++||+.++....... .....+++.++++.+++.+.+.... ......||||||||++|
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~----~~~~~~LS~Gq~qrv~l 157 (250)
T PRK14266 82 LRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKL----DKSALGLSGGQQQRLCI 157 (250)
T ss_pred HhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHH----hCCcccCCHHHHHHHHH
Confidence 356799999999999899999998753211100 0112345777888988865432210 01236899999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHc--cCCeEEEEecChhhHh-hcceEEEccC
Q 000711 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 649 (1338)
Q Consensus 590 ARal~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~itH~~~~~~-~~d~i~~l~~ 649 (1338)
|||++++|++++|||||++||+.+...+.+.+++ .+.|+|++||+++.+. .+|+++++++
T Consensus 158 aral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~ 220 (250)
T PRK14266 158 ARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLN 220 (250)
T ss_pred HHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEEC
Confidence 9999999999999999999999999999998865 3789999999998765 6888988876
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=331.29 Aligned_cols=202 Identities=21% Similarity=0.173 Sum_probs=157.8
Q ss_pred eEEeeeEEeCCCccccccccceEEeCCCEEEEEcCCCCcHHHHHHHHhCCCCCCCceEEcCCCCCcccc------CCccc
Q 000711 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA------GSGCG 1173 (1338)
Q Consensus 1100 I~f~nV~f~yp~~~~vL~~lsf~I~~GekvaIVG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~dI~~~~------~lr~~ 1173 (1338)
+++++|.-.| +..++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.|+.... .++.+
T Consensus 29 ~~~~~~~~~~-~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~ 107 (400)
T PRK10070 29 LSKEQILEKT-GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107 (400)
T ss_pred ccHHHHHhhc-CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCC
Confidence 3444443333 2235899999999999999999999999999999999999999999999999987652 12357
Q ss_pred EEEEcCCCCCCC-CCHHHHhcCCCchHHHHHHHHhhhcCCccccccccCchHHHHHHHhhCCchhhhhhhcccCcccCcc
Q 000711 1174 IFYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNW 1252 (1338)
Q Consensus 1174 i~~VpQdP~LF~-GTIReNL~~p~~~~~~~~~a~~~a~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~ 1252 (1338)
|+||||+|.+|. .|++||+.++... .+.. ....++.+.++++.++|....++.
T Consensus 108 igyv~Q~~~l~~~~Tv~enl~~~~~~----------~~~~------~~~~~~~~~e~L~~~gL~~~~~~~---------- 161 (400)
T PRK10070 108 IAMVFQSFALMPHMTVLDNTAFGMEL----------AGIN------AEERREKALDALRQVGLENYAHSY---------- 161 (400)
T ss_pred EEEEECCCcCCCCCCHHHHHHHHHHh----------cCCC------HHHHHHHHHHHHHHcCCChhhhcC----------
Confidence 999999999997 5999999764210 0000 000123455677777775544333
Q ss_pred cCCCChhHHHHHHHHHHhhcCCCEEEeecCCCCCCHHHHHHHHHHHHh----cCCeEEEeccCCCC-cccccceEEEecC
Q 000711 1253 EDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPAL-IPFHSLELRLIDG 1327 (1338)
Q Consensus 1253 g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~te~~i~~~~~~----~~~TvI~IAHRl~~-i~~~d~~l~l~~g 1327 (1338)
..+||||||||++|||||+++|++||||||||+||+.+.+.+++.+++ .++|+|+|+|+++. .+++|+++.|.+|
T Consensus 162 ~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G 241 (400)
T PRK10070 162 PDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNG 241 (400)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECC
Confidence 247999999999999999999999999999999999999888776532 48999999999975 5789999999765
Q ss_pred C
Q 000711 1328 E 1328 (1338)
Q Consensus 1328 ~ 1328 (1338)
+
T Consensus 242 ~ 242 (400)
T PRK10070 242 E 242 (400)
T ss_pred E
Confidence 3
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1338 | ||||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 4e-14 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 4e-07 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-13 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 7e-06 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 3e-13 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 3e-05 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 3e-13 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 3e-05 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 3e-12 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 9e-09 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 1e-11 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 3e-07 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 2e-10 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 3e-10 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-05 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 3e-10 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 1e-09 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 1e-09 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-09 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 1e-09 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 1e-09 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 2e-05 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-09 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 2e-09 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 2e-06 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 5e-09 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 5e-09 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 6e-09 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 6e-09 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-09 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 9e-07 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-09 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-06 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-08 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-08 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-06 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 1e-08 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 2e-08 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 1e-04 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 3e-08 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 9e-04 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 3e-08 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 4e-04 | ||
| 1g29_1 | 372 | Malk Length = 372 | 4e-08 | ||
| 1g29_1 | 372 | Malk Length = 372 | 3e-04 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 4e-08 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 4e-08 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 6e-08 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 5e-06 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 6e-08 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 2e-04 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-07 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 9e-05 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 2e-07 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 3e-07 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 1e-04 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 6e-07 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 6e-07 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 6e-07 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 7e-07 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 7e-07 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 2e-06 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 4e-06 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 5e-06 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 8e-06 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 1e-05 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 2e-05 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 2e-05 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 2e-05 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 3e-05 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 3e-05 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 4e-05 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 5e-05 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-04 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 1e-04 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 1e-04 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 1e-04 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-04 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 2e-04 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 2e-04 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 3e-04 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 3e-04 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 7e-04 |
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1338 | |||
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 6e-24 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 5e-13 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 1e-04 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 4e-19 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 3e-13 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-10 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 6e-08 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-18 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 7e-15 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 7e-09 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-05 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 4e-18 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-09 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 1e-17 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 7e-08 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-17 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 3e-15 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 6e-08 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-07 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-17 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-15 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-08 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 3e-08 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 2e-17 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 3e-09 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 8e-15 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 7e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-14 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-05 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 3e-14 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 4e-06 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 3e-14 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 7e-09 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 4e-14 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 2e-06 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 4e-13 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 3e-06 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 6e-13 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 4e-07 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 7e-13 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 6e-06 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 1e-12 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 2e-12 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 2e-06 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 3e-11 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 8e-08 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 4e-11 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 8e-06 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 8e-11 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 4e-06 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 1e-10 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 4e-05 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 2e-10 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 6e-05 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 4e-10 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 2e-04 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 6e-10 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 8e-10 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 1e-09 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 4e-09 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 5e-09 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 6e-09 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 1e-08 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 7e-04 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 3e-08 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 3e-08 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 4e-08 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 6e-04 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 4e-08 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 6e-04 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 7e-08 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 8e-08 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 1e-07 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 3e-04 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 7e-07 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 3e-06 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-05 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 3e-04 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 4e-04 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 9e-05 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 4e-04 |
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 6e-24
Identities = 183/967 (18%), Positives = 358/967 (37%), Gaps = 166/967 (17%)
Query: 386 IISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYI 445
++ S+G S + G A + + +I + SI+ S +G + + N +
Sbjct: 334 VLIGAFSVGQASPNIEAFANARGAAYEVFK--IIDNKPSIDSFSK--SGHKPDNIQGN-L 388
Query: 446 EFSGVKVVTPT-GNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
EF + P+ V + + L LKV+ G + + G +G GKS+ +++ L+ + G ++
Sbjct: 389 EFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVS 448
Query: 504 KPGVG-SDLN-----KEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELL 555
G +N + I V Q P T+ + + Y + E+E + +
Sbjct: 449 IDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIE--------KAV 500
Query: 556 KNVDLEYLLDRYPP-------EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
K + + + P E+ G +LS G++QR+ +AR PK +LDE TSA
Sbjct: 501 KEANAYDFIMKLPHQFDTLVGER----GAQLSGGQKQRIAIARALVRNPKILLLDEATSA 556
Query: 609 VTTDMEER-FCAKVRAM-GTSCITISHRPALVAFHDVVLSLDGEGEWRV-----HD---K 658
+ T+ E A +A G + I I+HR + V DV+ D G + HD +
Sbjct: 557 LDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFD-GG--VIVEQGNHDELMR 613
Query: 659 RDG--SSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAAS 716
G +V + ++ +++K + + + S
Sbjct: 614 EKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHD 673
Query: 717 PIADHNVPLPVFPQLKSAP--RILPLRVADMFKVLVPTVFDK-QGAQLLAVAFLVVSRTW 773
+ + + A RIL L + +V G A + +
Sbjct: 674 QDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVI------ 727
Query: 774 ISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRH-LTARLALGWRIR 832
S + Q+ ++ L+ + + SFI ++ + R
Sbjct: 728 FSKVVGVFTNGGPPETQRQN-SNLFSLLFLIL---GIISFITFFLQGFTFGKAGEILTKR 783
Query: 833 MTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKL-----------TTDLSGLVT 880
+ + KS LR++ S++ ++ ++ R+ +D ++ +++ L T
Sbjct: 784 LRYMVFKSMLRQDVSWFDDPKNTTGALTT--RLANDAAQVKGATGSRLAVIFQNIANLGT 841
Query: 881 GMVKPSVDI-LWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGT 939
G++ I L + W++ L + + ++ G + G +++LEG+
Sbjct: 842 GII-----ISLIYGWQL-TL-----LLLAIVPIIAIAGVVEMKM-LSGQALKDKKELEGS 889
Query: 940 FRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQL 999
+ E + +V RE+ + L +KK +FGI F Q
Sbjct: 890 GKIATEAIENF-RTVVSLT---REQKFETMYAQSLQIPYRNAMKKAHVFGIT--FSFTQA 943
Query: 1000 PHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLA-SVVSQSFLAFGDILELHRKFVE 1058
++ + + LV+ Q + L S + +A G + + +
Sbjct: 944 MMYFSYAAAFRFGAY------LVT-QQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAK 996
Query: 1059 LSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS---QKLL 1115
+ + I + E EI S + ++ FS + P+ +L
Sbjct: 997 ATVSASHIIRIIEK-------TPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVL 1049
Query: 1116 ARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAG-SG 1171
+ L+ E+ G++L + G +G GKS+V ++L + ++GS+ K + ++ + +
Sbjct: 1050 -QGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQ 1108
Query: 1172 CGIFYVPQRPYTCLGTLRDQIIY-----PLSREEAELRALKLHGKGEKLVDTTNILD--- 1223
GI V Q P ++ + I Y +S EE RA K NI
Sbjct: 1109 LGI--VSQEPILFDCSIAENIAYGDNSRVVSYEEIV-RAAKE----------ANIHQFID 1155
Query: 1224 ---SYLKTIL--EGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGI 1278
T + +G +LS G G++QR+ +AR +P +
Sbjct: 1156 SLPDKYNTRVGDKGTQLS--------G-------------GQKQRIAIARALVRQPHILL 1194
Query: 1279 LDECTNA 1285
LDE T+A
Sbjct: 1195 LDEATSA 1201
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 5e-13
Identities = 105/537 (19%), Positives = 197/537 (36%), Gaps = 120/537 (22%)
Query: 151 ILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVD------GRIT 204
I+ T L+ + R F++M +S D G +T
Sbjct: 760 IISFITFFLQGFTFGKAGEILTKRLRY--------MVFKSMLRQDVSWFDDPKNTTGALT 811
Query: 205 HPEQRLASDVPRFCSELSELVQDDL-----------TAVTDGLLYTWRL---CSYASPKY 250
RLA+D +++ L T + L+Y W+L P
Sbjct: 812 ---TRLAND----AAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVP-- 862
Query: 251 VFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEE 310
+A V+ M+ + K + ++ E RT + E K
Sbjct: 863 -IIAIAGVVEM-KMLSGQALKDKKELEGSGKIATEAI---ENFRT----VVSLTREQK-- 911
Query: 311 SHIQQKF-KALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTST 369
+ + ++L R + FG+ F + + A F G
Sbjct: 912 --FETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAA-----FRFG-------- 956
Query: 370 LGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHE--------LMVISR 421
A +++ ++ + + + ++S +A + + +I +
Sbjct: 957 ---AYLVTQQLMTFE---NVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEK 1010
Query: 422 ELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT-GNVLV-ENLTLKVEPGSNLLITGP 479
I+ S G + E N ++FSGV PT ++ V + L+L+V+ G L + G
Sbjct: 1011 TPEIDSYST--QGLKPNMLEGN-VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGS 1067
Query: 480 NGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLN-----KEIFYVPQRPYTAVGTLRDQL 533
+G GKS++ ++L + ++G + G LN ++ V Q P ++ + +
Sbjct: 1068 SGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENI 1127
Query: 534 IY----PLTSDQEVEPLTHGGMVELLKNVDL----EYLLDRYPPEKEI-NWGDELSLGEQ 584
Y + S +E+ K ++ + L D+Y + + G +LS G++
Sbjct: 1128 AYGDNSRVVSYEEIV--------RAAKEANIHQFIDSLPDKY--NTRVGDKGTQLSGGQK 1177
Query: 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV------RAM-GTSCITISHR 634
QR+ +AR +P +LDE TSA+ T+ E KV +A G +CI I+HR
Sbjct: 1178 QRIAIARALVRQPHILLLDEATSALDTESE-----KVVQEALDKAREGRTCIVIAHR 1229
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 106/534 (19%), Positives = 193/534 (36%), Gaps = 133/534 (24%)
Query: 801 IGVSVLQSAASSFIAPSIRHLTA-RLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSI 858
IG VL ++I S L A R +IR Q + + + ++
Sbjct: 117 IGAGVL---IVAYIQVSFWCLAAGRQIH--KIR--QKFFHAIMNQEIGWFD----VHDVG 165
Query: 859 DADQRITHDLEK---------------LTTDLSGLVTGMVKPSVDILWFTWRMKALTGQR 903
+ + R+T D+ K + T G + G W++ +
Sbjct: 166 ELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIG--------FTRGWKLTLVI--- 214
Query: 904 GVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAE-------SVAF 956
+AI L + + ++ T +E + + A AE +V
Sbjct: 215 -LAISPVLGLSAGIWAKILSS----FTDKELH-------AYAKAGAVAEEVLAAIRTVIA 262
Query: 957 FGGGAREKAMIESRFRELLEHSLLL-LKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEH 1015
FGG +E R+ LE + L +KK I L ++ L+ Y
Sbjct: 263 FGGQKKE----LERYNNNLEEAKRLGIKKAITANISMGAA--FLLIYASYALAFWY---- 312
Query: 1016 KGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDA 1075
G ++S + + L SV+ +F + G F G +F++ +D
Sbjct: 313 -GTSLVISKEYSIGQVLTVFFSVLIGAF-SVGQASPNIEAFANARGAAYEVFKI---IDN 367
Query: 1076 AQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS---QKLLARQLTFEIVPGKSLLVT 1132
+P I S+ + Q ++ F + PS ++L + L ++ G+++ +
Sbjct: 368 -KP---SIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQIL-KGLNLKVKSGQTVALV 422
Query: 1133 GPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDE-------EAGSGCGIFYVPQRPYTCL 1185
G +G GKS+ ++++ L+ + G ++ Q I E I V Q P
Sbjct: 423 GNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI-----IGVVSQEPVLFA 477
Query: 1186 GTLRDQIIY---PLSREEAELRALKL---HGKGEKLVD--TTNILDSYLKTILEGVRLSY 1237
T+ + I Y ++ +E E +A+K + KL T + + G +LS
Sbjct: 478 TTIAENIRYGREDVTMDEIE-KAVKEANAYDFIMKLPHQFDTLVGER-------GAQLS- 528
Query: 1238 LLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVE 1291
G G++QR+ +AR PK +LDE T+A +D E
Sbjct: 529 -------G-------------GQKQRIAIARALVRNPKILLLDEATSA--LDTE 560
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 4e-19
Identities = 63/319 (19%), Positives = 107/319 (33%), Gaps = 75/319 (23%)
Query: 373 AKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHEL-MVISRELSIEDKSPQ 431
AK + L + VI+ L L D IH + S +
Sbjct: 178 AKAIRELLKNKYVIVV-----------DHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAA 226
Query: 432 RNGSRNY----------------------------FSEANYIEFSGVKVVTPTGNVLVEN 463
R G N+ S+ + K++ G+ +
Sbjct: 227 RVGINNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVV 286
Query: 464 LTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR-- 521
+ + G + I GPNG GK++ R+L G G + + + Y PQR
Sbjct: 287 DNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------QILSYKPQRIF 340
Query: 522 --PYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDE 578
V L + L++ E+ K ++L LL+ ++
Sbjct: 341 PNYDGTVQQYLENASKDALSTSSWF-------FEEVTKRLNLHRLLESNV--------ND 385
Query: 579 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF-CAKV-----RAMGTSCITIS 632
LS GE Q+L +A + +LD+ +S + D+EER+ AK R I
Sbjct: 386 LSGGELQKLYIAATLAKEADLYVLDQPSSYL--DVEERYIVAKAIKRVTRERKAVTFIID 443
Query: 633 HRPALVAFH-DVVLSLDGE 650
H ++ + D ++ GE
Sbjct: 444 HDLSIHDYIADRIIVFKGE 462
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 3e-13
Identities = 36/204 (17%), Positives = 80/204 (39%), Gaps = 33/204 (16%)
Query: 468 VEPGSNLLITGPNGSGKSSLFRVL-GGLWPLVSGHIAKPGVGSDLNK----EIFYVPQRP 522
+ + L + G NG GK+++ ++L G + P +K G L + EI+ +
Sbjct: 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKEL 81
Query: 523 YTAVGTLRDQLIYPLTSDQEVEPLTHGGM---------VELLKNVDLEYLLDRYPPEKEI 573
Y+ + ++ Y + + ++ + + E+ + +++ L ++
Sbjct: 82 YSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDA----- 136
Query: 574 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM------GTS 627
+ LS G QRL +A + I D+ +S + D+ ER +
Sbjct: 137 ---NILSGGGLQRLLVAASLLREADVYIFDQPSSYL--DVRER--MNMAKAIRELLKNKY 189
Query: 628 CITISHRPALVA-FHDVVLSLDGE 650
I + H ++ D++ + GE
Sbjct: 190 VIVVDHDLIVLDYLTDLIHIIYGE 213
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 2e-10
Identities = 49/280 (17%), Positives = 95/280 (33%), Gaps = 65/280 (23%)
Query: 1038 VVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQ 1097
VS+S+ A I + ++ R E++ +L D ++ KW
Sbjct: 219 RVSKSYAARVGINNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIK- 277
Query: 1098 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSL 1157
+ +L + E G+ + + GPNG GK++ R+L G GS+
Sbjct: 278 -KLGDFQLVVDN-----------GEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSV 325
Query: 1158 TKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVD 1217
T Q + + + Q I+P + D
Sbjct: 326 TPEKQIL----------------------SYKPQRIFPNYDGTVQQYL------ENASKD 357
Query: 1218 TTNILDSYLKTILEGVRLSYLLERE--EVGWDANLNWEDILSLGEQQRLGMARLFFHKPK 1275
+ + + + + + L LLE + LS GE Q+L +A +
Sbjct: 358 ALSTSSWFFEEVTKRLNLHRLLESNVND------------LSGGELQKLYIAATLAKEAD 405
Query: 1276 FGILDECTNATSVDVEEQ------LYRLAKDMGIT--FVT 1307
+LD+ ++ +DVEE+ + R+ ++ +
Sbjct: 406 LYVLDQPSSY--LDVEERYIVAKAIKRVTRERKAVTFIID 443
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 6e-08
Identities = 37/192 (19%), Positives = 69/192 (35%), Gaps = 30/192 (15%)
Query: 1125 PGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT-KPSQHIDEEAGSGCGIFYVPQRPYT 1183
L V G NG GK++V ++L G G K + + G I+ + Y+
Sbjct: 24 NNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYS 83
Query: 1184 CLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREE 1243
+ +I + E + L G +++ + + E + ++ L +
Sbjct: 84 NELKIVHKI------QYVEYASKFLKGTVNEILTKIDERG-KKDEVKELLNMTNLWNK-- 134
Query: 1244 VGWDANLNWEDI--LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQ------LY 1295
D LS G QRL +A + I D+ ++ +DV E+ +
Sbjct: 135 ----------DANILSGGGLQRLLVAASLLREADVYIFDQPSSY--LDVRERMNMAKAIR 182
Query: 1296 RLAKDMGITFVT 1307
L K+ + V
Sbjct: 183 ELLKNKYVIVVD 194
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 1e-18
Identities = 38/246 (15%), Positives = 87/246 (35%), Gaps = 29/246 (11%)
Query: 413 IHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGS 472
I + R +++ + S + + +K G+ ++ +
Sbjct: 322 IPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKK--TQGDFVLNVEEGEFSDSE 379
Query: 473 NLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQ 532
L++ G NG+GK++L ++L G G S ++I + +
Sbjct: 380 ILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQL--FFKK 437
Query: 533 LIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592
+ + Q +++K + ++ ++D+ LS GE QR+ +
Sbjct: 438 IRGQFLNPQFQT--------DVVKPLRIDDIIDQEV--------QHLSGGELQRVAIVLA 481
Query: 593 FYHKPKFAILDECTSAVTTDMEERF-CAKV-----RAMGTSCITISHRPALVAFH-DVVL 645
++DE ++ + D E+R C+KV + + H + + D V+
Sbjct: 482 LGIPADIYLIDEPSAYL--DSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVI 539
Query: 646 SLDGEG 651
+G
Sbjct: 540 VFEGIP 545
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 7e-15
Identities = 43/220 (19%), Positives = 72/220 (32%), Gaps = 37/220 (16%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV--------- 507
N + PG L + G NG GKS+ ++L G G P
Sbjct: 89 ANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFR 148
Query: 508 GSDL-NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMV------------EL 554
GS+L N + + I P V+ G ++
Sbjct: 149 GSELQNYFTKMLEDDIKAIIKPQYVDNI-PRAIKGPVQ--KVGELLKLRMEKSPEDVKRY 205
Query: 555 LKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA--VTTD 612
+K + LE +L R ++LS GE QR + + + DE +S V
Sbjct: 206 IKILQLENVLKRDI--------EKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQR 257
Query: 613 ME-ERFCAKVRAMGTSCITISHRPALVAFH-DVVLSLDGE 650
+ + + A I + H +++ + D V + G
Sbjct: 258 LNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGV 297
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 7e-09
Identities = 32/199 (16%), Positives = 66/199 (33%), Gaps = 58/199 (29%)
Query: 1121 FEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQR 1180
E + L++ G NG+GK+++ ++L G G + PQ+
Sbjct: 373 GEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLN-----------VSMKPQK 421
Query: 1181 PYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKT-ILEGVRLSYL 1238
GT+R + + L+ +T +++ +R+ +
Sbjct: 422 IAPKFPGTVRQLFFKKIRGQ---------------------FLNPQFQTDVVKPLRIDDI 460
Query: 1239 LERE--EVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQ--- 1293
+++E LS GE QR+ + ++DE + +D E++
Sbjct: 461 IDQEVQH------------LSGGELQRVAIVLALGIPADIYLIDEPSAY--LDSEQRIIC 506
Query: 1294 ---LYRLAKDMGIT--FVT 1307
+ R T V
Sbjct: 507 SKVIRRFILHNKKTAFIVE 525
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 33/194 (17%), Positives = 60/194 (30%), Gaps = 53/194 (27%)
Query: 1121 FEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKP---------------SQHID 1165
PG+ L + G NG GKS+ ++L G G P +
Sbjct: 98 PTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFT 157
Query: 1166 EEAGSGCGIFYVPQR----PYTCLGTLRDQI-IYPLSREEAELRALKLHGKGEKLVDTTN 1220
+ PQ P G ++ + L E++ + K++ N
Sbjct: 158 KMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRY----IKILQLEN 213
Query: 1221 ILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILD 1280
+L ++ LS GE QR + + + D
Sbjct: 214 VLKRDIEK---------------------------LSGGELQRFAIGMSCVQEADVYMFD 246
Query: 1281 ECTNATSVDVEEQL 1294
E + + +DV+++L
Sbjct: 247 EPS--SYLDVKQRL 258
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 4e-18
Identities = 48/200 (24%), Positives = 76/200 (38%), Gaps = 29/200 (14%)
Query: 445 IEFSGVKVV---TPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
I+ V + +EN+ L+V G ++I GPNGSGK++L R + GL P SG+
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLP-YSGN 59
Query: 502 IAKPGVG-SDLNKEIFYVPQRP--YTAVGTLRDQLIYPL----TSDQEVEPLTHGGMVEL 554
I G+ + I Y P Y T+ D + E+
Sbjct: 60 IFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFL--------EM 111
Query: 555 LKNVDL-EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 613
LK + L E +L R +LS G+ + + +P+ LDE V
Sbjct: 112 LKALKLGEEILRRKL--------YKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR 163
Query: 614 EERFCAKVRAMGTSCITISH 633
++ G I ++H
Sbjct: 164 RHVISRYIKEYGKEGILVTH 183
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 39/208 (18%), Positives = 66/208 (31%), Gaps = 50/208 (24%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCG 1173
+ E+ G+ +++ GPNGSGK+++ R + GL P SG++ + I
Sbjct: 22 ENINLEV-NGEKVIILGPNGSGKTTLLRAISGLLPY-SGNIFINGMEVRKIRNYIR---Y 76
Query: 1174 IFYVPQRPYTCLGTLRDQIIYPL-----SREEAELRALKLHGKGEKLVDTTNILDSYLKT 1228
+P+ Y T+ D + R+ LK GE++ L L
Sbjct: 77 STNLPEA-YEIGVTVNDIVYLYEELKGLDRDLFL-EMLKALKLGEEI------LRRKLYK 128
Query: 1229 ILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSV 1288
LS G+ + + +P+ LDE
Sbjct: 129 ---------------------------LSAGQSVLVRTSLALASQPEIVGLDEPFENVDA 161
Query: 1289 DVEEQLYRLAKDMGIT--FVTSSQRPAL 1314
+ R K+ G VT
Sbjct: 162 ARRHVISRYIKEYGKEGILVTHELDMLN 189
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 1e-17
Identities = 44/228 (19%), Positives = 90/228 (39%), Gaps = 31/228 (13%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA- 503
I+ + + G +++ ++ ++ G ++ G NG+GK++L +L P SG +
Sbjct: 22 IQLDQIGRMK-QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNL 80
Query: 504 ---KPGVGS----DLNKEIFYVPQR---PYTAVGTLRD----QLIYPLTSDQEVEPLTHG 549
PG + + I +V + + D + Q+++
Sbjct: 81 FGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRN 140
Query: 550 GMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
+LLK V + +Y LS GE+QR+ +AR +P+ ILDE + +
Sbjct: 141 EAHQLLKLVGMSAKAQQYIG--------YLSTGEKQRVMIARALMGQPQVLILDEPAAGL 192
Query: 610 TTDMEERFCAKVRAM-----GTSCITISHRP--ALVAFHDVVLSLDGE 650
E + + ++ + I ++H F ++L DG+
Sbjct: 193 DFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQ 240
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 7e-08
Identities = 40/219 (18%), Positives = 75/219 (34%), Gaps = 64/219 (29%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT-------KPSQHIDEEAG 1169
++++++I G ++ G NG+GK+++ +L P SG++ K +
Sbjct: 38 KKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97
Query: 1170 SGCGIFYVPQR-------PYTCLGT----LRDQI-IYPLSREEAELRALKLHGKGEKLVD 1217
I +V + I +Y +E A +L
Sbjct: 98 H---IGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQL--------- 145
Query: 1218 TTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFG 1277
L+ V +S ++ LS GE+QR+ +AR +P+
Sbjct: 146 ------------LKLVGMSAKAQQ---------YIGY-LSTGEKQRVMIARALMGQPQVL 183
Query: 1278 ILDECTNATSVDVE------EQLYRLAKD---MGITFVT 1307
ILDE +D L L+ + + +VT
Sbjct: 184 ILDEPAAG--LDFIARESLLSILDSLSDSYPTLAMIYVT 220
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 2e-17
Identities = 47/240 (19%), Positives = 91/240 (37%), Gaps = 31/240 (12%)
Query: 420 SRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGP 479
+ + + + ++V G+ +E +++ G + I GP
Sbjct: 261 DENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGP 320
Query: 480 NGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQL-IYPLT 538
NG GK++ ++L G+ G I + + + Y PQ + +Y L
Sbjct: 321 NGIGKTTFVKMLAGVEEPTEGKI-------EWDLTVAYKPQY-----IKADYEGTVYELL 368
Query: 539 SDQEVEPLTHGGMV-ELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597
S + L ELLK + + L DR +ELS GE QR+ +A
Sbjct: 369 SKIDASKLNSNFYKTELLKPLGIIDLYDREV--------NELSGGELQRVAIAATLLRDA 420
Query: 598 KFAILDECTSAVTTDMEERF-CAKV-----RAMGTSCITISHRPALV-AFHDVVLSLDGE 650
+LDE ++ + D+E+R ++ + + + H ++ D ++ +GE
Sbjct: 421 DIYLLDEPSAYL--DVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGE 478
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 3e-15
Identities = 54/217 (24%), Positives = 88/217 (40%), Gaps = 38/217 (17%)
Query: 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP--LVSGHIAKPGV-----GSD 510
N V V+ G + I GPNG+GKS+ ++L G L + + GV G++
Sbjct: 34 NAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNE 93
Query: 511 L--------NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTH----GGMVELLKNV 558
L N EI V + Y LI + +E L G + E++K +
Sbjct: 94 LQNYFEKLKNGEIRPVVKPQYVD-------LIPKAVKGKVIELLKKADETGKLEEVVKAL 146
Query: 559 DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA--VTTDME-E 615
+LE +L+R LS GE QR+ +A F DE +S + +
Sbjct: 147 ELENVLEREI--------QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAA 198
Query: 616 RFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGEG 651
R ++ G S + + H A++ D++ + GE
Sbjct: 199 RAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEP 235
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 6e-08
Identities = 36/205 (17%), Positives = 68/205 (33%), Gaps = 49/205 (23%)
Query: 1121 FEIVPGKSLLVTGPNGSGKSSVFRVLRG-LWPVVSGSLTKPSQHIDEEAGS--------- 1170
+ G + + GPNG+GKS+ ++L G L P + G I G+
Sbjct: 42 PVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKL 101
Query: 1171 -GCGIFYVPQRPYTCL--GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLK 1227
I V + Y L ++ ++I L + + + ++ K ++ N+L+ ++
Sbjct: 102 KNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEV----VKALELENVLEREIQ 157
Query: 1228 TILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATS 1287
LS GE QR+ +A F DE ++
Sbjct: 158 H---------------------------LSGGELQRVAIAAALLRNATFYFFDEPSSYLD 190
Query: 1288 VDVEEQLYRL-----AKDMGITFVT 1307
+ R + + V
Sbjct: 191 IRQRLNAARAIRRLSEEGKSVLVVE 215
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 2e-07
Identities = 39/199 (19%), Positives = 69/199 (34%), Gaps = 56/199 (28%)
Query: 1120 TFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 1179
EI G+ + + GPNG GK++ ++L G+ G + + Y PQ
Sbjct: 306 PGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLT-----------VAYKPQ 354
Query: 1180 RPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYL 1238
GT+ +++ + + Y +L+ + + L
Sbjct: 355 YIKADYEGTVY-ELLSKIDASKLNSNF-------------------YKTELLKPLGIIDL 394
Query: 1239 LERE--EVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQ--- 1293
+RE E LS GE QR+ +A +LDE + +DVE++
Sbjct: 395 YDREVNE------------LSGGELQRVAIAATLLRDADIYLLDEPSAY--LDVEQRLAV 440
Query: 1294 ---LYRLAKDMGIT--FVT 1307
+ L + T V
Sbjct: 441 SRAIRHLMEKNEKTALVVE 459
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 2e-17
Identities = 44/206 (21%), Positives = 83/206 (40%), Gaps = 37/206 (17%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
G+ +E ++ G + I GPNG GK++ ++L G+ G + + + +
Sbjct: 368 GSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV-------EWDLTVA 420
Query: 517 YVPQR----PYTAVGTLRDQLIYP-LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEK 571
Y PQ V L ++ L S+ ELLK + + L DR
Sbjct: 421 YKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKT--------ELLKPLGIIDLYDRNV--- 469
Query: 572 EINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF-CAKV-----RAMG 625
++LS GE QR+ +A +LDE ++ + D+E+R ++
Sbjct: 470 -----EDLSGGELQRVAIAATLLRDADIYLLDEPSAYL--DVEQRLAVSRAIRHLMEKNE 522
Query: 626 TSCITISHRPALV-AFHDVVLSLDGE 650
+ + + H ++ D ++ +GE
Sbjct: 523 KTALVVEHDVLMIDYVSDRLIVFEGE 548
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 1e-15
Identities = 47/205 (22%), Positives = 82/205 (40%), Gaps = 37/205 (18%)
Query: 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL-------WPLVSGHIAKPGVGSD 510
N V V+ G + I GPNG+GK++ ++L G ++ + G++
Sbjct: 104 NAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNE 163
Query: 511 L--------NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTH----GGMVELLKNV 558
L N EI V + Y L+ + E L G E++K +
Sbjct: 164 LQNYFERLKNGEIRPVVKPQYVD-------LLPKAVKGKVRELLKKVDEVGKFEEVVKEL 216
Query: 559 DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA--VTTDME-E 615
+LE +LDR +LS GE QR+ +A K F DE +S + ++
Sbjct: 217 ELENVLDREL--------HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVA 268
Query: 616 RFCAKVRAMGTSCITISHRPALVAF 640
R ++ G + + + H A++ +
Sbjct: 269 RVIRRLANEGKAVLVVEHDLAVLDY 293
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 2e-08
Identities = 38/215 (17%), Positives = 68/215 (31%), Gaps = 49/215 (22%)
Query: 1111 SQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP------VVSGSLTKPSQHI 1164
+ G + + GPNG+GK++ ++L G S +
Sbjct: 102 GVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG 161
Query: 1165 DE-----EAGSGCGIFYVPQRPYTCL--GTLRDQIIYPLSREEAELRALKLHGKGEKLVD 1217
+E E I V + Y L ++ ++ L + + + ++ K ++
Sbjct: 162 NELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEV----VKELE 217
Query: 1218 TTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFG 1277
N+LD L LS GE QR+ +A K F
Sbjct: 218 LENVLDRELHQ---------------------------LSGGELQRVAIAAALLRKAHFY 250
Query: 1278 ILDECTNA----TSVDVEEQLYRLAK-DMGITFVT 1307
DE ++ + V + RLA + V
Sbjct: 251 FFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVE 285
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 3e-08
Identities = 39/198 (19%), Positives = 70/198 (35%), Gaps = 52/198 (26%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 1178
EI G+ + + GPNG GK++ ++L G+ G + + Y P
Sbjct: 375 EPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT-----------VAYKP 423
Query: 1179 QRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSY 1237
Q GT+ +++ K+ + + Y +L+ + +
Sbjct: 424 QYIKAEYEGTVY-ELL-------------------SKIDSSKLNSNFYKTELLKPLGIID 463
Query: 1238 LLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQ---- 1293
L +R V LS GE QR+ +A +LDE + +DVE++
Sbjct: 464 LYDR-NVE---------DLSGGELQRVAIAATLLRDADIYLLDEPSAY--LDVEQRLAVS 511
Query: 1294 --LYRLAKDMGIT--FVT 1307
+ L + T V
Sbjct: 512 RAIRHLMEKNEKTALVVE 529
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 2e-17
Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 51/228 (22%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
+ + N L + L + G L + G NG GKS+L +L G+ + G I
Sbjct: 5 LSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI-- 62
Query: 505 PGVGSDLNKEIFYVPQR-----PYTA-----------VGTLRDQLIYPLTSDQEVEPLTH 548
++ + I +VPQ Y+ + T P + D +V
Sbjct: 63 -----EVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAK----PKSHDYQV----- 108
Query: 549 GGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
++ L ++L +L R LS G++Q + +AR + K +LDE TSA
Sbjct: 109 --AMQALDYLNLTHLAKREF--------TSLSGGQRQLILIARAIASECKLILLDEPTSA 158
Query: 609 VTTDM--EERFCAKV----RAMGTSCITISHRPALVA-FHDVVLSLDG 649
+ D+ ++ + + ++ + + +H+P V + L L+
Sbjct: 159 L--DLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNK 204
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 3e-09
Identities = 48/212 (22%), Positives = 80/212 (37%), Gaps = 52/212 (24%)
Query: 1110 PSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAG 1169
++ L +QL F++ G L V G NG GKS++ +L G+ + G + E
Sbjct: 15 QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI--------EVYQ 66
Query: 1170 SGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKG--------EKLVDTTNI 1221
S I +VPQ + S + L H ++
Sbjct: 67 S---IGFVPQFF---------SSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAM---- 110
Query: 1222 LDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDE 1281
L+ + L++L +RE LS G++Q + +AR + K +LDE
Sbjct: 111 ------QALDYLNLTHLAKRE----------FTSLSGGQRQLILIARAIASECKLILLDE 154
Query: 1282 CTN----ATSVDVEEQLYRLAKDMGITFVTSS 1309
T+ A V L LA+ +T V ++
Sbjct: 155 PTSALDLANQDIVLSLLIDLAQSQNMTVVFTT 186
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 8e-15
Identities = 33/162 (20%), Positives = 72/162 (44%), Gaps = 27/162 (16%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV-GSDLNKEI 515
++E +T+ +E G+ + GPNG GK++L + + + G I GV + + +I
Sbjct: 21 DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKI 80
Query: 516 FYVPQRP--YTAVGTLRDQL-----IYPLTSDQE-VEPLTHGGMVELLKNVDLEYLLDRY 567
F++P+ + ++ D L +Y + ++ + + L++V++ L +
Sbjct: 81 FFLPEEIIVPRKI-SVEDYLKAVASLYGVKVNKNEIM--------DALESVEVLDLKKKL 131
Query: 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
ELS G +R+ +A + +LD+ A+
Sbjct: 132 ---------GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAI 164
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 59.4 bits (145), Expect = 7e-10
Identities = 36/199 (18%), Positives = 77/199 (38%), Gaps = 43/199 (21%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 1178
+T I G + GPNG GK+++ + + + G + I + G IF++P
Sbjct: 28 ITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGK---IFFLP 84
Query: 1179 QRP--YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS 1236
+ + ++ D + A L +K + + + LE V +
Sbjct: 85 EEIIVPRKI-SVEDYLKA-----VASLYGVK-------------VNKNEIMDALESVEVL 125
Query: 1237 YLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVE----- 1291
L ++++G LS G +R+ +A + +LD+ ++D +
Sbjct: 126 DL--KKKLG---------ELSQGTIRRVQLASTLLVNAEIYVLDDPV--VAIDEDSKHKV 172
Query: 1292 -EQLYRLAKDMGITFVTSS 1309
+ + + K+ GI ++S
Sbjct: 173 LKSILEILKEKGIVIISSR 191
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 78.4 bits (192), Expect = 1e-14
Identities = 110/730 (15%), Positives = 218/730 (29%), Gaps = 224/730 (30%)
Query: 309 EESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTS 368
E Q ++K + D++ +QD L +I+ +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK------DAVSG 63
Query: 369 TLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGY---ADRIHELMVISRELSI 425
TL ++ L ++ F R+N Y I
Sbjct: 64 TL---RLFWTLLSKQEEMVQKFVE------EVLRIN----YKFLMSPIKT---------- 100
Query: 426 EDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNV----LVENLT---LKVEPGSNLLITG 478
E + P +R Y + + + ++ +V NV L L++ P N+LI G
Sbjct: 101 EQRQPSMM-TRMYIEQRDRL-YNDNQVFAK-YNVSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 479 PNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT 538
GSGK+ + V ++ +IF++ + +
Sbjct: 158 VLGSGKTW----------VALDVCLSYKVQCKMDFKIFWL------NLKNCN-------S 194
Query: 539 SDQEVEPLTHGGMVELLKNVDLEY--LLDR-YPPEKEINWGDELSLGEQQRLGMARLFYH 595
+ +E L +LL +D + D + I+ Q L RL
Sbjct: 195 PETVLEMLQ-----KLLYQIDPNWTSRSDHSSNIKLRIHS-------IQAEL--RRLLKS 240
Query: 596 KP-KFA--ILDE-CTSAVTTDMEERFCAKVRAMGTSC-ITISHRPALVAFHDVVLSLDGE 650
KP + +L + A SC I ++ R V D +
Sbjct: 241 KPYENCLLVLLNVQNAKA-----------WNAFNLSCKILLTTRFKQVT--DFL------ 281
Query: 651 GEWRVHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVS 710
++ T ++ + T + ++ K + + + Q
Sbjct: 282 ----------SAATTTHISLDHHSMTLTPDEVKSL-----L--LK----YLDCRPQD--- 317
Query: 711 EVIAASPIADHNVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVS 770
LP + P R++ + +
Sbjct: 318 --------------LP-----REVLTTNPRRLS-II-----------AESI--------- 337
Query: 771 R----TWI------SDRIASLNGTTVKYVLEQD--KASFVRLIGVSVLQSAASSFIAPSI 818
R TW D++ ++ +++ VLE + F RL SV S+ I P
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLN-VLEPAEYRKMFDRL---SVFPP--SAHI-P-- 388
Query: 819 RHLTARLALGWR-------IRMTQHLLKSYL----RKNSFYKVFN--MSSKSIDADQRIT 865
T L+L W + + L K L K S + + + K ++
Sbjct: 389 ---TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 866 HD--LEKLTTDLSGLVTGMVKPSVDILWFT---WRMKALTGQRGVAILYAYMLLGLGFLR 920
H ++ + ++ P +D +++ +K + L+ + L FL
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI-EHPERMTLFRMVFLDFRFLE 504
Query: 921 -------SVTPEFGDLTSREQQLEGTFRFM---HERLRAHAESVAFFGGGAREKAMIESR 970
+ G + + QQL+ ++ + ++ F E +I S+
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN-LICSK 563
Query: 971 FRELLEHSLL 980
+ +LL +L+
Sbjct: 564 YTDLLRIALM 573
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 74.5 bits (182), Expect = 2e-13
Identities = 76/432 (17%), Positives = 130/432 (30%), Gaps = 119/432 (27%)
Query: 963 EKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALV 1022
E + +++++L +D+F K + ++++
Sbjct: 10 ETGEHQYQYKDILSV---FEDA-----FVDNFDCKDVQDMP---------------KSIL 46
Query: 1023 STQGELAHALRFLASVVSQSFLAFGDILELHRK-----FVELSGGINRIFELEEL-LDAA 1076
S + E+ H + VS + F L ++ FVE IN F + + +
Sbjct: 47 SKE-EIDHIIM-SKDAVSGTLRLF-WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103
Query: 1077 QPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNG 1136
QP Q Y D+ F+K ++ L RQ E+ P K++L+ G G
Sbjct: 104 QPSMMTRMYIEQR---DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 1137 SGKSS-VFRVLRGL-----------WPVVSGSLTKPSQ----------HIDEEAGSGCGI 1174
SGK+ V W + + P ID S
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 1175 FYVP----------------QRPY-TCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVD 1217
+PY CL L + + A L K L+
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN------VQNAKAWNAFNLSCK--ILLT 271
Query: 1218 T-----TNILDSYLKTILEGVRLSYLLEREEV-----GWDANLNWEDI-----------L 1256
T T+ L + T + S L +EV + + +D+ L
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCRPQDLPREVLTTNPRRL 330
Query: 1257 SL-GEQQRLGMARL-----FFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQ 1310
S+ E R G+A I++ N +++ + + F S
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF---DRLSV-FPPS-- 384
Query: 1311 RPALIPFHSLEL 1322
A IP L L
Sbjct: 385 --AHIPTILLSL 394
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 2e-07
Identities = 94/661 (14%), Positives = 185/661 (27%), Gaps = 195/661 (29%)
Query: 677 ETDRQ----SDAMAV-EQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHNVPLPVFPQL 731
ET D ++V E AFV + F Q +++ I DH +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFV---DN--FDCKDVQDMPKSILSKEEI-DHIIMSK----- 58
Query: 732 KSAPRILPLRVADMFKVLVPTVFDKQ--GAQLLAVAFLVVSRTWISDRIASLN----GTT 785
+ L T+ KQ Q L ++ ++ I + T
Sbjct: 59 ---DAVSGTLR------LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 786 VKYVLEQD----------KASFVRLIGVSVLQSAA-------------------SSFIAP 816
Y+ ++D K + RL L+ A +
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD 169
Query: 817 SIRHLTARLALG----W----RIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDL 868
+ + W + +L+ + + Y++ + D I +
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLE--MLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 869 EKLTTDLSGLVTGMVKP-SVDIL---WFTWRMKAL---------TGQRGVAILYAYMLLG 915
+ +L L+ + +L A T + V ++
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT---DFLSAA 284
Query: 916 LGFLRSVTPEFGDLTSREQQLEGTF-RFMHER---LRAHAES-----VAFFGGGARE-KA 965
S+ LT E ++ +++ R L + ++ R+ A
Sbjct: 285 TTTHISLDHHSMTLTPDE--VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 966 MIE-------SRFRELLEHSLLLLK----KK--WLFGILDDFVTKQLPHNVTWGLSLLYA 1012
+ + ++E SL +L+ +K + +P + LSL++
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA--HIPTIL---LSLIWF 397
Query: 1013 ----------MEHKGDRALVSTQGELA----HALRFLASVVSQSFLAFGDILELHRKFVE 1058
+ +LV Q + + ++ V + + LHR V+
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE------NEYALHRSIVD 451
Query: 1059 LSGGINRIFELEELLDAAQPGDDEISGS--SQHKWNSTDYQDSISFSKLDIITPSQKLLA 1116
I + F+ ++L+ P D+ S H N + F +
Sbjct: 452 -HYNIPKTFDSDDLIP---PYLDQYFYSHIGHHLKNIEHPERMTLFRMV----------- 496
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176
L F + K + + S+ L+ L FY
Sbjct: 497 -FLDFRFLEQK-IRHDSTAWNASGSILNTLQQL------------------------KFY 530
Query: 1177 VPQRPYTCLGTLRDQIIYPLSREEAELRALK--LHGKGEKLV--DTTNILDSYLKTILEG 1232
+PY C + Y E + A+ L E L+ T++L L E
Sbjct: 531 ---KPYIC----DNDPKY-----ERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578
Query: 1233 V 1233
+
Sbjct: 579 I 579
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 5e-05
Identities = 71/503 (14%), Positives = 139/503 (27%), Gaps = 144/503 (28%)
Query: 39 YLKSRFS--SKKP----DAFGHY-NGL-GDSERKPDKAVANRSNIKKANQKKGGLKSLQV 90
+L S ++P + + L D++ V +R ++ + + L L+
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV-SR--LQPYLKLRQALLELRP 149
Query: 91 LAAILLSEMGKMGARDLLALV------------GIVVLRTALSNR----LAKVQGFLF-- 132
+L+ + G + V I L N L +Q L+
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 133 ------RAAFLRRVPLFFQLISENILLCFLLSTMHSTS---------KYITGTLSLQFRK 177
R+ + L I L L S + +L +
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAE-LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268
Query: 178 IVTKLIHTRY--------FENMAYYKISHVDGRITHPE-------------QRLASDV-- 214
++T TR+ + + H +T E Q L +V
Sbjct: 269 LLT----TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 215 --PRFCSELSELVQDDLTAVTDGLLY--TWRL-----CSYA--SPK-----Y----VF-- 252
PR S ++E ++D L A D + +L S P + VF
Sbjct: 325 TNPRRLSIIAESIRDGL-ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 253 --WILAYVLG----------AGTMMRNFSPAFGKLMSKEQQLEGEYR------------- 287
I +L ++ + ++Q E
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKL---HKYSLVEKQPKESTISIPSIYLELKVKLE 440
Query: 288 ---QLHSRLRTHAESIAFYGGENKEESHIQQ-KFKALTRHMRVVLHDHWWFGMIQDFL-L 342
LH + H + ++ ++ Q + + H++ + H FL
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500
Query: 343 KYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRR 402
++L I A N L L+++ I R
Sbjct: 501 RFLEQK-----IRHDSTAWNASGSILNT-----LQQLKFYKPYICD------NDPKYERL 544
Query: 403 LNRLSGYADRIHELMVISRELSI 425
+N + + +I E ++ S+ +
Sbjct: 545 VNAILDFLPKIEENLICSKYTDL 567
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 3e-14
Identities = 51/219 (23%), Positives = 82/219 (37%), Gaps = 24/219 (10%)
Query: 445 IEFSGVKVVTPTGNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
+ + G + EN++ + PG + + G GSGKS+L L G I
Sbjct: 20 MTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQ 78
Query: 504 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLT--SDQEV-EPLTHGGMVEL 554
GV K +PQ+ + GT R L P SDQE+ + G+ +
Sbjct: 79 IDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLD-PNAAHSDQEIWKVADEVGLRSV 137
Query: 555 LKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV--TTD 612
++ LD + G LS G +Q + +AR K K +LDE ++ + T
Sbjct: 138 IEQ--FPGKLDFVLVDG----GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTY 191
Query: 613 MEERFCAKVRAMGTSC--ITISHRPALVAFHDVVLSLDG 649
R ++ C I R + D L ++
Sbjct: 192 QIIR--RTLKQAFADCTVILCEARIEAMLECDQFLVIEE 228
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 4e-06
Identities = 39/189 (20%), Positives = 66/189 (34%), Gaps = 51/189 (26%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHID---------EE 1167
++F I PG+ + + G GSGKS++ L G + ID E+
Sbjct: 38 ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQ-----IDGVSWDSITLEQ 91
Query: 1168 AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLK 1227
G+ +PQ+ + GT R + P + D +
Sbjct: 92 WRKAFGV--IPQKVFIFSGTFRKNLD-PNAAHS----------------------DQEIW 126
Query: 1228 TILEGVRLSYLLEREEVGWDANL-----NWEDILSLGEQQRLGMARLFFHKPKFGILDEC 1282
+ + V L ++E+ D L S G +Q + +AR K K +LDE
Sbjct: 127 KVADEVGLRSVIEQFPGKLDFVLVDGGCVL----SHGHKQLMCLARSVLSKAKILLLDEP 182
Query: 1283 TNATSVDVE 1291
+ +D
Sbjct: 183 S--AHLDPV 189
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 3e-14
Identities = 62/262 (23%), Positives = 106/262 (40%), Gaps = 27/262 (10%)
Query: 386 IISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYI 445
+ S S R + + + + +L+ E ++D G+ + I
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMFIDMENMFDLL--KEETEVKDLP----GAGPLRFQKGRI 54
Query: 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKP 505
EF V G +++++ V PG L + GP+G+GKS++ R+L + + SG I
Sbjct: 55 EFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRID 114
Query: 506 GVG------SDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELLKN 557
G + L I VPQ T+ D + Y + EVE +
Sbjct: 115 GQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVE--------AAAQA 166
Query: 558 VDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME 614
+ + +P G+ +LS GE+QR+ +AR P +LDE TSA+ T E
Sbjct: 167 AGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNE 226
Query: 615 ERFCAKVRAM--GTSCITISHR 634
A + + + I ++HR
Sbjct: 227 RAIQASLAKVCANRTTIVVAHR 248
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 7e-09
Identities = 49/206 (23%), Positives = 85/206 (41%), Gaps = 59/206 (28%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS----------LTKPS--QHI 1164
+ ++F ++PG++L + GP+G+GKS++ R+L + + SG +T+ S HI
Sbjct: 71 QDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI 130
Query: 1165 DEEAGSGCGIFYVPQRPYTCLGTLRDQIIY---PLSREEAE--LRALKLHGKGEKLVDTT 1219
G+ VPQ T+ D I Y +E E +A +H
Sbjct: 131 --------GV--VPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFP--- 177
Query: 1220 NILDSYLKTILE-GVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGI 1278
+ Y + E G++LS G GE+QR+ +AR P +
Sbjct: 178 ---EGYRTQVGERGLKLS--------G-------------GEKQRVAIARTILKAPGIIL 213
Query: 1279 LDECTNA----TSVDVEEQLYRLAKD 1300
LDE T+A ++ L ++ +
Sbjct: 214 LDEATSALDTSNERAIQASLAKVCAN 239
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 4e-14
Identities = 41/217 (18%), Positives = 74/217 (34%), Gaps = 44/217 (20%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV------GSD 510
+ + L+ +V G L + GPNG+GKS+L + G+ G I G +
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATK 70
Query: 511 LNKEIFYVPQRPYTAVGTLRDQLI----YPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 566
L Y+ Q+ T + + T + + ++ + L+ L R
Sbjct: 71 LALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLN--------DVAGALALDDKLGR 122
Query: 567 YPPEKEINWGDELSLGEQQRLGMAR-------LFYHKPKFAILDECTSA------VTTDM 613
++LS GE QR+ +A + +LDE ++ D
Sbjct: 123 ST--------NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALD- 173
Query: 614 EERFCAKVRAMGTSCITISHRPALVAFH-DVVLSLDG 649
+ + + G + + SH H L G
Sbjct: 174 --KILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKG 208
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 38/215 (17%), Positives = 71/215 (33%), Gaps = 53/215 (24%)
Query: 1111 SQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEE 1167
++ L+ E+ G+ L + GPNG+GKS++ + G+ GS+ +P +
Sbjct: 11 AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSAT 69
Query: 1168 AGSGCGIFYVPQRPYTCLG-TLRDQII---YPLSREEAELRALKLHGKGEKLVDTTNILD 1223
+ Y+ Q+ + + + +R E
Sbjct: 70 KLALH-RAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDV------------------ 110
Query: 1224 SYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMAR-------LFFHKPKF 1276
+ L L R + LS GE QR+ +A +
Sbjct: 111 ------AGALALDDKLGRS---TNQ-------LSGGEWQRVRLAAVVLQITPQANPAGQL 154
Query: 1277 GILDECTNATSVDVEEQLYRLAKDM---GITFVTS 1308
+LDE N+ V + L ++ + G+ V S
Sbjct: 155 LLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMS 189
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 4e-13
Identities = 94/562 (16%), Positives = 194/562 (34%), Gaps = 85/562 (15%)
Query: 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHS-TSK 165
+++ + +V+ A + + L F F +++ IL + + S
Sbjct: 28 VVSTIALVIN-AAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLSGFASS 86
Query: 166 YITGTLSLQF-----RKIVTKLIH--TRYFENMAYYKISHVDGRITHPEQRLASDVPRFC 218
Y +S R++ +H R+F+ + RIT+ +++A
Sbjct: 87 YCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQ---ESTGGLLSRITYDSEQVAGATS--- 140
Query: 219 SELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSK 278
L +V++ + + GLL L + S + ++ + S F K+
Sbjct: 141 RALVSIVREGASII--GLLT---LMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRN 195
Query: 279 EQQLEGEY-RQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMI 337
Q G L+ H + YGG+ E +++F ++ MR I
Sbjct: 196 MQTAMGHVTSSAEQMLKGHKV-VLSYGGQEVE----RKRFDKVSNSMRQQTMKLVSAQSI 250
Query: 338 QDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTL 396
D +++ + + ++ F A T G +F ++ L
Sbjct: 251 ADPVIQMIASLALFAVL---FLASVDSIRAELTPG-------------TFTVVFSAMFGL 294
Query: 397 SISSRRLNRLSGY-------ADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSG 449
+ L ++ + LM + ++ + NG ++
Sbjct: 295 MRPLKALTSVTSEFQRGMAACQTLFGLM--------DLETERDNGKYEAERVNGEVDVKD 346
Query: 450 VKVVTPTGNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG 508
V +++ + G + + G +GSGKS++ + + + SG I G
Sbjct: 347 VTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHD 406
Query: 509 ------SDLNKEIFYVPQRPYTAVGTLRDQLIY---PLTSDQEVEPLTHGGMVELLKNVD 559
++L + V Q + T+ + + Y + +++E + +
Sbjct: 407 VRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIE--------QAARQAH 458
Query: 560 LEYLLDRYPPEKEINWGDE---LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME-E 615
++ P + G+ LS G++QR+ +AR ILDE TSA+ D E E
Sbjct: 459 AMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSAL--DTESE 516
Query: 616 RF--CAKVRAM-GTSCITISHR 634
R A + + I+HR
Sbjct: 517 RAIQAALDELQKNKTVLVIAHR 538
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 3e-06
Identities = 97/517 (18%), Positives = 169/517 (32%), Gaps = 134/517 (25%)
Query: 842 LRKNSFYKVFNMSSKSIDADQ------RITHDLEKLTTDLSGLVTGMVKPSVDI------ 889
+R+ F +M + D + RIT+D E++ S + +V+ I
Sbjct: 100 MRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTL 159
Query: 890 -LWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTF-RFMHERL 947
W +W++ +L +L + + V+ F ++ Q G + L
Sbjct: 160 MFWNSWQL-SL-------VLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQML 211
Query: 948 RAHAESVAFFGGGAREKAMIESRFRELLEHSL-LLLKKKWLFGILDDFVTKQLPHNVTWG 1006
+ H +++ ++ + RF ++ +K I D + Q+ ++
Sbjct: 212 KGHKVVLSY----GGQEVERK-RFDKVSNSMRQQTMKLVSAQSIADPVI--QMIASLALF 264
Query: 1007 LSLLYAMEHKGDRALVS--TQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGI- 1063
L A ++ + T G V S F + L E G+
Sbjct: 265 AVLFLA----SVDSIRAELTPGTFT-------VVFSAMFGLMRPLKALTSVTSEFQRGMA 313
Query: 1064 --NRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLA-RQLT 1120
+F L +L G E + + ++ A ++
Sbjct: 314 ACQTLFGLMDLETERDNGKYEAE----------RVNGEVDVKDVTFTYQGKEKPALSHVS 363
Query: 1121 FEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQR 1180
F I GK++ + G +GSGKS++ + + V SGS+ +D R
Sbjct: 364 FSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSIC-----LDG----------HDVR 408
Query: 1181 PYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNIL--DSYLKTILEGVRLSYL 1238
Y L LR LV L D TI + +
Sbjct: 409 DYK-LTNLRRHF---------------------ALVSQNVHLFND----TIANNIAYAAE 442
Query: 1239 LE--REEV------------------GWDANLNWED--ILSLGEQQRLGMARLFFHKPKF 1276
E RE++ G D + E+ LS G++QR+ +AR
Sbjct: 443 GEYTREQIEQAARQAHAMEFIENMPQGLDTVIG-ENGTSLSGGQRQRVAIARALLRDAPV 501
Query: 1277 GILDECTNATS-VDVE-EQ-----LYRLAKDMGITFV 1306
ILDE ATS +D E E+ L L K+ V
Sbjct: 502 LILDE---ATSALDTESERAIQAALDELQKNK-TVLV 534
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 6e-13
Identities = 96/538 (17%), Positives = 200/538 (37%), Gaps = 79/538 (14%)
Query: 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHS-TSK 165
++A + +++ A + + L F + + ++ +L + S S
Sbjct: 28 IVAGIALILN-AASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISS 86
Query: 166 YITGTLSLQ---------FRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPR 216
Y +S + F ++ + +F+ + RIT+ +++AS
Sbjct: 87 YCISWVSGKVVMTMRRRLFGHMMG--MPVAFFDK---QSTGTLLSRITYDSEQVASSSS- 140
Query: 217 FCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLM 276
L +V++ + + GL + Y S + ++ +R S F +
Sbjct: 141 --GALITVVREGASII--GLFI---MMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSIS 193
Query: 277 SKEQQLEGEY-RQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRH-----MRVVLHD 330
Q G+ L+ H E + F GG+ E ++F ++ M++V
Sbjct: 194 KNMQNTMGQVTTSAEQMLKGHKEVLIF-GGQEVE----TKRFDKVSNKMRLQGMKMVSAS 248
Query: 331 HWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISL 389
+IQ + A++A+ ++ + A D+ T G + +I+L
Sbjct: 249 SISDPIIQ-LI-----ASLALAFVL--YAASFPSVMDSLTAG--TITVVFSS----MIAL 294
Query: 390 FQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSG 449
+ L +L+ + + R + ++ + + + G R +EF
Sbjct: 295 MRPLKSLTNVNAQFQRGMAACQTLFAIL--------DSEQEKDEGKRVIDRATGDLEFRN 346
Query: 450 VKVVTPTGNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG 508
V P V N+ LK+ G + + G +GSGKS++ ++ + + GHI G
Sbjct: 347 VTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHD 406
Query: 509 ------SDLNKEIFYVPQRPYTAVGTLRDQLIY---PLTSDQEVEPLTHGGMVELLKNVD 559
+ L ++ V Q + T+ + + Y S +++E E +
Sbjct: 407 LREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIE--------EAARMAY 458
Query: 560 LEYLLDRYPPEKEINWGDE---LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME 614
+++ + G+ LS G++QR+ +AR ILDE TSA+ T+ E
Sbjct: 459 AMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE 516
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 4e-07
Identities = 93/497 (18%), Positives = 169/497 (34%), Gaps = 122/497 (24%)
Query: 842 LRKNSFYKVFNMSSKSIDADQ------RITHDLEKLTTDLSGLVTGMVKPSVDI------ 889
+R+ F + M D RIT+D E++ + SG + +V+ I
Sbjct: 100 MRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIM 159
Query: 890 -LWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTF-RFMHERL 947
+++W+ L+ IL + +R V+ F ++ Q G + L
Sbjct: 160 MFYYSWQ---LS-----IILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQML 211
Query: 948 RAHAESVAFFGGGAREKAMIESRFRELLEHSL-LLLKKKWLFGILDDFVTKQLPHNVTWG 1006
+ H E + F ++ + RF ++ +K I D + QL ++
Sbjct: 212 KGHKEVLIF----GGQEVETK-RFDKVSNKMRLQGMKMVSASSISDPII--QLIASLALA 264
Query: 1007 LSLLYAMEHKGDRALVS--TQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGI- 1063
L A +++ T G + V S + L + G+
Sbjct: 265 FVLYAA----SFPSVMDSLTAGTIT-------VVFSSMIALMRPLKSLTNVNAQFQRGMA 313
Query: 1064 --NRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLA-RQLT 1120
+F + + G I + F + P +++ A R +
Sbjct: 314 ACQTLFAILDSEQEKDEGKRVID----------RATGDLEFRNVTFTYPGREVPALRNIN 363
Query: 1121 FEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS----------LTKPS--QHIDEEA 1168
+I GK++ + G +GSGKS++ ++ + + G T S +
Sbjct: 364 LKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV---- 419
Query: 1169 GSGCGIFYVPQRPYTCLGTLRDQIIY----PLSREEAELRALKL---HGKGEKLVD--TT 1219
+ V Q + T+ + I Y SRE+ E A ++ K+ + T
Sbjct: 420 ----AL--VSQNVHLFNDTVANNIAYARTEEYSREQIE-EAARMAYAMDFINKMDNGLDT 472
Query: 1220 NILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGIL 1279
I + GV LS G G++QR+ +AR IL
Sbjct: 473 IIGE-------NGVLLS--------G-------------GQRQRIAIARALLRDSPILIL 504
Query: 1280 DECTNATS-VDVE-EQL 1294
DE ATS +D E E+
Sbjct: 505 DE---ATSALDTESERA 518
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 69.0 bits (170), Expect = 7e-13
Identities = 50/210 (23%), Positives = 91/210 (43%), Gaps = 34/210 (16%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
+ V ++ +++ + +P S + GP+G GKS++F +L + +G I
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61
Query: 505 PGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIY---PLTSDQEVEPLTHGGMVELL 555
G + +I +V Q GT+R+ L Y +D+++ ++L
Sbjct: 62 DGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLW--------QVL 113
Query: 556 KNVDLEYLLDRYPP-------EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
++ P E+ G ++S G++QRL +AR F PK +LDE T++
Sbjct: 114 DLAFARSFVENMPDQLNTEVGER----GVKISGGQRQRLAIARAFLRNPKILMLDEATAS 169
Query: 609 VTTDME-ERFC--AKVRAM-GTSCITISHR 634
+ D E E A M G + + I+HR
Sbjct: 170 L--DSESESMVQKALDSLMKGRTTLVIAHR 197
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 48.2 bits (116), Expect = 6e-06
Identities = 53/213 (24%), Positives = 81/213 (38%), Gaps = 72/213 (33%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCG--- 1173
R ++FE P + GP+G GKS++F +L + +G +T ID G
Sbjct: 19 RDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT-----ID-------GQPI 66
Query: 1174 -----------IFYVPQRPYTCLGTLRDQIIY----PLSREEAELRALKL---HGKGEKL 1215
I +V Q GT+R+ + Y + E+ + L L E +
Sbjct: 67 DNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLW-QVLDLAFARSFVENM 125
Query: 1216 VDTTNILDSYLKTILE-GVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKP 1274
D + E GV++S G G++QRL +AR F P
Sbjct: 126 P------DQLNTEVGERGVKIS--------G-------------GQRQRLAIARAFLRNP 158
Query: 1275 KFGILDECTNATS-VDVE------EQLYRLAKD 1300
K +LDE AT+ +D E + L L K
Sbjct: 159 KILMLDE---ATASLDSESESMVQKALDSLMKG 188
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 1e-12
Identities = 73/331 (22%), Positives = 125/331 (37%), Gaps = 59/331 (17%)
Query: 346 GATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNR 405
+AV+ G + + + +++ Y ++ SL +G + + R
Sbjct: 259 MGMIAVLWF------GGVLVRNNQMEIGSIMAYTNYLMQIMFSLMM-IGNILNF---IVR 308
Query: 406 LSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLV-ENL 464
S A R+ E V++ + +IE+ + + + F V+ V +
Sbjct: 309 ASASAKRVLE--VLNEKPAIEEAD----NALALPNVEGSVSFENVEFRYFENTDPVLSGV 362
Query: 465 TLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV------GSDLNKEIFYV 518
V+PGS + + G GSGKS+L ++ L G + + DL I V
Sbjct: 363 NFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAV 422
Query: 519 PQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELLKN-------VDLEYLLDRYPP 569
PQ GT+++ L + +D E +VE K + L D
Sbjct: 423 PQETVLFSGTIKENLKWGREDATDDE--------IVEAAKIAQIHDFIISLPEGYDSRVE 474
Query: 570 EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV--TTDMEERFCAKVRAM--- 624
N S G++QRL +AR KPK ILD+CTS+V T+ ++
Sbjct: 475 RGGRN----FSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITE------KRILDGLKR 524
Query: 625 ---GTSCITISHRPALVAFHDVVLSLDGEGE 652
G + I+ + D +L L EG+
Sbjct: 525 YTKGCTTFIITQKIPTALLADKILVLH-EGK 554
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 52/206 (25%), Positives = 88/206 (42%), Gaps = 26/206 (12%)
Query: 445 IEFSGVK---VVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
IEFS V L +++ + G+ + G GSGKS++ ++L + G
Sbjct: 18 IEFSDVNFSYPKQTNHRTL-KSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-AEGD 75
Query: 502 IAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVE 553
I G + + I VPQ T++ ++Y +D+EV +
Sbjct: 76 IKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVI--------K 127
Query: 554 LLKNVDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 610
K+ L ++ P + + G+ +LS GE+QR+ +AR PK I DE TS++
Sbjct: 128 ATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLD 187
Query: 611 TDMEERFCAKVRAM--GTSCITISHR 634
+ E F V + + I I+HR
Sbjct: 188 SKTEYLFQKAVEDLRKNRTLIIIAHR 213
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 46/207 (22%), Positives = 77/207 (37%), Gaps = 62/207 (29%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS----------LTKPS--QHI 1164
+ + F I G + + G GSGKS++ ++L + G + S I
Sbjct: 37 KSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSII 95
Query: 1165 DEEAGSGCGIFYVPQRPYTCLGTLRDQIIY---PLSREEAE--LRALKLHGKGEKLVD-- 1217
GI VPQ T++ I+Y + EE ++ +L+ E L
Sbjct: 96 --------GI--VPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKW 145
Query: 1218 TTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFG 1277
T + + G++LS G GE+QR+ +AR PK
Sbjct: 146 DTIVGNK-------GMKLS--------G-------------GERQRIAIARCLLKDPKIV 177
Query: 1278 ILDECTNA----TSVDVEEQLYRLAKD 1300
I DE T++ T ++ + L K+
Sbjct: 178 IFDEATSSLDSKTEYLFQKAVEDLRKN 204
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 3e-11
Identities = 37/161 (22%), Positives = 65/161 (40%), Gaps = 30/161 (18%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKE------ 514
++ ++ ++E G + GPNG+GK++ R++ L SG + G ++ +E
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGK--NVVEEPHEVRK 88
Query: 515 -IFYVPQRP--YTAVGTLRDQL-----IYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 566
I Y+P+ Y + + L Y S E+E + + L +
Sbjct: 89 LISYLPEEAGAYRNM-QGIEYLRFVAGFYAS-SSSEIEEMVE----RATEIAGLGEKIKD 142
Query: 567 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
S G ++L +AR P+ AILDE TS
Sbjct: 143 RV--------STYSKGMVRKLLIARALMVNPRLAILDEPTS 175
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 8e-08
Identities = 39/209 (18%), Positives = 75/209 (35%), Gaps = 58/209 (27%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS-------LTKPSQHIDEEAGSG 1171
++FEI G+ + GPNG+GK++ R++ L SG + + + +
Sbjct: 34 ISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLIS-- 91
Query: 1172 CGIFYVPQRP--YTCLGTLRDQI-----IYPLSREEAELRALKLHGKGEKLVDTTNILDS 1224
Y+P+ Y + + + Y S E E + ++ +
Sbjct: 92 ----YLPEEAGAYRNM-QGIEYLRFVAGFYASSSSEIEEMVERA----TEIAGLGEKIKD 142
Query: 1225 YLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTN 1284
+ T S G ++L +AR P+ ILDE T+
Sbjct: 143 RVST---------------------------YSKGMVRKLLIARALMVNPRLAILDEPTS 175
Query: 1285 ----ATSVDVEEQLYRLAKDMGIT-FVTS 1308
+ +V + L + ++ G+T V+S
Sbjct: 176 GLDVLNAREVRKILKQASQ-EGLTILVSS 203
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 4e-11
Identities = 41/203 (20%), Positives = 73/203 (35%), Gaps = 45/203 (22%)
Query: 422 ELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNG 481
+ +K+ Q N +R + + + FS + G +++++ K+E G L + G G
Sbjct: 18 FGELFEKAKQNNNNRKTSNGDDSLSFSNF---SLLGTPVLKDINFKIERGQLLAVAGSTG 74
Query: 482 SGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLI------- 534
+GK+SL ++ G G I G I + Q + GT+++ +I
Sbjct: 75 AGKTSLLMMIMGELEPSEGKIKHSG-------RISFCSQNSWIMPGTIKENIIGVSYDEY 127
Query: 535 -YP-------LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQR 586
Y L D + L E I LS G++ R
Sbjct: 128 RYRSVIKACQLEEDISK--FAEKDNIVL--------------GEGGIT----LSGGQRAR 167
Query: 587 LGMARLFYHKPKFAILDECTSAV 609
+ +AR Y +LD +
Sbjct: 168 ISLARAVYKDADLYLLDSPFGYL 190
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 8e-06
Identities = 26/131 (19%), Positives = 52/131 (39%), Gaps = 17/131 (12%)
Query: 1063 INRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFE 1122
+ + E + + +++ N DS+SFS + + + + F+
Sbjct: 7 MENVTAFWEEGFGELFEKAKQNNNNRKTSNG---DDSLSFSNF---SLLGTPVLKDINFK 60
Query: 1123 IVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPY 1182
I G+ L V G G+GK+S+ ++ G G + +G I + Q +
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK--------HSGR---ISFCSQNSW 109
Query: 1183 TCLGTLRDQII 1193
GT+++ II
Sbjct: 110 IMPGTIKENII 120
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 8e-11
Identities = 44/218 (20%), Positives = 79/218 (36%), Gaps = 44/218 (20%)
Query: 441 EANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG 500
E ++ + G ++ + + ++ G I G NG GKS+LF+ G+ SG
Sbjct: 4 EDYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSG 63
Query: 501 HIAKPGVG--------SDLNKEIFYVPQRPYTAVGTLRDQLIYPL-------------TS 539
I L + I V Q P +QL
Sbjct: 64 RILFDNKPIDYSRKGIMKLRESIGIVFQDP-------DNQLFSASVYQDVSFGAVNMKLP 116
Query: 540 DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599
+ E+ LK +E+L D+ LS G+++R+ +A + +PK
Sbjct: 117 EDEIRKRVD----NALKRTGIEHLKDKPT--------HCLSFGQKKRVAIAGVLVMEPKV 164
Query: 600 AILDECTS----AVTTDMEERFCAKVRAMGTSCITISH 633
ILDE T+ +++ + + +G + I +H
Sbjct: 165 LILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATH 202
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 4e-06
Identities = 42/233 (18%), Positives = 80/233 (34%), Gaps = 78/233 (33%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRG-LWP-----VVSGSLTKPSQHIDEEAGS 1170
+ + I G+ + G NG GKS++F+ G L P + S+ +
Sbjct: 25 KGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84
Query: 1171 GCGIFYVPQRPYTCLGTLRDQIIYP--------------LSREEAELRALKLHGKGEKLV 1216
GI V Q P +Q+ L +E R
Sbjct: 85 SIGI--VFQDP-------DNQLFSASVYQDVSFGAVNMKLPEDEIRKRV----------- 124
Query: 1217 DTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKF 1276
L+ + +L ++ LS G+++R+ +A + +PK
Sbjct: 125 ----------DNALKRTGIEHLKDKP----------THCLSFGQKKRVAIAGVLVMEPKV 164
Query: 1277 GILDECTNATS-------VDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLEL 1322
ILDE T+ ++ + L + K++GIT + ++ H +++
Sbjct: 165 LILDE---PTAGLDPMGVSEIMKLLVEMQKELGITIIIAT--------HDIDI 206
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 1e-10
Identities = 32/162 (19%), Positives = 59/162 (36%), Gaps = 39/162 (24%)
Query: 462 ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521
+++ K+E G L + G G+GK+SL ++ G G I G I + Q
Sbjct: 25 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------RISFCSQF 77
Query: 522 PYTAVGTLRDQLIYPLTSDQE--------------VEPLTHGGMVELLKNVDLEYLLDRY 567
+ GT+++ +I+ ++ D+ + + L
Sbjct: 78 SWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVL------------- 124
Query: 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
E I LS G++ R+ +AR Y +LD +
Sbjct: 125 -GEGGIT----LSGGQRARISLARAVYKDADLYLLDSPFGYL 161
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 4e-05
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176
+ + F+I G+ L V G G+GK+S+ ++ G G + +G I +
Sbjct: 25 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH--------SGR---ISF 73
Query: 1177 VPQRPYTCLGTLRDQIIY 1194
Q + GT+++ II+
Sbjct: 74 CSQFSWIMPGTIKENIIF 91
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 62.1 bits (152), Expect = 2e-10
Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 38/212 (17%)
Query: 445 IEFSGVKVV-TPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
I F ++ P V+++N+ L ++ G + I G +GSGKS+L +++ + +G +
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 504 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLT-----HGG 550
G + L +++ V Q ++ D + P S ++V H
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 551 MVELLKNVDLEYLLDRYPPEK------EINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
+ EL E E G LS G++QR+ +AR + PK I DE
Sbjct: 128 ISEL--------------REGYNTIVGE--QGAGLSGGQRQRIAIARALVNNPKILIFDE 171
Query: 605 CTSAVTTDMEERFC-AKVRAM-GTSCITISHR 634
TSA+ + E + G + I I+HR
Sbjct: 172 ATSALDYESEHVIMRNMHKICKGRTVIIIAHR 203
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 6e-05
Identities = 44/217 (20%), Positives = 79/217 (36%), Gaps = 67/217 (30%)
Query: 1110 PSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS----------LTK 1159
P ++ + I G+ + + G +GSGKS++ ++++ + +G
Sbjct: 19 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADP 78
Query: 1160 PS--QHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIY---PLSREEAELRALKL---HGK 1211
+ + G+ V Q ++ D I +S E+ A KL H
Sbjct: 79 NWLRRQV--------GV--VLQDNVLLNRSIIDNISLANPGMSVEKVI-YAAKLAGAHDF 127
Query: 1212 GEKLVDTTNILDSYLKTILE-GVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLF 1270
+L + Y + E G LS G G++QR+ +AR
Sbjct: 128 ISELR------EGYNTIVGEQGAGLS--------G-------------GQRQRIAIARAL 160
Query: 1271 FHKPKFGILDECTNATS-VDVE------EQLYRLAKD 1300
+ PK I DE ATS +D E ++++ K
Sbjct: 161 VNNPKILIFDE---ATSALDYESEHVIMRNMHKICKG 194
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 4e-10
Identities = 40/162 (24%), Positives = 65/162 (40%), Gaps = 39/162 (24%)
Query: 462 ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521
+T + G+ + + G G GKSSL L V GH+A G + YVPQ+
Sbjct: 22 NGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------SVAYVPQQ 74
Query: 522 PYTAVGTLRDQLIYPLTSDQE--------------VEPLTHGGMVELLKNVDLEYLLDRY 567
+ +LR+ +++ ++ +E L G E+
Sbjct: 75 AWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEI------------- 121
Query: 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
EK +N LS G++QR+ +AR Y + D+ SAV
Sbjct: 122 -GEKGVN----LSGGQKQRVSLARAVYSNADIYLFDDPLSAV 158
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 12/98 (12%)
Query: 1098 DSISFSKLDII-TPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS 1156
+SI+ S +TF I G + V G G GKSS+ L V G
Sbjct: 2 NSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 1157 LTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIY 1194
+ GS + YVPQ+ + +LR+ I++
Sbjct: 62 VAI--------KGS---VAYVPQQAWIQNDSLRENILF 88
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 6e-10
Identities = 53/208 (25%), Positives = 80/208 (38%), Gaps = 44/208 (21%)
Query: 431 QRNGSRNYFSEANYIEFSGVKVVTPTGNVLVE---NLTLKVEPGSNLLITGPNGSGKSSL 487
+ + + I+ S + V G ++ N++L V G + G +G+GKS+L
Sbjct: 11 HHSSGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTL 70
Query: 488 FRVLGGLWPLVSGHIAKPGV------GSDLNKE------IF----YVPQRPYTAVGTLRD 531
R + L G + G S+L K IF + R T+
Sbjct: 71 IRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSR------TVFG 124
Query: 532 QLIYPL----TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRL 587
+ PL T EV+ ELL V L D YP LS G++QR+
Sbjct: 125 NVALPLELDNTPKDEVKRRVT----ELLSLVGLGDKHDSYP--------SNLSGGQKQRV 172
Query: 588 GMARLFYHKPKFAILDECTSAV---TTD 612
+AR PK + D+ TSA+ TT
Sbjct: 173 AIARALASNPKVLLCDQATSALDPATTR 200
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 8e-10
Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 39/183 (21%)
Query: 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
IEF GV+ + P G V ++ ++ G + + GP+GSGK+++ R++ GL G +
Sbjct: 14 TIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW 73
Query: 504 KPGVGSDLNKEIFYVP--QRPYTAVG------------TLRDQLIYPL----TSDQEVEP 545
G K + +P +R VG T+ D + + L E++
Sbjct: 74 IGG------KRVTDLPPQKRN---VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDA 124
Query: 546 LTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDEC 605
ELL+ + LE +R+P ELS G+QQR+ +AR +P+ + DE
Sbjct: 125 RVR----ELLRFMRLESYANRFP--------HELSGGQQQRVALARALAPRPQVLLFDEP 172
Query: 606 TSA 608
+A
Sbjct: 173 FAA 175
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 1e-09
Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 44/167 (26%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
N ++NL+LKVE G +I GP G+GK+ ++ G SG I G K++
Sbjct: 12 KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDG------KDVT 65
Query: 517 YVP--QRPYTAVG------------TLRDQLIYPLT-----SDQEVEPLTHGGMVELLKN 557
+ + + ++ L + + + V + ++
Sbjct: 66 DLSPEKHD---IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVL--------DTARD 114
Query: 558 VDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
+ +E+LLDR P LS GEQQR+ +AR PK +LDE
Sbjct: 115 LKIEHLLDRNP--------LTLSGGEQQRVALARALVTNPKILLLDE 153
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 4e-09
Identities = 43/170 (25%), Positives = 69/170 (40%), Gaps = 35/170 (20%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
++ +++L ++PG L I G +G GK++L R L G SG I+ G + +
Sbjct: 16 NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGK--TIFSKNT 73
Query: 517 YVP--QRPYTAVG------------TLRDQLIYPL----TSDQEVEPLTHGGMVELLKNV 558
+P +R +G T+ + Y L + +L+
Sbjct: 74 NLPVRERR---LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIE----AMLELT 126
Query: 559 DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
+ L RYP ELS G+QQR +AR P+ +LDE SA
Sbjct: 127 GISELAGRYP--------HELSGGQQQRAALARALAPDPELILLDEPFSA 168
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 5e-09
Identities = 55/212 (25%), Positives = 81/212 (38%), Gaps = 41/212 (19%)
Query: 445 IEFSGVKVV----TPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG 500
IE V + TP +EN++L + G LL+ G GSGKS+L +++ GL SG
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 501 HIAKPGVGSDLN---KEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE--PLTHGGMVELL 555
+ G + I Q P DQ EV + +
Sbjct: 63 DVLYDGERKKGYEIRRNIGIAFQYP-------EDQFFAE-RVFDEVAFAVKNFYPDRDPV 114
Query: 556 KNV---------DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606
V D + DR P LS GE++R+ +A + H+P ILDE
Sbjct: 115 PLVKKAMEFVGLDFDSFKDRVP--------FFLSGGEKRRVAIASVIVHEPDILILDEPL 166
Query: 607 SAVTTDMEER-----FCAKVRAMGTSCITISH 633
+ D E + K + +G + I ISH
Sbjct: 167 VGL--DREGKTDLLRIVEKWKTLGKTVILISH 196
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 56.7 bits (138), Expect = 6e-09
Identities = 62/231 (26%), Positives = 95/231 (41%), Gaps = 44/231 (19%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
+ +K V +L + ++L V+ G + I G +GSGKS+L +LG L G +
Sbjct: 5 LRAENIKKVIRGYEIL-KGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFL 63
Query: 505 PGVG-SDL---------NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGM-- 551
G N+++ +V Q + LI LT+ + V P+ G
Sbjct: 64 EGKEVDYTNEKELSLLRNRKLGFVFQF-H--------YLIPELTALENVIVPMLKMGKPK 114
Query: 552 -------VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
LL + L L R P ELS GEQQR+ +AR ++P DE
Sbjct: 115 KEAKERGEYLLSELGLGDKLSRKP--------YELSGGEQQRVAIARALANEPILLFADE 166
Query: 605 CT----SAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSL-DGE 650
T SA T + + F K+ GTS + ++H L L + DG+
Sbjct: 167 PTGNLDSANTKRVMDIF-LKINEGGTSIVMVTHERELAELTHRTLEMKDGK 216
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 3e-08
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 33/178 (18%)
Query: 445 IEFSGVKVVTPTGNVL-VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
I V V G V+ ++N+ + +E G I GP+G+GK++ R++ GL +G +
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 504 KPGVGSDL--NKEIFYVP--QRPYTAV---------GTLRDQLIYPL----TSDQEVEPL 546
L + VP R V T + + +PL S +E+
Sbjct: 64 ---FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR 120
Query: 547 THGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
E+ K +D+ ++L+ +P ELS +QQR+ +AR P +LDE
Sbjct: 121 VE----EVAKILDIHHVLNHFP--------RELSGAQQQRVALARALVKDPSLLLLDE 166
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 3e-08
Identities = 49/162 (30%), Positives = 73/162 (45%), Gaps = 30/162 (18%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV-----GSDLNK---E 514
+ + + G +++ GP+GSGKS+ R L L G I G+ ++LNK E
Sbjct: 42 GINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101
Query: 515 IFYVPQR----PYTAVGTLRDQLIYPL----TSDQEVEPLTHGGMVELLKNVDLEYLLDR 566
+ V QR P+ V L + + P+ ++ E M ELL V L+
Sbjct: 102 VGMVFQRFNLFPHMTV--LNNITLAPMKVRKWPREKAEAK---AM-ELLDKVGLKDKAHA 155
Query: 567 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
YP D LS G+ QR+ +AR +PK + DE TSA
Sbjct: 156 YP--------DSLSGGQAQRVAIARALAMEPKIMLFDEPTSA 189
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 4e-08
Identities = 73/346 (21%), Positives = 130/346 (37%), Gaps = 50/346 (14%)
Query: 310 ESHIQQKFKAL-TRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDT 367
E + + F T + L W F + I++I L +
Sbjct: 219 EDNEAKNFDKKNTNFLTRALKHTRWNAYS--FAAINTVTDIGPIIVI--GVGAYLAISGS 274
Query: 368 STLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIED 427
T+G + + + Y + LF L L S L + DR+ +L+ + I++
Sbjct: 275 ITVG--TLAAFVGY----LELLFGPLRRLVASFTTLTQSFASMDRVFQLI--DEDYDIKN 326
Query: 428 KS-----PQRNGSRNYFSEANYIEFSGVKVVTPTGNVLV-ENLTLKVEPGSNLLITGPNG 481
+ G I+ V + +++ L +E G + G +G
Sbjct: 327 GVGAQPIEIKQGR---------IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSG 377
Query: 482 SGKSSLFRVLGGLWPLVSGHIAKPGV------GSDLNKEIFYVPQRPYTAVGTLRDQLIY 535
GKS+L ++ + + SG I G L +I V Q T+++ ++
Sbjct: 378 GGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILL 437
Query: 536 --PLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPP--EKEIN-WGDELSLGEQQRLGMA 590
P +D+EV E K + + P + E+ G +LS G++QRL +A
Sbjct: 438 GRPTATDEEVV--------EAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIA 489
Query: 591 RLFYHKPKFAILDECTSAVTTDMEER-FCAKVRAM-GTSCITISHR 634
R+F + P ILDE TSA+ + E A + + ++HR
Sbjct: 490 RIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHR 535
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 6e-04
Identities = 100/594 (16%), Positives = 195/594 (32%), Gaps = 135/594 (22%)
Query: 760 QLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIR 819
++ A + + + I I L + V+ + + + + FI +R
Sbjct: 15 RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVR 74
Query: 820 HLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQ------RITHDLEKLTT 873
+ + +L +RK + + +S++ +Q R+ +D+E+
Sbjct: 75 PPIEFIRQYLAQWTSNKILYD-IRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKD 133
Query: 874 DLSGLVTGMVKPSVDI-------LWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEF 926
+ + + + I + ++ + I Y+L F +
Sbjct: 134 FILTGLMNIWLDCITIIIALSIMFFLDVKLTLAA----LFIFPFYILTVYVFFGRLRKLT 189
Query: 927 -------GDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFREL-LEHS 978
++ F+HER++ + +F A E + F +
Sbjct: 190 RERSQALAEVQG----------FLHERVQGISVVKSF----AIEDNEAK-NFDKKNTNFL 234
Query: 979 LLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASV 1038
LK F ++ + + A ++ G + LA+
Sbjct: 235 TRALKHTRWNAYS--FAAINTVTDIGPIIVIGVG-------AYLAISGSITVGT--LAAF 283
Query: 1039 VSQSFLAFGDILELHRKFVELSGGI---NRIFEL----EELLDAAQPGD-DEISGSSQHK 1090
V L FG + L F L+ +R+F+L ++ + + G
Sbjct: 284 VGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGR---- 339
Query: 1091 WNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLW 1150
D +SF ++ + + + I G+++ G +G GKS++ ++ +
Sbjct: 340 ---IDIDH-VSFQ----YNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 391
Query: 1151 PVVSGS----------LTKPS--QHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIY---P 1195
V SG S I G+ V Q T+++ I+
Sbjct: 392 DVTSGQILIDGHNIKDFLTGSLRNQI--------GL--VQQDNILFSDTVKENILLGRPT 441
Query: 1196 LSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWED- 1254
+ EE A K+ N D + G+D + E
Sbjct: 442 ATDEEVV-EAAKM----------ANAHD--------------FIMNLPQGYDTEVG-ERG 475
Query: 1255 -ILSLGEQQRLGMARLFFHKPKFGILDECTNATS-VDVE------EQLYRLAKD 1300
LS G++QRL +AR+F + P ILDE ATS +D+E E L L+KD
Sbjct: 476 VKLSGGQKQRLSIARIFLNNPPILILDE---ATSALDLESESIIQEALDVLSKD 526
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 4e-08
Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 32/160 (20%)
Query: 463 NLTLKVEPGSNLL-ITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVP-- 519
L + E G + + GP G+GKS ++ G+ G + G +I +P
Sbjct: 15 RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNG------ADITPLPPE 68
Query: 520 QRPYTAV---------GTLRDQLIYPL--TSDQEVEPLTHGGMVELLKNVDLEYLLDRYP 568
+R V ++ + Y L E + E+ + + + +LLDR P
Sbjct: 69 RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVR----EMAEKLGIAHLLDRKP 124
Query: 569 PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
LS GE+QR+ +AR +P+ +LDE SA
Sbjct: 125 --------ARLSGGERQRVALARALVIQPRLLLLDEPLSA 156
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 6e-04
Identities = 44/210 (20%), Positives = 78/210 (37%), Gaps = 69/210 (32%)
Query: 1128 SLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP--QRPYTCL 1185
LL GP G+GKS ++ G+ G + ++ G I +P +R +
Sbjct: 28 VLL--GPTGAGKSVFLELIAGIVKPDRGEV-----RLN-----GADITPLPPERRG---I 72
Query: 1186 G------------TLRDQIIYPL---SREEAELRALKLHGKGEKLVDTTNILDSYLKTIL 1230
G ++ I Y L R E + R + +
Sbjct: 73 GFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRV---------------------REMA 111
Query: 1231 EGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNA----T 1286
E + +++LL+R+ LS GE+QR+ +AR +P+ +LDE +A T
Sbjct: 112 EKLGIAHLLDRKP----------ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKT 161
Query: 1287 SVDVEEQLYRLAKDMGITF--VTSSQRPAL 1314
+ E+L + ++ + VT A
Sbjct: 162 KGVLMEELRFVQREFDVPILHVTHDLIEAA 191
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 7e-08
Identities = 50/222 (22%), Positives = 84/222 (37%), Gaps = 54/222 (24%)
Query: 445 IEFSGVKVVTPT-GNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502
++F V P NV V + LT + PG + GPNGSGKS++ +L L+ G +
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 503 AKPGVG-SDLN-----KEIFYVPQRPYTAVGTLRDQLIYPLT---SDQEVE--------- 544
G + ++ V Q P + R+ + Y LT + +E+
Sbjct: 77 LLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAH 136
Query: 545 ----PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 600
G D E G++LS G++Q + +AR KP+
Sbjct: 137 DFISGFPQG--------------YDTEVGET----GNQLSGGQRQAVALARALIRKPRLL 178
Query: 601 ILDECTSAVTTDMEERFCAKV-----RAM---GTSCITISHR 634
ILD TSA+ + +V + + + I+ +
Sbjct: 179 ILDNATSALDAGNQ----LRVQRLLYESPEWASRTVLLITQQ 216
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 8e-08
Identities = 57/198 (28%), Positives = 92/198 (46%), Gaps = 35/198 (17%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SD 510
+++++T ++PG + + GP GSGK+++ +L + + G I G+ S
Sbjct: 367 KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSS 426
Query: 511 LNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELLK--NVD--LEYLL 564
L I V Q T+++ L Y P +D+E+ E K + D +++L
Sbjct: 427 LRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEI--------KEAAKLTHSDHFIKHLP 478
Query: 565 DRYPPEKEIN-WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV-R 622
+ Y E + G++LS G++Q L + R F PK ILDE TS V T E +
Sbjct: 479 EGY--ETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTE----KSIQA 532
Query: 623 AMG------TSCITISHR 634
AM TS I I+HR
Sbjct: 533 AMWKLMEGKTSII-IAHR 549
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 1e-07
Identities = 44/208 (21%), Positives = 76/208 (36%), Gaps = 54/208 (25%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520
++ +++ V G LI GPNGSGKS+L V+ G G + K+I +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFEN------KDI--TNK 74
Query: 521 RPY--TAVGTLR-----------------------------DQLIYPLTSDQEVEPLTHG 549
P G +R + L Y +E E +
Sbjct: 75 EPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKA 134
Query: 550 GMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE----C 605
++L+ + L +L DR ELS G+ + + + R PK ++DE
Sbjct: 135 --FKILEFLKLSHLYDRK--------AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
Query: 606 TSAVTTDMEERFCAKVRAMGTSCITISH 633
+ D+ +++A G + + I H
Sbjct: 185 APGLAHDIFN-HVLELKAKGITFLIIEH 211
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 3e-04
Identities = 41/202 (20%), Positives = 77/202 (38%), Gaps = 34/202 (16%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 1178
++ + G L+ GPNGSGKS++ V+ G G + ++ I
Sbjct: 26 VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDIT------------N 73
Query: 1179 QRPY--TCLGTLRD-QIIYPLSREEAELRALK-----LHGKGEKLVDTTNILDSYLKTIL 1230
+ P G +R Q + E+ L+ GE +++ ++
Sbjct: 74 KEPAELYHYGIVRTFQTP----QPLKEMTVLENLLIGEICPGESPLNSL-FYKKWIPKEE 128
Query: 1231 EGVRLSY-LLEREEVGWDANLNWE-DILSLGEQQRLGMARLFFHKPKFGILDECT---NA 1285
E V ++ +LE + + + LS G+ + + + R PK ++DE
Sbjct: 129 EMVEKAFKILEF--LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAP 186
Query: 1286 T-SVDVEEQLYRLAKDMGITFV 1306
+ D+ + L K GITF+
Sbjct: 187 GLAHDIFNHVLEL-KAKGITFL 207
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 7e-07
Identities = 55/237 (23%), Positives = 98/237 (41%), Gaps = 47/237 (19%)
Query: 445 IEFSGVKVVTPTGNVLVE---NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
++ V G ++ N+ L ++ G + I GP+GSGKS++ ++G L G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 502 IAKPGVG-SDL---------NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PL---T 547
+ + +DL +I +V Q+ + LI LT+ + VE PL
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQ-F--------NLIPLLTALENVELPLIFKY 112
Query: 548 HGGM---------VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598
G M +E LK +LE + P ++LS G+QQR+ +AR + P
Sbjct: 113 RGAMSGEERRKRALECLKMAELEERFANHKP-------NQLSGGQQQRVAIARALANNPP 165
Query: 599 FAILDECT----SAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHD-VVLSLDGE 650
+ D+ T S + + G + + ++H + F + ++ DGE
Sbjct: 166 IILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGE 222
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 3e-06
Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 33/165 (20%)
Query: 457 GNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKE- 514
G + + + LKV G + + G NG+GK++ + GL G I G D+ +
Sbjct: 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF--NGQDITNKP 74
Query: 515 --------IFYVPQ--RPYTAVGTLRDQLI---YPLTSDQEVEPLTHGGMVELLKNVDLE 561
I VP+ R + + T+ + L+ Y + ++ DLE
Sbjct: 75 AHVINRMGIALVPEGRRIFPEL-TVYENLMMGAYNRKDKEGIKR-------------DLE 120
Query: 562 YLLDRYP--PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
++ +P E+ G LS GEQQ L + R +PK ++DE
Sbjct: 121 WIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDE 165
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 2e-05
Identities = 46/234 (19%), Positives = 73/234 (31%), Gaps = 24/234 (10%)
Query: 404 NRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT----GNV 459
++ Y L K N + E + + +
Sbjct: 390 THITPYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKI 449
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVP 519
L+ L+++ I GPNG GKS+L R + V G + YV
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANG--QVDGFPTQEEC------RTVYVE 501
Query: 520 QRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDEL 579
GT D + + V E +K+ +E+ I L
Sbjct: 502 HDI---DGTHSDTSVLDFVFESGVGTK------EAIKDKLIEFGFTDEMIAMPI---SAL 549
Query: 580 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISH 633
S G + +L +AR +LDE T+ + T + G + ITISH
Sbjct: 550 SGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISH 603
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 3e-04
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYV 518
+ ++ + S + + GPNG+GKS+L VL G SG + + I Y+
Sbjct: 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYT---HENC--RIAYI 741
Query: 519 PQ 520
Q
Sbjct: 742 KQ 743
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 4e-04
Identities = 28/172 (16%), Positives = 50/172 (29%), Gaps = 42/172 (24%)
Query: 1113 KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGC 1172
K+L + + + + GPNG GKS++ R + Q C
Sbjct: 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------------GQVDGFPTQEEC 495
Query: 1173 GIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEG 1232
YV ++ L + + ++ +K L
Sbjct: 496 RTVYVEHDI---------------DGTHSDTSVL------DFVFESGVGTKEAIKDKLIE 534
Query: 1233 VRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTN 1284
+ + + LS G + +L +AR +LDE TN
Sbjct: 535 FGFTDEMIAMPIS---------ALSGGWKMKLALARAVLRNADILLLDEPTN 577
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 9e-05
Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 33/173 (19%)
Query: 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG--VGSDLNKEIF 516
VL + ++L+ G + I G +GSGKS+ R + L G I G + +K+
Sbjct: 21 VL-KGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQ 79
Query: 517 YVPQRPYTAVGTLRDQL--------IYP-LTSDQEV--EPLTHGGM---------VELLK 556
+ LR +L ++ +T + V P+ G+ ++ L
Sbjct: 80 LKVADK-NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLA 138
Query: 557 NVDL-EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
V + E +YP LS G+QQR+ +AR +P + DE TSA
Sbjct: 139 KVGIDERAQGKYP--------VHLSGGQQQRVSIARALAMEPDVLLFDEPTSA 183
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 4e-04
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 28/161 (17%)
Query: 457 GNVL-VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG-VGSDL--- 511
GN + N+ LK++ G + + GP+GSGKS+L + G++ SG I ++L
Sbjct: 14 GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK 73
Query: 512 NKEIFYVPQR----PYTAVGTLRDQLIYPL----TSDQEVEPLTHGGMVELLKNVDLEYL 563
++ + V Q P+ V + +PL +E++ E+ K + ++ L
Sbjct: 74 DRNVGLVFQNWALYPHMTV---YKNIAFPLELRKAPREEIDKKVR----EVAKMLHIDKL 126
Query: 564 LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
L+RYP +LS G+QQR+ +AR +P+ +LDE
Sbjct: 127 LNRYP--------WQLSGGQQQRVAIARALVKEPEVLLLDE 159
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1338 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 9e-31 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 4e-19 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 6e-30 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-18 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 7e-29 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 5e-19 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 7e-28 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-17 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-27 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 4e-15 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 9e-27 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 9e-19 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 8e-24 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 5e-18 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-23 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 8e-13 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-22 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-12 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 4e-21 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 6e-10 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 5e-21 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 9e-14 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 7e-20 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 1e-12 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-19 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-13 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-19 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-11 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 3e-19 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 7e-14 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 4e-19 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-09 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-18 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-11 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 6e-18 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-09 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 5e-17 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-08 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 7e-13 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 6e-09 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 1e-09 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-04 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.003 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 120 bits (302), Expect = 9e-31
Identities = 49/219 (22%), Positives = 94/219 (42%), Gaps = 22/219 (10%)
Query: 445 IEFSGVKVVTPTGNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
I+ V + +++ L +E G + G +G GKS+L ++ + + SG I
Sbjct: 17 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 76
Query: 504 KPGV------GSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT--SDQEVEPLTHGGMVELL 555
G L +I V Q T+++ ++ +D+EV E
Sbjct: 77 IDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVV--------EAA 128
Query: 556 KNVDLEYLLDRYPP--EKEIN-WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTD 612
K + + P + E+ G +LS G++QRL +AR+F + P ILDE TSA+ +
Sbjct: 129 KMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 188
Query: 613 MEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDG 649
E + + + + ++HR + + D ++ ++
Sbjct: 189 SESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIEN 227
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 86.4 bits (214), Expect = 4e-19
Identities = 45/221 (20%), Positives = 83/221 (37%), Gaps = 34/221 (15%)
Query: 1097 QDSISFSKLDIITPSQKLLA-RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSG 1155
Q I + + + + I G+++ G +G GKS++ ++ + V SG
Sbjct: 14 QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSG 73
Query: 1156 SLTKPSQHIDEEAGSGCG--IFYVPQRPYTCLGTLRDQIIY--PLSREEAELRALKLHGK 1211
+ +I + I V Q T+++ I+ P + +E + A K+
Sbjct: 74 QILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKM--- 130
Query: 1212 GEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI-LSLGEQQRLGMARLF 1270
+ G+D + + LS G++QRL +AR+F
Sbjct: 131 ---------------------ANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIF 169
Query: 1271 FHKPKFGILDECTN----ATSVDVEEQLYRLAKDMGITFVT 1307
+ P ILDE T+ + ++E L L+KD V
Sbjct: 170 LNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVA 210
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 118 bits (297), Expect = 6e-30
Identities = 50/227 (22%), Positives = 91/227 (40%), Gaps = 17/227 (7%)
Query: 425 IEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGK 484
+ +K Q NG R + S+ N + FS + GN +++N+ L +E G L ITG GSGK
Sbjct: 19 LLEKVQQSNGDRKHSSDENNVSFSHL---CLVGNPVLKNINLNIEKGEMLAITGSTGSGK 75
Query: 485 SSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE 544
+SL ++ G G I + + + Q + GT+++ +I+ ++ D+
Sbjct: 76 TSLLMLILGELEASEGIIK-------HSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRY 128
Query: 545 PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
+ E + LS G++ R+ +AR Y +LD
Sbjct: 129 KSVVKACQLQQDITKFAEQDNTVLGEGGVT----LSGGQRARISLARAVYKDADLYLLDS 184
Query: 605 CTSAVTTDMEERF---CAKVRAMGTSCITISHRPALVAFHDVVLSLD 648
+ EE+ C + I ++ + + D +L L
Sbjct: 185 PFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILH 231
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 84.6 bits (209), Expect = 2e-18
Identities = 44/252 (17%), Positives = 92/252 (36%), Gaps = 49/252 (19%)
Query: 1068 ELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGK 1127
ELL+ Q + + SS ++++SFS L + + + I G+
Sbjct: 15 GFGELLEKVQQSNGDRKHSSD--------ENNVSFSHL---CLVGNPVLKNINLNIEKGE 63
Query: 1128 SLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGT 1187
L +TG GSGK+S+ ++ G G + + + Q + GT
Sbjct: 64 MLAITGSTGSGKTSLLMLILGELEASEGIIK-----HSGR------VSFCSQFSWIMPGT 112
Query: 1188 LRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWD 1247
+++ II+ +S +E ++ +++ +L + + +
Sbjct: 113 IKENIIFGVSYDEYRYKS-----------------------VVKACQLQQDITKFAEQDN 149
Query: 1248 ANLNWEDI-LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDM---GI 1303
L + LS G++ R+ +AR + +LD V EEQ++
Sbjct: 150 TVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANK 209
Query: 1304 TFVTSSQRPALI 1315
T + + + +
Sbjct: 210 TRILVTSKMEHL 221
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 114 bits (288), Expect = 7e-29
Identities = 48/216 (22%), Positives = 92/216 (42%), Gaps = 17/216 (7%)
Query: 445 IEFSGVKVVTPTGNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP------L 497
+EF V P V N+ LK+ G + + G +GSGKS++ ++ + L
Sbjct: 14 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 73
Query: 498 VSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKN 557
+ GH + + L ++ V Q + T+ + + Y E + + E +
Sbjct: 74 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYA-----RTEEYSREQIEEAARM 128
Query: 558 VDLEYLLDRYP--PEKEIN-WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME 614
+++ + I G LS G++QR+ +AR ILDE TSA+ T+ E
Sbjct: 129 AYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE 188
Query: 615 ERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLD 648
A + + + + I+HR + + D ++ ++
Sbjct: 189 RAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVE 224
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 86.1 bits (213), Expect = 5e-19
Identities = 39/216 (18%), Positives = 82/216 (37%), Gaps = 29/216 (13%)
Query: 1100 ISFSKLDIITPSQKLLA-RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT 1158
+ F + P +++ A R + +I GK++ + G +GSGKS++ ++ + + G +
Sbjct: 14 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 73
Query: 1159 KPSQHIDEEAGSGCG--IFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLV 1216
+ E + + V Q + T+ + I Y + E + + +
Sbjct: 74 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEE--------- 124
Query: 1217 DTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI-LSLGEQQRLGMARLFFHKPK 1275
+ + + G D + + LS G++QR+ +AR
Sbjct: 125 ------------AARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSP 172
Query: 1276 FGILDECTNA----TSVDVEEQLYRLAKDMGITFVT 1307
ILDE T+A + ++ L L K+ +
Sbjct: 173 ILILDEATSALDTESERAIQAALDELQKNRTSLVIA 208
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 111 bits (279), Expect = 7e-28
Identities = 49/215 (22%), Positives = 96/215 (44%), Gaps = 16/215 (7%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
+ V ++ +++ + +P S + GP+G GKS++F +L + +G I
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61
Query: 505 PGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV 558
G + +I +V Q GT+R+ L Y L D E L +L
Sbjct: 62 DGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQ-----VLDLA 116
Query: 559 DLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 615
++ P + G+ ++S G++QRL +AR F PK +LDE T+++ ++ E
Sbjct: 117 FARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESES 176
Query: 616 RFCAKVRAM--GTSCITISHRPALVAFHDVVLSLD 648
+ ++ G + + I+HR + + D + ++
Sbjct: 177 MVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIE 211
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 81.5 bits (201), Expect = 2e-17
Identities = 51/234 (21%), Positives = 92/234 (39%), Gaps = 26/234 (11%)
Query: 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTK 1159
+S +D + + R ++FE P + GP+G GKS++F +L + +G +T
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61
Query: 1160 PSQHIDEEAGS--GCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVD 1217
Q ID + I +V Q GT+R+ + Y L +
Sbjct: 62 DGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYT---------------- 105
Query: 1218 TTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI-LSLGEQQRLGMARLFFHKPKF 1276
D L +L+ +E + + + +S G++QRL +AR F PK
Sbjct: 106 -----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160
Query: 1277 GILDECTNATSVDVEEQLYRLAKDM--GITFVTSSQRPALIPFHSLELRLIDGE 1328
+LDE T + + E + + + G T + + R + I + G+
Sbjct: 161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQ 214
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 110 bits (277), Expect = 1e-27
Identities = 44/214 (20%), Positives = 89/214 (41%), Gaps = 12/214 (5%)
Query: 445 IEFSGVKVVTPTGNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
I F ++ + ++ +N+ L ++ G + I G +GSGKS+L +++ + +G +
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 504 KPGV------GSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKN 557
G + L +++ V Q ++ D + + + +
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 558 VDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF 617
+ L G LS G++QR+ +AR + PK I DE TSA+ + E
Sbjct: 122 IS---ELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 618 CAKVRAM--GTSCITISHRPALVAFHDVVLSLDG 649
+ + G + I I+HR + V D ++ ++
Sbjct: 179 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEK 212
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 74.2 bits (182), Expect = 4e-15
Identities = 37/212 (17%), Positives = 76/212 (35%), Gaps = 29/212 (13%)
Query: 1110 PSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDE 1166
P ++ + I G+ + + G +GSGKS++ ++++ + +G + D
Sbjct: 13 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADP 72
Query: 1167 EAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYL 1226
+ V Q ++ D I + + K D
Sbjct: 73 NWLRRQ-VGVVLQDNVLLNRSIIDNISLAN--PGMSVEKVIYAAKLAGAHD--------- 120
Query: 1227 KTILEGVRLSYLLEREEVGWDANLNWEDI-LSLGEQQRLGMARLFFHKPKFGILDECTNA 1285
+ G++ + + LS G++QR+ +AR + PK I DE T+A
Sbjct: 121 -----------FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSA 169
Query: 1286 TSVDVEEQLYRLAKDM--GITFVTSSQRPALI 1315
+ E + R + G T + + R + +
Sbjct: 170 LDYESEHVIMRNMHKICKGRTVIIIAHRLSTV 201
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 108 bits (271), Expect = 9e-27
Identities = 52/220 (23%), Positives = 92/220 (41%), Gaps = 20/220 (9%)
Query: 445 IEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502
++F V P ++++ LT + PG + GPNGSGKS++ +L L+ G +
Sbjct: 12 VQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL 71
Query: 503 AKPGV------GSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLK 556
G L++++ V Q P +L++ + Y LT +E +
Sbjct: 72 LLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTME-----EITAAAV 126
Query: 557 NVDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAV---- 609
+ P + + +LS G++Q + +AR KP ILD+ TSA+
Sbjct: 127 KSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANS 186
Query: 610 TTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDG 649
+E+ S + I+ +LV D +L L+G
Sbjct: 187 QLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEG 226
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 85.3 bits (211), Expect = 9e-19
Identities = 51/229 (22%), Positives = 92/229 (40%), Gaps = 32/229 (13%)
Query: 1097 QDSISFSKLDIITPSQK--LLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVS 1154
+ + F + P++ L+ + LTF + PG+ + GPNGSGKS+V +L+ L+
Sbjct: 9 EGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTG 68
Query: 1155 GSLT---KPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGK 1211
G L KP + + V Q P +L++ I Y L+++
Sbjct: 69 GQLLLDGKPLPQYEHRYLHRQ-VAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITA---- 123
Query: 1212 GEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI-LSLGEQQRLGMARLF 1270
+ G+D ++ LS G++Q + +AR
Sbjct: 124 -----------------AAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL 166
Query: 1271 FHKPKFGILDECTNA----TSVDVEEQLYRLAKDMGITFVTSSQRPALI 1315
KP ILD+ T+A + + VE+ LY + + + +Q +L+
Sbjct: 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLV 215
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 99.5 bits (248), Expect = 8e-24
Identities = 41/213 (19%), Positives = 80/213 (37%), Gaps = 36/213 (16%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
++ + V L L ++ G L++ GP+G GK++ R++ GL G I
Sbjct: 7 VKLENLTKRFG-NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF 65
Query: 505 PGV----GSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGM-------- 551
++ I V Q + +T + + PL
Sbjct: 66 GDRDVTYLPPKDRNISMVFQSY---------AVWPHMTVYENIAFPLKIKKFPKDEIDKR 116
Query: 552 -VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 610
+ + +E LL+RYP +LS G++QR+ +AR +P ++DE S +
Sbjct: 117 VRWAAELLQIEELLNRYP--------AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 168
Query: 611 TDMEERFCAKVRAM----GTSCITISHRPALVA 639
+ A+++ + + I ++H
Sbjct: 169 AKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAM 201
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 82.5 bits (204), Expect = 5e-18
Identities = 42/210 (20%), Positives = 81/210 (38%), Gaps = 43/210 (20%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176
+L I G+ L++ GP+G GK++ R++ GL G + + + I
Sbjct: 23 NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM 82
Query: 1177 VPQRPYTCLG-TLRDQIIYPL-----SREEAELRALKLHGKGEKLVDTTNILDSYLKTIL 1230
V Q T+ + I +PL ++E + R +L+ +L+ Y
Sbjct: 83 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA----ELLQIEELLNRYPAQ-- 136
Query: 1231 EGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNA----T 1286
LS G++QR+ +AR +P ++DE +
Sbjct: 137 -------------------------LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKL 171
Query: 1287 SVDVEEQLYRLAKDMGIT--FVTSSQRPAL 1314
V + ++ +L + + +T +VT Q A+
Sbjct: 172 RVAMRAEIKKLQQKLKVTTIYVTHDQVEAM 201
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 98.8 bits (246), Expect = 2e-23
Identities = 57/229 (24%), Positives = 89/229 (38%), Gaps = 35/229 (15%)
Query: 445 IEFSGVKVVTPTGNVLVE---NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
I+ S + V G ++ N++L V G + G +G+GKS+L R + L G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 502 I---------AKPGVGSDLNKEIFYVPQRP-----YTAVGTLRDQLIYPLTSDQEVEPLT 547
+ + ++I + Q T G + L T EV+
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 548 HGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
ELL V L D YP LS G++QR+ +AR PK + DE TS
Sbjct: 122 T----ELLSLVGLGDKHDSYP--------SNLSGGQKQRVAIARALASNPKVLLCDEATS 169
Query: 608 AV----TTDMEERFCAKVRAMGTSCITISHRPALVAF--HDVVLSLDGE 650
A+ T + E R +G + + I+H +V V + +GE
Sbjct: 170 ALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGE 218
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 67.2 bits (164), Expect = 8e-13
Identities = 40/206 (19%), Positives = 74/206 (35%), Gaps = 48/206 (23%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS-------LTKPSQHIDEEAG 1169
++ + G+ V G +G+GKS++ R + L GS LT S+ +A
Sbjct: 22 NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81
Query: 1170 SGCGIFYVPQRPYTCLGTLRDQIIYPL-----SREEAELRALKLHGKGEKLVDTTNILDS 1224
G+ + + T+ + PL ++E + R +L
Sbjct: 82 RQIGMIFQHFNLLSS-RTVFGNVALPLELDNTPKDEVKRRVTEL---------------- 124
Query: 1225 YLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTN 1284
L V L + + LS G++QR+ +AR PK + DE T+
Sbjct: 125 -----LSLVGLGDKHDS----------YPSNLSGGQKQRVAIARALASNPKVLLCDEATS 169
Query: 1285 ATSVDVEEQL----YRLAKDMGITFV 1306
A + + + +G+T +
Sbjct: 170 ALDPATTRSILELLKDINRRLGLTIL 195
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 95.7 bits (238), Expect = 3e-22
Identities = 47/231 (20%), Positives = 80/231 (34%), Gaps = 52/231 (22%)
Query: 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502
N + + VL + ++L+ G + I G +GSGKS+ R + L G I
Sbjct: 1 NKLHVIDLHKRYGGHEVL-KGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 503 -------------------AKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV 543
A L + V Q L +T + V
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHF---------NLWSHMTVLENV 110
Query: 544 --EPLTHGGM---------VELLKNVDL-EYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591
P+ G+ ++ L V + E +YP LS G+QQR+ +AR
Sbjct: 111 MEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP--------VHLSGGQQQRVSIAR 162
Query: 592 LFYHKPKFAILDECTSAVTTDMEE---RFCAKVRAMGTSCITISHRPALVA 639
+P + DE TSA+ ++ R ++ G + + ++H
Sbjct: 163 ALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFAR 213
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 66.8 bits (163), Expect = 2e-12
Identities = 42/226 (18%), Positives = 80/226 (35%), Gaps = 59/226 (26%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGC---- 1172
+ ++ + G + + G +GSGKS+ R + L G++ Q+I+
Sbjct: 19 KGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78
Query: 1173 -----------GIFYVPQRP--YTCLGTLRDQIIYP------LSREEAELRALKLHGKGE 1213
+ V Q ++ + T+ + ++ LS+ +A RALK
Sbjct: 79 ADKNQLRLLRTRLTMVFQHFNLWSHM-TVLENVMEAPIQVLGLSKHDARERALKY----- 132
Query: 1214 KLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHK 1273
L V + + + LS G+QQR+ +AR +
Sbjct: 133 ----------------LAKVGIDERAQGKYPVH---------LSGGQQQRVSIARALAME 167
Query: 1274 PKFGILDECTNATSVDVEEQL---YRLAKDMGIT--FVTSSQRPAL 1314
P + DE T+A ++ ++ + + G T VT A
Sbjct: 168 PDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFAR 213
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 92.1 bits (228), Expect = 4e-21
Identities = 52/223 (23%), Positives = 93/223 (41%), Gaps = 25/223 (11%)
Query: 445 IEFSGVKVVTPTGNVL-VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
I V V G V+ ++N+ + +E G I GP+G+GK++ R++ GL +G +
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 504 KPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTS-DQEVEPLTHGGM---------VE 553
N ++ P+ + L LT+ + PLT+ M E
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEE 123
Query: 554 LLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV---- 609
+ K +D+ ++L+ +P ELS +QQR+ +AR P +LDE S +
Sbjct: 124 VAKILDIHHVLNHFP--------RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARM 175
Query: 610 TTDMEERFCAKVRAMGTSCITISHRPALVAF--HDVVLSLDGE 650
+G + + +SH PA + V + + G+
Sbjct: 176 RDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGK 218
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 58.9 bits (142), Expect = 6e-10
Identities = 37/227 (16%), Positives = 75/227 (33%), Gaps = 37/227 (16%)
Query: 1100 ISFSKLDIITPSQKLLA-RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT 1158
I + + K++A + I G+ + GP+G+GK++ R++ GL +G L
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 1159 KPSQHIDEEAGSGC-----GIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGE 1213
+ + I V Q L+ E L +
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALY---------PNLTAFENIAFPLTNMKMSK 114
Query: 1214 KLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHK 1273
+ + R+ + + ++ N ++ LS +QQR+ +AR
Sbjct: 115 EEIRK---------------RVEEVAKILDIHHVLN-HFPRELSGAQQQRVALARALVKD 158
Query: 1274 PKFGILDECTNATSVDVEEQL----YRLAKDMGIT--FVTSSQRPAL 1314
P +LDE + + + + +G+T V+
Sbjct: 159 PSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIF 205
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 91.1 bits (226), Expect = 5e-21
Identities = 47/231 (20%), Positives = 91/231 (39%), Gaps = 40/231 (17%)
Query: 445 IEFSGVKVVTPTGN---VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
I+ V G ++N+ L ++ G + I GP+GSGKS++ ++G L G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 502 IAKPGVG-SDLNKE---------IFYVPQRPY-TAVGTLRDQLIYPLT---------SDQ 541
+ + +DL+ + I +V Q+ + T + + PL ++
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 542 EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601
L M EL E + P ++LS G+QQR+ +AR + P +
Sbjct: 122 RKRALECLKMAEL-----EERFANHKP--------NQLSGGQQQRVAIARALANNPPIIL 168
Query: 602 LDECTSAV----TTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLD 648
D+ T A+ + + G + + ++H + F + ++ L
Sbjct: 169 ADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLK 219
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 69.9 bits (171), Expect = 9e-14
Identities = 45/209 (21%), Positives = 78/209 (37%), Gaps = 49/209 (23%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEA---GS 1170
+ + I G+ + + GP+GSGKS++ ++ L G + + +D++
Sbjct: 22 KNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81
Query: 1171 GCGIFYVPQRPY-TCLGTLRDQIIYPL--------SREEAELRALKLHGKGEKLVDTTNI 1221
I +V Q+ L T + + PL S EE RAL+ E
Sbjct: 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAE-------- 133
Query: 1222 LDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDE 1281
+ E + LS G+QQR+ +AR + P + D+
Sbjct: 134 -------LEERFANHKPNQ---------------LSGGQQQRVAIARALANNPPIILADQ 171
Query: 1282 CTNA----TSVDVEEQLYRLAKDMGITFV 1306
T A T + + L +L ++ G T V
Sbjct: 172 PTGALDSKTGEKIMQLLKKLNEEDGKTVV 200
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 88.1 bits (218), Expect = 7e-20
Identities = 38/185 (20%), Positives = 71/185 (38%), Gaps = 22/185 (11%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-----DL 511
+++ ++ ++E G + GPNG+GK++ R++ L SG + G ++
Sbjct: 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEV 73
Query: 512 NKEIFYVPQRP-----YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 566
K I Y+P+ + LR + +S E+E + + L +
Sbjct: 74 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVE----RATEIAGLGEKIKD 129
Query: 567 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGT 626
S G ++L +AR P+ AILDE TS + ++
Sbjct: 130 RV--------STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ 181
Query: 627 SCITI 631
+TI
Sbjct: 182 EGLTI 186
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 66.6 bits (162), Expect = 1e-12
Identities = 37/204 (18%), Positives = 74/204 (36%), Gaps = 31/204 (15%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT-KPSQHIDEEAGSGCGIF 1175
+ ++FEI G+ + GPNG+GK++ R++ L SG +T ++E I
Sbjct: 19 KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLIS 78
Query: 1176 YVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRL 1235
Y+P+ + E + ++ ++ E L
Sbjct: 79 YLPEEAGAYRN---------MQGIEYLRFVAGFYASSSS------EIEEMVERATEIAGL 123
Query: 1236 SYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSV----DVE 1291
++ S G ++L +AR P+ ILDE T+ V +V
Sbjct: 124 GEKIKD----------RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVR 173
Query: 1292 EQLYRLAKD-MGITFVTSSQRPAL 1314
+ L + +++ + I + +
Sbjct: 174 KILKQASQEGLTILVSSHNMLEVE 197
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 88.1 bits (218), Expect = 1e-19
Identities = 43/207 (20%), Positives = 74/207 (35%), Gaps = 32/207 (15%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSD------ 510
++ +++ V G LI GPNGSGKS+L V+ G G +
Sbjct: 16 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 75
Query: 511 -LNKEIFYVPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGG-------------MVELL 555
+ I Q P T+ + L+ E + ++L
Sbjct: 76 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKIL 135
Query: 556 KNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV---TTD 612
+ + L +L DR ELS G+ + + + R PK ++DE + V
Sbjct: 136 EFLKLSHLYDRKA--------GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAH 187
Query: 613 MEERFCAKVRAMGTSCITISHRPALVA 639
+++A G + + I HR +V
Sbjct: 188 DIFNHVLELKAKGITFLIIEHRLDIVL 214
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 70.0 bits (171), Expect = 1e-13
Identities = 36/208 (17%), Positives = 72/208 (34%), Gaps = 24/208 (11%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCG 1173
++ + G L+ GPNGSGKS++ V+ G G + K + + G
Sbjct: 21 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80
Query: 1174 IFYVPQRPYTCLG-TLRDQIIYP-LSREEAELRALKLHGKGEKLVDTTNILDSYLKTILE 1231
I Q P T+ + ++ + E+ L +L K +
Sbjct: 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE----------- 129
Query: 1232 GVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVE 1291
+ +LE ++ + + LS G+ + + + R PK ++DE + +
Sbjct: 130 --KAFKILEFLKLSHLYDRKAGE-LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLA 186
Query: 1292 EQLYRL-----AKDMGITFVTSSQRPAL 1314
++ AK + + L
Sbjct: 187 HDIFNHVLELKAKGITFLIIEHRLDIVL 214
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 87.3 bits (216), Expect = 2e-19
Identities = 45/207 (21%), Positives = 82/207 (39%), Gaps = 25/207 (12%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520
V ++L+V+ G +++ GP+G GK++ R++ GL G I ++ +VP
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 521 RPYTAVGTLRDQLIYP--LTSDQEVEPLTHGGM---------VELLKNVDLEYLLDRYPP 569
+ + +YP D PL + E+ + + L LL+R P
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP- 137
Query: 570 EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS----AVTTDMEERFCAKVRAMG 625
ELS G++QR+ + R KP+ ++DE S + M R +G
Sbjct: 138 -------RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG 190
Query: 626 TSCITISHRPALVAF--HDVVLSLDGE 650
+ I ++H + + G
Sbjct: 191 VTTIYVTHDQVEAMTMGDRIAVMNRGV 217
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 63.8 bits (155), Expect = 1e-11
Identities = 45/204 (22%), Positives = 90/204 (44%), Gaps = 25/204 (12%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176
R+++ E+ G+ +++ GP+G GK++ R++ GL G + + + A GIF
Sbjct: 20 REMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLV---ADPEKGIFV 76
Query: 1177 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS 1236
P+ + + ++ + LKL + + D ++ + E + L+
Sbjct: 77 PPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEI------DQRVREVAELLGLT 130
Query: 1237 YLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTN----ATSVDVEE 1292
LL R LS G++QR+ + R KP+ ++DE + V +
Sbjct: 131 ELLNR----------KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRA 180
Query: 1293 QLYRLAKDMGIT--FVTSSQRPAL 1314
+L +L + +G+T +VT Q A+
Sbjct: 181 ELKKLQRQLGVTTIYVTHDQVEAM 204
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 85.4 bits (211), Expect = 3e-19
Identities = 35/195 (17%), Positives = 79/195 (40%), Gaps = 19/195 (9%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
+E + V ++E +T+ +E G+ + GPNG GK++L + + + G I
Sbjct: 3 LEIRDLSVGY--DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIY 60
Query: 505 PGV-GSDLNKEIFYVPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY 562
GV + + +IF++P+ ++ D L + + +++ L++V++
Sbjct: 61 NGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYG--VKVNKNEIMDALESVEVLD 118
Query: 563 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV----TTDMEERFC 618
L + LS G +R+ +A + +LD+ A+ + +
Sbjct: 119 LKKKLGE---------LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSIL 169
Query: 619 AKVRAMGTSCITISH 633
++ G I+
Sbjct: 170 EILKEKGIVIISSRE 184
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 69.6 bits (170), Expect = 7e-14
Identities = 35/198 (17%), Positives = 68/198 (34%), Gaps = 35/198 (17%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176
++T I G + GPNG GK+++ + + + G + I + G IF+
Sbjct: 18 ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKG---KIFF 74
Query: 1177 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS 1236
+P+ +S E+ L+G + + L
Sbjct: 75 LPEEIIVP---------RKISVEDYLKAVASLYGVKVNKNEIMDAL-------------- 111
Query: 1237 YLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNA----TSVDVEE 1292
E V LS G +R+ +A + +LD+ A + V +
Sbjct: 112 -----ESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLK 166
Query: 1293 QLYRLAKDMGITFVTSSQ 1310
+ + K+ GI ++S +
Sbjct: 167 SILEILKEKGIVIISSRE 184
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 85.8 bits (212), Expect = 4e-19
Identities = 40/205 (19%), Positives = 75/205 (36%), Gaps = 28/205 (13%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGSDLNKEI 515
+ L+ +V G L + GPNG+GKS+L + G+ +G + + L
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHR 74
Query: 516 FYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINW 575
Y+ Q+ T + D+ L + ++ + L+ L R
Sbjct: 75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLN----DVAGALALDDKLGRST------- 123
Query: 576 GDELSLGEQQRLGMARLFYH-------KPKFAILDECTSAVTTDMEERFCAKVRAM---G 625
++LS GE QR+ +A + + +LDE +++ + + A+ G
Sbjct: 124 -NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQG 182
Query: 626 TSCITISHRPALVAFH-DVVLSLDG 649
+ + SH H L G
Sbjct: 183 LAIVMSSHDLNHTLRHAHRAWLLKG 207
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 57.3 bits (138), Expect = 2e-09
Identities = 41/207 (19%), Positives = 71/207 (34%), Gaps = 39/207 (18%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 1178
L+ E+ G+ L + GPNG+GKS++ + G+ GS+ Q ++ +
Sbjct: 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEA---------WSA 67
Query: 1179 QRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYL 1238
+ L Q P + L H K + + + L
Sbjct: 68 TKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELL---------NDVAGALALDDK 118
Query: 1239 LEREEVGWDANLNWEDILSLGEQQRLGMARLFFH-------KPKFGILDECTNATSVDVE 1291
L R + LS GE QR+ +A + + +LDE N+ V +
Sbjct: 119 LGRS----------TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQ 168
Query: 1292 EQLYRLAKDM---GITFVTSSQRPALI 1315
L ++ + G+ V SS
Sbjct: 169 SALDKILSALCQQGLAIVMSSHDLNHT 195
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 84.2 bits (208), Expect = 2e-18
Identities = 42/217 (19%), Positives = 87/217 (40%), Gaps = 20/217 (9%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
++ V V +++ L + G ++ GP+G GKS+L R++ GL + SG +
Sbjct: 1 VQLQNVTKAWGEVVVS-KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI 59
Query: 505 PGVG----SDLNKEIFYVPQRPY-TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVD 559
+ + V Q ++ + + + L + + + + ++ + +
Sbjct: 60 GEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQ 119
Query: 560 LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE----CTSAVTTDMEE 615
L +LLDR P LS G++QR+ + R +P +LDE +A+ M
Sbjct: 120 LAHLLDRKP--------KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRI 171
Query: 616 RFCAKVRAMGTSCITISHRPALVAF--HDVVLSLDGE 650
+ +G + I ++H +V+ G
Sbjct: 172 EISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGR 208
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 63.8 bits (155), Expect = 1e-11
Identities = 44/210 (20%), Positives = 87/210 (41%), Gaps = 43/210 (20%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176
+ + +I G+ ++ GP+G GKS++ R++ GL + SG L + +++ + G+
Sbjct: 17 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGM 76
Query: 1177 VPQRPYTCLG-TLRDQIIYPL-----SREEAELRALKLHGKGEKLVDTTNILDSYLKTIL 1230
V Q ++ + + + L +E R ++ +++ ++LD K
Sbjct: 77 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQV----AEVLQLAHLLDRKPKA-- 130
Query: 1231 EGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDE----CTNAT 1286
LS G++QR+ + R +P +LDE A
Sbjct: 131 -------------------------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 165
Query: 1287 SVDVEEQLYRLAKDMGIT--FVTSSQRPAL 1314
V + ++ RL K +G T +VT Q A+
Sbjct: 166 RVQMRIEISRLHKRLGRTMIYVTHDQVEAM 195
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 82.7 bits (204), Expect = 6e-18
Identities = 36/194 (18%), Positives = 65/194 (33%), Gaps = 19/194 (9%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI--------AKPGVG 508
++ + LKV G + + G NG+GK++ + GL G I KP
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHV 77
Query: 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYP 568
+ R T+ + L+ + ++ E + L+ L +
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLG 137
Query: 569 PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV---TTDMEERFCAKVRAMG 625
LS GEQQ L + R +PK ++DE + + K+ G
Sbjct: 138 --------GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEG 189
Query: 626 TSCITISHRPALVA 639
T+ + +
Sbjct: 190 TTILLVEQNALGAL 203
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 57.2 bits (138), Expect = 2e-09
Identities = 35/208 (16%), Positives = 70/208 (33%), Gaps = 37/208 (17%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT-----KPSQHIDEEAGSG 1171
+ + ++ G+ + + G NG+GK++ + GL G + ++ G
Sbjct: 23 KGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82
Query: 1172 CGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILE 1231
+ +R + L + ++ +R++ E L L T
Sbjct: 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGT--- 139
Query: 1232 GVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNA----TS 1287
LS GEQQ L + R +PK ++DE +
Sbjct: 140 ------------------------LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILV 175
Query: 1288 VDVEEQLYRLAKD-MGITFVTSSQRPAL 1314
+V E + ++ ++ I V + AL
Sbjct: 176 SEVFEVIQKINQEGTTILLVEQNALGAL 203
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 79.7 bits (196), Expect = 5e-17
Identities = 48/194 (24%), Positives = 77/194 (39%), Gaps = 24/194 (12%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
N ++NL+LKVE G +I GP G+GK+ ++ G SG I G
Sbjct: 12 KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDG-----KDVTD 66
Query: 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMV-------ELLKNVDLEYLLDRYPP 569
P++ A L + + +E + + +++ +E+LLDR P
Sbjct: 67 LSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPL 126
Query: 570 EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV----TTDMEERFCAKVRAMG 625
LS GEQQR+ +AR PK +LDE SA+ + E +
Sbjct: 127 --------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNK 178
Query: 626 TSCITISHRPALVA 639
+ + I+H
Sbjct: 179 LTVLHITHDQTEAR 192
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 55.1 bits (132), Expect = 1e-08
Identities = 36/203 (17%), Positives = 73/203 (35%), Gaps = 32/203 (15%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176
L+ ++ G+ ++ GP G+GK+ ++ G SG + + + + + I +
Sbjct: 17 DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAF 76
Query: 1177 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS 1236
V Q + ++ ++ +++ + R+
Sbjct: 77 VYQNY---------SLFPHMNVKKNLEFGMRMKKIKDP------------------KRVL 109
Query: 1237 YLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNA----TSVDVEE 1292
++ + N LS GEQQR+ +AR PK +LDE +A T + E
Sbjct: 110 DTARDLKIEHLLDRNPLT-LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENARE 168
Query: 1293 QLYRLAKDMGITFVTSSQRPALI 1315
L L K +T + +
Sbjct: 169 MLSVLHKKNKLTVLHITHDQTEA 191
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 67.7 bits (165), Expect = 7e-13
Identities = 44/199 (22%), Positives = 77/199 (38%), Gaps = 22/199 (11%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYV 518
N+ ++ ++ GP G+GKS ++ G+ G + G + I +V
Sbjct: 17 NVDFEM-GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75
Query: 519 PQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMV-ELLKNVDLEYLLDRYPPEKEINWGD 577
PQ A+ + VE + V E+ + + + +LLDR P
Sbjct: 76 PQ--DYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP--------A 125
Query: 578 ELSLGEQQRLGMARLFYHKPKFAILDECTS----AVTTDMEERFCAKVRAMGTSCITISH 633
LS GE+QR+ +AR +P+ +LDE S + E R + ++H
Sbjct: 126 RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTH 185
Query: 634 RPALVAF--HDVVLSLDGE 650
A +V + L+G
Sbjct: 186 DLIEAAMLADEVAVMLNGR 204
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 55.8 bits (134), Expect = 6e-09
Identities = 37/205 (18%), Positives = 72/205 (35%), Gaps = 40/205 (19%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 1178
+ FE + ++ GP G+GKS ++ G+ G + I GI +VP
Sbjct: 18 VDFE-MGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVP 76
Query: 1179 QR----PYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVR 1234
Q P+ + + + R E + R ++ + + ++LD
Sbjct: 77 QDYALFPHLSVYRNIAYGLRNVERVERDRRVREMA----EKLGIAHLLDRKPAR------ 126
Query: 1235 LSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDE----CTNATSVDV 1290
LS GE+QR+ +AR +P+ +LDE T +
Sbjct: 127 ---------------------LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVL 165
Query: 1291 EEQLYRLAKDMGITFVTSSQRPALI 1315
E+L + ++ + + +
Sbjct: 166 MEELRFVQREFDVPILHVTHDLIEA 190
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 56.9 bits (136), Expect = 1e-09
Identities = 18/178 (10%), Positives = 43/178 (24%), Gaps = 28/178 (15%)
Query: 474 LLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQL 533
++ITG G GK++L + + + V T +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVR----------------DPETKKRTG 46
Query: 534 IYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593
+T++ + + + ++ E
Sbjct: 47 FRIITTEGKKKIFSSKFFTSKKLVGSYG--VNVQYF--------EELAIPILERAYREAK 96
Query: 594 YHKPKFAILDECTSAVTTDMEERFCAK--VRAMGTSCITISHRPALVAFHDVVLSLDG 649
+ K I+DE + R + + + + + + L G
Sbjct: 97 KDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPG 154
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1338 | |||
| d2bhua3 | 420 | Glycosyltrehalose trehalohydrolase, central domain | 100.0 | |
| d1ejda_ | 419 | UDP-N-acetylglucosamine enolpyruvyl transferase (E | 100.0 | |
| d2df7a1 | 419 | Birnavirus VP2 {Infectious bursal disease virus [T | 100.0 | |
| d1om4a_ | 418 | Nitric oxide (NO) synthase oxygenase domain {Rat ( | 100.0 | |
| d2gp4a2 | 418 | 6-phosphogluconate dehydratase EDD {Shewanella one | 100.0 | |
| d1f61a_ | 418 | Isocitrate lyase {Mycobacterium tuberculosis [TaxI | 100.0 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 100.0 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1w6ga1 | 417 | Copper amine oxidase, domain 3 {Arthrobacter globi | 100.0 | |
| d3bona1 | 417 | Botulinum neurotoxin {Clostridium botulinum, serot | 100.0 | |
| d1q7ea_ | 417 | Hypothetical protein YfdW {Escherichia coli [TaxId | 100.0 | |
| d1gff1_ | 417 | Microvirus capsid proteins {Bacteriophage G4 [TaxI | 100.0 | |
| d2csga1 | 417 | Hypothetical protein YbiU {Salmonella typhimurium | 100.0 | |
| d1ltka_ | 417 | Phosphoglycerate kinase {Malaria parasite (Plasmod | 100.0 | |
| d1vema2 | 417 | Bacterial beta-amylase {Bacillus cereus [TaxId: 13 | 100.0 | |
| d1q2oa_ | 416 | Nitric oxide (NO) synthase oxygenase domain {Cow ( | 100.0 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 100.0 | |
| d1d8wa_ | 416 | L-rhamnose isomerase {Escherichia coli [TaxId: 562 | 100.0 | |
| d2vnud4 | 416 | Exosome complex exonuclease RRP44 {Saccharomyces c | 100.0 | |
| d1igwa_ | 416 | Isocitrate lyase {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1pb1a_ | 416 | Isocitrate dehydrogenase, ICDH {Escherichia coli [ | 100.0 | |
| d1dnva_ | 415 | Densovirus capsid protein {Galleria mellonella den | 100.0 | |
| d2ieaa2 | 415 | Pyruvate dehydrogenase E1 component, PP module {Es | 100.0 | |
| d1so2a_ | 415 | cGMP-inhibited 3',5'-cyclic phosphodiesterase B, p | 100.0 | |
| d16pka_ | 415 | Phosphoglycerate kinase {Trypanosoma brucei [TaxId | 100.0 | |
| d1qpga_ | 415 | Phosphoglycerate kinase {Baker's yeast (Saccharomy | 100.0 | |
| d2qeec1 | 415 | Uncharacterized protein BH0493 {Bacillus haloduran | 100.0 | |
| d1s5ja2 | 415 | Family B DNA polymerase {Sulfolobus solfataricus [ | 100.0 | |
| d1kbia1 | 414 | Flavocytochrome b2, C-terminal domain {Baker's yea | 100.0 | |
| d2b8na1 | 414 | Putative glycerate kinase (hypothetical protein TM | 100.0 | |
| d1o20a_ | 414 | Gamma-glutamyl phosphate reductase {Thermotoga mar | 100.0 | |
| d1t0la_ | 414 | NADP-dependent isocitrate dehydrogenase {Human (Ho | 100.0 | |
| d1vh4a_ | 413 | Stabilizer of iron transporter SufD {Escherichia c | 100.0 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 100.0 | |
| d1hdia_ | 413 | Phosphoglycerate kinase {Pig (Sus scrofa) [TaxId: | 100.0 | |
| d1lwda_ | 413 | NADP-dependent isocitrate dehydrogenase {Pig (Sus | 100.0 | |
| d2qgma1 | 413 | Succinoglycan biosynthesis protein BC3205 {Bacillu | 100.0 | |
| d1zjca1 | 413 | Aminopeptidase S, AMPS {Staphylococcus aureus [Tax | 100.0 | |
| d1ulva1 | 413 | Glucodextranase, domain A {Arthrobacter globiformi | 100.0 | |
| d1a0tp_ | 413 | Sucrose-specific porin {Enterobacterium (Salmonell | 100.0 | |
| d1ocka_ | 412 | Malonamidase E2 {Bradyrhizobium japonicum [TaxId: | 100.0 | |
| d1yzya1 | 412 | Hypothetical protein HI1011 {Haemophilus influenza | 100.0 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 100.0 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 100.0 | |
| d1rxxa_ | 412 | Arginine deiminase {Pseudomonas aeruginosa [TaxId: | 100.0 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 100.0 | |
| d1ufaa2 | 412 | Hypothetical protein TT1467, N-terminal domain {Th | 100.0 | |
| d1t3ca_ | 411 | Botulinum neurotoxin {Clostridium botulinum, serot | 100.0 | |
| d2afaa1 | 411 | Putative NAG isomerase YihS {Salmonella typhimuriu | 100.0 | |
| d1ux5a_ | 411 | Bni1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 100.0 | |
| d1izoa_ | 411 | Cytochrome p450 152a1 (Bs-beta) {Bacillus subtilis | 100.0 | |
| d2ccaa1 | 410 | Catalase-peroxidase KatG {Mycobacterium tuberculos | 100.0 | |
| d1p1ja1 | 410 | Myo-inositol 1-phosphate synthase {Baker's yeast ( | 100.0 | |
| d1kfsa2 | 410 | DNA polymerase I (Klenow fragment) {Escherichia co | 100.0 | |
| d1s5ja1 | 410 | Exonuclease domain of family B DNA polymerases {Su | 100.0 | |
| d1uuqa_ | 410 | Exomannosidase {Cellvibrio mixtus [TaxId: 39650]} | 100.0 | |
| d2cmza1 | 409 | Spike glycoprotein {Vesicular stomatitis indiana v | 100.0 | |
| d1tv5a1 | 409 | Dihydroorotate dehydrogenase {Plasmodium falciparu | 100.0 | |
| d1qtma2 | 409 | DNA polymerase I (Klenow fragment) {Thermus aquati | 100.0 | |
| d2g0da1 | 409 | Nisin biosynthesis protein NisC {Lactococcus lacti | 100.0 | |
| d1b25a1 | 409 | Formaldehyde ferredoxin oxidoreductase {Archaeon P | 100.0 | |
| d1s9ra_ | 409 | Arginine deiminase {Mycoplasma arginini [TaxId: 20 | 100.0 | |
| g1wht.1 | 409 | Serine carboxypeptidase II {Wheat (Triticum vulgar | 100.0 | |
| d1dkla_ | 409 | Phytase (myo-inositol-hexakisphosphate-3-phosphohy | 100.0 | |
| d1wzaa2 | 409 | Bacterial alpha-amylase {Halothermothrix orenii [T | 100.0 | |
| d1r76a_ | 408 | Polygalacturonic acid lyase (pectate lyase) {Azosp | 100.0 | |
| d1c4oa1 | 408 | Nucleotide excision repair enzyme UvrB {Thermus th | 100.0 | |
| d1f1oa_ | 408 | Adenylosuccinate lyase {Bacillus subtilis [TaxId: | 100.0 | |
| d1h4pa_ | 408 | Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharom | 100.0 | |
| d2hhva2 | 408 | DNA polymerase I (Klenow fragment) {Bacillus stear | 100.0 | |
| d1n11a_ | 408 | Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 100.0 | |
| d1qs0a_ | 407 | 2-oxoisovalerate dehydrogenase (E1B), PP module {P | 100.0 | |
| d1eu8a_ | 407 | D-maltodextrin-binding protein, MBP {Archaeon Ther | 100.0 | |
| d1qhoa4 | 407 | Cyclodextrin glycosyltransferase {Bacillus stearot | 100.0 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 100.0 | |
| d1itka1 | 406 | Catalase-peroxidase KatG {Archaeon Haloarcula mari | 100.0 | |
| d1mwva1 | 406 | Catalase-peroxidase KatG {Burkholderia pseudomalle | 100.0 | |
| d1ei6a_ | 406 | Phosphonoacetate hydrolase {Pseudomonas fluorescen | 100.0 | |
| d1ub2a1 | 406 | Catalase-peroxidase KatG {Synechococcus sp. pcc 79 | 100.0 | |
| d2ayia1 | 406 | Aminopeptidase T {Thermus thermophilus [TaxId: 274 | 100.0 | |
| d3bmva4 | 406 | Cyclodextrin glycosyltransferase {Thermoanaerobact | 100.0 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 100.0 | |
| d2nwwa1 | 405 | Proton glutamate symport protein {Pyrococcus horik | 100.0 | |
| d1h6za3 | 405 | Pyruvate phosphate dikinase, N-terminal domain {Tr | 100.0 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 100.0 | |
| d1lnsa3 | 405 | X-Prolyl dipeptidyl aminopeptidase PepX, middle do | 100.0 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 100.0 | |
| d2b5dx2 | 404 | Alpha-amylase AmyC {Thermotoga maritima [TaxId: 23 | 100.0 | |
| d1re9a_ | 404 | Cytochrome P450-CAM {Pseudomonas putida [TaxId: 30 | 100.0 | |
| d1uyra2 | 404 | Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc | 100.0 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 100.0 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 100.0 | |
| d1h12a_ | 404 | Endo-1,4-beta-xylanase {Pseudoalteromonas haloplan | 100.0 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 100.0 | |
| d1xksa_ | 403 | Nuclear pore complex protein Nup133 {Human (Homo s | 100.0 | |
| d1ueda_ | 403 | p450 monoxygenase OxyC {Amycolatopsis orientalis [ | 100.0 | |
| d1hx0a2 | 403 | Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 982 | 100.0 | |
| d1gwia_ | 403 | Cyp154c1 monooxygenase {Streptomyces coelicolor [T | 100.0 | |
| d3b55a1 | 403 | Succinoglycan biosynthesis protein BC3120 {Bacillu | 100.0 | |
| d1dofa_ | 402 | Adenylosuccinate lyase {Archaeon Pyrobaculum aerop | 100.0 | |
| d2g5da1 | 402 | Membrane-bound lytic murein transglycosylase A, ML | 100.0 | |
| d1xk7a1 | 402 | Crotonobetainyl-CoA:carnitine CoA-transferase, Cai | 100.0 | |
| d1fp3a_ | 402 | N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) | 100.0 | |
| d1z8oa1 | 402 | Cytochrome P450-ERYF {Saccharopolyspora erythraea | 100.0 | |
| g1w2w.1 | 402 | Putative methylthioribose-1-phosphate isomerase Yp | 100.0 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 100.0 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 100.0 | |
| d1q5da_ | 401 | Cytochrome P450epok {Sorangium cellulosum [TaxId: | 100.0 | |
| d1a12a_ | 401 | Regulator of chromosome condensation RCC1 {Human ( | 100.0 | |
| d1iira_ | 401 | UDP-glucosyltransferase GtfB {Amycolatopsis orient | 100.0 | |
| d1rrva_ | 401 | TDP-vancosaminyltransferase GftD {Amycolatopsis or | 100.0 | |
| d2h6fb1 | 401 | Protein farnesyltransferase, beta-subunit {Human ( | 100.0 | |
| d1jdpa_ | 401 | Hormone binding domain of the atrial natriuretic p | 100.0 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 100.0 | |
| d2r7da2 | 401 | Ribonuclease II family protein DR0020 {Deinococcus | 100.0 | |
| d1odoa_ | 401 | Cyp154a1 monooxygenase {Streptomyces coelicolor [T | 100.0 | |
| d1ru4a_ | 400 | Pectate transeliminase {Erwinia chrysanthemi [TaxI | 100.0 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 100.0 | |
| d3ovwa_ | 400 | Cellobiohydrolase I (cellulase, Endoglucanase I, C | 100.0 | |
| d1inpa_ | 400 | Inositol polyphosphate 1-phosphatase {Cow (Bos tau | 100.0 | |
| d1eh9a3 | 400 | Glycosyltrehalose trehalohydrolase, central domain | 100.0 | |
| d2olua2 | 400 | Penicillin-binding protein 2, PBP2 {Staphylococcus | 100.0 | |
| d1oyaa_ | 399 | Old yellow enzyme (OYE) {Lager yeast (Saccharomyce | 100.0 | |
| d1s1fa_ | 399 | Cyp158a2 {Streptomyces coelicolor [TaxId: 1902]} | 100.0 | |
| d2ah2a2 | 399 | Trypanosoma sialidase {Parasitic flagellate protoz | 100.0 | |
| d1jfba_ | 399 | Cytochrome P450-NOR, nitric reductase {Fungus (Fus | 100.0 | |
| d1bn8a_ | 399 | Pectate lyase {Bacillus subtilis [TaxId: 1423]} | 100.0 | |
| d1ojja_ | 399 | Cellobiohydrolase I (cellulase, Endoglucanase I, C | 100.0 | |
| d1vpea_ | 398 | Phosphoglycerate kinase {Thermotoga maritima [TaxI | 100.0 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 100.0 | |
| d1vlja_ | 398 | NADH-dependent butanol dehydrogenase A (TM0820) {T | 100.0 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 100.0 | |
| d1q1la_ | 397 | Chorismate synthase, AroC {Aquifex aeolicus [TaxId | 100.0 | |
| d1vkoa1 | 397 | Myo-inositol 1-phosphate synthase {Caenorhabditis | 100.0 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 100.0 | |
| d1lf6a1 | 397 | Bacterial glucoamylase, C-terminal domain {Thermoa | 100.0 | |
| d1vjva_ | 397 | Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y | 100.0 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 100.0 | |
| d1m7xa3 | 396 | 1,4-alpha-glucan branching enzyme, central domain | 100.0 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 100.0 | |
| d1io1a_ | 395 | Phase 1 flagellin {Salmonella typhimurium [TaxId: | 100.0 | |
| g1f8v.1 | 395 | Alphanodavirus capsid protein {Pariacoto virus [Ta | 100.0 | |
| d2bfda1 | 395 | Branched-chain alpha-keto acid dehydrogenase, PP m | 100.0 | |
| d1nw1a_ | 395 | Choline kinase {Caenorhabditis elegans [TaxId: 623 | 100.0 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 100.0 | |
| d1aora1 | 395 | Aldehyde ferredoxin oxidoreductase {Archaeon Pyroc | 100.0 | |
| d1w36b2 | 395 | Exodeoxyribonuclease V beta chain (RecB), N-termin | 100.0 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 100.0 | |
| d1n40a_ | 395 | Cyp121 monooxygenase (P450 Mt2) {Mycobacterium tub | 100.0 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 100.0 | |
| d1phpa_ | 394 | Phosphoglycerate kinase {Bacillus stearothermophil | 100.0 | |
| d1u1ha1 | 394 | 5-methyltetrahydropteroyltriglutamate--homocystein | 100.0 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 100.0 | |
| d1qo7a_ | 394 | Bacterial epoxide hydrolase {Aspergillus niger [Ta | 100.0 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 100.0 | |
| d2pb1a1 | 394 | Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) | 100.0 | |
| d1lfka_ | 394 | p450 monoxygenase OxyB {Amycolatopsis orientalis [ | 100.0 | |
| d1atia2 | 394 | Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil | 100.0 | |
| d2d3na2 | 394 | Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: | 100.0 | |
| d1q8ia2 | 394 | Family B DNA polymerase {Escherichia coli [TaxId: | 100.0 | |
| d1ldja2 | 394 | Cullin homolog 1, Cul-1 {Human (Homo sapiens) [Tax | 100.0 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 100.0 | |
| d1xlma_ | 393 | D-xylose isomerase {Arthrobacter, strain b3728 [Ta | 100.0 | |
| d1kwga2 | 393 | A4 beta-galactosidase {Thermus thermophilus [TaxId | 100.0 | |
| d1g8ma2 | 393 | AICAR transformylase domain of bifunctional purine | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 100.0 | |
| d1hvxa2 | 393 | Bacterial alpha-amylase {Bacillus stearothermophil | 100.0 | |
| d1e43a2 | 393 | Bacterial alpha-amylase {Chimera (Bacillus amyloli | 100.0 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 100.0 | |
| d2d0ta1 | 392 | Indoleamine 2,3-dioxygenase {Human (Homo sapiens) | 100.0 | |
| d2pula1 | 392 | Methylthioribose kinase MtnK {Bacillus subtilis [T | 100.0 | |
| d1xima_ | 392 | D-xylose isomerase {Actinoplanes missouriensis [Ta | 100.0 | |
| d1yvua2 | 392 | Argonaute homologue Aq_1447 {Aquifex aeolicus [Tax | 100.0 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 100.0 | |
| d1pn3a_ | 391 | TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi | 100.0 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 100.0 | |
| d1nt4a_ | 391 | Glucose-1-phosphatase {Escherichia coli [TaxId: 56 | 100.0 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 100.0 | |
| d1lwha2 | 391 | 4-alpha-glucanotransferase {Thermotoga maritima [T | 100.0 | |
| d4ubpc2 | 390 | alpha-subunit of urease, catalytic domain {Bacillu | 100.0 | |
| d1v6sa_ | 390 | Phosphoglycerate kinase {Thermus thermophilus [Tax | 100.0 | |
| d1nsca_ | 390 | Influenza neuraminidase {Influenza B virus, differ | 100.0 | |
| d1qopb_ | 390 | Tryptophan synthase, beta-subunit {Salmonella typh | 100.0 | |
| d1oj7a_ | 390 | Hypothetical oxidoreductase yqhD {Escherichia coli | 100.0 | |
| d1ud2a2 | 390 | Bacterial alpha-amylase {Bacillus sp., ksm-k38 [Ta | 100.0 | |
| d1sg6a_ | 389 | Dehydroquinate synthase, DHQS {Aspergillus nidulan | 100.0 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 100.0 | |
| d1jiha2 | 389 | DNA polymerase eta {Baker's yeast (Saccharomyces c | 100.0 | |
| d1e9yb2 | 389 | alpha-subunit of urease, catalytic domain {Helicob | 100.0 | |
| d2o3ia1 | 389 | Hypothetical protein CV3147 {Chromobacterium viola | 100.0 | |
| d1f8ea_ | 388 | Influenza neuraminidase {Influenza A virus, differ | 100.0 | |
| d1u7la_ | 388 | Vacuolar ATP synthase subunit C {Baker's yeast (Sa | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 100.0 | |
| d1qxoa_ | 388 | Chorismate synthase, AroC {Streptococcus pneumonia | 100.0 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 100.0 | |
| d2dcfa1 | 388 | 6-aminohexanoate-dimer hydrolase NylC {Flavobacter | 100.0 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 100.0 | |
| d2py5a2 | 388 | phi29 DNA polymerase {Bacteriophage phi-29 [TaxId: | 100.0 | |
| d1q8ia1 | 388 | Exonuclease domain of family B DNA polymerases {Es | 100.0 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 100.0 | |
| d1ku0a_ | 388 | Lipase L1 {Bacillus stearothermophilus [TaxId: 142 | 100.0 | |
| d1x38a1 | 388 | Beta-D-glucan exohydrolase, N-terminal domain {Bar | 100.0 | |
| d1zeea1 | 387 | Hypothetical protein SO4414 {Shewanella oneidensis | 100.0 | |
| d2aepa1 | 387 | Influenza neuraminidase {Influenza A virus, differ | 100.0 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 100.0 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 100.0 | |
| d1zsqa2 | 387 | Myotubularin-related protein 2, C-terminal domain | 100.0 | |
| d1bxba_ | 387 | D-xylose isomerase {Thermus aquaticus, subsp. Ther | 100.0 | |
| d2qp8a1 | 387 | beta-secretase (memapsin) {Human (Homo sapiens) [T | 100.0 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 100.0 | |
| d1ur4a_ | 387 | Beta-1,4-galactanase {Bacillus licheniformis [TaxI | 100.0 | |
| d2ex0a1 | 387 | Alpha-2,3/2,6-sialyltransferase/sialidase {Pasteur | 100.0 | |
| d1r6ta2 | 386 | Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo | 100.0 | |
| d1v8za1 | 386 | Tryptophan synthase, beta-subunit {Archaeon Pyroco | 100.0 | |
| d1muwa_ | 386 | D-xylose isomerase {Streptomyces olivochromogenes | 100.0 | |
| d3c10a1 | 386 | Histone deacetylase 7, HDAC7 {Human (Homo sapiens) | 100.0 | |
| d1v5da_ | 386 | Chitosanase {Bacillus sp., strain k17 [TaxId: 1409 | 100.0 | |
| d1xmxa_ | 385 | Hypothetical protein VC1899 {Vibrio cholerae [TaxI | 100.0 | |
| d1rrma_ | 385 | Lactaldehyde reductase FucO {Escherichia coli [Tax | 100.0 | |
| d1ir6a_ | 385 | Exonuclease RecJ {Thermus thermophilus [TaxId: 274 | 100.0 | |
| d1uhga_ | 385 | Ovalbumin {Hen (Gallus gallus) [TaxId: 9031]} | 100.0 | |
| d1ejxc2 | 385 | alpha-subunit of urease, catalytic domain {Klebsie | 100.0 | |
| d1cf3a1 | 385 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 100.0 | |
| d1n97a_ | 385 | Cyp175a1 {Thermus thermophilus [TaxId: 274]} | 100.0 | |
| d2c5wb1 | 385 | Penicillin-binding protein 1a, transpeptidase doma | 100.0 | |
| d2b9va2 | 385 | Alpha-amino acid ester hydrolase {Acetobacter past | 100.0 | |
| d2ix0a4 | 385 | Exoribonuclease 2, RNB {Escherichia coli [TaxId: 5 | 100.0 | |
| d3c0na2 | 384 | (Pro)aerolysin, pore-forming lobe {Aeromonas hydro | 100.0 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 100.0 | |
| d1mtyb_ | 384 | Methane monooxygenase hydrolase beta subunit {Meth | 100.0 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 100.0 | |
| d1hn0a1 | 384 | Chondroitin ABC lyase I {Proteus vulgaris [TaxId: | 100.0 | |
| d2fvka2 | 384 | Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Sacc | 100.0 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 100.0 | |
| d1vz6a_ | 383 | Glutamate N-acetyltransferase 2 (ornithine acetylt | 100.0 | |
| d1u7ga_ | 383 | Ammonium transporter AmtB {Escherichia coli [TaxId | 100.0 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 100.0 | |
| d1mhyb_ | 383 | Methane monooxygenase hydrolase beta subunit {Meth | 100.0 | |
| d1bo1a_ | 383 | Phosphatidylinositol phosphate kinase IIbeta, PIPK | 100.0 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1imva_ | 383 | Pigment epithelium-derived factor, PEDF {Human (Ho | 100.0 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d2ayna1 | 383 | Ubiquitin carboxyl-terminal hydrolase 14 {Human (H | 100.0 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 100.0 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 100.0 | |
| d1wkva1 | 382 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1ea9c3 | 382 | Maltogenic amylase, central domain {Bacillus sp., | 100.0 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 100.0 | |
| d1t1ua1 | 382 | Choline O-acetyltransferase {Rat (Rattus norvegicu | 100.0 | |
| d1xl7a1 | 382 | Peroxisomal carnitine O-octanoyltransferase, COT { | 100.0 | |
| d1wzla3 | 382 | Maltogenic amylase, central domain {Thermoactinomy | 100.0 | |
| d1j0ha3 | 382 | Neopullulanase, central domain {Bacillus stearothe | 100.0 | |
| d3bvua3 | 381 | Golgi alpha-mannosidase II {Fruit fly (Drosophila | 100.0 | |
| d1by7a_ | 381 | Plasminogen activator inhibitor-2 {Human (Homo sap | 100.0 | |
| d1odza_ | 381 | Mannanase A, ManA {Pseudomonas cellulosa (Cellvibr | 100.0 | |
| d2bo4a1 | 381 | Mannosylglycerate synthase, MGS {Rhodothermus mari | 100.0 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 100.0 | |
| d2guya2 | 381 | Fungal alpha-amylases {Aspergillus oryzae, Taka-am | 100.0 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 100.0 | |
| d2aaaa2 | 381 | Fungal alpha-amylases {Aspergillus niger, acid amy | 100.0 | |
| d1mpxa2 | 381 | Alpha-amino acid ester hydrolase {Xanthomonas citr | 100.0 | |
| d1t6ex_ | 381 | Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu | 100.0 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 100.0 | |
| d1vbga3 | 380 | Pyruvate phosphate dikinase, N-terminal domain {Ma | 100.0 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 100.0 | |
| d1q45a_ | 380 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 100.0 | |
| d1qyia_ | 380 | Hypothetical protein MW1667 (SA1546) {Staphylococc | 100.0 | |
| d1edga_ | 380 | Endoglucanase CelA {Clostridium cellulolyticum [Ta | 100.0 | |
| d1elja_ | 380 | D-maltodextrin-binding protein, MBP {Archaeon Pyro | 100.0 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 100.0 | |
| d1lj5a_ | 379 | Plasminogen activator inhibitor-1 {Human (Homo sap | 100.0 | |
| d3sila_ | 379 | Salmonella sialidase {Salmonella typhimurium, stra | 100.0 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 100.0 | |
| d2icya2 | 378 | UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c | 100.0 | |
| d1xqga_ | 378 | Maspin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1jaea2 | 378 | Animal alpha-amylase {Yellow mealworm (Tenebrio mo | 100.0 | |
| d1o6ca_ | 377 | UDP-N-acetylglucosamine 2-epimerase {Bacillus subt | 100.0 | |
| d1a59a_ | 377 | Citrate synthase {Antarctic bacterium DS2-3R [TaxI | 100.0 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 100.0 | |
| d2d5ja1 | 377 | Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 | 100.0 | |
| d1ci9a_ | 377 | Esterase EstB {Burkholderia gladioli [TaxId: 28095 | 100.0 | |
| d1k8qa_ | 377 | Gastric lipase {Dog (Canis familiaris) [TaxId: 961 | 100.0 | |
| d2i71a1 | 377 | Hypothetical protein SSO1389 {Sulfolobus solfatari | 100.0 | |
| d1jmma_ | 377 | V-region of surface antigen I/II (SA I/II, PAC) {S | 100.0 | |
| d1nm8a1 | 377 | Carnitine acetyltransferase {Human (Homo sapiens) | 100.0 | |
| d1f6da_ | 376 | UDP-N-acetylglucosamine 2-epimerase {Escherichia c | 100.0 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 100.0 | |
| d2vata1 | 376 | Acetyl-CoA:deacetylcephalosporin C acetyltransfera | 100.0 | |
| d1k9oi_ | 376 | Alaserpin (serpin 1) {Tobacco hornworm (Manduca se | 100.0 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 100.0 | |
| d2v3qa1 | 376 | PstS-like phosphate-binding protein {Human (Homo s | 100.0 | |
| d1wu4a1 | 376 | Xylanase Y {Bacillus halodurans [TaxId: 86665]} | 100.0 | |
| d1bhea_ | 376 | Polygalacturonase {Erwinia carotovora, subsp. caro | 100.0 | |
| d2fug41 | 375 | NADH-quinone oxidoreductase chain 4, Nqo4 {Thermus | 100.0 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 100.0 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 100.0 | |
| d1ih7a1 | 375 | Exonuclease domain of family B DNA polymerases {Ba | 100.0 | |
| g1hle.1 | 375 | Elastase inhibitor {Horse (Equus caballus) [TaxId: | 100.0 | |
| d1kbla3 | 375 | Pyruvate phosphate dikinase, N-terminal domain {Cl | 100.0 | |
| d1txka2 | 374 | Glucans biosynthesis protein G (MdoG, OpgG), N-ter | 100.0 | |
| d1ioma_ | 374 | Citrate synthase {Thermus thermophilus [TaxId: 274 | 100.0 | |
| d2a0ua1 | 374 | Initiation factor 2b {Leishmania major [TaxId: 566 | 100.0 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 100.0 | |
| d1nd7a_ | 374 | WW domain-containing protein 1, WWP1 {Human (Homo | 100.0 | |
| d1gwja_ | 374 | Morphinone reductase {Pseudomonas putida [TaxId: 3 | 100.0 | |
| d1rp4a_ | 374 | Endoplasmic oxidoreductin 1, Ero1p {Baker's yeast | 100.0 | |
| d2bvca2 | 374 | Glutamine synthetase, C-terminal domain {Mycobacte | 100.0 | |
| d1so7a_ | 374 | Sialidase 2 (Neu2) {Human (Homo sapiens) [TaxId: 9 | 100.0 | |
| d1kfwa1 | 374 | Psychrophilic chitinase B {Arthrobacter sp., tad20 | 100.0 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 100.0 | |
| d1v4va_ | 373 | UDP-N-acetylglucosamine 2-epimerase {Thermus therm | 100.0 | |
| d1ogmx2 | 373 | Dextranase, catalytic domain {Penicillium miniolut | 100.0 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 100.0 | |
| d1miqa_ | 373 | Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo | 100.0 | |
| d1qo0a_ | 373 | Amide receptor/negative regulator of the amidase o | 100.0 | |
| d1m0wa2 | 373 | Eukaryotic glutathione synthetase ATP-binding doma | 100.0 | |
| d1r5ya_ | 372 | Queosine tRNA-guanine transglycosylase {Zymomonas | 100.0 | |
| d1c3pa_ | 372 | HDAC homologue {Aquifex aeolicus [TaxId: 63363]} | 100.0 | |
| d1j58a_ | 372 | Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil | 100.0 | |
| d1noya_ | 372 | Exonuclease domain of family B DNA polymerases {Ba | 100.0 | |
| d1vkpa_ | 372 | Agmatine iminohydrolase {Thale-cress (Arabidopsis | 100.0 | |
| d1qlpa_ | 372 | Antitrypsin, alpha-1 {Human (Homo sapiens) [TaxId: | 100.0 | |
| g1htr.1 | 372 | Pepsin(ogen) {Human (Homo sapiens), progastricsin | 100.0 | |
| d1teda_ | 372 | Polyketide synthase PKS18 {Mycobacterium tuberculo | 100.0 | |
| d1mkfa_ | 371 | Viral chemokine binding protein m3 {Murid herpesvi | 100.0 | |
| d1r53a_ | 371 | Chorismate synthase, AroC {Baker's yeast (Saccharo | 100.0 | |
| d1to6a_ | 371 | Glycerate kinase GlxK {Neisseria meningitidis, (se | 100.0 | |
| d1aj8a_ | 371 | Citrate synthase {Archaeon Pyrococcus furiosus [Ta | 100.0 | |
| d1c8ba_ | 371 | Germination protease {Bacillus megaterium [TaxId: | 100.0 | |
| d1n7oa1 | 371 | Hyaluronate lyase {Streptococcus pneumoniae [TaxId | 100.0 | |
| d1f1sa1 | 371 | Hyaluronate lyase {Streptococcus agalactiae [TaxId | 100.0 | |
| d1eg1a_ | 371 | Cellobiohydrolase I (cellulase, Endoglucanase I, C | 100.0 | |
| d1r85a_ | 371 | Xylanase {Bacillus stearothermophilus, Xt6 [TaxId: | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 100.0 | |
| d2dexx3 | 370 | Peptidylarginine deiminase Pad4, catalytic C-termi | 100.0 | |
| d2gx8a1 | 370 | Nif3-related protein BC4286 {Bacillus cereus [TaxI | 100.0 | |
| d2hgsa4 | 370 | Eukaryotic glutathione synthetase ATP-binding doma | 100.0 | |
| d3psga_ | 370 | Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} | 100.0 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 100.0 | |
| d1rh9a1 | 370 | Beta-mannanase {Tomato (Lycopersicon esculentum) [ | 100.0 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 100.0 | |
| d2iw1a1 | 370 | Lipopolysaccharide core biosynthesis protein RfaG | 100.0 | |
| d1iq0a2 | 370 | Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi | 100.0 | |
| d1itua_ | 369 | Renal dipeptidase {Human (Homo sapiens) [TaxId: 96 | 100.0 | |
| d1rwha1 | 369 | Chondroitinase AC {Arthrobacter aurescens [TaxId: | 100.0 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 100.0 | |
| d2ewoa1 | 369 | Agmatine iminohydrolase {Streptococcus mutans [Tax | 100.0 | |
| d2heka1 | 369 | Hypothetical protein aq_1910 {Aquifex aeolicus [Ta | 100.0 | |
| g1as4.1 | 369 | Antichymotrypsin, alpha-1 {Human (Homo sapiens) [T | 100.0 | |
| d1ga6a_ | 369 | Serine-carboxyl proteinase, SCP {Pseudomonas sp., | 100.0 | |
| d1laxa_ | 369 | D-maltodextrin-binding protein, MBP {Escherichia c | 100.0 | |
| d1e7ua4 | 369 | Phoshoinositide 3-kinase (PI3K), catalytic domain | 100.0 | |
| d2ncda_ | 368 | Kinesin motor Ncd (non-claret disjunctional) {Frui | 100.0 | |
| d1r8ga_ | 368 | Carboxylate-amine ligase YbdK {Escherichia coli [T | 100.0 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 100.0 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 100.0 | |
| d1f52a2 | 368 | Glutamine synthetase, C-terminal domain {Salmonell | 100.0 | |
| d1pyya4 | 368 | Penicillin-binding protein 2x (pbp-2x), transpepti | 100.0 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 100.0 | |
| d1o7xa_ | 367 | Citrate synthase {Archaeon Sulfolobus solfataricus | 100.0 | |
| d1d3ga_ | 367 | Dihydroorotate dehydrogenase {Human (Homo sapiens) | 100.0 | |
| d1b65a_ | 367 | L-aminopeptidase D-Ala-esterase/amidase DmpA {Ochr | 100.0 | |
| d1iuqa_ | 367 | Glycerol-3-phosphate (1)-acyltransferase {Cushaw s | 100.0 | |
| d1ue8a_ | 367 | Cyp119 {Archaeon Sulfolobus tokodaii [TaxId: 11195 | 100.0 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 100.0 | |
| d1ursa_ | 367 | D-maltodextrin-binding protein, MBP {Alicyclobacil | 100.0 | |
| d1qw9a2 | 367 | Alpha-L-arabinofuranosidase, catalytic domain {Bac | 100.0 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 100.0 | |
| d1moqa_ | 366 | "Isomerase domain" of glucosamine 6-phosphate synt | 100.0 | |
| d1io7a_ | 366 | Cyp119 {Archaeon Sulfolobus solfataricus [TaxId: 2 | 100.0 | |
| d1h6za1 | 366 | Pyruvate phosphate dikinase, C-terminal domain {Tr | 100.0 | |
| d2bvya2 | 366 | Mannanase A, ManA {Cellulomonas fimi [TaxId: 1708] | 100.0 | |
| d1jq5a_ | 366 | Glycerol dehydrogenase {Bacillus stearothermophilu | 100.0 | |
| d1u5ua_ | 366 | Allene oxide synthase-lipoxygenase protein, N-term | 100.0 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 100.0 | |
| d1fn9a_ | 365 | Outer capsid protein sigma 3 {Reovirus [TaxId: 108 | 100.0 | |
| d1um0a_ | 365 | Chorismate synthase, AroC {Helicobacter pylori [Ta | 100.0 | |
| d2pnwa1 | 365 | Membrane-bound lytic murein transglycosylase A, ML | 100.0 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 100.0 | |
| d1u1ha2 | 365 | 5-methyltetrahydropteroyltriglutamate--homocystein | 100.0 | |
| d1w85a_ | 365 | Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus st | 100.0 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 100.0 | |
| d3c8ya1 | 365 | Fe-only hydrogenase, catalytic domain {Clostridium | 100.0 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 100.0 | |
| d1t64a_ | 364 | Histone deacetylase 8, HDAC8 {Human (Homo sapiens) | 100.0 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 100.0 | |
| d2jera1 | 364 | Agmatine iminohydrolase {Enterococcus faecalis [Ta | 100.0 | |
| d1icpa_ | 364 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 100.0 | |
| d1sdma_ | 364 | Kinesin heavy chain-like protein {Potato (Solanum | 100.0 | |
| d1kbla1 | 364 | Pyruvate phosphate dikinase, C-terminal domain {Cl | 100.0 | |
| d1omwa3 | 364 | G-protein coupled receptor kinase 2 {Cow (Bos taur | 100.0 | |
| d1kq3a_ | 364 | Glycerol dehydrogenase {Thermotoga maritima [TaxId | 100.0 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 100.0 | |
| d1us3a2 | 364 | Xylanase 10c {Cellvibrio japonicus [TaxId: 155077] | 100.0 | |
| d1oc7a_ | 364 | Cellobiohydrolase II (Cel6) {Humicola insolens, Ce | 100.0 | |
| d1w0pa3 | 364 | Vibrio cholerae sialidase {Vibrio cholerae [TaxId: | 100.0 | |
| d1m7va_ | 363 | Nitric oxide (NO) synthase oxygenase domain {Bacil | 100.0 | |
| d1zaia1 | 363 | Fructose-1,6-bisphosphate aldolase {Rabbit (Orycto | 100.0 | |
| d1khba1 | 363 | Cytosolic phosphoenolpyruvate carboxykinase (GTP-h | 100.0 | |
| d1zq1a2 | 363 | Glutamyl-tRNA(Gln) amidotransferase subunit D, Gat | 100.0 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 100.0 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 100.0 | |
| d1cnza_ | 363 | 3-isopropylmalate dehydrogenase, IPMDH {Salmonella | 100.0 | |
| d1onha_ | 363 | AMPC beta-Lactamase, class C {Enterobacter cloacae | 100.0 | |
| d1nc5a_ | 363 | Hypothetical protein YteR {Bacillus subtilis [TaxI | 100.0 | |
| d1kwfa_ | 363 | CelA cellulase {Clostridium thermocellum [TaxId: 1 | 100.0 | |
| d2a1ha1 | 363 | Branched-chain aminoacid aminotransferase {Human ( | 100.0 | |
| d1umga_ | 362 | ST0318 {Archaeon Sulfolobus tokodaii [TaxId: 11195 | 100.0 | |
| d1gqea_ | 362 | Polypeptide chain release factor 2 (RF2) {Escheric | 100.0 | |
| d1umda_ | 362 | Branched-chain alpha-keto acid dehydrogenase, PP m | 100.0 | |
| d2pl5a1 | 362 | Homoserine O-acetyltransferase {Leptospira interro | 100.0 | |
| d2drwa1 | 362 | D-Amino acid amidase DaaA {Ochrobactrum anthropi [ | 100.0 | |
| d1v8ka_ | 362 | Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090 | 100.0 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 100.0 | |
| d3thia_ | 362 | Thiaminase I {Paenibacillus thiaminolyticus [TaxId | 100.0 | |
| d1nqka_ | 362 | Alkanesulfonate monooxygenase SsuD {Escherichia co | 100.0 | |
| d1vlca_ | 362 | 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga | 100.0 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 100.0 | |
| d2gjxa1 | 362 | beta-hexosaminidase A {Human (Homo sapiens) [TaxId | 100.0 | |
| d1q8ya_ | 362 | Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d1qjwa_ | 362 | Cellobiohydrolase II (Cel6) {Trichoderma reesei, C | 100.0 | |
| d2ozla1 | 361 | E1-beta subunit of pyruvate dehydrogenase (PP modu | 100.0 | |
| d1x1ia1 | 361 | Xanthan lyase {Bacillus sp. gl1 [TaxId: 84635]} | 100.0 | |
| d1dhsa_ | 361 | Deoxyhypusine synthase, DHS {Human (Homo sapiens) | 100.0 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 100.0 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 100.0 | |
| d1lt7a_ | 361 | Betaine-homocysteine S-methyltransferase {Human (H | 100.0 | |
| d1rqga2 | 361 | Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys | 100.0 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 100.0 | |
| d1pe9a_ | 361 | Pectate lyase {Erwinia chrysanthemi, type A [TaxId | 100.0 | |
| d1mxga2 | 361 | Bacterial alpha-amylase {Archaeon Pyrococcus woese | 100.0 | |
| d1qo5a_ | 360 | Fructose-1,6-bisphosphate aldolase {Human (Homo sa | 100.0 | |
| d1sq1a_ | 360 | Chorismate synthase, AroC {Campylobacter jejuni [T | 100.0 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 100.0 | |
| d1jdwa_ | 360 | L-arginine: glycine amidinotransferase {Human (Hom | 100.0 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 100.0 | |
| d1xfia_ | 360 | Hypothetical protein At2g17340 {Thale cress (Arabi | 100.0 | |
| d1oxwa_ | 360 | Patatin {Heartleaf nightshade (Solanum cardiophyll | 100.0 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 100.0 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 100.0 | |
| d2jbwa1 | 360 | 2,6-dihydropseudooxynicotine hydrolase {Arthrobact | 100.0 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 100.0 | |
| d4bcla_ | 359 | Bacteriochlorophyll A protein {Prosthecochloris ae | 100.0 | |
| d1goxa_ | 359 | Glycolate oxidase {Spinach (Spinacia oleracea) [Ta | 100.0 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 100.0 | |
| d1yvra1 | 359 | 60-kda SS-aARo ribonucleoprotein {African clawed f | 100.0 | |
| d1x74a1 | 359 | 2-methylacyl-CoA racemase Mcr {Mycobacterium tuber | 100.0 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 100.0 | |
| d2hrca1 | 359 | Ferrochelatase {Human (Homo sapiens) [TaxId: 9606] | 100.0 | |
| d1idka_ | 359 | Pectin lyase {Aspergillus niger, type A [TaxId: 50 | 100.0 | |
| d1qcxa_ | 359 | Pectin lyase {Aspergillus niger, type B [TaxId: 50 | 100.0 | |
| d1o2da_ | 359 | Alcohol dehydrogenase TM0920 {Thermotoga maritima | 100.0 | |
| d2hdsa1 | 358 | AMPC beta-Lactamase, class C {Escherichia coli, ce | 100.0 | |
| g1lq8.1 | 358 | Protein C inhibitor {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1ecea_ | 358 | Endocellulase E1 {Acidothermus cellulolyticus [Tax | 100.0 | |
| d1m7ja3 | 358 | N-acyl-D-aminoacid amidohydrolase, catalytic domai | 100.0 | |
| d1dosa_ | 358 | Fructose-bisphosphate aldolase (FBP aldolase) {Esc | 100.0 | |
| d1jkma_ | 358 | Carboxylesterase {Bacillus subtilis, brefeldin A e | 100.0 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 100.0 | |
| d1edqa2 | 358 | Chitinase A, catalytic domain {Serratia marcescens | 100.0 | |
| d1taza_ | 357 | Catalytic domain of cyclic nucleotide phosphodiest | 100.0 | |
| d2qapa1 | 357 | Fructose-1,6-bisphosphate aldolase {Trypanosome (L | 100.0 | |
| d2b61a1 | 357 | Homoserine O-acetyltransferase {Haemophilus influe | 100.0 | |
| d1a05a_ | 357 | 3-isopropylmalate dehydrogenase, IPMDH {Thiobacill | 100.0 | |
| d1yyda1 | 357 | Fungal peroxidase (ligninase) {Basidomycetos fungu | 100.0 | |
| d1t1ga_ | 357 | Serine-carboxyl proteinase, SCP {Bacillus novosp. | 100.0 | |
| d1gcya2 | 357 | G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase | 100.0 | |
| d2amxa1 | 357 | Adenosine deaminase (ADA) {Plasmodium yoelii [TaxI | 100.0 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 100.0 | |
| d1g01a_ | 357 | Alkaline cellulase K catalytic domain {Bacillus sp | 100.0 | |
| d1mppa_ | 357 | Pepsin {Mucor pusillus [TaxId: 4840]} | 100.0 | |
| d16vpa_ | 356 | Conserved core of transcriptional regulatory prote | 100.0 | |
| d1r3sa_ | 356 | Uroporphyrinogen decarboxylase, UROD {Human (Homo | 100.0 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 100.0 | |
| d1v53a1 | 356 | 3-isopropylmalate dehydrogenase, IPMDH {Bacillus c | 100.0 | |
| d1w8oa3 | 356 | Micromonospora sialidase, N-terminal domain {Micro | 100.0 | |
| d1lbqa_ | 356 | Ferrochelatase {Baker's yeast (Saccharomyces cerev | 100.0 | |
| d1jaka1 | 356 | beta-N-acetylhexosaminidase {Streptomyces plicatus | 100.0 | |
| d1l0wa3 | 356 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 100.0 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 100.0 | |
| d2ebsa2 | 356 | Oligoxyloglucan reducing end-specific cellobiohydr | 100.0 | |
| d1vbga1 | 356 | Pyruvate phosphate dikinase, C-terminal domain {Ma | 100.0 | |
| d1goia2 | 356 | Chitinase B, catalytic domain {Serratia marcescens | 100.0 | |
| d3bu7a1 | 355 | Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [ | 100.0 | |
| d1fuia2 | 355 | L-fucose isomerase, N-terminal and second domains | 100.0 | |
| d2b1pa1 | 355 | c-jun N-terminal kinase (jnk3s) {Human (Homo sapie | 100.0 | |
| d1luca_ | 355 | Bacterial luciferase alpha chain, LuxA {Vibrio har | 100.0 | |
| d1jbqa_ | 355 | Cystathionine beta-synthase {Human (Homo sapiens) | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| g1mtp.1 | 355 | Thermopin {Thermobifida fusca [TaxId: 2021]} | 100.0 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 100.0 | |
| d1iq8a1 | 355 | Archaeosine tRNA-guanine transglycosylase, N-termi | 100.0 |
| >d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase, central domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Glycosyltrehalose trehalohydrolase, central domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=100.00 E-value=0 Score=31702.72 Aligned_cols=1 Identities=0% Similarity=-0.427 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~w~~~~~~~~~~~~~viYe~~~~~f~~~Gd~~g~~~~ldyl~~LGv~~i~L~Pv~~~~~~~~~GY~~~d~~~vdp~~G 80 (420)
T d2bhua3 1 TFDWTDADWHGIKLADCVFYEVHVGTFTPEGTYRAAAEKLPYLKELGVTAIQVMPLAAFDGQRGWGYDGAAFYAPYAPYG 80 (420)
T ss_dssp SSCCCCTTCCCCCGGGCCEEEECHHHHSSSCSHHHHHHTHHHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEECGGGC
T ss_pred CCCCCCCCCCCCCCCCCEEEEEEHHHCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 96899989798884224899996002188999999998679999769998995998768888998888566888685659
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~d~~~lv~~aH~~gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~dlN~~np~v~~~~~~~~~~Wl~~~GVD 160 (420)
T d2bhua3 81 RPEDLMALVDAAHRLGLGVFLDVVYNHFGPSGNYLSSYAPSYFTDRFSSAWGMGLDYAEPHMRRYVTGNARMWLRDYHFD 160 (420)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSCCCSSSCCHHHHCGGGEEEEEECSSSEEECTTSHHHHHHHHHHHHHHHHHHCCS
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEECCCCC
T ss_conf 99999999999974054534465535667777633334443334554322345545368699999988764032014653
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 GfR~D~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (420)
T d2bhua3 161 GLRLDATPYMTDDSETHILTELAQEIHELGGTHLLLAEDHRNLPDLVTVNHLDGIWTDDFHHETRVTLTGEQEGYYAGYR 240 (420)
T ss_dssp EEEETTGGGCCCCSSSCHHHHHHHHHHTTCSCCEEEEECSSCCTHHHHTTCCSEEECTHHHHHHHHHHHCCCSGGGGGCC
T ss_pred EEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCC
T ss_conf 78873333202122310079998888764687425620357753121001125422323210444301334445312330
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~nHD~~~~~~~~~r~~~~~~~~~~~~k~a~~~ll 320 (420)
T d2bhua3 241 GGAEALAYTIRRGWRYEGQFWAVKGEEHERGHPSDALEAPNFVYCIQNHDQIGNRPLGERLHQSDGVTLHEYRGAAALLL 320 (420)
T ss_dssp CSHHHHHHHHHHSSSCEEEEECCTTCCEEEECCCTTCCGGGEEEESCCHHHHHTSTTCCCGGGSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHCHHHHHCCCCCCCCHHHEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 26678999985144446520443153554126433455213034321566323553112356643565999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 t~pG~P~iy~GdEig~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 400 (420)
T d2bhua3 321 TLPMTPLLFQGQEWAASTPFQFFSDHAGELGQAVSEGRKKEFGGFSGFSGEDVPDPQAEQTFLNSKLNWAEREGGEHART 400 (420)
T ss_dssp HSSSEEEEETTGGGTCSSCCCCCCCCCHHHHHHHHHHHHHHC---------CCCCTTSHHHHHTTSCCSGGGGSHHHHHH
T ss_pred HCCCCCEEECCHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHH
T ss_conf 48998798577511789986323456402203544466311367776665557886555544456678788623476899
Q ss_pred -------------------C
Q ss_conf -------------------9
Q 000711 482 -------------------S 482 (1338)
Q Consensus 482 -------------------s 482 (1338)
-
T Consensus 401 ~~~yr~Li~lRk~~p~l~~~ 420 (420)
T d2bhua3 401 LRLYRDLLRLRREDPVLHNR 420 (420)
T ss_dssp HHHHHHHHHHHHHCTTTTCC
T ss_pred HHHHHHHHHHHHCCHHHHCC
T ss_conf 99999999999568987575
|
| >d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ) {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: IF3-like superfamily: EPT/RTPC-like family: Enolpyruvate transferase, EPT domain: UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ) species: Enterobacter cloacae [TaxId: 550]
Probab=100.00 E-value=0 Score=31632.07 Aligned_cols=1 Identities=0% Similarity=-1.091 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 M~~~~i~g~~~L~G~V~ipgsKS~s~Rali~aaLa~g~s~I~n~l~s~D~~~~~~al~~LG~~I~~~~~~~I~~~~~~~~ 80 (419)
T d1ejda_ 1 MDKFRVQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERDGSVWIDASNVNNF 80 (419)
T ss_dssp CEEEEEEECCCCEEEEECCBCHHHHHHHHHHGGGBSSCEEEESCCCCHHHHHHHHHHHHTTCEEEESSSEEEECTTCCCC
T ss_pred CCEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCEEEECCEEEEECCCCCCC
T ss_conf 98699948890477997888389999999999984998999259901999999999997799899898799989997777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~t~~~~~~~~a~~~~~~~~l~Gd~sL~~RPm~~li~~L~~lGa~i~~~~g~~~~~i~g~l~g~~~~~~~ 160 (419)
T d1ejda_ 81 SAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGCAIGARPVDLHIFGLEKLGAEIKLEEGYVKASVNGRLKGAHIVMDK 160 (419)
T ss_dssp EECHHHHTTCGGGGGGHHHHHHHHSEEEEECCCCSCCSSCTTHHHHHHHHHTTCEEEEETTEEEEECSSSCBCCEEECSS
T ss_pred CCCHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECCCCEEEECCCCCCCCEEECCC
T ss_conf 66554540354320024425665277524666643457774267889998536169962892445337886674674587
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~Ssq~~s~llla~~~~~g~~~i~~~~~~~~i~~t~~~l~~~G~~i~~~~~~~~~i~g~~~~~~~~~~V~~D~ssAa~~~~ 240 (419)
T d1ejda_ 161 VSVGATVTIMSAATLAEGTTIIENAAREPEIVDTANFLVALGAKISGQGTDRITIEGVERLGGGVYRVLPDRIETGTFLV 240 (419)
T ss_dssp CCHHHHHHHHHHHTTSBSEEEEETCCCCHHHHHHHHHHHHTTCEEECTTSSEEEEECCSCBCCEEEECCBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCEEEECCCCEEEEECCCCCCCCCCEEECCHHHHHHHHHH
T ss_conf 62567788984455237963542024441566677776522010011795499980542346774053570664311333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 aa~i~g~~i~i~~~~~~~~~~~~~~l~~mg~~i~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 320 (419)
T d1ejda_ 241 AAAISGGKIVCRNAQPDTLDAVLAKLREAGADIETGEDWISLDMHGKRPKAVTVRTAPHPAFPTDMQAQFTLLNLVAEGT 320 (419)
T ss_dssp HHHTTTCEEEEESCCGGGCHHHHHHHHHTTCEEEECSSEEEEECTTCCCBCCCEECCSTTSCCGGGHHHHHHHHHTSBSE
T ss_pred HHCCCCCEEECCCCCHHHHHHHHHHHHHHCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEECCC
T ss_conf 22156865521677806778898876642313997377699997676544300256632234421145541222187361
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~~~ke~dr~~~~~~eL~klG~~v~~~~d~l~I~G~~~l~g~~v~~~DHRiAMa~aia~l~~~g~~~I~~~~~i~~SyP 400 (419)
T d1ejda_ 321 GVITETIFENRFMHVPELIRMGAHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYE 400 (419)
T ss_dssp EEEECCSCSSCCTHHHHHHHTTCEEEEETTEEEEECCSCCBCCEECCSSHHHHHHHHHHHHHSBEEEEECCTHHHHHHSS
T ss_pred EEEEEECCCHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCEECCCCHHHHHHHHHHHHHCCCCEEECCCEEEECCCH
T ss_conf 67764023438789999996889799969999997999863761613838999999999981999499836137868734
Q ss_pred ------------------C
Q ss_conf ------------------9
Q 000711 482 ------------------S 482 (1338)
Q Consensus 482 ------------------s 482 (1338)
-
T Consensus 401 ~F~~~l~~LGa~I~~~~~~ 419 (419)
T d1ejda_ 401 RIEDKLRALGANIERVKGE 419 (419)
T ss_dssp SHHHHHHTTTCEEEEEECC
T ss_pred HHHHHHHHCCCEEEEECCC
T ss_conf 0999999679899997179
|
| >d2df7a1 b.121.4.9 (A:11-429) Birnavirus VP2 {Infectious bursal disease virus [TaxId: 10995]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) superfamily: Positive stranded ssRNA viruses family: Birnaviridae-like VP domain: Birnavirus VP2 species: Infectious bursal disease virus [TaxId: 10995]
Probab=100.00 E-value=0 Score=31640.19 Aligned_cols=1 Identities=0% Similarity=-1.822 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~ylksll~PetgpasIPDD~~~rH~l~~etstyNL~~~~sGsGllv~fp~~P~s~vGaHY~~~~~~~l~FDq~l~TsQ 80 (419)
T d2df7a1 1 IVPFIRSLLMPTTGPASIPDDTLEKHTLRSETSTYNLTVGDTGSGLIVFFPGFPGSIVGAHYTLQSNGNYKFDQMLLTAQ 80 (419)
T ss_dssp CCHHHHHHHCGGGCCCCCCSSCCCCBEEEEEEEEEEEECCTTSCEEEEECTTCSSSEEEEEEEECTTSCEEEEEEEECSS
T ss_pred CCHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEHHHHHHHH
T ss_conf 91465554285678878971788877542033045369726885699991799875210278972788576465556667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 dLkk~~nYgRliSr~~~i~SstLPaGvYAlnGT~Na~tf~GslSEv~~~sYn~lmS~ttN~~DKv~NvLV~~GVtVLsLP 160 (419)
T d2df7a1 81 NLPASYNYCRLVSRSLTVRSSTLPGGVYALNGTINAVTFQGSLSELTDVSYNGLMSATANINDKIGNVLVGEGVTVLSLP 160 (419)
T ss_dssp CGGGTEEEEEEEEEEEEEEECCCCTTCCBCCCEEEEEEESSCGGGCSCCSTTGGGGSCSCGGGEEEEEETTTCEEEECCC
T ss_pred HHHHHHCHHHHHCEEEEEEECCCCCEEEEECCEEEEEEEECCHHHHHCCCHHHHEECCCCHHHHHCCEEECCCEEEEECC
T ss_conf 66766333321002466651357743455246154589824667600246101002126802530789823864999757
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 TgfD~pYVRLgDetP~~gl~p~~~a~ct~a~~PR~Y~I~~a~~yq~~sq~q~gGtt~Tlfs~NiDavtSlsVtGdivFq~ 240 (419)
T d2df7a1 161 TSYDLGYVRLGDPIPAIGLDPKMVATCDSSDRPRVYTITAADDYQFSSQYQSGGVTITLFSANIDAITSLSIGGELVFHT 240 (419)
T ss_dssp SCSSCCCEECCEECCCCCSCTTCCCEECCCSSCEEEEEEEEEEEEEEEECCTTCEEEEEEEEEEEESSCEEEEEEEEEEC
T ss_pred CCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEE
T ss_conf 66788735647888765778765430365568733575367545547755678688898750001104267400699972
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~dati~~IG~DGt~vi~~avas~nGlt~G~dn~~pfnlviPT~eITqPITsIKLeivt~k~gg~ag~~~s~~~~ 320 (419)
T d2df7a1 241 SVHGLALDATIYLIGFDGTTVITRAVASDNGLTTGIDNLMPFNLVIPTNEITQPITSIKLEIVTSKSGGQAGDQMSWSAS 320 (419)
T ss_dssp SSSSEEEEEEEEEEETTSCEEEEEEEEEEEECCTTSCEEEEEEEEECGGGCCSCEEEEEEEEEEEETTCCTTCEEEEEEE
T ss_pred CCCCCEEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCC
T ss_conf 36651873799996326974788899706765356355443103236776775512789999952136754753222456
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 gs~svT~~gGN~PGvLRPvTlVAYE~vapgsilTVaGVSNyELIPNPeL~KN~~t~yG~~dP~~l~y~K~iLs~Re~L~i 400 (419)
T d2df7a1 321 GSLAVTIHGGNYPGALRPVTLVAYERVATGSVVTVAGVSNFELIPNPELAKNLVTEYGRFDPGAMNYTKLILSERERLGI 400 (419)
T ss_dssp EEEEEEETTTTSTTSSCCEEEEEEESCCTTCEEEEEEEEEEEEEECHHHHTTCCCBCCCCCTTHHHHHHHHHHTHHHHTC
T ss_pred CCEEEEECCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCEECCCHHHHHCCCCCCCCCCHHHCCHHHHHHCCHHHCCC
T ss_conf 64699965887778768658999840257746999602451324897897406332356583434288777434311486
Q ss_pred ------------------C
Q ss_conf ------------------9
Q 000711 482 ------------------S 482 (1338)
Q Consensus 482 ------------------s 482 (1338)
.
T Consensus 401 rtvw~~~~Y~~~~~~f~e~ 419 (419)
T d2df7a1 401 KTVWPTREYTDFREYFMEV 419 (419)
T ss_dssp CSEEEHHHHHHHHHHHHHH
T ss_pred EEEECHHHHHHHHHHHHCC
T ss_conf 3660277878999887439
|
| >d1om4a_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Nitric oxide (NO) synthase oxygenase domain superfamily: Nitric oxide (NO) synthase oxygenase domain family: Nitric oxide (NO) synthase oxygenase domain domain: Nitric oxide (NO) synthase oxygenase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=0 Score=31563.69 Aligned_cols=1 Identities=0% Similarity=-1.425 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~kn~~~~~~~~dtlh~~~~~~~~C~~~~C~gs~m~p~~~~~~p~~~~~~e~ll~~A~~Fi~qyy~e~~~~~~~~~~ 80 (418)
T d1om4a_ 1 RFLKVKNWETDVVLTDTLHLKSTLETGCTEHICMGSIMLPSQHTRKPEDVRTKDQLFPLAKEFLDQYYSSIKRFGSKAHM 80 (418)
T ss_dssp CCEEEEBTTTCCEEEECGGGGCCSCCSCCSSCBCTTCSCC-----------CHHHHHHHHHHHHHHHHHHTTCTTSHHHH
T ss_pred CCEEEEECCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 95245540478756320434167889987564366222453457888889987899999999999999863435868999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~Rl~ev~~eI~~tGtY~~T~~EL~~GAk~AWRNs~RCIGRi~W~~L~V~D~R~v~t~~~mfeal~~Hi~~ATN~G~Ir~~ 160 (418)
T d1om4a_ 81 DRLEEVNKEIESTSTYQLKDTELIYGAKHAWRNASRCVGRIQWSKLQVFDARDCTTAHGMFNYICNHVKYATNKGNLRSA 160 (418)
T ss_dssp HHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHTCTTCTTGGGTTCCEEEECTTCCSHHHHHHHHHHHHHHHHGGGSCCCE
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 99999999997455620899999887899870454233500116571565678999899999999999997079987623
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ITVFpp~~~~~~~~RIwN~QLIrYAGY~~~dGsiiGDPa~vefT~~c~~lGW~~~~t~FDvLPLviq~~g~~p~~feiP~ 240 (418)
T d1om4a_ 161 ITIFPQRTDGKHDFRVWNSQLIRYAGYKQPDGSTLGDPANVQFTEICIQQGWKAPRGRFDVLPLLLQANGNDPELFQIPP 240 (418)
T ss_dssp EEECCCCSSSSSCCEECSSBSSCBCEEECTTSCEEECGGGHHHHHHHHTTTCCCCCCTTCBCCEEEECTTCCCEEECCCG
T ss_pred EEECCCCCCCCCCCEEECHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEEEECCH
T ss_conf 89737988899986565488886626568998764783137999999976898999987702089997899972574887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 elvlEV~i~HP~~~wf~~LgLkWyavPaiSnM~L~iGGi~y~aaPFNGWYM~TEIgaRNl~D~~RYN~L~~VA~~mGLDT 320 (418)
T d1om4a_ 241 ELVLEVPIRHPKFDWFKDLGLKWYGLPAVSNMLLEIGGLEFSACPFSGWYMGTEIGVRDYCDNSRYNILEEVAKKMDLDM 320 (418)
T ss_dssp GGCCEEECCCSSCTTGGGGCCEEESCCCBCSCEEEETTEEESCCCEECCCBHHHHHTHHHHCTTTTCCHHHHHHHHTCCC
T ss_pred HHEEEECCCCCCCHHHHHCCCCEEECCHHCCCEEEECCEEECCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 78246435598975477559837625011365232088855346745341123365415667565664899999849788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~~sLWkDrAlvElN~AVLhSF~~~gVtIvDHHtas~~F~~~~~~E~~~~r~~pgdW~WlvPP~Sgs~tpvfH~~~~n~ 400 (418)
T d1om4a_ 321 RKTSSLWKDQALVEINIAVLYSFQSDKVTIVDHHSATESFIKHMENEYRCRGGCPADWVWIVPPMSGSITPVFHQEMLNY 400 (418)
T ss_dssp SCGGGCHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHSCCCCCHHHHSCSSSGGGSGGGGBCCCBC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCHHHHHHHHCC
T ss_conf 99740577889999999999899887964805278999999999999981899998852777888653441677765353
Q ss_pred -----------------C
Q ss_conf -----------------9
Q 000711 482 -----------------S 482 (1338)
Q Consensus 482 -----------------s 482 (1338)
=
T Consensus 401 ~l~P~f~yq~~~w~th~w 418 (418)
T d1om4a_ 401 RLTPSFEYQPDPWNTHVW 418 (418)
T ss_dssp CCSSEEECCCCGGGTCCC
T ss_pred CCCCCCCCCCCCCCCCCC
T ss_conf 147886557986446789
|
| >d2gp4a2 d.334.1.1 (A:1-418) 6-phosphogluconate dehydratase EDD {Shewanella oneidensis [TaxId: 70863]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: IlvD/EDD N-terminal domain-like superfamily: IlvD/EDD N-terminal domain-like family: lvD/EDD N-terminal domain-like domain: 6-phosphogluconate dehydratase EDD species: Shewanella oneidensis [TaxId: 70863]
Probab=100.00 E-value=0 Score=31558.02 Aligned_cols=1 Identities=0% Similarity=-1.025 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~i~~vt~rI~~RS~~~r~~Yl~~i~~~~~~~~~r~~l~c~nlAh~~aa~~~~dk~~l~d~~kP~IGIvns~~d~~pc 80 (418)
T d2gp4a2 1 MHSVVQSVTDRIIARSKASREAYLAALNDARNHGVHRSSLSCGNLAHGFAACNPDDKNALRQLTKANIGIITAFNDMLSA 80 (418)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----------------------------------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 97179999999999708779999999999875488711135521777887068302556763179969998352346464
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 h~hl~~l~~~vK~gv~~~gg~~~~~~~~p~~cDGit~G~~GM~~SL~SRelIA~siE~~~~~~~~Dg~V~l~~CDK~vPG 160 (418)
T d2gp4a2 81 HQPYETYPDLLKKACQEVGSVAQVAGGVPAMCDGVTQGQPGMELSLLSREVIAMATAVGLSHNMFDGALLLGICDKIVPG 160 (418)
T ss_dssp ---------CCC---CCCCEEEEECC-BC--CCCCCCSSSGGGGHHHHHHHHHHHHHHHHTTCCCSEEEEECCSTTTTHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHH
T ss_conf 24299999999999997178663567645534651378653013130022789899998624765617997338998768
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~lMaa~r~n~lPsI~v~gGpm~~G~~~~~~~~~~~~~~~G~i~~~el~~~E~~a~p~~GtC~~mgTANTm~~l~EalGl~ 240 (418)
T d2gp4a2 161 LLIGALSFGHLPMLFVPAGPMKSGIPNKEKARIRQQFAQGKVDRAQLLEAEAQSYHSAGTCTFYGTANSNQLMLEVMGLQ 240 (418)
T ss_dssp HHHHHHTTTTSCEEECCCCC-------------------CCTHHHHHHHTTSSCHHHHHHHHHCC-----CHHHHHTTCS
T ss_pred HHHHHHHCCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99999843678779971577689746777725753032233569999999874668878663267798999999971567
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 LPGsa~vpa~~~~r~~~a~~ag~~~~~~~~~~~~~~~~~dIlt~~a~~NAi~~~~A~GGSTNavlHL~AIA~eaGi~l~l 320 (418)
T d2gp4a2 241 LPGSSFVNPDDPLREALNKMAAKQVCRLTELGTQYSPIGEVVNEKSIVNGIVALLATGGSTNLTMHIVAAARAAGIIVNW 320 (418)
T ss_dssp CTTGGGSCTTCHHHHHHHHHHHHHHHHTSTTSSSCCCHHHHSSHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHTTCCCCH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHCCCCCCH
T ss_conf 52124788861899999998999999999851267897786199999711168760562675320629999654898989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~dfd~is~~~P~L~~l~P~G~~~m~d~~~AGGvp~v~k~L~~~glLh~D~~TVtG~tl~e~l~~~~~~~~~i~~~~~p~~ 400 (418)
T d2gp4a2 321 DDFSELSDAVPLLARVYPNGHADINHFHAAGGMAFLIKELLDAGLLHEDVNTVAGYGLRRYTQEPKLLDGELRWVDGPTV 400 (418)
T ss_dssp HHHHHHHTTCCBCBCCGGGSSCCHHHHHHHTHHHHHHHHHHHHTCSCCCCEETTEECGGGGGEEEEEETTEEEEEECCSS
T ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEECCCCCC
T ss_conf 99999857888544441598621889876069999999998788856999883886799997077766774000468777
Q ss_pred -----------------C
Q ss_conf -----------------9
Q 000711 482 -----------------S 482 (1338)
Q Consensus 482 -----------------s 482 (1338)
-
T Consensus 401 ~~d~~VIrp~~~P~~~~G 418 (418)
T d2gp4a2 401 SLDTEVLTSVATPFQNNG 418 (418)
T ss_dssp CSCTTTBCCSSSCSBSSC
T ss_pred CCCCCEECCCCCCCCCCC
T ss_conf 899887576555779999
|
| >d1f61a_ c.1.12.7 (A:) Isocitrate lyase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Isocitrate lyase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=0 Score=31554.84 Aligned_cols=1 Identities=0% Similarity=-0.526 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
.
T Consensus 1 ~~~~~~~~~~~~~~~~w~~~pRw~~i~r~yta~dv~~lrgs~~~~~~~a~~~a~~Lr~lL~~~~~v~~~Ga~d~~~A~~~ 80 (418)
T d1f61a_ 1 ASVVGTPKSAEQIQQEWDTNPRWKDVTRTYSAEDVVALQGSVVEEHTLARRGAEVLWEQLHDLEWVNALGALTGNMAVQQ 80 (418)
T ss_dssp CCCTTCCCCHHHHHHHHHHCGGGTTCCCSSCHHHHHHTSTTCCCCCHHHHHHHHHHHHHHHHSSCEEEEBCCSHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHH
T ss_conf 98456504599999998629882778799899999986688775425789999999999836997884144778999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~kaGf~aiY~SG~~vaa~~s~s~~g~PD~gl~~~~ev~~~v~~I~~~~~~~d~~~~~~~~~~~~~~~~PIIaDaDtGfG~ 160 (418)
T d1f61a_ 81 VRAGLKAIYLSGWQVAGDANLSGHTYPDQSLYPANSVPQVVRRINNALQRADQIAKIEGDTSVENWLAPIVADGEAGFGG 160 (418)
T ss_dssp HHTTCSCEEECHHHHHHHCCTTCCCCCSSSCSCTTHHHHHHHHHHHHHHHHHHHHHHHTCCSCSCSSCCEEEECTTCSSS
T ss_pred HHHCCCEEEECHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCC
T ss_conf 98199889854276523454556886665555167899999999988788999998740466433567768753333453
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~nv~rtvk~~i~AGaAgihiEDQ~~~~KkCGH~~GK~lvp~~e~~~ki~Aa~~a~d~~~~~~~iiARTDA~~a~~i~s~ 240 (418)
T d1f61a_ 161 ALNVYELQKALIAAGVAGSHWEDQLASEKKCGHLGGKVLIPTQQHIRTLTSARLAADVADVPTVVIARTDAEAATLITSD 240 (418)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEESBCGGGCBCSTTCBCEECCHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTTCCEESCS
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHCCCCCC
T ss_conf 78999999999983786899734677776556667766688999999999998766437998489997160232355333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~d~~D~~~i~g~rt~eG~y~~~~g~e~AI~Ra~aya~~gd~i~~e~~~~~~ee~~~f~~~v~~~~~~~~l~~~~sPsf~w 320 (418)
T d1f61a_ 241 VDERDQPFITGERTREGFYRTKNGIEPCIARAKAYAPFADLIWMETGTPDLEAARQFSEAVKAEYPDQMLAYNCSPSFNW 320 (418)
T ss_dssp CSTTTGGGEEEEECTTSCEEECCSHHHHHHHHHHHGGGCSEEEECCSSCCHHHHHHHHHHHHTTCTTCEEEEECCSSSCH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCCCHHHCCCCCCCCCCC
T ss_conf 43233444455457664001457789999999963543671885057899999999986248873332035676567770
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~~~~~~~~~~~~eL~~~Gy~~~~i~la~~~a~~~a~~~la~~~~~~Gm~ay~elQ~re~~~~~~Gy~~~khQ~~vG~~ 400 (418)
T d1f61a_ 321 KKHLDDATIAKFQKELAAMGFKFQFITLAGFHALNYSMFDLAYGYAQNQMSAYVELQEREFAAEERGYTATKHQREVGAG 400 (418)
T ss_dssp HHHSCHHHHHHHHHHHHHHTEEEEEETTHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCCTTSHHHHTTHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEHHHHHCCC
T ss_conf 11467766543399999609629996138999999999999999986676277877658888874698556401330532
Q ss_pred -----------------C
Q ss_conf -----------------9
Q 000711 482 -----------------S 482 (1338)
Q Consensus 482 -----------------s 482 (1338)
-
T Consensus 401 y~D~~~~~~~~~~s~~a~ 418 (418)
T d1f61a_ 401 YFDRIATTVDPNSSTTAL 418 (418)
T ss_dssp HHHHHHHHHCTTSCCCCC
T ss_pred HHHHHHHHHCCCHHHHCC
T ss_conf 788889884787053139
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=100.00 E-value=0 Score=31552.57 Aligned_cols=1 Identities=100% Similarity=0.371 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~L~~G~Pd~~~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~ 80 (418)
T d2r5ea1 1 KFDLPKRYQGSTKSVWVEYIQLAAQYKPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYS 80 (418)
T ss_dssp CCCCCGGGTTCCCCHHHHHHHHHHHHCCEECSSSCCSSCCCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHCCCCCCHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 98643464179988999999986589988716889999889999999999983899667678998788999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~g~~~~p~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~ 160 (418)
T d2r5ea1 81 QLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLD 160 (418)
T ss_dssp HHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEESCCSSCEEGGGEECC
T ss_pred HHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 98599999641589917973321100222013333200122345004678987498699997214556663055666665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~ 240 (418)
T d2r5ea1 161 NNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIG 240 (418)
T ss_dssp HHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEE
T ss_pred HHHHHHHHHCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCHHHHCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 88776654114441241786865443331888777753442178122102102120157876531003655543145665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 S~SK~~~~pGlRiG~~~~~~~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~ 320 (418)
T d2r5ea1 241 SAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASF 320 (418)
T ss_dssp EHHHHTTCGGGCCEEEESCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 57754268876445323431133444211222333345620210122233222334453256788888988764667766
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 L~~~g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iRis~~~~ 400 (418)
T d2r5ea1 321 LAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKK 400 (418)
T ss_dssp HHHTTCEEEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEEEECCSC
T ss_pred HHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHCCCCCCHHHHHHHHHHHCCEEEECCHHHCCCCCCCCCCCEEEEEECCC
T ss_conf 76428701379812499787223565111012034467899999999878999968256478877667899899995699
Q ss_pred -----------------C
Q ss_conf -----------------9
Q 000711 482 -----------------S 482 (1338)
Q Consensus 482 -----------------s 482 (1338)
+
T Consensus 401 ~e~l~~a~~rl~~~lg~~ 418 (418)
T d2r5ea1 401 DENLQKAAEILRKWKGSS 418 (418)
T ss_dssp HHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHCCC
T ss_conf 999999999999987359
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=31549.12 Aligned_cols=1 Identities=0% Similarity=-0.260 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~r~~~~~~~~~~~~~~~~~~~dvI~l~~G~p~~~~p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~~ 80 (418)
T d1w7la_ 1 QLQARRLDGIDYNPWVEFVKLASEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGEL 80 (418)
T ss_dssp CCSCGGGTTCCCCTHHHHHHHHHTSCCEECCCCSCSSCCCHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 97670002799899999999747899788889889998899999999999857974468899867899999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~g~~~~~~~~I~it~G~~~al~~~~~~l~~~g~~vlv~~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~d 160 (418)
T d1w7la_ 81 LGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLD 160 (418)
T ss_dssp HTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECC---CCSEEGGGEECC
T ss_pred HCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 58998810115642585799999998622677615304556600689999749874014566542223443224575300
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~ 240 (418)
T d1w7la_ 161 PMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIG 240 (418)
T ss_dssp HHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEE
T ss_pred HHHHHCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCEEC
T ss_conf 55430223566531112676776564333889999999998629871155666775158989989777165445552001
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 S~SK~~~~pG~RvG~~v~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~ 320 (418)
T d1w7la_ 241 SAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRS 320 (418)
T ss_dssp EHHHHTTCGGGCCEEEECCHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 56764268877434322320255553023322322232025677887765222333344332223102333200012345
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 L~~~g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iRis~~~ 400 (418)
T d1w7la_ 321 LQSVGLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK 400 (418)
T ss_dssp HHTTTCEEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCC
T ss_pred HHHCCCCCCCCCCEEEEEEECCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCEEEECCHHHCCCCCCCCCCCEEEEEECC
T ss_conf 66438812379820499887710002320101345553589999999997999997454426787667779979999738
Q ss_pred -----------------C
Q ss_conf -----------------9
Q 000711 482 -----------------S 482 (1338)
Q Consensus 482 -----------------s 482 (1338)
-
T Consensus 401 ~~~~l~~a~~rl~~~~~~ 418 (418)
T d1w7la_ 401 DEATLQAMDEKLRKWKVE 418 (418)
T ss_dssp CHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHCC
T ss_conf 999999999999998667
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=31487.47 Aligned_cols=1 Identities=0% Similarity=-0.793 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 m~~lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~ 80 (417)
T d1pv7a_ 1 MYYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWII 80 (417)
T ss_dssp CHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 98665715899999999999999999999999999802999999999999999999999999999999817539999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (417)
T d1pv7a_ 81 TGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGI 160 (417)
T ss_dssp HHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 99999999988763014678889999877650122233202211222344113456777788765403554455300012
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (417)
T d1pv7a_ 161 MFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFD 240 (417)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 33456653211003489999999999842332102322002320233222211001222222110246688999887641
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (417)
T d1pv7a_ 241 QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKT 320 (417)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 22222222223333210000011222223322221024444200122210003657888886520113322111457899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l 400 (417)
T d1pv7a_ 321 LHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999998798489999999999999999999999999999997989999999999999999999753
Q ss_pred ----------------C
Q ss_conf ----------------9
Q 000711 482 ----------------S 482 (1338)
Q Consensus 482 ----------------s 482 (1338)
+
T Consensus 401 ~~~~~~~~~r~~~~e~a 417 (417)
T d1pv7a_ 401 SGPGPLSLLRRQVNEVA 417 (417)
T ss_dssp CCSSCTTHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHCCCC
T ss_conf 27785436675323379
|
| >d1w6ga1 b.30.2.1 (A:212-628) Copper amine oxidase, domain 3 {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Supersandwich superfamily: Amine oxidase catalytic domain family: Amine oxidase catalytic domain domain: Copper amine oxidase, domain 3 species: Arthrobacter globiformis [TaxId: 1665]
Probab=100.00 E-value=0 Score=31482.90 Aligned_cols=1 Identities=0% Similarity=-0.228 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 P~r~~~kp~~i~QP~G~~f~v~~g~~V~w~~W~f~~~f~~r~Gl~l~dv~~~~g~r~r~i~Y~lsl~E~~vpY~~~~p~~ 80 (417)
T d1w6ga1 1 PLRTTQKPISITQPEGPSFTVTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDRLRPIINRASIAEMVVPYGDPSPIR 80 (417)
T ss_dssp SCCCCCCCCCCCCTTCCSCEEETTTEEEETTEEEEEEEETTTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEBCCCCTTT
T ss_pred CCCCCCCCCEEECCCCCCEEECCCCEEEECCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEEECCEEEEEECCCCCCHH
T ss_conf 98888998305689999879778988997687899970787661999999818984766899801236798788998356
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~D~ge~G~G~~a~~L~~G~DCp~~a~y~D~~~~~~~g~p~~~~naiCifE~d~G~~~rh~~~~~~~~~~~r~~~L 160 (417)
T d1w6ga1 81 SWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWGILAKHSDLWSGINYTRRNRRM 160 (417)
T ss_dssp TTCEEECCCCCCGGGGBCCCCBTTTBCSSCEEECCEEECTTSCEEECTTCEEEEEEEEEEEEEEECTTTCCEEEEEEEEE
T ss_pred HHCEEEECCCCCHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCEEECCCEEEEEECCCCCEEEEEEECCCCEEEEEEEEE
T ss_conf 21016733452633412346558999866768237872688998861653788624788227888704781368750069
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 Vvr~i~TvgNYdYi~~~~F~~dGsIe~~v~aTG~l~~~~~~~~~~~~g~~v~~~~~g~~H~H~f~~RlD~dIdG~~Nsv~ 240 (417)
T d1w6ga1 161 VISFFTTIGNYDYGFYWYLYLDGTIEFEAKATGVVFTSAFPEGGSDNISQLAPGLGAPFHQHIFSARLDMAIDGFTNRVE 240 (417)
T ss_dssp EEEEEEEETTEEEEEEEEEETTSCEEEEEEEEECCCCEECCTTCCSSEEEEETTEEEECEEEEEEEEEEECTTSSCBEEE
T ss_pred EEEEEEEEEEEEEEEEEEEECCCEEEEEEEEEEEEEEECCCCCCCCCCCEECCCCCCCCCCCEEEEEECCCCCCCCCEEE
T ss_conf 99999973202089999994696799999988999871347888986437646756555321357774355479976699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~E~~a~~~~~~~~~r~~~vvN~~k~N~~G~~~gYkl~p~~~~~~l~~~~s~~~ 320 (417)
T d1w6ga1 241 EEDVVRQTMGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHNQPTLLADPGSSIA 320 (417)
T ss_dssp EEEEEECCSBTTBTTSCCEEEEEEEECBGGGCEECCCGGGTCEEEEEEEEEECTTSCEEEEEEEECCCCCCCSCTTSHHH
T ss_pred EEEEEEECCCCCCCCCCEEEEEEEEEEEHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHH
T ss_conf 99617842797665454789999988762563220266686489998799858899944599855887764579876011
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~ra~fa~~~lwVT~y~d~E~~aag~y~nq~~~~~~l~~~~~~~e~I~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~gf~L 400 (417)
T d1w6ga1 321 RRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDIDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKL 400 (417)
T ss_dssp HHTGGGGSSEEEEECCTTCCCTTCSCCBTCCSSSSHHHHHTTCCBCTTBCEEEEEEEEEEECCCGGGSSSEEEEEEEEEE
T ss_pred HCCHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCEEEEEEE
T ss_conf 02322106378856877662677777447789998467510899423786799995784248985447997620577999
Q ss_pred ----------------C
Q ss_conf ----------------9
Q 000711 482 ----------------S 482 (1338)
Q Consensus 482 ----------------s 482 (1338)
|
T Consensus 401 ~P~nFF~~nPald~p~s 417 (417)
T d1w6ga1 401 RPEGFFDRSPVLDVPAN 417 (417)
T ss_dssp EESSCSSSCTTTTCCCC
T ss_pred ECCCCCCCCCCCCCCCC
T ss_conf 87877899986678999
|
| >d3bona1 d.92.1.7 (A:3-419) Botulinum neurotoxin {Clostridium botulinum, serotype A [TaxId: 1491]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Clostridium neurotoxins, catalytic domain
domain: Botulinum neurotoxin
species: Clostridium botulinum, serotype A [TaxId: 1491]
Probab=100.00 E-value=0 Score=31480.69 Aligned_cols=1 Identities=0% Similarity=-2.653 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~nnnFNyndPVnn~~Ily~~~p~~~~~~~~KAF~I~~nIWIiPER~~~~~~~~~d~~~p~~~~~~~~~yYDpnyLsTD~ 80 (417)
T d3bona1 1 FVNKQFNYKDPVNGVDIAYIKIPNVGQMQPVKAFKIHNKIWVIPERDTFTNPEEGDLNPPPEAKQVPVSYYDSTYLSTDN 80 (417)
T ss_dssp CCSCCCCTTSCCCSSSEEEEECC--CCCCCEEEEEEETTEEEEEEECCSSCTTCCSCSCC----CCSSCCCCTTTTCSHH
T ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEECCEEECCCCCCCCCCCCCCCCCCHHHCCCCCCEECCCCCCCCH
T ss_conf 96677777898899718999567788776034477426768830343567888666689701025876412753245613
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 EKD~FLk~~IKLf~RINsn~~G~~LL~~I~~aiPflG~s~~~~~~~~~~~~svni~~~~g~~~~~~~NlvIfGPgpnI~e 160 (417)
T d3bona1 81 EKDNYLKGVTKLFERIYSTDLGRMLLTSIVRGIPFWGGSTIDTELKVIDTNCINVIQPDGSYRSEELNLVIIGPSADIIQ 160 (417)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHCCCCCBCCSSTTEEBCCGGGEEEEECTTSCEEEEECSEEEEECCSSTTC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCEEEECCCCCCCC
T ss_conf 78899999999999854857899999999726877789988711256641157764489854554215899889863145
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 n~~~~~~~~~~n~s~~GfGsi~~i~FsPe~~~~f~~~~~~~~~~~~~~~~F~~DPAl~L~heLIhsLh~LYGik~~~~~~ 240 (417)
T d3bona1 161 FECKSFGHEVLNLTRNGYGSTQYIRFSPDFTFGFEESLEVDTNPLLGAGKFATDPAVTLAHELIHAGHRLYGIAINPNRV 240 (417)
T ss_dssp CEEECCCCSSCCTTTSSCCCCEEEECCTTEEEEECSSHHHHTCTTSCCCCEECCHHHHHHHHHHHHHHHHTTCCCCTTCE
T ss_pred CCCEEECCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCCCCCCCE
T ss_conf 54323034457733047650589997764377604533455555545343542889999999999988760756788741
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~i~~eEl~tFGG~D~~iI~~~~~~~~~~k~l~~yk~Ia~rl~kvn~~~~~~~~l~~yK~~F~~KY~ 320 (417)
T d3bona1 241 FKVNTNAYYEMSGLEVSFEELRTFGGHDAKFIDSLQENEFRLYYYNKFKDIASTLNKAKSIVGTTASLQYMKNVFKEKYL 320 (417)
T ss_dssp EECCSCHHHHHTTCEEEHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHCCEESSSSSCHHHHHHHHHHHHT
T ss_pred EECCCCCHHHHCCCCCCHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 32121122343246645777765169781105846788899999999999999987525678885236999999988744
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 l~~d~~g~~~vn~~kF~~~yk~L~~~fTe~~~a~~fkvk~Rk~Y~~~~~~~~~~nlldd~iYtI~eGFNi~~~nl~~~~~ 400 (417)
T d3bona1 321 LSEDTSGKFSVDKLKFDKLYKMLTEIYTEDNFVKFFKVLNRKTYLNFDKAVFKINIVPKVNYTIYDGFNLRNTNLAANFN 400 (417)
T ss_dssp CEECTTCCEECCHHHHHHHHHHHHHTSCHHHHHHHHTCCCCSCSSSCCCEEEECCCSSTTTCBTTTBTSCTTSTTSSTTG
T ss_pred CCCCCCCCEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEECCCCCCEECCCCCCCCEECCCCCCCCCCCCCCCCC
T ss_conf 65278885895389999999999711588888766501434420000244100144676531314552146665345557
Q ss_pred ----------------C
Q ss_conf ----------------9
Q 000711 482 ----------------S 482 (1338)
Q Consensus 482 ----------------s 482 (1338)
-
T Consensus 401 GQN~~iN~~~~~~~~~~ 417 (417)
T d3bona1 401 GQNTEINNMNFTKLKNF 417 (417)
T ss_dssp GGBTTTTGGGCEEEEEC
T ss_pred CCCHHHCHHHHHHHCCC
T ss_conf 76522153442442069
|
| >d1q7ea_ c.123.1.1 (A:) Hypothetical protein YfdW {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-transferase family III (CaiB/BaiF) superfamily: CoA-transferase family III (CaiB/BaiF) family: CoA-transferase family III (CaiB/BaiF) domain: Hypothetical protein YfdW species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=31480.01 Aligned_cols=1 Identities=0% Similarity=-1.390 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 m~~PL~GirVld~~~~~agp~~~~~Lad~GAeVIkvE~p~~gd~~R~~~~~~~~~~s~~~~~~nr~K~si~lDL~~~~g~ 80 (417)
T d1q7ea_ 1 LSTPLQGIKVLDFTGVQSGPSCTQMLAWFGADVIKIERPGVGDVTRHQLRDIPDIDALYFTMLNSNKRSIELNTKTAEGK 80 (417)
T ss_dssp CCCTTTTCEEEECCCTTHHHHHHHHHHHTTCEEEEEECTTTCCGGGTTTCSSTTSCCHHHHTTCTTCEEEECCTTSHHHH
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHCCCCCCCCCCCHHHHHHCCCCEEEEEECCCHHHH
T ss_conf 99898999899847704899999999983993999898999871210488898985188897089984999769398899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~Li~~aDv~i~n~~pg~~~rlGl~~~~l~~~nP~lI~~sisgfG~~GP~~~~~~~D~~~qA~sG~~~~~g~~~~~P 160 (417)
T d1q7ea_ 81 EVMEKLIREADILVENFHPGAIDHMGFTWEHIQEINPRLIFGSIKGFDECSPYVNVKAYENVAQAAGGAASTTGFWDGPP 160 (417)
T ss_dssp HHHHHHHHHCSEEEECCCC-------CCHHHHHHHCTTCEEEEEESSCTTSTTTTSCCCHHHHHHHTTHHHHSSCTTSCC
T ss_pred HHHHHHHHCCCCCEECCCCCCHHHCCCCHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999984086407546887175528889999866878788763222454344565334543333223201126656798
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~D~~~g~~aa~ailaAL~~R~~tG~Gq~VdvSl~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 240 (417)
T d1q7ea_ 161 LVSAAALGDSNTGMHLLIGLLAALLHREKTGRGQRVTMSMQDAVLNLCRVKLRDQQRLDKLGYLEEYPQYPNGTFGDAVP 240 (417)
T ss_dssp CCCSSCTTTHHHHHHHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHTHHHHHHHHHHHHHSCCTTSTTTTTSCCCSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 52224431679999999999999999985499739997789999986689998554320002222244344655677788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 r~~~~~~~~~p~~~~~~~~~~t~dg~i~~~~~~~~~w~~l~~~lg~~dl~~d~~~~~~~~r~~~~~~l~~~i~~~~~~~t 320 (417)
T d1q7ea_ 241 RGGNAGGGGQPGWILKCKGWETDPNAYIYFTIQEQNWENTCKAIGKPEWITDPAYSTAHARQPHIFDIFAEIEKYTVTID 320 (417)
T ss_dssp CCTTCCSSSSCEEEEECTTTTTCTTCEEEEECCGGGHHHHHHHTTCGGGGTCTTTSSHHHHGGGHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 66656888886430133015517983999732312556899985885101332000000122119999877765211333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~e~~~~l~~~~ip~~pV~~~~e~~~dpq~~~r~~~~~~~~p~~g~~~~~g~p~~~s~~~~~~~~aP~lGeht~eIL~el 400 (417)
T d1q7ea_ 321 KHEAVAYLTQFDIPCAPVLSMKEISLDPSLRQSGSVVEVEQPLRGKYLTVGCPMKFSAFTPDIKAAPLLGEHTAAVLQEL 400 (417)
T ss_dssp HHHHHHHHGGGTCCEEECCCHHHHHHCHHHHHTTSEEEEEETTTEEEEEECCSSCCSSCCCCCCCCCCTTTTHHHHHHHT
T ss_pred CCHHEEEEECCCEEEEECCCHHHHHHCHHHHHCCCEEEEECCCCCCEEEECCCEECCCCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 10110123237702674488999976989897299999666998823644788604899999999999984599999986
Q ss_pred ----------------C
Q ss_conf ----------------9
Q 000711 482 ----------------S 482 (1338)
Q Consensus 482 ----------------s 482 (1338)
-
T Consensus 401 G~s~~~I~~L~~~gvI~ 417 (417)
T d1q7ea_ 401 GYSDDEIAAMKQNHAIE 417 (417)
T ss_dssp TCCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHCCCCC
T ss_conf 99999999999781939
|
| >d1gff1_ b.121.5.1 (1:) Microvirus capsid proteins {Bacteriophage G4 [TaxId: 10843]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) superfamily: ssDNA viruses family: Microviridae-like VP domain: Microvirus capsid proteins species: Bacteriophage G4 [TaxId: 10843]
Probab=100.00 E-value=0 Score=31479.44 Aligned_cols=1 Identities=100% Similarity=-0.360 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~DlsH~~~~t~~~G~L~PI~~~eVLPGDtf~l~~~~f~Rlat~~~pvmdn~~~d~ffFfVP~RlvW~dnWekF~g~~~ 80 (417)
T d1gff1_ 1 VPHDLSHLVFEAGKIGRLKTISWTPVVAGDSFECDMVGAIRLSPLRRGLAVDSRVDIFSFYIPHRHIYGQQWINFMKDGV 80 (417)
T ss_dssp CEECCCEEEEEEECSSBCEEEEEEEECTTCEEEEEEEEEEEECCBSSSCCSCEEEEEEEEEEESHHHHTHHHHHHHHHGG
T ss_pred CCCCCCCHHHHCCCCCEEEEEEECCCCCCCEEEECHHHHHCCCCCCCHHHHHEEEEEEEEECCEEEEEHHHHHHHHCCCC
T ss_conf 98554500110455650678775142589755644123201266532211210667899852411354125899756878
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 np~~vP~vt~~~g~~~~dYlG~P~~~~~~~~~l~~rAYn~I~NewfRd~nl~ds~~v~~~dgpdd~a~y~lr~~~~~dyf 160 (417)
T d1gff1_ 81 NASPLPPVTCSSGWDSAAYLGTIPSSTLKVPKFLHQGYLNIYNNYFKPPWSDDLTYANPSNMPSEDYKWGVRVANLKSIW 160 (417)
T ss_dssp GCCCCCCEECCSSTTSSGGGSSCCCTTSEECHHHHHHHHHHHHHHTSCTTSCCCCCSSGGGSCTTTTTTCCBCBCCCCST
T ss_pred CCCCCCCEECCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHCCCCCCC
T ss_conf 98878706458874387618888888732102478999999997713734355335147778875102222201101310
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 Ts~LP~~~~~s~~~g~~~~s~d~~gL~~a~a~ti~~lr~a~flQr~~Ei~argG~r~~~~v~~~d~rlqr~eylggg~~~ 240 (417)
T d1gff1_ 161 TAPLPPDTRTSENMTTGTSTIDIMGLQAAYAKLHTEQERDYFMTRYRDIMKEFGGHTSYDGDNRPLLLMRSEFWASGYDV 240 (417)
T ss_dssp TSCCCTTCCSCCCCCCCSSCCCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHTTTCCCCTTTTTCCEEEEEEEEEECCEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHCCCCCC
T ss_conf 13589998877556888664470435666667899999999999999999734983554576827765214765366422
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~Tdqt~lg~~sg~g~~~~~~~v~~~~~~EHG~I~~L~~vr~~~t~~q~~~~~~~~~d~~~p~fa~Dp~l~geqP~~n~e 320 (417)
T d1gff1_ 241 DGTDQSSLGQFSGRVQQTFNHKVPRFYVPEHGVIMTLAVTRFPPTHEMEMHYLVGKENLTYTDIACDPALMANLPPREVS 320 (417)
T ss_dssp ECCSTTTTTCEEEECEEEEEEEEEEEECCSSEEEEEEEEEECCCCBTTBCCHHHHSSSCCHHHHSCCHHHHTTSCCEEEE
T ss_pred CCCCCCCHHHHCCCEEEECCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHCCCCCCCCHHHCCCHHHHCCCCCCCCC
T ss_conf 46653112331032487215633553245541899999853786101045541562001452330680110347742323
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 i~~~~~s~d~~v~Gy~~r~~~YR~~p~~V~g~f~sLd~W~~~~~~psl~~~~~v~v~~~~~D~~f~s~~~~q~~~~~~fn 400 (417)
T d1gff1_ 321 LKEFFHSSPDSAKFKIAEGQWYRTQPDRVAFPYNALDGFPFYSALPSTDLKDRVLVNTNNYDEIFQSMQLAHWNMQTKFN 400 (417)
T ss_dssp TTTTBSSCCTTCEEEECTTGGGSCCCCCCCTTTTTCTTCCSBCSCCCSSTGGGTBCCGGGGGGGBSSCSSCSEEEEEEEE
T ss_pred HHHHCCCCCCCEEECCHHHHHHHCCCHHCCCCCCCCCCCEEECCCCCCCHHHCEEECCCCCCHHHHCCCHHHHHEEEEEE
T ss_conf 54404778864014012045552472010200004564132114889984460152687503666137505500114775
Q ss_pred ----------------C
Q ss_conf ----------------9
Q 000711 482 ----------------S 482 (1338)
Q Consensus 482 ----------------s 482 (1338)
|
T Consensus 401 ~~v~R~mPt~~~~i~~~ 417 (417)
T d1gff1_ 401 INVYRHMPTTRDSIMTS 417 (417)
T ss_dssp EEEECCCCCHHHHSCCC
T ss_pred EEEEECCCCCCCCCCCC
T ss_conf 67860489854332469
|
| >d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: Clavaminate synthase-like family: YbiU-like domain: Hypothetical protein YbiU species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=31478.81 Aligned_cols=1 Identities=0% Similarity=-0.958 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~p~dl~~~i~~~K~~Lr~~~~~~~~~f~~l~~~i~~ev~eI~~l~~~G~~iIPeI~F~dI~~~~~~~~~~~~I 80 (417)
T d2csga1 1 TPFTHETLPADPKAAIRQMKQALRAQIGDVQAVFDRLSATIAARVAEINDLKAQGQPVWPIIPFSELAMGNISDATRAEV 80 (417)
T ss_dssp CTTCCSSCCSCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSCBCCHHHHHTTCCCHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCCCCCHHHHHHH
T ss_conf 99876678898389999999999965678999999999999999999999996199985065589952678998999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 krrG~vVIRnV~p~e~a~~w~~~l~~Yle~n~~~~~~~~~~d~~f~~lp~~~pqiy~lyws~~q~~aR~~p~~~~~~~~l 160 (417)
T d2csga1 81 KRRGCAVIKGHFPREQALAWDQSMLDYLDKNHFDEVYKGPGDNFFGTLSASRPEIYPVYWSQAQMQARQSEEMALAQSFL 160 (417)
T ss_dssp HHHSEEEETTSSCHHHHHHHHHHHHHHHHHTTHHHHCCCCCCCTTTTSSSCCCSSCCCCCBHHHHHHHHCHHHHHHHHHH
T ss_pred HHCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHCCHHHHHHHHHH
T ss_conf 86188998887899999999999999998286420036864310012355677744242689999874495899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~lw~~~~~~~~~~~~~~~l~y~DR~r~r~Pg~~~~~l~pH~D~Gs~erW~d~~y~~~y~~if~g~we~ydPw~~~~R~~ 240 (417)
T d2csga1 161 NRLWQVEHDGKRWFNPDISIIYPDRIRRRPPGTTSKGLGAHTDSGALERWLLPAYQQVFASVFNGNVEQYDPWNAAHRTD 240 (417)
T ss_dssp HTTSBCCSSSSCSSEEEEECCCCCCEECCCTTCCBCCEEEEECSCSTHHHHCHHHHHHTHHHHTSCGGGCCTTBCTTGGG
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 85202368866412577743045503137999876786755689850103563125688887558842279876423320
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~l~~~~~~cs~FR~fQGwlaLs~~~p~dGtL~v~P~~~~~ay~llrpf~~d~~~~~~~g~~pg~~~~~~~~~h~~l~ 320 (417)
T d2csga1 241 VEEYTVDNTTKCSVFRTFQGWTALSDMLPGQGLLHVVPIPEAMAYILLRPLLDDVPEDELCGVAPGRVLPISEQWHPLLM 320 (417)
T ss_dssp CCCCCCTTCCCCCSCCSEEEEEESSCBCTTSSCEEECCCGGGHHHHHHGGGSTTSCTTCCTTCCTTSCEECCTTTCHHHH
T ss_pred CHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 00034478765414778887752366788887379963403577887240125556655677776655545633315650
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~v~ip~~~pGD~V~Wh~d~iH~v~~~~~g~~~s~V~Yi~~~P~~~~N~~yl~~qr~aF~~g~~ppdFp~~~~E~~~~g 400 (417)
T d2csga1 321 AALTSIPPLEAGDSVWWHCDVIHSVAPVENQQGWGNVMYIPAAPMCEKNLAYARKVKAALETGASPGDFPREDYETTWEG 400 (417)
T ss_dssp TTCEECCCBCTTCEEEEETTCCEEECCBSSCSSCCCEEECCBCEESHHHHHHHHHHHHHHHHTCCCTTSCSCCGGGSCSS
T ss_pred CCEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 86155245688887887078753446678999865389842788846559999999999975999877789987543356
Q ss_pred ----------------C
Q ss_conf ----------------9
Q 000711 482 ----------------S 482 (1338)
Q Consensus 482 ----------------s 482 (1338)
=
T Consensus 401 r~~~~~ls~~G~r~mGL 417 (417)
T d2csga1 401 RFTLRDLNIHGKRALGI 417 (417)
T ss_dssp BCCGGGCCHHHHHHTTC
T ss_pred CCCHHHCCHHHHHHCCC
T ss_conf 88946528999986289
|
| >d1ltka_ c.86.1.1 (A:) Phosphoglycerate kinase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=100.00 E-value=0 Score=31478.80 Aligned_cols=1 Identities=0% Similarity=-0.161 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~n~~ti~d~~d~~gK~VllRvD~NvPi~~g~i~dd~RI~~~~pTI~~l~~~~a~kvil~sH~GRP~g~~~~~~SL~ 80 (417)
T d1ltka_ 1 HHHLGNKLSISDLKDIKNKKVLVRVDFNVPIENGIIKDTNRITATLPTINHLKKEGASKIILISHCGRPDGLRNEKYTLK 80 (417)
T ss_dssp CCCSSSCCBSSSCCCCTTCEEEEEECCCCCEETTEESCTHHHHHTHHHHHHHHTTCCSEEEEECCCSCCTTSCCGGGCSH
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHH
T ss_conf 97444675023111258998999943477654993896889999999999999879985999847999999889875879
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~a~~L~~~l~~~V~f~~d~~g~~~~~~i~~l~~g~IlLLENvRF~~eE~~~~~~~~~~~~~~~~~n~~~f~k~LA~laD 160 (417)
T d1ltka_ 81 PVAETLKGLLGEEVLFLNDCVGKEVEDKINAAKENSVILLENLRFHIEEEGKGVDANGNKVKANKEDVEKFQNDLTKLAD 160 (417)
T ss_dssp HHHHHHHHHHTSCCEECSCSSSHHHHHHHHSSCTTEEEECCCGGGSHHHHSEEECTTCCEEECCHHHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCEECCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHCCC
T ss_conf 99999999868465556553202245430247865378740021021012356432221000122307999999860385
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 vyVNDAF~~aHR~haS~vgi~~~~~~aG~L~ekEl~~L~~~l~~~~kP~vaIlGGaKvsdKi~vi~~L~~k~D~iiigG~ 240 (417)
T d1ltka_ 161 VFINDAFGTAHRAHSSMVGVKLNVKASGFLMKKELEYFSKALENPQRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGGG 240 (417)
T ss_dssp EEEEECTTSCSSCCHHHHCCCCSEEEECHHHHHHHHHHHHHHTSCCSSEEEEEECSCSGGGHHHHHHHHTTCSEEEEESS
T ss_pred EEEECCHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCEEEEEHH
T ss_conf 89963531231047632312120112368999999999999854566736998567744269999878865111663036
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 mantfL~~a~g~~ig~sl~e~~~~~~~~~i~~~a~~~~~~i~lP~D~~v~~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~ 320 (417)
T d1ltka_ 241 MAYTFKKVLNNMKIGTSLFDEAGSKIVGEIMEKAKAKNVQIFLPVDFKIADNFDNNANTKFVTDEEGIPDNWMGLDAGPK 320 (417)
T ss_dssp HHHHHHHHHHCCCCTTSCCCTTGGGTHHHHHHHHHHTTCEEECCSEEEEESSSSSSSCEEEEETTTCCCTTCEEEEECHH
T ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCH
T ss_conf 67889886148766753103567899999999998639961002322430234567643312333567753444411511
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 Ti~~~~~~I~~aktI~WNGP~GvfE~~~F~~GT~~l~~~i~~~t~~~~~sivGGGdT~aai~~~g~~~~~~hvSTGGGA~ 400 (417)
T d1ltka_ 321 SIENYKDVILTSKTVIWNGPQGVFEMPNFAKGSIECLNLVVEVTKKGAITIVGGGDTASLVEQQNKKNEISHVSTGGGAS 400 (417)
T ss_dssp HHHHHHHHHHTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHTTCEEEECCSTTHHHHHHHTCGGGSSEECCCSHHH
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCEEEECCHHHH
T ss_conf 12679998646877999898344446624278999999999883179979995789999999639746880897578999
Q ss_pred ----------------C
Q ss_conf ----------------9
Q 000711 482 ----------------S 482 (1338)
Q Consensus 482 ----------------s 482 (1338)
.
T Consensus 401 Le~L~G~~LPgieaL~~ 417 (417)
T d1ltka_ 401 LELLEGKELPGVLALSN 417 (417)
T ss_dssp HHHHTTCCCHHHHTSCC
T ss_pred HHHHCCCCCCCEECCCC
T ss_conf 99987999762001249
|
| >d1vema2 c.1.8.1 (A:1-417) Bacterial beta-amylase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial beta-amylase species: Bacillus cereus [TaxId: 1396]
Probab=100.00 E-value=0 Score=31474.05 Aligned_cols=1 Identities=0% Similarity=-0.161 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~v~VmlPLd~v~~~~~~~~~~~~L~~LK~aGV~gV~vdVwWGivE~~~Pg~Ydws~yd~l~~mv~~~GL 80 (417)
T d1vema2 1 AVNGKGMNPDYKAYLMAPLKKIPEVTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDFSYAQRFAQSVKNAGM 80 (417)
T ss_dssp CGGGCCCCTTCEEEEECCSSCGGGTSCHHHHHHHHHHHHHTTEEEEEEEEEHHHHTCSSTTCCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 98887788995389986622245667889999999999983997899933424310589983570899999999998698
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 Ki~vvmsfH~cGgnvgd~~ti~lP~Wv~e~~~~pDi~~tDr~G~r~~E~LS~~~d~t~~~~y~~~~~sF~~~f~~~~~~I 160 (417)
T d1vema2 81 KMIPIISTHQCGGNVGDDCNVPIPSWVWNQKSDDSLYFKSETGTVNKETLNPLASDVIRKEYGELYTAFAAAMKPYKDVI 160 (417)
T ss_dssp EEEEEEECSCBSSSTTCCCCBCCCGGGGGGCSSSCSSEECTTCCEECSSCCTTCHHHHHHHHHHHHHHHHHHTGGGGGGB
T ss_pred EEEEEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 28999874235787788615688888870554888167768898883703766698701004167887999987740047
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~ei~vglGp~GELRYPsyp~~~gW~~pg~GefqCYd~~~~~~fr~wl~~ky~al~aln~aWG~~~~~~~~~~~p~~~~ff 240 (417)
T d1vema2 161 AKIYLSGGPAGELRYPSYTTSDGTGYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTKLISELAILPPSDGEQF 240 (417)
T ss_dssp CCEEECCSGGGBSSCCCCCTTTTCCTTSCCCCCCCSHHHHHHHHHHHHHHHSSHHHHHHHHTCCCSSGGGCCSCSCHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 99986057420003788810015657998866578999999999999860665632235228999754576778888766
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~g~~s~YG~fFL~WYs~~L~~Hgdrvl~~A~~~F~~~~~v~l~~Kv~giHWwy~~~t~shaaElTAGydgY~~i~~~~ 320 (417)
T d1vema2 241 LMNGYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQYNNPTIPHGAEKPAGYNDYSHLLDAF 320 (417)
T ss_dssp HHTGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEEECCCCTTTTCSSSTTTTHHHHTCSCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHH
T ss_conf 67983533335589999999999999999999985189877279999465033689999874154405855779999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~r~~~~l~ftc~em~d~~~~~~~s~Pe~Lv~qv~~aa~~~gv~~~gENAl~~~d~~~~~~i~~~~~~~~~~~fTylRm~~ 400 (417)
T d1vema2 321 KSAKLDVTFTCLEMTDKGSYPEYSMPKTLVQNIATLANEKGIVLNGENALSIGNEEEYKRVAEMAFNYNFAGFTLLRYQD 400 (417)
T ss_dssp HHHTCEEEESCCSCCCCCCTTTCCCHHHHHHHHHHHHHHHTCCEEEECSSCCCSHHHHHHHHHHHHHTTCSEEEESCHHH
T ss_pred HHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCH
T ss_conf 86697598761244568899655797999999999999829936510053014867999999971127876157975656
Q ss_pred ----------------C
Q ss_conf ----------------9
Q 000711 482 ----------------S 482 (1338)
Q Consensus 482 ----------------s 482 (1338)
.
T Consensus 401 ~l~~~~n~~~F~~fv~~ 417 (417)
T d1vema2 401 VMYNNSLMGKFKDLLGV 417 (417)
T ss_dssp HHTCHHHHHHHHHHTSC
T ss_pred HHCCCCCHHHHHHHHCC
T ss_conf 55796428889887439
|
| >d1q2oa_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Nitric oxide (NO) synthase oxygenase domain superfamily: Nitric oxide (NO) synthase oxygenase domain family: Nitric oxide (NO) synthase oxygenase domain domain: Nitric oxide (NO) synthase oxygenase domain species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=0 Score=31409.60 Aligned_cols=1 Identities=100% Similarity=1.100 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
|
T Consensus 1 ~p~~~~~kn~~~~~~~~dtlh~~~~~~~~C~~~~C~gs~m~~~~~~~~p~~~~~~~e~ll~eA~~Fi~q~y~e~~~~~~~ 80 (416)
T d1q2oa_ 1 GPKFPRVKNWELGSITYDTLCAQSQQDGPCTPRRCLGSLVLPRKLQTRPSPGPPPAEQLLSQARDFINQYYSSIKRSGSQ 80 (416)
T ss_dssp CCSSCEEEBTTTCCEEECCGGGGCCBCCSCCSSCBCTTCSCC-----------CCHHHHHHHHHHHHHHHHHHTTCTTSH
T ss_pred CCCCEEEEECCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 99745655404687563324442678899876733560025644466888999998999999999999999862756778
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~R~~ev~~eI~~tGtY~~T~eEL~~GAk~AWRNs~RCIGR~~W~~L~V~D~R~v~t~~~mfeal~~Hi~~ATN~G~I 160 (416)
T d1q2oa_ 81 AHEERLQEVEAEVASTGTYHLRESELVFGAKQAWRNAPRCVGRIQWGKLQVFDARDCSSAQEMFTYICNHIKYATNRGNL 160 (416)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHCTTCTTGGGTTCCEEEECTTCCSHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999999997464620899999887899870455222300216572665678999899999999999997079987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 r~~ITVFp~~~~g~~~~RIwN~QLIrYAGY~~~dGsiiGDPa~vefT~~c~~lGW~~~~t~FDvLPLViq~~g~~p~~fe 240 (416)
T d1q2oa_ 161 RSAITVFPQRAPGRGDFRIWNSQLVRYAGYRQQDGSVRGDPANVEITELCIQHGWTPGNGRFDVLPLLLQAPDEAPELFV 240 (416)
T ss_dssp CCEEEECCCCBTTBCCCEECSSBSSCBCEEECTTSCEEECGGGHHHHHHHHHTTCCCCCSSSCBCCEEEECTTSCCEEEC
T ss_pred CEEEEECCCCCCCCCCCEEECHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCEEEE
T ss_conf 63389737988999986675488786626578998764684216999999976888999987710289997899972673
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 iP~elvlEV~i~HP~~~wf~~LgLkWyavPaiSnM~L~iGGi~y~aaPFNGWYM~TEIgaRnl~D~~RYN~L~~VA~~mG 320 (416)
T d1q2oa_ 241 LPPELVLEVPLEHPTLEWFAALGLRWYALPAVSNMLLEIGGLEFSAAPFSGWYMSTEIGTRDLCDPHRYNILEDVAVCMD 320 (416)
T ss_dssp CCGGGSCEEECCCSSCGGGGGGCCEEESCCEECSCEEEETTEEESCCCEECCCBHHHHHTHHHHCTTTTCCHHHHHHHTT
T ss_pred CCHHHEEEECCCCCCCCHHHHCCCCEEECCHHCCCEEEECCEEECCCCCCCCEEHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 88778357346798983066638857605211255000077844245645330022355430455566666899999848
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 LDT~~~~sLWkDrAlvElN~AVLhSF~~~gVtIvDHHtas~~F~~~~~~E~~~~r~~pgdW~WlvPP~S~s~TpvfH~~~ 400 (416)
T d1q2oa_ 321 LDTRTTSSLWKDKAAVEINLAVLHSFQLAKVTIVDHHAATVSFMKHLDNEQKARGGCPADWAWIVPPISGSLTPVFHQEM 400 (416)
T ss_dssp CCTTCGGGCHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHSCCBCCHHHHSCSSSGGGSGGGGBCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCHHHHHHH
T ss_conf 78889740467789999999999899877964704068899999999999983899998852777888754541676665
Q ss_pred ---------------C
Q ss_conf ---------------9
Q 000711 482 ---------------S 482 (1338)
Q Consensus 482 ---------------s 482 (1338)
=
T Consensus 401 ~n~~l~P~f~yq~~~w 416 (416)
T d1q2oa_ 401 VNYILSPAFRYQPDPW 416 (416)
T ss_dssp BBCBCSSEEECCCCCC
T ss_pred HHCCCCCCCCCCCCCC
T ss_conf 5034588865589999
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=31408.60 Aligned_cols=1 Identities=0% Similarity=-1.091 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 l~~~~~l~~~D~ei~~~i~~e~~rq~~~i~LiaSEN~~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~r 80 (416)
T d1dfoa_ 1 LKREMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDR 80 (416)
T ss_dssp CCTTCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHCCHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 98658845519999999999999987690586476657899999855741475658899975447773099999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 a~~lF~a~~anVqp~SGs~AN~av~~All~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~IDyd~l~~~ 160 (416)
T d1dfoa_ 81 AKELFGADYANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQ 160 (416)
T ss_dssp HHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCSSSSBCHHHHHHH
T ss_pred HHHHHCCCCCEEECCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHH
T ss_conf 99983998205601557557999999863898866421465433335555544467237999646687667447899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 a~~~kPklIi~G~S~y~r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~aDvvt~tThKtlrGPrggiI~~ 240 (416)
T d1dfoa_ 161 AKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILA 240 (416)
T ss_dssp HHHHCCSEEEEECSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTTSSEEEEESSSTTCCCSCEEEEE
T ss_pred HHHHCCCEEEECCCCCCCCCCHHHHHHHHHHCCCEEECCHHHHHCCEECCCCCCCCCCCCEEEEEHHHCCCCCCCEEEEE
T ss_conf 99836564873432255655879999998751715872212000003244347860000046521001046878638984
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~G~~iv~ggTdnHlvlv 320 (416)
T d1dfoa_ 241 KGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLV 320 (416)
T ss_dssp SSCCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE
T ss_conf 23117689998766086534685177898988779987097889999999999999999998389443369988753688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 dl~~~~~~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l~~~~~~~~~~~ 400 (416)
T d1dfoa_ 321 DLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDSINDEAVIER 400 (416)
T ss_dssp ECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCEEECCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 73045898999999999729688678588999988889821767789984899879999999999999972786799999
Q ss_pred ---------------C
Q ss_conf ---------------9
Q 000711 482 ---------------S 482 (1338)
Q Consensus 482 ---------------s 482 (1338)
|
T Consensus 401 ir~~V~~l~~~fPly~ 416 (416)
T d1dfoa_ 401 IKGKVLDICARYPVYA 416 (416)
T ss_dssp HHHHHHHHHHHSCSBC
T ss_pred HHHHHHHHHHCCCCCC
T ss_conf 9999999998089989
|
| >d1d8wa_ c.1.15.2 (A:) L-rhamnose isomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: L-rhamnose isomerase domain: L-rhamnose isomerase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=31404.71 Aligned_cols=1 Identities=0% Similarity=-0.427 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 s~i~~~ye~a~e~ya~~GID~e~al~~L~~~~Is~h~WqGddv~gFe~~~g~ltGGi~~tGnyPG~aR~~~E~~~D~~~~ 80 (416)
T d1d8wa_ 1 TQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATGNYPGKARNASELRADLEQA 80 (416)
T ss_dssp CHHHHHHHHHHHHHHHTTCCHHHHHHHHTTCCEEEEGGGGTTTCCCCC--------------CSCCCCSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 91679999999999983988999999985484443036678765534677767776021278899889989999889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~Lipg~~~vnLH~~y~~~~~~vdrd~i~p~hf~~w~~wAk~~glglDfNpt~Fshp~~~~g~sLshpd~~iR~~wI~H~ 160 (416)
T d1d8wa_ 81 MRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVEWAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHC 160 (416)
T ss_dssp HHTSCSCEEEEEEGGGCCCSSCCCGGGCCGGGGHHHHHHHHHTTCEEEEECCCSSSGGGTTSCSTTCSSHHHHHHHHHHH
T ss_pred HHHCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 98568998400033320258866412258574899999999749774757655578442257762588889999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~c~~I~~~~G~~~g~~~v~niWi~DG~k~~~~d~~~~R~Rl~eSLdeI~a~~~d~~~~ld~vE~K~Fg~g~esy~vgs~ 240 (416)
T d1d8wa_ 161 KASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSN 240 (416)
T ss_dssp HHHHHHHHHHHHHHTSCEEEEECCCCEESSCCSCSHHHHHHHHHHHHHHTCSCCCTTTEEEEEECCSCBTTBCSEESSCH
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHEECCCCCCEEEECCCH
T ss_conf 99999999986300776204776577676888683159999999999998715876650454230125565035763738
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 df~~~yal~~~a~~llD~GH~hPtenI~dkisalll~~~~~~lH~sr~~rwDsDhvvi~~del~~I~~ElVr~~~ld~v~ 320 (416)
T d1d8wa_ 241 EFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHDLFDRVH 320 (416)
T ss_dssp HHHHHHHHHHTCEEEEETTSSCTTCCHHHHHHHHTTTSSCEEEEECBCSSSSCCBCCCSSHHHHHHHHHHHHTTGGGTEE
T ss_pred HHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCE
T ss_conf 88998763489679986798787665999999999727542576388856677612036489999999999645544422
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~LD~fdasinrI~a~v~g~rn~qka~l~ALL~p~~~L~~~q~~gD~t~rla~~Ee~K~~P~~avW~~~c~r~~vp~~~~ 400 (416)
T d1d8wa_ 321 IGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELRKLEAPGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSE 400 (416)
T ss_dssp EEECCCCCSSCHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHTTTCHHHHHHHHHHHTTSCHHHHHHHHHHHTTCCCSTT
T ss_pred ECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHH
T ss_conf 30023422466199999999999999999976899999999986799999999999851981889999999739998768
Q ss_pred ---------------C
Q ss_conf ---------------9
Q 000711 482 ---------------S 482 (1338)
Q Consensus 482 ---------------s 482 (1338)
-
T Consensus 401 ~~~~v~~Ye~~v~~kR 416 (416)
T d1d8wa_ 401 WLESVRAYEKEILSRR 416 (416)
T ss_dssp HHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 8999999999885349
|
| >d2vnud4 b.40.4.16 (D:495-910) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: RNB domain-like domain: Exosome complex exonuclease RRP44 species: Saccharomyces cerevisiae [TaxId: 4932]
Probab=100.00 E-value=0 Score=31400.34 Aligned_cols=1 Identities=0% Similarity=-1.424 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~Dl~~l~~~tID~~~a~d~DDAisi~~~~~g~~~l~VHIADva 80 (416)
T d2vnud4 1 FSKKVLECLPAEGHDWKAPTKLDDPEAVSKDPLLTKRKDLRDKLICSIDPPGCVDINDALHAKKLPNGNWEVGVHIADVT 80 (416)
T ss_dssp CCHHHHTTSCTTGGGCCCCSSTTCHHHHHHCGGGGGSEECTTSCCEEEESSSCCCCCEEEEEEECTTSCEEEEEEEECHH
T ss_pred CCHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCHH
T ss_conf 98789964432368643764453122115752323771177898799769999546565899995899599999983578
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~v~~~s~Ld~~A~~R~~t~Ylp~~~~pMLP~~ls~~~~SL~~~~~r~a~s~~~~~~~~g~i~~~~~~~s~I~~~~~ltY 160 (416)
T d2vnud4 81 HFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSANIVNVNFMKSVIRSREAFSY 160 (416)
T ss_dssp HHSCTTSHHHHHHHHHCBCEECSSCEECSSCHHHHTTTSSCCBTSEEEEEEEEEEECTTCCEEEEEEEEEEEEBSEEEEH
T ss_pred HHHCCCCHHHHHHHHHCEEEECCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCEEEHHHHCCCCCCCH
T ss_conf 86299998999999848037589971144788886545205698202467765540210144420332012033322321
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~ev~~~l~~~~~~~~~~~~l~~L~~~a~~l~~~R~~~g~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~s~~lVeE~Mi~A 240 (416)
T d2vnud4 161 EQAQLRIDDKTQNDELTMGMRALLKLSVKLKQKRLEAGALNLASPEVKVHMDSETSDPNEVEIKKLLATNSLVEEFMLLA 240 (416)
T ss_dssp HHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCEEEEECSSSSCEEEEEECCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCHHHHHHHHHHH
T ss_conf 66788751354321000678999999999999998568754578742799423335565431122242014078776543
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 N~~vA~~l~~~~~~~~~~R~h~~p~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~ 320 (416)
T d2vnud4 241 NISVARKIYDAFPQTAMLRRHAAPPSTNFEILNEMLNTRKNMSISLESSKALADSLDRCVDPEDPYFNTLVRIMSTRCMM 320 (416)
T ss_dssp HHHHHHHHHHHCTTTCEEEEBCCCCGGGGHHHHHHHHHHHSCCCCCSCHHHHHHHHHTCCBTTBTTHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 08999999984788876400079997999999999997012676865225578999987475672699999999887788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~a~~~~~~~~s~~~~~H~gLgl~~YthfTSPIRRY~DLv~hrqL~a~l~~~~~~~~~~~~e~l~~i~~~~~~~e~~a~~a 400 (416)
T d2vnud4 321 AAQYFYSGAYSYPDFRHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYEPLSLTHRDKNKMDMICRNINRKHRNAQFA 400 (416)
T ss_dssp CCEEEEGGGSCGGGGCBTTTTBSCCCCCSCTTTBHHHHHHHHHHHHHTTSSCCCGGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87763015579976273765722015168677637899999999999737999977443999999999999999999999
Q ss_pred ---------------C
Q ss_conf ---------------9
Q 000711 482 ---------------S 482 (1338)
Q Consensus 482 ---------------s 482 (1338)
-
T Consensus 401 er~~~~~~~~~~lk~~ 416 (416)
T d2vnud4 401 GRASIEYYVGQVMRNN 416 (416)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 9999999999997578
|
| >d1igwa_ c.1.12.7 (A:) Isocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Isocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=31398.39 Aligned_cols=1 Identities=0% Similarity=-0.227 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 k~~~~~v~~~~~~w~~pRw~~ikR~Yta~dV~~lRgs~~~~~~~a~~~A~kL~~lL~~~~~~~~v~~lGa~d~~~A~~~~ 80 (416)
T d1igwa_ 1 KTRTQQIEELQKEWTQPRWEGITRPYSAEDVVKLRGSVNPECTLAQLGAAKMWRLLHGESKKGYINSLGALTGGQALQQA 80 (416)
T ss_dssp CCHHHHHHHHHHHTTSGGGTTCCCSSCHHHHHHTTCSCCCCCHHHHHHHHHHHHHHTTTSSSSSEEEEBCCSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHH
T ss_conf 96799999999986696515689998999999966985876837899999999998604445706547757799999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 kaGf~aiYvSG~~~sA~~~~~~~~~PD~gl~~~~~v~~~~~~I~~a~~~~d~~~~~~~~~~~~~~~~d~~lPIIADaDtG 160 (416)
T d1igwa_ 81 KAGIEAVYLSGWQVAADANLAASMYPDQSLYPANSVPAVVERINNTFRRADQIQWSAGIEPGDPRYVDYFLPIVADAEAG 160 (416)
T ss_dssp HHTCCCEEECHHHHHHHSCTTCCCCCSSSCSCTTHHHHHHHHHHHHHHHHHHHHHHTTCCTTCTTCCCCCCCEEEECTTC
T ss_pred HCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCC
T ss_conf 80998899646100165555678877765462889999999999988889999875200235444444310157742245
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 fG~~~nv~r~vk~~i~AGaagihiEDQ~~~~KkCGHl~gK~lv~~~e~~~ki~AA~~a~d~~~~~~~IiARTDA~~a~li 240 (416)
T d1igwa_ 161 FGGVLNAFELMKAMIEAGAAAVHFEDQLASVKKCGHMGGKVLVPTQEAIQKLVAARLCADVTGVPTLLVARTDADAADLI 240 (416)
T ss_dssp SSSHHHHHHHHHHHHHTTCSEEEEESBCGGGCCCC----CEECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECTTTCCEE
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHH
T ss_conf 67658999999999967871897226766430100148974678999999999999877427998279986230555444
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~sd~d~~D~~fi~g~Rt~eG~yr~~~G~d~aI~R~~aya~gADli~~Et~~~~~e~a~~fa~~v~~~~p~~~l~yn~SPs 320 (416)
T d1igwa_ 241 TSDCDPYDSEFITGERTSEGFFRTHAGIEQAISRGLAYAPYADLVWCETSTPDLELARRFAQAIHAKYPGKLLAYNCSPS 320 (416)
T ss_dssp SCCCCGGGGGGEEEEECTTSCEEECCSHHHHHHHHHHHGGGCSEEEECCSSCCHHHHHHHHHHHHHHSTTCEEEEECC--
T ss_pred HCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCHHHHHCCCCCCC
T ss_conf 20131115672057647343522247859999999984322667753168998999999998607876567623478887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 fnw~~~~~~~~~~~~~~eL~~lGy~~~~~~la~~ha~~~a~~~l~~~~~~~~gm~ayv~~~Q~~E~~~~~~g~~~~~hQ~ 400 (416)
T d1igwa_ 321 FNWQKNLDDKTIASFQQQLSDMGYKFQFITLAGIHSMWFNMFDLANAYAQGEGMKHYVEKVQQPEFAAAKDGYTFVSHQQ 400 (416)
T ss_dssp --------------HHHHHHHHTEEEEEETTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHTHHHHHHHHTTTCCTTSHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEHHH
T ss_conf 67201235567999999999659888996768999999999999999863498899999875898887744863020886
Q ss_pred ---------------C
Q ss_conf ---------------9
Q 000711 482 ---------------S 482 (1338)
Q Consensus 482 ---------------s 482 (1338)
-
T Consensus 401 ~~G~~y~D~~~~~~~g 416 (416)
T d1igwa_ 401 EVGTGYFDKVTTIIQG 416 (416)
T ss_dssp HTTHHHHHHHHHHHCC
T ss_pred HHCCCHHHHHHHHHCC
T ss_conf 7542489999987169
|
| >d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Isocitrate/Isopropylmalate dehydrogenase-like superfamily: Isocitrate/Isopropylmalate dehydrogenase-like family: Dimeric isocitrate & isopropylmalate dehydrogenases domain: Isocitrate dehydrogenase, ICDH species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=31396.66 Aligned_cols=1 Identities=0% Similarity=-1.622 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~IavipGDGIGPEV~~ealkVL~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~ 80 (416)
T d1pb1a_ 1 MESKVVVPAQGKKITLQNGKLNVPENPIIPYIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQ 80 (416)
T ss_dssp CCCCCCCCSSCBCCEEETTEEECCSSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECCSHHHHHHHCT
T ss_pred CCCCCCCCCCCCEEEEECCEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHCC
T ss_conf 99752279998679977998818999889998988624999999999999999874268985589998235799998499
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~lp~~t~~~~~~~da~l~Gav~~P~~~~~~~~~l~lR~~ldlyanvRP~r~~pg~~spl~~~~~iD~vIvREnteG~Y 160 (416)
T d1pb1a_ 81 DVWLPAETLDLIREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIY 160 (416)
T ss_dssp TCSSCHHHHHHHHHHSEEEECCCCCCSSSCCCCHHHHHHHHTTCCEEEEEEECCTTCCCSSSCGGGCEEEEEEECSSGGG
T ss_pred CCCCCHHHHHHHHHCCEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCC
T ss_conf 77799999999985498952886699988876667889987486474132002678886434556446599861134422
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~t~~~~~Ri~r~AF~~A~~~~r~~vt~v~Kanvl~~~~gl 240 (416)
T d1pb1a_ 161 AGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGA 240 (416)
T ss_dssp GCCEECTTCHHHHHHHHHHHHTSCCCCCSCCSSCCEECCCCCHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTCTTTHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHH
T ss_conf 45033456520688998766530530113653036765402122228999999999996699968999789765401678
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 f~~~~~e~a~e~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~vDa~~~~lv~~P~~fdViv~~NlfGDIlSDlaa~l~Ggl 320 (416)
T d1pb1a_ 241 FKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGI 320 (416)
T ss_dssp HHHHHHHHHHHHHCCEECTTSSCEEEECTTTCCEEEEEEEEHHHHHHHHHHCGGGCCEEEECHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHCCC
T ss_conf 99999999987631223344431101046676334289999999999985210467789613578777777888862376
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 Gl~pSanig~~~a~fEp~HGSAPdiaGk~iANP~a~Ils~amML~~lg~~~~A~~i~~Av~~~l~~g~~T~Dl~~~~~~g 400 (416)
T d1pb1a_ 321 GIAPGANIGDECALFEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKTVTYDFERLMDGA 400 (416)
T ss_dssp TTCCCEEECSSCEEEECCSCCCGGGTTSSCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTEECHHHHTTSSSC
T ss_pred CCCCCCCCCCCCEEEECCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 65445466877248877888615547999759299999999999987997899999999999997598124300046899
Q ss_pred ---------------C
Q ss_conf ---------------9
Q 000711 482 ---------------S 482 (1338)
Q Consensus 482 ---------------s 482 (1338)
=
T Consensus 401 g~~~T~e~~daI~~~l 416 (416)
T d1pb1a_ 401 KLLKCSEFGDAIIENM 416 (416)
T ss_dssp EECCHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHCC
T ss_conf 7727999999999659
|
| >d1dnva_ b.121.5.3 (A:) Densovirus capsid protein {Galleria mellonella densovirus [TaxId: 37138]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) superfamily: ssDNA viruses family: Densovirinae-like VP domain: Densovirus capsid protein species: Galleria mellonella densovirus [TaxId: 37138]
Probab=100.00 E-value=0 Score=31328.77 Aligned_cols=1 Identities=0% Similarity=-0.792 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~IpRPi~~~~~~~~tyrK~HkFltfGlA~kvi~~~~t~~t~~~~~lTTsLaeiPw~~p~~YMnpsEF~lLP~Gs~v~e 80 (415)
T d1dnva_ 1 VYIIPRPFSNFGKKLSTYTKSHKFMIFGLANNVIGPTGTGTTAVNRLLTTCLAEIPWQKLPLYMNQSEFDLLPPGSRVVE 80 (415)
T ss_dssp CCCCCCCCCCCCCEECCEEEEEEEEEECCCSCCCEECSSTTTCSBEEEEEEEEECCTTBGGGTCCHHHHHTCCTTCBCCC
T ss_pred CEEECCCCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHEEHHHCCCCCCCEECCHHHHHHCCCCCEEEE
T ss_conf 93746676778886799965446776200121001456662023232210151160345525248878710689866889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~vkvv~rn~RiAFeTnSS~T~lATLNQnk~~~~A~GLN~~~~G~nr~~T~f~s~epMiPt~t~~~~y~~v~~~~~y~~~ 160 (415)
T d1dnva_ 81 CNVKVIFRTNRIAFETSSTVTKQATLNQISNVQTAIGLNKLGWGINRAFTAFQSDQPMIPTATTAPKYEPVTGDTGYRGM 160 (415)
T ss_dssp EEEEEEEEEEEECCCCSCTTSCCCCSCCCCEEEEESTHHHHTTCBCCCCCCCCSSSCCSCCCCCCCCSSEECSSSCEECH
T ss_pred EEEEEEEECCEEEEEECCCCCCCEECCCCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 77899984670577755763101001022330110100302454213654556888745667786522355654689999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 v~~~YG~~~~n~~~~~~~~~~P~hq~g~~~~L~nYfc~~~~~~~~tgGwpcl~~hi~e~da~~~~g~~vl~~~YkPk~g~ 240 (415)
T d1dnva_ 161 IADYYGADSTNDTAFGNAGNYPHHQVSSFTFLQNYYCMYQQTNQGTGGWPCLAEHLQQFDSKTVNNQCLIDVTYKPKMGL 240 (415)
T ss_dssp HHHHHCCCSSCTTSSSSSSSCCGGGGCCEEECCCEEEECCBSSSSCCCCCCGGGGSEECCTTTTTTSBCCCCEECCSSCB
T ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCC
T ss_conf 99974766678633457777875672772110002577652046889836789998750256678857888852776432
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ik~P~~~~i~g~p~~~g~~sv~~n~~~~~~a~~~~~~~at~n~s~s~~nl~~~fp~~~~~iyt~IEKsQ~~~~G~~g~~~ 320 (415)
T d1dnva_ 241 IKSPLNYKIIGQPTVKGTISVGDNLVNMRGAVVTNPPEATQNVAESTHNLTRNFPADLFNIYSDIEKSQVLHKGPWGHEN 320 (415)
T ss_dssp CSCCCCBCCCCCTTBTTBBSCCCCCCCSCCSCEECCCCCBCSSSCBCCCCCEECCCCCCCCCSSCTTSSBSCCTTTCCCT
T ss_pred CCCCCCCCCCCCCCCCCCHHHCCCHHHCCCCCCCCCHHHHHHHHHHCCCHHHCCCCCCCCCCCHHHHHHHEECCCCCCCC
T ss_conf 46743354336655332120010044225765478255443321200204315884103023422133402126766668
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 p~iQPSlHIGv~pVPaLTTa~l~~~~~~~~n~TDt~~ywdV~~~~~V~~~~Pt~~P~~~~~nv~~~~~~y~~nl~~~~~t 400 (415)
T d1dnva_ 321 PQIQPSVHIGIQAVPALTTGALLINSSPLNSWTDSMGYIDVMSSCTVMEAQPTHFPFSTEANTNPGNTIYRINLTPNSLT 400 (415)
T ss_dssp TCCCCCCCCCCEEEEECCBCCCCSSCCSCCCBCCEEEEEEEEEEECCEECCCCCSTTCCSCCBCTTTCCCCCCCSSCSSC
T ss_pred CCCCCCEEECCEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCC
T ss_conf 75376246332204400113223378776762202589999988999855886544556678883303230446765556
Q ss_pred --------------C
Q ss_conf --------------9
Q 000711 482 --------------S 482 (1338)
Q Consensus 482 --------------s 482 (1338)
+
T Consensus 401 s~~~GlY~~~~~~~~ 415 (415)
T d1dnva_ 401 SAFNGLYGNGATLGN 415 (415)
T ss_dssp SSSCCSSSCCSSCCC
T ss_pred CCCCCEEECCHHCCC
T ss_conf 521212641110379
|
| >d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component, PP module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Pyruvate dehydrogenase E1 component, PP module species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=31326.15 Aligned_cols=1 Identities=0% Similarity=-0.992 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~~~~~~~~p~~~~~e~~~~~~iR~~~~~~v~~a~~~~~~~GGH~g~~ls~~~l~~vl~~~~~~~p~~~~~d~ 80 (415)
T d2ieaa2 1 ISNYINTIPVEEQPEYPGNLELERRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDVCFNHFFRARNEQDGGD 80 (415)
T ss_dssp CCCSSCSSCGGGCCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHTCSCCCCCCHHHHHHHHHHHHHHHHTCCCCCSSSCCC
T ss_pred CCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 99853688854368999889999999999999999999982678998898254679999999999985148987688887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~ilskGHas~~lYa~l~~~g~~~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~a~~~~~~a~~~ 160 (415)
T d2ieaa2 81 LVYFQGHISPGVYARAFLEGRLTQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRG 160 (415)
T ss_dssp EEECCGGGHHHHHHHHHHTTSSCHHHHTTBTCCTTSSCBCSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 79835750299999999839875035777753135789898888777888776798202157899999999987876530
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~gDg~~~eg~~~ea~~~a~~~~l~nl~~i~d~N~~~~~~~~~~~~~~~~~~~~~~~~~gw~v~~~~~~ 240 (415)
T d2ieaa2 161 LKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWG 240 (415)
T ss_dssp SCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCSSSBSCTTSCHHHHHHHHHHHTTCEEEEECBC
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCEEECCCHHCCCCCHHHHHHHHHHCCCEEEEEECC
T ss_conf 23578842899954320023899999988887288808999967863356671014311488999998648626874031
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~d~~~al~~~~~~~v~g~~~~~~~~~ga~~~~~~~~~~~~~~~l~~~l~~~~~~~l~~dGHd~~~l~~a~~~ 320 (415)
T d2ieaa2 241 SRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKK 320 (415)
T ss_dssp GGGHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTGGGSHHHHTTSTTSCHHHHTTCCBGGGCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCCCCCEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 02444320102434334121033431100002441566665303421046787663131455665315740446899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ak~~~d~P~vI~a~TiKGkGlp~A~e~~n~~H~~kkl~~Ee~~~~r~rl~~pl~d~~~e~~pf~~p~~~s~e~~~l~err 400 (415)
T d2ieaa2 321 AQETKGKATVILAHTIKGYGMGDAAEGKNIAHQVKKMNMDGVRHIRDRFNVPVSDADIEKLPYITFPEGSEEHTYLHAQR 400 (415)
T ss_dssp HHHCCSSCEEEEEECCTTTTCTTCC-------------CHHHHHHHHHTTCSCCHHHHTTCCCCCCCTTSHHHHHHHHHH
T ss_pred HHHCCCCCEEEEEECCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 98658996289973523368874334621012788899999999999839999813443179778888889999999999
Q ss_pred --------------C
Q ss_conf --------------9
Q 000711 482 --------------S 482 (1338)
Q Consensus 482 --------------s 482 (1338)
+
T Consensus 401 ~~Lgg~lP~r~~~~~ 415 (415)
T d2ieaa2 401 QKLHGYLPSRQPNFT 415 (415)
T ss_dssp HTTTSCSSCCCSSCC
T ss_pred HHHCCCCCCCCCCCC
T ss_conf 984898876787889
|
| >d1so2a_ a.211.1.2 (A:) cGMP-inhibited 3',5'-cyclic phosphodiesterase B, pde3b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: HD-domain/PDEase-like superfamily: HD-domain/PDEase-like family: PDEase domain: cGMP-inhibited 3',5'-cyclic phosphodiesterase B, pde3b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=31324.84 Aligned_cols=1 Identities=0% Similarity=-1.423 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~~~~l~~l~~W~Fd~f~l~~~~~~~~~~~L~~~~~~lf~~~gl~~~f~i~~~~l~~Fl~~v~~~Y~~nPYHN 80 (415)
T d1so2a_ 1 LDLILVEEYDSLIEKMSNWNFPIFELVEKMGEKSGRILSQVMYTLFQDTGLLEIFKIPTQQFMNYFRALENGYRDIPYHN 80 (415)
T ss_dssp CCSHHHHHHHHHHHHHTSTTCCHHHHHHHHGGGGGGHHHHHHHHHHHHTTHHHHTTCCHHHHHHHHHHHHTTSCSCSSSS
T ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHCCHHHCCCCCCHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 96110688999997224689882020155212334489999999999778377529899999999999998579998827
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~HA~dV~q~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lE~~alliAA 160 (415)
T d1so2a_ 81 RIHATDVLHAVWYLTTRPVPGLQQIHNGCGTGNETDSDGRINHGRIAYISSKSCSNPDESYGCLSSNIPALELMALYVAA 160 (415)
T ss_dssp HHHHHHHHHHHHHHTTSCEETCCCCCCC---------------CCCCCCCCTTCCCSSTTEECGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHH
T ss_conf 89999999999999956554422111222233221111222332100122222333322201565408999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 l~HDvdHpG~nN~Flv~t~~pLA~lYnd~SVLEnhH~a~a~~lll~~~~~nil~~l~~~e~~~~r~lii~~ILATDm~~H 240 (415)
T d1so2a_ 161 AMHDYDHPGRTNAFLVATNAPQAVLYNDRSVLENHHAASAWNLYLSRPEYNFLLHLDHVEFKRFRFLVIEAILATDLKKH 240 (415)
T ss_dssp HHTTTTCCSCCHHHHHHTTCHHHHHTTTSSHHHHHHHHHHHHHHHTCGGGCTTTTSCHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHCCCCCCCCHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 97226999966889987188789985898888999999999999648542143069999999999999999970464567
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 f~~l~~f~~~~~~~~~~~~~~~~~~~r~lv~~~lik~ADIs~~~rp~~v~~~W~~~l~~EF~~QGd~E~~lglp~sp~~D 320 (415)
T d1so2a_ 241 FDFLAEFNAKANDVNSNGIEWSNENDRLLVCQVCIKLADINGPAKVRDLHLKWTEGIVNEFYEQGDEEANLGLPISPFMD 320 (415)
T ss_dssp HHHHHHHHHHHTSSSCCCCCTTCHHHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTCC
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99999999998740047767787888999999999998624744582889999999999999987799866999985668
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 R~~~~~~k~QigFi~~iv~PLf~~l~~a~~~~~~~~~~~~~n~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (415)
T d1so2a_ 321 RSSPQLAKLQESFITHIVGPLCNSYDAAGLLPGQWLEAEEDNDTESGDDEDGEELDTEDEEMENNLNPKPPRRKSRRRIF 400 (415)
T ss_dssp TTSCCHHHHHHHHHHHTHHHHHHHHHHTTCSCCEECC-------------------------------------CCSSEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 66564157899999998999999999983255999999998898778757664134400015554455776056677776
Q ss_pred --------------C
Q ss_conf --------------9
Q 000711 482 --------------S 482 (1338)
Q Consensus 482 --------------s 482 (1338)
-
T Consensus 401 ~~~~~~l~en~~~w~ 415 (415)
T d1so2a_ 401 CQLMHHLTENHKIWK 415 (415)
T ss_dssp CHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 689999986255129
|
| >d16pka_ c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=0 Score=31324.46 Aligned_cols=1 Identities=0% Similarity=-0.227 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~ktl~d~~~~~K~VlvRvD~NvPi~~g~I~d~~RI~~~~pTi~~ll~~~akvvl~SH~GRPkg~~~~~~~~~~~~~~~~ 80 (415)
T d16pka_ 1 EKKSINECDLKGKKVLIRVDFNVPVKNGKITNDYRIRSALPTLKKVLTEGGSCVLMSHLGRPKGIPMAQAGKIRSTGGVP 80 (415)
T ss_dssp CBCBGGGSCCTTCEEEEEECCCCCEETTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCCBCGGGHHHHHHTTCCT
T ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99741013878998999934675555995897388999999999999788979999058998987555322222223312
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~sL~~~a~~L~~~l~~~V~f~~~~~~~~~~i~~l~~g~i~LLEN~Rf~~eE~~~~~~~~~~fak~LA~laDiyVN 160 (415)
T d16pka_ 81 GFQQKATLKPVAKRLSELLLRPVTFAPDCLNAADVVSKMSPGDVVLLENVRFYKEEGSKKAKDREAMAKILASYGDVYIS 160 (415)
T ss_dssp TCCGGGCSHHHHHHHHHHHTSCCEEESCTTSCHHHHHTCCTTCEEEECCGGGBGGGGCSSHHHHHHHHHHHHTTCSEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEE
T ss_conf 36833473889999998758674234431024456650577416874200024532322122138999998722868994
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 DAFg~sHR~haS~~Gi~~~lps~~gg~L~ekEl~~L~~~l~~p~~P~~aIlGGaKisdKi~~i~~l~~k~D~iligG~~a 240 (415)
T d16pka_ 161 DAFGTAHRDSATMTGIPKILGNGAAGYLMEKEISYFAKVLGNPPRPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGAMA 240 (415)
T ss_dssp ECGGGTTSCCTTTTHHHHHHTCCEECHHHHHHHHHHHHHHSCCCSSEEEEECSSCSGGGHHHHHHHGGGCSEEEECTTHH
T ss_pred CCCCHHHCCCCCEECCHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCEEEECCHHH
T ss_conf 56202204675122200014224678999999999999970977551899853653437999998885365565322188
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ntfL~a~G~~iG~sl~e~~~~~~a~~i~~~~~~~~~~i~lP~D~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIG~~Ti~~ 320 (415)
T d16pka_ 241 YTFLKAQGYSIGKSKCEESKLEFARSLLKKAEDRKVQVILPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIEK 320 (415)
T ss_dssp HHHHHHHTCCCTTCCCCGGGHHHHHHHHHHHHHTTCEEECCSSEEEESSSSCCSSCEECSSSCCCTTCEEEEECHHHHHH
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 89999809805544304443212666522321151678511203303101334443112222234543777787776667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~~I~~AktI~wNGP~GvfE~~~F~~GT~~l~~~ia~~t~~~~~~sivGGGdT~aai~~~g~~~~~~hvSTGGGA~L~~ 400 (415)
T d16pka_ 321 YVQTIGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRGTHEHGLMSIIGGGDSASAAELSGEAKRMSHVSTGGGASLEL 400 (415)
T ss_dssp HHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHHHCCEEEECSHHHHHHHHHTTCTTTSSEECSCHHHHHHH
T ss_pred HHHHHHHHCEEEEECCEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCCCCEEECCHHHHHHH
T ss_conf 76766513569996653213155151799999999998413479989987789999999719735870798778999999
Q ss_pred --------------C
Q ss_conf --------------9
Q 000711 482 --------------S 482 (1338)
Q Consensus 482 --------------s 482 (1338)
-
T Consensus 401 L~G~~LPgi~aL~~k 415 (415)
T d16pka_ 401 LEGKTLPGVTVLDDK 415 (415)
T ss_dssp HTTCCCHHHHTSCBC
T ss_pred HCCCCCCHHHHHHCC
T ss_conf 879996257785069
|
| >d1qpga_ c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=31323.50 Aligned_cols=1 Identities=0% Similarity=0.172 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~kltl~d~dl~gK~VlvRvD~NvPi~~g~I~Dd~RI~~~lpTI~~L~~~~ak~vIL~SH~GRP~g~~~~~~Sl~~va 80 (415)
T d1qpga_ 1 SLSSKLSVQDLDLKDKRVFIRVDFNVPLDGKKITSNQRIVAALPTIKYVLEHHPRYVVLASHLGQPNGERNEKYSLAPVA 80 (415)
T ss_dssp CTTSBCBGGGCCCTTCEEEEECCCCCCBSSSSBSCCHHHHHHHHHHHHHHTTCCSEEEEECCCSCCCSSCCGGGCSHHHH
T ss_pred CCCCCCCHHHCCCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHH
T ss_conf 98666850322757998999932467643997896789999999999999879988999624899999879776869999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~L~~~l~~~V~f~~d~~g~~~~~~i~~l~~g~I~LLENvRF~~eE~~~~~~~~~~~~~~~~n~~~fak~La~laDiyVN 160 (415)
T d1qpga_ 81 KELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENLRYHIEEEGSRKVDGQKVKASKEDVQKFRHELSSLADVYIN 160 (415)
T ss_dssp HHHHHHHTSCCEEESCSSSHHHHHHHHTCCTTEEEEECCGGGSHHHHTEEEETTEEEECCHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 99985319846984577776311012334467579942111143310246543011100100269999987547848996
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 DAFg~aHR~haS~~g~~~~~s~aG~lmekEl~~L~~~l~~p~rP~vaIlGGaKvsdKi~vl~~l~~k~D~iiigG~mant 240 (415)
T d1qpga_ 161 DAFGTAHRAHSSMVGFDLPQRAAGFLLEKELKYFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFT 240 (415)
T ss_dssp CCGGGTTSCCHHHHCCCCSCEEECHHHHHHHHHHHHHHSSCCSSEEEEECSSCSGGGHHHHHHHTTTCSEEEECGGGHHH
T ss_pred CCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCEEEEECHHHHH
T ss_conf 55011100565423455785633288999999999996499998599995476442899998787535557751103577
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 flk~~~g~~ig~s~~e~~~~~~~~~i~~~a~~~~~~i~lP~D~~v~~~~~~~~~~~~~~~~~~i~~~~~i~DIG~~Ti~~ 320 (415)
T d1qpga_ 241 FKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKL 320 (415)
T ss_dssp HHHHHSCCCCCSCCCCHHHHHHHHHHHHHHHHHTCEEECCSEEEEESSSSSSCCCCEEETTTCCCTTCEEEEECHHHHHH
T ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHH
T ss_conf 88760377666531122211023689999876598675512278730245555531230013558765123466046789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~~I~~a~tI~wNGP~GvfE~~~F~~GT~~i~~~ia~~~~~~~~sivGGGdT~aai~~~g~~~~~~hvSTGGGA~L~~L 400 (415)
T d1qpga_ 321 FAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKSSAAGNTVIIGGGDTATVAKKYGVTDKISHVSTGGGASLELL 400 (415)
T ss_dssp HHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHHTCEEEECCHHHHHHHHHTTCGGGSSEECCCTHHHHHHH
T ss_pred HHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCCCCCCCCEEECCHHHHHHHH
T ss_conf 99875368679997774152465240689999999997215798299957899999997598568806967789999998
Q ss_pred --------------C
Q ss_conf --------------9
Q 000711 482 --------------S 482 (1338)
Q Consensus 482 --------------s 482 (1338)
-
T Consensus 401 ~G~~LPgi~aL~~~k 415 (415)
T d1qpga_ 401 EGKELPGVAFLSEKK 415 (415)
T ss_dssp TSCCCHHHHTSCBCC
T ss_pred CCCCCCHHHHHHHCC
T ss_conf 799970798885288
|
| >d2qeec1 c.1.9.8 (C:2-416) Uncharacterized protein BH0493 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Uronate isomerase-like domain: Uncharacterized protein BH0493 species: Bacillus halodurans [TaxId: 86665]
Probab=100.00 E-value=0 Score=31319.54 Aligned_cols=1 Identities=0% Similarity=0.305 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
.
T Consensus 1 ~~~s~~~ia~~L~~~i~~~PIID~H~HL~p~~~~~~~f~~~~~l~~~hyyk~r~mr~~gv~e~~itg~~~~~~~~~~~~~ 80 (415)
T d2qeec1 1 SINSREVLAEKVKNAVNNQPVTDMHTHLFSPNFGEILLWDIDELLTYHYLVAEVMRWTDVSIEAFWAMSKREQADLIWEE 80 (415)
T ss_dssp CCCCHHHHHHHHHHHHHHSCEEECSCSCCCGGGGGGSBCSHHHHHTSHHHHHHHHTTCCSCHHHHHHSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHH
T ss_conf 97458999999999975898868888969778511677881888431799999998539998980789847889999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~p~~~w~~~~l~~~~~l~~~~~~~~~~~i~~~~~~~~~e~~~r~ll~~~nVe~v~tTDdP~D~L~~H~~~~~~~~ 160 (415)
T d2qeec1 81 LFIKRSPVSEACRGVLTCLQGLGLDPATRDLQVYREYFAKKTSEEQVDTVLQLANVSDVVMTNDPFDDNERISWLEGKQP 160 (415)
T ss_dssp HTTSSCCCSHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHTCCHHHHHHHHHHHTTEEEEECCBCTTCHHHHHHHHTTCCC
T ss_pred HHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 97428935899999888852567666767899999999762511179999998282035213797321899998604688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~v~ptfRpD~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 240 (415)
T d2qeec1 161 DSRFHAALRLDPLLNEYEQTKHRLRDWGYKVNDEWNEGSIQEVKRFLTDWIERMDPVYMAVSLPPTFSFPEESNRGRIIR 240 (415)
T ss_dssp CTTEECCEECHHHHHCHHHHHHHHHHTTCCCCSSCSHHHHHHHHHHHHHHHHHHCCSCEEEEECTTCCSSCSSHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 75223002479886321007899999886145644576799999999999987325688885687788677999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~l~~~~~e~g~~mQlH~Ga~Rn~n~~~~~~g~~~g~~~~~~L~~ll~~~~~~k~il~~l~~~~~~e~a~lag~f~~v~l 320 (415)
T d2qeec1 241 DCLLPVAEKHNIPFAMMIGVKKRVHPALGDAGDFVGKASMDGVEHLLREYPNNKFLVTMLSRENQHELVVLARKFSNLMI 320 (415)
T ss_dssp HTHHHHHHHHTCCEEEEECEETTSSGGGGGGGCEECCCCSHHHHHHHHHCTTSCEEEEECCGGGHHHHHHHHHHCTTEEE
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCEEE
T ss_conf 99999987569817873376667773103478775767999999999848998879996896538999999853887067
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 gg~WWf~d~~~gm~~~l~~~~e~~~~~fvg~~TDsRsf~~~~~rheyfRRil~~~L~~~v~d~v~~g~~~~~~~l~~~v~ 400 (415)
T d2qeec1 321 FGCWWFMNNPEIINEMTRMRMEMLGTSFIPQHSDARVLEQLIYKWHHSKSIIAEVLIDKYDDILQAGWEVTEEEIKRDVA 400 (415)
T ss_dssp BCCCGGGCSHHHHHHHHHHHHHHHTTCSBCCCCCCSBTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCEEECCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 77016636899999999999874400112254586644303378999999999999999999973689997999999999
Q ss_pred --------------C
Q ss_conf --------------9
Q 000711 482 --------------S 482 (1338)
Q Consensus 482 --------------s 482 (1338)
-
T Consensus 401 dI~y~Na~~yfg~~~ 415 (415)
T d2qeec1 401 DLFSRNFWRFVGRND 415 (415)
T ss_dssp HHHTHHHHHHHTCCC
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 999999999828899
|
| >d1s5ja2 e.8.1.1 (A:450-864) Family B DNA polymerase {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: DNA polymerase I domain: Family B DNA polymerase species: Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=31317.81 Aligned_cols=1 Identities=0% Similarity=-0.858 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~iP~k~~~~~~~~~~~~~~~~~~~~y~Gg~V~~P~~G~~~~V~~lDf~SLYPSii~~~Ni~ 80 (415)
T d1s5ja2 1 EISTWVKNLYYWEHRKRNWLIPLKEEILAKSSNIRTSALIKGKGYKGAVVIDPPAGIFFNITVLDFASLYPSIIRTWNLS 80 (415)
T ss_dssp CHHHHHHHHHHHHHHHHTBCCCCHHHHHHTTCC--------------CCCCCCCSEEEEEEEEEEETTHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCHHHHHCCCCCCCCCEEECCCCCCCCCCEEEEECCCCCHHHHHHHCCC
T ss_conf 96489999999999977985789742245453201110034577387387079987657647878345339999996889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~R~~~~~~~~k~~~~~~~~~~~~d~~Q~A~Ki~~NS~ 160 (415)
T d1s5ja2 81 YETVDIQQCKKPYEVKDETGEVLHIVCMDRPGITAVITGLLRDFRVKIYKKKAKNPNNSEEQKLLYDVVQRAMKVFINAT 160 (415)
T ss_dssp TTTBSCSCCSSCCEECCSSSCCCEEBCCSSCCHHHHHHHHHHHHHHHTHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 30237534578765445799745786378887427899999999987420021123442268888788999999877777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 YG~~G~~~~~~~~~~~A~~iT~~GR~~i~~~~~~~~~~g~~viygDTDSv~v~~~~~~~~e~~~~~i~~~~~~~le~e~~ 240 (415)
T d1s5ja2 161 YGVFGAETFPLYAPRVAESVTALGRYVITSTVKKAREEGLTVLYGDTDSLFLLNPPKNSLENIIKWVKTTFNLDLEVDKT 240 (415)
T ss_dssp HHHHHSTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEETTEEEEESCCHHHHHHHHHHHHHHSSCCEEEEEE
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 77775466442328999899999999999888876605962466423314896288753999999987332212554425
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~KKrY~g~~~dgkl~~kGie~vRrd~~~~~k~~~~~vl~~il~~~~~~~~~~~~~~i~~~l~~~~~~l~~~~ 320 (415)
T d1s5ja2 241 YKFVAFSGLKKNYFGVYQDGKVDIKGMLVKKRNTPEFVKKVFNEVKELMISINSPNDVKEIKRKIVDVVKGSYEKLKNKG 320 (415)
T ss_dssp EEEEEEC----CEEEECSSSCCCEESCCC--------CCSHHHHHHHHHHTTCCSCCTTHHHHHHHHHHHHHHCTTC---
T ss_pred EEHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 51664431033203220255400110000356537889999999999997169878888878899999999999986079
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 i~~~dl~~~k~l~k~~~~Y~~~~p~hv~~A~~l~~~g~~~~~GdrI~YViv~~~~~~~p~~~~~~~~iD~~yYi~~l~~p 400 (415)
T d1s5ja2 321 YNLDELAFKVMLSKPLDAYKKNTPQHVKAALQLRPFGVNVLPRDIIYYVKVRSKDGVKPVQLAKVTEIDAEKYLEALRST 400 (415)
T ss_dssp -------------------------------------------------------------------CCSSTTHHHHHTT
T ss_pred CCHHHHCCCCCCCCCHHHCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 78688202320146734311799389999999985599999989899999947999882220357998889999999999
Q ss_pred --------------C
Q ss_conf --------------9
Q 000711 482 --------------S 482 (1338)
Q Consensus 482 --------------s 482 (1338)
-
T Consensus 401 l~~il~~~g~~~~el 415 (415)
T d1s5ja2 401 FEQILRAFGVSWDEI 415 (415)
T ss_dssp STTHHHHHSCCCCCC
T ss_pred HHHHHHHHCCCHHHC
T ss_conf 999998628994439
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=31252.28 Aligned_cols=1 Identities=0% Similarity=0.537 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~aFd~i~l~Pr~L~dvs~i 80 (414)
T d1kbia1 1 APGETKEDIARKEQLKSLLPPLDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKV 80 (414)
T ss_dssp CTTCCHHHHHHHHHHHHTCCCGGGCCSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGCEECCCCSCCCSSC
T ss_pred CCCCCHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHCEEECCCCCCCCCC
T ss_conf 99885444556777631599812167999999999986888888887146665099999999997360665335787678
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 Dlst~~lG~~l~~P~~Isp~g~~~~~~~~~~~~~~A~a~aa~~~~~~~~ls~~~~~~~~~~~~~a~~~~~~~~~q~y~~~ 160 (414)
T d1kbia1 81 DISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQWYQLYVNS 160 (414)
T ss_dssp BCCEEETTEEESSSEEECCCSCGGGTCTTTTHHHHHHHHHSSSSCCCEEECTTCSSCHHHHHHTCCCSSCCEEEEECCCS
T ss_pred CCCEEECCCCCCCCEEECHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHCCCCCC
T ss_conf 88534898417888788745640456822367887764777641365322322346568899872177541011021124
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~l~~ra~~ag~~al~~tvD~~~~g~re~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~i~~ 240 (414)
T d1kbia1 161 DRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKFIDPSLTWKDIEE 240 (414)
T ss_dssp SHHHHHHHHHHHHHHTCSCEEEECSCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGCBTTBCTTCCHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHH
T ss_conf 58889999999987188510123344324651787872556654331444203554553277899985066899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 i~~~~~~~~i~kgi~~~~da~~~~~~G~~~i~vsnhggr~~d~~~~~~~~l~~i~~~~~~~~v~~~~~viadGGIR~G~D 320 (414)
T d1kbia1 241 LKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTD 320 (414)
T ss_dssp HHHHCSSCEEEEEECSHHHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHH
T ss_pred HHCCCCCEEEEECCCHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHH
T ss_conf 86157752775200006777788743886245223211111112200000024666664111488513885388676789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 VaKALALGAdaVgigrp~L~~la~~G~egv~~~l~~l~~EL~~~M~l~G~~si~eL~~~~l~~~~~~~~~~~~p~~~~~~ 400 (414)
T d1kbia1 321 VLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAELKPDLLDLSTLKARTVGVPNDVLYN 400 (414)
T ss_dssp HHHHHHHTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBGGGCCGGGEECTTTTCEECCCCCCHHHH
T ss_pred HHHHHHCCCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHCCCCCCCCCCCCCCCCHHHC
T ss_conf 99999758998877689999998446999999999999999999998589997891998834232243367899512210
Q ss_pred -------------C
Q ss_conf -------------9
Q 000711 482 -------------S 482 (1338)
Q Consensus 482 -------------s 482 (1338)
+
T Consensus 401 ~~~~~~~~~~~~~~ 414 (414)
T d1kbia1 401 EVYEGPTLTEFEDA 414 (414)
T ss_dssp HHCCCCCCCCCCCC
T ss_pred CCCCCCCCCCCCCC
T ss_conf 35678775333679
|
| >d2b8na1 c.118.1.1 (A:4-417) Putative glycerate kinase (hypothetical protein TM1585) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: GckA/TtuD-like superfamily: GckA/TtuD-like family: GckA/TtuD-like domain: Putative glycerate kinase (hypothetical protein TM1585) species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=31251.34 Aligned_cols=1 Identities=0% Similarity=-0.858 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~lr~~~~~if~a~v~av~P~~~v~~~l~~~~~~~i~vvg~GKAa~~MA~~~~~~lg~~i~~g~vv~~~~~~~~~~~~i 80 (414)
T d2b8na1 1 PESLKKLAIEIVKKSIEAVFPDRAVKETLPKLNLDRVILVAVGKAAWRMAKAAYEVLGKKIRKGVVVTKYGHSEGPIDDF 80 (414)
T ss_dssp CHHHHHHHHHHHHHHHHTTSHHHHHHTTHHHHCCCSEEEEEESTTHHHHHHHHHHHHGGGEEEEEEEEETTCCCSCCTTC
T ss_pred CHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCE
T ss_conf 95689999999999998419789999847757999889999818999999999997276677059995898677888874
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~v~~a~HP~Pd~~s~~Aa~~il~~~~~~~~~Dlvl~LISGGgSALl~~P~~gitL~dk~~~~~~Ll~sGA~I~eiN~VRk 160 (414)
T d2b8na1 81 EIYEAGHPVPDENTIKTTRRVLELVDQLNENDTVLFLLSGGGSSLFELPLEGVSLEEIQKLTSALLKSGASIEEINTVRK 160 (414)
T ss_dssp EEEEECSSSCCHHHHHHHHHHHHHHSSCCTTCEEEEEECTTHHHHSCCBCTTCCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 89978999998779999999999996489887689985088540011488999999999999999858998799999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~lS~iKGG~La~~a~pa~v~sLilSDV~GDdl~~IaSGPTvpd~~t~~da~~il~~y~l~~p~~v~~~l~~~~~~~~~~v 240 (414)
T d2b8na1 161 HLSQVKGGRFAERVFPAKVVALVLSDVLGDRLDVIASGPAWPDSSTSEDALKVLEKYGIETSESVKRAILQETPKHLSNV 240 (414)
T ss_dssp TTBSSTTTHHHHHHTTSEEEEEEECCSTTCCTTTGGGCTTSCCCCCHHHHHHHHHHTTCCCCHHHHHHHTSCCCSCCSSE
T ss_pred HHHHCCCCHHHHHHCCCCEEEEEEECCCCCCCHHEECCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf 98753662799971558568999805889981312048867899888999999998398777689986513578433454
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~ii~~n~~al~aa~~~a~~~G~~~~~~~~~l~Gea~~va~~~a~~~~~~~~~~~~~~~p~~li~GGEtTV~v~g~G~G 320 (414)
T d2b8na1 241 EIHLIGNVQKVCDEAKSLAKEKGFNAEIITTSLDCEAREAGRFIASIMKEVKFKDRPLKKPAALIFGGETVVHVKGNGIG 320 (414)
T ss_dssp EEEEEECHHHHHHHHHHHHHHTTCEEEEEEEEECSBHHHHHHHHHHHHHHHHHHCCSSCSSEEEEEEECCBCCCCSCCCC
T ss_pred CEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEEEEEECCCCCC
T ss_conf 13895689999999999998749943995342457689999999999999985278888974899756568870689998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 GRNqElaL~~a~~l~~~~~~~~ls~gTDG~DGptdaAGAivd~~t~~~~~~~gld~~~~L~~~DS~~f~~~~~~li~TGp 400 (414)
T d2b8na1 321 GRNQELALSAAIALEGIEGVILCSAGTDGTDGPTDAAGGIVDGSTAKTLKAMGEDPYQYLKNNDSYNALKKSGALLITGP 400 (414)
T ss_dssp CHHHHHHHHHHHHTTTCTTEEEEEEETTSCCSSSSCCEEEEETTHHHHHHHTTCCHHHHHHTTCHHHHHHHTTCEECCCC
T ss_pred CCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEECHHHHHHHHHCCCCHHHHHHHCCCHHHHHHCCCEECCCC
T ss_conf 64399999999983699996999975478878988775887662799999869999999987786999997699786199
Q ss_pred -------------C
Q ss_conf -------------9
Q 000711 482 -------------S 482 (1338)
Q Consensus 482 -------------s 482 (1338)
-
T Consensus 401 TgTNV~Dl~i~li~ 414 (414)
T d2b8na1 401 TGTNVNDLIIGLIV 414 (414)
T ss_dssp CSCCCCEEEEEEEC
T ss_pred CCCCHHHHEEEEEC
T ss_conf 99656350777969
|
| >d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ALDH-like superfamily: ALDH-like family: ALDH-like domain: Gamma-glutamyl phosphate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=31246.64 Aligned_cols=1 Identities=0% Similarity=0.106 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ee~~~a~~~A~~Af~~w~~~s~~eR~~iL~k~a~~l~~~~~eia~~~~~e~gk~~~~~~~e~~~~rl~~~~~~i~~~~~~ 80 (414)
T d1o20a_ 1 DELLEKAKKVREAWDVLRNATTREKNKAIKKIAEKLDERRKEILEANRIDVEKARERGVKESLVDRLALNDKRIDEMIKA 80 (414)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCCHHHHHHHCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHH
T ss_conf 97999999999999998629999999999999999997699999999999865886041177787874249999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~p~n~p~~~~~~~~~~alaaGN~vvlKps~~tp~~~~~~~~l~ 160 (414)
T d1o20a_ 81 CETVIGLKDPVGEVIDSWVREDGLRIARVRVPIGPIGIIYESRPNVTVETTILALKSGNTILLRGGSDALNSNKAIVSAI 160 (414)
T ss_dssp HHHHHHSCCCTTCEEEEEECTTSCEEEEEEEECCCEEEECCSCTHHHHHHHHHHHHTTCCEEEECCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHCCCHHEECCCCHHCCCCCCCCCCCCHHHHHH
T ss_conf 99999865511233443344332101211221232012315717776514101001365201045600011002034677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~le~gGgn~~viv~~dAd~~~A~ 240 (414)
T d1o20a_ 161 REALKETEIPESSVEFIENTDRSLVLEMIRLREYLSLVIPRGGYGLISFVRDNATVPVLETGVGNCHIFVDESADLKKAV 240 (414)
T ss_dssp HHHHTTSSSCGGGEEECCCCCTHHHHHHTTCTTTCSEEEECSCHHHHHHHHHHCSSCBCCCCCCCEEEEECTTSCHHHHH
T ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHCCCCCEECCCCCCCCEECCCCCCHHHHH
T ss_conf 76543212432124555543103444123334358699746079999876540344021046987871053335434456
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~gq~C~a~~r~~V~~~i~d~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~FgPvl~v~~~ 320 (414)
T d1o20a_ 241 PVIINAKTQRPGTCNAAEKLLVHEKIAKEFLPVIVEELRKHGVEVRGCEKTREIVPDVVPATEDDWPTEYLDLIIAIKVV 320 (414)
T ss_dssp HHHHHHHHSCTTSTTSEEEEEEEHHHHHHHHHHHHHHHHHTTCEEEECHHHHHHSTTSEECCGGGTTCCCCSSEEEEEEE
T ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCEECCCCCCCCEEEEEEEEEEEE
T ss_conf 68875441378643355522010889999999986899976986555465542110000002456770220037999994
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~dEAI~~aN~~~yGLsa~I~T~d~~~a~~~~~~i~~G~V~IN~~~~~~~~~~~g~g~~~G~~~~~~~~~G~~gl~~~t 400 (414)
T d1o20a_ 321 KNVDEAIEHIKKYSTGHSESILTENYSNAKKFVSEIDAAAVYVNASTRFTDGGQFGFGAEIGISTQRFHARGPVGLRELT 400 (414)
T ss_dssp SSHHHHHHHHHHHCCSSEEEEECSCHHHHHHHHHHCCSSEEEESSCGGGCSTTTTTCSCCSCEECSSSSCCEECCTGGGE
T ss_pred CCHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHC
T ss_conf 99999999985589998179995899999999983981499991898688888879978156249989987456799849
Q ss_pred -------------C
Q ss_conf -------------9
Q 000711 482 -------------S 482 (1338)
Q Consensus 482 -------------s 482 (1338)
-
T Consensus 401 ~~K~vv~~~~~~~~ 414 (414)
T d1o20a_ 401 TYKFVVLGEYHVRE 414 (414)
T ss_dssp EEEEEEECSSCCCC
T ss_pred EEEEEEECCCCCCC
T ss_conf 57799987875378
|
| >d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Isocitrate/Isopropylmalate dehydrogenase-like superfamily: Isocitrate/Isopropylmalate dehydrogenase-like family: Dimeric isocitrate & isopropylmalate dehydrogenases domain: NADP-dependent isocitrate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=31244.90 Aligned_cols=1 Identities=0% Similarity=-1.856 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~iV~l~GDE~tr~i~~~i~~~~~~~~~di~~~~~d~G~e~~~~tg~~l~~daieaik~~~v~lkG~~~tP~~ 80 (414)
T d1t0la_ 1 MSKKISGGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNVGVKCATITPDE 80 (414)
T ss_dssp CCCCEEEEEEEEEECCHHHHHHHHHHHHHTTTTTEEEEEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCH
T ss_pred CCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCC
T ss_conf 98643368779956718999999999999707897752799826789998629967799999998669886678679873
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~s~n~~lR~~~~~~~~~rp~~~~~~~~~~~~~~~d~vvvREnteg~Y~g~e~~~~~~~~~~~~~~~~~ 160 (414)
T d1t0la_ 81 KRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPSD 160 (414)
T ss_dssp HHHHHHTCSSCCCCHHHHHHHHHCCEEEEEECCCTTCCCSBTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCEEEECCCCCCCEEEEEEEECCCCEEEEEEEECC
T ss_conf 33330012211010028889862765231126864899876787674367404554425436899779860689985046
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~a~~~a~~~r~~v~~~~K~nv~~~t~glfr~~~~eva~~yp~~~~~ 240 (414)
T d1t0la_ 161 GTQKVTYLVHNFEEGGGVAMGMYNQDKSIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFE 240 (414)
T ss_dssp CSCCEEEEEEEECSCCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCCCEEECCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 65310000123467784268776205566788889999998469735875035614445288999999999876330134
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~v~~~~~~~Da~~~~~~~~p~fdVivt~NLfGDILSDl~a~l~GglGl~pSanig~~~~~~~fe~~hg~aP~hGsapd 320 (414)
T d1t0la_ 241 AQKIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAHGTVTRHYRMYQ 320 (414)
T ss_dssp HTTCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSSCEEEECSSCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHC
T ss_conf 32025666677789874148988728997674530566566562577431210115764334412355555543221001
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 iAGk~iANP~A~ILS~amML~~lg~~d~~~~l~~~A~~Ie~Av~~~l~~G~~T~DlgG~~~~~~~~~~~~~lsT~ef~da 400 (414)
T d1t0la_ 321 KGQETSTNPIASIFAWTRGLAHRAKLDNNKELAFFANALEEVSIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDK 400 (414)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHSCGGGCCGGGCCCHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 37766539099999999999985265643689999999999999999679988231877666665556676589999999
Q ss_pred -------------C
Q ss_conf -------------9
Q 000711 482 -------------S 482 (1338)
Q Consensus 482 -------------s 482 (1338)
-
T Consensus 401 vi~~L~~~l~~~~~ 414 (414)
T d1t0la_ 401 LGENLKIKLAQAKL 414 (414)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999998865659
|
| >d1vh4a_ b.80.6.1 (A:) Stabilizer of iron transporter SufD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Stabilizer of iron transporter SufD family: Stabilizer of iron transporter SufD domain: Stabilizer of iron transporter SufD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=31173.81 Aligned_cols=1 Identities=0% Similarity=0.272 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~GlPt~k~E~WKyT~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf 80 (413)
T d1vh4a_ 1 NALQQWHHLFEAEGTKRSPQAQQHLQQLLRTGLPTRKHENWKYTPLEGLINSQFVSIAGEISPQQRDALALTLDSVRLVF 80 (413)
T ss_dssp CHHHHHHHHHHC---CCCHHHHHHHHHHHHHCCCCTTSTTCTTCCCHHHHTSCEECCCCCCCHHHHHHHCCCCCSEEEEE
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCEEEEE
T ss_conf 97899999998628846299999999999729889987281479879974357765677668002000234568548999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 vnG~~~~~ls~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~LN~a~~~~g~~I~V~~~~~~~~PI~i~~~~~~~~~~~~~~ 160 (413)
T d1vh4a_ 81 VDGRYVPALSDATEGSGYEVSINDDRQGLPDAIQAEVFLHLTESLAQSVTHIAVKRGQRPAKPLLLMHITQGVAGEEVNT 160 (413)
T ss_dssp ETTEECGGGSCCCTTSSCEEEEESCCTTCCCCSSCCHHHHHHHHHCSCEEEEEECTTCCCSSCEEEEEEECCCSSSCEEE
T ss_pred ECCEECHHCCCCCCCCCEEEECHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEECCCEEECCCCEEEEEECCCCCCCCCC
T ss_conf 89998210056755577288515755404110110012332321025432674125357604541467503644344333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~r~~I~v~ena~v~iiE~~~~~~~~~~~~n~~~ei~l~~nA~l~~~~iq~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 240 (413)
T d1vh4a_ 161 AHYRHHLDLAEGAEATVIEHFVSLNDARHFTGARFTINVAANAHLQHIKLAFENPLSHHFAHNDLLLAEDATAFSHSFLL 240 (413)
T ss_dssp EEEEEEEEECTTCEEEEEEEEEESSSSCEEEEEEEEEEECTTCEEEEEEEECCCTTCEEEEEEEEEECTTCEEEEEEEEC
T ss_pred CCEEEEEEECCCCHHHHHHHCCCCCCCCCEECCEEEEEECCCCEEEEHHHHHHCCCCCCCCEEEEECCCCCCEEEEECCC
T ss_conf 11145653055202211121145544100002205899526642430334442233421220112003454146532000
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 G~~~~r~~~~~~L~G~~a~~~~~g~~~~~~~q~~D~~~~i~H~~~~t~S~~~~k~vl~d~s~~vf~G~i~V~~~A~~t~a 320 (413)
T d1vh4a_ 241 GGAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNGLINVAQHAIKTDG 320 (413)
T ss_dssp CCSEEEEEEEEEECSTTCEEEEEEEECCCTTCEEEEEEEEEECSSSCEEEEEEEEEECTTCEEEEEEEEEECTTCTTEEE
T ss_pred CCCHHHCCCHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHH
T ss_conf 21100110000112000110011023466422433222320155542041343124666640488653035655225665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~q~~~~llls~~a~~~s~P~Lei~~ddv~~~Hgatvg~id~~~lfYL~sRGi~~~eA~~ll~~gF~~~~~~~~~~~~~~~ 400 (413)
T d1vh4a_ 321 QMTNNNLLMGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQIFYLRSRGINQQDAQQMIIYAFAAELTEALRDEGLKQ 400 (413)
T ss_dssp EEEEEEEECSTTCEEEEEEEEEECCSSEEEEEEEEEECCCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHCCCCCCEEEECCEEEEECCCEEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 77665301567744875522899639816994000467898999999976999999999999998999998698299999
Q ss_pred ------------C
Q ss_conf ------------9
Q 000711 482 ------------S 482 (1338)
Q Consensus 482 ------------s 482 (1338)
-
T Consensus 401 ~~~~~i~~~l~~~ 413 (413)
T d1vh4a_ 401 QVLARIGQRLPGG 413 (413)
T ss_dssp HHHHHHHTTSTTC
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999872489
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=100.00 E-value=0 Score=31173.82 Aligned_cols=1 Identities=0% Similarity=-0.127 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~f~~~~~~~p~gDQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA~l~~~~~rp~LVVt~n~~~A~qL~~dL~~~l 80 (413)
T d1t5la1 1 EGRFQLVAPYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIAHNKTLAGQLYSELKEFF 80 (413)
T ss_dssp CCCCCCCCSSCCCTTHHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHHHC
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHC
T ss_conf 98427705889999888999999999865998589967787489999999999739998999489999999999999874
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~v~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~vIVv~~~a~~~~l~~p~~~~~~~l~l 160 (413)
T d1t5la1 81 PHNAVEYFVSYYDYAQPEAYVPQTDTYIEKDAKINDEIDKLRHSATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSL 160 (413)
T ss_dssp TTSEEEEECCGGGTCCCSEEETTTTEEECCCSCCCHHHHHHHHHHHHHHHHCSCEEEEECGGGGSCCCCHHHHHHTSEEE
T ss_pred CCCCEEECCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHEEEEE
T ss_conf 87745432421211442014743443322345677788888766655203567714653000253257857843105898
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~G~~i~~~~l~~~L~~~GY~r~~~V~~~GeFsvRG~IiDIfp~~~~e~PvRIEffgDeIesIr~Fd~~tQrs~~~~~~v 240 (413)
T d1t5la1 161 RVGMEIERNALLRRLVDIQYDRNDIDFRRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEVLGEREHV 240 (413)
T ss_dssp ETTCSCCHHHHHHHHHHTTCEECSSSCCTTEEEECSSEEEECCTTCSSEEEEEEESSSSEEEEEEEETTTCCBCCCCSEE
T ss_pred ECCCHHHHHHHHHHHHHHCCCCCCEEEECCEEEEECCHHHHCCCCCCCCCCCEEEECCHHEEEECCCCCCCCCCCCCCEE
T ss_conf 66862528899999998435103100000205775351642478533564030650301103551135457211243179
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~I~Pa~e~i~~~~~~~~a~~~i~~el~~~~~~~~~~~~~~ea~rl~~~~~~d~e~l~e~~~~~gie~y~~~~~~r~~~~~ 320 (413)
T d1t5la1 241 AIFPASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLALRPPGST 320 (413)
T ss_dssp EECCSSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCCTTGGGGHHHHHTCCTTCC
T ss_pred EEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCC
T ss_conf 96346036269999999999999999999999987785889999998767579999852764444555443204666688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~tLlDY~~~d~l~~iDE~~~~~~q~~~~~~~~~~r~~~l~e~G~~LP~a~dn~pL~~ee~~~~~~~~i~vsatP~~~e~ 400 (413)
T d1t5la1 321 PYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQVLVDHGFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYEL 400 (413)
T ss_dssp CCCHHHHSCTTCEEEEETHHHHHHHHHHHHHHHHHHHHHHHHHTSSCGGGGGSSCCCHHHHHHHCSEEEEEESSCCHHHH
T ss_pred CCHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCCCCHHH
T ss_conf 73244104787089993626569999999988899899888651657556557976889999864987999579970557
Q ss_pred ------------C
Q ss_conf ------------9
Q 000711 482 ------------S 482 (1338)
Q Consensus 482 ------------s 482 (1338)
-
T Consensus 401 ~~~~~~v~q~irp 413 (413)
T d1t5la1 401 EHSPGVVEQIIRP 413 (413)
T ss_dssp HHSSSCEEECCCT
T ss_pred HHCCCEEEEEECC
T ss_conf 7468846886286
|
| >d1hdia_ c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=0 Score=31170.24 Aligned_cols=1 Identities=0% Similarity=-0.194 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~ltl~d~d~~gK~VllRvD~NvPi~~g~I~Dd~RI~~~lpTI~~L~~~gak~Vvl~SH~GRP~~~~~~d~~SL~pva~~ 80 (413)
T d1hdia_ 1 NKLTLDKLNVKGKRVVMRVDFNVPMAAAQITNNARIKAAVPSIKFCLDDGAKSVVLMSHLGRPDGSPMPDKYSLQPVAAE 80 (413)
T ss_dssp CBCBGGGSCCTTCEEEEECCCCCCBSSSSBSCCHHHHHHHHHHHHHHHTTCSEEEEECCCSCCCSSCCTTTSCSHHHHHH
T ss_pred CCCCHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 98754102868998999931587744990897489999999999999879998999537889999977854587999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 L~~~L~~~V~f~~d~~g~~~~~~i~~l~~geilLLENvRF~~~E~~~~~~~~~~~~~~e~~n~~~f~~~La~l~DvyVND 160 (413)
T d1hdia_ 81 LKSALGKAVLFLKDCVGPAVEKACADPAAGSVILLENLRFHVEEEGKGKDASGNKAAGEPAKIKAFRASLSALGDVYVND 160 (413)
T ss_dssp HHHHHTSCCEECSCSSSHHHHHHHHSCCTTEEEECCCGGGSHHHHTEEECTTSCEEECCHHHHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHCCCEEEECCCCHHHHHHHHHCCCCCEEEEECCHHCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 99986886066056513556554320234317980221104211134432011000110243699999876328889953
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 AF~~aHR~haS~~gi~~~~~~~G~LmekEi~~L~~~l~~p~~P~vaIlGGaKvsdKi~vi~~L~~k~d~iiigGgmantf 240 (413)
T d1hdia_ 161 AFGTAHRAHSSMVGVNLPKKAGAFLMKKELNYFAAAAESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTF 240 (413)
T ss_dssp CGGGTTCCCHHHHCCCCSCEEECHHHHHHHHHHHHHHTSCCSSEEEEECCSCSGGGHHHHHHHHTTCSEEEECGGGHHHH
T ss_pred CHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCEEEECCHHHHHH
T ss_conf 42111125762220135642116899999999876540788761699842554338999998875310154035468999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 L~a~~g~~iG~sl~e~~~~~~~~~~~~~~~~~~~~i~lp~d~~~~~~~~~~~~~~~~~~~~~i~~~~~i~DIG~~Ti~~~ 320 (413)
T d1hdia_ 241 LKVLNNMEIGTSLFDEAGKKIVKNLMSKAAANGVKITLPVDFVTADKFDEQAKIGQATVASGIPAGWMGLDCGPKSSAKY 320 (413)
T ss_dssp HHHHHCCCBTTCCCCTTGGGTHHHHHHHHHHHTCEEECCCEEEEESSSSTTCCEEEEETTTCBCTTCEEEEECHHHHHHH
T ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHH
T ss_conf 99715974563340322004677777789871984344541354124566555455442113588764431530236788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~I~~aktI~wNGP~GvfE~~~F~~GT~~i~~~ia~~~~~~a~sivGGGdT~aai~~~g~~~~~~hvSTGGGA~L~~L~ 400 (413)
T d1hdia_ 321 SEAVARAKQIVWNGPVGVFEWEAFAQGTKALMDEVVKATSRGCITIIGGGDTATCCAKWNTEDNVSHVSTGGGASLELLE 400 (413)
T ss_dssp HHHHHHCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHTTCEEEECTTHHHHHHHHTTCTTTSSEECSCHHHHHHHHT
T ss_pred HHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCCCCEEECCHHHHHHHHC
T ss_conf 88761587799988834566761538999999999985148998999377999999974986798479278799999987
Q ss_pred ------------C
Q ss_conf ------------9
Q 000711 482 ------------S 482 (1338)
Q Consensus 482 ------------s 482 (1338)
.
T Consensus 401 G~~LPgi~aL~~~ 413 (413)
T d1hdia_ 401 GKVLPGVDALSNV 413 (413)
T ss_dssp TCCCHHHHTSCBC
T ss_pred CCCCCHHHHHHCC
T ss_conf 9996246352049
|
| >d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Isocitrate/Isopropylmalate dehydrogenase-like superfamily: Isocitrate/Isopropylmalate dehydrogenase-like family: Dimeric isocitrate & isopropylmalate dehydrogenases domain: NADP-dependent isocitrate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=0 Score=31167.30 Aligned_cols=1 Identities=0% Similarity=0.237 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~ki~v~~pIv~l~GDeit~~~~~~i~~~l~~~~~di~~~~~d~G~~~~~~tg~~l~~eaiea~k~~~aiLkGa~~tP~ 80 (413)
T d1lwda_ 1 ADQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPD 80 (413)
T ss_dssp CCCCEECSSCEEEEECCHHHHHHHHHHHHHTTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCC
T ss_pred CCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCC
T ss_conf 99750305777995486379999999999970678886279970788999874996769999999975977788867997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~s~n~~lR~~ldl~an~RP~~~~~~~~~~~~~~~d~VivREnteg~Y~g~e~~~~~~~~~~i~~~~~ 160 (413)
T d1lwda_ 81 EARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPK 160 (413)
T ss_dssp HHHHHHHTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEET
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCEECCCCCCCEEEEECC
T ss_conf 32235444432210001568976387458721002578876788887727752254443503423226766320577405
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ria~~af~~a~~~~~~vt~v~K~nvl~~~~glf~~~~~eva~~~p~~~~~ 240 (413)
T d1lwda_ 161 DGSSAKQWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFD 240 (413)
T ss_dssp TCCCCEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 66542233200256652000001332025678999999997159605775046356600479999999999874003564
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~I~~~~~~vd~~~~~lv~~p~~~Vivt~NlfGDIlSDlaa~l~GglGl~pSanig~~~~~~~fe~~HGsap~~ag~~~ 320 (413)
T d1lwda_ 241 KYKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQ 320 (413)
T ss_dssp HTTCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSSCEEEECCSCCCHHHHHHHH
T ss_pred CCEEEEEHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHH
T ss_conf 23799861455555565228988739997563405676677874389777764324787554333346566000000121
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 iagk~iANP~a~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~G~~T~DlgG~~~~~~~~~~~~~~~sT~ef~d 400 (413)
T d1lwda_ 321 KGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLD 400 (413)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHCTTSCCBTTTBCCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 17765659599999999999973454444579999999999999999779988465887666655555677638999999
Q ss_pred ------------C
Q ss_conf ------------9
Q 000711 482 ------------S 482 (1338)
Q Consensus 482 ------------s 482 (1338)
-
T Consensus 401 aV~~~L~~~l~~~ 413 (413)
T d1lwda_ 401 TIKSNLDRALGRQ 413 (413)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999987529
|
| >d2qgma1 c.150.1.3 (A:33-445) Succinoglycan biosynthesis protein BC3205 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: EreA/ChaN-like superfamily: EreA/ChaN-like family: EreA-like domain: Succinoglycan biosynthesis protein BC3205 species: Bacillus cereus [TaxId: 1396]
Probab=100.00 E-value=0 Score=31167.27 Aligned_cols=1 Identities=0% Similarity=0.172 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~i~~~a~pl~~~d~~~~~~DL~~L~~~v~dariV~LGEatHGt~Ef~~~r~~l~r~Lvee~Gf~~vA~E 80 (413)
T d2qgma1 1 SGQSVQKNIVKSIQSQANPLKTIEPSKPFEDLKPLKKMIGNAQYVGLGENTHGSSEIFTMKFRLVKYLVTEMGFTNFAME 80 (413)
T ss_dssp CCSSHHHHHHHHHHHHCEECCCCCTTSCCGGGHHHHHHHTTCSEEEECCSSSCBHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 98427789999999846558778989876789999986479749998468667079999999999999997599789992
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~d~~~~~~vn~yV~~g~g~~~~~~~~~w~~~e~~~lv~WlR~~N~~~~~~~~v~f~G~D~~~~~~~s~~~v~~yl~~~~p 160 (413)
T d2qgma1 81 EDWGNGLKLNEYIQTGKGNPREFLKLLYPTDEIIAMIEWMKDYNADPSNKKKIQFIGLDLKALDQGSFNKVIDYVRLHRP 160 (413)
T ss_dssp EEHHHHHHHHHHHHHCCSCGGGTSCTTSCBHHHHHHHHHHHHHHHCTTCCSCCEEEEEECSCCCHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCH
T ss_conf 69588999999986388787887787525177999999999970458978842699744465535469999999986196
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~ 240 (413)
T d2qgma1 161 DLLAEVEENYKELSSFTGSIQEYMKLTPKLKEKFKANAERVARLLKDENEQANTEIIPSEYIWAKATASAIEKFTTMLLP 240 (413)
T ss_dssp TSHHHHHHHHHTGGGSCSCHHHHTTSCHHHHHHHHHHHHHHHHHTSCC-----------CHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 78999999974603123478999775176788899999999999997676505432344899999999999999999706
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~RD~~Maenl~~~~~~~~~KiivwAHN~Hi~~~~~~~~~~~~~~G~~L~e~~G~~y~~IG~~~~~G~v~a~~ 320 (413)
T d2qgma1 241 NDYPSIIKLHEQYLADHAMWAQETFGGKTMVWAHNIHIAKGIIDEKLYPYVAGQFLKERLDNNYVTIGSTTTEGNFTLYS 320 (413)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHCSCEEEECCHHHHCSSCSCTTTCSSCHHHHHHHHHGGGEEEEEEEEEEEEEEESC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCEEECCC
T ss_conf 87401377899999999999974789978999554110757565433666589999998488469999873466041257
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~~~~~~~~~~~~~p~~~~s~e~~l~~~~~~~~~ld~r~~~~~~~~~l~~~r~~r~iG~~y~P~~~~y~~~~~~~~fDa 400 (413)
T d2qgma1 321 EYNPSTGGKITTDTIPQDVKSFNYTLGKVPYKMFLLDNRHLKGQAEKWVKAKRPLLSIGGQILPNSSVYFDTSLLEQFDI 400 (413)
T ss_dssp CC-----CCCEEEECCCCTTSHHHHHHHSSCSEEEEEGGGCCHHHHHHHHSEEEEECCCSCC-----CEEEEEHHHHCSE
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCHHCCCEEEECCCCCCCCCCCHHHHCCE
T ss_conf 77875566303678999952699997135877467552004535678883711211310244588764446895997978
Q ss_pred ------------C
Q ss_conf ------------9
Q 000711 482 ------------S 482 (1338)
Q Consensus 482 ------------s 482 (1338)
-
T Consensus 401 li~i~~ttPa~~~ 413 (413)
T d2qgma1 401 IFHIRKTSPSHIK 413 (413)
T ss_dssp EEEEEEECBCCBC
T ss_pred EEEECCCCCCCCC
T ss_conf 9997146703129
|
| >d1zjca1 e.60.1.1 (A:3-415) Aminopeptidase S, AMPS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Thermophilic metalloprotease-like superfamily: Thermophilic metalloprotease-like family: Thermophilic metalloprotease (M29) domain: Aminopeptidase S, AMPS species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=31166.67 Aligned_cols=1 Identities=0% Similarity=-0.792 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~f~~~L~k~A~llV~~~l~vqkGe~VlI~a~~~~~~lvral~~~a~~aGA~pV~v~~~d~~i~r~~~~~~~~e~l~~~e~ 80 (413)
T d1zjca1 1 NYKEKLQQYAELLVKVGMNVQPKQPVFIRSSVETLELTHLIVEEAYHCGASDVRVVYSDPTLKRLKFENESVEHFANHEI 80 (413)
T ss_dssp CHHHHHHHHHHHHHHTTTCCCTTCCEEEEEETTCHHHHHHHHHHHHHTTCCSEEEEEECHHHHHHHHHHSCHHHHHHTSS
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCHHHHCCCCC
T ss_conf 97899999999999983068999989999567439999999999998699648995087899999871899668353202
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~a~i~i~~~~p~~l~~vd~~ki~~~~~a~~~~~k~~~~~~~~~~~~W~i~~~Pt~a~A~~a~~~l 160 (413)
T d1zjca1 81 KSYDVEARMDYVKRGAANLALISEDPDLMDGIDSQKLQAFQQQNARAFKGYMESVQKNQFPWVVAAFPSKAWAKRVYPEL 160 (413)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEECCCTTTTTTSCHHHHHHHHHHHHHHTHHHHHHHHTTCSCEEEEECCCHHHHHHHCTTS
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCCCC
T ss_conf 56679999999865884899726895242037989999999999999899999986476566999568767776645899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~e~~~~~~d~if~a~~lD~~dpv~~w~~~~~~l~~~~~~L~~~~~~~~~~~~~gTDLt~~l~~~~~~~~~~~~~~~~~ 240 (413)
T d1zjca1 161 SVEEAYIKFIDEVFDIVRIDGNDPVENWRQHIANLSVYAQKLQQKNYHALHYVSEGTDLTVGLAKNHIWEDATSYVNGKE 240 (413)
T ss_dssp CHHHHHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEETTEEEEEEECTTBCCBCSEEEGGGTS
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEECCCEEEECCCCCCCCCC
T ss_conf 87999999999999750788051799999999999999999854072479943898407999358737716875236777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~NlP~gEvft~P~~~~~~G~i~~~~~~~~~G~~~~~i~l~f~~G~vv~~~~~~~~~~l~~~l~~d~~a~~~gE~~i 320 (413)
T d1zjca1 241 QAFIANIPTEEVFTAPDRNRVDGYVTNKLPLSYNGTIIDQFKLMFKDGEIIDFSAEKGEAVLKDLINTDEGSRRLGEVAL 320 (413)
T ss_dssp SEEESBSSCCCEEECEEEEEEEEEEECSSCEEETTEEEEEEEEEEETTEEEEEEEEESHHHHHHHHTSSGGGGSEEEEEE
T ss_pred CCCCCCCCCCCEEEEECCCCEEEEEEECEECCCCCEECCCCEEEEECCEEEEEECCCHHHHHHHHHCCCCCCCEEEEEEE
T ss_conf 76648899800686131586137999782526298832481899989999999747659999876404866536767753
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 g~n~~~~~~~~~~~~~~L~DEkgt~H~a~G~~Y~~~~~~~~~~~~~~~~~~G~n~s~~H~D~~i~~~~~~i~gv~~dG~~ 400 (413)
T d1zjca1 321 VPDDSPISNRNTIFYNTLFDENAACHLAIGSAYAFNIQGGTEMTVEEKIASGLNDSNVHVDFMIGSSDLTIYGIFEDGSK 400 (413)
T ss_dssp CCSSSTTGGGCCCCSSHHHHTTTSCEEEEECCCGGGBTTGGGCCHHHHHHHTCCCCSCEEEEECCCTTCEEEEECTTSCE
T ss_pred CCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCHHHCCCCCCCCHHHHHCCCCCCCCEEEEECCCCCCEEEEEEEECCCE
T ss_conf 16886543435442451587489744667756421113665578145401798676457876347871568999818978
Q ss_pred ------------C
Q ss_conf ------------9
Q 000711 482 ------------S 482 (1338)
Q Consensus 482 ------------s 482 (1338)
=
T Consensus 401 ~~I~~~G~f~~~~ 413 (413)
T d1zjca1 401 ELVFENGNWASTF 413 (413)
T ss_dssp EEEEETTEECTTC
T ss_pred EEEEECCEECCCC
T ss_conf 8999899976769
|
| >d1ulva1 a.102.1.5 (A:274-686) Glucodextranase, domain A {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Bacterial glucoamylase C-terminal domain-like domain: Glucodextranase, domain A species: Arthrobacter globiformis [TaxId: 1665]
Probab=100.00 E-value=0 Score=31163.63 Aligned_cols=1 Identities=0% Similarity=-0.393 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~~~~~~~S~l~lk~~~~~~~~GaiiAapt~~~pe~~~~~~n~d~Yry~W~RDaa~~~~al~~~G~~~~a~~~ 80 (413)
T d1ulva1 1 PATSLTGALRTQYDVSLMTVKSHEDKTFPGAFIASLTIPWGQAASAETHREGYHAVWARDMYQSVTALLAAGDEEAAARG 80 (413)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHTTBCSSSTTCBCSCSSCTTGGGSBCSSCCCTTCSBCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 98657889999999999999973468999848875888887666775689871166180599999999986998999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~l~~~~~~~~G~~~~~y~~dg~~~~~~~Q~D~~g~~l~~~~~~~~~~~~~~~~~i~~a~~~l~~~~~~~~~~lWEe~~ 160 (413)
T d1ulva1 81 VEWLFTYQQQPDGHFPQTSRVDGTIGQNGIQLDETAFPILLANQIGRTDAGFYRNELKPAADYLVAAGPKTPQERWEETG 160 (413)
T ss_dssp HHHHHHHTCCTTSCCCSCBCTTSCBCCCCCBTHHHHHHHHHHHHHTCCCHHHHHHTHHHHHHHHHHHCSCBSBCTTSSCC
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 99999985079996056546687767776763038999999999853001678999999999999738898745454678
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 g~~~~T~~~~~~aL~~aa~la~~~gd~~~a~~~~~~A~~i~~~i~~~~~~~~~~~~~~~y~~r~~~~~~~~~~~~~~~~~ 240 (413)
T d1ulva1 161 GYSTSTLASQIAALAAAADIAGKNGDAGSAAVYRATADEWQRSTEKWMFTTNGPVGDGKYYLRISATGNPNDGATRDWGN 240 (413)
T ss_dssp BEEHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTHHHHHEESSCSSTTSCEECSEESSSCTTSCCEEECST
T ss_pred CCEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
T ss_conf 85431189999999999999998398167889999999999999996018655623321011036666654320000123
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~vDas~l~~~~~g~~~~~d~r~~~t~~~i~~~L~~~~~~g~~~~Ry~~D~y~~~~~g~~~~~~~i~t~W~~ 320 (413)
T d1ulva1 241 GAGVHPENAVLDGGFLEFVRLGVKAPADPYVADSLAETDASISQETPGGRMWHRYTYDGYGEKADGSPWDGTGIGRLWPL 320 (413)
T ss_dssp TCCEEEGGGCCBGGGGHHHHTTSSCTTCHHHHHHHHHHHHHHEEEETTEEEECSBTTCCCSCCTTSCCCSSCCCCCBCTH
T ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 45666677765788763112178798887899999999998546778777420024667657788887633112789999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~~~a~~~~g~~~~A~~ll~~l~~~~~~~G~LpEqv~~~~~~~~~~~~~~~~~~sa~PlaWS~A~~i~l~~~l~~g~~~ 400 (413)
T d1ulva1 321 LSGERGEYALANGQDALPYLETMHSAANAGYMIPEQVWDRDEPTSYGHELGRSTGSASPLSWAMAQYVRLAAGVKAGAPV 400 (413)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHTSCTTCCCCSCBBCCSSCCSSCCCBTSBCSSCBSCHHHHHHHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999998648788999999999976687886563016788830025778999888776374789999999998669976
Q ss_pred ------------C
Q ss_conf ------------9
Q 000711 482 ------------S 482 (1338)
Q Consensus 482 ------------s 482 (1338)
-
T Consensus 401 ~~~~~~~~~~~~~ 413 (413)
T d1ulva1 401 ETPQNVAARYAAG 413 (413)
T ss_dssp SSCHHHHHHHTSS
T ss_pred CCCHHHHHHHHCC
T ss_conf 6762899874149
|
| >d1a0tp_ f.4.3.2 (P:) Sucrose-specific porin {Enterobacterium (Salmonella typhimurium) [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Transmembrane beta-barrels superfamily: Porins family: Maltoporin-like domain: Sucrose-specific porin species: Enterobacterium (Salmonella typhimurium) [TaxId: 90371]
Probab=100.00 E-value=0 Score=31161.79 Aligned_cols=1 Identities=0% Similarity=-0.792 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~GfeFhGY~RsG~g~s~~g~~~~~~~~~~~~~~~~g~~gRLGNE~d~y~El~l~~~~~~~~g~~~~~~~~~a~~~~~~~d 80 (413)
T d1a0tp_ 1 SGFEFHGYARSGVIMNDSGASTKSGAYITPAGETGGAIGRLGNQADTYVEMNLEHKQTLDNGATTRFKVMVADGQTSYND 80 (413)
T ss_dssp CCEEEEEEEEEECCEETTSSCCCCCTTCSGGGGGTCCCCCTTCCCSEEEEEEEEEEEECTTSCEEEEEEEEEEEECCCSS
T ss_pred CCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEECCCCCCCC
T ss_conf 95168527785734847898654563216565666565424664351798883457781599599999997115655578
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~q~yve~~nl~~f~~~~~~a~~WaGkR~y~r~~dIhi~D~~y~~~sG~GaGieni~lG~g~~~~~~~~~~ 160 (413)
T d1a0tp_ 81 WTASTSDLNVRQAFVELGNLPTFAGPFKGSTLWAGKRFDRDNFDIHWIDSDVVFLAGTGGGIYDVKWNDGLRSNFSLYGR 160 (413)
T ss_dssp CCGGGCCCEEEEEEEEEESCTTCCGGGTTCEEEEEEEECTTCEEEGGGTEEEEBCEEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred CCCCCCCCHHEEEEHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEECCCCEECEEEEECCCCCEEEEEEEEC
T ss_conf 75666530110303464586434677998639744420366567542310468658857564721037884688999942
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~g~~~~~~~~~~~~~G~~~G~nk~~ 240 (413)
T d1a0tp_ 161 NFGDIDDSSNSVQNYILTMNHFAGPLQMMVSGLRAKDNDERKDSNGNLAKGDAANTGVHALLGLHNDSFYGLRDGSSKTA 240 (413)
T ss_dssp EEECTTCGGGEEEEEEEEEEEEETTEEEEEEEEECTTGGGCBCSSSSBSCSSCCSEEEEEEEEEEEEESTTSSEEEEEEE
T ss_pred CCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCEEEEEEEECCCEECCCCCEEEEH
T ss_conf 56776667875111687531157379999964303773443215654346764465308999996142000358635151
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 lQyg~G~~a~~~~~~~~~~~~~~~~s~Rl~~~G~~~~~~~~~~~~~~~y~~~~d~~~~~~~~~~~s~gvRP~y~~~~~~~ 320 (413)
T d1a0tp_ 241 LLYGHGLGAEVKGIGSDGALRPGADTWRIASYGTTPLSENWSVAPAMLAQRSKDRYADGDSYQWATFNLRLIQAINQNFA 320 (413)
T ss_dssp EEEEEETTCSCSBTTCCTTCCTTCEEEEEEEEEEEESSSSEEEEEEEEEEEEESSSSTTCEEEEEEEEEEEEEESSSSEE
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCEECCCCEEEEEEEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCEE
T ss_conf 62375715577565787862799508999986644135876776668999851667789970799999888589668689
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~E~gy~~~~~~~~g~~~~~~~~~~~~K~TlA~~~~~g~~~~fwsRPeiR~faTY~~w~~~~~~~~~~~~~~~~~~~~~ 400 (413)
T d1a0tp_ 321 LAYEGSYQYMDLKPEGYNDRQAVNGSFYKLTFAPTFKVGSIGDFFSRPEIRFYTSWMDWSKKLNNYASDDALGSDGFNSG 400 (413)
T ss_dssp EEEEEEEEEEEEECTTGGGCCCEEEEEEEEEEEEEEESSCTTCTTCCCEEEEEEEEEEECGGGGGSCSSSSTTBTTBCSS
T ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCHHHCCCCCCCCCCCCCCCCC
T ss_conf 99998886640344675366666783589999763132897876779789999999805412200224565454677888
Q ss_pred ------------C
Q ss_conf ------------9
Q 000711 482 ------------S 482 (1338)
Q Consensus 482 ------------s 482 (1338)
=
T Consensus 401 ~~~~fGvQ~E~Ww 413 (413)
T d1a0tp_ 401 GEWSFGVQMETWF 413 (413)
T ss_dssp CEEEEEEEEEEEC
T ss_pred CCEEEEEEEEEEC
T ss_conf 8789999998769
|
| >d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Amidase signature (AS) enzymes superfamily: Amidase signature (AS) enzymes family: Amidase signature (AS) enzymes domain: Malonamidase E2 species: Bradyrhizobium japonicum [TaxId: 375]
Probab=100.00 E-value=0 Score=31093.91 Aligned_cols=1 Identities=0% Similarity=-1.125 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~ls~~~l~~~~~~~~~s~~~~~~~~~~~i~~~~~~lna~~~~~~~~~~~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~ 80 (412)
T d1ocka_ 1 MISLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYR 80 (412)
T ss_dssp CCCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTCCCCSSSTTTTCEEEEETTBCCSSSCCCTTSGGGT
T ss_pred CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHH
T ss_conf 98789999999869998999999999999976961598174439860766798688879987661778974166486661
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~a~~V~~L~~aGaii~gkt~~~e~~~~~~~~~~np~~~~~~~GgSSgG~aaava~g~~~~a~GsDtgGSiR~PA 160 (412)
T d1ocka_ 81 GWQPRSDAPVVMMLKRAGATIIGKTTTTAFASRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSVIRPA 160 (412)
T ss_dssp TCCCSSCCHHHHHHHHTTCEEEEEECCCGGGSSCCCSCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHHH
T ss_pred CCCCCCEEEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCH
T ss_conf 78875301477652012433000001666502566543334466666777678761111034566557654023441015
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 a~cGi~GlKPT~G~v~~~g~~~~s~~~dt~Gp~arsv~Dl~~~l~~i~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 240 (412)
T d1ocka_ 161 AYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAE 240 (412)
T ss_dssp HHHTCEEEECSTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHHCCGGGSSCCCCSSCEEEECCCGGGCCCCHHHH
T ss_pred HHHCCHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 55302101344100123344443201111223445188999999864288721244776444334432323345106777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~a~~~L~~~G~~v~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 320 (412)
T d1ocka_ 241 QGLQAAIKAAERAGASVQAIDLPEAVHEAWRIHPIIQDFEAHRALAWEFSEHHDEIAPMLRASLDATVGLTPKEYDEARR 320 (412)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHSGGGSCHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 78888888888764023223453102333455541125789887777640242321245544333210122210001124
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~r~~~~~~~~~~f~~~D~ll~Pt~p~~ap~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQiig~~~~D~~lL 400 (412)
T d1ocka_ 321 IGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALASTGDPRYNRLWTLMGNPCVNVPVLKVGGLPIGVQVIARFGNDAHAL 400 (412)
T ss_dssp HHHHHHHHHHHHTTTCSEEEEESSSSSCCBGGGCCCCCCTTTHHHHHHCCCEEEEEEEEETTEEEEEEEEECTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEECCCCCHHHHH
T ss_conf 67899999999982799999689988776300045687577599999789849983668999607688889999899999
Q ss_pred -----------C
Q ss_conf -----------9
Q 000711 482 -----------S 482 (1338)
Q Consensus 482 -----------s 482 (1338)
-
T Consensus 401 ~~A~~~E~alg~ 412 (412)
T d1ocka_ 401 ATAWFLEDALAK 412 (412)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHCC
T ss_conf 999999998583
|
| >d1yzya1 c.146.1.1 (A:1-412) Hypothetical protein HI1011 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: YgbK-like superfamily: YgbK-like family: YgbK-like domain: Hypothetical protein HI1011 species: Haemophilus influenzae [TaxId: 727]
Probab=100.00 E-value=0 Score=31092.52 Aligned_cols=1 Identities=0% Similarity=-2.154 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 i~iIADDlTGA~dt~~~~~~~G~~t~~~~~~~~~~~~~~~dvv~i~t~SR~l~~~eA~~~v~~~~~~l~~~~~~~~~~Kv 80 (412)
T d1yzya1 1 LGVIADDFTGASDIASFLVENGLSTVQMNGVPTQSLNSKVDAIVISLKSRSNPVNEAIEQSLRAYQWLKENGCTQFYFKY 80 (412)
T ss_dssp CEEEESSHHHHHHHHHHHHTTTCCEEEEESCCSSCCCSCCSEEEEECCCSSSCHHHHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 96895273528999999998799099971788500057899899985778999999999999999999863897158999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~s~~DStlRGnig~Ei~a~~~~~~~~~~~v~PA~P~~gR~t~~G~~~v~g~pl~~t~~a~dP~tP~~~s~l~~ll~~qs~ 160 (412)
T d1yzya1 81 CSTFDSTAKGNIGPVTDALLDELNEDFTVITPALPVNGRTIFNGYLFVGDVLLSESGMKNHPITPMVDANLMRLMDAQAK 160 (412)
T ss_dssp CTTCCCCTTCTHHHHHHHHHHHHTCCCEEECCCBGGGTEEEETTEEEETTEEGGGSGGGGCSSSCCCCCBHHHHHHHHCS
T ss_pred EECCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCEEEECCEECCCCCCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 73133777678589999999763997699946756577699998999898875676100288989775027777555237
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~v~~i~~~~v~~~~~~~~~~l~~~~~~~~~~vv~Da~t~~dL~~ia~a~~~~~~~~GsaGla~~l~~~~~~~~~~~~~~ 240 (412)
T d1yzya1 161 GKTGLVAYADVIKGASRVQECFAELKAQGYRYAVVDAVDNSQLEVLAEAVADFKLVTGGSGLGAYMAARLSGGKKGTNAF 240 (412)
T ss_dssp SCEEEECHHHHTTCHHHHHHHHHHHHHTTCSEEEECBSSTHHHHHHHHHTTTCSEEEESHHHHHHHHHHHHTSCCGGGCC
T ss_pred CCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCCCCCC
T ss_conf 85354219988645067999999876179866998369889999999973288079954407778887512466654345
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~Lvv~GS~s~~T~~Ql~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 320 (412)
T d1yzya1 241 TPTKGKTVVLSGSCSVMTNKQVEKYREKAPHFQLDVEQAIHNENYIEQLYQWVIANLDSEFAPMVYATVPPDALKAIQHQ 320 (412)
T ss_dssp CCCSCCEEEEECCCSHHHHHHHHHHTTTSCEEECCHHHHHHCTTHHHHHHHHHHTTTTSSSCCEEECCCCHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEECHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
T ss_conf 78888679998267488999999998509859963899617817999999999998736997588843764555566543
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~~~~~~~i~~~l~~~~~~l~~~~~~~lv~tGGdTa~av~~~Lg~~~l~~~~ei~pGvp~~~~~~~gl~ivtK~G~fG~ 400 (412)
T d1yzya1 321 FGVDQASHAIENTFAKLAAKLKQYGVTNFITAGGETSSIVVQELGFTGFHIGKQIAPGVPWLKAVEEDIFLALKSGNFGK 400 (412)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEESHHHHHHHHHHHTCCEEEEEEEEETTEEEEEESSSSCEEEEECTTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCEEEEEECCCCCC
T ss_conf 01677999999999999999875587869992639999999975998666757426982079766998079997898898
Q ss_pred -----------C
Q ss_conf -----------9
Q 000711 482 -----------S 482 (1338)
Q Consensus 482 -----------s 482 (1338)
-
T Consensus 401 ~D~~~~a~~~~~ 412 (412)
T d1yzya1 401 EDFFEYAQGMFL 412 (412)
T ss_dssp TTHHHHHHHTTC
T ss_pred HHHHHHHHHHHC
T ss_conf 569999999759
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=100.00 E-value=0 Score=31092.44 Aligned_cols=1 Identities=0% Similarity=0.504 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
.
T Consensus 1 ~~~~~~~~~~~~~d~i~~~~~~~~~d~~~~kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr~ 80 (412)
T d1yaaa_ 1 SATLFNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTS 80 (412)
T ss_dssp CTTTTTTCCCCCCCTTHHHHHHHHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHH
T ss_pred CCCHHHCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 94734458747998699999998467898968830677748889988868999999999728654777899877899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~~~~~~~g~~~~~~~~~~~~~~~ 160 (412)
T d1yaaa_ 81 NAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKS 160 (412)
T ss_dssp HHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTE
T ss_pred HHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHCCCCEECCCCCCCCCCC
T ss_conf 99999723447665666526871442046799999987503899877246435740679999859910105633334344
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~ 240 (412)
T d1yaaa_ 161 LDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKL 240 (412)
T ss_dssp ECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHT
T ss_pred CCCHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCEEEECCCCCCCCCHHHHHHHHHCC
T ss_conf 21101000124578751799944899985445899999999866114887974520010000588656524432223212
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~ 320 (412)
T d1yaaa_ 241 STVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWH 320 (412)
T ss_dssp TTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHH
T ss_conf 46887599982577645676760799975056666788888888889999987736797688999999706847789999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~~~~gG~F~~~~ls~e~~~~L~~e~~V~~~~g~Ris~~g~~~~~i~~l 400 (412)
T d1yaaa_ 321 KDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTPQMVKRLEETHAVYLVASGRASIAGLNQGNVEYV 400 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTSEEEGGGCCTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEECCCCHHHHHHHHHHCCEEECCCCEEEECCCCHHHHHHH
T ss_conf 89999999999999999999997289888753689952798229699999999996788878988798515988889999
Q ss_pred -----------C
Q ss_conf -----------9
Q 000711 482 -----------S 482 (1338)
Q Consensus 482 -----------s 482 (1338)
+
T Consensus 401 ~~ai~~v~k~~~ 412 (412)
T d1yaaa_ 401 AKAIDEVVRFYA 412 (412)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHHC
T ss_conf 999999998509
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=0 Score=31090.56 Aligned_cols=1 Identities=0% Similarity=-0.959 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~~~~~~pir~~~~~~~~~~~~~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LRea 80 (412)
T d1bw0a_ 1 WDVSMSNHAGLVFNPIRTVSDNAKPSPSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREA 80 (412)
T ss_dssp CCCCCCHHHHTCCCHHHHHHHTCCCCCSCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHH
T ss_pred CCCCHHHCCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf 98781234568852899999856777799984788697899999852129999999998628777788998688999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ia~~~~~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~ 160 (412)
T d1bw0a_ 81 VATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDW 160 (412)
T ss_dssp HHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTT
T ss_pred HHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 99999975475435687888886999446222025666543114432046411330144455405864222332223333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~l~~~~~~~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~ 240 (412)
T d1bw0a_ 161 EADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTV 240 (412)
T ss_dssp EECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSC
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEECHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 12467887653111222222334333332201443023211222377666520217875447888764100001223433
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 320 (412)
T d1bw0a_ 241 PRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAM 320 (412)
T ss_dssp CEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 11311555755756877743201240433003555554034553347750343202222333222333322110278999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~~~l~~~~g~~~~~p~gg~~l~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~iRis~~~~~e~l~eal 400 (412)
T d1bw0a_ 321 YLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTRPVEVYREAV 400 (412)
T ss_dssp HHHHHHTTSTTEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHH
T ss_pred HHHHHHHHHCCCEECCCCCCEEEEEECCHHHCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEECCCHHHHHHHH
T ss_conf 99999987349254378971499995782343788899999999998699999966214899939999738999999999
Q ss_pred -----------C
Q ss_conf -----------9
Q 000711 482 -----------S 482 (1338)
Q Consensus 482 -----------s 482 (1338)
+
T Consensus 401 ~Rl~~~l~~~~~ 412 (412)
T d1bw0a_ 401 ERIKAFCQRHAA 412 (412)
T ss_dssp HHHHHHHHHHBC
T ss_pred HHHHHHHHHCCC
T ss_conf 999999986179
|
| >d1rxxa_ d.126.1.4 (A:) Arginine deiminase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pentein, beta/alpha-propeller superfamily: Pentein family: Arginine deiminase domain: Arginine deiminase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=0 Score=31089.83 Aligned_cols=1 Identities=0% Similarity=-0.194 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~v~sE~g~Lk~Viv~~Pg~e~~~l~p~~~~~~lf~~~~~~~~a~~eh~~f~~~L~~~Gv~V~~l~~~l~e~~~~~~~ 80 (412)
T d1rxxa_ 1 TKLGVHSEAGKLRKVMVCSPGLAHQRLTPSNCDELLFDDVIWVNQAKRDHFDFVTKMRERGIDVLEMHNLLTETIQNPEA 80 (412)
T ss_dssp CCSEECCSSSCEEEEEECCCCHHHHTCCTTTTGGGTCSCCCCHHHHHHHHHHHHHHHHTTTCEEEEHHHHHHHHTTSHHH
T ss_pred CCCCCCCCCCCCEEEEECCCCHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCHHH
T ss_conf 97753777100007896698388773690015664367788999999999999999997798899705768877349588
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plpn~~F~R 160 (412)
T d1rxxa_ 81 LKWILDRKITADSVGLGLTSELRSWLESLEPRKLAEYLIGGVAADDLPASEGANILKMYREYLGHSSFLLPPLPNTQFTR 160 (412)
T ss_dssp HHHHHHHHSCHHHHCTTTHHHHHHHHHTSCHHHHHHHHHHCEEGGGSCSCHHHHHHHHHHHHSCCCCEEECCCGGGGCTT
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHEECC
T ss_conf 99999875032334655899999998708989999998626421003444332112211000356533578862121315
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 D~~~~i~~gvii~~m~~~~R~~E~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~EGGDvl~~g~~~l~~g~s~RTn 240 (412)
T d1rxxa_ 161 DTTCWIYGGVTLNPMYWPARRQETLLTTAIYKFHPEFANAEFEIWYGDPDKDHGSSTLEGGDVMPIGNGVVLIGMGERSS 240 (412)
T ss_dssp TTEEECSSEEEECCCSSGGGHHHHHHHHHHHHHCHHHHTSCCEEEECCTTSCCTTCCCCGGGEEEEETTEEEEEESSSSC
T ss_pred CCCCEECCCEEECCCCCHHHCCCHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEECCCCC
T ss_conf 77534669789668997365436799999998580220576310147655547766042560899679689999431050
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~gi~~L~~~l~~~~~~~~v~~~~~p~~~~~~HLDt~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (412)
T d1rxxa_ 241 RQAIGQVAQSLFAKGAAERVIVAGLPKSRAAMHLDTVFSFCDRDLVTVFPEVVKEIVPFSLRPDPSSPYGMNIRREEKTF 320 (412)
T ss_dssp HHHHHHHHHHHHHTTSCSEEEEEECCC--CCCCHHHHEEEEETTEEEECHHHHTTCEEEEEEECTTSTTSEEEEECSSCH
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEECCCEEEECCCCEEEEEHHHCCCCCCEEEECCCCCCCCCEEECCCCCH
T ss_conf 99999999986642806775502678765420025427751798599831242754430442156655551010254317
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~l~~~l~~~~~~~i~~~~d~~~~~~e~~~~~~N~L~l~p~~Vi~~~~~~~~~~~L~~~Gi~vi~v~~~el~~~gGg~h 400 (412)
T d1rxxa_ 321 LEVVAESLGLKKLRVVETGGNSFAAEREQWDDGNNVVCLEPGVVVGYDRNTYTNTLLRKAGVEVITISASELGRGRGGGH 400 (412)
T ss_dssp HHHHHHHTTCSCCEEEECCCSCC--CCSSCCCCCCCEEEETTEEEEETTCHHHHHHHHHTTCEEEEECCTTTTSSSCCTT
T ss_pred HHHHHHHHCCCCCEEECCCCCHHHHHHHHHHCCCEEEEECCCEEEEECCCHHHHHHHHHCCCEEEEECHHHHHCCCCCCE
T ss_conf 89999971898707955798525555666406520899679989984889999999997899899966567413798867
Q ss_pred -----------C
Q ss_conf -----------9
Q 000711 482 -----------S 482 (1338)
Q Consensus 482 -----------s 482 (1338)
-
T Consensus 401 C~T~pl~Re~i~ 412 (412)
T d1rxxa_ 401 CMTCPIVRDPID 412 (412)
T ss_dssp TTCEEEEECCCC
T ss_pred ECCCCCCCCCCC
T ss_conf 887034627999
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=100.00 E-value=0 Score=31088.72 Aligned_cols=1 Identities=0% Similarity=0.237 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
.
T Consensus 1 ~~~s~~~~~~~~~~~~i~~l~~~~~~d~~~~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~~~Y~p~~G~p~lr 80 (412)
T d1ajsa_ 1 APPSVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFR 80 (412)
T ss_dssp CCCCTTTTCCCCCCCHHHHHHHHHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHH
T ss_pred CCCCHHHHCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 99584440876899769999999836899996884178875888999886899999999973787688889977789999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 eaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~G~~~v~~~~~ 160 (412)
T d1ajsa_ 81 TCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRY 160 (412)
T ss_dssp HHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEEC
T ss_pred HHHHHHHHCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCEEEEEECC
T ss_conf 99999985157843245662230365305678899999988764047998989994786331689999859927874223
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~ 240 (412)
T d1ajsa_ 161 WDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAI 240 (412)
T ss_dssp EETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHH
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECHHHHHHHCCCCCCCHHHH
T ss_conf 36233554378999999725677389995589998687899999999999986389789830765654059865651566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (412)
T d1ajsa_ 241 RYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWT 320 (412)
T ss_dssp HHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHH
T ss_conf 65444124321234663223577777345445616788999999999998631535641689999999853888899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~~~~~~~l~~~r~~l~~~L~~~~~~~~~~~i~~~~G~F~~~~ls~~~v~~L~~e~gV~~vpg~Ri~~ag~~~~~i~~~ 400 (412)
T d1ajsa_ 321 GNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNPKQVEYLINQKHIYLLPSGRINMCGLTTKNLDYV 400 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCCHHHHHHHHHTTCEECCTTSEEEGGGCCTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECCCCHHHHHHHHHHCCEEEECCCEEEECCCCHHHHHHH
T ss_conf 99999999999999999999998489887036658975798459899999999985999981898688336988889999
Q ss_pred -----------C
Q ss_conf -----------9
Q 000711 482 -----------S 482 (1338)
Q Consensus 482 -----------s 482 (1338)
-
T Consensus 401 a~aI~~av~~~~ 412 (412)
T d1ajsa_ 401 ATSIHEAVTKIQ 412 (412)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHCC
T ss_conf 999999999639
|
| >d1ufaa2 c.6.2.4 (A:1-412) Hypothetical protein TT1467, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: 7-stranded beta/alpha barrel superfamily: Glycoside hydrolase/deacetylase family: AmyC N-terminal domain-like domain: Hypothetical protein TT1467, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=31088.93 Aligned_cols=1 Identities=0% Similarity=-1.490 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~lalvlH~HqP~vr~~~~~~~~e~w~~~a~~e~YlPll~~~~~l~~~~~~~k~t~~lsP~LleqL~D~~l~~~f~~~l 80 (412)
T d1ufaa2 1 MARFALVLHAHLPYVRAHGMWPFGEETLYEAMAETYLPLIRVLERLRAEGVEAPFTLGITPILAEQLADARIKEGFWAYA 80 (412)
T ss_dssp CEEEEEEEEECCCCCTTSCSTTTSHHHHHHHHHHTHHHHHHHHHHHHHTTCCCCEEEEECHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHCHHHHHHHHHHH
T ss_conf 96379998257876568987874245999999998888999999998428983399997789999850878888889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~r~L~~~G~vEl~~~~y~H~ilpll~~~~~~~~ 160 (412)
T d1ufaa2 81 KDRLERAQGDYQRYRGTALEASARHQVAFWELTLDHFQRLSGDLVAAFRKAEEGGQVELITSNATHGYSPLLGYDEALWA 160 (412)
T ss_dssp HHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTSEEEEEECTTCBCGGGCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHCCCCHHHHHH
T ss_conf 99998750556532340667888888999999999999965458999999997598688835412333321796799999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 Qi~~~~~~~~~~fG~~P~G~W~~E~a~s~~~l~~~~~~g~~~~~~~gl~~iL~~~Gi~y~~~d~~~l~~~~~~~~~~~~~ 240 (412)
T d1ufaa2 161 QIKTGVSTYRRHFAKDPTGFWLPEMAYRPKGPWKPPVEGPPEGVRPGVDELLMRAGIRYTFVDAHLVQGGEPLSPYGEAA 240 (412)
T ss_dssp HHHHHHHHHHHHHSSCCCBEECGGGCBCCSEEECCSSSSSCCEEECCHHHHHHHTTCCEEEECHHHHHCSCCCCC-----
T ss_pred HHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHCCCCEEEECHHHHHCCCCCCCCCCCC
T ss_conf 99999999999759998867674222044113433321442102452889999739978997749985078766555556
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~y~~~~~~~~v~~ffRD~~lSd~I~~~~~Gf~~~~~~~e~a~~d~~~~l~~~r~t~~~~~~~~~~~~Dgen 320 (412)
T d1ufaa2 241 LGPVESQEATYHVHELESGLRVLARNPETTLQVWSADYGYPGEGLYREFHRKDPLSGLHHWRVTHRKADLAEKAPYDPEA 320 (412)
T ss_dssp ---CCCCGGGGSCEECTTSCEEEEBCHHHHHHHHCTTTSGGGSTTSBCSSCCCTTTCCCCEECCCSSCCGGGCEECCHHH
T ss_pred CCCCCCCCCCEEEECCCCEEEEEECCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf 67533345650330489738999668777546332326988765356665221334489987113467855361068899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 awe~~~~~a~~Fl~~l~~~~~~~~~~ivv~~~D~ElFGhww~eg~~fL~~l~~~l~~~~~i~~tT~se~l~~p~~~v~lp 400 (412)
T d1ufaa2 321 AFAKTEEHARHFVGLLERLAGRHPEGVILSPYDAELFGHWWYEGVAWLEAVLRLLAQNPKVRPVTAREAVQGPAVRTALP 400 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGBTTTBTTHHHHHHHHHHHHHTCSSEEECCHHHHTCSCCEECCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHCCCCEEECC
T ss_conf 99998977999999999875058887589445588604024310999999999863189839976999982889714258
Q ss_pred -----------C
Q ss_conf -----------9
Q 000711 482 -----------S 482 (1338)
Q Consensus 482 -----------s 482 (1338)
.
T Consensus 401 ~sSWg~gg~~~v 412 (412)
T d1ufaa2 401 EGSWGRGGDHRV 412 (412)
T ss_dssp SBCSSGGGSSTT
T ss_pred CCCCCCCCCCCC
T ss_conf 988767898889
|
| >d1t3ca_ d.92.1.7 (A:) Botulinum neurotoxin {Clostridium botulinum, serotype E [TaxId: 1491]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Clostridium neurotoxins, catalytic domain
domain: Botulinum neurotoxin
species: Clostridium botulinum, serotype E [TaxId: 1491]
Probab=100.00 E-value=0 Score=31021.64 Aligned_cols=1 Identities=0% Similarity=-0.494 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~InnFNyndPVnn~~I~~~r~~~~~~~~KAFkI~~nIWViPER~~~~t~p~d~~pp~~~~~~d~~yYDpnyLsTD~EKD 80 (411)
T d1t3ca_ 1 PKINSFNYNDPVNDRTILYIKPGGCQEFYKSFNIMKNIWIIPERNVIGTTPQDFHPPTSLKNGDSSYYDPNYLQSDEEKD 80 (411)
T ss_dssp CCCCCCCTTSCCCSSSEEEEECTTCSSCEEEEEEETTEEEEEEECCTTCCGGGGSCSCSTTTTSSCCBCTTTTCSHHHHH
T ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHH
T ss_conf 97666667898899728999448899712435620776875111247778212489732346887513753145621788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~FLk~iIKLf~RINs~~~G~~LL~~Is~aiPf~G~~~t~~~ef~~~~~~~~n~~~s~~~~~~~~~NlvIfGPg~nI~en~ 160 (411)
T d1t3ca_ 81 RFLKIVTKIFNRINNNLSGGILLEELSKANPYLGNDNTPDNQFHIGDASAVEIKFSNGSQDILLPNVIIMGAEPDLFETN 160 (411)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHTCCCCSCCTTSCTTSCCCCTTTCEEEECTTSCEEEECCSEEEEECCSBTTCCE
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCEEEEECCCCCHHHEEEEEEEECCCCCCCCCC
T ss_conf 99999999999863745799999999736875789999853311355430356336885201310269987885425665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~n~~~s~nGfGt~~~i~F~P~~t~~f~~~~~~~F~~DPAl~L~heLIhsLh~LYGIk~i~~~~~i~~~~~~~~ 240 (411)
T d1t3ca_ 161 SSNISLRNNYMPSNHGFGSIAIVTFSPEYSFRFNDNSMNEFIQDPALTLMHQLIHSLHGLYGAKGITTKYTITQKQNPLI 240 (411)
T ss_dssp EEECCCGGGCCGGGTTSCCCEEEECCTTEEEEEECTTSCEEECCHHHHHHHHHHHHHHHHTTCCTTTTTCEECTTTTTCC
T ss_pred CEEEEECCCCCHHHCCCCEEEEEEECCCEEEEECCCCCCCEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 03787405776322476504799976634786136777714248899999999999987618667887642101000556
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~v~~eelltfGG~D~~~I~t~~~~~~~~~~l~~f~~ia~~l~~i~~~n~~~n~yK~~~~~Ky~~~~d~~g~~~vN~ 320 (411)
T d1t3ca_ 241 TNIRGTNIEEFLTFGGTDLNIITSAQSNDIYTNLLADYKKIASKLSKVQVSNPLLNPYKDVFEAKYGLDKDASGIYSVNI 320 (411)
T ss_dssp SCTTCEEHHHHHHHCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHTSCCSCGGGHHHHHHHHHHTTEEECTTSCEEECH
T ss_pred HCCCCCCCEEEEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEH
T ss_conf 41477554000300687800048711677999999999999999888627884178999999998577657887288548
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~kF~~~y~~l~~fTE~~~~~~f~v~~r~~Y~~~y~~~~~~nlldd~iYti~eGFNi~nl~~n~~GQN~~~N~~~~~~i~~ 400 (411)
T d1t3ca_ 321 NKFNDIFKKLYSFTEFDLATKFQVKCRQTYIGQYKYFKLSNLLNDSIYNISEGYNINNLKVNFRGQNANLNPRIITPITG 400 (411)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHTCCCCSCSCSCCCEEEESCTTCTTTCBTTTBTCCGGGGGGGGGGBTTTSGGGEECCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCC
T ss_conf 99999999986223344668886887776886357632255467653221467433432001367653238465346785
Q ss_pred ----------C
Q ss_conf ----------9
Q 000711 482 ----------S 482 (1338)
Q Consensus 482 ----------s 482 (1338)
|
T Consensus 401 ~glv~~~~~~C 411 (411)
T d1t3ca_ 401 RGLVKKIIRFC 411 (411)
T ss_dssp TTHHHHHSSCC
T ss_pred CHHHHHHHHCC
T ss_conf 20588776339
|
| >d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: N-acylglucosamine (NAG) epimerase domain: Putative NAG isomerase YihS species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=31016.88 Aligned_cols=1 Identities=0% Similarity=0.005 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~r~wL~~~~~~l~~~~~~~~~~gGF~~l~~dG~~~~~~~k~~~~~aR~~~~fs~a~~~g~~~~~~~A~~g~~f 80 (411)
T d2afaa1 1 KWFNTLSHNRWLEQETDRIFNFGKNAVVPTGFGWLGNKGQIKEEMGTHLWITARMLHVYSVAASMGRPGAYDLVDHGIKA 80 (411)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHGGGEETTEECCBCTTSCBCGGGCEEHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 97687777899999999999864617789972346899897888772147768999999999975897799999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 L~~~~~d~~~Gg~~~~~~~~~~~d~~k~~Y~~AF~l~ala~~~~~g~~~~~~~a~~~~~~l~~~~~~~~~G~~~~~~~~~ 160 (411)
T d2afaa1 81 MNGALRDKKYGGWYACVNDQGVVDASKQGYQHFFALLGAASAVTTGHPEARKLLDYTIEVIEKYFWSEEEQMCLESWDEA 160 (411)
T ss_dssp TTTTTBCTTTSSBCSEECSSSEEECCEEHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHTEETTTTEECCEECTT
T ss_pred HHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCC
T ss_conf 99856767998489862699986532104889999999999988588889999999999999996075689743220555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~n~~mhl~eA~~~l~~at~d~~~~~~a~~~~~~~~~~~~~~~~~~l~E~f~~dw~~~~~~~~~~~~~~~~~ 240 (411)
T d2afaa1 161 FSQTEDYRGGNANMHAVEAFLIVYDVTHDKKWLDRALRIASVIIHDVARNGDYRVNEHFDSQWNPIRDYNKDNPAHRFRA 240 (411)
T ss_dssp SCCBCSCEEHHHHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHHCCCCCGGGTTCCCCEECTTCCBCTTTTTTCTTCCTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHCCCCCCCCCC
T ss_conf 67754424467448999999999884288999999999999888765156678411112666541443301264324564
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~pGH~iE~aWlll~~~~~~~~~~~~~~~~~l~~A~~l~~~~~~~g~d~d~~gg~~~~~~~~g~~~~~~k~~W~qaEa 320 (411)
T d2afaa1 241 YGGTPGHWIEWGRLMLHLHAALEARFETPPAWLLEDAKGLFHATIRDAWAPDGADGFVYSVDWDGKPIVRERVRWPIVEA 320 (411)
T ss_dssp SSBCHHHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHBSCSSSSSBCSCBCTTSCBSSCCEEHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHH
T ss_conf 33474138899999999999973134567299999999999999985726578980584015899967777455599999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 i~a~l~ly~~tgd~~yl~~a~~~~~~~~~~f~D~~~G~W~~~l~~~g~p~~~~~~g~~~~yH~~~a~~~~~~~~~~~~~~ 400 (411)
T d2afaa1 321 MGTAYALYTLTDDSQYEEWYQKWWDYCIKYLMDYENGSWWQELDADNKVTTKVWDGKQDIYHLLHCLVIPRLPLAPGLAP 400 (411)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTBCTTTSSBCSEECTTSCBCC----CCCCCTTTHHHHTGGGSCSSSCHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHH
T ss_conf 99999999866989999999999999998687999983464589997998888999987206999998615889974218
Q ss_pred ----------C
Q ss_conf ----------9
Q 000711 482 ----------S 482 (1338)
Q Consensus 482 ----------s 482 (1338)
.
T Consensus 401 ~~~~~~~~~~~ 411 (411)
T d2afaa1 401 AVAAGLLDINA 411 (411)
T ss_dssp HHHTTCTTTTC
T ss_pred HHHCCCCCCCC
T ss_conf 88701346689
|
| >d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Formin homology 2 domain (FH2 domain) superfamily: Formin homology 2 domain (FH2 domain) family: Formin homology 2 domain (FH2 domain) domain: Bni1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=31013.08 Aligned_cols=1 Identities=0% Similarity=-0.426 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~PkP~~klK~l~W~ki~~~~~tiW~~i~~~~~~~~~~~~~~~~~le~~F~~k~~~~~~~~~~~~~~~~~lLd~kr~qni 80 (411)
T d1ux5a_ 1 KYPRPHKKLKQLHWEKLDCTDNSIWGTGKAEKFADDLYEKGVLADLEKAFAAREIKSLASKRKEDLQKITFLSRDISQQF 80 (411)
T ss_dssp CCCCCSSCBCCCCCCCCSSCCSSSCCSSHHHHHHHHHHHTTHHHHHHHHTBSSCCHHHHHHHHHTTTSBCCSCHHHHHHH
T ss_pred CCCCCCCCCCCCCCEECCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 96989999989776159998988200204410036788663099999986447777776666666662001767899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~I~L~~~~~~s~~~i~~ai~~~d~~~l~~~~l~~ll~~~~~~~~~~~~l~~~lPt~eE~~~l~~~~~~~~~~~d~~~L~~ 160 (411)
T d1ux5a_ 81 GINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEFLSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEKDPNDLQR 160 (411)
T ss_dssp HHHTGGGTTSCHHHHHHHHHTTTHHHHTCHHHHHHTTCHHHHCCCHHHHHHTGGGCCCCTTCCCGGGCCCCSSCSTTBCH
T ss_pred HHHHHHCCCCCHHHHHHHHHHCCHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHCCH
T ss_conf 89998706999999999998368542487899999830210134799999817993789999999851445478454387
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~Eqf~~~l~~~~i~~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~lN~g~~~A~GF 240 (411)
T d1ux5a_ 161 ADQIYLQLMVNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTSKQAQGF 240 (411)
T ss_dssp HHHHHHHTTTTTTTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSCGGGCCSCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 99999999862334499999999999999999999999999999999999957679999999999860625899871235
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 kL~sL~kL~d~Ks~d~~~tLL~yiv~~~~~~~p~l~~~~~el~~v~~a~~~~~~~l~~~~~~L~~~l~~i~~~~~~~~~~ 320 (411)
T d1ux5a_ 241 KLSTLQRLTFIKDTTNSMTFLNYVEKIVRLNYPSFNDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLS 320 (411)
T ss_dssp CGGGGGGSSSCBCTTSCSBHHHHHHHHHHHHCGGGGGHHHHTHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTT
T ss_pred EHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 23898876521179998018999999999869075332877888998861899999999999999999999999862025
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~~~~~~d~f~~~~~~fl~~~~~~~~~l~~~~~~~~~~~~~~~~yfGEd~~~~~~~~~fF~~~~~F~~~~~~a~~en~~ 400 (411)
T d1ux5a_ 321 DSSKFHPLDKVLIKTLPVLPEARKKGDLLEDEVKLTIMEFESLMHTYGEDSGDKFAKISFFKKFADFINEYKKAQAQNLA 400 (411)
T ss_dssp CTTSSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 40002511169999999999999999999999999999999999983899888789999999999999999999999999
Q ss_pred ----------C
Q ss_conf ----------9
Q 000711 482 ----------S 482 (1338)
Q Consensus 482 ----------s 482 (1338)
-
T Consensus 401 ~~e~e~~~~k~ 411 (411)
T d1ux5a_ 401 AEEEERLYIKH 411 (411)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
T ss_conf 99999987209
|
| >d1izoa_ a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cytochrome p450 152a1 (Bs-beta) species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=31007.61 Aligned_cols=1 Identities=0% Similarity=-0.493 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 p~~~~~~~~l~~~~~~~~f~~~~~~kyg~~if~~~~~g~~~vvv~~pe~i~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~ 80 (411)
T d1izoa_ 1 PHDKSLDNSLTLLKEGYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAAKVFYDTDRFQRQNALPKRVQKSLFGVNAIQ 80 (411)
T ss_dssp CBCCCTTHHHHHHHHGGGHHHHHHHHTTSSEEEEEETTEEEEEECSHHHHHHHTCTTTEECTTCSCHHHHTTTTCTTCGG
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECHHHHHHHHCCCCCEECCCCCHHHHHHHCCCCCCC
T ss_conf 98997014999997799999999999799769999889528999799999999769997113777287777644899645
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~dg~~h~~~R~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~l~~~v~~~~~g~~~~~~~~~~~~~~ 160 (411)
T d1izoa_ 81 GMDGSAHIHRKMLFLSLMTPPHQKRLAELMTEEWKAAVTRWEKADEVVLFEEAKEILCRVACYWAGVPLKETEVKERADD 160 (411)
T ss_dssp GCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHTTSSEEEHHHHHHHHHHHHHHHHHTCCCCTTTHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 77808999999999873199999999999999999999985425751299999999998888874887647999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~k~~~a~~~~~~~~~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~ag~~ 240 (411)
T d1izoa_ 161 FIDMVDAFGAVGPRHWKGRRARPRAEEWIEVMIEDARAGLLKTTSGTALHEMAFHTQEDGSQLDSRMAAIELINVLRPIV 240 (411)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCTTSHHHHHHHCBCTTSCBCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 99999876321310399999999999999999998621224586322899999986751775311013456665320332
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 tts~~l~~~l~~L~~~P~vq~kl~~e~~~~l~a~i~E~lRl~p~~~~~~r~~~~d~~i~g~~ipkgt~V~~~~~~~~~dp 320 (411)
T d1izoa_ 241 AISYFLVFSALALHEHPKYKEWLRSGNSREREMFVQEVRRYYPFGPFLGALVKKDFVWNNCEFKKGTSVLLDLYGTNHDP 320 (411)
T ss_dssp THHHHHHHHHHHHHHSTHHHHHHHTCCHHHHHHHHHHHHHHSCCCCEEEEEECSCEEETTEEECTTCEEEEEHHHHHTCT
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHCCC
T ss_conf 30288999999987310123221001330499999999986503322344333334431043464221101355530442
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~~~p~~F~PeR~~~~~~~~~~~~pFg~G~~~~~r~C~G~~~A~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~p~ 400 (411)
T d1izoa_ 321 RLWDHPDEFRPERFAEREENLFDMIPQGGGHAEKGHRCPGEGITIEVMKASLDFLVHQIEYDVPEQSLHYSLARMPSLPE 400 (411)
T ss_dssp TTSSSTTSCCGGGGTTCCCCSSSCCTTCSSCTTSSSCCTTHHHHHHHHHHHHHHHHHTEEEECCSCCCCCCSSSSSCCCT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCCCCCCCC
T ss_conf 00899562186535899999776479899899988088439999999999999999826898179986887255377568
Q ss_pred ----------C
Q ss_conf ----------9
Q 000711 482 ----------S 482 (1338)
Q Consensus 482 ----------s 482 (1338)
-
T Consensus 401 ~~~~~~~~~Rr 411 (411)
T d1izoa_ 401 SGFVMSGIRRK 411 (411)
T ss_dssp TCCEEEEEEEC
T ss_pred CCCEEEEEECC
T ss_conf 99079988693
|
| >d2ccaa1 a.93.1.3 (A:26-435) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Heme-dependent peroxidases superfamily: Heme-dependent peroxidases family: Catalase-peroxidase KatG domain: Catalase-peroxidase KatG species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=0 Score=30944.39 Aligned_cols=1 Identities=0% Similarity=-0.660 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~~~~wwp~~~~~~~l~~~~~~~~p~~~~f~y~~~~~~ld~~a~~~d~~~l~~~s~~wwpaD~G~ygP~lVRl 80 (410)
T d2ccaa1 1 MKYPVEGGGNQDWWPNRLNLKVLHQNPAVADPMGAAFDYAAEVATIDVDALTRDIEEVMTTSQPWWPADYGHYGPLFIRM 80 (410)
T ss_dssp CCCGGGTCCGGGTSTTCCCGGGGSCSCGGGCTTCTTCCHHHHHTTCCHHHHHHHHHHHHTSCCTTSCCGGGCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
T ss_conf 98987899766628644587555148877899999862899986269999999999998544335765456633001100
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 AWHsAGTYR~~DgRGGanGg~iRfaPe~sWp~N~~LdkAr~LL~piK~ky~~~iS~ADLi~LAG~vAiE~mGg~~i~f~~ 160 (410)
T d2ccaa1 81 AWHAAGTYRIHDGRGGAGGGMQRFAPLNSWPDNASLDKARRLLWPVKKKYGKKLSWADLIVFAGNCALESMGFKTFGFGF 160 (410)
T ss_dssp HHHHHTTCCTTTCCCSSTTCGGGSTTGGGCGGGTTHHHHHHTTHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCCCSCCCB
T ss_pred HHHHHCEEECCCCCCCCCCCEECCCHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCEECCEECCCCCCCCC
T ss_conf 22331301212677899877466541115312231899999988888760546567660336350210141255112455
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 GR~D~~~~~~~~~g~~~~~~~~~R~~~~~el~d~l~~~~m~li~~np~g~~g~pd~~~~a~~lRd~f~rMglnD~E~VAL 240 (410)
T d2ccaa1 161 GRVDQWEPDEVYWGKEATWLGDERYSGKRDLENPLAAVQMGLIYVNPEGPNGNPDPMAAAVDIRETFRRMAMNDVETAAL 240 (410)
T ss_dssp CCCCCSSCCCCCCCSCSSTTCCCCEETTTEECTTCCSSSTTCSSSCTTSGGGCCCHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 54435544200378866377899857632456754444458767787534689871017999999998706871766533
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 iaGgHtlGk~Hg~~~~~~~g~~p~~a~~~~~G~g~~~~~~~~~~~~~~~sG~eg~WT~~P~~~dN~yF~~Ll~~~we~~k 320 (410)
T d2ccaa1 241 IVGGHTFGKTHGAGPADLVGPEPEAAPLEQMGLGWKSSYGTGTGKDAITSGIEVVWTNTPTKWDNSFLEILYGYEWELTK 320 (410)
T ss_dssp HHHHHTSCCCCBSSCGGGBCCCGGGSCGGGTTCCCCBCSTTSSGGGCBSSSCCCCCCSCTTSCSSHHHHHHHHSCEEEEE
T ss_pred HCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEECC
T ss_conf 12421113346788734257784658702157755688787778555367865547668514535777541356515214
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 sp~g~~qw~~~d~~~~~~~pda~~~~~~~~~ml~tDlaL~~Dp~~r~iae~ya~d~d~F~~dFa~AW~KL~hrDmgp~~r 400 (410)
T d2ccaa1 321 SPAGAWQYTAKDGAGAGTIPDPFGGPGRSPTMLATDLSLRVDPIYERITRRWLEHPEELADEFAKAWYKLIHRDMGPVAR 400 (410)
T ss_dssp CTTSCEEEEEGGGTTTTCBCCTTSCCCBCCEECHHHHHHHHSHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTTSCSGGG
T ss_pred CCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 45655310355777777777776776678764226677520987899999997099999999999999986125796342
Q ss_pred ---------C
Q ss_conf ---------9
Q 000711 482 ---------S 482 (1338)
Q Consensus 482 ---------s 482 (1338)
+
T Consensus 401 ~~g~~~p~e~ 410 (410)
T d2ccaa1 401 YLGPLVPKQT 410 (410)
T ss_dssp CBSTTCCSCC
T ss_pred CCCCCCCCCC
T ss_conf 0689999889
|
| >d1p1ja1 c.2.1.3 (A:9-322,A:438-533) Myo-inositol 1-phosphate synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Myo-inositol 1-phosphate synthase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=30940.41 Aligned_cols=1 Identities=0% Similarity=-2.188 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~v~s~~~~y~~~~i~~~y~y~~t~v~~~~~g~~~v~p~~~~~~f~t~~~~p~klGVmlVG~GGnngTT~~aGv~An 80 (410)
T d1p1ja1 1 ITSVKVVTDKCTYKDNELLTKYSYENAVVTKTASGRFDVTPTVQDYVFKLDLKKPEKLGIMLIGLGGNNGSTLVASVLAN 80 (410)
T ss_dssp CCEEEECCTTEEEETTEEEEEEEEEEEEEEECTTSEEEEEEEEEEEEEEEECCCCSSEEEEEETTTSHHHHHHHHHHHHH
T ss_pred CCCEEEECCCEEECCCEEEEEEEECCEEEEECCCCEEEEEEEEEEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 96569828980773411799988510389976897089987567789994256786478998417852899999999997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 k~gl~w~tk~G~~~pny~GSltq~stirlG~~~~g~~~~~p~kd~lPl~~p~DiVfGGWDI~~~nl~eAa~rA~VLd~~l 160 (410)
T d1p1ja1 81 KHNVEFQTKEGVKQPNYFGSMTQCSTLKLGIDAEGNDVYAPFNSLLPMVSPNDFVVSGWDINNADLYEAMQRSQVLEYDL 160 (410)
T ss_dssp HTTCCEEETTEEECCCCTTCHHHHCEEEEEECTTSCEEEEEGGGSSCCCCGGGEEEEEECSSCCCHHHHHHHHTCSCHHH
T ss_pred HCCCCCCCCCCCCCCCCCCCEEEECEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHCCCCCHHH
T ss_conf 62786333556546763230210031431455788845663776188898412789245699988999998769999899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 l~ql~~~L~~i~P~psV~~~dfiaanq~~ra~nvi~~d~~~~~~~~sk~e~ve~Ir~DIr~Fk~~n~lDrVVVlWtASTE 240 (410)
T d1p1ja1 161 QQRLKAKMSLVKPLPSIYYPDFIAANQDERANNCINLDEKGNVTTRGKWTHLQRIRRDIQNFKEENALDKVIVLWTANTE 240 (410)
T ss_dssp HHHHHHHHTTCCCBCBCCCGGGSCGGGGGGCCCBSCBCTTSCBCSCCHHHHHHHHHHHHHHHHHHTTCSCEEEEECSCCC
T ss_pred HHHHHHHHHCCCCCCCEECCHHHHCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 99999998638634320060555212112102322456545546655899999999999999987389748999458887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 r~~~~~p~v~~t~e~l~~ai~~n~~eIsPS~lYA~AAI~eG~pyvNgsPq~t~vPal~eLA~~~gv~iaG~DfKdslLA~ 320 (410)
T d1p1ja1 241 RYVEVSPGVNDTMENLLQSIKNDHEEIAPSTIFAAASILEGVPYINGSPQNTFVPGLVQLAEHEGTFIAGDDLKDSLLAT 320 (410)
T ss_dssp CCCCCCTTTTSSHHHHHHHHHTTCTTCCHHHHHHHHHHHTTCCEEECSCSCCCCHHHHHHHHHHTCCEEESSBCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCHHHHHHHH
T ss_conf 68888832124399999887559987787999999999739984468864456579999984279458715124322345
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 pli~dL~vl~e~~trI~~~~dg~vl~d~~~f~~~~~Vls~Lsyl~KAPl~p~g~~vvnal~~Qr~~len~~ra~~Gl~p~ 400 (410)
T d1p1ja1 321 PLIIDLLVMTEFCTRVSYKKVDPVKEDAGKFENFYPVLTFLSYWLKAPLTRPGFHPVNGLNKQRTALENFLRLLIGLPSQ 400 (410)
T ss_dssp HHHHHHHHHHHHHHTEEEEECBTTBTTCSCCBCCCSBCGGGGGGBSSCCCCTTCCCCCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHEEEEEECCCCCCCCHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 89999999887650368621765457622162153089898887538989999965016888999999999997289986
Q ss_pred ---------C
Q ss_conf ---------9
Q 000711 482 ---------S 482 (1338)
Q Consensus 482 ---------s 482 (1338)
-
T Consensus 401 ~~m~le~~l~ 410 (410)
T d1p1ja1 401 NELRFEERLL 410 (410)
T ss_dssp CCCCHHHHCC
T ss_pred CCCEEEEECC
T ss_conf 6651146329
|
| >d1kfsa2 e.8.1.1 (A:519-928) DNA polymerase I (Klenow fragment) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: DNA polymerase I domain: DNA polymerase I (Klenow fragment) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=30937.35 Aligned_cols=1 Identities=0% Similarity=-0.527 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~g~~~~~~~iE~~~~~~la~Me~~Gi~vD~e~l~~~~~~~~~~~~~l~~~~~~~~g~~fn~~S~~ql~~~Lf~~lgl~~ 80 (410)
T d1kfsa2 1 HKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKP 80 (410)
T ss_dssp CHHHHHHHHHTHHHHHHHHHHHHHHCBCBCHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCSCTTTTSHHHHTTTSSCSC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 99689999999988999999999739898899999999999999999999999995990899999999999997429998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~t~~g~~~t~~~~L~~~~~~~~~~~~l~~~r~~~k~~~~~~~~~~~~~~~~~gri~~~~~~~gt~TGR~s~s~pnlQn 160 (410)
T d1kfsa2 81 LKKTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQN 160 (410)
T ss_dssp CCCCC----TTTCCHHHHHTTTCHHHHHHHHHHHHHHHHHHTTTTGGGGBCTTTSSBCCEEESSCCSSSCCEEESSCGGG
T ss_pred CCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEECCCCCCCCCCCC
T ss_conf 76478898554055410112223899999999999999887652433125778995412575124200232136863035
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~P~~~~~~~~iR~~fia~~G~~lv~~D~sqiE~Rv~A~ls~D~~l~~~~~~g~D~h~~~A~~~~~~~~~~~~~~~R~~aK 240 (410)
T d1kfsa2 161 IPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAK 240 (410)
T ss_dssp SCSSSHHHHHHHTTBBCCTTEEEEEEEETTHHHHHHHHHTTCHHHHHHHHTTCCHHHHHHHHHTTCCTTTCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHEEECCCCCEEEEECHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHHHHHHCCCCCHHCCCCHHHHHH
T ss_conf 78887423255632736999779985545384443444676224788885265067641999819973210220043320
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~g~~YG~G~~~la~~l~~s~~eA~~~~~~~~~~~p~i~~~~~~~~~~a~~~g~v~t~~Grr~~~~~~~~~~~~~r~~ 320 (410)
T d1kfsa2 241 AINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAA 320 (410)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCTTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSEEECTTCCEEECTTTTCSSHHHHHH
T ss_pred HEEEEHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCHHHHHHH
T ss_conf 31230141356778998809899999999999988787846899999999997595530368503699754405878888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~r~a~N~~iQg~aadi~k~a~~~i~~~l~~~~~~~~~v~~VHDEiv~ev~~~~~~~~~~~i~~~M~~~~~~~vPl~~e~ 400 (410)
T d1kfsa2 321 AERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCTRLDVPLLVEV 400 (410)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEEETTEEEEEEETTTHHHHHHHHHHHHHHSSCSSSCCCEEE
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECEEEEEEECHHHHHHHHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 88888652013389999999999999999852899889998453258998389999999999999846456898468320
Q ss_pred ---------C
Q ss_conf ---------9
Q 000711 482 ---------S 482 (1338)
Q Consensus 482 ---------s 482 (1338)
=
T Consensus 401 ~~g~~w~e~h 410 (410)
T d1kfsa2 401 GSGENWDQAH 410 (410)
T ss_dssp EEESBHHHHC
T ss_pred CCCCCHHHHC
T ss_conf 5628868829
|
| >d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA polymerases {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: DnaQ-like 3'-5' exonuclease domain: Exonuclease domain of family B DNA polymerases species: Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=30937.22 Aligned_cols=1 Identities=0% Similarity=0.238 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
.
T Consensus 1 ~~~~~~~~~~~~~ll~~~Y~~~~~~~vi~~~g~~~~~~~v~~~~~gf~PYFyv~~~~~~~~~~~~~~~~~~~~~~e~v~k 80 (410)
T d1s5ja1 1 EWLEEAQENKIYFLLQVDYDGKKGKAVCKLFDKETQKIYALYDNTGHKPYFLVDLEPDKVGKIPKIVRDPSFDHIETVSK 80 (410)
T ss_dssp CCSCBCCTTCEEEEEEEEEETTTTEEEEEEEETTTTEEEEEECCSCCCCEEEESSCHHHHTTCHHHHTCTTEEEEEEEEE
T ss_pred CCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 97655456875899986886329989999974269938999968896530899888216899998764236561799997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~ki~~~~p~~v~~~r~~~~~~~EadI~~~~RfliD~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (410)
T d1s5ja1 81 IDPYTWNKFKLTKIVVRDPLAVRRLRNDVPKAYEAHIKYFNNYMYDIGLIPGMPYVVKNGKLESVYLSLDEKDVEEIKKA 160 (410)
T ss_dssp ECTTTCCEEEEEEEEESSHHHHHHHTTSSSCEESCSSCHHHHHHHHHTCCTTSEEEEETTEEEECCCCCCHHHHHHHHHH
T ss_pred EECCCCCCEEEEEEEECCHHHHHHHHHHHHHHCCCCCCCHHCEEEECCCCCCEEEEECCCCCCCCCCCCCCCHHHHHCCC
T ss_conf 71237853069999982899999999874654013668421179994886635899558743334555672011010133
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~lsfDIE~~~~~~~~fP~p~~~~~~ii~I~~~~~~~~~~v~~~~~~~~~~~~~ 240 (410)
T d1s5ja1 161 FADSDEMTRQMAVDWLPIFETEIPKIKRVAIDIEVYTPVKGRIPDSQKAEFPIISIALAGSDGLKKVLVLNRNDVNEGSV 240 (410)
T ss_dssp TTTSCHHHHHHHHHHTHHHHSCCCCCCEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEEETTSCEEEEEECSSCCCCCCE
T ss_pred CCCCCCHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCC
T ss_conf 34443000000011354333689984199999997878889897953367549999998165878999981677766544
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~v~~~~sE~eLL~~F~~~i~dpDii~GyN~~~FD~pyL~~Ra~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 320 (410)
T d1s5ja1 241 KLDGISVERFNTEYELLGRFFDILLEYPIVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKF 320 (410)
T ss_dssp EETTEEEEEESSHHHHHHHHHHHHTTCSEEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHH
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCEEEEECCE
T ss_conf 67980999978999999998754316666898435688689999999995996321531104741016855458976062
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~d~~~~~~~~~~l~sy~Ld~Va~~~Lg~~K~d~~~~~~~~~~~~l~~Y~~~D~~L~~~L~~~~~~~~l~~~~~~s~i~ 400 (410)
T d1s5ja1 321 FFNKAVRNYAFEGKYNEYNLDAVAKALLGTSKVKVDTLISFLDVEKLIEYNFRDAEITLQLTTFNNDLTMKLIVLFSRIS 400 (410)
T ss_dssp HTSHHHHHHTSTTCCSSCSHHHHHHHHHCCCCC--SSCTTTCCHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred EEEHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 62148998752358788987999999869695567776565897999886099999999998652588899999999985
Q ss_pred ---------C
Q ss_conf ---------9
Q 000711 482 ---------S 482 (1338)
Q Consensus 482 ---------s 482 (1338)
|
T Consensus 401 ~~plddv~r~ 410 (410)
T d1s5ja1 401 RLGIEELTRT 410 (410)
T ss_dssp CCCHHHHTTS
T ss_pred CCCHHHCCCC
T ss_conf 9798980479
|
| >d1uuqa_ c.1.8.3 (A:) Exomannosidase {Cellvibrio mixtus [TaxId: 39650]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Exomannosidase species: Cellvibrio mixtus [TaxId: 39650]
Probab=100.00 E-value=0 Score=30935.82 Aligned_cols=1 Identities=0% Similarity=-0.127 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~v~~~g~~f~~nG~~~~~~G~N~~~~~~~~~~~~~~~~~~~~~~l~~~k~~G~N~iR~~~~~~~~~~~~~~~~~~~~~ 80 (410)
T d1uuqa_ 1 EHFVRVNGGHFELQGKPYVITGVNMWYAAYLGAPNEVGDRDRLAKELDNLKAIGVNNLRVLAVSEKSEINSAVKPAVTNG 80 (410)
T ss_dssp CCCCEEETTEEEETTEEECEEEEECTTHHHHTCSSTTCCHHHHHHHHHHHHHTTCCEEEEECCCBCCCSTTSCSSCSBSS
T ss_pred CCCEEEECCEEEECCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 99879989999999989999999317765566567879999999999999977995999687366545555568776554
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~g~~de~gl~~~d~~l~~a~~~Gi~vi~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (410)
T d1uuqa_ 81 FGNYDETLLQGLDYLLVELAKRDMTVVLYFNNFWQWSGGMTQYMAWIEGEPVQDPNVTNEWEAFMAKSASFYRSEKAQQE 160 (410)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHTTCEEEEECCBSSSTTCHHHHHHHHHHTCCCCCHHHHCCHHHHHHHHHGGGGCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 33245889999999999999739856874034556657754465312477767655555553335665300368999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~l~NE~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~dp~~~v~~~~~~~~~~ 240 (410)
T d1uuqa_ 161 YRKTLEKIITRVNSINGKAYVDDATIMSWQLANEPRPGNSQTTAEEKQIYIDWVHAAAAYIKTLDAHHLVSSGSEGEMGS 240 (410)
T ss_dssp HHHHHHHHHTCBCTTTCCBGGGCTTEEEEESCBSCCSCSTTCCHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCCSGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCC
T ss_conf 99999999986546666765577067666533665776676543320346677777775455408995576424566666
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~D~~s~h~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kPv~i~E~G~~~~~~~~~ 320 (410)
T d1uuqa_ 241 VNDMQVFIDAHATPDIDYLTYHMWIRNWSWFDKTKPAETWPSAWEKAQNYMRAHIDVAKQLNKPLVLEEFGLDRDMGSYA 320 (410)
T ss_dssp TTCHHHHHHHHCSTTCCSEEEEECTTTTTSSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCGGGCCC
T ss_pred CCCCCCHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC
T ss_conf 44321013440477655688612754446555433322222015666778888888876249976650255656788888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~d~~~~~~ 400 (410)
T d1uuqa_ 321 MDSTTEYRDNYFRGVFELMLASLEQGEPSAGYNIWAWNGYGRTTRANYWWQEGDDFMGDPPQEEQGMYGVFDTDTSTIAI 400 (410)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHTTCSEEEEEESCEEETCCCCCTTCCCCTTSCCCSSCTTSCTTSSCEETTCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHH
T ss_conf 76468999999999999999999828998999995416878888887778779987798985347348998899748899
Q ss_pred ---------C
Q ss_conf ---------9
Q 000711 482 ---------S 482 (1338)
Q Consensus 482 ---------s 482 (1338)
-
T Consensus 401 ~~~~~~~~~~ 410 (410)
T d1uuqa_ 401 MKEFNARFQP 410 (410)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHCCC
T ss_conf 9999974197
|
| >d2cmza1 e.76.1.2 (A:1-409) Spike glycoprotein {Vesicular stomatitis indiana virus [TaxId: 11277]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Viral glycoprotein ectodomain-like superfamily: Viral glycoprotein ectodomain-like family: Spike glycoprotein-like domain: Spike glycoprotein species: Vesicular stomatitis indiana virus [TaxId: 11277]
Probab=100.00 E-value=0 Score=30865.48 Aligned_cols=1 Identities=0% Similarity=-0.426 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~iv~p~~~~~~W~~v~~~~l~CP~~~~~~~~~~~~~~~~~~~~p~~~t~~kv~G~~Chk~~w~ttC~~~wyg~~~it~ 80 (409)
T d2cmza1 1 KFTIVFPHNQKGNWKNVPSNYHYCPSSSDLNWHNDLIGTAIQVKMPKSHKAIQADGWMCHASKWVTTCDFRWYGPKYITQ 80 (409)
T ss_dssp CEEEEEECSCCCCCEECCTTCCCCGGGGCTTTCCSCEEEEEEEEEECCCSCCEECEEEEEEEEEEEEEEECTTSCEEEEE
T ss_pred CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEECCEEEEEEEEEEEEEEEEECCEEEEE
T ss_conf 97689168888888237711244999745467786245558998103566336552798655899998746307558999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~i~~~~pt~~~C~~ai~~~~~G~~~~p~fPp~~C~w~tv~t~e~~~i~i~ph~V~lDpY~~~~~D~~F~gGkCs~~~C~T 160 (409)
T d2cmza1 81 SIRSFTPSVEQCKESIEQTKQGTWLNPGFPPQSCGYATVTDAEAVIVQVTPHHVLVDEYTGEWVDSQFINGKCSNYICPT 160 (409)
T ss_dssp EEEEECCCHHHHHHHHHHHHTTCCCCCCSCCCCCCTTSEEEEEEEEEEEEECCEEEETTTTEEECTTBGGGEECSSEEEB
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEECCCCEEECCCCCCCCCCCCCCCC
T ss_conf 99974499899999998876587258989985515631211037999996455325377882746757999668970677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~h~~tiWi~d~~~~~~C~~~~~~~~i~~~~~~gk~~s~g~~~~g~~~~~~~~~~~~gACkl~fCG~~GIRl~~GeWv~i~ 240 (409)
T d2cmza1 161 VHNSTTWHSDYKVKGLCDSNLISMDITFFSEDGELSSLGKEGTGFRSNYFAYETGGKACKMQYCKHWGVRLPSGVWFEMA 240 (409)
T ss_dssp SSSSCEEEESSCHHHHHGGGEEEEEEEEEESSCCGGGTTCSSCEEEETTEEEEECTTCEEEEETTEEEEECTTSBEEEES
T ss_pred CCCCCEECCCCCCCCCCCCCCCCCCEEEECCCCHHCCCCCCEEEEEECCCCCCCCCCCCEEEECCCCCEECCCCCEEEEE
T ss_conf 67861661577666501355301211684255600014653038983785545778831254348754687798589986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~p~C~~~~~v~~~~~~~~~~~~~~~~e~~~~~~~Cl~tl~ki~~~~~iS~~dLSyL~p~~PG~G~AY~i~n 320 (409)
T d2cmza1 241 DKDLFAAARFPECPEGSSISAPSQTSVDVSLIQDVERILDYSLCQETWSKIRAGLPISPVDLSYLAPKNPGTGPAFTIIN 320 (409)
T ss_dssp CHHHHHHTTCCBCCTTCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHTTSCCSSEEEEEEEEET
T ss_pred CCCCCEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCEEEEEC
T ss_conf 66641002577799998655036775166778999877879998999999974798775555420567999864379989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 gtL~~~~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~w~~w~~~~~~~~G~NG~~~~~~~~~~p~~~~~~~~~d~~l~~~~ 400 (409)
T d2cmza1 321 GTLKYFETRYIRVDIAAPILSRMVGMISGTTTERELWDDWAPYEDVEIGPNGVLRTSSGYKFPLYMIGHGMLDSDLHLSS 400 (409)
T ss_dssp TEEEEEEEEEEEEEESSSEESSSEEEETTSCCEEECCCCCEEETTEEECGGGCEEETTEEECCHHHHHHHHHHHHHHHHC
T ss_pred CEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEECCCEEEEECCEEEECHHHHCCCCHHHHHHHHH
T ss_conf 94897668999998226653332564477774542244646868844466526985994895656711520034444440
Q ss_pred --------C
Q ss_conf --------9
Q 000711 482 --------S 482 (1338)
Q Consensus 482 --------s 482 (1338)
-
T Consensus 401 ~~~~~~HPh 409 (409)
T d2cmza1 401 KAQVFEHPH 409 (409)
T ss_dssp CCEECCCCC
T ss_pred CCCCCCCCC
T ss_conf 267678999
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Probab=100.00 E-value=0 Score=30863.08 Aligned_cols=1 Identities=0% Similarity=-1.789 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~~y~~~~~~~l~~l~pe~ah~~~~~~l~~~~~~~~~~~~~~~L~~~v~Gl~f~NPiglAAG~dk~~~~i~~~ 80 (409)
T d1tv5a1 1 FESYNPEFFLYDIFLKFCLKYIDGEICHDLFLLLGKYNILPYDTSNDSIYACTNIKHLDFINPFGVAAGFDKNGVCIDSI 80 (409)
T ss_dssp CCTTSTTCHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTCSCCCCSCCCGGGCEEETTEEESSSEEECTTTTTTCSSHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCEECCCCCEECCCCCCCHHHHHHH
T ss_conf 98778326789999999852599899999999999735777534677744466788764489687560668788999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~lGfG~ve~gTvT~~p~~GNp~PR~~r~~~~~~liN~~Gl~n~G~~~~~~~l~~~~~~~~~~~~~~~~i~gi~~~~~~~ 160 (409)
T d1tv5a1 81 LKLGFSFIEIGTITPRGQTGNAKPRIFRDVESRSIINSCGFNNMGCDKVTENLILFRKRQEEDKLLSKHIVGVSIGKNKD 160 (409)
T ss_dssp HTTTCSEEEEEEECSSCBCCSCSCCEEEETTTTEEEECCCSCBSCHHHHHHHHHHHHHHHHHCSTTTTCEEEEEECCCTT
T ss_pred HHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 86688769951023035647897322345433321024677763589999987777654430566654300231454420
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~aD~~elNiScPNt~glr~~~~~~~L~~ll~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (409)
T d1tv5a1 161 TVNIVDDLKYCINKIGRYADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDESTYNEDNKIVEKKN 240 (409)
T ss_dssp CSCHHHHHHHHHHHHGGGCSEEEEECCCTTSTTGGGGGSHHHHHHHHHHHHHHHHHHC----------------------
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCC
T ss_conf 15788877999998850143100010265433442456889999999999999875301222221111111001111000
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~ppi~vKlsPd~~~~~i~~i~~~~~~~g~dgii~~Nt~~~~~~~~~~~~~~GGlS 320 (409)
T d1tv5a1 241 NFNKNNSHMMKDAKDNFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVS 320 (409)
T ss_dssp ----------------CCCCSSSSSCCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEE
T ss_pred CCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 11222222110000000110123567865998589987024688999988606541011322225555334234677643
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 G~~l~~~al~~v~~v~~~~~~~ipIIGvGGI~s~~Da~e~i~AGAs~VQv~T~li~~Gp~~v~~I~~~L~~~l~~~g~~~ 400 (409)
T d1tv5a1 321 GAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHLLYQRGYYN 400 (409)
T ss_dssp EHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHTTEEEEEESHHHHHHGGGHHHHHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 10178899999999999708996099989979999999999849978763067871192899999999999999829998
Q ss_pred --------C
Q ss_conf --------9
Q 000711 482 --------S 482 (1338)
Q Consensus 482 --------s 482 (1338)
-
T Consensus 401 i~e~iG~~h 409 (409)
T d1tv5a1 401 LKEAIGRKH 409 (409)
T ss_dssp SGGGTTTTC
T ss_pred HHHHCCCCC
T ss_conf 999539889
|
| >d1qtma2 e.8.1.1 (A:423-831) DNA polymerase I (Klenow fragment) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: DNA polymerase I domain: DNA polymerase I (Klenow fragment) species: Thermus aquaticus [TaxId: 271]
Probab=100.00 E-value=0 Score=30861.37 Aligned_cols=1 Identities=0% Similarity=-0.227 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~l~~~y~~lE~~l~~vl~~me~~Gi~vD~~~l~~~~~~~~~~~~~l~~~~~~~~g~~fN~~S~~ql~~~L~~~l~l~~ 80 (409)
T d1qtma2 1 EERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPA 80 (409)
T ss_dssp CHHHHHHHHHTHHHHHHHHHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHTTSCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 90789999999968999999999729284899999999999999999999999995991899999999999999739997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~g~~~~~~~~l~~l~~~~~~~~~~~~~~~~~kl~~~~~~~~~~~~~~~~grih~~~~~~gt~TGR~ss~~pnlq 160 (409)
T d1qtma2 81 IGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQ 160 (409)
T ss_dssp CCBCTTTCCBCCCHHHHHHTTTTCTHHHHHHHHHHHHHHHHHTTTTGGGGBCTTTSEECCEEESSCCSSSCCEEESSCCS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCHHH
T ss_conf 66656678755323368887421168999999889988888878778775038899163144556666665466650120
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~p~~~~~~~~~R~~f~a~~G~~lv~aD~sqiElRvlA~ls~D~~l~~~~~~g~D~~~~~a~~~~~~~~~~v~~~~R~~a 240 (409)
T d1qtma2 161 NIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAA 240 (409)
T ss_dssp SCCCSSHHHHHHHTTEECCTTEEEEEEEETTHHHHHHHHHHCCHHHHHHHHTTCCHHHHHHHHHHTCCGGGCCHHHHHHH
T ss_pred CCCCCHHHHHHHCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCEECCCCCCHHHHHHHHCCCCCEEECHHHHHHH
T ss_conf 25410014454100555789968998530236324688860674411110157620101012212764223140676667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 K~~~fg~~YG~g~~~l~~~~~~~~~ea~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~v~t~~Gr~~~~~~~~~~~~~~~~ 320 (409)
T d1qtma2 241 KTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVRE 320 (409)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHSEEECTTCCEEECGGGGCSCHHHHH
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCHHHHHHH
T ss_conf 76410123576334566665442778999999998864235677788999887627233235653332100001254432
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~~~~~N~~iQg~aAdi~k~a~~~~~~~l~~~~~~iv~~VHDEiv~ev~~~~a~~~~~~i~~~M~~~~~l~vPl~~e~~ 400 (409)
T d1qtma2 321 AAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLAVPLEVEVG 400 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSEEEEEEETTTHHHHHHHHHHHHHTSSCCSSCCCEEEE
T ss_pred HHHHHCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 20200121320399999999999999999886699899974413499987789999999999998603268997786621
Q ss_pred --------C
Q ss_conf --------9
Q 000711 482 --------S 482 (1338)
Q Consensus 482 --------s 482 (1338)
=
T Consensus 401 ig~~W~e~k 409 (409)
T d1qtma2 401 IGEDWLSAK 409 (409)
T ss_dssp EESBHHHHC
T ss_pred ECCCHHHCC
T ss_conf 558967749
|
| >d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: LanC-like family: LanC-like domain: Nisin biosynthesis protein NisC species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=30860.78 Aligned_cols=1 Identities=0% Similarity=-0.227 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sLy~G~~GiaL~l~~l~~~t~~~~~~~~a~~~l~~~~~~~~~~~~~~~g 80 (409)
T d2g0da1 1 KKNIKRNVEKIIAQWDERTRKNKENFDFGELTLSTGLPGIILMLAELKNKDNSKIYQKKIDNYIEYIVSKLSTYGLLTGS 80 (409)
T ss_dssp CCHHHHHHHHHHHHHHHHHHC-----CGGGGSTTTSHHHHHHHHHTTTTSTTHHHHHHHHHHHHHHHHHHHHHHCCSCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 95188999999985566530365569989983238779999999999886498789999999999999998607998863
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 lf~G~~Gi~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~D~l~G~aG~~~~LL~~~~~~~~~~~~ 160 (409)
T d2g0da1 81 LYSGAAGIALSILHLREDDEKYKNLLDSLNRYIEYFVREKIEGFNLENITPPDYDVIEGLSGILSYLLLINDEQYDDLKI 160 (409)
T ss_dssp TTTSHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCCHHHHSSSSSHHHHHHHHTTCCCGGGHHHHH
T ss_pred EECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCHHHHHHHHHHCCCCCCHHHH
T ss_conf 00787999999999986050356899999999999999999874402367766212226188999999833222407899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~sGi~~~L~~~~~~~~~~~~~~~~~~~~~~~l~ 240 (409)
T d2g0da1 161 LIINFLSNLTKENNGLISLYIKSENQMSQSESEMYPLGCLNMGLAHGLAGVGCILAYAHIKGYSNEASLSALQKIIFIYE 240 (409)
T ss_dssp HHHHHHHHTTSCCSSSCTTCBCGGGSSSHHHHHHCTTCBEECCTTTSHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 99999999997413554333454445552200036778776426550799999999998843788218999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~WChG~~Gi~la~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 320 (409)
T d2g0da1 241 KFELERKKQFLWKDGLVADELKKEKVIREASFIRDAWCYGGPGISLLYLYGGLALDNDYFVDKAEKILESAMQRKLGIDS 320 (409)
T ss_dssp HHCCCGGGTTCCCSEECHHHHHHTSCCSCCSCCCCCSSSSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCTTCCS
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 98642335688987676531123334456766655437884679999999998719889999999999999983548998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~LCHG~aG~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~G~aGi~~~Ll~~~~~~~~~~W~~~~L 400 (409)
T d2g0da1 321 YMICHGYSGLIEICSLFKRLLNTKKFDSYMEEFNVNSEQILEEYGDESGTGFLEGISGCILVLSKFEYSINFTYWRQALL 400 (409)
T ss_dssp CCTTTSHHHHHHHHHHHHHHHCCCTTHHHHHHHHHTHHHHHHSCCSTTCSSTTTSHHHHHHHHHHHHSCCCSSCGGGGGT
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHCCCCCCCCCCHHHC
T ss_conf 93568689999999999988488799999999999888743467899997244169999999998268999987112110
Q ss_pred --------C
Q ss_conf --------9
Q 000711 482 --------S 482 (1338)
Q Consensus 482 --------s 482 (1338)
-
T Consensus 401 ~~~~~~~~~ 409 (409)
T d2g0da1 401 LFDDFLKGG 409 (409)
T ss_dssp CCTTTTTCC
T ss_pred CCCCCCCCC
T ss_conf 456234488
|
| >d1b25a1 a.110.1.1 (A:211-619) Formaldehyde ferredoxin oxidoreductase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Aldehyde ferredoxin oxidoreductase, C-terminal domains superfamily: Aldehyde ferredoxin oxidoreductase, C-terminal domains family: Aldehyde ferredoxin oxidoreductase, C-terminal domains domain: Formaldehyde ferredoxin oxidoreductase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=0 Score=30859.53 Aligned_cols=1 Identities=0% Similarity=0.106 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 D~e~~~~~~~~~~~~i~~~~~~~~~~~~GT~~~~~~~~~~g~lP~rNf~~g~~~~a~~isge~~~~~~~~~~~C~~Cpi~ 80 (409)
T d1b25a1 1 DKEELKKLSQEAYNEILNSPGYPFWKRQGTMAAVEWCNTNYALPTRNFSDGYFEFARSIDGYTMEGMKVQQRGCPYCNMP 80 (409)
T ss_dssp CHHHHHHHHHHHHHHHHHSTTHHHHHHHGGGGHHHHHHHTTCSCBTTTTBSCCTTGGGGSHHHHHHHEEEEECCTTCSSC
T ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 98999999999999987194176788368599999998759968177878878873445899998775127888999678
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 C~~~~~~~~g~~~gpEYEt~~~~Gs~~gi~D~~~v~~~n~lcd~~GlDtIs~G~~ia~amE~~e~Gll~~~~~~Gd~e~~ 160 (409)
T d1b25a1 81 CGNVVLDAEGQESELDYENVALLGSNLGIGKLNEVSVLNRIADEMGMDTISLGVSIAHVMEAVERGILKEGPTFGDFKGA 160 (409)
T ss_dssp CEEEEECTTSCEEEECHHHHHHHTGGGTCCCHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHTTSSSSSCCTTCHHHH
T ss_pred CCCEEECCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
T ss_conf 88358728987078536479887660289999999999999998687456450599999999977999866667886999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~ll~~Ia~r~GeiG~~La~G~~~aae~~G~~~~a~~vKG~e~p~~dpR~~~g~~l~yats~rGa~H~~~~~~~~~~~~~ 240 (409)
T d1b25a1 161 KQLALDIAYRKGELGNLAAEGVKAMAEKLGTHDFAMHVKGLEVSGYNCYIYPAMALAYGTSAIGAHHKEAWVIAWEIGTA 240 (409)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCHHHHHHHHTCGGGCCEETTEECCSCCCTTCHHHHHHHHHCTTSSCSTTCCCHHHHHTCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHCCC
T ss_conf 99999998667857899973399999994982321020777666527763024666551246787045533220331357
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dslg~C~F~~~~~~~~~e~~~~~l~avTG~~~t~eel~~~GeRi~ 320 (409)
T d1b25a1 241 PIEGEKAEKVEYKISYDPIKAQKVVELQRLRGGLFEMLTACRLPWVEVGLSLDYYPKLLKAITGVTYTWDDLYKAADRVY 320 (409)
T ss_dssp TTC--------CCCCCCTHHHHHHHHHHHHHTTHHHHHTCCSHHHHHHCCCTTHHHHHHHHHHSCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 41110123312345678078999999999999999860404552214577899999999984388999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~L~R~fN~r~G~~~~~~~dD~lP~r~~~ep~~~Gp~~G~~~d~~~~e~~l~~YY~~rGWde~G~Pt~e~L~~LgL~~v~~ 400 (409)
T d1b25a1 321 SLIRAYWVREFNGKWDRKMDYPPKRWFTEGLKSGPHKGEHLDEKKYDELLSEYYRIRGWDERGIPKKETLKELDLDFVIP 400 (409)
T ss_dssp HHHHHHHHHHTTTCCCGGGGCCCTHHHHCCCSSSTTTTCCCCHHHHHHHHHHHHHHHTBCTTSCBCHHHHHHTTCTTHHH
T ss_pred HHHHHHHHHCCCCCCCHHHCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCHHHHH
T ss_conf 99999998606679983427797154118887787578868999999999999997399988846999999879966899
Q ss_pred --------C
Q ss_conf --------9
Q 000711 482 --------S 482 (1338)
Q Consensus 482 --------s 482 (1338)
-
T Consensus 401 ~l~~~~~~~ 409 (409)
T d1b25a1 401 ELEKVTNLE 409 (409)
T ss_dssp HHHTTSCCC
T ss_pred HHHHHHCCC
T ss_conf 999986169
|
| >d1s9ra_ d.126.1.4 (A:) Arginine deiminase {Mycoplasma arginini [TaxId: 2094]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pentein, beta/alpha-propeller superfamily: Pentein family: Arginine deiminase domain: Arginine deiminase species: Mycoplasma arginini [TaxId: 2094]
Probab=100.00 E-value=0 Score=30858.50 Aligned_cols=1 Identities=0% Similarity=-0.960 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
.
T Consensus 1 ~~~~~~~~~~~v~SE~g~Lk~V~vhrPg~e~~~l~P~~~~~~lfd~~~~~~~a~~Ehd~f~~~L~~~Gv~V~~l~~ll~e 80 (409)
T d1s9ra_ 1 SVFDSKFKGIHVYSEIGELESVLVHEPGREIDYITPARLDELLFSAILESHDARKEHKQFVAELKANDINVVELIDLVAE 80 (409)
T ss_dssp CCSCTTCCSCBBCCSSSCEEEEEECCCCGGGGGCCGGGHHHHTCSSCCCHHHHHHHHHHHHHHHHTTTCEEEEHHHHHHH
T ss_pred CCCCCCCCCCEEECCCCCCCEEEECCCCHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHH
T ss_conf 93113778641577700131799769848987269311577514777799999999999999999789889983786876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~g~~~~e~~~~~~~~~~~~plpn~~F~RD 160 (409)
T d1s9ra_ 81 TYDLASQEAKDKLIEEFLEDSEPVLSEEHKVVVRNFLKAKKTSRELVEIMMAGITKYDLGIEADHELIVDPMPNLYFTRD 160 (409)
T ss_dssp HHHHSCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHTCSSHHHHHHHHHHCEEHHHHTCCCSSSEEECCCGGGGCTTS
T ss_pred HHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCHHCCC
T ss_conf 55407999999999863101134454768888999986048889999988524515442555676334678755200057
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~gvil~~m~~~~R~~E~~~~~~i~~~~~~~~~~~~~~~~~~~~~~EGGD~l~~g~~~~~iG~s~RTn~~gie~L 240 (409)
T d1s9ra_ 161 PFASVGNGVTIHYMRYKVRQRETLFSRFVFSNHPKLINTPWYYDPSLKLSIEGGDVFIYNNDTLVVGVSERTDLQTVTLL 240 (409)
T ss_dssp SEEEEBTEEEECCCSSHHHHTTHHHHHHHHHHCTTTTTCCEEECGGGCSCCCGGGEEECSSSEEEEEESSSCCHHHHHHH
T ss_pred CEEEECCCEEECCCCCHHHCCCHHHHHHHHHHCHHHCCCCEEEECCCCCCCCCCCEEEECCCEEEEEECCCCCHHHHHHH
T ss_conf 43687486897899984665477999999984844349855972687664556747998996799997876798999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~L~~~~~~~~~~v~~~~~p~~~~~mHLDt~f~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 320 (409)
T d1s9ra_ 241 AKNIVANKECEFKRIVAINVPKWTNLMHLDTWLTMLDKDKFLYSPIANDVFKFWDYDLVNGGAEPQPVENGLPLEGLLQS 320 (409)
T ss_dssp HHHHHHCTTCCCCEEEEEECCCBTTBCSGGGTEEECSSSEEEECGGGTTTCEEEEEETTTSCSSCCCEEECCCHHHHHHH
T ss_pred HHHHHHCCCCEEEEEEEECCCCCCCCEEECCCEEECCCCEEEECCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99863447712689875047886552233560243279849982543564220012203676654101210338999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~~~~~~i~~~~~~~~~~~~~~E~~~~~~N~L~l~p~~Vi~~~~~~~~~~~L~~~Gievi~i~~~el~~~gGg~hCmT~ 400 (409)
T d1s9ra_ 321 IINKKPVLIPIAGEGASQMEIERETHFDGTNYLAIRPGVVIGYSRNEKTNAALEAAGIKVLPFHGNQLSLGMGNARCMSM 400 (409)
T ss_dssp HHSSCCEEEETTCTTCCHHHHHHHHHTTTTCCEEEETTEEEEETTCHHHHHHHHHTTCEEEEECCHHHHTTSCCTTTTCE
T ss_pred HHCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCCEEEEECCCHHHHHHHHHCCCEEEEECHHHHHCCCCCCEECCC
T ss_conf 74799808984688764566655540574049997799899858869999999978899999673785327998777870
Q ss_pred --------C
Q ss_conf --------9
Q 000711 482 --------S 482 (1338)
Q Consensus 482 --------s 482 (1338)
-
T Consensus 401 pl~Re~v~~ 409 (409)
T d1s9ra_ 401 PLSRKDVKW 409 (409)
T ss_dssp EEEECCCCC
T ss_pred CCEECCCCC
T ss_conf 345279899
|
| >d1dkla_ c.60.1.2 (A:) Phytase (myo-inositol-hexakisphosphate-3-phosphohydrolase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate mutase-like superfamily: Phosphoglycerate mutase-like family: Histidine acid phosphatase domain: Phytase (myo-inositol-hexakisphosphate-3-phosphohydrolase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=30855.76 Aligned_cols=1 Identities=0% Similarity=-0.559 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~p~~~L~~V~il~RHG~R~P~~~~~~~~~~~~~~~~~~~~~~G~LT~~G~~q~~~lG~~lr~~Y~~~~~~~~~~~~~~~ 80 (409)
T d1dkla_ 1 SEPELKLESVVIVSRHGVRAPTKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYLGHYQRQRLVADGLLAKKGCPQSG 80 (409)
T ss_dssp CCSCEEEEEEEEEEECCCBCCCCCCHHHHHTCSSCCCCCSSCTTSBCHHHHHHHHHHHHHHHHHHHHTTSSCSSSCCCTT
T ss_pred CCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 99888898999997188899999866557688433557999930526999999999999999998774367887778712
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~i~vrSt~~~Rt~~SA~afl~Gl~p~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (409)
T d1dkla_ 81 QVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQADTSSPDPLFNPLKTGVCQLDNANVTDAILSRAGGSIADFTGHRQT 160 (409)
T ss_dssp TEEEEECSSHHHHHHHHHHHHHHSTTCCCCEECCSCTTSCCGGGCTTTTTSSCCCHHHHHHHHHHHTTSSHHHHHHTTHH
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 06987279729999999999852788676655445556667566777577667536777789987745647778899889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~p~~~~~~~~~ 240 (409)
T d1dkla_ 161 AFRELERVLNFPQSNLCLKREKQDESCSLTQALPSELKVSADNVSLTGAVSLASMLTEIFLLQQAQGMPEPGWGRITDSH 240 (409)
T ss_dssp HHHHHHHHHTGGGSHHHHTC-----CCCHHHHSCCCEEEETTEEEECHHHHHHHHHHHHHHHHHHHTCSSGGGGTCCSHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCCHH
T ss_conf 99999999721121037877510037889999899988640477767726667659999999998599972110357799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~k~~l~s~HD~ti~~ll~aLgl~~~~~ 320 (409)
T d1dkla_ 241 QWNTLLSLHNAQFYLLQRTPEVARSRATPLLDLIKTALTPHPPQKQAYGVTLPTSVLFIAGHDTNLANLGGALELNWTLP 320 (409)
T ss_dssp HHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHSCCCCEECGGGCEESCSEEEEEECHHHHHHHHHHHTCCCCBT
T ss_pred HHHHHHHHHHHHHEECCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCC
T ss_conf 99999999998650005887899873668999999999876404555678888638999568414999999819853456
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~~~~p~as~~~~El~~~~~~~~~~vrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gC~~~~~~~~C~l~~F~~~~~ 400 (409)
T d1dkla_ 321 GQPDNTPPGGELVFERWRRLSDNSQWIQVSLVFQTLQQMRDKTPLSLNTPPGEVKLTLAGCEERNAQGMCSLAGFTQIVN 400 (409)
T ss_dssp TBSCSSCTTCEEEEEEEEETTTTEEEEEEEEEECCHHHHHTTCCCCSSSCCEEEECCCTTCCCBCTTSCEEHHHHHHHHH
T ss_pred CCCCCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCEEEECCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 66899997663899999846999725999995376201245665201025775046479998889999368999999999
Q ss_pred --------C
Q ss_conf --------9
Q 000711 482 --------S 482 (1338)
Q Consensus 482 --------s 482 (1338)
-
T Consensus 401 ~~~~p~c~~ 409 (409)
T d1dkla_ 401 EARIPACSL 409 (409)
T ss_dssp HHSCGGGCC
T ss_pred HHHHHHCCC
T ss_conf 775021279
|
| >d1wzaa2 c.1.8.1 (A:28-436) Bacterial alpha-amylase {Halothermothrix orenii [TaxId: 31909]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Halothermothrix orenii [TaxId: 31909]
Probab=100.00 E-value=0 Score=30858.32 Aligned_cols=1 Identities=0% Similarity=-1.225 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~k~~v~Y~~~~~~f~d~~~~~~Gd~~g~~~kLdyl~~~~~~~i~~LGv~~i~l~Pi~~~~~~~GY~~~d~~~vd~~~G~ 80 (409)
T d1wzaa2 1 FEKHGTYYEIFVRSFYDSDGDGIGDLKGIIEKLDYLNDGDPETIADLGVNGIWLMPIFKSPSYHGYDVTDYYKINPDYGT 80 (409)
T ss_dssp CCCCCCEEEECGGGSCCSSSSSCCCHHHHHHTHHHHCCSCTTCCSSCCCSEEEECCCEECSSSSCCSCSEEEEECGGGCC
T ss_pred CCCCCEEEEEECCHHCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98761799996412137999987489999975533210022277616866799798887989888684567875834599
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~dlk~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (409)
T d1wzaa2 81 LEDFHKLVEAAHQRGIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPDTDTKETKLDGGRVWHYSPTGMYYGY 160 (409)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCSBCCTTSHHHHHHHTCTTCTTGGGBCBCCSCCCCCBCSSSCBCSEEEETTEEEECS
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999999866988998213344445673123331146553345322356444567654579853322346664466
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~dln~~n~~vr~~~~~~~~~wi~~gVDGfR~D~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~ 240 (409)
T d1wzaa2 161 FWSGMPDLNYNNPEVQEKVIGIAKYWLKQGVDGFRLDGAMHIFPPAQYDKNFTWWEKFRQEIEEVKPVYLVGEVWDISET 240 (409)
T ss_dssp SCTTSCBBCTTSHHHHHHHHHHHHHHHHTTCCEEEEECCCTTSCGGGTTHHHHHHHHHHHHHTTTSCCEEEEECCSCHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEECCCCHHHCCCCHHCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCC
T ss_conf 77887620325689999999999999982987212253532166032020068999999740037880799986037521
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nhD~~r~~~~~~~~~~~~~~ 320 (409)
T d1wzaa2 241 VAPYFKYGFDSTFNFKLAEAVIATAKAGFPFGFNKKAKHIYGVYDREVGFGNYIDAPFLTNHDQNRILDQLGQDRNKARV 320 (409)
T ss_dssp HGGGGTTTCSEEBCHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHTCTTSCCCBCBSCCTTSCCHHHHTTTCHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 13444202232012468999988774167521678877777766543002456556312455567310002786678999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~~~lt~pG~P~iy~G~E~G~~~~~~~~~~R~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~Li~l 400 (409)
T d1wzaa2 321 AASIYLTLPGNPFIYYGEEIGMRGQGPHEVIREPFQWYNGSGEGETYWEPAMYNDGFTSVEQEEKNLDSLLNHYRRLIHF 400 (409)
T ss_dssp HHHHHTTSSSCCEEETTGGGTCCCCSSHHHHTCCCCCSSSCCTTCCCSSCCTTTTTTCCHHHHTTCTTSHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCEEECCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99999838998799558653766899986546788777788888776775555655468998863748999999999999
Q ss_pred --------C
Q ss_conf --------9
Q 000711 482 --------S 482 (1338)
Q Consensus 482 --------s 482 (1338)
|
T Consensus 401 Rk~~pal~s 409 (409)
T d1wzaa2 401 RNENPVFYT 409 (409)
T ss_dssp HHHCTHHHH
T ss_pred HHHCCHHCC
T ss_conf 960813039
|
| >d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Family 10 polysaccharide lyase family: Family 10 polysaccharide lyase domain: Polygalacturonic acid lyase (pectate lyase) species: Azospirillum irakense [TaxId: 34011]
Probab=100.00 E-value=0 Score=30788.43 Aligned_cols=1 Identities=100% Similarity=0.902 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
.
T Consensus 1 ~~~~~~~~a~~~t~ar~~~~p~~~~aAw~~y~a~s~~~~~a~~~~~~a~~~~g~~~p~~p~~~~~~~~~~l~~~~~wy~s 80 (408)
T d1r76a_ 1 AVIGMNEAASALTPSRVSSLPDTQRAAWQEYLARSEAQLSRDKASLAAELAPGQPLPPPPAEGKGADTMPLDKPAAWYTS 80 (408)
T ss_dssp CCCEECCCCCCCCHHHHSSCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCCCCCCCSCCGGGSCSSSCGGGGGS
T ss_pred CCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
T ss_conf 95554541011687776369878888986436665556766776666653248878999986643033671467444577
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~eA~~iAd~lL~~Q~p~GGWpKn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiDN~aTt~el~~La~ 160 (408)
T d1r76a_ 81 KAARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQ 160 (408)
T ss_dssp HHHHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 79999999999853447998776653200110102232210134455300144555542246788686248999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~y~~a~~~~~~~ll~~Q~~~Ggwpqf~p~~~~Y~~~ItfND~~m~~~l~~l~~~~~~~~~~~~~~~~~r 240 (408)
T d1r76a_ 161 VVSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIR 240 (408)
T ss_dssp HHHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHHH
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 99973763214699999999999997317799964437887552343112755899799999999973465344787889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~r~~~a~~rgi~~ll~~Q~~~gg~~~~Wg~Qhd~~tl~P~~aR~yE~~sls~~eS~~i~~~LM~~~~ps~~~~~aI~~av 320 (408)
T d1r76a_ 241 TRALEATNAAIHCIVETQVVQDGKRLGWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGGV 320 (408)
T ss_dssp HHHHHHHHHHHHHHHHHSCEETTEECCCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 99999999999999987610488867486525835567344336677264003189999999717777755999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~Wl~~~~~~~~~~~~~~~~~~~~~~~~~~~lwaRfyel~tn~P~f~~Rd~~~~~~~~ei~~err~gy~w~~~~~~~~~~~ 400 (408)
T d1r76a_ 321 AWLNTSVIRDRAWVKSDQGYQLVTEQGAKPLWSRFYSLDGNKPVFGDRDKTIHDDVMGISQERRTGYAWYTTSPQKALSA 400 (408)
T ss_dssp HHHHHSCCCC---------------CCSSCCEESEECSSSCCBCEECTTSEEESCGGGSCHHHHSSSCCEESTTHHHHHH
T ss_pred HHHHHCCCCCCEEEECCCCCEEEECCCCCCCCEEEEECCCCCEEEECCCCCEECCHHHCCHHHCCCCCCCCCCHHHHHHH
T ss_conf 99986646785355348884242089998533256775899624657998653477662097628702427776999998
Q ss_pred -------C
Q ss_conf -------9
Q 000711 482 -------S 482 (1338)
Q Consensus 482 -------s 482 (1338)
.
T Consensus 401 y~~w~~~~ 408 (408)
T d1r76a_ 401 FTKWEKRS 408 (408)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHCC
T ss_conf 89987449
|
| >d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=30786.17 Aligned_cols=1 Identities=0% Similarity=-0.227 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~p~~dqp~aI~~l~~~L~~g~~~~~L~GlsgS~ka~~~A~l~~~~~rp~LvVt~~~~~A~~l~~dL~~~l~~~ 80 (408)
T d1c4oa1 1 TFRYRGPSPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQLAAEFRELFPEN 80 (408)
T ss_dssp CCCCCSCCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHHHCTTS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCC
T ss_conf 96214899998779999999999866997379856888789999999999859999999189999999999999864766
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~v~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viVv~~~a~l~~l~~~~~~~~~~~~l~~G 160 (408)
T d1c4oa1 81 AVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLLTRRDVIVVASVSAIYGLGDPREYRARNLVVERG 160 (408)
T ss_dssp EEEECCCGGGTSCCCEEEGGGTEEECCCCSCCHHHHHHHHHHHHHHHHCSCEEEEEEGGGCSCCCCHHHHHHCCBC----
T ss_pred CEEECCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCHHHHHCEEEEECC
T ss_conf 45567753422575456845554444421034677764446555320467659995112321678818876114885179
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~l~~~L~~~gY~r~~~V~~~GefsvRG~IlDIfp~~~~~P~RIeffgDeIdsIr~Fd~~tQrs~~~~~~~~i~P 240 (408)
T d1c4oa1 161 KPYPREVLLERLLELGYQRNDIDLSPGRFRAKGEVLEIFPAYETEPIRVELFGDEVERISQVHPVTGERLRELPGFVLFP 240 (408)
T ss_dssp --------------------------------------------------------------------------CCCBCC
T ss_pred CEEEHHHHHHHHHHHHCEECCEEECCCEEEEECCCEEECCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEEEEEEEC
T ss_conf 89508999999997522214305336605730671276002457637899946733268997278896567655456522
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 a~e~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~Gie~yl~~f~~~~~~e~~~tL~ 320 (408)
T d1c4oa1 241 ATHYLSPEGLEEILKEIEKELWERVRYFEERGEVLYAQRLKERTLYDLEMLRVMGTCPGVENYARYFTGKAPGEPPYTLL 320 (408)
T ss_dssp SCSCCCCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCCTTGGGGHHHHHTCCTTSCCCCGG
T ss_pred CCEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHH
T ss_conf 41110135578888876566899999998737416777799999988877875188765777799865778899852466
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 DYlp~~~lv~~De~~~~~~~~~~~~~e~~e~~~~lle~g~~lP~~~d~~~L~~ee~~~~~~q~i~~S~~p~~~e~~~~~~ 400 (408)
T d1c4oa1 321 DYFPEDFLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVFVSATPGPFELAHSGR 400 (408)
T ss_dssp GGSCTTCEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSSCCCHHHHHHTCSEEEEEESSCCHHHHHHCSE
T ss_pred HHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCCCCHHHCCCCC
T ss_conf 51687508999582877999999998899999868757867885434798899999985598899808998422306885
Q ss_pred -------C
Q ss_conf -------9
Q 000711 482 -------S 482 (1338)
Q Consensus 482 -------s 482 (1338)
-
T Consensus 401 ive~~~Rp 408 (408)
T d1c4oa1 401 VVEQIIRP 408 (408)
T ss_dssp EEEECSCT
T ss_pred EEEEEECC
T ss_conf 47996088
|
| >d1f1oa_ a.127.1.1 (A:) Adenylosuccinate lyase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: Adenylosuccinate lyase species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=30786.04 Aligned_cols=1 Identities=0% Similarity=-0.892 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 em~~ifs~~~~~~~~l~ve~A~a~a~~e~G~ip~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~a~~~~L~e~~g~~~~~v 80 (408)
T d1f1oa_ 1 EMSAIWTDENRFQAWLEVEILACEAWAELGVIPKEDVKVMRENASFDINRILEIEKDTRHDVVAFTRAVSESLGEERKWV 80 (408)
T ss_pred CHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 94787790799999999999999999877999999999999847677999998874538858999999998738646341
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 H~G~SsnD~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTh~Q~A~P~T~G~~~~~~~~~l~r~~~rL 160 (408)
T d1f1oa_ 81 HYGLTSTDVVDTALSYLLKQANDILLKDLERFVDIIKEKAKEHKYTVMMGRTHGVHAEPTTFGLKLALWHEEMKRNLERF 160 (408)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 67887899998999999998488888899999999999999828860146675177777408899999999999879999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~lGGA~Gt~~~~~~~~~~~~~~~lg~~~~~~~~~~~~rd~~~e~~~~l~~la~~l~kia~Dl~~~~s~~~ 240 (408)
T d1f1oa_ 161 KQAKAGIEVGKISGAVGTYANIDPFVEQYVCEKLGLKAAPISTQTLQRDRHADYMATLALIATSIEKFAVEIRGLQKSET 240 (408)
T ss_pred HHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99987650124460431346788558999999846767872278887788999987999999999987789998871344
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~e~~~~~~~GSSiMP~K~NP~~~E~v~~~~~~~~g~~~~~~~~~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~ 320 (408)
T d1f1oa_ 241 REVEEFFAKGQKGSSAMPHKRNPIGSENMTGMARVIRGYMMTAYENVPLWHERDISHSSAERIILPDATIALNYMLNRFS 320 (408)
T ss_pred CEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 61440366789875200035564079999987601111378998726431200304567776214009999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~l~~l~vn~e~m~~nl~~~~~~~~a~~~~~~Lv~~gl~~~~Ah~~v~~~~~~a~~~~~~l~e~l~~~~~i~~~Ls~eel 400 (408)
T d1f1oa_ 321 NIVKNLTVFPENMKRNMDRTLGLIYSQRVLLALIDTGLTREEAYDTVQPKAMEAWEKQVPFRELVEAEEKITSRLSPEKI 400 (408)
T ss_pred HHHHCCEECHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHCCCCHHHH
T ss_conf 87637865799999999730472689999999998299989999999999999999798899998706786668999999
Q ss_pred -------C
Q ss_conf -------9
Q 000711 482 -------S 482 (1338)
Q Consensus 482 -------s 482 (1338)
=
T Consensus 401 ~~~lDp~~ 408 (408)
T d1f1oa_ 401 ADCFDYNY 408 (408)
T ss_pred HHHCCCCC
T ss_conf 98659998
|
| >d1h4pa_ c.1.8.3 (A:) Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Exo-beta-(1,3)-glucanase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=30783.77 Aligned_cols=1 Identities=0% Similarity=-1.025 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~~~~~rGvNlGgWlv~E~wi~p~~f~~~~~~~~~~~~~~~de~~~~~~~G~~~~~~~~~~h~~~~ite~D~~ 80 (408)
T d1h4pa_ 1 YYDYDHGSLGEPIRGVNIGGWLLLEPYITPSLFEAFRTNDDNDEGIPVDEYHFCQYLGKDLAKSRLQSHWSTFYQEQDFA 80 (408)
T ss_dssp CCCTTSCTTSSCEEEEECTTSSSCCTTTSHHHHHTTCCCTTCCTTCCSSHHHHHHHHCHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCCCCCCCCCCEEEEEECCHHHCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 96666787798325886515540466667315554256666555542209999998687889999999885328899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~i~~~G~N~VRiPi~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gl~VilDlH~~pG~~~~~~~~~~~~~~~~~~~~~ 160 (408)
T d1h4pa_ 81 NIASQGFNLVRIPIGYWAFQILDDDPYVSGLQESYLDQAIGWARNNSLKVWVDLHGAAGSQNGFDNSGLRDSYKFLEDSN 160 (408)
T ss_dssp HHHHTTCCEEEEEEEGGGTCCCTTCCCCCSSHHHHHHHHHHHHHHTTCEEEEEEEECTTCSSCCGGGSSTTCCCTTSHHH
T ss_pred HHHHCCCCEEEEECCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 99977998799854499934778887758158999999999999889989998378998776778877656645578168
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~ia~r~~~~~~~~~v~g~el~NEP~~~~~~~~~~~~~~~~~~~~~iR~~~~~~~~iv~~d~~~~~~~w~~~ 240 (408)
T d1h4pa_ 161 LAVTINVLNYILKKYSAEEYLDIVIGIELINEPLGPVLDMDKMKNDYLAPAYEYLRNNIKSDQVIIIHDAFQPYNYWDDF 240 (408)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHTTEEEEESCSCCCGGGSCHHHHHHHTHHHHHHHHHHTTCCCCCEEEECTTCCTTGGGGS
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHH
T ss_conf 99999999999999631345664234412567665666557789999999999998634668569980687770145554
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~vv~D~H~Y~~f~~~~~~~s~~~~i~~~~~~~~~~~~~~~p~~vGEws~a~td~~~~~n~~g~~~~~~ge~~ 320 (408)
T d1h4pa_ 241 MTENDGYWGVTIDHHHYQVFASDQLERSIDEHIKVACEWGTGVLNESHWIVCGEFAAALTDCIKWLNSVGFGARYDGSWV 320 (408)
T ss_dssp SCGGGTCCSEEEEEEECSCSSHHHHTCCHHHHHHHHHHHHHHHTTCSSEEEEEEECSCSSSCSTTTTCTTCCCTTBTCCC
T ss_pred CCCCCCCCEEEEECCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEECCCC
T ss_conf 26677786367610223541377556775543311433344543156885243112331104441256554430104413
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~~~~~~~g~c~~~~~~~~~~~~~~~~~r~~~eaQ~~~ye~~~GW~fWt~K~e~~~~W~~~~~~~~g~iP~~~~~~~~~ 400 (408)
T d1h4pa_ 321 NGDQTSSYIGSCANNDDIAYWSDERKENTRRYVEAQLDAFEMRGGWIIWCYKTESSLEWDAQRLMFNGLFPQPLTDRKYP 400 (408)
T ss_dssp BTTBCCCBCSCCTTTTCGGGCCHHHHHHHHHHHHHHHHHHTTTTEEEESCSCCSSCSTTCHHHHHHTTSSCSSTTCCSST
T ss_pred CCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCC
T ss_conf 67767655565446677001778899999999999999984589777852137999878889999787808896124687
Q ss_pred -------C
Q ss_conf -------9
Q 000711 482 -------S 482 (1338)
Q Consensus 482 -------s 482 (1338)
|
T Consensus 401 ~~cg~~~~ 408 (408)
T d1h4pa_ 401 NQCGTISN 408 (408)
T ss_dssp TGGGSCCC
T ss_pred CCCCCCCC
T ss_conf 75567889
|
| >d2hhva2 e.8.1.1 (A:469-876) DNA polymerase I (Klenow fragment) {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: DNA polymerase I domain: DNA polymerase I (Klenow fragment) species: Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]
Probab=100.00 E-value=0 Score=30784.19 Aligned_cols=1 Identities=0% Similarity=-0.227 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~e~ll~~lE~~l~~vLa~ME~~Gi~vD~e~l~~~~~~l~~~~~~le~~i~~~~G~~fN~~S~~ql~~~Lf~~L~l~~~~ 80 (408)
T d2hhva2 1 EQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLGVILFEKLQLPVLK 80 (408)
T ss_dssp TCHHHHHTTHHHHHHHHHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHTTSCCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 97689999988899999999984969789999999999999999999999999699679999999999999855999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~r~~~k~~~~~~~~~~~~~~~~~gRih~~~~~~gt~TGR~s~~~Pnlqn~p~ 160 (408)
T d2hhva2 81 KTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPI 160 (408)
T ss_dssp BCSSSBCCCHHHHHHHGGGCHHHHHHHHHHHHHHHHHTTTHHHHHHSCTTTCEECCEEESSCCSSSCCEEESSCTTCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEECCCCCEECCEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 58788655335677750112579999999999888886533324305089985787200357654445557632146777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~r~~~~~~~g~~lv~~DysqiElRvlA~ls~D~~l~~~~~~g~D~h~~~a~~~~~~~~~~~~~~~R~~aK~~ 240 (408)
T d2hhva2 161 RLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAV 240 (408)
T ss_dssp SSHHHHGGGGGEECSSTTEEEEEEEESSHHHHHHHHHHTCHHHHHHHHTTCCHHHHHHHHHHTCCGGGCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHEEECCCCEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHH
T ss_conf 64335023312113047845887220215199999994888899987744215665455404777888070677889987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~fg~~YG~g~~~l~~~~~~~~~ea~~~~~~~~~~~p~i~~~~~~~~~~a~~~g~~~~~~grrr~~p~~~~~~~~~r~~~~ 320 (408)
T d2hhva2 241 NFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAE 320 (408)
T ss_dssp HHHHHHCCCHHHHHHHHTCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSEEECTTCCEEECGGGGCSSHHHHHHHH
T ss_pred HHCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHH
T ss_conf 61533245115546101222788999999998640116255789999999828875467984158865566676767888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 r~a~N~~iQgsaAdi~k~a~~~~~~~l~~~~~~~~lv~~VHDEiv~ev~~~~~~~~~~~~~~~M~~~~~l~vPl~~d~~i 400 (408)
T d2hhva2 321 RMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVTLRVPLKVDYHY 400 (408)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCEEEEECSSEEEEEEEGGGHHHHHHHHHHHHHTSSCCSSCCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEECHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 87760011489999999999999999984489978999763105899778999999999999995476788807865044
Q ss_pred -------C
Q ss_conf -------9
Q 000711 482 -------S 482 (1338)
Q Consensus 482 -------s 482 (1338)
=
T Consensus 401 G~~W~e~k 408 (408)
T d2hhva2 401 GSTWYDAK 408 (408)
T ss_dssp ESSTTTCC
T ss_pred CCCHHHCC
T ss_conf 78967759
|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=30783.42 Aligned_cols=1 Identities=0% Similarity=-1.390 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~ 80 (408)
T d1n11a_ 1 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTN 80 (408)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHH
T ss_pred CCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHH
T ss_conf 98699999884899999999787899988999988999999868899999999885998877999899999999869977
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~ 160 (408)
T d1n11a_ 81 MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA 160 (408)
T ss_dssp HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCC
T ss_conf 99999874100123211122024555430332222222211001001456464289999875989999999976998886
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~ 240 (408)
T d1n11a_ 161 AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQ 240 (408)
T ss_dssp CCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 78767409999998599999999986588400457789971024320210455555432001221247789999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g 320 (408)
T d1n11a_ 241 EGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ 320 (408)
T ss_dssp TTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTT
T ss_pred HCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEECCCC
T ss_conf 08676754420022111112478997334543028489999999779965621023445302210058621355301333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~~~~~~~~~~~~~~~~~~ 400 (408)
T d1n11a_ 321 ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRM 400 (408)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHHCCCCSSCC----CCC
T ss_pred CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 32234689999999999986889999999987889988799998999999983999999999998736564560003668
Q ss_pred -------C
Q ss_conf -------9
Q 000711 482 -------S 482 (1338)
Q Consensus 482 -------s 482 (1338)
-
T Consensus 401 ~~~~~~~~ 408 (408)
T d1n11a_ 401 SFPETVDE 408 (408)
T ss_dssp CCCCCCCC
T ss_pred CCCHHCCC
T ss_conf 76410149
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=100.00 E-value=0 Score=30783.39 Aligned_cols=1 Identities=100% Similarity=0.204 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~a~iR~~FP~l~~~~~~~~~iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llg 80 (408)
T d1t3ia_ 1 PSLAATVRQDFPILNQEINGHPLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFIN 80 (408)
T ss_dssp CCHHHHHGGGCGGGSCEETTEECEECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 96278998758256666589986983185115799999999999998668987731519999999999999999999839
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 a~~~~~i~~~~~tt~~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~l~~~~ 160 (408)
T d1t3ia_ 81 ARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLL 160 (408)
T ss_dssp CSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHC
T ss_pred CCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHCC
T ss_conf 89821377505307898888764100226899889850354411211344433026825765420123320077764224
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~t~lv~i~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g~~~id~~~~~~D~~~~s~hK~~gp~G~g~l~v~~~ 240 (408)
T d1t3ia_ 161 SEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEE 240 (408)
T ss_dssp CTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTTCEEEEECHH
T ss_pred CCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEECCCEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHH
T ss_conf 89966999965554443358089876565214730453130104643224334678648861432357887411121033
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~~~~~~~ 320 (408)
T d1t3ia_ 241 ILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQ 320 (408)
T ss_dssp HHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHCCCCEECCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 45308965069854344455555557733543478578999999999999999708799999999877677665225764
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~~~~~~~~~~~~~iv~f~~~~~~~~~v~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~vRiS~~~ynt~~did~li~~L 400 (408)
T d1t3ia_ 321 LRLYGPNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSL 400 (408)
T ss_dssp EEEESCCGGGSCBCSEEEEEETTBCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCEEECCCCCCCHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 23468884446754189999589899999999966996996574225587886069960999799999999999999999
Q ss_pred -------C
Q ss_conf -------9
Q 000711 482 -------S 482 (1338)
Q Consensus 482 -------s 482 (1338)
+
T Consensus 401 ~~~~~~f~ 408 (408)
T d1t3ia_ 401 QATIRFFS 408 (408)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHC
T ss_conf 99999759
|
| >d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: 2-oxoisovalerate dehydrogenase (E1B), PP module species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=0 Score=30711.99 Aligned_cols=1 Identities=0% Similarity=-0.559 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
.
T Consensus 1 ~~~~p~~~~~p~p~~rp~~~~d~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~vrvld~~g~~~~~~~~~l~~e~l~~~y 80 (407)
T d1qs0a_ 1 NEYAPLRLHVPEPTGRPGCQTDFSYLRLNDAGQARKPPVDVDAADTADLSYSLVRVLDEQGDAQGPWAEDIDPQILRQGM 80 (407)
T ss_dssp CCSCCCCCCCCCCSCCTTSCCCGGGSCCCCTTCSCCCCTTCCGGGGHHHHTSCBCCBCTTSCBCSGGGSSCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 99898545799999999988885445568876679995568911244245670899899998998778998999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 r~M~~~R~~d~~~~~l~rqG~i~~~~~~~GqEA~~vg~~~aL~~~D~~f~~yR~~g~~larG~~~~~~~~e~~g~~~g~~ 160 (407)
T d1qs0a_ 81 RAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALALNRTDMCFPTYRQQSILMARDVSLVEMICQLLSNERDPL 160 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSCCCCCTTTHHHHHHHHHHSCTTSEEECCSSCHHHHHHTTCCHHHHHHHHHTCTTCTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999999999999669730668998849999999986797798982545799999987619999999862457877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~Gr~~~~h~~~~~~~~~~~s~~vg~q~p~AvG~A~a~k~~~~~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvifv~eN 240 (407)
T d1qs0a_ 161 KGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVN 240 (407)
T ss_dssp TTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 78875443355323200025653346623356677776516760101245655433201888999873057626999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 N~~aist~~~~~~~~~~~~~~ra~~~Gi~~~~VDGnD~~avy~a~~~A~e~aR~g~gP~lIE~~TyR~~gHs~sDD~~~Y 320 (407)
T d1qs0a_ 241 NQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKY 320 (407)
T ss_dssp CSEETTEEGGGGTTTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCSCSSTTCCGGGT
T ss_pred ECCCCCCCCHHHHCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCC
T ss_conf 02301364111200100688888861865278625439999999998889985389746997741018988765554345
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 R~~~E~~~w~~~DPI~rl~~~Li~~g~~se~e~~~i~~ei~~eV~~A~~~Ae~~~~~~~~p~P~~~~lf~~VY~e~p~~l 400 (407)
T d1qs0a_ 321 RPADDWSHFPLGDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQKEAEQYGTLANGHIPSAASMFEDVYKEMPDHL 400 (407)
T ss_dssp SCTTHHHHCTTCCHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCCCCSSGGGSSSSSSCCHHH
T ss_pred CCHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHH
T ss_conf 89999998883897999999999879999999999999999999999999987221036899699999845225999889
Q ss_pred ------C
Q ss_conf ------9
Q 000711 482 ------S 482 (1338)
Q Consensus 482 ------s 482 (1338)
-
T Consensus 401 ~eQ~~el 407 (407)
T d1qs0a_ 401 RRQRQEL 407 (407)
T ss_dssp HHHHHTC
T ss_pred HHHHHHC
T ss_conf 9999739
|
| >d1eu8a_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: D-maltodextrin-binding protein, MBP species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=30705.24 Aligned_cols=1 Identities=0% Similarity=-1.424 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~g~i~~~~~g~p~~~~~~~~~i~~F~~~~p~i~V~~~~~~~~~~~~~~~~~~~~~a~g~~PDi~~~~~~~~~~~~~~g 80 (407)
T d1eu8a_ 1 IEEGKIVFAVGGAPNEIEYWKGVIAEFEKKYPGVTVELKRQATDTEQRRLDLVNALRGKSSDPDVFLMDVAWLGQFIASG 80 (407)
T ss_dssp CCSSEEEEEECCSHHHHHHHHHHHHHHHHHSTTCEEEEEECCSSHHHHHHHHHHHHTTTCSSEEEEEEETTTHHHHHHHT
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCC
T ss_conf 97426999978976699999999999998886918999973684599999999999828999879998948899999879
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~l~dL~~~~~~~~~~~~~~~~~~~~~~~~~dG~~y~iP~~~~~~~~~yNkdl~~~~G~~~p~~T~de~~~~~~~l~~~~~ 160 (407)
T d1eu8a_ 81 WLEPLDDYVQKDNYDLSVFFQSVINLADKQGGKLYALPVYIDAGLLYYRKDLLEKYGYSKPPETWQELVEMAQKIQSGER 160 (407)
T ss_dssp CBCCSHHHHHHHTCCGGGBCHHHHHHHTEETTEECCEEEEEEECEEEEEHHHHHHTTCCSCCSBHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHCCHHHHHHCHHHHHHHHCCCCEEECCCCCHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 93338576553113255404889987513454230276301234554161255542157988899999999999873045
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~ 240 (407)
T d1eu8a_ 161 ETNPNFWGFVWQGKQYEGLVCDFVEYVYSNGGSLGEFKDGKWVPTLNKPENVEALQFMVDLIHKYKISPPNTYTEMTEEP 240 (407)
T ss_dssp TTCTTCEEEECCCSSSHHHHHHHHHHHHTTTCCSEEEETTEEEECTTCHHHHHHHHHHHHHHHTSCCSCGGGGTTCCHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 76775221234555544302446789984488611024677521469999999999999999705657632000001577
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~f~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~i~~~s~~~~~A~~fl~~l~s~e~ 320 (407)
T d1eu8a_ 241 VRLMFQQGNAAFERNWPYAWGLHNADDSPVKGKVGVAPLPHFPGHKSAATLGGWHIGISKYSDNKALAWEFVKFVESYSV 320 (407)
T ss_dssp HHHHHHTTCEEEEEECTHHHHHHTSTTCTTTTCEEEECCCBCTTSCCCCBEEEEEEEEBTTCSCHHHHHHHHHHHTSHHH
T ss_pred HHHHHHCCCEEEECCCCHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCEECCCEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 99998568745742572888765320145455534411125678654311304202676787549999999874002789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~eal~~~~~~ 400 (407)
T d1eu8a_ 321 QKGFAMNLGWNPGRVDVYDDPAVVSKSPHLKELRAVFENAVPRPIVPYYPQLSEIIQKYVNSALAGKISPQEALDKAQKE 400 (407)
T ss_dssp HHHHHHHTCCCBSBTTGGGSHHHHHHCTHHHHTHHHHHTCBCCCCCTTHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHCHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 99999851888662777739875611967999999997285278888789999999999999985999999999999999
Q ss_pred ------C
Q ss_conf ------9
Q 000711 482 ------S 482 (1338)
Q Consensus 482 ------s 482 (1338)
-
T Consensus 401 ~~~~l~~ 407 (407)
T d1eu8a_ 401 AEELVKQ 407 (407)
T ss_dssp HHHHHTC
T ss_pred HHHHHCC
T ss_conf 9999576
|
| >d1qhoa4 c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclodextrin glycosyltransferase species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]
Probab=100.00 E-value=0 Score=30701.25 Aligned_cols=1 Identities=0% Similarity=-0.493 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~v~Y~i~~drF~~gd~~~~~~~~~~~~~~~~~~~~~~~~gGd~~gi~~kLdyl~~LGv~~I~L~Pi~~~~~~ 80 (407)
T d1qhoa4 1 SSSASVKGDVIYQIIIDRFYDGDTTNNNPAKSYGLYDPTKSKWKMYWGGDLEGVRQKLPYLKQLGVTTIWLSPVLDNLDT 80 (407)
T ss_dssp CTTSCCTTCCEEEECGGGTCCSCGGGSSCGGGTTCBCTTSCSTTSBCCCCHHHHHHTHHHHHHHTCCEEEECCCEEECSS
T ss_pred CCCHHHCCCEEEEECHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf 97132057779996355506799877766555455577655667657848999998799999769988996965207765
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~gY~~~d~~~id~~~Gt~~d~k~Lv~~~H~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (407)
T d1qhoa4 81 LAGTDNTGYHGYWTRDFKQIEEHFGNWTTFDTLVNDAHQNGIKVIVDFVPNHSTPFKANDSTFAEGGALYNNGTYMGNYF 160 (407)
T ss_dssp CSSTTCCCTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEEEBTTBTTSTTTTCEEETTEEEECSS
T ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 67889988774012224777778998899999999866302113331201455677622222223676556676555555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~~~w~~~gvDGfR~D~~~~~~~~f~~~ 240 (407)
T d1qhoa4 161 DDATKGYFHHNGDISNWDDRYEAQWKNFTDPAGFSLADLSQENGTIAQYLTDAAVQLVAHGADGLRIDAVKHFNSGFSKS 240 (407)
T ss_dssp SCTTTCCBCCSCBCSCTTCHHHHHHSBCEETTTEEEEEBCTTSHHHHHHHHHHHHHHHHTTCCEEEETTGGGSCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 65555422246777786645342234456776655700332025678999876777865315643101101251467899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~i~~~~~~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 320 (407)
T d1qhoa4 241 LADKLYQKKDIFLVGEWYGDDPGTANHLEKVRYANNSGVNVLDFDLNTVIRNVFGTFTQTMYDLNNMVNQTGNEYKYKEN 320 (407)
T ss_dssp HHHHHHHHCCCEEEECCCCCCTTSTTHHHHHHHHHHSSCEEBCHHHHHHHHHHHTSCSSCHHHHHHHHHHHHHHCTTGGG
T ss_pred HHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 99999742685345565588735667777631135665412102577888887640220146788999875201345202
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~f~~nHD~~R~~~~~~~~~~~~~a~a~ll~~pGiP~iyyGdE~G~~g~~d~~~r~~~~~~~~~~~~~~~~~~L~~lR~ 400 (407)
T d1qhoa4 321 LITFIDNHDMSRFLSVNSNKANLHQALAFILTSRGTPSIYYGTEQYMAGGNDPYNRGMMPAFDTTTTAFKEVSTLAGLRR 400 (407)
T ss_dssp CEECSCCTTSCCHHHHCCCHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCSTTTTCCCCCCCCTTSHHHHHHHHHHHHHH
T ss_pred HCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 12000368854401124899999999999997279868863874397899895410137866688599999999999985
Q ss_pred ------C
Q ss_conf ------9
Q 000711 482 ------S 482 (1338)
Q Consensus 482 ------s 482 (1338)
=
T Consensus 401 ~~paLr~ 407 (407)
T d1qhoa4 401 NNAAIQY 407 (407)
T ss_dssp HCHHHHH
T ss_pred HCHHHCC
T ss_conf 0984474
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=30632.76 Aligned_cols=1 Identities=0% Similarity=0.637 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 80 (406)
T d1u2za_ 1 SSTFVDWNGPCLRLQYPLFDIEYLRSHEIYSGTPIQSISLRTNSPQPTSLTSDNDTSSVTTAKLQSILFSNYMEEYKVDF 80 (406)
T ss_dssp CCBSSCTTSCEEECCSCCBCHHHHHHCCCCCCCCCCGGGCCC------------------EEEEECSSCTTCEEEEECCS
T ss_pred CCCCCCCCCCCCCCCCCEECHHHHHHHHHCCCCCCCCCCEECCCCCHHHHCCCCCCCCCCEEEEEECCCCCCEEEEEEEC
T ss_conf 97532587743465553020665310553379877772000477771443068876898605887324666103788850
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~p~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~i~~~~~~~~~~~l~~~~ 160 (406)
T d1u2za_ 81 KRSTAIYNPMSEIGKLIEYSCLVFLPSPYAEQLKETILPDLNASFDNSDTKGFVNAINLYNKMIREIPRQRIIDHLETID 160 (406)
T ss_dssp SSCCSSSCHHHHHHHHHHHHHHTTCCTTHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHTTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 56524569899999999999986488489999999999999998742799999999999999999866615988876267
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~i~~~~y~r~v~p~~~~L~~Y~~fs~~vYGEl~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~ 240 (406)
T d1u2za_ 161 KIPRSFIHDFLHIVYTRSIHPQANKLKHYKAFSNYVYGELLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGC 240 (406)
T ss_dssp EEEHHHHHHHHHHHHHHHTGGGGGGGCSCCSSGGGCCCCBCHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCC
T ss_conf 88889999998886446036886776266789977403478899999999838999998996789875999999997699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~ 320 (406)
T d1u2za_ 241 ALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKIL 320 (406)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 76999848999999999999987555555303566520334404221654224545643999733167367999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 r~LKPGGrIVs~~~~~~~~~~it~r~~~~~~~il~v~~~~~~~~sVSWt~~~v~yyl~tv~~~i~~~~f~~~~~~R~~r~ 400 (406)
T d1u2za_ 321 QTAKVGCKIISLKSLRSLTYQINFYNVENIFNRLKVQRYDLKEDSVSWTHSGGEYYISTVMEDVDESLFSPAARGRRNRG 400 (406)
T ss_dssp TTCCTTCEEEESSCSSCTTCCCCSSSTTCGGGGEEEEEEECCTTCBTTBSSCCEEEEEEECSSCCGGGSCCC------C-
T ss_pred HHCCCCCEEEEECCCCCCCHHHHHHCCCCCHHCCCCHHHCCCCCCCEEECCCCCEEHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 72699828999114678740145520353000033132145336633466987653739998888721462113553347
Q ss_pred -----C
Q ss_conf -----9
Q 000711 482 -----S 482 (1338)
Q Consensus 482 -----s 482 (1338)
.
T Consensus 401 ~P~kyt 406 (406)
T d1u2za_ 401 TPVKYT 406 (406)
T ss_dssp --CCBC
T ss_pred CCCCCC
T ss_conf 888889
|
| >d1itka1 a.93.1.3 (A:18-423) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Heme-dependent peroxidases superfamily: Heme-dependent peroxidases family: Catalase-peroxidase KatG domain: Catalase-peroxidase KatG species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=100.00 E-value=0 Score=30632.46 Aligned_cols=1 Identities=0% Similarity=-0.227 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~p~~~~~~~l~~~~~~~~p~~~~~~y~~~~~~~d~~~~~~di~~l~~~~~~~wpaD~g~~gP~lVRlAWHs 80 (406)
T d1itka1 1 KRPKSNQDWWPSKLNLEILDQNARDVGPVEDDFDYAEEFQKLDLEAVKSDLEELMTSSQDWWPADYGHYGPLFIRMAWHS 80 (406)
T ss_dssp CCCCCHHHHCTTSCCTHHHHTTSCCCSSCCTTCCHHHHHHHCCHHHHHHHHHHHHTCCBTTBCCGGGCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99986566586444773245687667989988678999876449999999999974433357544466313676555553
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 AgTYR~sD~RGGanGariRfaPe~sW~~N~~LdkAr~lLepIK~kyg~~IS~ADLivLAG~vAiE~~ggp~i~f~~GR~D 160 (406)
T d1itka1 81 AGTYRTADGRGGAAGGRQRFAPINSWPDNANLDKARRLLLPIKQKYGQKISWADLMILAGNVAIESMGFKTFGYAGGRED 160 (406)
T ss_dssp HTTCCTTTCCCSSTTCGGGSTTGGGCGGGTTHHHHHHHTHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCCCSCCCBCCCC
T ss_pred HCCEECCCCCCCCCCCEECCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHEEHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 10011257888998762575666266777422999999999998627355443042000155564426863224557765
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 a~~~~~d~~~g~~~e~~~d~~~~~~~~l~~pl~a~~~~liyv~Peg~~g~~d~~~~a~~lrd~f~rMgl~d~E~VALigG 240 (406)
T d1itka1 161 AFEEDKAVNWGPEDEFETQERFDEPGEIQEGLGASVMGLIYVNPEGPDGNPDPEASAKNIRQTFDRMAMNDKETAALIAG 240 (406)
T ss_dssp CSSCCTTCCCCSCSSTTCCCSCSSTTCCCTTCSCSSTTCSSSCTTCGGGCCCHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHC
T ss_conf 55655554557655656666677655555430013235555688665677884115899999999824881999998750
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~htlG~~hg~~~~~~~~g~~Pe~~~~~~~g~g~~~~~~~g~g~~~~~sG~~G~wT~~p~~~~N~yF~~Ll~~~w~~~~s~ 320 (406)
T d1itka1 241 GHTFGKVHGADDPEENLGPEPEAAPIEQQGLGWQNKNGNSKGGEMITSGIEGPWTQSPTEWDMGYINNLLDYEWEPEKGP 320 (406)
T ss_dssp HTTSCEECBSSCHHHHBCCCGGGSCGGGTTCCCCBCC-------CBSSSCCEESSSSTTSCSSHHHHHHHHSCEEEEECT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEECC
T ss_conf 24246335788743357878655544346764457888775765545775544455434345612100135565410036
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~g~~~~~~~~~~~~~~~pda~~~~~~~~~~ml~tDlaL~~Dp~~R~iaE~YA~d~e~F~~DFa~Aw~KL~~~D~gp~~ry 400 (406)
T d1itka1 321 GGAWQWAPKSEELKNSVPDAHDPDEKQTPMMLTTDIALKRDPDYREVMETFQENPMEFGMNFAKAWYKLTHRDMGPPERF 400 (406)
T ss_dssp TSCEEEEESSSTTTTCEECSSCTTCEECCCBCHHHHHHHHSHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTTSCSGGGC
T ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 77437526776544577756566775577503667876009878999999960999999999999999972678983345
Q ss_pred -----C
Q ss_conf -----9
Q 000711 482 -----S 482 (1338)
Q Consensus 482 -----s 482 (1338)
-
T Consensus 401 ~gp~~p 406 (406)
T d1itka1 401 LGPEVP 406 (406)
T ss_dssp BSTTCC
T ss_pred CCCCCC
T ss_conf 799999
|
| >d1mwva1 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Heme-dependent peroxidases superfamily: Heme-dependent peroxidases family: Catalase-peroxidase KatG domain: Catalase-peroxidase KatG species: Burkholderia pseudomallei [TaxId: 28450]
Probab=100.00 E-value=0 Score=30632.45 Aligned_cols=1 Identities=0% Similarity=0.271 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~wp~~~~~~~l~~~~~~~~p~~~~~~y~~~~~~lD~~alk~di~~l~~~s~d~wpaD~G~ygp~lVRlAWHsA 80 (406)
T d1mwva1 1 NGTSNRDWWPNQLDLSILHRHSSLSDPMGKDFNYAQAFEKLDLAAVKRDLHALMTTSQDWWPADFGHYGGLFIRMAWHSA 80 (406)
T ss_dssp CCCCHHHHCTTSCCGGGGSCSCGGGCCSCTTCCHHHHHHTSCHHHHHHHHHHHHTCCBTTBCCGGGCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99886666831138741356876569898887789998750599999999999745321475534662168998888763
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 gTYR~~D~RGGanGg~iRfaPe~sW~~N~~Ldkar~lLepIK~ky~~~IS~ADLivLAG~vAiE~~Gg~~i~f~~GR~d~ 160 (406)
T d1mwva1 81 GTYRTADGRGGAGEGQQRFAPLNSWPDNANLDKARRLLWPIKQKYGRAISWADLLILTGNVALESMGFKTFGFAGGRADT 160 (406)
T ss_dssp TTCCTTTCCCSSTTCGGGSTTGGGCGGGTTHHHHHHHTHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCCCCCCCBCCCCC
T ss_pred CCCCCCCCCCCCCCCEECCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHCCCCCCCCCCCCCC
T ss_conf 24104579889987615775443578754679999999999997477754233256620788987369813777676664
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Plaa~~~gliyvnpeg~~g~pd~~~~a~~lrd~f~rMglnd~E~vAL 240 (406)
T d1mwva1 161 WEPEDVYWGSEKIWLELSGGPNSRYSGDRQLENPLAAVQMGLIYVNPEGPDGNPDPVAAARDIRDTFARMAMNDEETVAL 240 (406)
T ss_dssp SSCCCCCCCSCSSTTCCTTSTTCSEETTTEECTTCCSSSTTCSSSCTTSGGGCCCHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 33223556644443454456544566753334764444456666687645688970235899999987606870889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 i~G~HtlG~~hg~~~~~~~g~~pe~~~~~~~g~gw~~~~~~g~~~~~~~sg~eG~wT~~P~~~dN~yF~~Ll~~~we~~~ 320 (406)
T d1mwva1 241 IAGGHTFGKTHGAGPASNVGAEPEAAGIEAQGLGWKSAYRTGKGADAITSGLEVTWTTTPTQWSHNFFENLFGYEWELTK 320 (406)
T ss_dssp HHHHTTSCBCCBSSCGGGBCCCGGGSCGGGTTCCCCBCSTTSSGGGCBSSSCCCBCCSCTTSCCSHHHHHHHHSCEEEEE
T ss_pred HHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHCCCCEEEC
T ss_conf 86432211135788510047754567510025666666554577766778873676799761116888656447645520
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 s~~g~~q~~~~~~~~~~pda~~~s~~~~~~ml~tDlal~~Dp~~R~iaE~YA~d~e~F~~dFa~AW~KLm~~Dmgp~~~y 400 (406)
T d1mwva1 321 SPAGAHQWVAKGADAVIPDAFDPSKKHRPTMLTTDLSLRFDPAYEKISRRFHENPEQFADAFARAWFKLTHRDMGPRARY 400 (406)
T ss_dssp CTTCCEEEEETTCCSCEECSSCTTCEECCEECHHHHHHHHSHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTTSCSGGGC
T ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCHHC
T ss_conf 45655245645755577766588777476402443333029888999999962999999999999999974688980202
Q ss_pred -----C
Q ss_conf -----9
Q 000711 482 -----S 482 (1338)
Q Consensus 482 -----s 482 (1338)
-
T Consensus 401 ~g~~~p 406 (406)
T d1mwva1 401 LGPEVP 406 (406)
T ss_dssp BSTTCC
T ss_pred CCCCCC
T ss_conf 699999
|
| >d1ei6a_ c.76.1.4 (A:) Phosphonoacetate hydrolase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Alkaline phosphatase-like superfamily: Alkaline phosphatase-like family: Phosphonoacetate hydrolase domain: Phosphonoacetate hydrolase species: Pseudomonas fluorescens [TaxId: 294]
Probab=100.00 E-value=0 Score=30632.42 Aligned_cols=1 Identities=0% Similarity=0.005 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~vi~I~iD~l~~~~l~~~~~~~~TPnid~La~~G~~f~~~~~~~~~c~PsrasllTG~yp~~hG 80 (406)
T d1ei6a_ 1 TNLISVNSRSYRLSSAPTIVICVDGCEQEYINQAIQAGQAPFLAELTGFGTVLTGDCVVPSFTNPNNLSIVTGAPPSVHG 80 (406)
T ss_dssp CCEEEETTEEEECCSSCEEEEECTTCCHHHHHHHHHTTSCHHHHHGGGTSEEEEEECCSSCCHHHHHHHHHHTSCHHHHC
T ss_pred CCEEEECCCCCCCCCCCEEEEEECCCCHHHHHCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCHHHCC
T ss_conf 96484786104678998899997899978874005557991899999689348322049971589999999678988879
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (406)
T d1ei6a_ 81 ICGNFFFDQETQEEVLMNDAKYLRAPTILAEMAKAGQLVAVVTAKDKLRNLLGHQLKGICFSAEKADQVNLEEHGVENIL 160 (406)
T ss_dssp CCSSEEEETTTTEEEECCSGGGCCSCCHHHHHHHTTCCEEEEESSHHHHHHHTTTCCSEEEESTTCSSCCHHHHSCCCHH
T ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 57775446554410100332123456544311123465302114565645555430321456567786523444543221
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~i~~l~~~~~~~~~~~d 240 (406)
T d1ei6a_ 161 ARVGMPVPSVYSADLSEFVFAAGLSLLTNERPDFMYLSTTDYVQHKHAPGTPEANAFYAMMDSYFKRYHEQGAIVAITAD 240 (406)
T ss_dssp HHHTCCCCCSSSTHHHHHHHHHHHHHHHTTCCSEEEEECCCHHHHHSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 10233222123332102444432220247884201123433334456899889999999999999999867966999934
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (406)
T d1ei6a_ 241 HGMNAKTDAIGRPNILFLQDLLDAQYGAQRTRVLLPITDPYVVHHGALGSYATVYLRDAVPQRDAIDFLAGIAGVEAVLT 320 (406)
T ss_dssp CCCEECBCTTSCBCEEEHHHHHHHHHCTTSEEEECTTSCTTCCBGGGCBSEEEEEECTTSCHHHHHHHHHTSTTEEEEEE
T ss_pred CCCCCCCCCCCCCHHHHCCCCCHHHCCCCCCCCCCCCCCCCEEECCCCCCHHHHHCCCHHHHHHHHHHHHHCCCHHHHCC
T ss_conf 54345675223320232144201110110000245422210000122320234313327899999998752365223304
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~~~~~~~~~~~~igdii~~sd~g~~lg~~~~~~~~s~~~~~~~~hGg~~e~~VPlIi~~P~~~~~~~~~i~~~Di~d~ 400 (406)
T d1ei6a_ 321 RSQACQRFELPEDRIGDLVVLGERLTVLGSAADKHDLSGLTVPLRSHGGVSEQKVPLIFNRKLVGLDSPGRLRNFDIIDL 400 (406)
T ss_dssp HHHHHHHHTCCGGGSCSEEEEECTTCEEESCTTTCBGGGCCSCCEECCSGGGCEEEEEESSCBCCCC--CCCBGGGHHHH
T ss_pred HHHHHHHCCCCCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEECHHHH
T ss_conf 98999973999787466999956996877455445433467767565651147308799558656777884325061887
Q ss_pred -----C
Q ss_conf -----9
Q 000711 482 -----S 482 (1338)
Q Consensus 482 -----s 482 (1338)
+
T Consensus 401 ~~~~~~ 406 (406)
T d1ei6a_ 401 ALNHLA 406 (406)
T ss_dssp HHHCBC
T ss_pred HHHHCC
T ss_conf 763039
|
| >d1ub2a1 a.93.1.3 (A:21-426) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Heme-dependent peroxidases superfamily: Heme-dependent peroxidases family: Catalase-peroxidase KatG domain: Catalase-peroxidase KatG species: Synechococcus sp. pcc 7942 [TaxId: 1140]
Probab=100.00 E-value=0 Score=30631.69 Aligned_cols=1 Identities=0% Similarity=0.271 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~wp~~~~~~~l~q~~~~~~p~~~~~~y~~~~~~ld~a~k~Dl~~l~~~s~~~wpaD~G~ygP~lVRlAWhsAgTYR 80 (406)
T d1ub2a1 1 STAEWWPKALNLDILSQHDRKTNPMGPDFNYQEEVQKLDAALKQDLQALMTDSQDWWPADWGHYGGLMIRLTWHAAGTYR 80 (406)
T ss_dssp CTTSSCTTSCCGGGGSCSCTTTCCSCTTCCHHHHHTTSCSTTHHHHHHHTTCCCTTSCCGGGCCHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 97555887768521015887679899997889999999999999999997455234755457621377865554014321
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~sD~RGGanGgriRfaP~~sW~~N~~LdkAr~lL~pIK~ky~~~IS~ADLivLAG~vAiE~agg~ti~f~~GR~Da~~~~ 160 (406)
T d1ub2a1 81 IADGRGGAGTGNQRFAPLNSWPDNTNLDKARRLLWPIKQKYGNKLSWADLIAYAGTIAYESMGLKTFGFAFGREDIWHPE 160 (406)
T ss_dssp TTTCCCSSTTCGGGSTTGGGCGGGTTHHHHHHHTHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCCCCCCCBCCCCCSSCC
T ss_pred CCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 67898899877446822304566318899999998887642876531137776129999873498335677766666776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~dv~~g~~~e~l~~~~~~~~~~~~~~~l~~pl~a~~~~liyvnP~g~~g~pd~~~~a~~ir~~f~rM~mnd~E~vAL~aG 240 (406)
T d1ub2a1 161 KDIYWGPEKEWFPPSTNPNSRYTGDRELENPLAAVTMGLIYVNPEGVDGNPDPLKTAHDVRVTFARMAMNDEETVALTAG 240 (406)
T ss_dssp TTCCCCSCSSSSCCSSSTTCSEETTTEECTTCCSSSTTCSSCCTTSBTTBCCHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 55455554455788767544467754322465420157311177534678974555788655677753788998642153
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~ht~Gk~hg~~~~~~~g~~p~g~~~e~~g~~~~n~~~~g~g~~t~tSg~eg~wt~~p~~~dn~yF~~ll~~~~W~~~ks~ 320 (406)
T d1ub2a1 241 GHTVGKCHGNGNAALLGPEPEGADVEDQGLGWINKTQSGIGRNAVTSGLEGAWTPHPTQWDNGYFAVCSLNYDWELKKNP 320 (406)
T ss_dssp HHTSCCBCBCSCSTTBCCCGGGSCGGGTTCCSCBCSSCCSGGGCBSSSCCBBSSSCTTSCSSTTTTTTTSSSCEEEEECT
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHCCCCC
T ss_conf 31002136777501237655565410067766777773646666688888777656443467412333205640102453
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~ga~q~~~~~~~~~~~~~~~~d~s~~~~~~mt~tDLal~~Dp~~R~iaE~Ya~d~e~F~~dFa~AW~KL~~~Dmgp~~~~ 400 (406)
T d1ub2a1 321 AGAWQWEPINPREEDLPVDVEDPSIRRNLVMTDADMAMKMDPEYRKISERFYQDPAYFADVFARAWFKLTHRDMGPKARY 400 (406)
T ss_dssp TSCEEEEESSCCGGGSCBCSSCTTSBCCBCBCHHHHHHHHSHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTTSCSGGGC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCHHHC
T ss_conf 30114455675323477755477777577503567763108878999999971999999999999999971677976531
Q ss_pred -----C
Q ss_conf -----9
Q 000711 482 -----S 482 (1338)
Q Consensus 482 -----s 482 (1338)
-
T Consensus 401 ~g~~~p 406 (406)
T d1ub2a1 401 IGPDVP 406 (406)
T ss_dssp BSTTCC
T ss_pred CCCCCC
T ss_conf 799999
|
| >d2ayia1 e.60.1.1 (A:3-408) Aminopeptidase T {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Thermophilic metalloprotease-like superfamily: Thermophilic metalloprotease-like family: Thermophilic metalloprotease (M29) domain: Aminopeptidase T species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=30628.32 Aligned_cols=1 Identities=0% Similarity=-0.161 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~L~k~A~llV~~~l~vqkGe~VlI~a~~~~~~Lvral~e~A~~~GA~pv~v~~~d~~i~r~~~~~a~~e~l~~~p~ 80 (406)
T d2ayia1 1 AFKRNLEKLAELAIRVGLNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTVIYGDQELARKRLALAPEEGLDKAPA 80 (406)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEECCHHHHHHHHHHSCTTCTTCCCH
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCHHHHHHCCH
T ss_conf 96799999999999971268999989997166569999999999998699738996067699999996399988743624
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~a~i~I~~~np~~l~~vdp~ki~~~~ka~~~~~~~~~~~~~~~~~~W~i~~~P~~~~A~~~~~~l~~ 160 (406)
T d2ayia1 81 WLYEGMARAFREGAARLAVSGSDPKALEGLPPEKVGRAQKANARAYKPALEAITEFVTNWTIVPFAHPGWARAVFPGLPE 160 (406)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSSCBCBEECCCTTTHHHHCCCSCH
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHCCCCCH
T ss_conf 46889999997189289961698520126996899999998899879999998536566399975782177661789767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~e~~~~l~d~if~~~~ld~~dp~~~w~~~~~~l~~~~~~L~~~~~~~~~~~~~GTDL~~~i~~~~~w~~~~~~~~~g~~~ 240 (406)
T d2ayia1 161 EEAVRRLWEAIFQATRADQEDPIAAWEAHNRALHEKVAYLNARRFHALHFKGPGTDLVVGLAEGHLWQGGATATKGGRLC 240 (406)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEEECCTTBCCEESSCCCSSSCCC
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 89999999999976346651079999999999999999985165148996389369999945884015887642278767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~NlP~GEvftaP~e~svnG~i~~d~~~~~~g~l~~~i~l~f~~G~vv~~~~~~~~~~l~~~~~~d~~a~~lgE~~ig~n 320 (406)
T d2ayia1 241 NPNLPTEEVFTAPHRERVEGVVRASRPLALGGTLVEGIFARFERGFAVEVRAEKGEEVLRRLLDTDEGARRLGEVALVPA 320 (406)
T ss_dssp CSBSSCCCEEECCCTTCEEEEEECSSCEEETTEEEBSCEEEEETTEEEEEECSBCHHHHHHHTTSSSGGGSEEEEECCCT
T ss_pred CCCCCCCCEEEEECCCCEEEEEECCCCCCCCCEECCCCEEEEECCEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEEECC
T ss_conf 68899832585020484211998045454433303473799948879997557649999987624867636788876047
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~~~~~~~~~~n~L~DE~gt~Hia~G~~Y~~~~~g~~~~~~~~~~g~n~s~~H~D~~~~~~~~~~dgv~~dG~~~~i~~ 400 (406)
T d2ayia1 321 DNPIAKTGLVFFDTLFDENAASHIAFGQAYQENLEGRPSGEAFRKRGGNESLVHVDWMIGSEEMDVDGLYEDGTRTPLMR 400 (406)
T ss_dssp TSHHHHHTCCCCCHHHHHTTSCEEEEECCCGGGBCC---CCSHHHHTCCCCSCEEEEECCCTTCEEEEECTTSCEEEEEE
T ss_pred CCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCEEEEEEEEECCCEEEEEE
T ss_conf 88540345111330587478604766876411134788756763079806644786713887178999984891889988
Q ss_pred -----C
Q ss_conf -----9
Q 000711 482 -----S 482 (1338)
Q Consensus 482 -----s 482 (1338)
-
T Consensus 401 ~G~f~i 406 (406)
T d2ayia1 401 RGRWVV 406 (406)
T ss_dssp TTEECC
T ss_pred CCEEEC
T ss_conf 989969
|
| >d3bmva4 c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase {Thermoanaerobacterium [TaxId: 28895]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclodextrin glycosyltransferase species: Thermoanaerobacterium [TaxId: 28895]
Probab=100.00 E-value=0 Score=30622.73 Aligned_cols=1 Identities=0% Similarity=-0.460 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~~~~viY~i~~drF~~g~~~~d~~~~~~~~~~~~~~~~~gGdl~Gi~~kLd~~YLk~LGv~~I~L~Pi~ 80 (406)
T d3bmva4 1 ASDTAVSNVVNYSTDVIYQIVTDRFVDGNTSNNPTGDLYDPTHTSLKKYFGGDWQGIINKINDGYLTGMGVTAIWIPQPV 80 (406)
T ss_dssp CCTTSTTCTTCCTTCCEEECCGGGTCCCCGGGSCCGGGBCTTSCSTTSBCCCCHHHHHHHHHTSTTGGGTCCEEEECCCE
T ss_pred CCCCCCCCCCCCCCCEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCEEEECCCC
T ss_conf 98766678888753708996123306899777878876577777657667858999987448888987597789979753
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~gY~~~d~~~vdp~~Gt~~dfk~LV~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~ 160 (406)
T d3bmva4 81 ENIYAVLPDSTFGGSTSYHGYWARDFKRTNPYFGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYD 160 (406)
T ss_dssp EECCCCEEETTTEEECSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEECCSSCTTSTTTTCEEE
T ss_pred CCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHCCCCCCCC
T ss_conf 56544567777789712127665235456844461899999999997436431365201566566522012034675356
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~~~~~giDGfR~D~~~~~~~~~~ 240 (406)
T d3bmva4 161 NGTLLGGYTNDTNGYFHHYGGTDFSSYEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVWLDMGIDGIRLDAVKHMPFGWQ 240 (406)
T ss_dssp TTEEEECSTTCTTCCBCCSCBCCCSSHHHHHHSBSTTEEEBCTTSHHHHHHHHHHHHHHHHTTCCEEEESCGGGSCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
T ss_conf 87411466545566434556764445666311245554210226689999999887777530777532245444632568
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (406)
T d3bmva4 241 KNFMDSILSYRPVFTFGEWFLGTNEIDVNNTYFANESGMSLLDFRFSQKVRQVFRDNTDTMYGLDSMIQSTASDYNFIND 320 (406)
T ss_dssp HHHHHHHHHHSCCEEEECCCCCTTCCCHHHHHHHHHSSSEEBCHHHHHHHHHHHTSCSSCHHHHHHHHHHHHHHCTTGGG
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHH
T ss_conf 99988888753212334333455100022110247776500122023788876405740267789987620013443344
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~fl~nHD~~R~~~~~~~~~~~~a~~~~lt~pG~P~IyyGdE~g~~g~~dp~~r~~~~~~~~~~~~~~~~~~Li~lRk~ 400 (406)
T d3bmva4 321 MVTFIDNHDMDRFYNGGSTRPVEQALAFTLTSRGVPAIYYGTEQYMTGNGDPYNRAMMTSFNTSTTAYNVIKKLAPLRKS 400 (406)
T ss_dssp CEECSCCSSSCCSCCSSCSHHHHHHHHHHHHSSSEEEEETTGGGTCCCCSTTGGGCCCCCCCTTSHHHHHHHHHTTHHHH
T ss_pred HCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCEEECCHHHCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 32566677646660688799999999999971797777657653868998824440489877896999999999999863
Q ss_pred -----C
Q ss_conf -----9
Q 000711 482 -----S 482 (1338)
Q Consensus 482 -----s 482 (1338)
=
T Consensus 401 ~paLry 406 (406)
T d3bmva4 401 NPAIAY 406 (406)
T ss_dssp CHHHHH
T ss_pred CHHHCC
T ss_conf 944159
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=0 Score=30560.48 Aligned_cols=1 Identities=0% Similarity=-0.992 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~l~~~D~ei~~~i~~e~~rq~~~l~LiaSEN~~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~ 80 (405)
T d1kl1a_ 1 MKYLPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQ 80 (405)
T ss_dssp CCHHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHCHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 93155549999999999999997691586067767899999856752475768899964607762299999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 lF~a~~anVqp~SGs~An~av~~all~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~l~~~a~ 160 (405)
T d1kl1a_ 81 LFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKAR 160 (405)
T ss_dssp HHCCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHH
T ss_pred HHCCCCCEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCHHCCCCCHHHHHHHHH
T ss_conf 83999414414676588999999844899878873035566445676223364588877732313025313999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~kPklIi~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~~aDvvt~tThKtlrGPrgg~I~~~~ 240 (405)
T d1kl1a_ 161 LHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILCQE 240 (405)
T ss_dssp HHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSCEEEEECH
T ss_pred HHCCCEEEECCCCCCCCCCHHHHHHHHHHHCCEEECCHHHHHHHHHHHHCCCHHHHHHHEECCCCCCCCCCCCCEEEECC
T ss_conf 62765377523146665586999998764198786035667665443126984652110323355334677773587500
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~i~~avfPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~G~~vv~ggTd~H~vlvdl~~~ 320 (405)
T d1kl1a_ 241 QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLVSGGTDNHLLLVDLRPQ 320 (405)
T ss_dssp HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGG
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEECCCCCC
T ss_conf 35777776508653468415678899999998738388999999999888999998648943435887664563243446
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~~~~~~~~~~~ir~~V 400 (405)
T d1kl1a_ 321 QLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNVGSEQALEEARQRV 400 (405)
T ss_dssp TCCHHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCEEECCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 77499999999980959767869899999998872265688998589988999999999999996589679999999999
Q ss_pred ----C
Q ss_conf ----9
Q 000711 482 ----S 482 (1338)
Q Consensus 482 ----s 482 (1338)
-
T Consensus 401 ~~L~~ 405 (405)
T d1kl1a_ 401 AALTD 405 (405)
T ss_dssp HHHHC
T ss_pred HHHHC
T ss_conf 99639
|
| >d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Proton glutamate symport protein superfamily: Proton glutamate symport protein family: Proton glutamate symport protein domain: Proton glutamate symport protein species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=30557.66 Aligned_cols=1 Identities=0% Similarity=-1.024 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 l~~rili~lv~Gi~~G~~~~~~~~~~~~~~~l~~~g~lFi~lL~m~v~PLIf~sii~gi~~L~~~~~gkl~~~ti~~~l~ 80 (405)
T d2nwwa1 1 VLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLL 80 (405)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTTTHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTCSCTTTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHH
T ss_conf 98899999999999999972222127899999989999999999999999999999999745501002089999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 tt~iA~~igl~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~l~~~iP~Ni~~al~~~~~l~vi~fail~Gial~~~~~~ 160 (405)
T d2nwwa1 81 TSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNS 160 (405)
T ss_dssp HHHHHHHHHHHHHHHSCSCCCCCCCCCCCCCCCCCCCCHHHHHGGGSCSCHHHHHHSCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999860133322000000014311001899999705587899964678630356788889999985022
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~l~~~~~~l~~v~~kii~~im~laPigvf~l~a~~~~~~g~~~l~~l~~~~~~~~~~~~l~~~~~~~i~~ 240 (405)
T d2nwwa1 161 ENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLL 240 (405)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 00345667889999999999999999898887778889999998753334555567899999999999999888889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~p~~~~~~~~~~~~~Af~T~SS~atlP~~~~~~~~~gv~~~i~~fvlPlgatin~~G~a~~~~~~~~f~a~~~g~ 320 (405)
T d2nwwa1 241 KIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVCTFFIANALGS 320 (405)
T ss_dssp HTTTCCHHHHHHHHHHHHHHHHHHCCTGGGHHHHHHHHHTTTCCTTTHHHHTTTTSSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHCCCCHHHHHHHCCCHHHEEEECCCCCCCCHHHHHHHHHCCCCCCCCCEECCCCHHEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 98289848884322310421200166556617899999975999352010236302100364124899999999987197
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~l~~~~~~~~~~~~~l~s~g~~gvPg~~~v~~~~vl~~~glP~~~~~~~~~i~li~~id~l~D~~rT~~Nv~gd~~~a~i 400 (405)
T d2nwwa1 321 HLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAI 400 (405)
T ss_dssp CCCSSTTHHHHHHHHHHHHTTSSCTTHHHHHHHHHHHHHTCCTTSHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHE
T ss_conf 99989999999999999986178616799999999998699886410565888887498550550898828776588841
Q ss_pred ----C
Q ss_conf ----9
Q 000711 482 ----S 482 (1338)
Q Consensus 482 ----s 482 (1338)
-
T Consensus 401 v~k~e 405 (405)
T d2nwwa1 401 VAKTE 405 (405)
T ss_dssp HHHHC
T ss_pred EECCC
T ss_conf 33579
|
| >d1h6za3 d.142.1.5 (A:1-405) Pyruvate phosphate dikinase, N-terminal domain {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Pyruvate phosphate dikinase, N-terminal domain domain: Pyruvate phosphate dikinase, N-terminal domain species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=0 Score=30555.77 Aligned_cols=1 Identities=0% Similarity=-1.157 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~lVGGK~AnLgel~~~GipVP~GFvITt~Ay~~Fl~~n~L~~~i~~~i~~~l~~~~~~~ 80 (405)
T d1h6za3 1 VAKKWVYYFGGGNADGNKNMKELLGGKGANLAEMVNLGIPVPPGFTITTEACKTYQETETIPQEVADQVRENVSRVEKEM 80 (405)
T ss_dssp CCCCCEEEECSSSCSCCTTCHHHHHHHHHHHHHHHHTTCCCCCEEEECHHHHTTTTTSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99747997399865578455750568899899999786999998886299999999738976889999999997664776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 160 (405)
T d1h6za3 81 GAKFGDPANPLLFSVRSGAAASMPGMMDTVLNLGLNKVTVDAWVRRAPRLERFVYDSYRRFITMYADIVMQVGREDFEEA 160 (405)
T ss_dssp CCBTTCTTSBCCEEEEESCTTC-----CCCCSBSCCHHHHHHHGGGCGGGHHHHHHHHHHHHHHHHHHHHCCCSTTTSTT
T ss_pred HHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 66523543115553023210122100455666665456689998742550566899999999763011246305678898
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~v~~S~~~~~a~~yr~~~~~~~~~~~~ 240 (405)
T d1h6za3 161 LSRMKERRGTKFDTDLTASDLKELCDGYLELFELKTGCSFPQDPVMQLFAAIKAVFRSWGNPRATIYRRMNNITGLLGTA 240 (405)
T ss_dssp THHHHHHHSCSCGGGCCHHHHHHHHHTTHHHHHHHSSSCCCCCHHHHHHHHHHHHHHTTTCTTTTTHHHHSCCCSCCCCC
T ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHH
T ss_conf 88888751651124572888887888999866541387541054677678888987620572377778761754113331
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~v~~~~~~~~~~sgv~~t~~~~tG~~~~~~~~~~~g~~~~vv~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (405)
T d1h6za3 241 VNVQAMVFGNINDRSATGVAFSRSPSTGENFFFGEYLVNAQGEDVVAGIRTPQQINHSLSLRWAKAHGVGEEERRKRYPS 320 (405)
T ss_dssp EEEEECCCSCSSTTCEEEEEESSCSSSCCSSCEEEEEESCCTTHHHHCCSCCEESSHHHHHHHHTTSSCCHHHHHHHSCC
T ss_pred HEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEECCCCCCCCEEEEECCCCHHHCCCCCEECCCCCCCC
T ss_conf 11234542135665443334556777898753368646676233213765770466403310100145321104665545
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~l~~e~~~~La~l~~~iE~~fg~PqDIEWAi~dg~L~ILQaRPv~~t~~a~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 400 (405)
T d1h6za3 321 MEEAMPENYRLLCDVRKRLENHYRDMQDLEFTVQDGRLWLLQCRNGKRTIHAAVRIAIDMVNEGLISREEAVLRIDPYQV 400 (405)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHTSCEEEEEEEETTEEEEEEEEECCCCHHHHHHHHHHHHHHTSSCHHHHHHTSCGGGG
T ss_pred HHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHH
T ss_conf 55528799999999999999982998204999989989999766788668889999999997699798999872798278
Q ss_pred ----C
Q ss_conf ----9
Q 000711 482 ----S 482 (1338)
Q Consensus 482 ----s 482 (1338)
-
T Consensus 401 ~~~~~ 405 (405)
T d1h6za3 401 DHLMH 405 (405)
T ss_dssp GGGGC
T ss_pred HHHCC
T ss_conf 67448
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=30549.67 Aligned_cols=1 Identities=0% Similarity=-1.357 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 m~d~~~vR~~FP~l~~~~~~~~~iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~ 80 (405)
T d1jf9a_ 1 IFSVDKVRADFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFIN 80 (405)
T ss_dssp CCCHHHHHHTCGGGGCEETTEECEECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHCHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 98979998758211467189982997382006899999999999998666987630409999999999999999999839
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~i~~~~~~T~~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~g~~~~~~~~~~i 160 (405)
T d1jf9a_ 81 ARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLF 160 (405)
T ss_dssp CSCGGGEEEESSHHHHHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHC
T ss_conf 98755430237688897788842331026789989998375331699999999973968999877998838799999753
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~t~lv~~~~v~~~tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g~~~id~~~~~~D~~~~s~hK~~Gp~G~g~l~v~~~ 240 (405)
T d1jf9a_ 161 DEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEA 240 (405)
T ss_dssp CTTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCSSCEEEEECHH
T ss_pred CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEECCCCEECCCCCCCHHHCCCCEEECCCCCCCCCCCCEEEEECHH
T ss_conf 69957999966777655438467766678873975641554000015653333078646613230156887510242265
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~~l~~~~ 320 (405)
T d1jf9a_ 241 LLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVP 320 (405)
T ss_dssp HHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 54036863223565675344555655553224307787677899999999999981849999999999988776651388
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~~~~~~~r~~ivsf~~~~~~~~~~~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt~eDid~l~~~l~~i 400 (405)
T d1jf9a_ 321 DLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRI 400 (405)
T ss_dssp TEEEESCTTCCSEEEEEETTCCHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEECCCHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 65556876767479997389899999999987892997660321567886099988999788999999999999999999
Q ss_pred ----C
Q ss_conf ----9
Q 000711 482 ----S 482 (1338)
Q Consensus 482 ----s 482 (1338)
-
T Consensus 401 ~r~~~ 405 (405)
T d1jf9a_ 401 HRLLG 405 (405)
T ss_dssp HHHHC
T ss_pred HHHCC
T ss_conf 99609
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=30548.02 Aligned_cols=1 Identities=0% Similarity=-2.387 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~g~~~~~~~~~~~~re~v~v~~~~dt~rDG~~d~l~~di~rP~~~~k~Pvil~~sPY~~~~~~~~~~~~~~~ 80 (405)
T d1lnsa3 1 LDNHYHFFNDKSLATFDSSLLEREVLWVESPVDSEQRGENDLIKIQIIRPKSTEKLPVVMTASPYHLGINDKANDLALHD 80 (405)
T ss_dssp CCSSCCEETTEECSCSCGGGCEEEEEEEECSCCTTCSSSCCEEEEEEEECCCSSCEEEEEEECSSTTCCCHHHHHHHCCC
T ss_pred CCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 98855433783413205887568688982888878899874799999742889974599996786787766544322345
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GYavv~~D~RG~g~S~G~~~~~~~~ 160 (405)
T d1lnsa3 81 MNVELEEKTSHEIHVEQKLPQKLSAKAKELPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGFQTSGDYQ 160 (405)
T ss_dssp CCCCCCCCCSEECCCCCCCCCCCCCCCCCCCEESSCSCBCCCCCCCHHHHHHHTTTCEEEEECCTTSTTSCSCCCTTSHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHH
T ss_conf 65433445543333233454222234555665555654455664445568898679879997888788999755468866
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 e~~D~~~~IeWl~~~~~~~~~~~~~~~~~q~WsnGkVGm~G~SY~G~~q~~aA~~~pp~LkAivp~~~~~d~y~~~~~~G 240 (405)
T d1lnsa3 161 QIYSMTAVIDWLNGRARAYTSRKKTHEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENG 240 (405)
T ss_dssp HHHHHHHHHHHHTTSSCEESSTTCCCEECCTTEEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSS
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHCCC
T ss_conf 63009999999871563333433443211454387458995289999999998608865419994476655888754178
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~w~~~s~~~~~~~I~vP~L~i~G 320 (405)
T d1lnsa3 241 LVRSPGGFPGEDLDVLAALTYSRNLDGADFLKGNAEYEKRLAEMTAALDRKSGDYNQFWHDRNYLINTDKVKADVLIVHG 320 (405)
T ss_dssp SBCCCTTCTTCCHHHHHHHHCGGGGSHHHHHHHHHHHHHHHHHHHHHHCTTTCCCCHHHHTTBGGGGGGGCCSEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHCHHHHHHCCCHHHHHHHHCCCCCHHHHHHCCHHHHHHCCCCCEEEEEE
T ss_conf 40035421255666653146655555400221115565154203455541233233555536853565137988899975
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 w~D~~v~~~~~~~~y~al~~~~~~~Lilgpw~H~~~~~~~~~d~~~~~~~wFD~~LkG~~ng~~~~~~~~~~~~g~~~W~ 400 (405)
T d1lnsa3 321 LQDWNVTPEQAYNFWKALPEGHAKHAFLHRGAHIYMNSWQSIDFSETINAYFVAKLLDRDLNLNLPPVILQENSKDQVWT 400 (405)
T ss_dssp TTCCSSCTHHHHHHHHHSCTTCCEEEEEESCSSCCCTTBSSCCHHHHHHHHHHHHHTTCCCCCCCCSEEEECTTSSSCEE
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCC
T ss_conf 06889897899999999873799379995887899765555369999999999986889889898987999737999741
Q ss_pred ----C
Q ss_conf ----9
Q 000711 482 ----S 482 (1338)
Q Consensus 482 ----s 482 (1338)
=
T Consensus 401 ~~~~W 405 (405)
T d1lnsa3 401 MMNDF 405 (405)
T ss_dssp EESCS
T ss_pred CCCCC
T ss_conf 08989
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=100.00 E-value=0 Score=30477.08 Aligned_cols=1 Identities=0% Similarity=0.005 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~d~~d~l~~~R~~F~~~~~~iYLd~as~g~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA 80 (404)
T d1qz9a_ 1 TTRNDCLALDAQDSLAPLRQQFALPEGVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLA 80 (404)
T ss_dssp CCHHHHHHHHHTCTTGGGGGGBCCCTTCEECCTTTSCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHH
T ss_pred CCHHHHHHHCCCCCHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 96699997567781899985189999989867851033789999999999998750467565552328999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~llga~~~ei~~~~~~T~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (404)
T d1qz9a_ 81 TLIGARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDSPEELPQA 160 (404)
T ss_dssp TTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESSGGGHHHH
T ss_pred HHHCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHEEEEECEECCCCCCCHHHHHH
T ss_conf 99689987579956706777777655555420357885799962543347788775422132100010354542668986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 i~~~T~lV~i~~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~~g~~~~ 240 (404)
T d1qz9a_ 161 IDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWV 240 (404)
T ss_dssp CSTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTCCCEEEE
T ss_pred CCCCCEEEEEECCCCCCCCEECHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEECHHHCCCCCCEEEEEEE
T ss_conf 69884599984245555616238997310324443326885123321233444454509998050214668856999874
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 320 (404)
T d1qz9a_ 241 SPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELV 320 (404)
T ss_dssp CTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 36556307863223577555522234544335604554320010467888777888877668999999987678999988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~~~~~~~~i~~p~~~~~r~~~vsf~~~~~~~v~~~L~~~gi~~~~r~~~~lRiS~~h~ynt~~did~~~~~L~~vl~~ 400 (404)
T d1qz9a_ 321 EQRCAAHELTLVTPREHAKRGSHVSFEHPEGYAVIQALIDRGVIGDYREPRIMRFGFTPLYTTFTEVWDAVQILGEILDR 400 (404)
T ss_dssp HHHHTTSCCEECSCSSGGGBCSEEEEECTTHHHHHHHHHTTTEECEEETTTEEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCEEEECCCCCCCEEEEEEEECCCHHHHHHHHHHCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 75435898799788883120139999169999999999888989862599869997997789999999999999999971
Q ss_pred ---C
Q ss_conf ---9
Q 000711 482 ---S 482 (1338)
Q Consensus 482 ---s 482 (1338)
+
T Consensus 401 ~~~~ 404 (404)
T d1qz9a_ 401 KTWA 404 (404)
T ss_dssp TTTC
T ss_pred CCCC
T ss_conf 7889
|
| >d2b5dx2 c.6.2.4 (X:1-404) Alpha-amylase AmyC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: 7-stranded beta/alpha barrel superfamily: Glycoside hydrolase/deacetylase family: AmyC N-terminal domain-like domain: Alpha-amylase AmyC species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=30476.44 Aligned_cols=1 Identities=0% Similarity=-0.793 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~k~~l~lvlH~HqP~~~~~~~~~~~ee~W~~~~~~~~Y~pll~~l~~~~~~r~t~n~sP~LleQL~D~~~~~~f~~~~~~ 80 (404)
T d2b5dx2 1 MRGKILIFLHAHLPYVHHPEYDHFLEERWLFEAITETYIPLLMMFDEIEDFRLTMSITPPLMEMLSSRDLQEKYERHMEK 80 (404)
T ss_dssp CCEEEEEEEEECCCCCCCTTCSSCTTHHHHHHHHHHTHHHHHHHHHHSSCCCEEEEECHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHCHHHHHHHHHHHHH
T ss_conf 93489999945888644899886443669999999988999999985868619998779999987586756446999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~r~L~~~G~vEll~~~y~Hpilpll~~~~e~~~ 160 (404)
T d2b5dx2 81 LIELANKEVERTKKEHPLKHKMAKFYREHFEKILNVFRSYDGNILEGFKKYQETGKLEIVTCNATHAFLPLYQMYPEVVN 160 (404)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHHHTSEEEEEECTTCBCGGGGTTCHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCCCHHHHH
T ss_conf 99986666552234204788999999999999999999966478999999997698048723520123455049869999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~Qi~~g~~~~~~~fG~~P~G~W~pE~a~~~~l~~~l~~~Gi~~~~~d~~~l~~~~~~~~~~~~~p~~~~~~~~~~~rd~~ 240 (404)
T d2b5dx2 161 AQITVGVKNYEKHMKKHPRGIWLAECGYYQGLDLYLAQNNVEYFFVDSHAFWFADEQPRYGVYRPIMTPSGVFAFARDPE 240 (404)
T ss_dssp HHHHHHHHHHHHHHSSCCSEEECGGGCBCTTHHHHHHHTTCCEEEECTHHHHTSSSCCTTGGGSCEECTTSCEEEECCGG
T ss_pred HHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHCCCCEEEECCHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCC
T ss_conf 99999999999986999988978753558769999997798699968335523577887666576215886157742510
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~vws~~~G~pg~~~~~~~~~~~~~~~~~~~i~~~frd~~ls~~igf~y~~~~~~~~~~~~k~~Yd~~~A~~~a~~~a 320 (404)
T d2b5dx2 241 SSEQVWSAAVGYPGDPRYREFYRDIGFDREMEYIKDYIDPSGVRINTGIKYHRITSKSLDASQKEYYDIDLAMEAVEEHA 320 (404)
T ss_dssp GCGGGGCTTTSGGGCTTSBCTTCCHHHHSCHHHHGGGSCTTSCCCCCSCCCBBCCSSCSCGGGCCBCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 01235414568878842121024533467776135764477632011402303566446643234479899999999989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~f~~~~~~~~~~~~~~~~~~~vv~i~~DgE~fGh~w~eG~~fL~~l~~~l~~~~~i~~~T~se~l~~~~~~~~~~l~~g 400 (404)
T d2b5dx2 321 RDFLHKKESQARRLMDIMGVEPVIVAPFDAELFGHWWFEGVFFLKRFFELVNESKDLKLVTASEVIDTLEEVQIATPADS 400 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCEEEEEEEGGGBTTTBTTHHHHHHHHHHHHHHCSSEEECCHHHHHHHCCCCCBCCCCSB
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHCCCCCHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHCCCCCCCCCCCC
T ss_conf 99999999999876523689987999755132066713379999999999863898389769999986899772230799
Q ss_pred ---C
Q ss_conf ---9
Q 000711 482 ---S 482 (1338)
Q Consensus 482 ---s 482 (1338)
|
T Consensus 401 SWg~ 404 (404)
T d2b5dx2 401 SWGA 404 (404)
T ss_dssp CSCC
T ss_pred CCCC
T ss_conf 9998
|
| >d1re9a_ a.104.1.1 (A:) Cytochrome P450-CAM {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cytochrome P450-CAM species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=0 Score=30476.39 Aligned_cols=1 Identities=0% Similarity=-1.789 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 l~p~p~~~p~~~~~d~d~~~p~~~~~dp~~~~~~lr~~~~~~~~~~~~~~g~w~vtr~~dv~~vl~d~~~Fss~~~~~~~ 80 (404)
T d1re9a_ 1 LAPLPPHVPEHLVFDFDMYNPSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRHFSSECPFIPR 80 (404)
T ss_dssp CCCCCTTSCGGGBCCCCTTSCTTGGGCHHHHHGGGGSTTSCSEEEECGGGCEEEECSHHHHHHHHHCTTTEETTSCSSSH
T ss_pred CCCCCCCCCHHHCCCCCCCCHHHHHCCCHHHHHHHHHHCCCCEEEECCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 98877999832266789898577632818999999960899779856999989976999999997699757689987764
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~D~p~H~~~R~~l~~~Fs~~~l~~~~~~i~~~~~~ll~~~~~~g~~D~v~~~a~~l~~~vi~~llG~p 160 (404)
T d1re9a_ 81 EAGEAYDFIPTSMDPPEQRQFRALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFMLLAGLP 160 (404)
T ss_dssp HHHHHCCCTTTTCCTTHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGGGSEEEHHHHTTTHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHC
T ss_conf 44333456654578889999997526757843189998999999999974421467346420344577888799987420
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~li~~~r~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~l~~ag~ 240 (404)
T d1re9a_ 161 EEDIPHLKYLTDQMTRPDGSMTFAEAKEALYDYLIPIIEQRRQKPGTDAISIVANGQVNGRPITSDEAKRMCGLLLVGGL 240 (404)
T ss_dssp GGGHHHHHHHHHHHHSCCSSSCHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHTCEETTEECCHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 02102321335655431226899999999999999998887506654402333100233345758899999999998763
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 eTt~~~l~~~~~~L~~~p~~~~~l~~~~~~~~~~v~E~lR~~~p~~~~r~~~~~~~~~G~~ip~G~~V~~~~~aanrDp~ 320 (404)
T d1re9a_ 241 DTVVNFLSFSMEFLAKSPEHRQELIERPERIPAACEELLRRFSLVADGRILTSDYEFHGVQLKKGDQILLPQMLSGLDER 320 (404)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHCGGGHHHHHHHHHHHTCCBCCEEEESSCEEETTEEECTTCEEECCHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 34678899999997550588999876410111123342234553333433223200388667640233243675367854
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~f~dPd~F~p~R~~~~hl~FG~G~h~C~G~~lA~~e~~~~l~~ll~r~p~~~l~~~~~~~~~~~~~~g~~~lpv~~~P~~ 400 (404)
T d1re9a_ 321 ENACPMHVDFSRQKVSHTTFGHGSHLCLGQHLARREIIVTLKEWLTRIPDFSIAPGAQIQHKSGIVSGVQALPLVWDPAT 400 (404)
T ss_dssp TSSSTTSCCTTCSSCCCCTTCCGGGCCTTHHHHHHHHHHHHHHHHHHCCCCEECTTCCCCEECSSBCEESCCEEECCGGG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCEECCCCCCCCCEEEEEEEEECC
T ss_conf 47993331889999998877998616801999999999999999997898589999964315887258543468992068
Q ss_pred ---C
Q ss_conf ---9
Q 000711 482 ---S 482 (1338)
Q Consensus 482 ---s 482 (1338)
.
T Consensus 401 ~~~~ 404 (404)
T d1re9a_ 401 TKAV 404 (404)
T ss_dssp CCCC
T ss_pred CCCC
T ss_conf 6869
|
| >d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=30476.44 Aligned_cols=1 Identities=0% Similarity=0.172 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~P~Pi~~~~Dp~dR~v~~~P~~~~pyD~R~~i~g~~~~~~~~~~i~D~~sF~E~~~~~a~svVtG~ARL~G~PVGVIAn 80 (404)
T d1uyra2 1 NMPVPILETKDTWDRPVDFTPTNDETYDVRWMIEGRETESGFEYGLFDKGSFFETLSGWAKGVVVGRARLGGIPLGVIGV 80 (404)
T ss_dssp TSCCCCCCCSSCSSSCCCCCCCSSSCCCHHHHHHCEEETTEEECCSSCTTCCEEESTTSCTTEEEEEEEETTEEEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCEEEEEEEECCEEEEEEEE
T ss_conf 98989789999800135657899999777999846755555445010287025520046786699999999999999986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 e~~~~~g~i~aDpa~~~s~~~~~~~~Ggv~~p~sA~K~A~~i~d~cd~~~lPLi~l~D~pGF~~G~~~E~~gilr~GA~i 160 (404)
T d1uyra2 81 ETRTVENLIPADPANPNSAETLIQEPGQVWHPNSAFKTAQAINDFNNGEQLPMMILANWRGFSGGQRDMFNEVLKYGSFI 160 (404)
T ss_dssp CCSCEEEEECCCTTCSSCCCEEEEECTTCBCHHHHHHHHHHHHHHHTTSCCCEEECCCCCCBCC------CTHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 76102687568755653055565404786685579999999998652346645886137766676899987899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 v~A~~~~~vP~i~vI~~~g~~~GGa~vv~~~~~~~~~~~~yAwP~a~~gVm~pEGav~I~fr~e~~~~~~~r~d~~~~el 240 (404)
T d1uyra2 161 VDALVDYKQPIIIYIPPTGELRGGSWVVVDPTINADQMEMYADVNARAGVLEPQGMVGIKFRREKLLDTMNRLDDKYREL 240 (404)
T ss_dssp HHHHHTCCSCEEEEECTTCEEEHHHHHTTCGGGGTTTEEEEEETTCEEESSCHHHHHHHHSCHHHHHHHHHHC-------
T ss_pred HHHHHHCCCCEEEEEECCCCCCHHHHHCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHEECCHHHHCCHHHHHHHHHHH
T ss_conf 99998548997999957864130234103676677655488878654106786654321033021113265568999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~l~~~~~a~e~~~~l~~~i~~re~~l~p~y~qvA~~Fadlhdt~~Rm~~kG~I~~iv~w~~tR~~~~~~lrr~l~e~~ 320 (404)
T d1uyra2 241 RSQLSNKSLAPEVHQQISKQLADRERELLPIYGQISLQFADLHDRSSRMVAKGVISKELEWTEARRFFFWRLRRRLNEEY 320 (404)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTTSSHHHHHHHTCSSEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 98725755587789999999999999862789999999998508687898568466122878859999999999874999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (404)
T d1uyra2 321 LIKRLSHQVGEASRLEKIARIRSWYPASVDHEDDRQVATWIEENYKTLDDKLKGLKLESFAQDLAKKIRSDHDNAIDGLS 400 (404)
T ss_dssp HHHTTTTCCSSCCHHHHHHHHHTTSCTTSCTTCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 99999985777787999999999987346865639999999847799999999998999999999997539088999999
Q ss_pred ---C
Q ss_conf ---9
Q 000711 482 ---S 482 (1338)
Q Consensus 482 ---s 482 (1338)
-
T Consensus 401 ~~~~ 404 (404)
T d1uyra2 401 EVIK 404 (404)
T ss_dssp TCCC
T ss_pred HHHC
T ss_conf 9849
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=100.00 E-value=0 Score=30475.79 Aligned_cols=1 Identities=0% Similarity=-0.194 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~y~p~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~ 80 (404)
T d1z7da1 1 KTPEDYINNELKYGAHNYDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFS 80 (404)
T ss_dssp CCHHHHHHHHHHHBCCCCCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTTSEE
T ss_pred CCHHHHHHHHHHCCCCCCCCCCCEEEEEECCEEEECCCCEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 98799997787617888999885699946388997998999983306887846259699999999999857886665102
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~ 160 (404)
T d1z7da1 81 VPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNF 160 (404)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC---------------------
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 79999997444314433024410243037789999998875213443222442222245788744333456554455677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~ 240 (404)
T d1z7da1 161 GPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLC 240 (404)
T ss_dssp -----CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSG
T ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC
T ss_conf 88876300236656899999706997799999778388897409999999999999881978999767547774434345
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~e~~gv~PDivt~gK~l~gG~~p~~~v~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~~~~~~~~~~~~~~ 320 (404)
T d1z7da1 241 VHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFL 320 (404)
T ss_dssp GGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCHHHHH
T ss_conf 00059887778872311289887554456399871478998576889895013555544344300003443001015789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~l~~~Gl~~~~~~~~~ir~~Ppl~it~~~id~~~~~l~~al 400 (404)
T d1z7da1 321 ENLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTV 400 (404)
T ss_dssp HHHHHHHTTCTTEEEEEEETTEEEEEECTTTCCHHHHHHHHHHTTEECCEETTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEEEECCEEEEEECCCCCCHHHHHHHHHHCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999975699727887527199999748865599999999969938943899989997986789999999999999999
Q ss_pred ---C
Q ss_conf ---9
Q 000711 482 ---S 482 (1338)
Q Consensus 482 ---s 482 (1338)
-
T Consensus 401 k~~~ 404 (404)
T d1z7da1 401 KFFD 404 (404)
T ss_dssp HHHC
T ss_pred HHHC
T ss_conf 9629
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=30473.24 Aligned_cols=1 Identities=100% Similarity=1.268 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~p~P~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~~~~~~~~~ 80 (404)
T d2byla1 1 GPPTSDDIFEREYKYGAHNAHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSRAF 80 (404)
T ss_dssp CCCCHHHHHHHHHHHBCSCCCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTTE
T ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCEEEECCCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 98967999999877546788987844898454999979879999926889988553798999999999996478755643
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~ 160 (404)
T d2byla1 81 YNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYD 160 (404)
T ss_dssp EESSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHT
T ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCC
T ss_conf 31049999876543011332220147666403589999987640366312311223357884556510340577865455
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~p~~~~~~~~p~~d~~~l~~~l~~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~ 240 (404)
T d2byla1 161 GFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRW 240 (404)
T ss_dssp TSCSCCTTEEEECTTCHHHHHHHHTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred CCCCCCCCEEEECCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCC
T ss_conf 77888887157346679999985579986999978843888971499999999999998628079960465364635533
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~a~~~~gv~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~g~~ 320 (404)
T d2byla1 241 LAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEEENLAENADKLGII 320 (404)
T ss_dssp SGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred CHHHHCCCCCCEEEECCHHHCCCCCCEEEEECHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 33654699988999774646898662104521023312578887859886999999999999999854703566676688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 l~~~l~~l~~~~i~~vRg~Gl~~~i~~~~~~~~~~~~~~~~l~~~Gvl~~~~~~~~i~l~PpL~it~~~id~~~~~l~~a 400 (404)
T d2byla1 321 LRNELMKLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKT 400 (404)
T ss_dssp HHHHHHTSCTTTEEEEEEETTEEEEEECCCSSCCHHHHHHHHHHTTEECEEEETTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCEEEEECCCEEEEEEECCCCHHHHHHHHHHHHCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 99999960136631356246289999826886129999999996991992489998999799678999999999999999
Q ss_pred ---C
Q ss_conf ---9
Q 000711 482 ---S 482 (1338)
Q Consensus 482 ---s 482 (1338)
=
T Consensus 401 l~~f 404 (404)
T d2byla1 401 ILSF 404 (404)
T ss_dssp HHTC
T ss_pred HHCC
T ss_conf 9729
|
| >d1h12a_ a.102.1.2 (A:) Endo-1,4-beta-xylanase {Pseudoalteromonas haloplanktis [TaxId: 228]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Cellulases catalytic domain domain: Endo-1,4-beta-xylanase species: Pseudoalteromonas haloplanktis [TaxId: 228]
Probab=100.00 E-value=0 Score=30470.89 Aligned_cols=1 Identities=0% Similarity=-0.759 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
|
T Consensus 1 ~~~~~~~~~~a~~~~~y~n~~~~~~~~~i~~k~~~~~~~~f~~~~~~~~y~~~~~~~~~~~~~~~~i~d~~~~dv~SEGq 80 (404)
T d1h12a_ 1 AFNNNPSSVGAYSSGTYRNLAQEMGKTNIQQKVNSTFDNMFGYNNTQQLYYPYTENGVYKAHYIKAINPDEGDDIRTEGQ 80 (404)
T ss_dssp CCCSSCCSSCHHHHCCCCCHHHHTTCCSHHHHHHHHHHHHSSSCSSSCCEEEEEETTEEEEEEEEECCTTTCCEEEHHHH
T ss_pred CCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 98888787761333755478898619999999999999971789884489971687665200012255479986654378
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 gYGMl~Av~~ndr~~FD~Lw~Wt~~~l~~~d~~~~~~~~gL~aW~~~~~~~~~~~v~d~nsAtDGDl~iA~ALl~A~~~W 160 (404)
T d1h12a_ 81 SWGMTAAVMLNKQEEFDNLWRFAKAYQKNPDNHPDAKKQGVYAWKLKLNQNGFVYKVDEGPAPDGEEYFAFALLNASARW 160 (404)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTBCCTTCSSGGGTTCBEEEEEECTTSCEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 89999999809999999999999998604555444455677613345888987556889999768999999999999861
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 g~~~~~~Y~~eA~~il~~i~~~~~~~~~~~l~P~~~~f~nPSY~~P~~~~~fa~~~~~~~~~~~W~~v~~~s~~ll~~~~ 240 (404)
T d1h12a_ 161 GNSGEFNYYNDAITMLNTIKNKLMENQIIRFSPYIDNLTDPSYHIPAFYDYFANNVTNQADKNYWRQVATKSRTLLKNHF 240 (404)
T ss_dssp CSSSSCCHHHHHHHHHHHHHHHSEETTEECSCTTCSSCBCGGGCCHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 89407799999999999888740578852556875578686325489999999860577540889999999999999850
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~s~~p~~gL~~d~~~~dg~~~~~~~~~~~~~~~~~~~yDA~Rvpl~~a~dy~w~~~d~~~~~~~~~~~~f~~~~~~~~ 320 (404)
T d1h12a_ 241 TKVSGSPHWNLPTFLSRLDGSPVIGYIFNGQANPGQWYEFDAWRVIMNVGLDAHLMGAQAWHKSAVNKALGFLSYAKTNN 320 (404)
T ss_dssp HHHSSTTTTTCCCSCBCTTSCBCCSCCSTTCCSCTTEECTTTHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 13467887789957872489736676667676778865502888778998887505888455799999999999875026
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~~~~~~~~~~G~~~~~~~~~g~~a~~a~a~~a~~~~~~a~~~~~~~~~~~~~~~~~~YY~~~L~L~~ll~lsG~~r~~ 400 (404)
T d1h12a_ 321 SKNCYEQVYSYGGAQNRGCAGEGQKAANAVALLASTNAGQANEFFNEFWSLSQPTGDYRYYNGSLYMLAMLHVSGNFKFY 400 (404)
T ss_dssp TTSSCBSCEETTEECSSCBCCHHHHHHHHHHGGGCCCHHHHHHHHHHHHTCCCCCSTTHHHHHHHHHHHHHHTTTCCCCC
T ss_pred CCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 88877631316896478888889999999999864793789999999970357888888789999999999963984772
Q ss_pred ---C
Q ss_conf ---9
Q 000711 482 ---S 482 (1338)
Q Consensus 482 ---s 482 (1338)
-
T Consensus 401 ~~~~ 404 (404)
T d1h12a_ 401 NNTF 404 (404)
T ss_dssp CCC-
T ss_pred CCCC
T ss_conf 4579
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=100.00 E-value=0 Score=30398.13 Aligned_cols=1 Identities=0% Similarity=-1.822 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~~~~~~~~s~ire~~~~~~~~~~i~l~~G~P~~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~ai 80 (403)
T d1wsta1 1 INFDSFFSEKAMLMKASEVRELLKLVETSDVISLAGGLPAPETFPVETIKKIAVEVLEEHADKALQYGTTKGFTPLRLAL 80 (403)
T ss_dssp CCGGGGCCHHHHHCCCHHHHHHHHHHTSSSCEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCSSCCHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 98789999998508981899999972899958899978895206989999999999974760014889986779999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 a~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~ 160 (403)
T d1wsta1 81 ARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAIQAFKYYDPEFISIPLDDKGMRVDLLEEK 160 (403)
T ss_dssp HHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTEECHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC
T ss_conf 99999984899876773642221178899999986268755567886303567776404540267523667743112122
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S 240 (403)
T d1wsta1 161 LEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGT 240 (403)
T ss_dssp HHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEE
T ss_pred CHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCHHHEECCCCCCCCCCCCCCCCCEEEECC
T ss_conf 00011101343212322466898786399999999998887449265345021212347887874345677770799845
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~SK~~~~G~RiG~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 320 (403)
T d1wsta1 241 FSKILAPGFRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPE 320 (403)
T ss_dssp STTTTCGGGCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred CCCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 55133685663444456578899999876402345530145677654114430467889999888999999999864668
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~~~~p~gg~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRi~~~~~~~~~l~~al~rl~~~l~~~~ 400 (403)
T d1wsta1 321 GVEWTKPEGGMFVRVTLPEGIDTKLMMERAVAKGVAYVPGEAFFVHRDKKNTMRLNFTYVPEETIREGVRRLAETIKEEM 400 (403)
T ss_dssp TCEECCCSBSSEEEEECCTTCCTTTTHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCEEEEEEECCCCCCHHHHHHHHHHCCEEEEECHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 73780788146999989999999999999997897999336636899989979999567999999999999999999998
Q ss_pred --C
Q ss_conf --9
Q 000711 482 --S 482 (1338)
Q Consensus 482 --s 482 (1338)
-
T Consensus 401 k~~ 403 (403)
T d1wsta1 401 KRV 403 (403)
T ss_dssp HHC
T ss_pred HCC
T ss_conf 449
|
| >d1xksa_ b.69.14.1 (A:) Nuclear pore complex protein Nup133 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nuclear pore complex protein Nup133 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=30396.04 Aligned_cols=1 Identities=0% Similarity=-0.194 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~ve~~g~~LPv~V~EaLt~a~~~~~~s~~~s~~G~awvv~g~~l~VW~y~~s~~~~~~~C~~L~LP~sdl~~~a~ 80 (403)
T d1xksa_ 1 ESVNYDVKTFGSSLPVKVMEALTLAEVDDQLTINIDEGGWACLVCKEKLIIWKIALSPITKLSVCKELQLPPSDFHWSAD 80 (403)
T ss_dssp CCSSEEEEECSSCCCHHHHHHHHHCCTTSCEEEEECTTSEEEEEETTEEEEEECCSSCCGGGCCEEEEECCCCSSCCCGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCCEEEEEECCEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCC
T ss_conf 97542676778987688998862057887447999899679999799999971578887787521797189645455676
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 Lv~v~~~~~~~~~~~~~~~gvi~vs~tG~VryW~sI~~~~s~~e~~i~l~~~E~~~~l~~~e~~g~ilatstg~l~l~~~ 160 (403)
T d1xksa_ 81 LVALSYSSPSGEAHSTQAVAVMVATREGSIRYWPSLAGEDTYTEAFVDSGGDKTYSFLTAVQGGSFILSSSGSQLIRLIP 160 (403)
T ss_dssp GEEEEECC-------CTTEEEEEECTTCEEEEESCTTCTTCCEEEECC----CCEEEEEEETTTEEEEEETTCCEEEEEE
T ss_pred EEEECCCCCCCCCCCCCCCEEEEECCCCEEEECHHCCCCCCCCEEEECCCCCEEEEEEEECCCCCEEEEECCEEEEEEEC
T ss_conf 56761367767667887657999979921898710255766423431368966899888507842999947514999923
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~l~~~~L~~~~g~l~Gi~~~~sSl~~~~~~~~~~~~~s~~~~~~~~~v~~ls~~~lq~W~l~~~~e~~~~~~di~~ 240 (403)
T d1xksa_ 161 ESSGKIHQHILPQGQGMLSGIGRKVSSLFGILSPSSDLTLSSVLWDRERSSFYSLTSSNISKWELDDSSEKHAYSWDINR 240 (403)
T ss_dssp CTTSCEEEEECTTCCCC------------------CCCCEEEEEEETTTTEEEEEESSEEEEEEECSSCEEEEEEEEHHH
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCHHEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEHHHHH
T ss_conf 78982899993588754555334542002124775434211133455314999977995478980389861567513789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~i~e~~~~~i~~~~~~~~~~~~~i~~~~LD~~~~~~g~~iL~~~~~~~~~~~~~yy~L~ti~~~~~~~~~~~~~~l~~~~ 320 (403)
T d1xksa_ 241 ALKENITDAIWGSESNYEAIKEGVNIRYLDLKQNCDGLVILAAAWHSADNPCLIYYSLITIEDNGCQMSDAVTVEVTQYN 320 (403)
T ss_dssp HHHHHHHHHHHTTSTTHHHHHTTCEEEEEEEEEETTEEEEEEEEECTTSSSCBEEEEEEEECCBTTBCCSCEEEEECSCC
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCEEEEEEEEEECCCCCEEEEEEEEEEEEC
T ss_conf 99999998752023556565444305998875848976999999732668870799999998278713788999867767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~~~~~~~~~rl~vp~p~~~~ayv~~~~~V~~~~~~~~~~~~~~d~I~F~~~~d~il~~~~~~~~pl~fs~~~Glv~it 400 (403)
T d1xksa_ 321 PPFQSEDLILCQLTVPNFSNQTAYLYNESAVYVCSTGTGKFSLPQEKIVFNAQGDSVLGAGACGGVPIIFSRNSGLVSIT 400 (403)
T ss_dssp CBCCCGGGCCCEEECCCSSSSEEEEECSSEEEEEECTTCTTCCCCEEEECCGGGCCEEEEEEETTEEEEEETTTEEEEEE
T ss_pred CCCCCCCCCCCEEEECCCCCCEEEEEECCEEEEEECCCCCCCCCCCEEEEECCCCEEEEEEEECCEEEEEEECCEEEEEE
T ss_conf 85674434760599658998389999099899995789989984417888454677885121578769999234189995
Q ss_pred --C
Q ss_conf --9
Q 000711 482 --S 482 (1338)
Q Consensus 482 --s 482 (1338)
-
T Consensus 401 ~~~ 403 (403)
T d1xksa_ 401 SRE 403 (403)
T ss_dssp ECC
T ss_pred CCC
T ss_conf 799
|
| >d1ueda_ a.104.1.1 (A:) p450 monoxygenase OxyC {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: p450 monoxygenase OxyC species: Amycolatopsis orientalis [TaxId: 31958]
Probab=100.00 E-value=0 Score=30395.95 Aligned_cols=1 Identities=0% Similarity=-1.059 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~p~~~~~~~~~dP~~~~~~lR~~gPv~ri~~~~~~~~g~~~~w~vt~~~~vr~vl~d~~~fss~~~~~~~ 80 (403)
T d1ueda_ 1 DIDQVAPLLREPANFQLRTNCDPHEDNFGLRAHGPLVRIVGESSTQLGRDFVWQAHGYEVVRRILGDHEHFTTRPQFTQS 80 (403)
T ss_dssp CCCSCCCEEECCTTTTCEETTEECHHHHHHHTTCSEEEEESHHHHHTTSSCEEEECSHHHHHHHHHCCSSEECCCCC---
T ss_pred CHHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHCCCEEEECCCCCCCCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 93234767688344023117997699999995399798516776435888489979999999997598646488665644
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~l~~~Dg~~h~~~Rr~l~~~Fs~~~l~~~~~~i~~~~~~ll~~l~~~g~~~Dl~~~~~~~~~~~~~~~ 160 (403)
T d1ueda_ 81 KSGAHVEAQFVGQISTYDPPEHTRLRKMLTPEFTVRRIRRMEPAIQSLIDDRLDLLEAEGPSADLQGLFADPVGAHALCE 160 (403)
T ss_dssp ------CGGGTTCGGGCCTTHHHHHHHHHGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEHHHHTHHHHHHHHHHH
T ss_pred CCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 55442202216764157815799999998686597999876179999999999874124875203566654456666677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rr~~~~~~~~~~~~~~~~~~ls~~~l~~~~~~~l 240 (403)
T d1ueda_ 161 LLGIPRDDQREFVRRIRRNADLSRGLKARAADSAAFNRYLDNLLARQRADPDDGLLGMIVRDHGDNVTDEELKGLCTALI 240 (403)
T ss_dssp HHTCCHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHGGGSCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 73260333456655554302301567888877777899999999999862133115555422366466888877788887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~aG~dTt~~~l~~~l~~L~~~p~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~R~~~~d~~~~G~~ip~G~~V~~~~~~ 320 (403)
T d1ueda_ 241 LGGVETVAGMIGFGVLALLDNPGQIELLFESPEKAERVVNELVRYLSPVQAPNPRLAIKDVVIDGQLIKAGDYVLCSILM 320 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSGGGTTHHHHCHHHHHHHHHHHHHHHCSSCSCSCEEESSCEEETTEEECTTCEEEECHHH
T ss_pred HCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEECCHHC
T ss_conf 40104678999999999862320101122202442212333202223344322010134645589743333210001000
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~rdp~~f~dP~~F~PeR~~~~~lpFG~G~r~CiG~~lA~~el~~~l~~Ll~~f~~~~l~~~~~~~~~~~~~~~~~~~lp 400 (403)
T d1ueda_ 321 ANRDEALTPDPDVLDANRAAVSDVGFGHGIHYCVGAALARSMLRMAYQTLWRRFPGLRLAVPIEEVKYRSAFVDCPDQVP 400 (403)
T ss_dssp HTTCTTTSSSTTSCCTTSCCCCCCTTCCSTTSCTTHHHHHHHHHHHHHHHHHHCTTCEESSCGGGCCBCCSSSCCBSCCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEECCCCEECCEEEE
T ss_conf 25783227994243889999999979998846918999999999999999996797788988776544477510764656
Q ss_pred --C
Q ss_conf --9
Q 000711 482 --S 482 (1338)
Q Consensus 482 --s 482 (1338)
=
T Consensus 401 v~f 403 (403)
T d1ueda_ 401 VTW 403 (403)
T ss_dssp EEC
T ss_pred EEC
T ss_conf 569
|
| >d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=0 Score=30394.51 Aligned_cols=1 Identities=0% Similarity=-0.127 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~p~~~~g~~~i~~~f~w~~~~i~~e~~~yL~~lG~taIwl~P~~e~~~~~~~~~~~y~gY~~~dY~v~~~~Gt~~dfk 80 (403)
T d1hx0a2 1 EYAPQTQSGRTSIVHLFEWRWVDIALECERYLGPKGFGGVQVSPPNENIVVTNPSRPWWERYQPVSYKLCTRSGNENEFR 80 (403)
T ss_dssp CCSCCCCTTCCEEEEETTCCHHHHHHHHHHTTTTTTCCEEEECCCSCBBCCTTTTSCGGGGGSBSCSCSCBTTBCHHHHH
T ss_pred CCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHH
T ss_conf 98998889972589700076899999999999981998799496815766788999876003687771489999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~Lv~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (403)
T d1hx0a2 81 DMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGNREFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDC 160 (403)
T ss_dssp HHHHHHHHTTCEEEEEECCSEEEETTCCCBSCBSSCCCBBGGGTBBTTTTBCGGGBCTTTCCSTTSBCCCTTCHHHHHHS
T ss_pred HHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
T ss_conf 99999986699799997124466655321345666764543334577788887667887656788874655771002331
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~l~~~pDLn~~np~Vr~~~~~~l~~~~~~GvdGfR~Da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~ 240 (403)
T d1hx0a2 161 QLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRIDASKHMWPGDIKAVLDKLHNLNTNWFPAGSRPFIFQEVIDLGGE 240 (403)
T ss_dssp BGGGEEEBCTTSHHHHHHHHHHHHHHHHHTCCEEEETTGGGSCHHHHHHHHTTCCCCCTTTSCTTCCCEEEECCCCCSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCC
T ss_conf 23445864679999999999999999873977653232321678899999999875073200156775278877516830
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Fl~NHD~~R~~~~~~~~~~~~~~~~~ 320 (403)
T d1hx0a2 241 AIKSSEYFGNGRVTEFKYGAKLGTVVRKWSGEKMSYLKNWGEGWGFMPSDRALVFVDNHDNQRGHGAGGSSILTFWDARL 320 (403)
T ss_dssp SSCGGGGTTTSEEECHHHHHHHHHHHTTCTTCCGGGGGGTTGGGTCCCGGGEEECSCCTTGGGTCSSCGGGCCCGGGHHH
T ss_pred HHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 21022025887102243223245787641620478998750111368845057863467775556678864144456789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~a~af~lt~p~G~P~iy~gy~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~r~~~i~~m~~frn~ 400 (403)
T d1hx0a2 321 YKIAVGFMLAHPYGFTRVMSSYRWARNFVNGEDVNDWIGPPNNNGVIKEVTINADTTCGNDWVCEHRWREIRNMVWFRNV 400 (403)
T ss_dssp HHHHHHHHHHSCSSEEEEEECBCCCCCEETTEETTTTCCSSEETTEECCCCBCTTSCBCTTBCCGGGSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999987898164676306644544577667778999888874688747767778518777668999999998663
Q ss_pred --C
Q ss_conf --9
Q 000711 482 --S 482 (1338)
Q Consensus 482 --s 482 (1338)
-
T Consensus 401 ~~g 403 (403)
T d1hx0a2 401 VDG 403 (403)
T ss_dssp TTT
T ss_pred CCC
T ss_conf 679
|
| >d1gwia_ a.104.1.1 (A:) Cyp154c1 monooxygenase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cyp154c1 monooxygenase species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=0 Score=30395.17 Aligned_cols=1 Identities=0% Similarity=0.105 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~lR~~GPv~~~~~~g~~~~~vvt~~~~v~~vl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (403)
T d1gwia_ 1 ARIPLDPFVTDLDGESARLRAAGPLAAVELPGGVPVWAVTHHAEAKALLTDPRLVKDINVWGAWRRGEIPADWPLIGLAN 80 (403)
T ss_dssp CCEECCTTCSCHHHHHHHHHHTCSEEEEEETTTEEEEEECSHHHHHHHHTCTTEECCGGGCHHHHTTCSCTTCTTHHHHS
T ss_pred CCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98888987669559999998149978988479960999679999999966976133765333222466765443200003
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~g~~ll~~dG~~h~~~R~~~~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~~~~d~~~~~a~~~~~~~~~~~~g~~~~~~ 160 (403)
T d1gwia_ 81 PGRSMLTVDGAEHRRLRTLVAQALTVRRVEHMRGRITELTDRLLDELPADGGVVDLKAAFAYPLPMYVVADLMGIEEARL 160 (403)
T ss_dssp CCSSGGGCCHHHHHHHHHHHTTTSCHHHHHTTHHHHHHHHHHHHHTSCCSCCCEEHHHHTTTHHHHHHHHHHHTCCGGGH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 68862158857899999997640443313222447989899875321035844431034433333233221047641000
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ag~~tt 240 (403)
T d1gwia_ 161 PRLKVLFEKFFSTQTPPEEVVATLTELASIMTDTVAAKRAAPGDDLTSALIQASENGDHLTDAEIVSTLQLMVAAGHETT 240 (403)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHCCBTTBCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCH
T ss_conf 00022233222222048999999999987689999987427642222111112123320123358999999987064210
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~l~~~~~~l~~~p~~~~~l~~~~~~l~~~i~E~lRl~pp~~~~~~r~~~~d~~~~g~~ip~G~~V~~~~~~~~rd~~~ 320 (403)
T d1gwia_ 241 ISLIVNAVVNLSTHPEQRALVLSGEAEWSAVVEETLRFSTPTSHVLIRFAAEDVPVGDRVIPAGDALIVSYGALGRDERA 320 (403)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHTTSSCHHHHHHHHHHHSCSBCCEEEEEESSCEEETTEEECTTCEEEECHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHCCCCCCCCCCCCCCCEEECCEEECCCCEEEEECCCCCCCHHH
T ss_conf 11445555433421589999997620100001220221275200024344687670435654632353100245677654
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~pdP~~F~PeR~~~~~~lpFG~G~r~C~G~~lA~~e~~~~l~~ll~~f~~~~l~~p~~~~~~~~~~~~~~~~~lpv~~~ 400 (403)
T d1gwia_ 321 HGPTADRFDLTRTSGNRHISFGHGPHVCPGAALSRMEAGVALPALYARFPHLDLAVPAAELRNKPVVTQNDLFELPVRLA 400 (403)
T ss_dssp HCGGGGSCCTTCCCSSCCCTTCCSTTCCTTHHHHHHHHHHHHHHHHHHCTTCEESSCGGGCCBCSCTTBCCBSCCEEESS
T ss_pred CCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEECCCCCCCCCCCEEEEEE
T ss_conf 09955434878899998376688872680199999999999999999679788888834464688655579876479995
Q ss_pred --C
Q ss_conf --9
Q 000711 482 --S 482 (1338)
Q Consensus 482 --s 482 (1338)
-
T Consensus 401 ~~~ 403 (403)
T d1gwia_ 401 HHH 403 (403)
T ss_dssp CC-
T ss_pred CCC
T ss_conf 079
|
| >d3b55a1 c.150.1.3 (A:40-442) Succinoglycan biosynthesis protein BC3120 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: EreA/ChaN-like superfamily: EreA/ChaN-like family: EreA-like domain: Succinoglycan biosynthesis protein BC3120 species: Bacillus cereus [TaxId: 1396]
Probab=100.00 E-value=0 Score=30399.00 Aligned_cols=1 Identities=0% Similarity=0.072 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~wi~~~a~pL~~~~p~~~~~Dl~~L~~~v~dariV~LGEatHGt~Ef~~~r~~l~r~Lvee~Gf~~va~E~d~~~~ 80 (403)
T d3b55a1 1 NQIAKWLEAHAKPLKTTNPTASLNDLKPLKNMVGSASIVGLGEATHGAHEVFTMKHRIVKYLVSEKGFTNLVLEEGWDRA 80 (403)
T ss_dssp HHHHHHHHHHCEEECCCCTTSCSGGGTTHHHHHTTCSEEEEEESCTTBHHHHHHHHHHHHHHHHHSCCCEEEEEEEHHHH
T ss_pred CHHHHHHHHHCEECCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHH
T ss_conf 95899999846718888999984779999987479739997267656079999999999999997699889994795889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~vn~yV~~g~g~~~~~~~~~w~~~e~~~li~WmR~yN~~~~~~~~v~f~G~D~~~~~~s~~~~v~~yl~~~~p~~~~~~ 160 (403)
T d3b55a1 81 LELDRYVLTGKGNPSQHLTPVFKTKEMLDLLDWIRQYNANPKHKSKVRVIGMDIQSVNENVYNNIIEYIKANNSKLLPRV 160 (403)
T ss_dssp HHHHHHHHHSCSCGGGTSCGGGCBHHHHHHHHHHHHHHHCTTCSCCCEEEEEECSCCCHHHHHHHHHHHHHHHGGGTHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCHHHHHHH
T ss_conf 99988875488887787676435288999999999984458877842799854565205578999999986198889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~ 240 (403)
T d3b55a1 161 EEKIKGLIPVTKDMNTFESLTKEEKEKYVLDAKTISALLEENKSYLNGKSKEFAWIKQNARIIEQFTTMLATPPDKPADF 240 (403)
T ss_dssp HHHHHHHGGGSSSHHHHHTSCHHHHHHHHHHHHHHHHHHHHTGGGGTTTSHHHHHHHHHHHHHHHHHHHTTCCTTCTTHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99874123333465667764155578899999999999998476541274679999999999999999998456774667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~RD~~Maenl~wl~~~~~kiivwaHN~Hi~~~~~~~~~~~~~~G~~L~e~~G~~y~~IG~~~~~G~v~a~~~~~~~~~ 320 (403)
T d3b55a1 241 YLKHDIAMYENAKWTEEHLGKTIVWGHNGHVSKTNMLSFIYPKVAGQHLAEYYGKRYVSIGTSVYEGQYNVKNSDGEFGP 320 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSEEEEEEHHHHSSSCSCTTTCSSCHHHHHHHHHGGGEEEEEEEEEEEEEEEECTTSCEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCEEECCCCCCCCCC
T ss_conf 77899999999999870689889995705425677554557554889999884874499999734640512567788663
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~v~~~~~~S~E~~l~~~~~~~~~ldlr~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~fDali~i~~~tP~ 400 (403)
T d3b55a1 321 YGTLKSDDPNSYNYIFGQVKKDQFFIDLRKANGVTKTWLNEQHPIFAGITTEGPDIPKTVDISLGKAFDILVQIQKVSPS 400 (403)
T ss_dssp EEECCCCCTTSHHHHHHTSSCSEEEEEGGGCCHHHHHHHTSCEEEECCCSBCBTTBCSEEEECHHHHCSEEEEEEEECBC
T ss_pred EEECCCCCCCCHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHCCEEEEECCCCCC
T ss_conf 02227999988999997369986898764365331557630424045357898666754058859969589996565745
Q ss_pred --C
Q ss_conf --9
Q 000711 482 --S 482 (1338)
Q Consensus 482 --s 482 (1338)
-
T Consensus 401 ~~~ 403 (403)
T d3b55a1 401 QVH 403 (403)
T ss_dssp CBC
T ss_pred CCC
T ss_conf 369
|
| >d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: Adenylosuccinate lyase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=100.00 E-value=0 Score=30328.59 Aligned_cols=1 Identities=0% Similarity=-0.427 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~sP~d~ry~~~~~~~ifs~~~~~~~~l~ve~a~a~a~~e~G~ip~~~a~~i~~~~~d~~~i~~~e~~~~hdv~a~~~~l 80 (402)
T d1dofa_ 1 HVSPFDWRYGSEEIRRLFTNEAIINAYLEVERALVCALEELGVAERGCCEKVNKASVSADEVYRLERETGHDILSLVLLL 80 (402)
T ss_dssp CCCGGGTTSSCHHHHTTSSHHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHCCCCTTTC--------CHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 92987656498899987294999999999999999999874989889999998723388999999988589804799998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~vH~G~TsnDi~~ta~~l~~r~~~~~l~~~l~~l~~~L~~~a~~~~~t~m~grTH~Q~A~P~T~G~~~~~~~~ 160 (402)
T d1dofa_ 81 EQKSGCRYVHYGATSNDIIDTAWALLIRRALAAVKEKARAVGDQLASMARKYKTLEMVGRTHGQWAEPITLGFKFANYYY 160 (402)
T ss_dssp HHHHCCSCTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 65347888502676487661598999986466788899999999999987640211003765256554229988888999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~l~r~~~rl~~~~~~~~~~~gGa~g~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~rd~~~e~~~~L~~~a~~L~kia 240 (402)
T d1dofa_ 161 ELYIACRQLALAEEFIRAKIGGAVGTMASWGELGLEVRRRVAERLGLPHHVITTQVAPRESFAVLASALALMAAVFERLA 240 (402)
T ss_dssp HHHHHHHHHHHHHHHCCBCCCCTTSSCGGGGGGHHHHHHHHHHHTTCCBCSSCSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999875034566552224430445789999887345555235555541001688999888898999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~Di~~~s~~e~ge~~e~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~erd~~~~~~~~~~l~~~~~~~~ 320 (402)
T d1dofa_ 241 VEIRELSRPEIGEVVEGGGGSSAMPHKANPTASERIVSLARYVRALTHVAFENVALWHERDLTNSANERVWIPEALLALD 320 (402)
T ss_dssp HHHHHHTSTTTCSEESCC---------CCCHHHHHHHHHHHHHHHHHHHHHHTTCCCTTCCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999717753541134675410258878428998724378887888999875124432120245655302532599999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~l~~~~~~l~~l~vn~erm~~~l~~s~~~i~ae~~~~~L~~~gl~~~~Ah~~v~~~~~~a~e~~k~~~e~l~~d~~~l~ 400 (402)
T d1dofa_ 321 EILTSALRVLKNVYIDEERITENLQKALPYILTEFHMNRMIKEGASRAEAYKKAKEVKALTFEYQKWPVERLIEDALSLK 400 (402)
T ss_dssp HHHHHHHHHHHHCEECHHHHHHHHHHHHHHHCHHHHHHHHHHTTCCHHHHHHHHTTCCCCCCGGGGCCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHCCCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHCC
T ss_conf 99999999876499989999999985158667999999999869999999999999999999958985999860825147
Q ss_pred -C
Q ss_conf -9
Q 000711 482 -S 482 (1338)
Q Consensus 482 -s 482 (1338)
|
T Consensus 401 l~ 402 (402)
T d1dofa_ 401 LC 402 (402)
T ss_dssp CC
T ss_pred CC
T ss_conf 89
|
| >d2g5da1 b.52.1.4 (A:40-441) Membrane-bound lytic murein transglycosylase A, MLTA {Neisseria gonorrhoeae [TaxId: 485]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double psi beta-barrel superfamily: Barwin-like endoglucanases family: MLTA-like domain: Membrane-bound lytic murein transglycosylase A, MLTA species: Neisseria gonorrhoeae [TaxId: 485]
Probab=100.00 E-value=0 Score=30324.58 Aligned_cols=1 Identities=0% Similarity=-0.393 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 p~~p~~~p~pa~~~~~~~~a~~~~vsf~~LpGW~~dd~~~al~af~~sC~~l~~~~~w~~~C~~a~~~~~~~~~aR~Ffe 80 (402)
T d2g5da1 1 PDRPAGIPDPAGTTVAGGGAVYTVVPHLSMPHWAAQDFAKSLQSFRLGCANLKNRQGWQDVCAQAFQTPIHSFQAKRFFE 80 (402)
T ss_dssp CCCCCCCCCCTTCEEEETTEEEEECCGGGSTTCTTCCHHHHHHHHHHHHHHHTTSTTCHHHHHHHHTSCSSHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 98887899997654567764234546888889740139999999999877503246789999999717998099999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~F~p~~v~~~g~~~Gl~TGYYEP~l~gS~~r~~~y~~PlY~~P~DLv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (402)
T d2g5da1 81 RYFTPWQVAGNGSLAGTVTGYYEPVLKGDGRRTERARFPIYGIPDDFISVPLPAGLRGGKNLVRIRQTGKNSGTIDNAGG 160 (402)
T ss_dssp HHEEEEEEEETTBSCEEEEEEEECEEEEESSCCSSCCEEEEBSCTTCEEEECC--------CEEECCCBTTBCC------
T ss_pred HHCEEEEEECCCCCCEEEEEEECEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 72789998407987525877403057653366888887734589532225555433322222222334455443334444
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~dl~~~~~~~~~~~~~gR~~~~~~vPY~~R~eI~~g~l~~~~~elaW~~Dpvd~FFLqIQGSGrl~l~dG~~~rvgY 240 (402)
T d2g5da1 161 THTADLSRFPITARTTAIKGRFEGSRFLPYHTRNQINGGALDGKAPILGYAEDPVELFFMHIQGSGRLKTPSGKYIRIGY 240 (402)
T ss_dssp -EEECTTTSCCCSCCSEEEEEEETTEEEECCCHHHHHTTTTTTSSCEEEEESCHHHHHHHHHHSCEEEECTTSCEEEEEE
T ss_pred CCCCCCCCCCCCCCCHHHEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEEECCHHHHHHEEECCCEEEEECCCCEEEEEE
T ss_conf 33354112563222101100102785134776999864875677745788378255352665263699937999899986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ag~NG~pY~sIGr~Li~~G~i~~~~~Smq~Ir~Wl~~nP~~~~ell~~NpsYVFFr~~~~~~~~GP~Ga~gvpLtp~rSi 320 (402)
T d2g5da1 241 ADKNEHPYVSIGRYMADKGYLKLGQTSMQGIKAYMRQNPQRLAEVLGQNPSYIFFRELAGSGGDGPVGALGTPLMGEYAG 320 (402)
T ss_dssp EEECCCCCCCHHHHHHTTTSSCTTSCSHHHHHHHHHHCGGGHHHHHTTCCCCEEEEEC-----CCCBCTTSSBCCTTSEE
T ss_pred CCCCCCCCEEHHHHHHHCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 36789965108999976698671128999999999979799999997499749988778888899864367756677046
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 AvD~~~iPlG~pv~l~t~~p~~~~~~~rL~iAQDTGgAIkG~~R~D~f~G~G~~Ag~~AG~mk~~G~~~~LlPk~~~p~~ 400 (402)
T d2g5da1 321 AIDRHYITLGAPLFVATAHPVTRKALNRLIMAQDTGSAIKGAVRVDYFWGYGDEAGELAGKQKTTGYVWQLLPNGMKPEY 400 (402)
T ss_dssp EECTTTSCTTCEEEEEEECTTTCSEEEEEEEEEEECTTCCSSSEEEEEEEESHHHHHHHHHCEEEEEEEEEEETTCCCCC
T ss_pred EECCCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCHHHHHHHHCCCCCEEEEEEECCCCCCCC
T ss_conf 61776257887389974577778850027998515765348861698751888999887452575259999528888677
Q ss_pred -C
Q ss_conf -9
Q 000711 482 -S 482 (1338)
Q Consensus 482 -s 482 (1338)
-
T Consensus 401 ~~ 402 (402)
T d2g5da1 401 RP 402 (402)
T ss_dssp CC
T ss_pred CC
T ss_conf 97
|
| >d1xk7a1 c.123.1.1 (A:4-405) Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-transferase family III (CaiB/BaiF) superfamily: CoA-transferase family III (CaiB/BaiF) family: CoA-transferase family III (CaiB/BaiF) domain: Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=30323.93 Aligned_cols=1 Identities=0% Similarity=-1.291 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~gPL~GirVld~~~~~agp~~~~~Lad~GAeVIkvE~p~~gd~~r~~~~~~~~~n~~K~si~ldl~~~~G~~~~~ 80 (402)
T d1xk7a1 1 LPMPKFGPLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFL 80 (402)
T ss_dssp CCCCCCSTTTTCEEEEECCSSHHHHHHHHHHHTTCEEEEEECSSSCCGGGGSSSHHHHHTTTCEEEEECTTSHHHHHHHH
T ss_pred CCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHHHHHHHH
T ss_conf 98899969999888883780289999999998299599989999997434588516773899859998693978999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~Lv~~aDv~i~n~rpg~~~~lGl~~~~L~~~nP~lI~~sisgfG~~~~gp~~~~~~~D~~~qA~sG~~~~~G~~~~p~~~ 160 (402)
T d1xk7a1 81 KLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQPMPA 160 (402)
T ss_dssp HHHTTCSEEEEECSSSHHHHTTCCHHHHHHHCTTCEEEEEESSCSSSCTTTTTSCCCHHHHHHHHTSGGGSEETTEECCC
T ss_pred HHHHHCCCCEEEECCCCCCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC
T ss_conf 98750587534101222113465421001002443213655565776765467777663212210000101455455433
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~d~~~g~~aa~ailaAL~~r~~TG~Gq~VdvSm~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~y~~~D 240 (402)
T d1xk7a1 161 FPYTADYFSGLTATTAALAALHKVRETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMSKGKDPYYAGCGLYKCAD 240 (402)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHTHHHHHHHHTTSCCCCCBBTTBCSSBTTEEEEEETT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
T ss_conf 44322123124431345777640345788665443432201344321111000123332222234677422458553146
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 G~i~i~~~~~~~~~~l~~~~g~~~l~~dp~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~t~~e~~~~l~~~gvp~apV~ 320 (402)
T d1xk7a1 241 GYIVMELVGITQIEECFKDIGLAHLLGTPEIPEGTQLIHRIECPYGPLVEEKLDAWLATHTIAEVKERFAELNIACAKVL 320 (402)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCGGGTTSSSSCTTCCCCBTTTSTTHHHHHHHHHHHHHTSCHHHHHHHHHHTTCEEEECC
T ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEECCC
T ss_conf 76211233222222201121001222322233322221000366778899999999865021145566550795010478
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~e~~~dpq~~~r~~~~~~~~~~~g~~~~p~~p~~fs~t~~~~~~~aP~lGeht~eIL~eLG~s~~eI~~L~~~gvi~~ 400 (402)
T d1xk7a1 321 TVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKFKNNPGQIWRGMPSHGMDTAAILKNIGYSENDIQELVSKGLAKV 400 (402)
T ss_dssp CGGGSTTCHHHHHHTCEEEEECTTSCEEEEECCSSCCSSSCCCCCCCCCCTTTTHHHHHHHTTCCHHHHHHHHHTTSEEC
T ss_pred CHHHHHHCHHHHHHCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCEEC
T ss_conf 99998779898971999988768997667305770158999887899999985499999986999999999998829868
Q ss_pred -C
Q ss_conf -9
Q 000711 482 -S 482 (1338)
Q Consensus 482 -s 482 (1338)
-
T Consensus 401 ~~ 402 (402)
T d1xk7a1 401 ED 402 (402)
T ss_dssp CC
T ss_pred CC
T ss_conf 89
|
| >d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: N-acylglucosamine (NAG) epimerase domain: N-acyl-D-glucosamine 2-epimerase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=0 Score=30322.89 Aligned_cols=1 Identities=0% Similarity=-0.793 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~l~~ilpfW~~~~~D~~~GGf~~~ld~dg~~~~~~k~~~~~~R~l~~fs~a~~~~~~~~~~~~ 80 (402)
T d1fp3a_ 1 MEKERETLQAWKERVGQELDRVMAFWLEHSHDREHGGFFTCLGRDGRVYDDLKYVWLQGRQVWMYCRLYRKLERFHRPEL 80 (402)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSBCTTTSSBCCCBCTTSCBSCCCEEHHHHHHHHHHHHHHHHHCGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 94168999999999999999999878855807678972143789998579886365549999999999997463489899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~a~~g~~~L~~~~~~d~~~Gg~~~~vd~dG~~~~~~k~~Yd~Af~l~a~a~~~~~tg~~~~~~~a~~~~~~i~~~~~~ 160 (402)
T d1fp3a_ 81 LDAAKAGGEFLLRHARVAPPEKKCAFVLTRDGRPVKVQRSIFSECFYTMAMNELWRVTAEARYQSEAVDMMDQIVHWVRE 160 (402)
T ss_dssp HHHHHHHHHHHHHHTBSSTTSCCBCSEECTTSCEEECCSSSHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999981883589998898878999967654564120899999899886039989999999999999998421
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~g~~~~~~~~~~~~~g~~~~m~l~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 240 (402)
T d1fp3a_ 161 DPSGLGRPQLPGAVASESMAVPMMLLCLVEQLGEEDEELAGRYAQLGHWCARRILQHVQRDGQAVLENVSEDGEELSGCL 240 (402)
T ss_dssp CGGGGCCCCCTTSCCEEETHHHHHHHHHHHHHHTTCHHHHHHTHHHHHHHHHHHHTTEETTTTEECSEEETTSCBCCHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf 56888741247875434354179999999997343430579999999999998875016541257764314667666834
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~i~pGh~~e~~wLll~a~~~~~~~~~~~~a~~~~~~~~~~~g~d~~~ggl~~~~~~~g~~~~~~~~~~k~~W~qaE~i 320 (402)
T d1fp3a_ 241 GRHQNPGHALEAGWFLLRHSSRSGDAKLRAHVIDTFLLLPFRSGWDADHGGLFYFQDADGLCPTQLEWAMKLWWPHSEAM 320 (402)
T ss_dssp HHEECHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTHHHHHHHBCTTTCSBCSCEETTSCCCSSTTTTCEEHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 47278502359999999999873990479999999999999829557899588875378886655441377787899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~a~l~ly~~tgd~~~l~~a~~l~~~~~~~f~D~~~G~W~~~~~~~g~~~~~~k~~p~~~~YH~~ral~~~~~~l~~~~~~ 400 (402)
T d1fp3a_ 321 IAFLMGYSESGDPALLRLFYQVAEYTFRQFRDPEYGEWFGYLNREGKVALTIKGGPFKGCFHVPRCLAMCEEMLSALLSR 400 (402)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHHTBCTTTSSBCCEECTTSCEEECCSSCSSCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999987049989999999999999986877999766743899989986677888898461899999999999999851
Q ss_pred -C
Q ss_conf -9
Q 000711 482 -S 482 (1338)
Q Consensus 482 -s 482 (1338)
+
T Consensus 401 ~~ 402 (402)
T d1fp3a_ 401 LA 402 (402)
T ss_dssp HC
T ss_pred CC
T ss_conf 39
|
| >d1z8oa1 a.104.1.1 (A:3-404) Cytochrome P450-ERYF {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cytochrome P450-ERYF species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=100.00 E-value=0 Score=30320.81 Aligned_cols=1 Identities=0% Similarity=-0.227 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~f~~dpy~~y~~lr~~gPv~~~~~~g~~~~vvt~~e~v~~vl~d~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 80 (402)
T d1z8oa1 1 TVPDLESDSFHVDWYRTYAELRETAPVTPVRFLGQDAWLVTGYDEAKAALSDLRLSSDPKKKYPGVEVEFPAYLGFPEDV 80 (402)
T ss_dssp CCCBTTSGGGTSSHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCTTEECCTTCCCTTCCCCCGGGTTCCHHH
T ss_pred CCCCCCCHHHHHCHHHHHHHHHHCCCEEEEEECCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 98787974566594999999983499789850895389988999999996497534483112565544564223442667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~l~~~dg~~H~~~R~~l~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 160 (402)
T d1z8oa1 81 RNYFATNMGTSDPPTHTRLRKLVSQEFTVRRVEAMRPRVEQITAELLDEVGDSGVVDIVDRFAHPLPIKVICELLGVDEK 160 (402)
T ss_dssp HHHHSSSGGGCCTTHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHHHHHTSCSSSEEEHHHHTTTHHHHHHHHHHTTCCGG
T ss_pred HHHHCCCCCCCCHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 77741562016577776420212210243205677888899999875203222223333212330344556666300377
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~d~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~aG 240 (402)
T d1z8oa1 161 YRGEFGRWSSEILVMDPERAEQRGQAAREVVNFILDLVERRRTEPGDDLLSALIRVQDDDDGRLSADELTSIALVLLLAG 240 (402)
T ss_dssp GTTTHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHCEETTTEECCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
T ss_conf 88888888889875065112566788899999999988999728887779999985664288787789888888873064
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~dTt~~~l~~~l~~l~~~P~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~R~~~~d~~~~g~~ip~Gt~v~~~~~~~~~d 320 (402)
T d1z8oa1 241 FEASVSLIGIGTYLLLTHPDQLALVRRDPSALPNAVEEILRYIAPPETTTRFAAEEVEIGGVAIPQYSTVLVANGAANRD 320 (402)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHCGGGHHHHHHHHHHHTCSSCCEEEEESSCEEETTEEECTTCEEEECHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf 54315678888888765058999975013445430155654220244332134567555784134543022334452168
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 p~~f~dP~~F~PeR~~~~~lpFG~G~r~C~G~~lA~~el~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~ 400 (402)
T d1z8oa1 321 PKQFPDPHRFDVTRDTRGHLSFGQGIHFCMGRPLAKLEGEVALRALFGRFPALSLGIDADDVVWRRSLLLRGIDHLPVRL 400 (402)
T ss_dssp TTTSSSTTSCCTTSCCTTCCTTCSSTTCCTTHHHHHHHHHHHHHHHHHHCTTCEESSCGGGCCCCCCSSSCCCSCCEEET
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEECCCCCCCCCCCEEEEE
T ss_conf 53278911228899999988989986578139999999999999999967977578887876352787668988557996
Q ss_pred -C
Q ss_conf -9
Q 000711 482 -S 482 (1338)
Q Consensus 482 -s 482 (1338)
-
T Consensus 401 ~~ 402 (402)
T d1z8oa1 401 DG 402 (402)
T ss_dssp TC
T ss_pred CC
T ss_conf 59
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=100.00 E-value=0 Score=30251.03 Aligned_cols=1 Identities=100% Similarity=0.770 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~pi~~lv~~ll~~A~~~~ASDIHi~~~~~~~~V~~RidG~L~~~~~~~~~~~~~l~~~~ 80 (401)
T d1p9ra_ 1 DFFSLAEELPQNEDLLESEDDAPIIKLINAMLGEAIKEGASDIHIETFEKTLSIRFRVDGVLREVLAPSRKLSSLLVSRV 80 (401)
T ss_dssp CHHHHHHC-------------CHHHHHHHHHHHHHHHHTCSEEEEEEETTEEEEEEEETTEEEEEECCCGGGHHHHHHHH
T ss_pred CHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEECCEEEECCCCCCCHHHHHHHHH
T ss_conf 95464312787344654257767999999999999982980599981788846999989998887888855699999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~a~~~~~~~~~~q~g~~~~~~~~~~i~~Rv~~~p~~~g~~~vlRl~~~~~~~~~l~~LG~~~~~~~~l~~l~~~~~Gl 160 (401)
T d1p9ra_ 81 KVMAKLDIAEKRVPQDGRISLRIGGRAVDVRVSTMPSSHGERVVMRLLDKNATRLDLHSLGMTAHNHDNFRRLIKRPHGI 160 (401)
T ss_dssp HHHTTCCTTCCSSCEEEEEEC-----CEEEEEEEECCTTSCEEEECCEETTTTCCCGGGSCCCHHHHHHHHHHHTSSSEE
T ss_pred HHHHHHHHHHHHHHCCCHHHHHCCCCEEEEEEEEECCHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHCE
T ss_conf 98513678887530120022313894488754442202344566543112332001443013577789999998641054
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 iLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~~~~~~q~~v~~~~~~~~~~~l~~~lR~dPDvi~igEiRd~~ 240 (401)
T d1p9ra_ 161 ILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLE 240 (401)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHH
T ss_pred EEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCCCHH
T ss_conf 89876787774477999866625787469996267434567887026558767799999999984138889845768759
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ta~~a~~aa~tGhlV~tTlHa~~a~~~~~Rl~~~~~~~~~l~~~l~~vv~QrLv~~lCp~Ck~~~~~~~~~~~~~~~~~~ 320 (401)
T d1p9ra_ 241 TAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFLISSSLLGVLAQRLVRTLCPDCKEPYEADKEQRKLFDSKKK 320 (401)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHHHHHHEEEEEEEEEEEEECTTTCEEEECCHHHHTTC-----
T ss_pred HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHCCCCCC
T ss_conf 99999999724985899833676676654321002445667777898874205342188867688999999962354545
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~~~~~~~GC~~C~~~Gy~GR~~v~Evl~~d~~l~~~I~~~~~~~~l~~~~~~g~~tl~~~a~~~v~~G~~s~eEv~R~ 400 (401)
T d1p9ra_ 321 EPLILYRATGCPKCNHKGYRGRTGIHELLLVDDALQELIHSEAGEQAMEKHIRATTPSIRDDGLDKVRQGITSLEEVMRG 400 (401)
T ss_dssp CCCEEEECCCCSSSCSSSEEEEEEEEEEEECCHHHHHHHHTTCCHHHHHHHHHTTCCCHHHHHHHHHHTTSSCHHHHHHH
T ss_pred CCEEEEECCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHC
T ss_conf 66379808996303799888732999998189999999984998999999998099029999999998599989998243
Q ss_pred C
Q ss_conf 9
Q 000711 482 S 482 (1338)
Q Consensus 482 s 482 (1338)
|
T Consensus 401 ~ 401 (401)
T d1p9ra_ 401 S 401 (401)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=30248.32 Aligned_cols=1 Identities=100% Similarity=2.563 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
|
T Consensus 1 ~~~m~~~~~~~~~~~l~~~~~~g~~r~~~~i~~~~g~~v~~~dG~~~l~f~s~dYLGl~~hp~v~~a~~~a~~~~g~~~~ 80 (401)
T d1fc4a_ 1 GSHMRGEFYQQLTNDLETARAEGLFKEERIITSAQQADITVADGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMA 80 (401)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCSCSSSEEEBTTSCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 96044899999999999999759987513304788884893499889998765402546899999999999998198865
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~sr~~~g~~~~~~~lE~~lA~~~g~e~al~~~SG~~An~~~i~~l~~~~d~i~~d~~~h~s~~~G~~~~~a~~~~~~~~d 160 (401)
T d1fc4a_ 81 SVRFICGTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANND 160 (401)
T ss_dssp SCHHHHCCBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECTTC
T ss_pred CCEEECCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCEEEECCCCHHHHHCCCCCCCCEEEEECCCC
T ss_conf 42131257088999999888761677447734445666789997457886899677643888705122575079975788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~di 240 (401)
T d1fc4a_ 161 MQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDI 240 (401)
T ss_dssp HHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSE
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEHHHHCCCCCCCCCCCCCHHCCCCCCCEE
T ss_conf 47899999985514567159997577789895565057898875428189800210145145799850101268888729
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 i~~tl~Ka~gg~~Gg~v~g~~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~g 320 (401)
T d1fc4a_ 241 ITGTLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAG 320 (401)
T ss_dssp EEEESSSTTCSSSCEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99651430156776111378789999871792665067888788998875431234689999999987899986401358
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~~~~~~pIv~v~~~~~~~a~~~~~~L~~~Gi~v~~i~~PtVp~g~~~lRi~~~a~hT~edId~~v~al~ev~~~lg~i 400 (401)
T d1fc4a_ 321 FTLAGADHAIIPVMLGDAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQLGVI 400 (401)
T ss_dssp CCBCCSSSSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 76379999879999799999999999999789059758899789998439999787799999999999999999984888
Q ss_pred C
Q ss_conf 9
Q 000711 482 S 482 (1338)
Q Consensus 482 s 482 (1338)
+
T Consensus 401 ~ 401 (401)
T d1fc4a_ 401 A 401 (401)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d1q5da_ a.104.1.1 (A:) Cytochrome P450epok {Sorangium cellulosum [TaxId: 56]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cytochrome P450epok species: Sorangium cellulosum [TaxId: 56]
Probab=100.00 E-value=0 Score=30247.15 Aligned_cols=1 Identities=100% Similarity=0.770 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
.
T Consensus 1 ~~~~~~p~~~~dP~~~~~~lr~~gPv~~~~~~~~~vvt~~~~v~~vl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (401)
T d1q5da_ 1 DFKPFAPGYAEDPFPAIERLREATPIFYWDEGRSWVLTRYHDVSAVFRDERFAVSREEWESSAEYSSAIPELSDMKKYGL 80 (401)
T ss_dssp CCCTTSTTTTTCCHHHHHHHHHHCSEEEETTTTEEEECSHHHHHHHHTCTTEECCGGGSTTHHHHHHSSGGGHHHHHHST
T ss_pred CCCCCCHHHHHCCHHHHHHHHHCCCEEEECCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCC
T ss_conf 97989867885949999999846998997999989983999999996598735475433454444655510233013651
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~dg~~h~~~Rk~l~~~fs~~~l~~~~~~i~~~~~~l~~~~~~~~~~d~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (401)
T d1q5da_ 81 FGLPPEDHARVRKLVNPSFTSRAIDLLRAEIQRTVDQLLDARSGQEEFDVVRDYAEGIPMRAISALLKVPAECDEKFRRF 160 (401)
T ss_dssp TTSCHHHHHHHHHHHGGGGSHHHHGGGHHHHHHHHHHHHHHHTTSSCEETTTTTGGGSHHHHHHHHTTCCGGGHHHHHHH
T ss_pred CCCCHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 46888889876320421134213566788889888888876531011111578776543101100001100237888888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~l~~l~~~~~~~~~~~~~~i~~~~~~~l~ag 240 (401)
T d1q5da_ 161 GSATARALGVGLVPRVDEETKTLVASVTEGLALLHGVLDERRRNPLENDVLTMLLQAEADGSRLSTKELVALVGAIIAAG 240 (401)
T ss_dssp HHHHHHHTTTTTSSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99999875112222101677888899999999999877754125644327889876304565207889999999987046
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~etta~~l~~~l~~L~~~p~~~e~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~~~~g~~ip~G~~v~~~~~~~~r 320 (401)
T d1q5da_ 241 TDTTIYLIAFAVLNLLRSPEALELVKAEPGLMRNALDEVLRFDNILRIGTVRFARQDLEYCGASIKKGEMVFLLIPSALR 320 (401)
T ss_dssp SHHHHHHHHHHHHHHHHCHHHHHHHHHCGGGHHHHHHHHHHHSCSBSSEEEEEESSCEEETTEEECTTCEEEEEHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC
T ss_conf 32024677778999975299999864465323343210000011134433323345620257666764067421002478
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 dp~~f~dP~~F~PeR~~~~~lpFg~G~r~C~G~~lA~~e~~~~la~ll~rf~~~~l~~~~~~~~~~~~r~~~~l~v~~~p 400 (401)
T d1q5da_ 321 DGTVFSRPDVFDVRRDTSASLAYGRGPHVCPGVSLARLEAEIAVGTIFRRFPEMKLKETPVFGYHPAFRNIESLNVILKP 400 (401)
T ss_dssp CTTTSSSTTSCCTTSCCTTCCTTCCGGGCCTTHHHHHHHHHHHHHHHHHHCTTCEECSCCEECCCSSBCCEEECEEESSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCEECCCCCCCCCCCCEEEEEC
T ss_conf 82227995434889999999998997558822999999999999999996799848899840678765686645399961
Q ss_pred C
Q ss_conf 9
Q 000711 482 S 482 (1338)
Q Consensus 482 s 482 (1338)
|
T Consensus 401 ~ 401 (401)
T d1q5da_ 401 S 401 (401)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: Regulator of chromosome condensation RCC1 domain: Regulator of chromosome condensation RCC1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=30246.83 Aligned_cols=1 Identities=100% Similarity=0.371 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~h~~~~~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~i~~ia~G~~h~~al~~~G~vy~wG~n~~GQLG 80 (401)
T d1a12a_ 1 KKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALG 80 (401)
T ss_dssp CCCCCCCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTC
T ss_pred CCCEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCEECCCEEECCCCCEEEEEECCCEEEEEECCCEEEEEECCCCCCCC
T ss_conf 93106678999789889999699988889999886503577908999929999189889999679989999589998877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g 160 (401)
T d1a12a_ 81 RDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASG 160 (401)
T ss_dssp SCCCSTTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEEC
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEC
T ss_conf 44655664235542354220022011100101000345311202145655544666775431001100168850699820
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~v~~g~~~~~~l~~~g~ 240 (401)
T d1a12a_ 161 NDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGH 240 (401)
T ss_dssp SSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCC
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEEEECCCEEEEEECCCE
T ss_conf 35225650378500346687662288875344567755544335652000035677778439999936876999955981
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 v~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~~P~~ 320 (401)
T d1a12a_ 241 VYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTL 320 (401)
T ss_dssp EEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEE
T ss_pred EEEECCCCEECCCCCCCCCCEECCCCCCCCCCCEEEEEEEEECCCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCEE
T ss_conf 86512221020354566310000010123554036999851012013561489788840334675678862333558888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 i~~~~~i~~Is~G~~hs~alt~dG~v~~WG~n~~GQLG~G~~~~~~~P~~v~~~~~~~~~v~~v~~G~~hs~~l~~d~~~ 400 (401)
T d1a12a_ 321 ISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKEQ 400 (401)
T ss_dssp CCSSSSEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEEECSSEEEEEEEECSC
T ss_pred CCCCCCEEEEEEECCEEEEEECCCEEEEEECCCCCCCCCCCCCCEECCEEEECCCCCCCEEEEEEECCCEEEEEEECCCC
T ss_conf 57999829999308879999489969999259988778999988860789643578998899999752439999979966
Q ss_pred C
Q ss_conf 9
Q 000711 482 S 482 (1338)
Q Consensus 482 s 482 (1338)
|
T Consensus 401 ~ 401 (401)
T d1a12a_ 401 S 401 (401)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: UDP-glucosyltransferase GtfB species: Amycolatopsis orientalis [TaxId: 31958]
Probab=100.00 E-value=0 Score=30246.31 Aligned_cols=1 Identities=0% Similarity=-1.091 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 mkil~~~~gt~Gh~~P~lala~~L~~~Gh~V~~~~~~~~~~~v~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (401)
T d1iira_ 1 MRVLLATCGSRGDTEPLVALAVRVRDLGADVRMCAPPDCAERLAEVGVPHVPVGPSARAPIQRAKPLTAEDVRRFTTEAI 80 (401)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEECCC-------CCSCCCHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCEEEECCCCHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 97999889872689999999999998799899996830677898769748977850654541035200799999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (401)
T d1iira_ 81 ATQFDEIPAAAEGCAAVVTTGLLAAAIGVRSVAEKLGIPYFYAFHCPSYVPSPYYPPPPLGEPSTQDTIDIPAQWERNNQ 160 (401)
T ss_dssp HHHHHHHHHHTTTCSEEEEESCHHHHHHHHHHHHHHTCCEEEEESSGGGSCCSSSCCCC---------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHH
T ss_conf 99999999976147642774124257888988887535422344565445532356412466542100001135566566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (401)
T d1iira_ 161 SAYQRYGGLLNSHRDAIGLPPVEDIFTFGYTDHPWVAADPVLAPLQPTDLDAVQTGAWILPDERPLSPELAAFLDAGPPP 240 (401)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCHHHHHHCSSCEECSCTTTSCCCCCSSCCEECCCCCCCCCCCCCHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCE
T ss_conf 77877778888999984476410233210231023235644467777654332236755676555677888763148975
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 i~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~V~hgG~~t~~Eal~~ 320 (401)
T d1iira_ 241 VYLGFGSLGAPADAVRVAIDAIRAHGRRVILSRGWADLVLPDDGADCFAIGEVNHQVLFGRVAAVIHHGGAGTTHVAARA 320 (401)
T ss_dssp EEEECC---CCHHHHHHHHHHHHHTTCCEEECTTCTTCCCSSCGGGEEECSSCCHHHHGGGSSEEEECCCHHHHHHHHHH
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEECCCHHHHHHHCCEEEECCCCHHHHHHHHH
T ss_conf 99715754665689999999999769807984267764233578978997025879999545899963771699999981
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 GvP~v~~P~~~DQ~~na~~l~~~G~g~~l~~~~~~~~~l~~ai~~~l~~~~~~~a~~~~~~~~~~~~~~aa~~i~~~i~r 400 (401)
T d1iira_ 321 GAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALATALTPETHARATAVAGTIRTDGAAVAARLLLDAVSR 400 (401)
T ss_dssp TCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHT
T ss_pred CCCEEECCCCCCHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_conf 99999806614179999999987988876847899999999999996979999999999998750839999999999846
Q ss_pred C
Q ss_conf 9
Q 000711 482 S 482 (1338)
Q Consensus 482 s 482 (1338)
-
T Consensus 401 ~ 401 (401)
T d1iira_ 401 E 401 (401)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: TDP-vancosaminyltransferase GftD species: Amycolatopsis orientalis [TaxId: 31958]
Probab=100.00 E-value=0 Score=30245.37 Aligned_cols=1 Identities=0% Similarity=-1.225 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 mrIl~~~~gt~Ghv~P~l~lA~~L~~rGh~V~~~t~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (401)
T d1rrva_ 1 MRVLLSVCGTRGDVEIGVALADRLKALGVQTRMCAPPAAEERLAEVGVPHVPVGLPQHMMLQEGMPPPPPEEEQRLAAMT 80 (401)
T ss_dssp CEEEEEEESCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCCEEECSCCGGGCCCTTSCCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHCCCEEEECCCCHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 94999889875689999999999998799899997834677898779748976870776421566543378999989999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~a~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (401)
T d1rrva_ 81 VEMQFDAVPGAAEGCAAVVAVGDLAAATGVRSVAEKLGLPFFYSVPSPVYLASPHLPPAYDEPTTPGVTDIRVLWEERAA 160 (401)
T ss_dssp HHHHHHHHHHHTTTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSCCSSSCCCBCSCCCTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999999999844898599982842668999999827974000000000102556423465556532001246788887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~v 240 (401)
T d1rrva_ 161 RFADRYGPTLNRRRAEIGLPPVEDVFGYGHGERPLLAADPVLAPLQPDVDAVQTGAWLLSDERPLPPELEAFLAAGSPPV 240 (401)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCSCHHHHTTCSSCEECSCTTTSCCCSSCCCEECCCCCCCCCCCCCHHHHHHHHSSSCCE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCHHHCCHHHHCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCEE
T ss_conf 77765478999999983785331255430354211011133203577788689788866655459989997522479839
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ll~~~~~~I~hgG~~t~~Eal~ 320 (401)
T d1rrva_ 241 HIGFGSSSGRGIADAAKVAVEAIRAQGRRVILSRGWTELVLPDDRDDCFAIDEVNFQALFRRVAAVIHHGSAGTEHVATR 320 (401)
T ss_dssp EECCTTCCSHHHHHHHHHHHHHHHHTTCCEEEECTTTTCCCSCCCTTEEEESSCCHHHHGGGSSEEEECCCHHHHHHHHH
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHCCEEEECCCCHHHHHHHH
T ss_conf 99878644578899999999998626974899505443455457898899731481777621248886177248999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~GvP~l~~P~~~DQ~~na~~v~~~G~g~~l~~~~~~~~~L~~ai~~vl~~~~r~~a~~~~~~~~~~g~~~aa~~ie~~~~ 400 (401)
T d1rrva_ 321 AGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESLSAALTTVLAPETRARAEAVAGMVLTDGAAAAADLVLAAVG 400 (401)
T ss_dssp HTCCEEECCCSBTHHHHHHHHHHHTSEEECSSSCCCHHHHHHHHHHHTSHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHH
T ss_pred HCCCEEEECCCCCHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_conf 39998980661208999999998798897574789999999999998497999999999998755179999999999857
Q ss_pred C
Q ss_conf 9
Q 000711 482 S 482 (1338)
Q Consensus 482 s 482 (1338)
-
T Consensus 401 r 401 (401)
T d1rrva_ 401 R 401 (401)
T ss_dssp C
T ss_pred C
T ss_conf 6
|
| >d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Terpenoid cyclases/Protein prenyltransferases family: Protein prenyltransferases domain: Protein farnesyltransferase, beta-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=30245.44 Aligned_cols=1 Identities=0% Similarity=-0.127 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~t~ts~~q~~~e~~~~~~~~~~~~~~~~~~~~L~r~~H~~y~~~~L~~lp~~~~~lD~~r 80 (401)
T d2h6fb1 1 EPLYSLRPEHARERLQDDSVETVTSIEQAKVEEKIQEVFSSYKFNHLVPRLVLQREKHFHYLKRGLRQLTDAYECLDASR 80 (401)
T ss_dssp CCCGGGSGGGGGGSCCCTTCCCHHHHHHHHHHHHHHHHHHTTCBTTBCCCCCCCHHHHHHHHHHHTTEECGGGGGGTTCH
T ss_pred CCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCC
T ss_conf 97345467664331468898637889999999999999987534037865532599999999999986988760625462
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~l~yw~l~~L~LL~~~~~~~~~~~ii~~l~~~q~~~GGF~g~pg~~~hla~Ty~Al~~L~ilg~~~~~~~idR~~i~~f 160 (401)
T d2h6fb1 81 PWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQY 160 (401)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHBCTTSSBBSSTTCCBCHHHHHHHHHHHHHHCCHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 99999999999985998538999999999999718999968999987433999999999997177521023339999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 L~slQ~pDGsF~~~~~ge~D~R~~Y~Av~i~~lL~~~~~~~~~~~~~~I~scQ~~dGGfg~~pg~EaHgg~TfCalAaL~ 240 (401)
T d2h6fb1 161 LYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALV 240 (401)
T ss_dssp HHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCCCTTTTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99951888980002367766212699999999958997778999999999806888874578788763539899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 lL~~~~~~d~~~l~~WL~~RQ~~~eGGF~GR~nKlvD~CYSfW~ga~l~lL~~~~~~~~~~~~~~~~~l~d~~~l~~yiL 320 (401)
T d2h6fb1 241 ILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYIL 320 (401)
T ss_dssp HHTCGGGSCHHHHHHHHHHTBCTTTCSBBSSTTSCBCTTHHHHTTTHHHHHHHHHHHTTCTTCCSSCCSSCHHHHHHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 84788645899999999973778778437887887635788899889999999861246631113333437999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~Q~~~GGf~d~Pg~~pD~yHT~y~L~gLSl~~~~~~~~~~~~~~~~~~~~~l~~~~P~~~i~~~~~~~~~~~f~~~p~ 400 (401)
T d2h6fb1 321 MCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHFGSGAMLHDVVLGVPENALQPTHPVYNIGPDKVIQATTYFLQKPV 400 (401)
T ss_dssp HHSBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHHEEEETTEEEECCCSSGGGCCCCCCTTTSSCHHHHHHHHHHHHTSCC
T ss_pred HHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 97478999948897899870088899999986577676676643235775346633798615889999999999985899
Q ss_pred C
Q ss_conf 9
Q 000711 482 S 482 (1338)
Q Consensus 482 s 482 (1338)
-
T Consensus 401 ~ 401 (401)
T d2h6fb1 401 P 401 (401)
T ss_dssp T
T ss_pred C
T ss_conf 9
|
| >d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Hormone binding domain of the atrial natriuretic peptide receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=30243.66 Aligned_cols=1 Identities=0% Similarity=-0.127 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~a~~~~~i~igvllP~tg~~~~~~~~~~~a~~lAv~~iN~~g~~~~~~~~g~~i~~~~~D~~~~~~~~~~~~~~l~~~~~ 80 (401)
T d1jdpa_ 1 EALPPQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNRALFSLVDRVAAARG 80 (401)
T ss_dssp CCCCCCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 99899722899997799940221678999999999999866786556789948999998289997999999999997366
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~v~~iiG~~~s~~~~a~~~~~~~~~ip~is~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~al~~~l~~~~~~~v~il~~ 160 (401)
T d1jdpa_ 81 AKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYS 160 (401)
T ss_dssp CCCSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 88089999987503678878888619854631445542122345677279831546889999999877517737999995
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~i~~~~~~~g~~~~~~~ 240 (401)
T d1jdpa_ 161 DDKLERNCYFTLEGVHEVFQEEGLHTSIYSFDETKDLDLEDIVRNIQASERVVIMCASSDTIRSIMLVAHRHGMTSGDYA 240 (401)
T ss_dssp CCSSSCHHHHHHHHHHHHHHHHTCEEEEEEECTTSCCCHHHHHHHHHHHCSEEEEESCHHHHHHHHHHHHHTTCTTTTCE
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 68652057899998888736534899740245676268999998632574069999346889999999998188888769
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~a~~~yDav 320 (401)
T d1jdpa_ 241 FFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQGLNMEDYVNMFVEGFHDAI 320 (401)
T ss_dssp EEEECSSCCCSTTTCTTCCSSTTHHHHHHHGGGEEEEEECCCCCHHHHHHHHHHHHHHHTTTCCCCSSCCHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCCHHHCCCCCHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 99633114643347301025542367888865414212458898689999999999984067776666207889999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~l~a~Al~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~Gdr~~~~~~~~~~~~~~g~~~~Vg~~~~~~~~~~~~ 400 (401)
T d1jdpa_ 321 LLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFEGIAGQVSIDANGDRYGDFSVIAMTDVEAGTQEVIGDYFGKEGRFEMR 400 (401)
T ss_dssp HHHHHHHHHHHHTTCCTTCHHHHHHHHSSEEEEETTEEEEECTTSBBCCEEEEEEEEETTTTEEEEEEEEETTTTEEEEC
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHCCEEECCCEEEEECCCCCCCCCEEEEEEEECCCCEEEEEEEEECCCCEEEEE
T ss_conf 99999999998568999889999999867917717668998999882576799999997898799999998997669974
Q ss_pred C
Q ss_conf 9
Q 000711 482 S 482 (1338)
Q Consensus 482 s 482 (1338)
=
T Consensus 401 ~ 401 (401)
T d1jdpa_ 401 P 401 (401)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=100.00 E-value=0 Score=30243.25 Aligned_cols=1 Identities=0% Similarity=0.172 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~p~d~i~~~~~~~~~d~~~~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~~~Y~~~~G~~~lr~ai 80 (401)
T d7aata_ 1 SSWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRAS 80 (401)
T ss_dssp CCSSTTCCCCCCCHHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 97010689799986999999983778999588617877688899898789999999996289888889977789999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 a~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~ 160 (401)
T d7aata_ 81 AELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSL 160 (401)
T ss_dssp HHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEE
T ss_pred HHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf 99984247865576753885462578899999876674358985599816777640258998599689985424446665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~ 240 (401)
T d7aata_ 161 DFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGI 240 (401)
T ss_dssp CHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTC
T ss_pred CHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEECCCHHHHCCCCCCCHHHHHHHHHHHC
T ss_conf 37888888722777618999647889855458999999999987356379998636144314886553356666532201
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~s~sk~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 320 (401)
T d7aata_ 241 DVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMAD 320 (401)
T ss_dssp CCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 13406751330005515531021261888889888888888764033563057888998841787889999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls~e~~~~L~~e~gV~~~pg~Ris~a~~~~~~i~~la~ai~~v~ 400 (401)
T d7aata_ 321 RIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPEQVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIHQVT 400 (401)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEECCCCHHHHHHHHHHCCEEECCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999999857988863577997589953979999999998299998897179852699888999999999974
Q ss_pred C
Q ss_conf 9
Q 000711 482 S 482 (1338)
Q Consensus 482 s 482 (1338)
-
T Consensus 401 k 401 (401)
T d7aata_ 401 K 401 (401)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d2r7da2 b.40.4.16 (A:3-403) Ribonuclease II family protein DR0020 {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: RNB domain-like domain: Ribonuclease II family protein DR0020 species: Deinococcus radiodurans [TaxId: 1299]
Probab=100.00 E-value=0 Score=30242.48 Aligned_cols=1 Identities=0% Similarity=-0.194 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~p~~~~~~~v~ve~~~~~~~~~~~i~~~lg~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ 80 (401)
T d2r7da2 1 QPELTPAQRTEVELLARGRADKSRVLRDLKLPETPEAAHALLLRLGVWDEARTPYADRLRAALNAVELPVPDFDPAEERL 80 (401)
T ss_dssp CCCCCHHHHHHHHHHHTTSCSCCHHHHHTTCCCSHHHHHHHHHHHTSSCTTCCCHHHHTTCCCSCCCCCCCCCCTTSCCE
T ss_pred CCCCCCCCEEEEEECCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 99899888899998123899973124522999996569999998199865566780999999863267888743334661
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 Dlr~l~~~tID~~~a~D~DDAisie~~~~g~~~l~VHIADVs~~v~~~s~Ld~eA~~R~tSvYlp~~~~pMLP~~ls~~~ 160 (401)
T d2r7da2 81 DLTHLPTFAIDDEGNQDPDDAVGVEDLGGGLTRLWVHVADVAALVAPDSPLDLEARARGATLYLPDRTIGMLPDELVAKA 160 (401)
T ss_dssp ECTTSCEEEEECTTCCCCCEEEEEEECSTTCEEEEEEEECGGGTCCTTSHHHHHHHHHCBCEECSSCEECSSCHHHHHHH
T ss_pred CCCCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEECCHHHHCCCCCHHHHHHHHHCCCCCCCCCEEECCCHHHHCCC
T ss_conf 52028679988998864421036787479968999961356662067776899999858464089972423758874132
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 SL~~~~~r~als~~~~ld~~g~i~~~~~~~s~I~~~~ltY~~v~~~~~~~~~~l~~l~~~~~~l~~~R~~~gal~~~~~~ 240 (401)
T d2r7da2 161 GLGLHEVSPALSICLDLDPDGNAEAVDVLLTRVKVQRLAYQEAQARLEAGEEPFVTLARLARASRRLREGEGALSIDLPE 240 (401)
T ss_dssp STTSSSSEEEEEEEEEECTTSCEEEEEEEEEEECEEEEEHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHTTCCCCCCCC
T ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 24567566541147887267872332488878998301277899886314136788888999999999866884335654
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~d~~~~~~~~~~~~~s~~lVeE~MilAN~~~A~~l~~~~~p~iyR~~~~p~~~~~~~~l~~~~~~~~~~~~a~ys~ 320 (401)
T d2r7da2 241 VRVKADETGASVFPLPKPEMRTVVQECMTLAGWGTAIFADDNEIPLPFATQDYPTREVAGDTLPAMWARRKTLARTRFQP 320 (401)
T ss_dssp EEEEEETTEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEECCCSSCCCCCSHHHHHHHHHHCCCEEEES
T ss_pred CEEEECCCCCCCCEEECCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCEEEECC
T ss_conf 20221367751002541312456676765301548999864368753103678824432110788887640044006758
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~~H~gLgl~~YthfTSPIRRY~DLivhrqL~a~L~~~~~~~~~~l~~~~~~~~~~~~~~~~~er~~~~~~~~~yl~~~ 400 (401)
T d2r7da2 321 SPGPHHGMGLDLYAQATSPMRRYLDLVVHQQLRAFLAGRDPLSSKVMAAHIAESQMNADATRQAERLSRRHHTLRFIAAQ 400 (401)
T ss_dssp SCCCBTTTTBSCCCCCSCTTTBHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 98867110678606269725405789999999999769999999999999999999999999999999999999999859
Q ss_pred C
Q ss_conf 9
Q 000711 482 S 482 (1338)
Q Consensus 482 s 482 (1338)
=
T Consensus 401 p 401 (401)
T d2r7da2 401 P 401 (401)
T ss_dssp T
T ss_pred C
T ss_conf 2
|
| >d1odoa_ a.104.1.1 (A:) Cyp154a1 monooxygenase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cyp154a1 monooxygenase species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=0 Score=30244.95 Aligned_cols=1 Identities=0% Similarity=0.537 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
.
T Consensus 1 ~~~~dp~~~d~~~~~~~lr~~Gpv~~~~~~g~~~vvv~~~~~v~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (401)
T d1odoa_ 1 ALVLDPTGADHHTEHRTLREGGPATWVDVLGVQAWSVSDPVLLKQLLTSSDVSKDARAHWPAFGEVVGTWPLALWVAVEN 80 (401)
T ss_dssp CEECCTTCTTHHHHHHHHHTTCSEEEEEETTEEEEEECCHHHHHHHTTCTTEESCHHHHCTTHHHHTTTCTTTHHHHCCS
T ss_pred CEECCCCCCCHHHHHHHHHHHCCEEEEECCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCC
T ss_conf 94358899981999999996399899964991199988999999996397724366666532223455541123304787
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 l~~~~g~~h~~~R~~l~~~fs~~~v~~~~~~i~~~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~g~~~~~~~~ 160 (401)
T d1odoa_ 81 MFTAYGPNHRKLRRLVAPAFSARRVDAMRPAVEAMVTGLVDRLAELPAGEPVDLRQELAYPLPIAVIGHLMGVPQDRRDG 160 (401)
T ss_dssp GGGCCHHHHHHHHHTTGGGGSHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCEEHHHHTTTHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHH
T ss_conf 62388599999999877651721477777788999999976422013332222321000000011221235653112123
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ei~~~~~~l~~~g~~t 240 (401)
T d1odoa_ 161 FRALVDGVFDTTLDQAEAQANTARLYEVLDQLIAAKRATPGDDMTSLLIAARDDEGDGDRLSPEELRDTLLLMISAGYET 240 (401)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHCC-----CCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 44455554310102578899999999999987664136776642232112333334689799999999999998656521
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~e~~R~~p~~~~~~~~~~~~d~~~~~G~~ip~Gt~v~~~~~~~hrd~ 320 (401)
T d1odoa_ 241 TVNVIDQAVHTLLTRPDQLALVRKGEVTWADVVEETLRHEPAVKHLPLRYAVTDIALPDGRTIARGEPILASYAAANRHP 320 (401)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHTSSCHHHHHHHHHHHSCSBSCEEEEEESSCEECTTSCEECTTCEEEECHHHHTTCT
T ss_pred HHHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCEEECCCCCCCCCHHHHHCCC
T ss_conf 02355543201343214431001233311000001111112455333322346525229779617952324488870772
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 321 ~~~~dp~~F~PeR~~~~~~pFG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~l~~~~~~~~~~~~~~~~~~~~lpv~~~ 400 (401)
T d1odoa_ 321 DWHEDADTFDATRTVKEHLAFGHGVHFCLGAPLARMEVTLALESLFGRFPDLRLADPAEELPPVPSLISNGHQRLPVLLH 400 (401)
T ss_dssp TTSTTTTSCCTTCSCCCCCTTCSSTTSCTTHHHHHHHHHHHHHHHHHHCTTCEESCTTSCCCBCSCSSBCCBSCCEEECC
T ss_pred CCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 22896543287878999987789884783599999999999999999779868899877771467875579874059983
Q ss_pred C
Q ss_conf 9
Q 000711 482 S 482 (1338)
Q Consensus 482 s 482 (1338)
+
T Consensus 401 ~ 401 (401)
T d1odoa_ 401 A 401 (401)
T ss_dssp -
T ss_pred C
T ss_conf 9
|
| >d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate transeliminase domain: Pectate transeliminase species: Erwinia chrysanthemi [TaxId: 556]
Probab=100.00 E-value=0 Score=30170.10 Aligned_cols=1 Identities=0% Similarity=0.470 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~YVs~~Gsd~~~Gs~~~p~~tIq~Ai~~a~~GDtI~v~~GtY~~~~~~~~~~~~~~~~~G~~~~ 80 (400)
T d1ru4a_ 1 ADCSSDLTSGISTKRIYYVAPNGNSSNNGSSFNAPMSFSAAMAAVNPGELILLKPGTYTIPYTQGKGNTITFNKSGKDGA 80 (400)
T ss_dssp CCCTTCTTTTCCCSCEEEECTTCCTTCCSSSTTSCBCHHHHHHHCCTTCEEEECSEEEECCCBTTBCCCEEECCCCBTTB
T ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCEEECCEEECCCEEEEEECCCCCCC
T ss_conf 97532000564447769997998679998722447889999983899599998695516651205753899723777897
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~i~i~~~~~~~~vi~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~n~~i~~~~~~g~~~~~~~ 160 (400)
T d1ru4a_ 81 PIYVAAANCGRAVFDFSFPDSQWVQASYGFYVTGDYWYFKGVEVTRAGYQGAYVIGSHNTFENTAFHHNRNTGLEINNGG 160 (400)
T ss_dssp CEEEEEGGGCCEEEECCCCTTCCCTTCCSEEECSSCEEEESEEEESCSSCSEEECSSSCEEESCEEESCSSCSEEECTTC
T ss_pred EEEEECCCCCEEEEECCCCCCCCCCCCCEEEEECCCEEEECCEEECCCCEEEEECCCCCCCCCCEEECCCCCEEEEECCC
T ss_conf 29996079972599587623343323431787447479944342067111222023421024526852775117885555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~G~~~~~~~~~~~i~nn~~~~n~~~~~~~~~~ 240 (400)
T d1ru4a_ 161 SYNTVINSDAYRNYDPKKNGSMADGFGPKQKQGPGNRFVGCRAWENSDDGFDLFDSPQKVVIENSWAFRNGINYWNDSAF 240 (400)
T ss_dssp CSCEEESCEEECCCCTTTTTSSCCSEEECTTCCSCCEEESCEEESCSSCSEECTTCCSCCEEESCEEESTTCCCSCCTTC
T ss_pred CCCEEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCEEECCEEEECCCCCEEEEECCCCEEEECEEEECCCCCCCCCCCC
T ss_conf 42179974677134565442222024689612566166433566426766368824898799775998654101456430
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~n~~~~n~~~g~~~~~~~~~~~i~nN~~~~n~~~~~~~~~~~~~~~~~~~nN~~~~~~~ 320 (400)
T d1ru4a_ 241 AGNGNGFKLGGNQAVGNHRITRSVAFGNVSKGFDQNNNAGGVTVINNTSYKNGINYGFGSNVQSGQKHYFRNNVSLSASV 320 (400)
T ss_dssp CCCCCSEECCCTTCCCCCEEESCEEESCSSEEEECTTCSSCCEEESCEEESSSEEEEECSCCCTTCCEEEESCEEESSCE
T ss_pred CCCCCEEECCCCCCCCCEEEEEEEEECCCCCCEEECCCCCCCCEECCEEECCCCCCCCCCCCCCCCCEEEEEEEEECCCE
T ss_conf 01373365047776665589877886366553040357664112265687255430343223567650798328834740
Q ss_pred -------------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------------------------s 482 (1338)
+
T Consensus 321 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~Spai~aG~~~~~~~~~G~~pDiGAyE~~ 400 (400)
T d1ru4a_ 321 TVSNADAKSNSWDTGPAASASDFVSLDTSLATVSRDNDGTLPETSLFRLSANSKLINAGTKESNISYSGSAPDLGAFERN 400 (400)
T ss_dssp EECSEEEESSTTTTSCCCCGGGBSBCCGGGGGCCCCTTCCCCCCSBTCBCTTCTTTTCSCCCTTCCCSTTSCCSSSCCCC
T ss_pred EEECCCCCCCEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 34134323522546730147761674643244656777767768884378998100487877788989986776777588
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=30168.69 Aligned_cols=1 Identities=0% Similarity=0.437 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~dl~ss~~~~~~~~~~~~~~l~~e~~~~i~~~~~~~~~~~~~~~i~~~l~~~~~~~l~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 1 NDLPSSFTGYFKKFNTGRKIISQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp CCHHHHHHHHHTTSCGGGCSSCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 96178899999877654004409899999998861777989999999997443677179998999997899999995888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~d~~l~~~l~~ 160 (400)
T d1tq4a_ 81 NEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISM 160 (400)
T ss_dssp TTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 67775678999887044553110689707998379854333449999987433226599996588887889999999997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~ 240 (400)
T d1tq4a_ 161 MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 240 (400)
T ss_dssp TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred CCCCEEEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 69987999708632101354322011227889999999999999874899897797337764515899999999998399
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~l~~~~~~~i~~K~~~~~~~i~~~a~~a~~~~~iP~p~~~~~~d~~~l~~~l~~y~~~fGlD~~sL~~lA~~ 320 (400)
T d1tq4a_ 241 YKRHNFMVSLPNITDSVIEKKRQFLKQRIWLEGFAADLVNIIPSLTFLLDSDLETLKKSMKFYRTVFGVDETSLQRLARD 320 (400)
T ss_dssp GGHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHTCCBSSCTTSSCCCHHHHHHHHHHHHHHHHHTTCSHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999998516657999999899999999999999734246886303201329999999999999809998999999999
Q ss_pred -------------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~~lka~iks~~~~~~~~~~~i~~~l~k~~~~~~~~~G~~~a~~~~f~~~~~l~~~~l~~~aedak~~l~~~~~~n 400 (400)
T d1tq4a_ 321 WEIEVDQVEAMIKSPAVFKPTDEETIQERLSRYIQEFCLANGYLLPKNSFLKEIFYLKYYFLDMVTEDAKTLLKEICLRN 400 (400)
T ss_dssp SSSCHHHHHHTCSHHHHTSSCCHHHHHHHHHHHHHHHHHHHCCSSSTTCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 29989999999708366555567899999999887883052389999999999999999999999999999999986559
|
| >d3ovwa_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) {Fusarium oxysporum [TaxId: 5507]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Concanavalin A-like lectins/glucanases superfamily: Concanavalin A-like lectins/glucanases family: Glycosyl hydrolase family 7 catalytic core domain: Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) species: Fusarium oxysporum [TaxId: 5507]
Probab=100.00 E-value=0 Score=30167.89 Aligned_cols=1 Identities=0% Similarity=-0.592 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 q~~~~t~E~HP~ltwq~CT~~ggCt~~~g~vV~D~nwrw~h~~~g~~~c~~gn~w~~~lCpd~~tCa~nC~ldGad~~~y 80 (400)
T d3ovwa_ 1 ETPDKAKEQHPKLETYRCTKASGCKKQTNYIVADAGIHGIRQKNGAGCGDWGQKPNATACPDEASCAKNCILSGMDSNAY 80 (400)
T ss_dssp CEECSSCCCCCEEEEEEEETTTEEEEEEEEEEECHHHHCEECTTSCBSCCTTSCCCTTTCSSHHHHHHHCEECCCCHHHH
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCEECCCEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf 98887676588523265058998586233499824733244058973234388565344887566676435237664555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~GVttsG~sLtl~~vt~~~~vGsRvYLl~~d~~~Yqmf~Llg~EfTFdVD~S~lpCGlNgALYfveM~adGg~s~~~~ 160 (400)
T d3ovwa_ 81 KNAGITTSGNKLRLQQLINNQLVSPRVYLLEENKKKYEMLHLTGTEFSFDVEMEKLPCGMNGALYLSEMPQDGGKSTSRN 160 (400)
T ss_dssp HHTTEEEETTEEEEESEETTEECCCEEEEECTTSSSBCEECCTTCEEEEEEECTTCCTTEEEEEEEECCCTTTTGGGCTT
T ss_pred CCEEEEECCCCEEEEEEECCCCCCCEEEEECCCCCCEEEEEECCCEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCC
T ss_conf 40569953881899857548832621899757877357899338678888633568764322565662167778666788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 n~aGAkYGtGYCDAQC~d~kfInG~aNv~g~GsCC~EmDIwEANs~a~a~TpH~C~~~g~~~C~g~~Cg~~g~CD~~GC~ 240 (400)
T d3ovwa_ 161 SKAGAYYGAGYCDAQCYVTPFINGVGNIKGQGVCCNELDIWEANSRATHIAPHPCSKPGLYGCTGDECGSSGICDKAGCG 240 (400)
T ss_dssp CCCTGGGTCCCCBTTCCBCSEETTEECTTCCEEECCEEEEEEECSSCEEEEEECBSSCSCEEECGGGGSTTSSBCSSCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf 76666367722113156243205621346655555641101110455320688656787336457767888860888867
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 fNpYR~g~~~FyG~G~~~tVDT~k~fTVVTQF~~~~~G~L~eIrR~YVQ~GkvI~n~~~~~~g~~~~~sit~~fC~~~~~ 320 (400)
T d3ovwa_ 241 WNHNRINVTDFYGRGKQYKVDSTRKFTVTSQFVANKQGDLIELHRHYIQDNKVIESAVVNISGPPKINFINDKYCAATGA 320 (400)
T ss_dssp BCGGGGTCTTSEESSTTSSEETTSCEEEEEEEEECTTSCEEEEEEEEEETTEEEECCCCCSSSSCSCSSBCHHHHHHTTC
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCEEEEEEEECCCCCCEEEEEEEEEECCEEECCCCCCCCCCCCCCCCCHHHHCCCCC
T ss_conf 67433488754878987142379973899788708985368998999609999668875677887677346677546786
Q ss_pred -------------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------------------------s 482 (1338)
.
T Consensus 321 ~~f~~~GGl~~mg~al~rGmVLv~SlWdd~~~~M~WLDsg~~GpC~~tsg~p~~ve~~~p~a~Vt~SNIKfG~I~STy~~ 400 (400)
T d3ovwa_ 321 NEYMRLGGTKQMGDAMSRGMVLAMSVWWSEGDFMAWLDQGVAGPCDATEGDPKNIVKVQPNPEVTFSNIRIGEIGSTSSV 400 (400)
T ss_dssp HHHHHTTHHHHHHHHHHHCEEEEEEEEECTTTTTHHHHBTTSCSBCSSTTSHHHHHHHCSSCEEEEEEEEEESTTCSCCC
T ss_pred CHHHHCCCHHHHHHHHCCCEEEEEEEEECCCCCCEECCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEECEECCCCCCCCC
T ss_conf 42443476889888850886999986847999866204898878888888855651328997799860768577763119
|
| >d1inpa_ e.7.1.1 (A:) Inositol polyphosphate 1-phosphatase {Cow (Bos taurus), brain [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Carbohydrate phosphatase superfamily: Carbohydrate phosphatase family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like domain: Inositol polyphosphate 1-phosphatase species: Cow (Bos taurus), brain [TaxId: 9913]
Probab=100.00 E-value=0 Score=30165.76 Aligned_cols=1 Identities=0% Similarity=-0.660 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~l~~~l~~aekAa~iar~~~~~~~l~~~~v~ek~~~~~~~k~~~D~VT~AD~~aq~~I~~~L~~~fP~~~~~IvGEE 80 (400)
T d1inpa_ 1 MSDILQELLRVSEKAANIARACRQQETLFQLLIEEKKEGEKNKKFAVDFKTLADVLVQEVIKENMENKFPGLGKKIFGEE 80 (400)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHSHHHHTCCCCSCCCCTTTTCCCCHHHHHHHHHHHHHHHHHHHHHSTTGGGGEEESS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECCC
T ss_conf 96899999999999999999998501687767643136534626799984189999999999999987869999988158
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~IDPIDGT~~ 160 (400)
T d1inpa_ 81 SNELTNDLGEKIIMRLGPTEEETVALLSKVLNGNKLASEALAKVVHQDVFFSDPALDSVEINIPQDILGIWVDPIDSTYQ 160 (400)
T ss_dssp CSEEECTTSCEEECCCCSSCSCHHHHHHHHTTTCTTHHHHHHHHHTCCCCCCCSSSSSCCCCCCGGGEEEEEEEEECHHH
T ss_pred CCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEECCCCCHH
T ss_conf 88654544311122024136666666543114542023342023231100011001232356787656299952758420
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 Fi~G~~~~~v~iaL~~~~~~~v~vlI~lal~~~G~Pv~GvI~~P~~~~~~~~~~~~G~~~~a~~g~Ga~~~~~~~~~~~~ 240 (400)
T d1inpa_ 161 YIKGSADITPNQGIFPSGLQCVTVLIGVYDIQTGVPLMGVINQPFVSQDLHTRRWKGQCYWGLSYLGTNIHSLLPPVSTR 240 (400)
T ss_dssp HHHCCCCCCCBTTBCSSSGGGCEEEEEEEETTTCCEEEEEEEEEEEEECTTTCCEEEEEEEEEESSSEEECCSCCTTSST
T ss_pred HCCCCCCCEEEEEHHCCCCCCCEEEEEEHHEECCEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 12699643255500126665313565201007897898475455446400023678428997437673236766665544
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~g~a~~k~~~VA~G~~D~yl~~~~~~~~WD~aA 320 (400)
T d1inpa_ 241 SNSEAQSQGTQNPSSEGSCRFSVVISTSEKETIKGALSHVCGERIFRAAGAGYKSLCVILGLADIYIFSEDTTFKWDSCA 320 (400)
T ss_dssp TTSSCSSCCCCBTTBTTSSSSCCEEEECTTCCSCCCCTTTTCCEEEECCCHHHHHHHHHHTSCSEEEECSSCCBHHHHHH
T ss_pred CCCCCCCEECCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHH
T ss_conf 44322201025675333454047850345389999999747954997558899999996899888995578998788799
Q ss_pred -------------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------------------------s 482 (1338)
.
T Consensus 321 g~~Il~eaGG~VtD~~G~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~N~~giIA~~~~~~h~~~l~~l~~~l~~~~~~~ 400 (400)
T d1inpa_ 321 AHAILRAMGGGMVDLKECLERNPDTGLDLPQLVYHVGNEGAAGVDQWANKGGLIAYRSEKQLETFLSRLLQHLAPVATHT 400 (400)
T ss_dssp HHHHHHTTTCEEEEHHHHHHSCTTSSCSTTBCCSSCCSTTTTTTCTTBCTTCEEEESCHHHHHHHTCCCTTTCCCCSCCC
T ss_pred HHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999978997987999962466544445210014443223553101556878997888999999999997633546789
|
| >d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase, central domain {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Glycosyltrehalose trehalohydrolase, central domain species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]
Probab=100.00 E-value=0 Score=30164.55 Aligned_cols=1 Identities=0% Similarity=-1.358 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~~~~viYe~~v~~f~~~Gd~~gi~~~ldyi~~LGv~~i~l~Pv~~~~~~~~~GY~~~d~~~vd~~~Gt~~dl 80 (400)
T d1eh9a3 1 FNNETFLKKEDLIIYEIHVGTFTPEGTFEGVIRKLDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYGGPEGF 80 (400)
T ss_dssp CCSCCSCCSSSCCEEEECTTTSSSSCSHHHHHHTHHHHHHHTCCEEEECCCBCCSSSCCCSTTCCCTTCBCSTTCCHHHH
T ss_pred CCCCCCCCCCCEEEEEEEHHHHCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 99877688768599998312307899999999875899975998899687676889999997877778858221999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 k~lv~~~h~~gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~v~~~l~d~~~~Wl~~~gvDGfR 160 (400)
T d1eh9a3 81 RKLVDEAHKKGLGVILDVVYNHVGPEGNYMVKLGPYFSQKYKTPWGLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFR 160 (400)
T ss_dssp HHHHHHHHHTTCEEEEEECCSCCCSSSCCHHHHSCCSCSSCCCSSSCCCCSSSTTHHHHHHHHHHHHHHHHHHSCCCCEE
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99999997637713542244642577850443100211234545564435565556079999999999887524663688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~Daa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (400)
T d1eh9a3 161 LDAVHAIIDTSPKHILEEIADVVHKYNRIVIAESDLNDPRVVNPKEKCGYNIDAQWVDDFHHSIHAYLTGERQGYYTDFG 240 (400)
T ss_dssp ETTGGGCCCCSSSCHHHHHHHHHHHTTCCEEECCCSCCTTTTSCGGGTCCCCSEEECHHHHHHHHHHHSCCCSGGGGGCC
T ss_pred EECHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCEECCCCCCCCCHHHHHHHCCCCCCHHHHHH
T ss_conf 60434415114565589999987533222110100468442564553352000212665310467665033210145444
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~a~a~~l~~pGi 320 (400)
T d1eh9a3 241 NLDDIVKSYKDVFVYDGKYSNFRRKTHGEPVGELDGCNFVVYIQNHDQVGNRGKGERIIKLVDRESYKIAAALYLLSPYI 320 (400)
T ss_dssp SHHHHHHHHHSSCSCSSEEETTTTEEECCCCCSCCGGGEECCSCCHHHHHTTTTCCCGGGGSCHHHHHHHHHHHHSSSSC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 35789987543211221478999874465233304400443122046553356401267776656778999999848997
Q ss_pred -------------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------------------------s 482 (1338)
+
T Consensus 321 P~iy~G~E~G~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~lRk~~pv~ 400 (400)
T d1eh9a3 321 PMIFMGEEYGEENPFYFFSDFSDSKLIQGVREGRKKENGQDTDPQDESTFNASKLSWKIDEEIFSFYKILIKMRKELSIA 400 (400)
T ss_dssp CEEESSGGGTCCCCCCCCCCCCSTTHHHHHHHHHHHHTCCCSCTTSHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHTCS
T ss_pred CEEECCHHHCCCCCCCCHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 78977853288898875010266877666676405766789876552346556677657899999999999999678699
|
| >d2olua2 e.3.1.1 (A:293-692) Penicillin-binding protein 2, PBP2 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta-lactamase/transpeptidase-like superfamily: beta-lactamase/transpeptidase-like family: beta-Lactamase/D-ala carboxypeptidase domain: Penicillin-binding protein 2, PBP2 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=30162.08 Aligned_cols=1 Identities=0% Similarity=-0.427 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~y~~~~d~v~~~l~~~~~~~~~~~~~~~~~G~~I~TTlD~~lQ~~ae~~l~~~~~~~~~~~~~a~vvvd~~TG~I 80 (400)
T d2olua2 1 TNQDSEYNSYVNFVKSELMNNKAFKDENLGNVLQSGIKIYTNMDKDVQKTLQNDVDNGSFYKNKDQQVGATILDSKTGGL 80 (400)
T ss_dssp CCCSGGGHHHHHHHHHHHTTSTTTTTSCHHHHTTBCCEEEECCCHHHHHHHHHHHHHCSCCSSTTEEEEEEEEETTTCBE
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCE
T ss_conf 99877557999999999986128766567786679988995889999999999998534214867528999998899959
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 lAm~~~~~y~~~~~~n~~~~~~~pGStfKp~v~~aaale~g~~~~~~~~~~~~~~~~~~~~~~n~~~~~~G~v~l~~Al~ 160 (400)
T d2olua2 81 VAISGGRDFKDVVNRNQATDPHPTGSSLKPFLAYGPAIENMKWATNHAIQDESSYQVDGSTFRNYDTKSHGTVSIYDALR 160 (400)
T ss_dssp EEEECSTTCCTTTSCCTTTSCEECGGGGHHHHTHHHHHHHTCCCTTBEEECCSSEEETTEEECCTTSCCCCEEEHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99997888883233321000003666556178899986458721110013334421111013366655553334322355
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~S~N~~~v~l~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~lg~g~~~vtplqlA~aya~iANgG~~~~P~~v~~i~~ 240 (400)
T d2olua2 161 QSFNIPALKAWQSVKQNAGNDAPKKFAAKLGLNYEGDIGPSEVLGGSASEFSPTQLASAFAAIANGGTYNNAHSIQKVVT 240 (400)
T ss_dssp TTCHHHHHHHHHHHHHHTCTTHHHHHHHHTTCCCSSCCCHHHHTTCTTCEECHHHHHHHHHHHHTTSEEECCBCEEEEEC
T ss_pred CCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEECCCEEEEEEECCCCCC
T ss_conf 66511123200010024567889999987088731121100000123456778886400100005964787674011356
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~g~~v~~~~~~~~v~s~~~a~~l~~~l~~vv~~~Gt~~~~~~~g~~vagKTGTa~~~~~~~~~~~~~~~~~~daWFvG~ 320 (400)
T d2olua2 241 RDGETIEYDHTSHKAMSDYTAYMLAEMLKGTFKPYGSAYGHGVSGVNMGAKTGTGTYGAETYSQYNLPDNAAKDVWINGF 320 (400)
T ss_dssp TTSCEEECCCCEEECSCHHHHHHHHHHHHGGGSTTSTTTTCCCSSCCCEEEEEEECCCHHHHHHTTCCTTEESEEEEEEE
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEE
T ss_conf 43232222222222113789999976521433541000111357814777611144576576544566687640799983
Q ss_pred -------------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~P~~~~~VwvG~d~~~~~~~~~~~~~~~~~~~a~i~~~~m~~~~~~~~~~f~~P~~v~~~~p~~~~~~~~~~~~~~~~~~ 400 (400)
T d2olua2 321 TPQYTMSVWMGFSKVKQYGENSFVGHSQQEYPQFLYENVMSKISSRDGEDFKRPSSVSGSIPSINVSGSQDNNTTNRSTH 400 (400)
T ss_dssp CSSEEEEEEEEESSCCGGGTTSEESHHHHTHHHHHHHHHHHHHSCCSCCCCCCCTTEESCTTCCEETTCCCSSBCCCCCC
T ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 69969999984688875676765676433579999999999975689666999998766777554789999998888889
|
| >d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Old yellow enzyme (OYE) species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]
Probab=100.00 E-value=0 Score=30091.16 Aligned_cols=1 Identities=0% Similarity=0.172 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
.
T Consensus 1 ~~~~~~~p~~~~~~~LFsP~~Ig~~~lkNRiv~apm~~~~a~~~G~~~~~d~~i~yy~~rA~GG~GlIi~e~~~V~~~g~ 80 (399)
T d1oyaa_ 1 SFVKDFKPQALGDTNLFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQAG 80 (399)
T ss_dssp CBCTTCCCCCCTTSGGGSCEEETTEEESSSEEBCCCCCCCCBTTTTBCCTTTHHHHHHHHTCSTTCEEEEEEEESSGGGC
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCEEECCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCEEECCCCC
T ss_conf 97455888889999999973289988637668777667757899897987999999999972890799964377776547
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~l~~d~~i~~~k~l~~~vh~~Ga~i~~QL~H~Gr~~~~~~~~~~g~~~~~~s~~~~~~~~~~~~~~~~~~~p~~ 160 (399)
T d1oyaa_ 81 GYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLWVLGWAAFPDNLARDGLRYDSASDNVFMDAEQEAKAKKANNPQHS 160 (399)
T ss_dssp CCTTSCBSSSHHHHHHHHHHHHHHHHTTCEEEEEEECCGGGSCHHHHHHTTCCEEESCSSCCSCHHHHHHHHHTTCCEEE
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 78998745787998888699999975201221233220234574211334445667543566777777666567887520
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 mt~~eI~~ii~~f~~AA~rA~~AGfDgVEIH~aHGYLl~qFLSp~tN~RtDeYGGSlENR~Rf~~Eii~aIR~~vg~~~I 240 (399)
T d1oyaa_ 161 LTKDEIKQYIKEYVQAAKNSIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKV 240 (399)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCC
T ss_conf 15677888888999999999980975676124377789986413035665224765665457799998754340222574
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 gvRls~~d~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~PV 320 (399)
T d1oyaa_ 241 GLRLSPYGVFNSMSGGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYSIWKGPV 320 (399)
T ss_dssp EEEECTTCCTTTCCGGGSTTHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTCSCTTSCTTSSCCCSCCTTHHHHHCCSCE
T ss_pred EEEECHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCE
T ss_conf 47853022025667741000577899999889874324543441122146677755454432111268999999829988
Q ss_pred ------------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------------9
Q 000711 482 ------------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 i~~G~i~~~~~~~~~i~~~~aDlV~~gR~liaDP~l~~K~~~G~~ln~~d~~~~~~~~~~gyt~~p~~~~~~~~~~~~~ 399 (399)
T d1oyaa_ 321 IRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFYQMSAHGYIDYPTYEEALKLGWDKK 399 (399)
T ss_dssp EEESSCTTCHHHHHHHTTSTTEEEECCHHHHHCTTHHHHHHHTCCCBCCCGGGSSCSSSTTTTCCCCHHHHHHTTSSCC
T ss_pred EEECCCCCHHHHHHHHHCCCCEEHHHHHHHHHCCCHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHCCCCCC
T ss_conf 9978989869999999759981848879999791299999729998999653267899988084845499997489999
|
| >d1s1fa_ a.104.1.1 (A:) Cyp158a2 {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cyp158a2 species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=0 Score=30090.89 Aligned_cols=1 Identities=0% Similarity=0.038 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~p~~~~~~~~~~~~~~~~p~~~~lr~~gPv~~~~~~~g~~~~wvvt~~e~v~~vl~d~~~~~~~~~~~~~~~~~~~~~ 80 (399)
T d1s1fa_ 1 QAVPPVRDWPAVDLPGSDFDPVLTELMREGPVTRISLPNGEGWAWLVTRHDDVRLVTNDPRFGREAVMDRQVTRLAPHFI 80 (399)
T ss_dssp CCSCCEEECCCCCCCTTCCCHHHHHHHHHCSEEEEECSBSBSCEEEECSHHHHHHHHTCTTEESTTTTTTTBCBSSSSCS
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99899899887789999989999999971996898416886588996599999999769764456555555444561001
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~Dg~~H~~~Rr~l~~~Fs~~~l~~~~~~i~~~~~~l~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~~~~~ 160 (399)
T d1s1fa_ 81 PARGAVGFLDPPDHTRLRRSVAAAFTARGVERVRERSRGMLDELVDAMLRAGPPADLTEAVLSPFPIAVICELMGVPATD 160 (399)
T ss_dssp SCTTSGGGCCTTHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHCSSEEHHHHTTTHHHHHHHHHHHTCCGGG
T ss_pred CCCCCHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHEEHHCCCCCHHH
T ss_conf 33452010586778999987484347412678999999999998620234565032024554433430001104883455
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~tT~ 240 (399)
T d1s1fa_ 161 RHSMHTWTQLILSSSHGAEVSERAKNEMNAYFSDLIGLRSDSAGEDVTSLLGAAVGRDEITLSEAVGLAVLLQIGGEAVT 240 (399)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHTHHHHHHHHHHHTSCCSCCCSHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 44566677887512232046788888899999999987630223201232001256655507777777888751342222
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~l~~~l~~l~~~p~~~~~~~~~~~~~~~~~~e~~r~~p~~~~~~~~R~~~~~~~l~G~~ip~Gt~V~~~~~~~~rdp~~ 320 (399)
T d1s1fa_ 241 NNSGQMFHLLLSRPELAERLRSEPEIRPRAIDELLRWIPHRNAVGLSRIALEDVEIKGVRIRAGDAVYVSYLAANRDPEV 320 (399)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHCGGGHHHHHHHHHHHSCCBSSCCCCEEESSCEEETTEEECTTCEEEECHHHHTTCTTT
T ss_pred CCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEECCCCEECCCCCCCCCCHHH
T ss_conf 20222122343085155431232013532122211246632223432100002540533533897501233334668110
Q ss_pred ------------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------------9
Q 000711 482 ------------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------------------------------------s 482 (1338)
+
T Consensus 321 ~~dP~~F~PeR~~~~~lpFG~G~r~C~G~~lA~~e~~~~l~~Ll~rf~~~~~~~~~~~~~~~~~~~~rg~~~lpv~~~~ 399 (399)
T d1s1fa_ 321 FPDPDRIDFERSPNPHVSFGFGPHYCPGGMLARLESELLVDAVLDRVPGLKLAVAPEDVPFKKGALIRGPEALPVTWHA 399 (399)
T ss_dssp SSSTTSCCTTC--CCCCTTCCSTTCCTTHHHHHHHHHHHHHHHHHHSTTCEESSCGGGSCBCSSCSBCCBSCCEEECCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEEECCCCCCCCEEEEEEEEC
T ss_conf 6995444889999997777988617815999999999999999997798788889666525168744287047899849
|
| >d2ah2a2 b.68.1.1 (A:1-399) Trypanosoma sialidase {Parasitic flagellate protozoan (Trypanosoma cruzi) [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Trypanosoma sialidase species: Parasitic flagellate protozoan (Trypanosoma cruzi) [TaxId: 5693]
Probab=100.00 E-value=0 Score=30088.97 Aligned_cols=1 Identities=0% Similarity=-1.091 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~syRIPsLv~~~GtlLA~ae~R~~~~~D~~~idiv~rRS~D~GkTWs~~ 80 (399)
T d2ah2a2 1 LAPGSSRVELFKRQSSKVPFEKDGKVTERVVHSFRLPALVNVDGVMVAIADARYETSFDNSLIDTVAKYSVDDGETWETQ 80 (399)
T ss_dssp CCTTCEEEEEECTTTCEEEEEETTEEEEEECSEEEEEEEEEETTEEEEEEEEESSCSCSSSCEEEEEEEESSTTSSCEEE
T ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEECEEEEEECCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCE
T ss_conf 98886434203788765775568988985699991308999899999999179888998720378998532788578762
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~v~~~~~~~~~~~~dP~~v~d~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~~~~~~g~tWs~p~~i~ 160 (399)
T d2ah2a2 81 IAIKNSRASSVSRVVDPTVIVKGNKLYVLVGSYNSSRSYWTSHGDARDWDILLAVGEVTKSTAGGKITASIKWGSPVSLK 160 (399)
T ss_dssp EEECCCCSSTTCEEEEEEEEEETTEEEEEEEEESSCCSCGGGCSSSTTEEEEEEEEEEEEECGGGSCEEEEEECCCEECG
T ss_pred EEEECCCCCCCCCCCCCEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 89724777776666688599849969999997658886221125788876258977998646798366773258832056
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~g~~~gi~~~~GrLv~p~~~~~~~~~~~s~~iySdD~G~TW~~g~~~~~~~~~~~~v~~~dG~l 240 (399)
T d2ah2a2 161 EFFPAEMEGMHTNQFLGGAGVAIVASNGNLVYPVQVTNKKKQVFSKIFYSEDEGKTWKFGKGRSAFGCSEPVALEWEGKL 240 (399)
T ss_dssp GGSCSEETTEEEEEEEECSEECEECTTSCEEEEEEEEETTCCEEEEEEEESSTTSSCEECSCCCCTTCEEEEEEEETTEE
T ss_pred CCCCCCCCCCCCCEECCCCCCEEEECCCCEECCEEEECCCCCEEEEEEEECCCCCEEEECCCCCCCCCCCCCEECCCCEE
T ss_conf 53465335753100526775303304863731337534887468899995899851683465589875566300358818
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ll~~R~~~g~r~v~~S~DgG~TW~~~~~~~~~v~~~~~~~~~~~~~~~li~~~~~~~~~lLfsnp~~~~~~~~r~~l~l~ 320 (399)
T d2ah2a2 241 IINTRVDYRRRLVYESSDMGNTWLEAVGTLSRVWGPSPKSNQPGSQSSFTAVTIEGMRVMLFTHPLNFKGRWLRDRLNLW 320 (399)
T ss_dssp EEEEECTTSCCCEEEESSTTSSCEECTTTTTTCBCSSTTSCSCCCCCCEEEEEETTEEEEEEEEECCSSCTTCCBCEEEE
T ss_pred EEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEE
T ss_conf 99876278740699974898625433454433437776667874453135741389729999798886454435642899
Q ss_pred ------------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------------9
Q 000711 482 ------------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------------------------------------s 482 (1338)
+
T Consensus 321 ~Sdd~g~~w~~~~~i~~g~saYS~L~~~dg~ig~lYE~~~~~~~~i~f~rlT~el~~ik~v~~~w~~~d~~~~~~~~~~ 399 (399)
T d2ah2a2 321 LTDNQRIYNVGQVSIGDENSAYSSVLYKDDKLYCLHEINSNEVYSLVFARLVGELRIIKSVLQSWKNWDSHLSSICTPA 399 (399)
T ss_dssp EESSSCEEEEEECSCTTCBCCCEEEEEETTEEEEEEEEEETTEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred EECCCCCCCCCCEEECCCCCCCCEEEEECCEEEEEEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 8579984214722855898542576758998999998589970059983687899999999998987547874478899
|
| >d1jfba_ a.104.1.1 (A:) Cytochrome P450-NOR, nitric reductase {Fungus (Fusarium oxysporum) [TaxId: 5507]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cytochrome P450-NOR, nitric reductase species: Fungus (Fusarium oxysporum) [TaxId: 5507]
Probab=100.00 E-value=0 Score=30088.95 Aligned_cols=1 Identities=0% Similarity=-0.759 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~p~~~~~~~dP~~~~~~Lr~~gPv~~~~~~~g~~~~vvt~~~dv~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (399)
T d1jfba_ 1 APSFPFSRASGPEPPAEFAKLRATNPVSQVKLFDGSLAWLVTKHKDVCFVATSEKLSKVRTRQGFPELSASGKQAAKAKP 80 (399)
T ss_dssp CCBSSCCCSSTTSCCTHHHHHHHHCSEEEEECTTSCEEEEECSHHHHHHHHHCTTEECCTTSTTCCCCSHHHHHHTTSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99899898766596899999996399688763789569997699999999769763547654567654544211012477
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~l~~~dg~~h~~~R~~~~~~fs~~~l~~~~~~i~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~ 160 (399)
T d1jfba_ 81 TFVDMDPPEHMHQRSMVEPTFTPEAVKNLQPYIQRTVDDLLEQMKQKGCANGPVDLVKEFALPVPSYIIYTLLGVPFNDL 160 (399)
T ss_dssp CGGGCCTTHHHHHHTTTGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHCSTTSCEEHHHHTTTHHHHHHHHHHHTCCGGGH
T ss_pred CHHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 32226869999987400764566532111026789899887454321244431024566655667788887651000036
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~d~~~~~~~~~~~~~~~~~~ei~~~~~~~~~ag~~tt 240 (399)
T d1jfba_ 161 EYLTQQNAIRTNGSSTAREASAANQELLDYLAILVEQRLVEPKDDIISKLCTEQVKPGNIDKSDAVQIAFLLLVAGNATM 240 (399)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHTTTTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHH
T ss_conf 78888766531000027899999999999999999998630245544322222223577762112212334322002015
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~l~~~~~~L~~~pe~~~~L~~e~~~~~~~~~e~lr~~~~~~~~~~R~~~~~~~~~g~~ip~G~~V~~~~~~~~~dp~~ 320 (399)
T d1jfba_ 241 VNMIALGVATLAQHPDQLAQLKANPSLAPQFVEELCRYHTASALAIKRTAKEDVMIGDKLVRANEGIIASNQSANRDEEV 320 (399)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHCGGGHHHHHHHHHHHSCSCCSCCEEEESSCEEETTEEECTTCEEEECHHHHTTCTTT
T ss_pred HHHHHHHHHHHHHCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHH
T ss_conf 66999999998456589999741345321101101232223433333222013334577676653211114451578422
Q ss_pred ------------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------------9
Q 000711 482 ------------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------------------------------------s 482 (1338)
=
T Consensus 321 ~~dP~~F~PeR~~~~~~~lpFG~G~r~C~G~~lA~~el~~~l~~Ll~rfp~~~l~~~~~~~~~~~~~~~~g~~~lpv~~ 399 (399)
T d1jfba_ 321 FENPDEFNMNRKWPPQDPLGFGFGDHRCIAEHLAKAELTTVFSTLYQKFPDLKVAVPLGKINYTPLNRDVGIVDLPVIF 399 (399)
T ss_dssp SSSTTSCCTTCCCCSSCCCTTCCGGGSCTTHHHHHHHHHHHHHHHHHHCTTCEESSCGGGCEECCTTSCSCEEECEEEC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEECCCCCCCCCCCCEEEC
T ss_conf 7996445868889999886889997368069999999999999999967967899887776467787777871351039
|
| >d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate lyase-like domain: Pectate lyase species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=30087.09 Aligned_cols=1 Identities=0% Similarity=0.470 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~G~As~~~gttGG~~a~~~~v~~v~t~~el~~~l~~~~~~~P~vI~~~gti~~~~~~~~~~~~~~~~~~ 80 (399)
T d1bn8a_ 1 ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKD 80 (399)
T ss_dssp CCGGGCCCCTTSSGGGSTTCCCTTTTCCGGGEEEECSHHHHHHHHCCTTCCSCEEEEECSEEESSBCTTCCBCCHHHHCC
T ss_pred CCCHHHCCCCCCCEEECCCCCCCCCCCCCCCEEECCCHHHHHHHHHHCCCCCCEEEEECCEEECCCCCCCCCCCCCCCCC
T ss_conf 95211113688750504898677887787746830889999999862369986699986679425665654444454334
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~SNkTIiG~G~~~~i~g~gl~i~a~NVIirnl~i~ 160 (399)
T d1bn8a_ 81 PEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQ 160 (399)
T ss_dssp TTCCHHHHHHHTCHHHHCSSCCCSHHHHHHHHHHHHHHHHHEEEECSSEEEEECTTCCEEESCEEEECSEEEEEESCEEE
T ss_pred CCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCCEEECCEEEEECCEEEEECEEEE
T ss_conf 33353322234574342034666654322111021435522785279864984589708954579983746999592997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~DaI~i~~s~~VWIDH~t~s~~~~e~~~~~~~~~~~~~~~Dg~lDi~~gs~~VTvS~n 240 (399)
T d1bn8a_ 161 DAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYN 240 (399)
T ss_dssp CCCCSSCEEETTSSSSCEEECCCCSEEEESCEEEEEESCEEECTTCCGGGCCEETTEECCCCCCSEEEETTCEEEEEESC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEECC
T ss_conf 17466666655666556767778658986686589988660267754444544456653333451653146404995774
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~f~~h~k~~L~G~~d~~~~d~g~~~vT~hhN~f~~~~~R~Prvr~g~vHv~NNy~~n~~~~~~~~~~ya~~~~~~a~il~ 320 (399)
T d1bn8a_ 241 YYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYA 320 (399)
T ss_dssp EEEEEEECCEECCCTTCGGGTTCCCEEEESCEEEEEEECSSEESSCEEEEESCEEECCTTCSSSCCCCSEEECTTCEEEE
T ss_pred CCCCCCCEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCEEECCCCCCCCCCCEEECCCCCCEEEE
T ss_conf 15687524675678876434687359999327247645686303557888851767787655410002212456746999
Q ss_pred ------------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------------9
Q 000711 482 ------------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 EgN~F~~~~~~~~~~~~~~~~g~~~~~~gn~~~g~~~~~~~~~~~~~~~~~~p~y~y~~~~A~~v~~~V~a~AGAGkl~ 399 (399)
T d1bn8a_ 321 QNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN 399 (399)
T ss_dssp ESCEEECTTCCSGGGEEECTTCCBCEEESCEETTEECCHHHHTTCBSCCSCCCCSCCCCCCHHHHHHHHHHHCSTTSCC
T ss_pred EEEEEECCCCCCCCEECCCCCCCEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 8148878888655230102688459607847648453676676746565323456533479999998765258976159
|
| >d1vpea_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=30022.10 Aligned_cols=1 Identities=0% Similarity=0.105 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~kltl~d~~l~~k~Vl~R~D~NvPi~~g~i~d~~RI~~~~pTI~~l~~~~akvil~SH~GRP~g~~~~~~Sl~~~~~~L~ 80 (398)
T d1vpea_ 1 EKMTIRDVDLKGKRVIMRVDFNVPVKDGVVQDDTRIRAALPTIKYALEQGAKVILLSHLGRPKGEPSPEFSLAPVAKRLS 80 (398)
T ss_dssp CBCBGGGSCCTTCEEEEECCCCCCEETTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCSSCCGGGCSHHHHHHHH
T ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 98762004847998999931477533995887289999999999999789989998378999998887668799999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~l~~~v~f~~d~~~~~~~~~~~~l~~g~i~lLEN~Rf~~~E~~n~~~f~k~La~l~DiyVnDAFg~sHR~haS~~gi~~ 160 (398)
T d1vpea_ 81 ELLGKEVKFVPAVVGDEVKKAVEELKEGEVLLLENTRFHPGETKNDPELAKFWASLADIHVNDAFGTAHRAHASNVGIAQ 160 (398)
T ss_dssp HHHTSCCEEESCSSSHHHHHHHHTCCTTEEEEECCGGGSTHHHHTCHHHHHHHHTTCSEEEECCGGGTTSCCTTTTGGGG
T ss_pred HHHCCEEEEEECCCCHHHHHHHHCCCCCCEEEEHHHHHCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHCCCCCEECHHH
T ss_conf 63164079850368658899861578876897244442432333247799998605560342543566515875011345
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~lps~aG~l~ekEi~~L~k~l~~~~~P~~aIlGGaKisdKi~~i~~L~~k~D~iiigG~~antfL~a~G~~iG~sl~e~~ 240 (398)
T d1vpea_ 161 FIPSVAGFLMEKEIKFLSKVTYNPEKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEED 240 (398)
T ss_dssp TSCEEECHHHHHHHHHHHHHHHCCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTTHHHHHHHTSCCCTTSCCCGG
T ss_pred HCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCEEEECCHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 46101147778789876422101467517996157635079999988875022232423789999974997788753412
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~i~~~a~~~~~~i~lP~d~~v~~~~~~~~~~~~~~~~~~i~~~~~ilDIG~~Ti~~~~~~I~~aktI~WNGP~G 320 (398)
T d1vpea_ 241 KIDLAKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFKQKLSDAKTVVWNGPMG 320 (398)
T ss_dssp GHHHHHHHHHHHHHTTCEEECCSEEEEESSCSTTCCCEEEETTTCCCTTCEEEEECHHHHHHHHHHHTTCSEEEEESCSS
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHEEECCCCCCCCCCEEECCCCCCCCCCEEECCCCCHHHHHHHHHCCCCEEEEECCCC
T ss_conf 56789999987665288511001012110003566520213124798765321366500899998745576799974612
Q ss_pred -----------------------------------------------------------------------------C
Q ss_conf -----------------------------------------------------------------------------9
Q 000711 482 -----------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------------------------------------------s 482 (1338)
+
T Consensus 321 ~fE~~~F~~GT~~l~~~ia~~t~~~~~sIiGGGdT~aai~~~g~~~~f~hvSTGGGA~Le~L~G~~LPgi~aL~~~~a 398 (398)
T d1vpea_ 321 VFEIDDFAEGTKQVALAIAALTEKGAITVVGGGDSAAAVNKFGLEDKFSHVSTGGGASLEFLEGKELPGIASMRIKKA 398 (398)
T ss_dssp CTTSGGGCHHHHHHHHHHHHHHHTTCEEEEESHHHHHHHHHTTCGGGSSEEESCHHHHHHHHTSSCCHHHHTSCBCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCCCEEEECCHHHHHHHHCCCCCHHHHHHHHCCC
T ss_conf 011662417999999999987238998999178999999972986796089677899999987999718999863549
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=100.00 E-value=0 Score=30019.65 Aligned_cols=1 Identities=0% Similarity=-1.756 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 m~~~~~~~~~~T~avH~G~~~~~~~~~~av~~PI~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~nPt~~~LE~~la~LE 80 (398)
T d1qgna_ 1 MKYASFLNSDGSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALE 80 (398)
T ss_dssp -CCCTTCCSHHHHHHHTTTTTCCSSCCSBSSCCBCCCSBBCBSSHHHHHHHHTTSSCCCCBGGGCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEECCCCEEECCHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHH
T ss_conf 98534579976579968976898888899618830777578089899998743776796443998868999999999982
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 gg~~a~~~sSGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~t~~v~~E 160 (398)
T d1qgna_ 81 GAESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELALNQKKVNLFFTE 160 (398)
T ss_dssp TCSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSCHHHHHHHHHHSCEEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEECC
T ss_conf 99348896486468888876303455432322221011333210343456643222442210233432103563179705
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 spsNP~l~v~Di~~ia~ia~~~g~~~vVDnT~atP~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~ 240 (398)
T d1qgna_ 161 SPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNL 240 (398)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHCCCEEEECCEEECCCCCCCHHHCCCEEEEECHHHCCCCCCEEEHHHCCHHHHHHHHHHH
T ss_conf 74300024321799999886449879961502144557722317989998100015765311100100013343221111
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~G~~l~p~~a~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~ 320 (398)
T d1qgna_ 241 HHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVD 320 (398)
T ss_dssp HHHHCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEES
T ss_pred CCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHCCCCCCEEEEEEC
T ss_conf 03677748979999998333477889999889999999999739882005788888993365554325898720466643
Q ss_pred -----------------------------------------------------------------------------C
Q ss_conf -----------------------------------------------------------------------------9
Q 000711 482 -----------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 g~~~~a~~f~~~L~l~~~a~SlGg~~SLi~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGlEd~eDLi~Dl~~AL~~i 398 (398)
T d1qgna_ 321 GDLLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGVEDFDDLKADILQALDSI 398 (398)
T ss_dssp SCHHHHHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCSSCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHCCCCCEEEECCCCCCCEEECCCHHCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCC
T ss_conf 999999999972885626268788761121750113100899999965989297999761089999999999998429
|
| >d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A (TM0820) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: NADH-dependent butanol dehydrogenase A (TM0820) species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=30013.86 Aligned_cols=1 Identities=0% Similarity=-0.427 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~M~~f~f~~p~~i~~G~g~~~~l~~~l~~~g~~rvliVt~~~~~~~~g~~~~l~~~L~~~gi~~~~f~~v~~~pt~~~ 80 (398)
T d1vlja_ 1 HHHMENFVFHNPTKIVFGRGTIPKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSK 80 (398)
T ss_dssp CCCCCCEEECCCCEEEESTTCGGGHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHH
T ss_pred CCCCCCEEEECCCEEEECCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHH
T ss_conf 99888728758986998549999999999965998489998974787731999999999865991999867159989899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 v~~~~~~~~~~~~D~IIavGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~iPTt~gtgse~t~~avi~~~~ 160 (398)
T d1vlja_ 81 VHEAVEVAKKEKVEAVLGVGGGSVVDSAKAVAAGALYEGDIWDAFIGKYQIEKALPIFDVLTISATGTEMNGNAVITNEK 160 (398)
T ss_dssp HHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTCSSCGGGGGGTSCCCCCCCCEEEEECSCSSCGGGSSEEEEEETT
T ss_pred HHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCEEEEECCCCCCEECCCCCEEEECC
T ss_conf 99876411456676688448863112788889886414556776436644367787335414654432113552132001
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~K~~~~~~~~~p~~~i~Dp~l~~~~P~~~~~~~~~Dal~h~~E~~~s~~~~~~s~~~a~~~~~~~~~~l~~~~~~~~~ 240 (398)
T d1vlja_ 161 TKEKYGVSSKALYPKVSIIDPSVQFTLPKEQTVYGAVDAISHILEYYFDGSSPEISNEIAEGTIRTIMKMTERLIEKPDD 240 (398)
T ss_dssp TTEEEEEECGGGSCSEEEECGGGGGGSCHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred CCCCCEEEECCCCCEEEEEEHHHCCCCCCHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 25420232012443169985564077740001131266998866531021256434577899988740233664038987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~ar~~l~~a~~~a~~~~~~~~~~~~~g~~H~l~h~l~~~~~v~HG~~~ai~lp~v~~~~~~~~~~~~~~la~~l~~~~~ 320 (398)
T d1vlja_ 241 YEARANLAWSATIALNGTMAVGRRGGEWACHRIEHSLSALYDIAHGAGLAIVFPAWMKYVYRKNPAQFERFAKKIFGFEG 320 (398)
T ss_dssp HHHHHHHHHHHHHHTSSTTTTTSCSCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHGGGSHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCC
T ss_conf 99987667789988888876530576402111112113455877022024016789999987574689999999738899
Q ss_pred -----------------------------------------------------------------------------C
Q ss_conf -----------------------------------------------------------------------------9
Q 000711 482 -----------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~e~~~~~~~~l~~~~~~lglP~~L~elGi~~~~i~~ia~~a~~~~~~~~npr~~~~~~~~~l~~e~i~~Il~~A~~ 398 (398)
T d1vlja_ 321 EGEELILKGIEAFKNWLKKVGAPVSLKDAGIPEEDIDKIVDNVMLLVEKNLKPKGASLGRIMVLEREDVREILKLAAK 398 (398)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCCSTGGGTCCGGGHHHHHHHHHHHHHHTTGGGTCCSCSSSCCCHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 819999999999999999859999989939999999999999996766427987676213334899999999999659
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=100.00 E-value=0 Score=29942.69 Aligned_cols=1 Identities=0% Similarity=-0.792 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~d~k~~~f~T~~ih~G~~~~~~~g~v~pPI~~sST~~~~~~~~~~~~~~~~~~~~~Y~R~~nPT~~~LE~~la~LEgg~~ 80 (397)
T d1y4ia1 1 SDCRTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGEA 80 (397)
T ss_dssp CCGGGSCHHHHHHHTTCCCCTTTCCSSCCCCCCSCCCCSSHHHHHHHHHSCSSSSCCCTTSCHHHHHHHHHHHHHHTCSE
T ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99888981100376798888789992188028888650888999876347768966658988789999999999849962
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 a~~~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd~~d~~~~~~~i~~~Tklv~~Esp~NP 160 (397)
T d1y4ia1 81 GLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAGKPEEIRAAMRPETKVVYIETPANP 160 (397)
T ss_dssp EEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTSHHHHHHHCCTTEEEEEEESSCTT
T ss_pred CEEEHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHCCCCCCCEEEECCCCCCHHHHHHHCCCCCCEEEECCCCCC
T ss_conf 11106778888887763168998654301012331035431367785575414899989999865877738980487522
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~l~v~Di~~i~~iA~~~gi~~vvDnT~atP~~~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~ 240 (397)
T d1y4ia1 161 TLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDI 240 (397)
T ss_dssp TCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHT
T ss_pred CEEECCCHHHHHHHHCCCCEEEECCCCCCCCCCCCHHCCCCEEEEEHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 11003307899886047852870275227154763202897899851351078741465215787889999999999967
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~G~~l~p~~a~l~~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~~~~ 320 (397)
T d1y4ia1 241 TGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGL 320 (397)
T ss_dssp TCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEETTHH
T ss_pred CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCH
T ss_conf 49858989999997471769999999999999999999748996767488878996522223446778759999956999
Q ss_pred ----------------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------------9
Q 000711 482 ----------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~f~~~L~l~~~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~liRlsvGlEd~~DLi~Dl~~AL~~a~~ 397 (397)
T d1y4ia1 321 EAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKATF 397 (397)
T ss_dssp HHHHHHHHTCSSSEECSCCSCSSCEEECTTTTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCCCCEEECCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHC
T ss_conf 99999997289362305637432032276312654589999997598929799976119999999999999987219
|
| >d1q1la_ d.258.1.1 (A:) Chorismate synthase, AroC {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Chorismate synthase, AroC superfamily: Chorismate synthase, AroC family: Chorismate synthase, AroC domain: Chorismate synthase, AroC species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=0 Score=29941.00 Aligned_cols=1 Identities=0% Similarity=-0.792 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
.
T Consensus 1 ~~~~~r~ttfGESHG~aig~vIdG~PaG~~id~~~i~~~L~RRrpG~~~~~t~R~E~D~veilSGv~~g~TtG~PI~~~I 80 (397)
T d1q1la_ 1 SLRYLRFLTAGESHGKGLTAILEGIPANLPLSEEEINHELRRRQRGYGRGGRMKIEKDTAEILSGVRFGKTLGSPIALFI 80 (397)
T ss_dssp CCSSCEEEEECCTTSSEEEEEEECCCBTCBCCHHHHHHHHHHHHTTCC------CCSCCEEEEESEETTEECSSCEEEEE
T ss_pred CCCEEEEECCCCCCCCEEEEEEECCCCCCEECHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECEECCEECCCCEEEEE
T ss_conf 96569996034578984489980508488848999999985689899999866799984799145158980678559999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~N~D~~~~~y~~~~~~~~~~~~~~~~~pRPGHAD~~~~~KYg~~d~r~gggRsSaReTa~rVaAGaIAk~~L~~~gI~v~ 160 (397)
T d1q1la_ 81 RNRDWENWKEKMAIEGEPSPSVVPFTRPRPGHADLSGGIKYNQRDLRNILERASARETAARVAVGAVCKKFLSEFGIKIG 160 (397)
T ss_dssp ECSCC-------------------------------CTTTTTCSSTHHHHHHHSGGGHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred ECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEE
T ss_conf 87876654543322356205554440488887536778874576666766514788999999999999999998498788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 s~v~~IG~i~~~~~~d~~~~~~~~~~~~~~~~~~~s~vrc~d~~~~~~m~~~I~~~r~~gDSvGG~ve~~~~gvP~GLGe 240 (397)
T d1q1la_ 161 SFVVSIGQKEVEELKDKSYFANPEKLLSYHEKAEDSELRIPFPEKDEEFKTYIDEVKEKGESLGGVFEVFALNVPPGLGS 240 (397)
T ss_dssp EEEEEETTEECGGGSSGGGGGCHHHHHHHHHHHTTSTTCCSCGGGHHHHHHHHHHHHTTTCCBCEEEEEEEESCCTTCSC
T ss_pred EEEEEECCEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCC
T ss_conf 89999866752434555445780233556887650750357656999999999999856886440699999658887667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 pv~~ddkLda~LA~AlmSIpAvKgvEfG~Gf~~a~~~GSe~nD~~~~~~~~~~~~~tN~aGGilGGISnG~pI~~rva~K 320 (397)
T d1q1la_ 241 HIQWDRRIDGRIAQAMMSIQAIKGVEIGLGFEAARRFGSQVHDEIGWSEGKGYFRHSNNLGGTEGGITNGMPIVVRVAMK 320 (397)
T ss_dssp SSSGGGCHHHHHHHHHHTSTTEEEEEETTGGGGGGSBGGGTCCCEEEETTTEEEESCCTTTTEETTEECSSCEEEEEEEC
T ss_pred CCCCCCCCHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEC
T ss_conf 73444442489999875040144301265166776630235565313478873355667764245765886089999978
Q ss_pred ----------------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------------9
Q 000711 482 ----------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------------------------------------------s 482 (1338)
=
T Consensus 321 P~sSI~~~q~Tvd~~~~e~~~~~~gRhDpcivpra~~VvEAm~alvlaD~~L~k~g~d~~~~~~~~~~~y~~~~~~~ 397 (397)
T d1q1la_ 321 PIPTLKNPLRSVDIETKEEMKAGKERTDIVAVPAASVVGEAMLAIVLADALLEKLGGDFMEEVKKRFEDYVNHVKSF 397 (397)
T ss_dssp CCCC------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHCCSBHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 86446775636237898777502799898578763389999999999999999857984999999999999997529
|
| >d1vkoa1 c.2.1.3 (A:11-314,A:429-521) Myo-inositol 1-phosphate synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Myo-inositol 1-phosphate synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=0 Score=29939.82 Aligned_cols=1 Identities=0% Similarity=-0.327 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~v~s~~v~y~~~~i~~~y~y~~t~v~~~~~~~~v~p~~~~~~f~t~~~vpklGVmLVG~GGnngTT~~aGv~Anr~g 80 (397)
T d1vkoa1 1 KRLIVESPNVKLEDGVLESRFTYRKNHFEHRADGLHVTPKEHDYSFKTVLKPRKTGLLLVGLGGNNGSTAVGSIFANQYA 80 (397)
T ss_dssp CCCCCCCTTEEEETTEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEECSCCCEEEEEETTTSHHHHHHHHHHHHHHTT
T ss_pred CCEEEECCCEEECCCEEEEEEEECCEEEEEECCCEEEEEEEEEEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 94488399738737558999886104999817935998767778998416688258998438840888999999998758
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 L~w~tk~G~~~an~~GSltq~stirlG~~~~~~~~~~~P~kd~lPl~~p~DiVfGGWDI~~~nL~eAa~rA~VLd~~ll~ 160 (397)
T d1vkoa1 81 MTWRTKEGHSQANYFGSVTQTATVHLGYDSATQNQIFVPFKDIVPILSPNDLIISGWDISDSNLYEAMGRAKVFEPELQE 160 (397)
T ss_dssp CEEEETTEEEECCCTTCHHHHCEEEEEEETTTTEEEEEEGGGTSCCCCGGGEEEEEECSSCCCTTHHHHHHTCSCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHCEEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHCCCCCHHHHH
T ss_conf 97546677405886351443033575135789873356376517889821168944469999889999875999989999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~l~~~L~~i~P~psv~~pdfia~nq~~ra~nv~~g~~k~e~ve~Ir~DIr~Fk~~~~ldrVVVlwtAsTEr~~~~~~~v~ 240 (397)
T d1vkoa1 161 KLRPFMEPIVPLPSIYYPDFIASNQGDRANNVIPGDNKLEHLEHIRADIRKFKQEHELECVIVLWTANTERYTDVRQGLN 240 (397)
T ss_dssp HHHHHHTTCCCBCBCCCGGGSCGGGGGGCCSBCCSSCHHHHHHHHHHHHHHHHHHHTCSEEEEEECSCCCCCCCCCTTTT
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCC
T ss_conf 99999860865542107277775135200151358889999999999999999974997699998158777777761200
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~t~e~l~~ai~~n~~eIsPS~lYA~AAi~eG~pyiNgsPq~t~vPal~eLA~~~~v~iaG~DfKTLLaspliLDl~ll~e 320 (397)
T d1vkoa1 241 ATADEIMESIRVNEDEVSPSNIFAVASILEGAHYINGSPQNTLVPGLIELAERHKVFVGGDDFKSLLASPLIYDLAILTE 320 (397)
T ss_dssp SSHHHHHHHHHTTCSSCCHHHHHHHHHHHTTCEEEECSSSCCCCHHHHHHHHHHTCCEECSCBCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHH
T ss_conf 16999999986699878859999999997599623699755666459999986199665257898755188886999996
Q ss_pred ----------------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------------9
Q 000711 482 ----------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 l~~Ri~~k~~~~~~~~~~Vls~LS~~~KaPl~~~g~~~vn~l~kQr~~l~N~lR~~~Gl~p~~~m~lEy~~~lp~~k 397 (397)
T d1vkoa1 321 LASRVSYKVDDEYKPFHSVLSILSLLLKAPVVPPGTPISNAFMRQFSTLTKLVTALAGFPSDTDMQIEFFTQLPAAK 397 (397)
T ss_dssp HHTTEEEESSSSEECCCSBCGGGGGGBSSCCCSTTSCCCCCHHHHHHHHHHHHHHHHTCCCCTTSCGGGTSCCCCCC
T ss_pred HHHEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCC
T ss_conf 64178862254004752077776665268888999866028899999999999998299977754303310055579
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29935.93 Aligned_cols=1 Identities=0% Similarity=-1.622 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~~dpi~~~~~~~~~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~aia 80 (397)
T d3tata_ 1 MFQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIA 80 (397)
T ss_dssp CCCCCCCCCCCTTTTHHHHHHHSCCSSCEECSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 96557778999488999997268998948850787738889988868999999999717666787898555899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~~~~~ 160 (397)
T d3tata_ 81 PLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRF 160 (397)
T ss_dssp HHHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHHHHHTTTCCCEECCCCCTTTSSCCH
T ss_pred HHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHCCCEEEEEECCHHHCCCCCH
T ss_conf 99852259767767689845760377888988776533799833662667666279999869979997465142256420
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i 240 (397)
T d3tata_ 161 NDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPAL 240 (397)
T ss_dssp HHHHHHHTTCCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCE
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCEECCHHHHHHHHHHHHHCCEEEEEEHHHHHHCCCCCCCCHHHHHHHHCCCCEE
T ss_conf 77899864066552899826899997841788999999999853694699415531001697533114554442277359
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (397)
T d3tata_ 241 VSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRIL 320 (397)
T ss_dssp ECBCCHHHHTBTTTCCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 98447665333576512110011678999988888887752256666078999999860788889999988889999999
Q ss_pred ----------------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------------9
Q 000711 482 ----------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls~e~~~~L~~e~~V~l~~g~Ri~~a~~~~~~i~~~~~ai~~v~ 397 (397)
T d3tata_ 321 AMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSAAQVDRLREEFGVYLIASGRMCVAGLNTANVQRVAKAFAAVM 397 (397)
T ss_dssp HHHHHHHHTTTTTCTTSCTTHHHHCCSSBCCCCCCHHHHHHHTTTTCEECCSSSCCBTTSCCTTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCCHHHHHHHHHHCCEEECCCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 99999999999848998648876898417841919999999999599995798879852599889999999999869
|
| >d1lf6a1 a.102.1.5 (A:288-684) Bacterial glucoamylase, C-terminal domain {Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Bacterial glucoamylase C-terminal domain-like domain: Bacterial glucoamylase, C-terminal domain species: Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]
Probab=100.00 E-value=0 Score=29933.56 Aligned_cols=1 Identities=0% Similarity=0.504 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~~s~~~lk~~~~~~~~GaiiAsptt~~~e~~~~~~~~~Y~y~W~RDaa~~~~al~~~G~~~~a~~~l~~ 80 (397)
T d1lf6a1 1 NNFNGKANSLYYNSMMILKASEDKTNKGAYIASLSIPWGDGQRDDNTGGYHLVWSRDLYHVANAFIAAGDVDSANRSLDY 80 (397)
T ss_dssp CCTTTTCCHHHHHHHHHHHTTBCSSSTTCBCSCSSCTTGGGSBSBSCCGGGSBCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99873799999999999998047789964897677886655689889997057272599999999985997999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 l~~~~~~~G~~~~~~~~~G~~~~~~~q~D~~g~~i~a~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~lWEe~~g~~~~t 160 (397)
T d1lf6a1 81 LAKVVKDNGMIPQNTWISGKPYWTGIQLDEQADPIILSYRLKRYDLYDSLVKPLADFIIKIGPKTGQERWEEIGGYSPAT 160 (397)
T ss_dssp HHHHHHHHSSCCSCBCTTSCBCCCCCCHHHHHHHHHHHHHTTCGGGTTTTHHHHHHHHHHHCSSBSSCTTSSCCBBCHHH
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH
T ss_conf 99995325877887886798645677776699999999999753406899999999999838887655454457864203
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~aL~~~a~la~~~g~~~~a~~~~~~A~~i~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 240 (397)
T d1lf6a1 161 MAAEVAGLTCAAYIAEQNKDYESAQKYQEKADNWQKLIDNLTYTENGPLGNGQYYIRIAGLSDPDADFMINIANGGGVYD 240 (397)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHEESSCSSTTSCEECSCBSSSCTTSCCEEEETTTTEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 67799999999999886088157999999999999999983428356610243200146666753110001245434456
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~lDasll~~~~~g~~~~~d~~~~~tl~~i~~~l~~~~g~~~~~~RY~~D~y~~~~~~~~~~~~~~g~pW~i~T~~~a 320 (397)
T d1lf6a1 241 QKEIVDPSFLELVRLGVKSADDPKILNTLKVVDSTIKVDTPKGPSWYRYNHDGYGEPSKTELYHGAGKGRLWPLLTGERG 320 (397)
T ss_dssp GGGCCCGGGGHHHHTTSSCTTCHHHHHHHHHHHHHSEEEETTEEEECSSTTCCCSCSBTTBCCSSSSCCCBBHHHHHHHH
T ss_pred CCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 67776778763110378788878999999999987166777666654454555343577677667868754999999999
Q ss_pred ----------------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------------9
Q 000711 482 ----------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------------------------------------------s 482 (1338)
+
T Consensus 321 ~~~~~~g~~A~~~l~~~~~~~~~~G~l~E~~d~~tG~~~g~a~plaWS~A~~i~~~~~l~~~~~~~~~~~~~~~~~~ 397 (397)
T d1lf6a1 321 MYEIAAGKDATPYVKAMEKFANEGGIISEQVWEDTGLPTDSASPLNWAHAEYVILFASNIEHKVLDMPDIVYKRYVA 397 (397)
T ss_dssp HHHHHTTCCCHHHHHHHHHHSCTTSCCCSCBCTTTCCBCSSCSSCHHHHHHHHHHHHHHHHTSCTTSCHHHHHHHTC
T ss_pred HHHHHCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCC
T ss_conf 99997117999999999976688886350046989984899954788999999999998649976666788887309
|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=29933.56 Aligned_cols=1 Identities=0% Similarity=-1.025 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~p~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~ 80 (397)
T d1vjva_ 1 QFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLPV 80 (397)
T ss_dssp CCCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECCH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 98789988888884079999999998089999999817741011346654322589999999999999985898714879
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (397)
T d1vjva_ 81 VLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGDKFSEDFRIQFKTTIKDTANDNDITVKENESDSKLQ 160 (397)
T ss_dssp HHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTHHHHTTTCEEEEEEEEETTEEEEEEEECCCEESCEE
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCEEEEEEEECCCCCCCCEECCEEEEEEE
T ss_conf 99999999704322465566634126689999999999987733213554155120058862336644213540211233
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~l~i~l~R~~~~~~~~~~~k~~~~~~~~~~ld~~ 240 (397)
T d1vjva_ 161 CHISGTTNFMRNGLLEGLNEKIEKRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVA 240 (397)
T ss_dssp ECCCTTCCBHHHHHHHHHEEC---------CCCCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBCCSEEECG
T ss_pred EEECCCEEECHHHHHHHHHHHHCCCCCCCCCCCEEEEECEEECCCCEEEEEEEEEEECCCCCCCCCCCCEEECCCEEECC
T ss_conf 46326412202778764366540534555787523220423238952377766654214556110327625267077525
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (397)
T d1vjva_ 241 DMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLEK 320 (397)
T ss_dssp GGBCHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHCCCHHCCCCHHCCCHHHHCCCCCCCCCCC
T ss_conf 32110233320015676644331111477777640468766532234200011000023100110001000135632123
Q ss_pred ----------------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------------9
Q 000711 482 ----------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~~Y~L~aVv~H~G~~~~~GHY~ay~r~~~~~~~W~~~nD~~V~~v~~~~V~~~~~~~~~~~aYlLfY~r~~~ 397 (397)
T d1vjva_ 321 GENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSALILMYKGFGL 397 (397)
T ss_dssp TBCSSSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGCCTTSCEEEEEEEEETTC
T ss_pred CCCCCCCEEEEEEEEEECCCCCCCCEEEEEECCCCCCEEEEEECCCCEECCHHHHHHHHCCCCCCEEEEEEEEECCC
T ss_conf 67899888999999996599999682899989999898999989877799889998750899888189999996489
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=100.00 E-value=0 Score=29861.71 Aligned_cols=1 Identities=0% Similarity=-1.059 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~l~~l~~~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~FsSndYLGL~~~p~v~~a~~~al~~yG~gs~ 80 (396)
T d2bwna1 1 DYNLALDKAIQKLHDEGRYRTFIDIEREKGAFPKAQWNRPDGGKQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSG 80 (396)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCCCEEEECTTSTTEEEEECTTSCEEEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCC
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 96799999999999859986342012246788740474027998289998852102768999999999999999589864
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~Sr~~~G~~~~h~~LE~~lA~~~g~e~all~~sG~~An~~~i~~l~~~~~~d~i~~D~~~Hasi~~g~~ls~a~~~~f~H 160 (396)
T d2bwna1 81 GTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRH 160 (396)
T ss_dssp SBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCCEEEHHHHHHCCCHHHHCCCCCCEEEEC
T ss_conf 55244587449999999999974998515540113778889998760367984310534223000143046667337632
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 nd~~~l~~l~~~~~~~~~~~iv~egvySmdGd~apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di 240 (396)
T d2bwna1 161 NDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDI 240 (396)
T ss_dssp TCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSE
T ss_pred CHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCEEEECCCEEEEEECCCCCCCHHHCCCCEEEEE
T ss_conf 36877666776405667616999752367644466176899865424066501210110221666662233187312124
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~gTlsKa~g~~Gg~v~~~~~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~ 320 (396)
T d2bwna1 241 FNGTLAKAYGVFGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL 320 (396)
T ss_dssp EEEESSSTTCSCCEEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 53124655533554353268999998751213453136757778899999997631207899999999999999889866
Q ss_pred ---------------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------------9
Q 000711 482 ---------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------------------------------------------s 482 (1338)
=
T Consensus 321 g~~~~~~~spIvpv~ig~~~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~lsa~ht~edId~l~~~L~~iw 396 (396)
T d2bwna1 321 GMPIIDHGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLW 396 (396)
T ss_dssp TCCBCCCSSSCEEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 9986899999799996999999999999999689899987899689997269998576699999999999999859
|
| >d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme, central domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 1,4-alpha-glucan branching enzyme, central domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29857.72 Aligned_cols=1 Identities=0% Similarity=-0.925 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~iYe~~~~~f~~~~~~~~~g~~~gi~~klidyl~~LGv~~iwl~Pi~~~~~~~~hGY~~~d~~ 80 (396)
T d1m7xa3 1 VVQTEERKKANQFDAPISIYEVHLGSWRRHTDNNFWLSYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGLY 80 (396)
T ss_dssp CCCCHHHHHHHSTTSCCEEEEECTTSSCBCTTTCCBCCHHHHHHHHHHHHHHTTCSEEEESCCEECSCGGGTTSSCSEEE
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 96641024578889986799772571477899998879999999899999982998899698887899899896867587
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~vdp~~Gt~~d~~~LV~~aH~~gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (396)
T d1m7xa3 81 APTRRFGTRDDFRYFIDAAHAAGLNVILDWVPGHFPTDDFALAEFDGTNLYEHSDPREGYHQDWNTLIYNYGRREVSNFL 160 (396)
T ss_dssp EECGGGSCHHHHHHHHHHHHHTTCEEEEEECTTSCCCSTTSSTTGGGSCSSBCC-----------CCCBCTTSHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 71824289899999999985420333201143446786555554567863235678778778877754467772358999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~gvDG~R~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 240 (396)
T d1m7xa3 161 VGNALYWIERFGIDALRVDAVASMIYRDYSRKEGEWIPNEFGGRENLEAIEFLRNTNRILGEQVSGAVTMAEESTDFPGV 240 (396)
T ss_dssp HHHHHHHHHHSCCCEEEECCSHHHHCC--------------CTTCCHHHHHHHHHHHHHHHHSSTTCEEEECCSSCCTTT
T ss_pred HHHHHHHHHHHCCCCEEEECHHHHCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf 99999889985786323311423122010011111111103566550289999999999863479946997521787532
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (396)
T d1m7xa3 241 SRPQDMGGLGFWYKWNLGWMHDTLDYMKLDPVYRQYHHDKLTFGILYNYTENFVLPLSHDEVVHGKKSILDRMPGDAWQK 320 (396)
T ss_dssp TBCTTTTBSCCSEEECHHHHHHHHHHHHSCGGGGGGCTHHHHGGGTTTTTSCEEEEECGGGSSTTSCCHHHHSCSSHHHH
T ss_pred CCCCCCCCCCHHHHHCCCHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 22000354320334211022344430000013444422223100111055521222344322457774223688877899
Q ss_pred ---------------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------------9
Q 000711 482 ---------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~la~a~llt~pG~P~IYyGdEiG~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~~L~~lR~~~paL~~~~~~ 396 (396)
T d1m7xa3 321 FANLRAYYGWMWAFPGKKLLFMGNEFAQGREWNHDASLDWHLLEGGDNWHHGVQRLVRDLNLTYRHHKAMHELDFD 396 (396)
T ss_dssp HHHHHHHHHHHHHSSSEEEEETTTTTTCSSCCCTTSCCCGGGGCSSCCHHHHHHHHHHHHHHHHTTCGGGTSCTTS
T ss_pred HHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCC
T ss_conf 9999999999998178547056512487899998887782111476534279999999999999739876460789
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29858.49 Aligned_cols=1 Identities=0% Similarity=-1.856 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~f~~~~~~p~d~i~~~~~~~~~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lR~aia~ 80 (396)
T d2q7wa1 1 MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQE 80 (396)
T ss_dssp -CTTCCCCCC-----------------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 96445547998599999998466899968830787658889989988999999999618988988997677999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~ 160 (396)
T d2q7wa1 81 LLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFD 160 (396)
T ss_dssp HHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHH
T ss_pred HHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHCCCEEEECCCCCCCCCCCCCC
T ss_conf 99861698666442013213417899999999886315650899816888430599998599067245434456542210
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~ 240 (396)
T d2q7wa1 161 ALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIV 240 (396)
T ss_dssp HHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEE
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCEECCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCC
T ss_conf 57778988515838999568849949336889987788877048819998615354346986674286654562344211
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (396)
T d2q7wa1 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQR 320 (396)
T ss_dssp EEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 33564434445777442446606899999865556665504445787899999999853913678999999999999999
Q ss_pred ---------------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------------9
Q 000711 482 ---------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~l~~e~~~~L~~e~gV~~~~g~Ri~~a~l~~~~i~~~~~ai~~v~ 396 (396)
T d2q7wa1 321 MRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396 (396)
T ss_dssp HHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCHHHHHHHHHHCCEEECCCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 9999999999828988741564897179951879999999999689997799879952898788999999999869
|
| >d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Phase 1 flagellin superfamily: Phase 1 flagellin family: Phase 1 flagellin domain: Phase 1 flagellin species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=29792.63 Aligned_cols=1 Identities=0% Similarity=0.072 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~i~gl~qa~~N~~d~~s~lqtae~al~~~~~iL~r~reLavqaan~t~~~~dr~ai~~E~~~l~~ei~~ia~~T~fng~~ 80 (395)
T d1io1a_ 1 NIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQFNGVK 80 (395)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEECCCC
T ss_conf 97138899998999999999999999999999999999999850578999999999999999999999999737028802
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 Ll~Gs~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (395)
T d1io1a_ 81 VLAQDNTLTIQVGANDGETIDIDLKQINSQTLGLDTLNVQQKYKVSDTAATVTGYADTTIALDNSTFKASATGLGGTDQK 160 (395)
T ss_dssp TTTSCEEEEEECSSSTTCEEEEEECCCSTTTTTCTTCCCCCCCEEEEEECCCCSEEEEEEECBGGGSTTTCGGGCSSEEE
T ss_pred CCCCCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 23556725897247875058997123310001121100222322333211122222211013443222112232232100
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (395)
T d1io1a_ 161 IDGDLKFDDTTGKYYAKVTVTGGTGKDGYYEVSVDKTNGEVTLAGGATSPLTGGLPATATEDVKNVQVANADLTEAKAAL 240 (395)
T ss_dssp ECSSEEEETTTTEEEEEEEEETCSSCCEEEEEEECTTTCBEEESTTCCSCCTTSSCTTCCEEESEEEEEGGGCHHHHHHH
T ss_pred CCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 01221111101110000011222221000110000133210011222111223444333210001000000120011100
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (395)
T d1io1a_ 241 TAAGVTGTASVVKMSYTDNNGKTIDGGLAVKVGDDYYSATQNKDGSISINTTKYTADDGTSKTALNKLGGADGKTEVVSI 320 (395)
T ss_dssp HHTTCCSCEEEEEEEEECTTSCEEEEEEEEEETTEEEEEEECTTSCEEECBCCBBCSSSSCBCCBEEEESTTSCEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCEEEEEC
T ss_conf 00012233222221113421100145532112221001101222332123322222200233102222234341035412
Q ss_pred --------------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------------9
Q 000711 482 --------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~i~v~t~~~A~~Al~~iD~Ai~~v~~~Ra~lGA~qNRle~ti~NL~~~~~N~~aar 395 (395)
T d1io1a_ 321 GGKTYAASKAEGHNFKAQPDLAEAAATTTENPLQKIDAALAQVDTLRSDLAAVQNRFNSAITNLGNTVNNLTSAR 395 (395)
T ss_dssp TTEEEEHHHHTTCBTTTSCCCCCCCCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 551021123455332222102466488899999999999999999998755698868999998999999998519
|
| >d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=29787.41 Aligned_cols=1 Identities=0% Similarity=-0.327 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~ld~~g~~~~~~~~~~ls~e~l~~~Yr~M~~~R~~e~~~~~l~~~G~i~~ 80 (395)
T d2bfda1 1 KPQFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISF 80 (395)
T ss_dssp CCCCTTCCCCCCSSCCCCCCCCSSCSCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99899987756655455787667888806778999999884236998999999999999999999999999996897012
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~GqEA~~vg~~~al~~~D~~~~~yR~h~~~la~G~~~~~~~ael~g~~~g~~~Grggs~H~~~~~~~~~~~~~ivg 160 (395)
T d2bfda1 81 YMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLA 160 (395)
T ss_dssp CCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSSTT
T ss_pred CCCCCCHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 50898869999999997697780134445367244431789999998740035764456654443323346311344334
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvlfv~eNN~yaist~~~~~~~~~~i~~ra~~ 240 (395)
T d2bfda1 161 TQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPG 240 (395)
T ss_dssp THHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTGG
T ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHCCHHHHHHHHC
T ss_conf 55107888888765037654443114788754113889999986237743799986133422200210011168876310
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~gi~~~~vDG~Dv~aV~~a~~~A~~~~R~g~gP~lIE~~TyR~~~Hs~~DD~~~YR~~~Ei~~w~k~DdPi~~~~~~Li~ 320 (395)
T d2bfda1 241 YGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLS 320 (395)
T ss_dssp GTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCC--CC-------------------CCHHHHHHHHHTT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 35541688337389888888876433312687537887663588887767732466889999988549899999999998
Q ss_pred --------------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------------9
Q 000711 482 --------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~g~~s~ee~~~i~~e~~~eV~~A~~~A~~~p~P~~~~l~~~VYae~p~~l~eq~~~~~~~~~~~~e~~~~~~~~~ 395 (395)
T d2bfda1 321 QGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLDHFDK 395 (395)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHHHHHSCBCCGGGGSTTSSSSCCHHHHHHHHHHHHHHHHHGGGSCGGGBCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCC
T ss_conf 799999999999999999999999999858997989998450159997799999999999996725388455349
|
| >d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Choline kinase domain: Choline kinase species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=0 Score=29783.00 Aligned_cols=1 Identities=100% Similarity=2.563 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~~~~~~l~v~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllR 80 (395)
T d1nw1a_ 1 GMKELLSTMDLDTDANTIPELKERAHMLCARFLGGAWKTVPLEHLRISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLR 80 (395)
T ss_dssp CHHHHHTTCCTTCCGGGCHHHHHHHHHHHHHHHCTHHHHCCGGGEEEEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEE
T ss_pred CHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCEEEE
T ss_conf 94445045654566543615899999999986711026899301699991785334348999688775445789817999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 i~g~~~~~idr~~E~~i~~~ls~~gl~Pkll~~~~~g~I~efi~g~~l~~~d~~~~~~~~~iA~~La~lH~~~~~~~~~~ 160 (395)
T d1nw1a_ 81 VYFNPETESHLVAESVIFTLLSERHLGPKLYGIFSGGRLEEYIPSRPLSCHEISLAHMSTKIAKRVAKVHQLEVPIWKEP 160 (395)
T ss_dssp EECSCCCHHHHHHHHHHHHHHHHTTSSSCEEEEETTEEEECCCCEEECCTTGGGSHHHHHHHHHHHHHHTTCCCSSCCSS
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEECCCCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 65996116589999999999975799980899818956999734554883331465555999999999850332236675
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~l~~~~~~lv~CHnDL~~~NiL~~~~~~~~~ 240 (395)
T d1nw1a_ 161 DYLCEALQRWLKQLTGTVDAEHRFDLPEECGVSSVNCLDLARELEFLRAHISLSKSPVTFCHNDLQEGNILLPKASSGNI 240 (395)
T ss_dssp CHHHHHHHHHHHHHHHHSCTTCCEECCGGGSCCEECHHHHHHHHHHHHHHHTTCCCCEEEECSCCCGGGEEEEC------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEECCCCCCCC
T ss_conf 42888999999765431237776434555302444499999999999987430369846885578856376536433222
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lID~EYa~~n~~~fDian~f~E~~~~y~~~~~~~~~~~~~~~ps~e~~~~fi~ 320 (395)
T d1nw1a_ 241 RMPSLSDETQALGNSLSAFNPADPRLVLIDFEYASYNYRAFDFANHFIEWTIDYDIDEAPFYKIQTENFPENDQMLEFFL 320 (395)
T ss_dssp ------------------------CCEECCCTTCEEEEHHHHHHHHHHHTTEECCCSSTTSCEECGGGSCCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 34553100023444322356888827998542367885066599999997055677666532134234939999999999
Q ss_pred --------------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------------9
Q 000711 482 --------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------------------------------s 482 (1338)
+
T Consensus 321 ~Yl~~~~~~~~~~~~~~~~~l~~~v~~~~~~s~l~W~lW~~iq~~~~~~~fDy~~Y~~~Rl~~y~~~k~~l~~~~ 395 (395)
T d1nw1a_ 321 NYLREQGNTRENELYKKSEDLVQETLPFVPVSHFFWGVWGLLQVELSPVGFGFADYGRDRLSLYFKHKQLLKNLA 395 (395)
T ss_dssp HHHHHHTCSCGGGHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHCCSSSCHHHHHHHHHHHHHHTHHHHHTTC
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999873666510679999999999999998857899999999646448998999999999999999999887119
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=100.00 E-value=0 Score=29782.73 Aligned_cols=1 Identities=0% Similarity=-0.593 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~v~~~~d~~~~~~~~~~~ 80 (395)
T d2py6a1 1 DPLAMNDSFLAAADALAVDPMFGIPANVREVIARRGNATRLVILGTKGFGAHLMNVRHERPCEVIAAVDDFRYHSGELYY 80 (395)
T ss_dssp CGGGHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHGGGCEEEEECSSSTHHHHHSCSSSCSSEEEEEECTTTTTSCCEET
T ss_pred CCHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHCCCEEC
T ss_conf 94116778887788754472320868899999850897528997686458999999987794699996684232286533
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 g~pv~s~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (395)
T d2py6a1 81 GLPIISTDRFTELATHDRDLVALNTCRYDGPKRFFDQICRTHGIPHLNFEQAVRAFGLQGNVDYRVDDWGADIVRNIPAF 160 (395)
T ss_dssp TEEEECHHHHHHHHHTCTTEEEEECCCSHHHHHHHHHHHHHTTCCEEEHHHHHHHTTCTTSSCGGGSCCHHHHHHTHHHH
T ss_pred CEEEECHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 55751678864344226857999813641122589999876598400157778873774234402444589999869999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~L~D~~S~~~~~~~l~~rl~~d~~~~~~~~~~~~~~YF~~~i~~l~kn~vfIDVGAniG~~s~~f~~~~~~~~~k 240 (395)
T d2py6a1 161 QTLAQRLADDYSVQTLYAVLNFHLTCEPEYYHEVERPYSTLYFRSGLLRFSDSEKMVDCGASIGESLAGLIGVTKGKFER 240 (395)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHHHHCCTHHHHHHCCCGGGTTTSSSSCCCCSSCEEEEETCTTSHHHHHHHHHHTSCCSE
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCE
T ss_conf 99998713776599999999998639989985135758776543404676799899997758778899999966899998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 V~aFEP~p~n~~~LkkNi~~n~~~n~~~~I~~~~~alsd~~~~~~f~~~~~~~s~~~~~~~~~~~~~~V~~~tLD~l~~~ 320 (395)
T d2py6a1 241 VWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGENTIRVPFNHEGGHGGFVKPADADHEPADLIDVRPIDDIIDD 320 (395)
T ss_dssp EEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECSSCEEEEC--------------------CEEEEECHHHHCSS
T ss_pred EEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEHHHHCCC
T ss_conf 99993987999999999985622255543999998961661389985179865310135667775189998788995378
Q ss_pred --------------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------------9
Q 000711 482 --------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------------------------------s 482 (1338)
=
T Consensus 321 ~id~IKIDVEG~E~~VLkGa~~~Lk~~kPiI~IEiyh~~~d~~~i~~~L~~l~~~Y~~~lR~h~~~~~d~vlY~~ 395 (395)
T d2py6a1 321 APTFIKMDIEGSELSALKGARRAISEHKPKLAISAYHRSTDLLDLTNYILSIRPDYQIGLRHHTPDRWDTCLYFY 395 (395)
T ss_dssp CCSEEEECCSSCHHHHHHTTHHHHHHHCCEEEEECCSSTTHHHHHHHHHHHHCTTCCEEEEECSSSSCCEEEEEC
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEC
T ss_conf 998899968998799999789999867987999995257659999999998636974999668987501489859
|
| >d1aora1 a.110.1.1 (A:211-605) Aldehyde ferredoxin oxidoreductase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Aldehyde ferredoxin oxidoreductase, C-terminal domains superfamily: Aldehyde ferredoxin oxidoreductase, C-terminal domains family: Aldehyde ferredoxin oxidoreductase, C-terminal domains domain: Aldehyde ferredoxin oxidoreductase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=0 Score=29781.78 Aligned_cols=1 Identities=0% Similarity=-2.122 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 vad~~~f~~~~~~~~~~~~~~p~~~~~l~~~GT~~~~~~~~~~g~lP~~Nf~~g~~~~a~~isge~~~~~~~~r~~~C~~ 80 (395)
T d1aora1 1 IADKQKFMLVVREKVNKLRNDPVAGGGLPKYGTAVLVNIINENGLYPVKNFQTGVYPYAYEQSGEAMAAKYLVRNKPCYA 80 (395)
T ss_dssp CSSHHHHHHHHHHHHHHHHHSHHHHTHHHHHCGGGHHHHHHHTTCCCBTTTTBSCCTTGGGGSHHHHHHHTEEEEECCTT
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCHHCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCHHHHHHHHCCCCCCCCC
T ss_conf 98989999999999999982970415321109299999998769877488888889971542899999986146999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 Cpi~C~~~~~~~~~~~~~gpEYEt~~a~Gs~~Gi~d~~~v~~~n~l~d~~GlDtIs~G~~ia~amE~~e~Gll~~e~~gd 160 (395)
T d1aora1 81 CPIGCGRVNRLPTVGETEGPEYESVWALGANLGINDLASIIEANHMCDELGLDTISTGGTLATAMELYEKGHIKDEELGD 160 (395)
T ss_dssp CSSCCEEEEEETTTEEEECCCHHHHHHHTGGGTCCCHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHTTSSCHHHHTT
T ss_pred CCCCCCCEEEECCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHCCC
T ss_conf 98674834770688753687730110300124899999999999999996813887868999999999779887242066
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~l~wGd~e~~~~li~~IA~r~g~G~~LA~G~~~aae~~G~~~~a~~vkg~e~p~~dpr~~~g~~l~yat~~~G~~H~~ 240 (395)
T d1aora1 161 APPFRWGNTEVLHYYIEKIAKREGFGDKLAEGSYRLAESYGHPELSMTVKKLELPAYDPRGAEGHGLGYATNNRGGCHIK 240 (395)
T ss_dssp SCCCCTTCTHHHHHHHHHHHTTCTTHHHHTTCHHHHHHHTTCGGGCCEETTEECCSCCGGGCHHHHHHHHHCTTSSCSGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCHHHEEECCCCCCHHHH
T ss_conf 77879999999999999998467417888223999999959823546744777443377653132311001577640233
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~e~~g~~~~~dp~~~~e~k~~~~~~~q~~~~~~dslg~C~F~~~~~~~~~~~~~~~avTG~~~t~e~l~~~geRi 320 (395)
T d1aora1 241 NYMISPEILGYPYKMDPHDVSDDKIKMLILFQDLTALIDSAGLCLFTTFGLGADDYRDLLNAALGWDFTTEDYLKIGERI 320 (395)
T ss_dssp GCTHHHHTTCSSSCCCTTCCSHHHHHHHHHHHHHHHHHHHHTCCGGGGTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 22244754389765785514379999999999999996013434413667999999999997538899999999999999
Q ss_pred --------------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------------9
Q 000711 482 --------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~l~R~fN~r~G~~~~~dD~lP~r~~~ep~~~G~~kg~~~~~e~~l~~YY~~rGWd~~G~Pt~e~L~~LgL~d~~ 395 (395)
T d1aora1 321 WNAERLFNLKAGLDPARDDTLPKRFLEEPMPEGPNKGHTVRLKEMLPRYYKLRGWTEDGKIPKEKLEELGIAEFY 395 (395)
T ss_dssp HHHHHHHHHHHTCCHHHHSCCCHHHHHSCCCSSTTTTCCCCHHHHHHHHHHHHTCCTTSCCCHHHHHHHTCGGGC
T ss_pred HHHHHHHHHHCCCCHHHHCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCC
T ss_conf 999999999747983654569887724888878777876789999999999839898898799999976891339
|
| >d1w36b2 c.37.1.19 (B:486-880) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29782.04 Aligned_cols=1 Identities=0% Similarity=-0.161 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
.
T Consensus 1 ~~~~~~~g~~~p~~~~w~~~~~~~~~~~~~~~~A~~~A~~I~~ll~~~~~~~~~~~~~~~~r~v~~~DIAILvR~~~~~~ 80 (395)
T d1w36b2 1 ALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAA 80 (395)
T ss_dssp TEEEEETTEEECSEEEEECCSSCCCTTHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTEEEECCGGGEEEEESSHHHHH
T ss_pred CCEEEECCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCEEEEEECCHHHH
T ss_conf 95367889768700210389876551309999999999999999971203653004677767788143899983766699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~i~~aL~~~gIP~v~~~~~~~l~~~~ev~~llalL~~l~~p~d~~~l~~~L~sp~~gl~~~~l~~~~~~~~~~~~~~~~~ 160 (395)
T d1w36b2 81 QVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEF 160 (395)
T ss_dssp HHHHHHHTTTCCEEETTCCCBGGGSSHHHHHHHHHHHHTCTTSHHHHHHHHHSGGGTCCHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99999998599859935875432569999999999977455647889998708556999999998751267799999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~e~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 240 (395)
T d1w36b2 161 DGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQ 240 (395)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHTTHHHHHHHSSSHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHSCCCCSTTB
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 99999998634258999999875499999863671799999998999999998745778899999999986143231233
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~daV~ImTIHkSKGLEfpvVflp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Ee~RLlYVA 320 (395)
T d1w36b2 241 QMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVA 320 (395)
T ss_dssp CCCCTTGGGSEEEEETTTTSSCCEEEEEETTTTCCCCCCSCEEECTTTCCEEEESSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCCCEEEEECHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 10110256508997114530677778997167668886556666555532225766465578898899999997454645
Q ss_pred --------------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------------9
Q 000711 482 --------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------------------------------s 482 (1338)
.
T Consensus 321 lTRAk~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pw~~ 395 (395)
T d1w36b2 321 LTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQV 395 (395)
T ss_dssp HTTEEEEEEEEECCCCCSCSCCSSCCGGGGSHHHHHHTCSSCCCHHHHHHHHHHSCSTTEEEEECCCCCCCCCCC
T ss_pred HHHHHHHHEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 734726118997555666788788865778799999707888886779998987457876667789998999879
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=0 Score=29779.31 Aligned_cols=1 Identities=0% Similarity=0.072 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~s~r~~~~~~~ir~i~~~a~~l~~~G~~vi~l~~G~P~~~df~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia 80 (395)
T d1xi9a_ 1 SIRASKRALSVEYAIRDVVLPARELEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIV 80 (395)
T ss_dssp CCCCCHHHHTCCC-------CHHHHHHTTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHH
T ss_pred CCCCHHCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 96300040357478999999999999779970899899999789999799999999999638898899978999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~g~~~~~~~i~i~~G~~~~~~~~~~~~~~~Gd~vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~ 160 (395)
T d1xi9a_ 81 EREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIR 160 (395)
T ss_dssp HHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCHHHHHH
T ss_conf 86432045231212232322220132100121047999899838833331000320597799984332235431278899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~ 240 (395)
T d1xi9a_ 161 KKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYF 240 (395)
T ss_dssp HHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTC
T ss_pred HHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCHHHCCCCCCEEEEECCCHHCC
T ss_conf 76402650899669989754101179999998555425855774121000132222345032078888899958622142
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 320 (395)
T d1xi9a_ 241 ATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEIPGIST 320 (395)
T ss_dssp CGGGCCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTSTTEEC
T ss_pred CCHHHCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 54010076685187999999999988864378784799999999986087999999999999999999999986799411
Q ss_pred --------------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------------9
Q 000711 482 --------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~p~gg~~~~~~l~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~~~~~e~l~eal~rl~~~l~er 395 (395)
T d1xi9a_ 321 TKPQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEKFMKER 395 (395)
T ss_dssp CCCCBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCC
T ss_conf 589855898178888899999999999999699999847332889979799996489999999999999999549
|
| >d1n40a_ a.104.1.1 (A:) Cyp121 monooxygenase (P450 Mt2) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cyp121 monooxygenase (P450 Mt2) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=0 Score=29776.85 Aligned_cols=1 Identities=0% Similarity=-1.458 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~p~~~~~~~~~~~~~~LR~~~Pv~~~~~~~g~~~wvvt~~~dv~~vl~d~~~~~~~~~~~~~~~~~~~~~~~~ 80 (395)
T d1n40a_ 1 TATVLLEVPFSARGDRIPDAVAELRTREPIRKVRTITGAEAWLVSSYALCTQVLEDRRFSMKETAAAGAPRLNALTVPPE 80 (395)
T ss_dssp -CCCCCBSCCCCCSSSCCHHHHHHHHHCSEEEEECTTSCEEEEECSHHHHHHHHTCTTEESGGGGSTTCCCSSCCSSCGG
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 99877789988777677399999995299789874899769997799999999769774768776677654444447817
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~d~~~H~~~R~~~~~~Fsp~~~~~~~~i~~~~~~ll~~l~~~g~~~Dlv~~~a~~l~~~vi~~llG~p~~d~~~~~ 160 (395)
T d1n40a_ 81 VVNNMGNIADAGLRKAVMKAITPKAPGLEQFLRDTANSLLDNLITEGAPADLRNDFADPLATALHCKVLGIPQEDGPKLF 160 (395)
T ss_dssp GGGHHHHHHHTTCHHHHHHHTSSCSTTHHHHHHHHHHHHHHHHHHHCSCEETTTTTHHHHHHHHHHHHHTCCGGGHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 76537871579999999987309999988789999999862033356664418888777655457777522345677777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ls~~el~~~~~~l~~AG~eTTa~~ 240 (395)
T d1n40a_ 161 RSLSIAFMSSADPIPAAKINWDRDIEYMAGILENPNITTGLMGELSRLRKDPAYSHVSDELFATIGVTFFGAGVISTGSF 240 (395)
T ss_dssp HTHHHHTBCCSSCCHHHHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHTSGGGTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHH
T ss_conf 65433333200136999999999999878899875103677777666430566665540035678999875200012335
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 l~~~l~~L~~~P~~~~~l~~e~~~~~~~i~E~lRl~~p~~~~~~R~a~~d~~i~G~~ip~G~~V~~~~~~a~rDp~~f~d 320 (395)
T d1n40a_ 241 LTTALISLIQRPQLRNLLHEKPELIPAGVEELLRINLSFADGLPRLATADIQVGDVLVRKGELVLVLLEGANFDPEHFPN 320 (395)
T ss_dssp HHHHHHHHHTCHHHHHHHHHCGGGHHHHHHHHHHTCCCBCSCEEEEESSCEEETTEEECTTCEEEECHHHHHTCTTTSSS
T ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
T ss_conf 67888877629630001110123433323320134554543212210232112234565542022201212456200898
Q ss_pred --------------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------------9
Q 000711 482 --------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------------------------------s 482 (1338)
=
T Consensus 321 P~~F~p~R~~~~~~l~FG~G~h~C~G~~lA~~e~~~~l~~ll~r~p~~~l~~~~~~~~~~~~~~~r~~~~LpV~~ 395 (395)
T d1n40a_ 321 PGSIELDRPNPTSHLAFGRGQHFCPGSALGRRHAQIGIEALLKKMPGVDLAVPIDQLVWRTRFQRRIPERLPVLW 395 (395)
T ss_dssp TTSCCTTCSSTTCSSTTCCGGGCCTTHHHHHHHHHHHHHHHHHHCTTCEESSCGGGCCBCCSBSBCCBSCCEEEC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEECCCCCCCCCEEEEEEC
T ss_conf 021387899998877779988369149999999999999999967997888885667461686333871216569
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=100.00 E-value=0 Score=29711.61 Aligned_cols=1 Identities=0% Similarity=-0.327 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~T~~vh~g~~~d~~gav~~PI~~sst~~~~~~~~~~~~~~~~~~~~~YsR~~nPT~~~le~~la~LEg~~~a~~~ 80 (394)
T d1e5ea_ 1 ERMTPATACIHANPQKDQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLEGKIAFLEKTEACVAT 80 (394)
T ss_dssp CCCCHHHHHHHSSCCCCTTCCSSCCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCCCHHHHHEECCCCCCCCCCEECCCCCCCCEEECCHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99997899646889989999830880488886518889998751688678534598887899999999998298502234
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 sSGmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d~~d~~~~~~~i~~~t~lv~~Etp~NP~l~v 160 (394)
T d1e5ea_ 81 SSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKI 160 (394)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHHCCTTEEEEEEESSCTTTCCC
T ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCCCCCEEEEECCCCCCEEE
T ss_conf 36228889998740233443344541320036767777630543542147899999997516456589994257763122
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~Di~~~~~~~~~~~g~~vvvDnT~atP~~~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G~ 240 (394)
T d1e5ea_ 161 IDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGS 240 (394)
T ss_dssp CCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCC
T ss_pred EHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHCCCCEEEECHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 12444420132456708873376547645784011798899612342078743233334431468999999999973277
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~lsp~~a~ll~rgl~TL~lRm~r~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~~~~~~~~a 320 (394)
T d1e5ea_ 241 VISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGA 320 (394)
T ss_dssp CCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHHH
T ss_pred CCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHCCCCCCCCEEEEECCCCHHHH
T ss_conf 78867799999601068899999988899999997652884577577756632155530344667872454026989999
Q ss_pred -------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~f~~~l~l~~~a~SlGg~eSLi~~p~~~th~~~~~~~r~~~Gi~~~liRlSVGlEd~eDLi~Dl~qAl~~l~~ 394 (394)
T d1e5ea_ 321 KKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGIEDADELIADFKQGLDALLR 394 (394)
T ss_dssp HHHHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCCEEECCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHC
T ss_conf 99998088061535668766035785102521189999996698939799976218999999999999999639
|
| >d1phpa_ c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=0 Score=29711.56 Aligned_cols=1 Identities=0% Similarity=-1.125 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 M~~ktl~d~d~~~K~VlvR~D~NvPi~~g~I~d~~RI~~~~pTI~~ll~~~akvvl~SH~GRPkgk~~~~~Sl~~~~~~L 80 (394)
T d1phpa_ 1 MNKKTIRDVDVRGKRVFCRVDFNVPMEQGAITDDTRIRAALPTIRYLIEHGAKVILASHLGRPKGKVVEELRLDAVAKRL 80 (394)
T ss_dssp CCBCBGGGSCCTTCEEEEECCCCCCEETTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCSSCCGGGCSHHHHHHH
T ss_pred CCCCCCCCCCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 99785111376799999994058776099389758999999999999978998999858889999888655569999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~l~~~v~f~~~~~~~~~~~~i~~l~~g~i~lLEN~Rf~~~E~~nd~~fak~La~l~DiyVNDAF~~aHR~haS~~gi~ 160 (394)
T d1phpa_ 81 GELLERPVAKTNEAVGDEVKAAVDRLNEGDVLLLENVRFYPGEEKNDPELAKAFAELADLYVNDAFGAAHRAHASTEGIA 160 (394)
T ss_dssp HHHHTSCCEECSCSSSHHHHHHHHTCCTTCEEECCCGGGSHHHHHTCHHHHHHHHTTCSEEEECCGGGTTSCCTTTTGGG
T ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCHHHHHHHCCCCCEEEECCHHHHHCCCCCCCCHH
T ss_conf 87406241113443567899999605789788635445354432153889974254488999665136551477511000
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~lps~aG~l~ekEi~~L~~~l~~p~rP~~aIiGGaKisdKi~~i~~l~~k~D~i~igG~mantfl~a~G~~iG~sl~e~ 240 (394)
T d1phpa_ 161 HYLPAVAGFLMEKELEVLGKALSNPDRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLEE 240 (394)
T ss_dssp GTSCEEECHHHHHHHHHHHHHHHSCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTHHHHHHHHTTCCCTTSCCCG
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCEEEECCHHHHHHHHHCCCCCCCCCCCC
T ss_conf 02662001108999999999973899976999706763327999987875357278742287999998599667324331
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~a~~i~~~~~~~~~~i~lP~D~v~~~~~~~~~~~~~~~~~~i~~~~~ilDIG~~Ti~~~~~~I~~aktI~WNGPmG 320 (394)
T d1phpa_ 241 DKIELAKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAIPADWSALDIGPKTRELYRDVIRESKLVVWNGPMG 320 (394)
T ss_dssp GGHHHHHHHHHHHHHHTCEEECCSEEEEESSSSTTSCEEEEEGGGCCTTCEEEEECHHHHHHHHHHHHTCSEEEEESCSS
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHHCEEEEECCEE
T ss_conf 14778999998776429865588630432123455662477701214786003567248999999986530589955523
Q ss_pred -------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~fE~~~F~~GT~~l~~~ia~~~~a~sivGGGdT~aai~~~g~~~~~shvSTGGGA~Le~L~G~~LPgi~aL~~k 394 (394)
T d1phpa_ 321 VFEMDAFAHGTKAIAEALAEALDTYSVIGGGDSAAAVEKFGLADKMDHISTGGGASLEFMEGKQLPGVVALEDK 394 (394)
T ss_dssp CTTSGGGCHHHHHHHHHHHHCTTCEEEECSHHHHHHHHHTTCGGGSSEECSCTHHHHHHHTTCCCHHHHTSCBC
T ss_pred EEECCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCCHHHHHHCC
T ss_conf 56346241899999999996589869995779999999749867885796678999999879997358785169
|
| >d1u1ha1 c.1.22.2 (A:2-395) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: UROD/MetE-like family: Cobalamin-independent methionine synthase domain: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=0 Score=29708.11 Aligned_cols=1 Identities=0% Similarity=0.470 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
+
T Consensus 1 ~~~~lG~PRig~~RELK~A~E~yw~G~is~~eL~~~~~~~~~~~~~~Q~~aGid~I~~GeFs~yD~vLD~~~~~g~iP~R 80 (394)
T d1u1ha1 1 ASHIVGYPRMGPKRELKFALESFWDGKSTAEDLQKVSADLRSSIWKQMSAAGTKFIPSNTFAHYDQVLDTTAMLGAVPPR 80 (394)
T ss_dssp CBBCSCCCCSCTTCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTTCSBCEESCCCSSCHHHHHHHHTTCCCGG
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 98767589889761899999999779999999999999999999999998599961559840258899999981996534
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 f~~~~~~~~ld~yFa~arg~~~~~a~emtkwfdtnyhy~vPe~~~~~~~~l~~~~~~~~~~ea~~~g~~~Kpvl~GP~T~ 160 (394)
T d1u1ha1 81 YGYTGGEIGLDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPEVNFSYASHKAVNEYKEAKALGVDTVPVLVGPVSY 160 (394)
T ss_dssp GCCCSSSCCHHHHHHHHHCBTTBCCCCEEECTTSSCEEECCEECTTCCCCCCCCHHHHHHHHHHHTTCCCEEEEECHHHH
T ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHH
T ss_conf 44445666288887887258764444554345789774577407886345540168999998763487646245778999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 l~l~k~~~~~~~~~~~~~ll~~L~~aY~~~l~~L~~aG~~~VQiDEP~L~~dl~~~~~~~~~~ay~~l~~~~~~~~i~l~ 240 (394)
T d1u1ha1 161 LLLSKAAKGVDKSFELLSLLPKILPIYKEVITELKAAGATWIQLDEPVLVMDLEGQKLQAFTGAYAELESTLSGLNVLVE 240 (394)
T ss_dssp HHTCEECTTCCTTCCGGGGHHHHHHHHHHHHHHHHHHTCCEEEEECGGGGSCCCHHHHHHHHHHHHHHTTTTTTSEEEEE
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 97753247876544799999999999999999987665988986062021369999999999999999864489974378
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 tyfg~~~~~~~~~l~~~~~Vd~l~lD~~~~~~~l~~~~~~~p~~k~L~~GVVdgrniw~ed~e~v~~~i~~~~~~v~~er 320 (394)
T d1u1ha1 241 TYFADIPAEAYKTLTSLKGVTAFGFDLVRGTKTLDLVKAGFPEGKYLFAGVVDGRNIWANDFAASLSTLQALEGIVGKDK 320 (394)
T ss_dssp CCSSCCCHHHHHHHTTCTTCCEEEEETTTCTTHHHHHHHCCCTTCEEEEEEECSSSCBCCCHHHHHHHHHHHHHHSCSSC
T ss_pred ECCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 60488763568888636798735788523851148898758755689754681478886999999999999997379200
Q ss_pred -------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 l~lspsCsLlh~P~~~~~e~~l~~~~~~~lafa~~k~~e~~~l~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~n 394 (394)
T d1u1ha1 321 LVVSTSCSLLHTAVDLINETKLDDEIKSWMAFAAQKVVEVNALAKALAGQKDEALFSANAAALASRRSSPRVTN 394 (394)
T ss_dssp EEEEESSCGGGSCSCGGGCCSSCHHHHHTBCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHCTTTCC
T ss_pred EEEECCCCCCCCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99938998767787174335799889845151999999999999997288308999999999998843887789
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=0 Score=29707.61 Aligned_cols=1 Identities=0% Similarity=-1.490 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~~d~i~~l~~~~~~d~~~~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~ 80 (394)
T d2ay1a_ 1 MLGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGE 80 (394)
T ss_dssp CGGGCCCCCCCSHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 98778878998399999997178998978851787658889989888999999998508878988997778999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~ 160 (394)
T d2ay1a_ 81 LILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMK 160 (394)
T ss_dssp HHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHH
T ss_pred HHHCCCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHCCCEEEEECCCCHHCCCCCCHHHH
T ss_conf 97365654346420003572688889988765428844999832321011899998599799941430101442202688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s 240 (394)
T d2ay1a_ 161 ADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAAS 240 (394)
T ss_dssp HHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEE
T ss_pred HHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEECCCHHHCCCCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 88764136868999479999899989999999999875304289987525122211666664045544443245443345
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~ 320 (394)
T d2ay1a_ 241 CSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLRE 320 (394)
T ss_dssp CTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 55666677654201030426899999865366765202423224788889887227888999999999999999999999
Q ss_pred -------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------------------s 482 (1338)
.
T Consensus 321 ~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls~~~~~~L~~~~~V~~~~g~Ri~~a~l~~~~i~~l~~ai~~v~~ 394 (394)
T d2ay1a_ 321 QLAGELRDLSGSDRFGFVAEHRGMFSRLGATPEQVKRIKEEFGIYMVGDSRINIAGLNDNTIPILARAIIEVGV 394 (394)
T ss_dssp HHHHHHHHHHTSSTTTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCCCEEEECCCCEEEEECCCCHHHHHHHHHHCCEEECCCCEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 99999998489886036779961698519399999999996898956987899537998889999999998279
|
| >d1qo7a_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Aspergillus niger [TaxId: 5061]
Probab=100.00 E-value=0 Score=29707.30 Aligned_cols=1 Identities=0% Similarity=-1.458 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~p~~~~~~~~pf~i~~~~~~~~~l~~~l~~~r~~~~~~~~~~~~~~~g~~~~~~~~l~~~w~~~~dw~~~e~~ln 80 (394)
T d1qo7a_ 1 KAFAKFPSSASISPNPFTVSIPDEQLDDLKTLVRLSKIAPPTYESLQADGRFGITSEWLTTMREKWLSEFDWRPFEARLN 80 (394)
T ss_dssp CTTCCCCTTCCSCCCBCCCCCCHHHHHHHHHHHHHCCCCCCCTGGGCTTCTTSSCHHHHHHHHHHHHHTCCHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 99788999897787364635899999999999984478997445677753459889999999998634389899999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~f~~~i~G~~iHf~h~~~~~~~~~pLlLlHG~P~s~~~w~~vi~~La~~g~~~~~~f~VIaPDLpG~G~S~~P~~~~ 160 (394)
T d1qo7a_ 81 SFPQFTTEIEGLTIHFAALFSEREDAVPIALLHGWPGSFVEFYPILQLFREEYTPETLPFHLVVPSLPGYTFSSGPPLDK 160 (394)
T ss_dssp TSCEEEEEETTEEEEEEEECCSCTTCEEEEEECCSSCCGGGGHHHHHHHHHHCCTTTCCEEEEEECCTTSTTSCCCCSSS
T ss_pred CCCCEEEEECCEEEEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC
T ss_conf 68975999879888999972258998779993665411899999887641135776550444345424347889998777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~y~~~~~a~~~~~l~~~lg~~~~~~vg~~~Gg~v~~~~a~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (394)
T d1qo7a_ 161 DFGLMDNARVVDQLMKDLGFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNLCAMRAPPEGPSIESLSAAEKEGIARME 240 (394)
T ss_dssp CCCHHHHHHHHHHHHHHTTCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCCCCCSCSSSCCGGGSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 65788999999998764047624899840765178999887512521015764034322344321000135677888777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~ 320 (394)
T d1qo7a_ 241 KFMTDGLAYAMEHSTRPSTIGHVLSSSPIALLAWIGEKYLQWVDKPLPSETILEMVSLYWLTESFPRAIHTYRETTPTAS 320 (394)
T ss_dssp HHHHHSCHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHHHHTTCHHHHGGGHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
T ss_conf 77775555555430125555432024520046677787642244568879999999987500132056799999842235
Q ss_pred -------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------------------s 482 (1338)
=
T Consensus 321 ~~~~~~~~~~~~~i~vPtlv~~g~~D~~~~p~~~~~~~~~~~~~~~~~~~GHf~~~E~Pe~~a~~I~~Fl~~v~ 394 (394)
T d1qo7a_ 321 APNGATMLQKELYIHKPFGFSFFPKDLCPVPRSWIATTGNLVFFRDHAEGGHFAALERPRELKTDLTAFVEQVW 394 (394)
T ss_dssp ------CTTTTTCEEEEEEEEECTBSSSCCCHHHHGGGEEEEEEEECSSCBSCHHHHCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHCCCCEEEEECCCCCCCHHHHCHHHHHHHHHHHHHHHC
T ss_conf 66222321237840687589980888532589999864684699985994781478699999999999999759
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=100.00 E-value=0 Score=29703.53 Aligned_cols=1 Identities=0% Similarity=-1.125 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~f~~~~~r~~~~s~k~~~~~~~~~~~g~~vi~l~~g~pdf~~p~~v~~al~~~~~~~~~~Y~~g~~~Lr~aia~~~~ 80 (394)
T d1c7na_ 1 MIYDFTTKISRKNLGSLKWDLMYSQNPEVGNEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMK 80 (394)
T ss_dssp CCCCSCCCCCCTTTTBHHHHHHHHHCTTCCTTCCCCCSSSCSSCCCHHHHHHHHHHHHHCCCSSBCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 97678977677999878899999876754997688327997999889999999999857886899987999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~g~~~~~~~I~vt~G~~~al~~~~~~~~~pgd~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~ 160 (394)
T d1c7na_ 81 DRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLS 160 (394)
T ss_dssp HHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHH
T ss_pred HHCCCCCCCCCEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 85599888750476334212343321034444332333467662046677654300222222245655540255666553
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~ 240 (394)
T d1c7na_ 161 KDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTF 240 (394)
T ss_dssp TCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHH
T ss_pred CCCCCEEEEECCCCCCCCEECCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCC
T ss_conf 04563299945523565412569995343203454320586145532124588666410111002311103234542001
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~G~R~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (394)
T d1c7na_ 241 NIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAP 320 (394)
T ss_dssp TCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEC
T ss_conf 22222322223567033445555543003443222221024554200144301311121012321000121256530422
Q ss_pred -------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~p~g~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~i~eal~rl~~~l~~Lk 394 (394)
T d1c7na_ 321 LIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKDLK 394 (394)
T ss_dssp CCSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCC
T ss_conf 78950489897888899999999999986999997423418899987999995899999999999999999639
|
| >d2pb1a1 c.1.8.3 (A:7-400) Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) [TaxId: 5476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Exo-beta-(1,3)-glucanase species: Yeast (Candida albicans) [TaxId: 5476]
Probab=100.00 E-value=0 Score=29702.80 Aligned_cols=1 Identities=0% Similarity=0.105 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
|
T Consensus 1 ~~~~~~~~~rGvNlGgwlv~E~w~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~h~~~~it~~D~~~i~~~ 80 (394)
T d2pb1a1 1 AWDYDNNVIRGVNLGGWFVLEPYMTPSLFEPFQNGNDQSGVPVDEYHWTQTLGKEAALRILQKHWSTWITEQDFKQISNL 80 (394)
T ss_dssp CCCTTTCCEEEEECTTSSSCCTTTCGGGTGGGCBTTBCTTSCCSHHHHHHHHCHHHHHHHHHHHHHHSSCHHHHHHHHHT
T ss_pred CCCCCCCEEEEEECCHHHCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHC
T ss_conf 97888977898864334305765583344313677765443201888998739687999999998604889999999977
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 G~N~VRiPv~~~~~~~~~~~~~~~~~~~~ld~~i~~a~~~gl~VilDlH~~pg~~~~~~~~g~~~~~~~~~~~~~~~~~~ 160 (394)
T d2pb1a1 81 GLNFVRIPIGYWAFQLLDNDPYVQGQVQYLEKALGWARKNNIRVWIDLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLN 160 (394)
T ss_dssp TCCEEEEEEEGGGTCCCTTCCCCCCHHHHHHHHHHHHHHTTCEEEEEEEECTTCSSCCGGGSSTTCCCTTSTTHHHHHHH
T ss_pred CCCEEEEEECHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99889998027884488877552368999999999999799189998511588666767767667644366779999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~ia~~~~~~~~~~~v~g~el~NEP~~~~~~~~~~~~~~~~~~~~IR~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~ 240 (394)
T d2pb1a1 161 VLNTIFKKYGGNEYSDVVIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAFQVFGYWNNFLTVAEGQW 240 (394)
T ss_dssp HHHHHHHHHSSGGGTTTEEEEESCSCCCGGGSCHHHHHHHHHHHHHHHHHTTCCCCEEEECTTCCTTTTTTSSCGGGTCC
T ss_pred HHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCCCCCC
T ss_conf 99999999715887770688741356786654378999999999999997389976998488755344444315788886
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~vv~d~H~Y~~f~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ge~s~~~~d~~~~~~~~~~~~~~~g~~~~~~~~Ge~ 320 (394)
T d2pb1a1 241 NVVVDHHHYQVFSGGELSRNINDHISVACNWGWDAKKESHWNVAGEWSAALTDCAKWLNGVNRGARYEGAYDNAPYIGSC 320 (394)
T ss_dssp SEEEEEECCSCSSHHHHTCCHHHHHHHHHHHHHHHHTCSSEEEEEECCSCSSCCSTTTTCTTCCCTTBTCSTTCCBCCCS
T ss_pred EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEECEECCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 27985311434678655689888787663034555315676120201023005666623655342214654787655646
Q ss_pred -------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~d~~~~~~~~~~~~r~~~~aQ~~~~e~~~GW~fWt~K~~~~~~W~~~~~~~~G~iP~~~~~~~~~~~c~~~ 394 (394)
T d2pb1a1 321 QPLLDISQWSDEHKTDTRRYIEAQLDAFEYTGGWVFWSWKTENAPEWSFQTLTYNGLFPQPVTDRQFPNQCGFH 394 (394)
T ss_dssp GGGSSGGGCCHHHHHHHHHHHHHHHHHHHTTTEEEESCSCCSSCGGGCHHHHHHTTCSCSSTTCCSSTTSSCCC
T ss_pred CCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCHHCCCCCCCCCC
T ss_conf 66567101678899999999999999985279678963016999988889998788969991323688888999
|
| >d1lfka_ a.104.1.1 (A:) p450 monoxygenase OxyB {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: p450 monoxygenase OxyB species: Amycolatopsis orientalis [TaxId: 31958]
Probab=100.00 E-value=0 Score=29702.40 Aligned_cols=1 Identities=0% Similarity=-1.059 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~p~~~~~~~~dp~~~lr~~~p~~~~~~~~~~~~~~~w~vt~~~dv~~Vl~d~~~f~s~~~~~~~~~~~~~~~~~~~~~ 80 (394)
T d1lfka_ 1 DPRPLHIRRQGLDPADELLAAGALTRVTIGSGADAETHWMATAHAVVRQVMGDHQQFSTRRRWDPRDEIGGKGIFRPREL 80 (394)
T ss_dssp CCSCGGGCEETTEECHHHHTSCSEEEEC------CCCEEEECSHHHHHHHHHCTTTEEECTTCCC-------------CC
T ss_pred CCCCHHCCCCCCCCHHHHHHHCCEEEEECCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 98961104235995799997499058978888888668996799999999759864547765565444565433340432
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~ll~~Dg~~H~~~R~~l~~~fs~~~v~~~~~~i~~~~~~ll~~l~~~g~~~Dl~~~~~~~~~~~~~~~~~g~~~~~~~ 160 (394)
T d1lfka_ 81 VGNLMDYDPPEHTRLRRKLTPGFTLRKMQRMAPYIEQIVNDRLDEMERAGSPADLIAFVADKVPGAVLCELVGVPRDDRD 160 (394)
T ss_dssp TTCGGGCCTTHHHHHHHHHGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCSSEEHHHHTTTTHHHHHHHHHHTCCGGGHH
T ss_pred CCCHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEEEEECCCCCHHHHH
T ss_conf 34133048756899998854331999999998899999999986520268763025676541111021100475301389
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~ag~~tt~~~ 240 (394)
T d1lfka_ 161 MFMKLCHGHLDASLSQKRRAALGDKFSRYLLAMIARERKEPGEGMIGAVVAEYGDDATDEELRGFCVQVMLAGDDNISGM 240 (394)
T ss_dssp HHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHGGGSCHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 99998862233210037999999999999999999864002210000001013678989999999999998643205889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~r~~~~~~~~~~r~~~~d~~~~g~~ip~G~~V~~~~~~~~rdp~~~~d 320 (394)
T d1lfka_ 241 IGLGVLAMLRHPEQIDAFRGDEQSAQRAVDELIRYLTVPYSPTPRIAREDLTLAGQEIKKGDSVICSLPAANRDPALAPD 320 (394)
T ss_dssp HHHHHHHHHHSGGGGGGGSSCHHHHHHHHHHHHHHHCCBSCCSCEEESSCEEETTEEECTTCEEEECHHHHTTCTTTCTT
T ss_pred HHHHHHHHHCCHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCCEEECCCCCEEECCCEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999875222045543101223332110000000023321012113567121483542687401232334679212667
Q ss_pred -------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------------------s 482 (1338)
=
T Consensus 321 P~~F~PeR~~~~~lpFG~G~r~C~G~~lA~~e~~~~l~~Ll~~f~~~~l~~p~~~~~~~~~~~~~g~~~lpv~~ 394 (394)
T d1lfka_ 321 VDRLDVTREPIPHVAFGHGVHHCLGAALARLELRTVFTELWRRFPALRLADPAQDTEFRLTTPAYGLTELMVAW 394 (394)
T ss_dssp TTSCCTTSCCCCCCTTCCSTTSCTTHHHHHHHHHHHHHHHHHHCTTCEESSTTCCCEEECSSSBCEEEECEEEC
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEEECCCCCCCCEEEEEEC
T ss_conf 33218899999988878987578069999999999999999967988778886766030687777870005359
|
| >d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Glycyl-tRNA synthetase (GlyRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=29708.43 Aligned_cols=1 Identities=0% Similarity=0.305 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~s~e~i~~l~KRRgFv~pS~EIYGGlaG~yDyGPlG~~LK~Ni~~~Ww~~fv~~~e~~~~id~~ii~p~~V~kASGHv 80 (394)
T d1atia2 1 AASSLDELVALCKRRGFIFQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHE 80 (394)
T ss_dssp CCCCHHHHHHHHHHTTSEEETTGGGTCCTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETTHHHHTSHH
T ss_pred CCCCHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHCCCC
T ss_conf 93209999999984577415712226710155768427999999999999987540477777513344898886206787
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~F~D~mv~c~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~~g~~~~~t 160 (394)
T d1atia2 81 ATFADPMVDNRITKKRYRLDHLLKEQPEEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWT 160 (394)
T ss_dssp HHCEEEEEEC--------------------------------------------------------------------CC
T ss_pred CCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 88764420267777532022677665565543321134555666889999875476866525876178899889867767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~FNLMF~T~iGp~~~~~~~~yLRPETAQGiFvnF~~~l~~~r~KlPFGiAQIGk~FRNEIsPr~~l~R~REF~q~Ei 240 (394)
T d1atia2 161 PPRYFNMMFQDLRGPRGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEI 240 (394)
T ss_dssp CCEEEECBEEEECSSCCCGGGEEEECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEE
T ss_pred CCCHHHHHCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 50022100012323345656336777013069999799999971567880112432211466376557756332212026
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 E~Fv~P~~~~~~~~yw~~~~~~f~~~lGi~~~~lrfrqh~~~ElAHYa~~~~DiE~~fp~Gw~El~GiA~RtdyDL~~H~ 320 (394)
T d1atia2 241 EYFVRPGEDEYWHRYWVEERLKWWQEMGLSRENLVPYQQPPESSAHYAKATVDILYRFPHGSLELEGIAQRTDFDLGSHT 320 (394)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHHHHTTCCGGGEEEEECCTTTSCTTCSEEEEEEEEETTEEEEEEEEEECTTHHHHHHC
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHCCCCEEEEEEECCCCCEECHHHHCCCHHHHHHHH
T ss_conf 89981785157788899999999998368833336775052355540545278999669985840413143121478776
Q ss_pred -------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------------------s 482 (1338)
=
T Consensus 321 k~~~~~~~~~~~~~~~~s~~~l~~~d~~~~~~~iPhVIEPS~GldR~~la~L~~ay~eee~~~~e~R~vLkl~P 394 (394)
T d1atia2 321 KDQEALGITARVLRNEHSTQRLAYRDPETGKWFVPYVIEPSAGVDRGVLALLAEAFTREELPNGEERIVLKLKP 394 (394)
T ss_dssp SSTTTTTCCSCCCCCSCCCSCCCEECSSSCCEECCEEEEEEEEHHHHHHHHHHHHEEEEECTTSCEEEEECCCG
T ss_pred HHCCCCCHHHHHHCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 42033202344312777663467880678907850178758882189999999876434227997259983599
|
| >d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: 1416]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp. 707 [TaxId: 1416]
Probab=100.00 E-value=0 Score=29698.57 Aligned_cols=1 Identities=0% Similarity=-0.992 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~q~f~w~~~~~g~~~~~i~~kLdyL~~LGv~aIwL~Pi~~~~~~~~~gY~~~~~yd~~~~~~~~~vd~~~Gt~~d 80 (394)
T d2d3na2 1 TNGTMMQYFEWYLPNDGNHWNRLNSDASNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGEFNQKGTVRTKYGTRSQ 80 (394)
T ss_dssp CCCCEEECCCTTCCSSSCHHHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSCSEEETTCSSCSCBTTBSSBTTBCHHH
T ss_pred CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 98627887742657889719999998999997199989979570178878889786667554434446776888999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 f~~Lv~~aH~~GIkVilDvV~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (394)
T d2d3na2 81 LQAAVTSLKNNGIQVYGDVVMNHKGGADATEMVRAVEVNPNNRNQEVTGEYTIEAWTRFDFPGRGNTHSSFKWRWYHFDG 160 (394)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSEECSCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGGEEE
T ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999987998999971266567664310012235765433334564443444345676556778765444445787
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~~~~~~~~w~~~~giDGfR~D~a~~~~~~ 240 (394)
T d2d3na2 161 VDWDQSRRLNNRIYKFRGHGKAWDWEVDTENGNYDYLMYADIDMDHPEVVNELRNWGVWYTNTLGLDGFRIDAVKHIKYS 240 (394)
T ss_dssp ESCCTTTCCSSCEEEECSTTCCCCSSCCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHTCSEEEETTGGGSCHH
T ss_pred CCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHH
T ss_conf 65556668888754006888765666652323420267762155888998788876565420567314774224437767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~gE~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~ 320 (394)
T d2d3na2 241 FTRDWINHVRSATGKNMFAVAEFWKNDLGAIENYLQKTNWNHSVFDVPLHYNLYNASKSGGNYDMRNIFNGTVVQRHPSH 320 (394)
T ss_dssp HHHHHHHHHHHHHTCCCEEEECCCCSCHHHHHHHHHHTTTCSEEECHHHHHHHHHHHHTTTCSCGGGTTTTCHHHHCGGG
T ss_pred HHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCHHCCCCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHH
T ss_conf 89999999987408740210212366632120010033442111037899999999840760539998721511069868
Q ss_pred -------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------------------s 482 (1338)
=
T Consensus 321 ~v~fl~NHD~~r~~~~~~~~~~~~~~la~a~~l~~~pGiP~iyyGdE~G~~~~~~p~~r~~~~~l~~~r~~~~~ 394 (394)
T d2d3na2 321 AVTFVDNHDSQPEEALESFVEEWFKPLAYALTLTREQGYPSVFYGDYYGIPTHGVPAMRSKIDPILEARQKYAY 394 (394)
T ss_dssp EEECSCCTTTSTTSTTCCCCCTTTHHHHHHHHHSSSSSEEEEEHHHHHCBGGGTBCCCHHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 05767288686524455673199999999999984999679972672098998895548999999999998479
|
| >d1q8ia2 e.8.1.1 (A:390-783) Family B DNA polymerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: DNA polymerase I domain: Family B DNA polymerase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29700.95 Aligned_cols=1 Identities=0% Similarity=-0.792 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~y~Gg~V~~p~~G~~~~v~~lDf~SLYPsii~~~Ni~p~t~v~~~~~~~~~~~~~~~~~~~~~~~~g~lp~~ 80 (394)
T d1q8ia2 1 NLGEVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIVRTFLIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLPEI 80 (394)
T ss_dssp CTTCSCCCCCCCCCCBCCCCEEEEEEEEEEETTHHHHHHHHHCCCHHHHHHHHHSCSTTTEEECSTTCEEESSSCSHHHH
T ss_pred CCCCCCCCCCCCCEECCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHH
T ss_conf 99888998899837837999757885588831127999999679965437877678876555786543332001178999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 l~~l~~~R~~~K~~~~d~~Q~a~Ki~~NS~YG~~g~~~~~~~~~~~A~~iT~~Gr~~i~~~~~~~e~~g~~ViygDTDSi 160 (394)
T d1q8ia2 81 VTNIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDST 160 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSEE
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 99999742100002321024789871221206002455521136788889888589999988631223466650356418
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~E~~~~~~~~~~kk~~~~~~kkrY~g~~~~~~~~~~ 240 (394)
T d1q8ia2 161 FVWLKGAHSEEEAAKIGRALVQHVNAWWAETLQKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQRM 240 (394)
T ss_dssp EEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCEEEEEEEEEEEECCCCTTCTTCCSCEEEEEEETTEEEE
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHEEEEHHHHHHHHHHHHHHHCCEEECCCCEE
T ss_conf 99947971245677889999998877656676665113432002553200000022112113234433000011233247
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~KG~e~vRrd~~~~~k~~~~~vl~~i~~~~~~~e~vk~~~~~l~~~~i~~~~i~~~~l~k~~~~y~~~~~~hV~~a~~~ 320 (394)
T d1q8ia2 241 VFKGLETVRTDWTPLAQQFQQELYLRIFRNEPYQEYVRETIDKLMAGELDARLVYRKRLRRPLSEYQRNVPPHVRAARLA 320 (394)
T ss_dssp EEESSCC--CCCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTTTTGGGGCC-------------------------
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHEEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 88750014666662677898989999963626888899999987605877045044543156000356787699999999
Q ss_pred -------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------------------s 482 (1338)
=
T Consensus 321 ~~~~~~~~~~~~~~~g~~i~Yv~~~~~~~~~~~~~~~iD~~yYi~~qi~~~~~ril~~~~~~~~~~~~~~~~LF 394 (394)
T d1q8ia2 321 DEENQKRGRPLQYQNRGTIKYVWTTNGPEPLDYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQLGLF 394 (394)
T ss_dssp -----------------------------------CCCCHHHHHHHTHHHHHHTTGGGGTCCHHHHHHHHHCC-
T ss_pred HHHHHHCCCCCCCCCCCEEEEEEECCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCC
T ss_conf 98766327988899898679999899986577548998789999974089999998762788999974686889
|
| >d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cullin repeat-like family: Cullin repeat domain: Cullin homolog 1, Cul-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=29706.27 Aligned_cols=1 Identities=0% Similarity=-1.423 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~d~~W~~L~~ai~~I~~~~~~~~~~~~~lY~~vy~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~~l~~~l 80 (394)
T d1ldja2 1 LDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFL 80 (394)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 96349999999999986699997999999999999994487432000111101121000121025457999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~l~~i~~~~~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~~~~~~~~~~I~~~~l~~fr~~v~~~~~ 160 (394)
T d1ldja2 81 KNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFRPLN 160 (394)
T ss_dssp HHHHHHHHHTTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHTTHHHHTTTTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999877437879999999999999999999999999886689988604445666541999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~l~~~il~~I~~~R~g~~i~~~li~~~i~~l~~l~~~~~~~~~~~~~~~~Y~~~FE~~~L~~t~~~Y~~~~~~~l~~~~ 240 (394)
T d1ldja2 161 KQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNP 240 (394)
T ss_dssp THHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999998678966699999999999994832323330132278878998999999999999999999998498
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~eYl~~v~~~l~eE~~r~~~yl~~~t~~~l~~~l~~~LI~~~~~~l~~~~~~ll~~~~~~~L~~lY~L~~rv~~~~~~l 320 (394)
T d1ldja2 241 VTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFHTEFQNLLDADKNEDLGRMYNLVSRIQDGLGEL 320 (394)
T ss_dssp TTSSHHHHHHHHHHHHHTTTTTTCSSSSHHHHHHHHHHHSSSSSHHHHHHHHHHHHSCCTTHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 35899999999999999999746864699999999999999999999999999987165889999999986553518999
Q ss_pred -------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~~I~~~G~~~i~~~~~~~~~~~~~~V~~ll~l~~~~~~ii~~~F~~d~~f~~~l~~af~~fiN~n~~~~ 394 (394)
T d1ldja2 321 KKLLETHIHNQGLAAIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTK 394 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSGGGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999999999997233114578689999999999999999999859988999999999999837666689
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=29632.48 Aligned_cols=1 Identities=0% Similarity=-0.061 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 t~~~~~~f~T~~vHag~~~d~~gav~pPI~~ssTf~~~~~~~~~~~y~YsR~gnPT~~~lE~~la~LE~~~~a~~~sSGm 80 (393)
T d1n8pa_ 1 TLQESDKFATKAIHAGEHVDVHGSVIEPISLSTTFKQSSPANPIGTYEYSRSQNPNRENLERAVAALENAQYGLAFSSGS 80 (393)
T ss_dssp CCCSSCCHHHHHHHTTCCCCSSCCSSCCBCCCSBCCBSSSSSBSSSCCBTTTCCHHHHHHHHHHHHHTTCSEEEEESCHH
T ss_pred CCCCCCCCCHHEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCH
T ss_conf 99878981042077898899898826882788765138864535773353899868999999999971995488834701
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 aAi~~~l~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~~~~~~~~~~i~~~t~lv~~EspsNP~l~v~Di~~i 160 (393)
T d1n8pa_ 81 ATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDLLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKV 160 (393)
T ss_dssp HHHHHHHHTSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESSHHHHHHHHSCSSEEEEEECSSCTTTCCCCCHHHH
T ss_pred HHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCEEEECCCCHHHHHCCCHHHH
T ss_conf 67776653035798344322001340344454541255225885135689999851201346723763234320203555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 a~~a~~~~~~~g~~lvVDnT~atP~~~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~~G~~~~p 240 (393)
T d1n8pa_ 161 ADLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSP 240 (393)
T ss_dssp HHHHHHHTTTTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCH
T ss_pred HHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHCCCEEEECCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCH
T ss_conf 54444201467845998567447044770541898999816644579886026301102166999999998643888986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~a~ll~rgl~Tl~lR~~~~~~nA~~lA~~L~~~~~~V~~V~yP~l~~~~~~~~a~~~~~~~~~G~~~sf~l~~~~~~~~ 320 (393)
T d1n8pa_ 241 FDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAAS 320 (393)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCCCEEEEEEECCHHHHH
T ss_conf 88999982775034679999998888999997336727997302334543200222103457877148999959999999
Q ss_pred ------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------9
Q 000711 482 ------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------------------------------s 482 (1338)
+
T Consensus 321 ~f~~~l~l~~~~~SlGg~~SLi~~p~~~~h~~~~~~~r~~~gi~~~liRlSvGlE~~~DLi~Dl~~AL~~a~~ 393 (393)
T d1n8pa_ 321 KFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQATN 393 (393)
T ss_dssp HHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCCEECCCCCCCCCEEECCHHHCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHC
T ss_conf 9997188443561677757147376022542289999996598949799986528999999999999999649
|
| >d1xlma_ c.1.15.3 (A:) D-xylose isomerase {Arthrobacter, strain b3728 [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: Xylose isomerase domain: D-xylose isomerase species: Arthrobacter, strain b3728 [TaxId: 1663]
Probab=100.00 E-value=0 Score=29628.61 Aligned_cols=1 Identities=0% Similarity=-1.157 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~p~~~~~f~~~~Wt~~~~g~dpFG~~t~~~~d~~~~~~~~~~lG~~~~~fHd~D~~p~~~~~~e~~~~~~~~k~~l~~~ 80 (393)
T d1xlma_ 1 VQPTPADHFTFGLWTVGWTGADPFGVATRKNLDPVEAVHKLAELGAYGITFHDNDLIPFDATEAEREKILGDFNQALKDT 80 (393)
T ss_dssp CCCCGGGCEEEEHHHHTCCCCBTTBCCCSCCCCHHHHHHHHHHHTCCEEEEEHHHHSCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 99984456417886146678899898878899999999999981998880352334888998788999999999999853
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 Gl~l~~~t~nlf~~p~~~~Ga~tnPD~~VR~~Ai~~~k~~idia~~LGa~~~v~W~G~~G~~~~~~~d~~~~~~~l~e~l 160 (393)
T d1xlma_ 81 GLKVPMVTTNLFSHPVFKDGGFTSNDRSIRRFALAKVLHNIDLAAEMGAETFVMWGGREGSEYDGSKDLAAALDRMREGV 160 (393)
T ss_dssp TCEEEEEECCCSSSGGGTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCSEEEECCSSSEESSGGGCCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 98110223664334355437756959999999999999999999996898499736888677777658999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~v~~~a~~~g~~~~~~IEpKP~EP~~~~~~~~~~~~l~fl~~~~~~~~~gvnlD~gH~~lag~~~~~~va~a~~~gkLg 240 (393)
T d1xlma_ 161 DTAAGYIKDKGYNLRIALEPKPNEPRGDIFLPTVGHGLAFIEQLEHGDIVGLNPETGHEQMAGLNFTHGIAQALWAEKLF 240 (393)
T ss_dssp HHHHHHHHHHTCSCEEEECCCSCSSSSEESSCSHHHHHHHHTTCTTGGGEEECCBHHHHHTTTCCHHHHHHHHHHTTCBC
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHCCCCE
T ss_conf 99999898629885698611677775554037599999999980894204575204524441577078898998669730
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~vh~Nd~~~~~~D~Dl~~gs~~~~~~~~~~~~l~~g~~~g~~~y~G~~~fD~~~~r~~~~e~~~~~~~~~~~~~~~l~~~ 320 (393)
T d1xlma_ 241 HIDLNGQRGIKYEQELVFGHGDLTSAFFTVDLLENGFPNGGPKYTGPRHFDYKPSRTDGYDGVWDSAKANMSMYLLLKER 320 (393)
T ss_dssp CCEECBCCSSSSCCCBCTTSSCHHHHHHHHHHHHHCCTTCCCCCCSCEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 24426787666666677885469999999999953664678787775588722667887306999999999999999999
Q ss_pred ------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------9
Q 000711 482 ------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 A~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~e~L~q~~~~~l~g~~ 393 (393)
T d1xlma_ 321 ALAFRADPEVQEAMKTSGVFELGETTLNAGESAADLMNDSASFAGFDAEAAAERNFAFIRLNQLAIEHLLGSR 393 (393)
T ss_dssp HHHHHHCHHHHHHHHHHTTTGGGSCSSCTTCCHHHHHTCGGGTTTCCHHHHTTCCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHCCHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf 9997519999999986565021045543899889999788753699845552232689999999999970489
|
| >d1kwga2 c.1.8.1 (A:1-393) A4 beta-galactosidase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: A4 beta-galactosidase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=29627.09 Aligned_cols=1 Identities=0% Similarity=-1.025 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~p~~~~~~~~~~D~~~~~~~G~n~vR~~i~~W~~iep~~G~~~~~~~d~~i~~~~~~Gi~~iv~l~~~~~P~w~ 80 (393)
T d1kwga2 1 MLGVCYYPEHWPKERWKEDARRMREAGLSHVRIGEFAWALLEPEPGRLEWGWLDEAIATLAAEGLKVVLGTPTATPPKWL 80 (393)
T ss_dssp CEEEECCGGGSCHHHHHHHHHHHHHHTCCEEEECTTCHHHHCSBTTBCCCHHHHHHHHHHHTTTCEEEEECSTTSCCHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCHHH
T ss_conf 94763584549999999999999982999899555346531888992687999999999998799999976777775343
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ne~~~~~~~~~~~~~~~~~~~ 160 (393)
T d1kwga2 81 VDRYPEILPVDREGRRRRFGGRRHYCFSSPVYREEARRIVTLLAERYGGLEAVAGFQTDNEYGCHDTVRCYCPRCQEAFR 160 (393)
T ss_dssp HHHCGGGSCBCTTSCBCCSSSSCCCCTTCHHHHHHHHHHHHHHHHHHTTCTTEEEEECSSSTTTTTTSCCCSHHHHHHHH
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHH
T ss_conf 21486501245778504666666667799999999999999998771688537887403555655775443167777778
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (393)
T d1kwga2 161 GWLEARYGTIEALNEAWGTAFWSQRYRSFAEVELPHLTVAEPNPSHLLDYYRFASDQVRAFNRLQVEILRAHAPGKFVTH 240 (393)
T ss_dssp HHHHHHHSSHHHHHHHHTTTGGGCCCSSGGGCCCSCSCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 88887665299999876530022223676545676555555662565899998777677787889875421465555435
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~d~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 320 (393)
T d1kwga2 241 NFMGFFTDLDAFALAQDLDFASWDSYPLGFTDLMPLPPEEKLRYARTGHPDVAAFHHDLYRGVGRGRFWVMEQQPGPVNW 320 (393)
T ss_dssp EECTTCCSSCHHHHGGGSSSEEEEECHHHHHHHSCCCHHHHHHTTTTCCTTHHHHHHHHHHHHTTTCEEEEEECCSCCSS
T ss_pred CCCCCCCCCCHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCC
T ss_conf 55566656423331256652121355555445566784223444446881688999999997347987036513666666
Q ss_pred ------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------9
Q 000711 482 ------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~~~~~~~~~~~~~aia~G~~~~gy~~W~~~~~~~E~~~~gL~~~d~~p~~~~~~~~~~~~~l~~~~~~ 393 (393)
T d1kwga2 321 APHNPSPAPGMVRLWTWEALAHGAEVVSYFRWRQAPFAQEQMHAGLHRPDSAPDQGFFEAKRVAEELAALALP 393 (393)
T ss_dssp SSSCCCCCTTHHHHHHHHHHHTTCSCEEEECSBCCSSSTTTTSCCSBCTTSCBCHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 6468889867999999999977998889857557889750010014078899578999999999999974499
|
| >d1g8ma2 c.97.1.4 (A:201-593) AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC domain: AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=100.00 E-value=0 Score=29627.11 Aligned_cols=1 Identities=100% Similarity=2.131 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
|
T Consensus 1 g~~~~~LRYGENPHQ~aA~~~~~~~~~~~~~l~gk~SyNN~lD~daA~~lv~ef~~~~~~Pa~vIiKH~NPCGvAi~~~~ 80 (393)
T d1g8ma2 1 GVSQLPLRYGMNPHQSPAQLYTTRPKLPLTVVNGSPGFINLCDALNAWQLVKELKQALGIPAAASFKHVSPAGAAVGIPL 80 (393)
T ss_dssp TTTEEEESCSSSTTSCCEEEECSSSSCSEEEEESCCCHHHHHHHHHHHHHHHHHHHHHCSCEEEEEETTEEEEEEECCCC
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHCCCCC
T ss_conf 99879887976805411386216874316886687027679889999999997465059976999768883366508551
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~e~~~~~~~~~~~~~~~~~l~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A~~i~~~F~EvIIAP~f~~eAleiL~~KKN 160 (393)
T d1g8ma2 81 SEEEAQVCMVHDLHKTLTPLASAYARSRGADRMSSFGDFIALSDICDVPTAKIISREVSDGVVAPGYEEEALKILSKKKN 160 (393)
T ss_dssp CHHHHHHTTCTTTGGGCCHHHHHHHHHHHSCTTTTTTEEEEESSCBCHHHHHHHHTSCEEEEEESCBCHHHHHHHHHGGG
T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCHHCCEEEEECCCCCCCHHHHHHHCCCCHHCCCCCCHHHHHHHHHCCC
T ss_conf 02332000012211346629999999871485100050788615533210243222020100113455677888742545
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 lRll~~~~~~~~~~~~~~~r~i~gg~L~Q~~d~~~~~~~~~~~v~~~~~~pt~~e~~dL~FAwkVvK~vKSNAIvlak~~ 240 (393)
T d1g8ma2 161 GGYCVLQMDPNYEPDDNEIRTLYGLQLMQKRNNAVIDRSLFKNIVTKNKTLPESAVRDLIVASIAVKYTQSNSVCYAKDG 240 (393)
T ss_dssp GTCEEEEECTTCCCCSEEEEEETTEEEEEECCCCCCSGGGGCCBCSSSCCCCHHHHHHHHHHHHHHHTSCSSCEEEEETT
T ss_pred CCHHHHCCCCCCCCCCCCEEEEECCEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 21343024644577666367750531110123332455551343202345168899999999999862366458996298
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~tvGIGaGQ~SRVdsv~iA~~KA~~~~~r~~p~v~~~~~k~~~~~~e~~na~~~~~~~~~~~~e~~~~~~~~f~~~~~~l 320 (393)
T d1g8ma2 241 QVIGIGAGQQSRIHCTRLAGDKANSWWLRHHPRVLSMKFKAGVKRAEVSNAIDQYVTGTIGEDEDLVKWQAMFEEVPAQL 320 (393)
T ss_dssp EEEEEECSCSCHHHHHHHHHHHHHHHHHTTCHHHHTCEECTTCCHHHHHHHHHHHHHTCSCSTHHHHHHHTTEEECCCCC
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHH
T ss_conf 68831899765478999999999887764063011000000134555541677651354332035566655420143112
Q ss_pred ------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------9
Q 000711 482 ------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~~~~~~~~g~vlASDAFFPF~D~ie~aa~~Gv~aIiQPGGSirD~evI~aan~~~i~M~fTg~RhF~H 393 (393)
T d1g8ma2 321 TEAEKKQWIAKLTAVSLSSDAFFPFRDNVDRAKRIGVQFIVAPSGSAADEVVIEACNELGITLIHTNLRLFHH 393 (393)
T ss_dssp CHHHHHHHHTTCCCEEEEESSCCSSTHHHHHHHTTTEEEEEEECCCTTHHHHHHHHHHHTCEEEEESCCCCCC
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHCCEEEECCCCCCCC
T ss_conf 3788764430357857980268687568999998599399879874251999999998598899878867288
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=29623.60 Aligned_cols=1 Identities=0% Similarity=-0.227 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~H~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (393)
T d1sq9a_ 1 KVFIATANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC 80 (393)
T ss_dssp CEEEEEEEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE
T ss_pred CCEEEEEECCCCCCCCCEEEEEECCEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCC
T ss_conf 91582452087636712799996999999979996998789878877654046765420477167666750015799876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~ 160 (393)
T d1sq9a_ 81 LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES 160 (393)
T ss_dssp EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred EEEEEECCCCEEEEECCCCCCEEEEECCCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEECCCCCC
T ss_conf 89999489919999822898205651245632431157896689998447886542179998389819998740477534
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 240 (393)
T d1sq9a_ 161 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 240 (393)
T ss_dssp HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred CEEEEEECCCEECCCCEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCC
T ss_conf 10233103200014510002578986789997899989999389829998602332110000111112425638770046
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 pdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~ 320 (393)
T d1sq9a_ 241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 320 (393)
T ss_dssp SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred CCCCEEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCCCEEEEEECCC
T ss_conf 65320112428988421001035321344431156666431023202358666001389888069877999899999999
Q ss_pred ------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------9
Q 000711 482 ------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~~~g 393 (393)
T d1sq9a_ 321 KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 393 (393)
T ss_dssp TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred CCEEEEECCCCCCCCCCCCEEEECCCCCEEEECCCCEEEECCCCCEECCCCCCCCEEEEEECCCEEEEEECCC
T ss_conf 9799999886876137734899999999999831246998866766312368899799999199089990899
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=0 Score=29626.25 Aligned_cols=1 Identities=100% Similarity=2.696 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
|
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~ 80 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDFE 80 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHH
T ss_conf 99899989984899999999997859899994677542211012111343321577887777622797079983078999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~~~~~~~~ 160 (393)
T d1i24a_ 81 FLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGY 160 (393)
T ss_dssp HHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSSCBCSSE
T ss_pred HHHHHHHHHCCHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCC
T ss_conf 99999975110120012342101232222222222333223354078999998431242011012111223356643233
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~i 240 (393)
T d1i24a_ 161 ITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTAL 240 (393)
T ss_dssp EEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTCCHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 32222235555542135455777775310012111223310233310123112777654555542223555445655300
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~i~g~~~~~rd~v~v~D~~~a~~~~~~~~~~~g~~~~~~~~~~~~si~el~~~i~~~~~~~~~~~~~ 320 (393)
T d1i24a_ 241 NRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVNELASLVTKAGSKLGLDVKK 320 (393)
T ss_dssp HHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCCCTTCEEEEEECSEEEEHHHHHHHHHHHHHTTTCCCCE
T ss_pred HHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHCCCCCE
T ss_conf 15667764497268852012223455333337789998874034330466437898067999999999998761987524
Q ss_pred ------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------9
Q 000711 482 ------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------------------------------s 482 (1338)
.
T Consensus 321 ~~~~~~~~~~~~~~~~~d~~k~~~LGw~P~~~~~~~i~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (393)
T d1i24a_ 321 MTVPNPRVEAEEHYYNAKHTKLMELGLEPHYLSDSLLDSLLNFAVQFKDRVDTKQIMPSVSWKKIGVKTKSMT 393 (393)
T ss_dssp EEECCSSCSCSSCCCCBCCCHHHHTTCCCCCCCHHHHHHHHHHHHHTGGGCCGGGSSCCCCTTTCCSSCCCC-
T ss_pred EECCCCCCCCCCCEECCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCC
T ss_conf 5646899889866763789999974994056999999999999999887501764588888750011224669
|
| >d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=0 Score=29623.06 Aligned_cols=1 Identities=0% Similarity=0.338 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
.
T Consensus 1 ~~~~~~~~~~~f~w~~~~~~~~~~~i~~kLdyLk~LGv~aI~L~Pi~~~~~~~~~GY~~~d~y~~~~~~~~~~vd~~~Gt 80 (393)
T d1hvxa2 1 AAPFNGTMMQYFEWYLPDDGTLWTKVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEFNQKGAVRTKYGT 80 (393)
T ss_dssp CCCCCCCEEECCCTTCCSSSCHHHHHHHHHHHHHHTTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCC
T ss_pred CCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98988648996750668889709999997899997499989979888688889989886676555545556776878899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~df~~LV~~aH~~GIkVIlDvV~NHt~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (393)
T d1hvxa2 81 KAQYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVNPSDRNQEISGTYQIQAWTKFDFPGRGNTYSSFKWRWYH 160 (393)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGG
T ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999999987998999984355446677542110134764334455787444455556777777778776655555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~l~~~~~~w~~~~giDGfR~D~a~~i~ 240 (393)
T d1hvxa2 161 FDGVDWDESRKLSRIYKFRGIGKAWDWEVDTENGNYDYLMYADLDMDHPEVVTELKSWGKWYVNTTNIDGFRLDAVKHIK 240 (393)
T ss_dssp EEEEEEETTTTEEEEEEECSTTCCCCSSCCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 78776556677676433268757556555554300101453300557737777788899998876388615642245578
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~f~~~~~~~~~~~~~~~~~~~gE~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (393)
T d1hvxa2 241 FSFFPDWLSYVRSQTGKPLFTVGEYWSYDINKLHNYIMKTNGTMSLFDAPLHNKFYTASKSGGTFDMRTLMTNTLMKDQP 320 (393)
T ss_dssp TTHHHHHHHHHHHHHCCCCEEEECCCCSCHHHHHHHHHHTTTCSEEECHHHHHHHHHHHHTTTCSCGGGTTTTCHHHHCG
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
T ss_conf 66799999999874477623551002763777777764045655003089999999987038779999999753423784
Q ss_pred ------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------9
Q 000711 482 ------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~v~fl~NHD~~r~~~~~~~~~~~~~~~a~a~~l~~~pGiP~iyyGdE~G~~~~~~p~~~~~i~~~~~~rk~ 393 (393)
T d1hvxa2 321 TLAVTFVDNHDTEPGQALQSWVDPWFKPLAYAFILTRQEGYPCVFYGDYYGIPQYNIPSLKSKIDPLLIARRD 393 (393)
T ss_dssp GGEEEESCCTTTSTTSTTCCCCCTTTHHHHHHHHHHSSSSEEEEEHHHHHCBGGGTBCCCHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 3186877578785513444587999999999999982899389883672299996999707786999997179
|
| >d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]
Probab=100.00 E-value=0 Score=29622.85 Aligned_cols=1 Identities=0% Similarity=-1.025 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~f~w~~~~~gg~~~gi~~kLdylk~LGvtaI~L~Pi~~~~~~~~~gy~~~~~Y~~~~~~~~~~vd~~~Gt~~d 80 (393)
T d1e43a2 1 VNGTLMQYFEWYTPNDGQHWKRLQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGTVRTKYGTKSE 80 (393)
T ss_dssp CCCCEEECCCTTCCSSSCHHHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHHH
T ss_pred CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 97617886766778889899999997899997599989969572689888999786567665434456766888999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 f~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (393)
T d1e43a2 81 LQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANRNQETSEEYQIKAWTDFRFPGRGNTYSDFKWHWYHFDG 160 (393)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGGEEE
T ss_pred HHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999986998999870025557775444442235741113566654555344555667778877666555444788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdln~~np~v~~~~~~~~~~w~~~~GiDGfR~Da~~~~~~~f 240 (393)
T d1e43a2 161 ADWDESRKISRIFKFRGEGKAWDWEVSSENGNYDYLMYADVDYDHPDVVAETKKWGIWYANELSLDGFRIDAAKHIKFSF 240 (393)
T ss_dssp ESCBTTTTBCCEEEECSSSCCCCSSSCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHTCCEEEETTGGGSCHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
T ss_conf 87666677677322157645555556555540202332311437714567799998766543486537861345689799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~gE~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~ 320 (393)
T d1e43a2 241 LRDWVQAVRQATGKEMFTVAEYWQNNAGKLENYLNKTSFNQSVFDVPLHFNLQAASSQGGGYDMRKLLNGTVVSKHPLKS 320 (393)
T ss_dssp HHHHHHHHHHHHCSCCEEEECCCCSCHHHHHHHHHHTTTCSEEECHHHHHHHHHHHHTTTCSCGGGTTTTCSTTTCGGGE
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCE
T ss_conf 99999999874286057766533773776641222044430454117799999877216648899998515111680402
Q ss_pred ------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------9
Q 000711 482 ------------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 v~fl~nHD~~R~~~~~~~~~~~~~~la~a~ll~~~pG~P~IyyGdE~G~~g~~~~~~~~~~~~i~~l~~~rk~ 393 (393)
T d1e43a2 321 VTFVDNHDTQPGQSLESTVQTWFKPLAYAFILTRESGYPQVFYGDMYGTKGDSQREIPALKHKIEPILKARKQ 393 (393)
T ss_dssp EEESCCTTTSTTSTTCCCCCTTTHHHHHHHHHHSSSSEEEEEHHHHHCCCCSSTTCCCCCHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 5755178773413356763479999999999982899479871573299998998867789999999998684
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=0 Score=29560.88 Aligned_cols=1 Identities=0% Similarity=-1.091 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~g~~T~~vH~G~~~~~~~g~v~pPI~~ssT~~f~~~~~~~~~~~~~~~~~~Y~R~~nPT~~~LE~~la~LEg~~~a~~~ 80 (392)
T d1gc0a_ 1 LPGFATRAIHHGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLAL 80 (392)
T ss_dssp CCCHHHHHHHTTCCGGGGTTBSSCCBCCCSCBCCC---------------------CCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCCCCHHCEECCCCCCCCCCCEECCCCCCCCEEECCHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCEEEH
T ss_conf 94812020548988877899950882288887518889999862688688523289886899999999998399511101
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~~d~~~~~~ai~~~t~lv~~Esp~NP~l~v 160 (392)
T d1gc0a_ 81 ASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHM 160 (392)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTTEEEEEEESSCTTTCCC
T ss_pred HHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCEEEE
T ss_conf 44789999998752369980001211110145564321024774224578667999998478787599964666321354
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~Di~~i~~ia~~~g~~~vvDnT~atP~~~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G~~ 240 (392)
T d1gc0a_ 161 ADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAV 240 (392)
T ss_dssp CCHHHHHHHHGGGTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCC
T ss_pred CCHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHCCCEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 24399999998459879983672574505867848988998665203598554431024306789898899999703886
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~p~da~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~gg~~sf~l~~~~~~~~ 320 (392)
T d1gc0a_ 241 LSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGR 320 (392)
T ss_dssp CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTHHHHHH
T ss_pred CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHH
T ss_conf 88045799982206089999999999999999997399865786524458865332133456778379999959999999
Q ss_pred -----------------------------------------------------------------------C
Q ss_conf -----------------------------------------------------------------------9
Q 000711 482 -----------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------------------------------------s 482 (1338)
+
T Consensus 321 ~f~~~L~l~~~a~SlGg~eSLi~~pa~~th~~~~~e~r~~~Gi~~~liRlSVGlEd~eDLi~Dl~~AL~aa~ 392 (392)
T d1gc0a_ 321 RFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKASA 392 (392)
T ss_dssp HHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCCEEEECCCCCCHHHCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHC
T ss_conf 999858846671246876850108622264228999999759792969998601899999999999999629
|
| >d2d0ta1 a.266.1.2 (A:12-403) Indoleamine 2,3-dioxygenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Indolic compounds 2,3-dioxygenase-like superfamily: Indolic compounds 2,3-dioxygenase-like family: Indoleamine 2,3-dioxygenase-like domain: Indoleamine 2,3-dioxygenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=29554.06 Aligned_cols=1 Identities=0% Similarity=0.272 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~f~vs~~~GFLp~~Pl~~LP~~y~~w~~i~~~lp~Ll~~~~lr~~V~~LP~l~~~~l~~~~~~r~a~~~lsfla~aYi 80 (392)
T d2d0ta1 1 SKEYHIDEEVGFALPNPQENLPDFYNDWMFIAKHLPDLIESGQLRERVEKLNMLSIDHLTDHKSQRLARLVLGCITMAYV 80 (392)
T ss_dssp CCSSSCBTTTBTSCSSCCCCCCGGGHHHHHHHHTHHHHHHTTCHHHHHHHCCCCCSTTCCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 97334087768899984565786327999999987887755809999984786784433896999999999999999997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 w~~~~~~~~~~LP~~Ia~Pl~~vs~~Lg~pP~ltYa~~~L~Nw~~~dp~~~~~~dNl~~i~~F~g~~dE~~F~lv~v~iE 160 (392)
T d2d0ta1 81 WGKGHGDVRKVLPRNIAVPYCQLSKKLELPPILVYADCVLANWKKKDPNKPLTYENMDVLFSFRDGDCSKGFFLVSLLVE 160 (392)
T ss_dssp HTTSSSCCCSEECHHHHHHHHHHHHHHTCCSSCCHHHHTTSSEEESSTTSCSCGGGEEESCCSSTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 07899977778987888999999997499986516556310310058778887330556402789974135789879999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~l~~~~~~~~a~~~~d~~~~~~~l~~i~~~i~~i~~~~~~m~e~~~p~~fy~~~R~fi~G~k~~~~~p~GviYeg 240 (392)
T d2d0ta1 161 IAAASAIKVIPTVFKAMQMQERDTLLKALLEIASCLEKALQVFHQIHDHVNPKAFFSVLRIYLSGWKGNPQLSDGLVYEG 240 (392)
T ss_dssp HHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTHHHHCCHHHHHHTHHHHTCCBSSCGGGTTCBEETT
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCEEEEEEEECCCCCCCCCCEECC
T ss_conf 86446999999999998767758799999999999999999998502029855621423545322437776888730036
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~p~~~~G~SgaQSsii~~lD~~LGv~h~~~~~~l~~~L~~mR~YmP~~HR~Fl~~l~~~~~ir~~v~~~~~~~L~~a 320 (392)
T d2d0ta1 241 FWEDPKEFAGGSAGQSSVFQCFDVLLGIQQTAGGGHAAQFLQDMRRYMPPAHRNFLCSLESNPSVREFVLSKGDAGLREA 320 (392)
T ss_dssp TCSSCBCBCCCCGGGCHHHHHHHHHTTCCSSCSSSHHHHHHHHHGGGSCHHHHHHHHHHHTSCCHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHH
T ss_conf 77776426788766664089999995785668875088999999985739999999999840436788870588899999
Q ss_pred -----------------------------------------------------------------------C
Q ss_conf -----------------------------------------------------------------------9
Q 000711 482 -----------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 y~~~v~~l~~FR~~H~~~v~~YIi~~~~~~~~~~~~~~~~~~~~~~gTGGT~~~~fLk~~rd~t~~~~~~~~ 392 (392)
T d2d0ta1 321 YDACVKALVSLRSYHLQIVTKYILIPASQQPKENKTSEDPSKLEAKGTGGTDLMNFLKTVRSTTEKSLLKEG 392 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHTC-------------------CTHHHHHHHHHHHHHHHHTCSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999999999999999999886641223678888888888217885488999997767887761389
|
| >d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: APH phosphotransferases domain: Methylthioribose kinase MtnK species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=29551.37 Aligned_cols=1 Identities=0% Similarity=-0.327 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~e~Lt~~~~~~la~~lg~~~~~~~l~~~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E 80 (392)
T d2pula1 1 KTPLYETLNESSAVALAVKLGLFPSKSTLTCQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIE 80 (392)
T ss_dssp CCCCCCCCCHHHHHHHHHHTTC-----CCEEEECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCEEEEEECCCCHHCCCCCCCCCCHHHHHHH
T ss_conf 99877269989999999984998988873699807985276899995799848999617713034677788877899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~L~~~~~~~p~~vP~v~~~d~~~~~lvmE~L~~~~~~~~~l~~~~~~~~~a~~lg~~La~~h~~~~~~~~~~~~~~~~ 160 (392)
T d2pula1 81 SSALIRQGEHVPHLVPRVFYSDTEMAVTVMEDLSHLKIARKGLIEGENYPHLSQHIGEFLGKTLFYSSDYALEPKVKKQL 160 (392)
T ss_dssp HHHHHHHHTTCGGGSCCEEEEETTTTEEEECCCTTSEEHHHHHHHTCCCTTHHHHHHHHHHHHHHHTSTTTSCHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCC
T ss_conf 99999865057988552899859887798713577653022201542128999999999999998735033442111012
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~n~~l~~~~e~~~~~~py~~~~~~~~~~~~~~~~~~l~~d~~l~~~~~~l~~~~~~~~~~LiHGDl~~gNIlv~~~ 240 (392)
T d2pula1 161 VKQFTNPELCDITERLVFTDPFFDHDTNDFEEELRPFVEKLWNNDSVKIEAAKLKKSFLTSAETLIHGDLHTGSIFASEH 240 (392)
T ss_dssp HHHTCCHHHHHHHHHHTTTGGGTTCTTCCCCGGGHHHHHHHHTCHHHHHHHHHHHHHHHHBCCEEECSCCCGGGEEECSS
T ss_pred CCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCEEECCC
T ss_conf 33446578887777640104788988741065455778765520789999999874323688600335776784667599
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~vID~E~a~~G~~~~Dlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~ 320 (392)
T d2pula1 241 ETKVIDPEFAFYGPIGFDVGQFIANLFLNALSRDGADREPLYEHVNQVWETFEETFSEAWQKDSLDVYANIDGYLTDTLS 320 (392)
T ss_dssp CEEECCCTTCEEECTHHHHHHHHHHHHHHHHHSCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTTSTTHHHHHHH
T ss_pred CEEEECHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 30895226522287899999999999999740663034568999999999999999999876165500034899999999
Q ss_pred -----------------------------------------------------------------------C
Q ss_conf -----------------------------------------------------------------------9
Q 000711 482 -----------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~d~~~~~g~~~~rr~~g~a~~~d~~~i~~~~~r~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 392 (392)
T d2pula1 321 HIFEEAIGFAGCELIRRTIGLAHVADLDTIVPFDKRIGRKRLALETGTAFIEKRSEFKTITDVIELFKLLVK 392 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCCHHHHTCSSHHHHHHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 999999998889999987341444421315798889999999999999999615512999999999999709
|
| >d1xima_ c.1.15.3 (A:) D-xylose isomerase {Actinoplanes missouriensis [TaxId: 1866]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: Xylose isomerase domain: D-xylose isomerase species: Actinoplanes missouriensis [TaxId: 1866]
Probab=100.00 E-value=0 Score=29551.03 Aligned_cols=1 Identities=0% Similarity=-1.157 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~kfs~g~Wt~~~~g~d~FG~~tr~~~~~~e~~~~l~~lG~~g~~fHd~dl~P~~~~~~~~~~~~~~~k~~l~~t 80 (392)
T d1xima_ 1 VQATREDKFSFGLWTVGWQARDAFGDATRTALDPVEAVHKLAEIGAYGITFHDDDLVPFGSDAQTRDGIIAGFKKALDET 80 (392)
T ss_dssp CCCCGGGCEEEEHHHHTCCCCBTTBCCSSCCCCHHHHHHHHHHHTCSEEECBHHHHSCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 99986673579960366768799998877754799999999985998686067877888998788999999999999863
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 Gl~~~~~t~nlf~~p~f~~Ga~TsPD~~vR~~Ai~~~k~aID~aaeLGa~~~v~W~G~~G~~~~~~~d~~~~~~~~~e~l 160 (392)
T d1xima_ 81 GLIVPMVTTNLFTHPVFKDGGFTSNDRSVRRYAIRKVLRQMDLGAELGAKTLVLWGGREGAEYDSAKDVSAALDRYREAL 160 (392)
T ss_dssp TCBCCEEECCCSSSGGGTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCCEEEEECTTSEESSGGGCCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 98234663342447143158877939999999999999999999995898379637877667876558999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~v~dya~d~g~gv~~~IEpKP~EP~~~~~i~d~~~al~~i~~vg~p~~vgvnlD~gH~~~ag~~~~~~ia~a~~~gkL~ 240 (392)
T d1xima_ 161 NLLAQYSEDRGYGLRFAIEPKPNEPRGDILLPTAGHAIAFVQELERPELFGINPETGHEQMSNLNFTQGIAQALWHKKLF 240 (392)
T ss_dssp HHHHHHHHHHTCCCEEEEECCSSSSSSEESSCSHHHHHHHHTTSSSGGGEEECCBHHHHHTTTCCHHHHHHHHHHHTCBC
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHCCCCCCEEEECCHHHHHHCCCCHHHHHHHHHHCCCEE
T ss_conf 99999887508885598603778887543407799999999971990036674113245433798579999998659789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 hvHlND~~~~~~D~DL~~Gs~~~~~~~~l~~~l~~g~~g~~~~~G~~~fD~~~~r~~~~~~~~~~~~~~~~~~~~l~~~a 320 (392)
T d1xima_ 241 HIDLNGQHGPKFDQDLVFGHGDLLNAFSLVDLLENGPDGAPAYDGPRHFDYKPSRTEDYDGVWESAKANIRMYLLLKERA 320 (392)
T ss_dssp CCEECBCCSSSSCCCBCTTSSSHHHHHHHHHHHHSCGGGSCSCCSCEEECCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99748998989888988898788899999999984777776777875402587677871069999999999999999999
Q ss_pred -----------------------------------------------------------------------C
Q ss_conf -----------------------------------------------------------------------9
Q 000711 482 -----------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~l~~d~~~~~al~a~~~~~~~~~tl~~~~~~~~~~a~~~~~~~~~~~~~~~rg~~~~~l~q~~~~~l~~~~ 392 (392)
T d1xima_ 321 KAFRADPEVQEALAASKVAELKTPTLNPGEGYAELLADRSAFEDYDADAVGAKGFGFVKLNQLAIEHLLGAR 392 (392)
T ss_dssp HHHHHCHHHHHHHHHTTSGGGGSCSSCTTCCHHHHHHCGGGTTTCCHHHHHTSCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCC
T ss_conf 998778788999998665663376556564468998767533346877786534369999999999972689
|
| >d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: PIWI domain domain: Argonaute homologue Aq 1447 species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=0 Score=29549.00 Aligned_cols=1 Identities=0% Similarity=-1.058 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~f~~~l~~~~~~~G~~~~~~~~~~ 80 (392)
T d1yvua2 1 KLNFKDTVLDAKGKNTKVITNLRKFLELCRPFVKKDVLSVEIISVSVYKKLEWRKEEFLKELINFLKNKGIKLKIKGKSL 80 (392)
T ss_dssp ECCCCCCEECSSCCEECCSSCCHHHHHHCCCCCSCSEEEEEEEEEEC-----CHHHHHHHHHHHHHHTTTCEEEEEEEEE
T ss_pred CCCCHHHEECCCCCCCEEEECCEEHHHHCCCCCCCCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCEECCCCCCE
T ss_conf 92110210135899742223320224324732356634424789999631066799999999999986292645788671
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~Y~~IK~~~~~~gIptQ~i~~~tl~~~~~~~~~~NIa 160 (392)
T d1yvua2 81 ILAQTREEAKEKLIPVINKIKDVDLVIVFLEEYPKVDPYKSFLLYDFVKRELLKKMIPSQVILNRTLKNENLKFVLLNVA 160 (392)
T ss_dssp EECSSTTHHHHHHHHHHTTTSSCSEEEEEEC----------CHHHHHHHHHHHHTTCCCEEEEHHHHHHSCHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEECHHHCCCCCCHHHHHHHH
T ss_conf 31277511599999998402677789999768888665554047999999985499664898866616898358999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 lqinaKlGGipw~l~~~~~~~tmiIGiDv~h~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~ee~~~~~~~~~l~~ 240 (392)
T d1yvua2 161 EQVLAKTGNIPYKLKEIEGKVDAFVGIDISRITRDGKTVNAVAFTKIFNSKGELVRYYLTSYPAFGEKLTEKAIGDVFSL 240 (392)
T ss_dssp HHHHHHTTCCSCEESCCTTCCSEEEEECEEECCCSSSCCCEEEEEEEECTTSCEEEEEEEEECSCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCEECCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 99999849834688788999759999998715888984638999999868997789998854776078999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~P~rIIi~RdG~~~~~El~~i~~a~~~~~pki~~IvV~Krh~~Rff~~~~~~~Gt~v~~~~~~~~~~~s~~~~ 320 (392)
T d1yvua2 241 LEKLGFKKGSKIVVHRDGRLYRDEVAAFKKYGELYGYSLELLEIIKRNNPRFFSNEKFIKGYFYKLSEDSVILATYNQVY 320 (392)
T ss_dssp HHHTTCCTTCEEEEEESSCCCHHHHHHHHHHHHHHTCEEEEEEEECSSCCCEECSCSCCTTEEEEBSSSEEEECCSCCCS
T ss_pred HHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCEEECCCCCCCCCCEEECCCCEEEEEECCCCC
T ss_conf 99964999866999958877379999999999864995899999815882656789999998771798929999768857
Q ss_pred -----------------------------------------------------------------------C
Q ss_conf -----------------------------------------------------------------------9
Q 000711 482 -----------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 qGT~rP~~Y~vl~d~~~~d~l~~lt~~Lc~l~~~~t~svslPapi~YA~~lA~~~r~~~~p~~~~~~~~~~l 392 (392)
T d1yvua2 321 EGTHQPIKVRKVYGELPVEVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLMLRGIEPIKKEGDIMYWL 392 (392)
T ss_dssp TTCCCCEEEEEEECSSCHHHHHHHHHHGGGGGCCSSSCCCSCTTTTTHHHHHHHHHTCSSCCEEEESCCTTC
T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 877788589998898998999999999775126718998007799999999999751178654575524219
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29478.91 Aligned_cols=1 Identities=0% Similarity=-0.692 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 k~~T~~vh~g~~~~~~~g~v~pPi~~sst~~f~~~~~~~~~~~~~~~~~~~Y~R~~nPt~~~le~~la~LEg~~~a~~~~ 80 (391)
T d1cl1a_ 1 KLDTQLVNAGRSKKYTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFP 80 (391)
T ss_dssp CHHHHHHHTTCCHHHHTTBSSCCBCCCSCBCCSSHHHHHHHHHTTTTTCCCCTTTCCHHHHHHHHHHHHHHTCSEEEEES
T ss_pred CCCCCEECCCCCCCCCCCCCCCCEECCCCEEECCHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 91400360898999889984498548885362898999987527766866767899865999999999981995279851
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~~d~~~~~~~i~~~t~~i~~EtpsNP~l~v~ 160 (391)
T d1cl1a_ 81 CGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVH 160 (391)
T ss_dssp SHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTTCGGGGGGTCCTTEEEEEEESSCTTTCCCC
T ss_pred CCCCEEEEHHHCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC
T ss_conf 50001110222046778769983355520133322011233333200267311122233345553355303576532112
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 Di~~i~~~a~~~~~g~~~vVDnT~atP~~~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~~~G~~~ 240 (391)
T d1cl1a_ 161 DVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMV 240 (391)
T ss_dssp CHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCCCCCEEEEECCHHCCCCCCCCCCCEECCCCCCCCCHHHHHCCCCCC
T ss_conf 32789998874157827998534332322111353340677623100036653334420003543210001111001357
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~p~~a~ll~rgl~TL~lR~~~~~~nA~~vA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~e~~ 320 (391)
T d1cl1a_ 241 DADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEEL 320 (391)
T ss_dssp CHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHH
T ss_pred CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCHHHH
T ss_conf 85120244435316788999999999999988874465433333222204568988630589876402453388899999
Q ss_pred ----------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------9
Q 000711 482 ----------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~f~d~L~l~~~a~SlG~~~SLi~~~~~~~~~~~~~~~~~gi~~~liRlSVGlEd~eDLi~Dl~~AL~~i~ 391 (391)
T d1cl1a_ 321 ANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFARIV 391 (391)
T ss_dssp HHHHTTCSSCBCCSCCCSSSCEEEEECHHHHHHTSTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCCCCEEEECCCCCCCCEECCCCCCCCCCCCHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf 99997499265856778876533478222343579247659996979999561999999999999999669
|
| >d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: TDP-epi-vancosaminyltransferase GtfA species: Amycolatopsis orientalis [TaxId: 31958]
Probab=100.00 E-value=0 Score=29473.43 Aligned_cols=1 Identities=0% Similarity=-1.125 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 mril~~~~gt~Ghi~P~laLA~~L~~rGh~V~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (391)
T d1pn3a_ 1 MRVLITGCGSRGDTEPLVALAARLRELGADARMCLPPDYVERCAEVGVPMVPVGRAVRAGAREPGELPPGAAEVVTEVVA 80 (391)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCCEEECSSCSSGGGSCTTCCCTTCGGGHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHCCCEEEECCCCHHHHHHCHHHHHHHHHHHHHHHHH
T ss_conf 97999858873689999999999998899899997803676898779848987836877734856666999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~l~~~~~~~D~vi~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (391)
T d1pn3a_ 81 EWFDKVPAAIEGCDAVVTTGLLPAAVAVRSMAEKLGIPYRYTVLSPDHLPSEQSQAERDMYNQGADRLFGDAVNSHRASI 160 (391)
T ss_dssp HHHHHHHHHHTTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSGGGSCHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999730798478734471378999999980876488531224455312220056788999888778899999874
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 240 (391)
T d1pn3a_ 161 GLPPVEHLYDYGYTDQPWLAADPVLSPLRPTDLGTVQTGAWILPDERPLSAELEAFLAAGSTPVYVGFGSSSRPATADAA 240 (391)
T ss_dssp SCCCCCCHHHHHHCSSCEECSCTTTSCCCTTCCSCCBCCCCCCCCCCCCCHHHHHHTTSSSCCEEEECTTCCSTHHHHHH
T ss_pred CCCCCCCCCCCCCCCCEEECCCHHHHCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCHHHHH
T ss_conf 37663200024566640231542431157777771565686567655677888642115897278722431223278999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~p~~~ll~~a~~~v~hgG~~t~~Eal~~G~P~v~~P~~~d~~~ 320 (391)
T d1pn3a_ 241 KMAIKAVRASGRRIVLSRGWADLVLPDDGADCFVVGEVNLQELFGRVAAAIHHDSAGTTLLAMRAGIPQIVVRRVVDNVV 320 (391)
T ss_dssp HHHHHHHHHTTCCEEEECTTTTCCCSSCCTTCCEESSCCHHHHHTTSSCEEEESCHHHHHHHHHHTCCEEEECSSCCBTT
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCCCHHHHHHHCCEEEECCCHHHHHHHHHHCCCEEEECCCCCCCC
T ss_conf 99999998569779994364333445688988995446879998425489852743799999982886899335567745
Q ss_pred ----------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------9
Q 000711 482 ----------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 eQ~~nA~~l~~~G~g~~l~~~~~~~~~l~~~i~~~l~~~~r~~a~~~a~~~~~~g~~~aa~~i~~~l~~~~ 391 (391)
T d1pn3a_ 321 EQAYHADRVAELGVGVAVDGPVPTIDSLSAALDTALAPEIRARATTVADTIRADGTTVAAQLLFDAVSLEK 391 (391)
T ss_dssp BCCHHHHHHHHHTSEEEECCSSCCHHHHHHHHHHHTSTTHHHHHHHHGGGSCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 29999999998798897685789999999999998399999999999999885279999999999987459
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=100.00 E-value=0 Score=29473.04 Aligned_cols=1 Identities=0% Similarity=-0.958 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~~~~~~~~p~~~~~~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~~~~~~~~~~~p~~~~~~~~~~ 80 (391)
T d1gpea1 1 YLPAQQIDVQSSLLSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTT 80 (391)
T ss_dssp CCCCCCCCCGGGSBCCGGGTTTCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCCTTSCHHHHCGGGTTTTTTST
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEECHHHHHHHHCCC
T ss_conf 98600145554112791212699664999896789999999998787982999837889888873040888998860897
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~dw~~~t~p~~~~r~~~~~~G~~lGGsS~in~~~~~rg~~~d~~~w~~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~~ 160 (391)
T d1gpea1 81 VDQNYLTVPLINNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAA 160 (391)
T ss_dssp TBCCEECCCCTTSCCCEECCBCSTTGGGGTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCCCHHHHHH
T ss_pred CCCCCEEEECCCCCEEEECEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHCCC
T ss_conf 66683413567995741121112576551430378603522334410037998644320378888765315886011035
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~r~s~a~~~~~p~ 240 (391)
T d1gpea1 161 GHSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPN 240 (391)
T ss_dssp TCCCCGGGCCBSSSEEEBCCCCSSCBCTHHHHHHHHHHHTTCCBSCCTTSSCCCEEECCEESBCTTCCBCCHHHHHTTTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHHCCCCC
T ss_conf 66766445678886432445565545789999999887548721201225765432222211320333442122025763
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~r~nl~i~t~a~V~rIl~~~~~~g~ra~GV~~~~~~g~~~~v~A~keVILaAGai~SP~LLl~SGIGp~~~L~~~gI~~ 320 (391)
T d1gpea1 241 YQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQ 320 (391)
T ss_dssp TTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTEECHHHHHHTTCCC
T ss_pred CCCHHHHHHCCCEEEEEEEECCCCCCEEEEEEEECCCCEEEEEEECCEEEEECCHHCCHHHHHHCCCCCHHHHHHCCCCE
T ss_conf 22013443305325688650788874688658833897278998488799926120466899866797388998779988
Q ss_pred ----------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------9
Q 000711 482 ----------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------------------------------------s 482 (1338)
+
T Consensus 321 v~dlP~Gvg~nl~dh~~~~v~~~~~v~~~~~l~~~~~s~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (391)
T d1gpea1 321 LLDLPVGICSMMSRELGGVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADAILDDYAKSA 391 (391)
T ss_dssp SEECCTTCTCBSCGGGTCSBCTTCBBTTCBSEEECSTTCCSSCCSSCSHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEECCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99897541215346766555034345477774331245686220432234443557666689998761249
|
| >d1nt4a_ c.60.1.2 (A:) Glucose-1-phosphatase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate mutase-like superfamily: Phosphoglycerate mutase-like family: Histidine acid phosphatase domain: Glucose-1-phosphatase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29471.38 Aligned_cols=1 Identities=0% Similarity=-0.294 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~vP~g~~L~~V~vl~RHG~R~P~~~~~~~~~~~~~~~~~~~~~~~g~LT~~G~~q~~~lG~~lr~~Y~~~~~l~~~~~~ 80 (391)
T d1nt4a_ 1 QTVPEGYQLQQVLMMSRANLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGMVKSGECP 80 (391)
T ss_dssp CCCCTTEEEEEEEEEECCCCBCCCGGGHHHHHHTCSSCCCCCSSCTTCBCHHHHHHHHHHHHHHHHHHHHTTSSCSSSCC
T ss_pred CCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99899998849999973867999988775313477344778999856110889999999999999998760677787778
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~v~vrst~~~Rt~~SA~afl~Gl~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (391)
T d1nt4a_ 81 PPYTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYQ 160 (391)
T ss_dssp CTTSEEEEECSSHHHHHHHHHHHHHHSTTSCCCEECCSCCSSCCTTTCCCCCCCCSHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 70005886178719999999999972788777756443457777666775456652106788787764310243139999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (391)
T d1nt4a_ 161 LLEKIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVL 240 (391)
T ss_dssp HHHHHHTGGGSTTTTTTCCCCTTTCCCEEECCTTSCCEEESHHHHHHHHHHHHHHHHHTTCCTTTGGGGTSCSTTHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 99997633022144555555688888888875324766675077776599999999984899997434676769999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~i~~~~~~~~~~~~k~~l~s~HD~ti~~~l~aLgl~~~~~p~~~~~~p~~s~~ 320 (391)
T d1nt4a_ 241 SKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTDRTSAPKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKI 320 (391)
T ss_dssp HHHHHHHHHHHHCSHHHHHHHTHHHHHHHHHHTTTTTTTSCSEEEEECCHHHHHHHHHHTTBCCCCCTTCSSSSCTTCEE
T ss_pred HHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEE
T ss_conf 99999999986287688764022899999999873589886279997156689999998389866788877888976638
Q ss_pred ----------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------9
Q 000711 482 ----------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~fEl~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gC~~~~~~lCpl~~F~~~~~~~i~ 391 (391)
T d1nt4a_ 321 VFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQRVTLELSGCPIDADGFCPMDKFDSVLNEAVK 391 (391)
T ss_dssp EEEEEEETTTTEEEEEEEEEECCHHHHHHTCCCCSSSCCEEEECCBTTBCCCTTSCEEHHHHHHHHHHHCC
T ss_pred EEEEEECCCCCCCEEEEEEECCCCHHHCCCCCCCEEECCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 99998617888755999986376132035665430103774156479988999996689999999999739
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29471.17 Aligned_cols=1 Identities=0% Similarity=-0.294 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~iYlD~aa~~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~~I~~~~~~t~~l~~ 80 (391)
T d1p3wa_ 1 KLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNL 80 (391)
T ss_dssp CCSEECBTTTCCCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHH
T ss_conf 97498537422679999999999999864665787316659999999999999999999739997819997988999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~~~~~i~~~T~lv~is~~~n~tG~~~ 160 (391)
T d1p3wa_ 81 AIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQ 160 (391)
T ss_dssp HHHHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCTTEEEEECCSBCTTTCCBC
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCEECHHHHHHHCCCCCEEEEEECCCCCCEEEC
T ss_conf 99642353057998899924654138999999997598899967887872768999975799948999978978881077
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~I~~~~~~~~~~~ivD~~~~~g~~~~d~~~~~~D~~~~s~~k~~g~~g~g~~~~~~~~~~~~~~~~~gg~~~~~~~~ 240 (391)
T d1p3wa_ 161 DIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRS 240 (391)
T ss_dssp CHHHHHHHHHHHTCEEEEECTTTBTTBCCCTTTSCCSEEEEESTTTTSCSSCEEEEECBTTBCCCCCSSCSSCTTTTTSC
T ss_pred CHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEEEECCHHCCCCCCCCCCCCCCCCCC
T ss_conf 78999998555895799730122577564202104653212231005788559999855021156875468856667515
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 320 (391)
T d1p3wa_ 241 GTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVEGESLIMALKDLA 320 (391)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTEEECSCTTTSCTTEEEEEETTSCHHHHHHHTTTEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCEEEEEEECCCCHHHHHHHHCCCE
T ss_conf 74023334453000467887766789999999999999877624806502444567518999857877699999718977
Q ss_pred ----------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------9
Q 000711 482 ----------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 v~~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt~edid~l~~~l~~~l~~lr~~~~~~~~~~~ 391 (391)
T d1p3wa_ 321 VSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDLSPLWEMYKQ 391 (391)
T ss_dssp CBCCCC------CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHSCHHHHHHCC
T ss_pred EECCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHCC
T ss_conf 98262003776540599997399810069889996678899999999999999999999973967786329
|
| >d1lwha2 c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 4-alpha-glucanotransferase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=29469.71 Aligned_cols=1 Identities=0% Similarity=-1.225 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~v~Yei~~~~F~d~~~dg~Gd~~gi~~kLdyl~~LGv~~I~l~Pi~~~~~~~GY~~~d~~~vd~~~Gt~~d~~~lv~~~h 80 (391)
T d1lwha2 1 MIGYQIYVRSFRDGNLDGVGDFRGLKNAVSYLKELGIDFVWLMPVFSSISFHGYDVVDFYSFKAEYGSEREFKEMIEAFH 80 (391)
T ss_dssp CCEEEECGGGTCCSSSSSSCCHHHHHHTHHHHHHTTCSEEEECCCEECSSSSCCSCSEEEEECGGGCCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 97999815610588999860999999855999975999899797987999999785577874712399999999999997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdln~~ 160 (391)
T d1lwha2 81 DSGIKVVLDLPIHHTGFLHTWFQKALKGDPHYRDYYVWANKETDLDERREWDGEKIWHPLEDGRFYRGLFGPFSPDLNYD 160 (391)
T ss_dssp HTTCEEEEEECTTBCCTTSHHHHHHHTTCHHHHTTBCBCCTTCCTTCBCSSSCCBCEEECTTSCEEECTTCTTSCBBCTT
T ss_pred HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 35987844331013334444433223677655664200377545676546788754333677751236668867753433
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 n~~v~~~i~~~~~~w~e~gvDGfR~Daa~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 240 (391)
T d1lwha2 161 NPQVFDEMKRLVLHLLDMGVDGFRFDAAKHMRDTIEQNVRFWKYFLSDLKGIFLAEIWAEARMVDEHGRIFGYMLNFDTS 240 (391)
T ss_dssp SHHHHHHHHHHHHHHHHHTCCEEEETTGGGSSSSHHHHHHHHHHHHTTCCSEEEECCCSCSSSHHHHHHHHEEEECHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCEECCCHH
T ss_conf 41146899998888760699700105588877764211588999998765300255411200011034446731134178
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nhD~~~~~~~~~~~~~~~~~~a~~lllt~pG~P~IyyGdE~G~~~ 320 (391)
T d1lwha2 241 HCIKEAVWKENTRVLIESIERAVIAKDYLPVNFTSNHDMSRLASFEGGFSKEKIKLSISILFTLPGVPLVFYGDELGMKG 320 (391)
T ss_dssp HHHHHHHHHTCTHHHHHHHHHHTSSCSSEEEEESCCTTSCCGGGGGGCCCHHHHHHHHHHHTTSSSEEEEETTGGGTCCC
T ss_pred HHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCHHCCCCC
T ss_conf 89999874034899999998631467765000001555543334123201567999999862689987886143027768
Q ss_pred ----------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------9
Q 000711 482 ----------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~~~~~r~pm~W~~~~~~~~~~~~~~~~~~~~~~~~nve~q~~~~~s~~~~~~~Li~lRk~~~al~r 391 (391)
T d1lwha2 321 VYQKPNTEVVLDPFPWNESMCVEGQTFWKWPAYNGPFSGISVEYQKRDPDSILSHTLGWTRFRKENQWIDR 391 (391)
T ss_dssp CCCSSCGGGGSCCCCSSTTSCSTTCCCSSCCSSCCSSSSCSHHHHTTCTTSHHHHHHHHHHHHHTCGGGGG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHCHHHCC
T ss_conf 98899865311888878777788888887867897423117999875816899999999999813856239
|
| >d4ubpc2 c.1.9.2 (C:132-434,C:484-570) alpha-subunit of urease, catalytic domain {Bacillus pasteurii [TaxId: 1474]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Bacillus pasteurii [TaxId: 1474]
Probab=100.00 E-value=0 Score=29407.65 Aligned_cols=1 Identities=100% Similarity=1.268 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
|
T Consensus 1 GgiDtHvHfi~Pqq~~~al~sGiTT~~GgGtGpa~gt~att~tpG~~~i~~ml~a~d~~P~N~g~~gkGn~s~~~~l~eq 80 (390)
T d4ubpc2 1 GGIDTHVHFINPDQVDVALANGITTLFGGGTGPAEGSKATTVTPGPWNIEKMLKSTEGLPINVGILGKGHGSSIAPIMEQ 80 (390)
T ss_dssp CEEEEEEECCCTTHHHHHHHTTEEEEEEECCSSCHHHHHSSCCCHHHHHHHHHHHHTTCSSEEEEEEECCCSSHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
T ss_conf 98220003348878999985697366468557777878745689888999999865527823115232666986799999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 i~aGa~GlKiHEDwGatpa~id~~L~vad~~dvqv~iHtDtlNE~gfve~T~~a~~gRtiH~~HtEGaGGGHaPDii~~~ 160 (390)
T d4ubpc2 81 IDAGAAGLKIHEDWGATPASIDRSLTVADEADVQVAIHSDTLNEAGFLEDTLRAINGRVIHSFHVEGAGGGHAPDIMAMA 160 (390)
T ss_dssp HHHTCCEEEEEGGGCCCHHHHHHHHHHHHHHTCEEEEECCTTCSSCCHHHHHHHHTTCCEEETTTTSTTSSSTTTGGGGG
T ss_pred HHHHHHEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHC
T ss_conf 98655005013113647789999999864059268985387510101165899867962111467888889883268763
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 g~~nvLpsSTnPT~Pyt~nt~~EhldM~MvcHhL~~~ipeDvafAesRiR~eTiaAEdvLHD~GaiSi~sSDsQaMGRvg 240 (390)
T d4ubpc2 161 GHPNVLPSSTNPTRPFTVNTIDEHLDMLMVCHHLKQNIPEDVAFADSRIRPETIAAEDILHDLGIISMMSTDALAMGRAG 240 (390)
T ss_dssp GSTTEEEBCCSTTSSCBTTHHHHHHHHHHHHHTCCTTSHHHHHHHHHHSCHHHHHHHHHHHHTTSSCBCCCCBTTSSCTT
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCC
T ss_conf 77865578999887886672666367377641479888026777763033012326777652486444136753246400
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 Evi~Rtwq~A~kmk~qrG~l~~d~~~~DN~RvkRYiAKyTINPAIahGish~VGSvE~GKlADG~a~~~tsvtFVSqaAi 320 (390)
T d4ubpc2 241 EMVLRTWQTADKMKKQRGPLAEEKNGSDNFRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADGDLIHDTNITFMSKSSI 320 (390)
T ss_dssp CHHHHHHHHHHHHHHHHCSCTTCCSSCCHHHHHHHHHTTTHHHHHHHTCTTTSSSCCTTSBCCTTHHHHSCEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHH
T ss_conf 67776778898877751489875566777013202530246806750741125764678434876345764899858887
Q ss_pred ---------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------9
Q 000711 482 ---------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------------------------------------s 482 (1338)
=
T Consensus 321 d~Gi~e~LGL~k~l~pVkn~R~ItKkDMk~Nda~P~IeVDPETYeV~aDGelltcePA~~LPLAQRYFLF 390 (390)
T d4ubpc2 321 QQGVPAKLGLKRRIGTVKNCRNIGKKDMKWNDVTTDIDINPETYEVKVDGEVLTCEPVKELPMAQRYFLF 390 (390)
T ss_dssp HTTHHHHHTCCSEEEECCCCSSCCGGGSTTCCCCCCCEECTTTCCEEETTEECCCCCBSCCSSSTTTCCC
T ss_pred HCCCHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCEEECCCCEEEEECCEEECCCCCCCCCCHHCCCCC
T ss_conf 5777677088644886058887786785015789983689986689889999046876756630120177
|
| >d1v6sa_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=29404.12 Aligned_cols=1 Identities=0% Similarity=-1.025 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 mktl~d~~~~~k~Vl~R~D~NvPi~~g~i~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~Sl~~v~~~l~~~ 80 (390)
T d1v6sa_ 1 MRTLLDLDPKGKRVLVRVDYNVPVQDGKVQDETRILESLPTLRHLLAGGASLVLLSHLGRPKGPDPKYSLAPVGEALRAH 80 (390)
T ss_dssp CCBGGGSCCTTCEEEEECCCCCCEETTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCSSCCGGGCSHHHHHHHHHH
T ss_pred CCCHHHCCCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 97412258789999999403777559908976899999999999997899899995589999989761379999999752
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 l~~~v~~~~~~~~~~~~~~~~~l~~g~i~lLENvRF~~~E~~nd~~f~~~La~l~DiyVNDAF~~aHR~haS~vgi~~~l 160 (390)
T d1v6sa_ 81 LPEARFAPFPPGSEEARREAEALRPGEVLLLENVRFEPGEEKNDPELSARYARLGEAFVLDAFGSAHRAHASVVGVARLL 160 (390)
T ss_dssp CTTEEECCSCTTSHHHHHHHHTCCTTCEEECSCGGGSTTTTTTCHHHHHHHGGGCSEEEECCGGGTTSCCCCCCCGGGTS
T ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCEEEEHHHHHCCCCCCCCHHHHHHHHHCCCEEEECCHHHHHHHCCCCCCCHHHH
T ss_conf 46532653101122122222346665378651123245521165277776652476589631466665056622501333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ps~aG~l~ekEi~~L~~~l~~~~rP~vaIlGGaKvsdKi~~i~~l~~k~D~iiigG~mAntFL~a~G~~IG~sl~e~~~~ 240 (390)
T d1v6sa_ 161 PAYAGFLMEKEVRALSRLLKDPERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRL 240 (390)
T ss_dssp CEEECHHHHHHHHHHHTTTSSCCSSEEEEECCSCGGGTHHHHHHHGGGCSEEEECSTTHHHHHHHTTCBCTTCCCCGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCEEEECCCHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 45668999999999999985446750899834640236999999997525666644177999997597668634431146
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~a~~~~~~i~lp~dv~~~~~~~~~~~~~~~~~~~i~~~~~ilDIG~~Ti~~~~~~I~~aktI~WNGPmGvfE 320 (390)
T d1v6sa_ 241 DLAKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREAFARALEGARTVFWNGPMGVFE 320 (390)
T ss_dssp HHHHHHHHHHHHHTCEEECCSEEEEESSCCTTCCCEEEETTBCCTTCEEEEECHHHHHHHHHHTTTCSEEEEESCSSCTT
T ss_pred HHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 66676777654302333333211220123677532356433310024432000134677887750264489975644502
Q ss_pred ---------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------9
Q 000711 482 ---------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~F~~GT~~i~~aia~~~~a~sIiGGGdT~aai~~~g~~~~fshVSTGGGA~Le~L~G~~LPgi~aL~~ 390 (390)
T d1v6sa_ 321 VPPFDEGTLAVGQAIAALEGAFTVVGGGDSVAAVNRLGLKERFGHVSTGGGASLEFLEKGTLPGLEVLEG 390 (390)
T ss_dssp STTTTHHHHHHHHHHHTCSSCEEEEESHHHHHHHHTTTCGGGSSEECCSSSHHHHHHHHSCCHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCCCHHHHCC
T ss_conf 5743079999999998558997999488999999974986787179577899999977999642143159
|
| >d1nsca_ b.68.1.1 (A:) Influenza neuraminidase {Influenza B virus, different strains [TaxId: 11520]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Influenza neuraminidase species: Influenza B virus, different strains [TaxId: 11520]
Probab=100.00 E-value=0 Score=29402.68 Aligned_cols=1 Identities=0% Similarity=-0.958 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~r~ge~~~n~~~lVtREPyVSC~p~eC~~FaL~QGt~l~~kHSNgTi~DRsp~RtL 80 (390)
T d1nsca_ 1 EPEWTYPRLSCQGSTFQKALLISPHRFGEARGNSAPLIIREPFIACGPKECKHFALTHYAAQPGGYYNGTREDRNKLRHL 80 (390)
T ss_dssp CCCCCCCCCBCSCSSEEEEEEECGGGGCCTTSCCCBEEEEEEEEEECSSCEEEEEEEEEEESSSSCCTTTTCSCCSSCEE
T ss_pred CCCCCCCCEEECCCHHHHHHCCCCCCCCCCCCCCCEEEEECCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHEE
T ss_conf 97554451210452123420227210254446674069727601018430145862054111686668841456411201
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~s~~lG~~P~~~ns~f~~vaWSsssCHDGk~wl~i~vtG~d~nA~A~~~Y~g~~tdsI~SW~~nILRTQESeCvCinG~C 160 (390)
T d1nsca_ 81 ISVKLGKIPTVENSIFHMAAWSGSACHDGREWTYIGVDGPDSNALIKIKYGEAYTDTYHSYANNILRTQESACNCIGGDC 160 (390)
T ss_dssp EEEETTSCCBTTTCEEEEECSEEEEEECSSCEEEEEEESCGGGCEEEEEETTEEEEEEECSSSSCCEECSSCCEEETTEE
T ss_pred EECCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCEEEEEEECCEEEEEHHHHHHHHCCCCCCCEEEECCEE
T ss_conf 22326799965663379987652433688724899878698872899998999964055334310200432048989989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~vvMTDGpA~~~A~~ki~~i~eGkIi~~~~l~g~~~HiEECSC~Yp~~~~V~CVCRDNW~GsNRPvv~in~~~~s~~~gY 240 (390)
T d1nsca_ 161 YLMITDGSASGISKCRFLKIREGRIIKEIFPTGRVEHTEECTCGFASNKTIECACRDNSYTAKRPFVKLNVETDTAEIRL 240 (390)
T ss_dssp EEEEEEECTTSCEEEEEEEEETTEEEEEECCEESCSBCEEEEEEESSSSEEEEEEECSSSCSSCEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEE
T ss_conf 99992688778542589998456288776058886724752115899881699970788888998499545534145315
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 vCSGl~~DTPR~~D~s~tg~C~~n~~~G~~GVKGgf~~~~~~~~~~vW~GRTiS~~SRSGfE~~kV~~gw~~~~s~~~~~ 320 (390)
T d1nsca_ 241 MCTETYLDTPRPDDGSITGPCESNGDKGRGGIKGGFVHQRMASKIGRWYSRTMSKTERMGMELYVRYDGDPWTDSDALAH 320 (390)
T ss_dssp CCCSSCCSSSCCCTTCCCSSTTCCCSCCSSCCCCCEEEEECSSCEEEEEEECSSSSSSEEEEEEEEESSCTTTCCCCCEE
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCEEE
T ss_conf 85366578999888887767888876888863565011012468874764420476667507999778987768620005
Q ss_pred ---------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------9
Q 000711 482 ---------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~q~iV~~~n~sgYSg~F~~~~k~C~~pCF~VElIRGrp~e~WTSnS~vvfCg~~s~~~~wswpDGA~i~l 390 (390)
T d1nsca_ 321 SGVMVSMKEPGWYSFGFEIKDKKCDVPCIGIEMVHDGGKKTWHSAATAIYCLMGSGQLLWDTVTGVDMAL 390 (390)
T ss_dssp EEEEEEEEEECCCEEEEEEECSSSEEEEEEEEEEECCCTTSCCEEEEEEEEECSSSCCCCCCCCCCCTTC
T ss_pred EEEEEECCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCEECCCEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 7899953788862178998589853022899997288766501375699972589977866998656689
|
| >d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Tryptophan synthase, beta-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=29399.41 Aligned_cols=1 Identities=0% Similarity=-1.058 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~g~~gg~~~pe~l~~~~~~l~~~~~~~~~~~~f~~e~~~~~~~~~grpTPL~~~~~Ls~~lg~~IylK~E~ln 80 (390)
T d1qopb_ 1 TTLLNPYFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNITAGTRTTLYLKREDLL 80 (390)
T ss_dssp CCSSCCEETTEEEEESCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCSCCEEECHHHHTTSSEEEEEEEGGGS
T ss_pred CCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHEHHHHHHHHCCEEEEEEECCC
T ss_conf 98777865683999687888999999999999997397899999999874489996553758654535977999971487
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ptGS~K~R~a~~~i~~A~~~G~~~iv~easaGN~g~a~A~aaa~~Gl~~~I~mp~~~~~~k~~~v~~m~~~GAeVv~v~~ 160 (390)
T d1qopb_ 81 HGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHS 160 (390)
T ss_dssp TTSBTHHHHHHHHHHHHHHTTCCEEEEEESSSHHHHHHHHHHHHHTCEEEEEEEHHHHHHCHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECC
T ss_conf 44656604899999987543873023103477899999999985367459963320011235888999865966999527
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~e~~~q~~~~~g~~pD~vv~~vGgGs~~~G~~ 240 (390)
T d1qopb_ 161 GSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMF 240 (390)
T ss_dssp TTSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHTTTHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHEE
T ss_conf 85136676999999976333555530343234334654110156655012389999970986306886235410111100
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~f~~~~~~~~ig~ep~~~g~~~~~~~a~~~~g~~g~~~~~~~~~~~~~~g~~~~~~s~a~gl~~~~~~~~~~~l~~~g~ 320 (390)
T d1qopb_ 241 ADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGR 320 (390)
T ss_dssp GGGTTCTTSEEEEEEEEETBGGGTBSCCHHHHSEEEEETEEEEEECBCTTSCBCCCCCSSGGGCCSSCCHHHHHHHHTTS
T ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf 11004663248613566356565444551035744554112454113688864443222455334662067899986286
Q ss_pred ---------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------9
Q 000711 482 ---------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------------------------------------s 482 (1338)
=
T Consensus 321 ~~~~~vtD~Ea~~a~~~La~~EGI~~a~Esa~Ava~Ai~~a~~~~~~~~~VVv~lsG~G~kD~~~~~~~l 390 (390)
T d1qopb_ 321 ADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTVHDIL 390 (390)
T ss_dssp SEEEEEEHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHHSTTSCEEEEEEECBBCGGGHHHHHHHC
T ss_pred EEEEEECHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHC
T ss_conf 3999999999999999999966984168269999999998635579998899997889734799999639
|
| >d1oj7a_ e.22.1.2 (A:) Hypothetical oxidoreductase yqhD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Hypothetical oxidoreductase yqhD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29396.80 Aligned_cols=1 Identities=0% Similarity=-0.426 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~m~~f~f~~P~~I~fG~g~l~~l~~~~~~~~~vliV~~~~~~~~~g~~~~v~~~L~~~~~~~f~~v~~~p~~~~v~~~ 80 (390)
T d1oj7a_ 1 KAGLNNFNLHTPTRILFGKGAIAGLREQIPHDARVLITYGGGSVKKTGVLDQVLDALKGMDVLEFGGIEPNPAYETLMNA 80 (390)
T ss_dssp CBCCCCEEEEEEEEEEESTTGGGGHHHHSCTTCEEEEEECSSHHHHHSHHHHHHHHTTTSEEEEECCCCSSCBHHHHHHH
T ss_pred CCCCCCCEEECCCEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHH
T ss_conf 99888808748986898569999999998679988999897168774399999997189947999282379999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~D~IIavGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~VPTtagtgse~t~~avi~~~~~ 160 (390)
T d1oj7a_ 81 VKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPATGSESNAGAVISRKTT 160 (390)
T ss_dssp HHHHHHHTCCEEEEEESHHHHHHHHHHHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSCSSCGGGSSEEEEEETTT
T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99976337877985478854408999999751874300344312466433467873335665443111243101124443
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~k~~~~~~~~~P~~~i~Dp~l~~~~P~~~~~~~~~Dal~h~~E~~~s~~~~~~~~~~~a~~~~~~~~~~l~~a~~~~~d 240 (390)
T d1oj7a_ 161 GDKQAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTKPVDAKIHDRFAEGILLTLIEDGPKALKEPEN 240 (390)
T ss_dssp TEEEEEECGGGSCSEEEECGGGGTTCCHHHHHHHHHHHHHHHHHHHSSSCBCCHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred CCEECCCHHHCCCCEEEEHHHHCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCC
T ss_conf 11000110000145046514430369744430322558888889871775321230367765555530134777760446
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~ar~~l~~as~~a~~~~~~~g~~~~g~~Hal~h~l~~~~~v~HG~~~ai~lp~v~~~~~~~~~~~~~~~a~~~~~~~~~ 320 (390)
T d1oj7a_ 241 YDVRANVMWAATQALNGLIGAGVPQDWATHMLGHELTAMHGLDHAQTLAIVLPALWNEKRDTKRAKLLQYAERVWNITEG 320 (390)
T ss_dssp HHHHHHHHHHHHHHSSSTTTTTSCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 89999888888998865540486666531344334310268765311233221332001111599999999995485469
Q ss_pred ---------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------9
Q 000711 482 ---------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~e~~~~~i~~i~~~~~~lglP~~L~e~Gv~~~~i~~la~~~~~~~~~~~~np~~l~~d~i~~il~~A~ 390 (390)
T d1oj7a_ 321 SDDERIDAAIAATRNFFEQLGVPTHLSDYGLDGSSIPALLKKLEEHGMTQLGENHDITLDVSRRIYEAAR 390 (390)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCCSGGGGTCCSTTHHHHHHHHHHTTCSSBTTTTCBCHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHCC
T ss_conf 9699999999999999998498999899199999999999999863555309997899999999999509
|
| >d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp., ksm-k38 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp., ksm-k38 [TaxId: 1409]
Probab=100.00 E-value=0 Score=29399.29 Aligned_cols=1 Identities=0% Similarity=0.338 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~i~~kLdyLk~LGvt~I~l~Pi~~~~~~~~~gY~~~d~~~~~~~~~~~~vd~~~Gt~ 80 (390)
T d1ud2a2 1 DGLNGTMMQYYEWHLENDGQHWNRLHDDAAALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKGTVRTKYGTK 80 (390)
T ss_dssp CCCCCCEEECCCTTCCCSSCHHHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCH
T ss_pred CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 99777699844057788897799999979999976998899697803888889998866774445554457768889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~efk~lV~~~H~~GI~VilDvV~NHt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (390)
T d1ud2a2 81 AQLERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTNRWQDISGAYTIDAWTGFDFSGRNNAYSDFKWRWFHF 160 (390)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCGGGTTSSCCCCBCGGGE
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999998558813898714554676630344420268654332345543445554556776677678776543445
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~dg~r~D~~~~~~~~~ 240 (390)
T d1ud2a2 161 NGVDWDQRYQENHIFRFANTNWNWRVDEENGNYDYLLGSNIDFSHPEVQDELKDWGSWFTDELDLDGYRLDAIKHIPFWY 240 (390)
T ss_dssp EEEEEETTTTEEEEEEETTCCCCSSCCCTTSCCCCCSSEEECTTSHHHHHHHHHHHHHHHHHHTCSEEEETTGGGSCHHH
T ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCHHHCCHHH
T ss_conf 78876655777751211687655555422222222334410004889999988765301210124653334320067677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (390)
T d1ud2a2 241 TSDWVRHQRNEADQDLFVVGEYWKDDVGALEFYLDEMNWEMSLFDVPLNYNFYRASQQGGSYDMRNILRGSLVEAHPMHA 320 (390)
T ss_dssp HHHHHHHHHHHCSSCCEEEECCCCSCHHHHHHHHHHTTTCSEEECHHHHHHHHHHHHHCTTSCGGGTTTTCHHHHCGGGE
T ss_pred HHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCE
T ss_conf 88888887643202103411124786110101245432333203678889999875134469999987533033783326
Q ss_pred ---------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------9
Q 000711 482 ---------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------------------------------------s 482 (1338)
+
T Consensus 321 v~fl~nHD~~r~~~~~~~~~~~~~~~~~~~il~~~pG~P~iy~GdE~G~~~~~~~~~~d~i~~l~~~R~~ 390 (390)
T d1ud2a2 321 VTFVDNHDTQPGESLESWVADWFKPLAYATILTREGGYPNVFYGDYYGIPNDNISAKKDMIDELLDARQN 390 (390)
T ss_dssp EECSCCTTTSTTSTTCCCCCTTTHHHHHHHHHSSSSSEEEEEHHHHHCBGGGTBCCCHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 8870277665400013675789999999999985799849974265097998985126888999997389
|
| >d1sg6a_ e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Dehydroquinate synthase, DHQS domain: Dehydroquinate synthase, DHQS species: Aspergillus nidulans [TaxId: 162425]
Probab=100.00 E-value=0 Score=29323.39 Aligned_cols=1 Identities=0% Similarity=-0.161 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 p~~i~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ivtD~~v~~l~~~~v~~~l~~~~~~~~~~~~~~~~~~~~gE~~ 80 (389)
T d1sg6a_ 1 PTKISILGRESIIADFGLWRNYVAKDLISDCSSTTYVLVTDTNIGSIYTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVS 80 (389)
T ss_dssp CEEEEETTEEEEEEETTHHHHTHHHHHHHHSCCSEEEEEEEHHHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECSSGGG
T ss_pred CCEEEECCCCCEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCC
T ss_conf 91688769731898888078775999984179981899978965898999999999870742146762489981698452
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 Ks~~~~~~i~~~~~~~~~~~~r~d~IiaiGGG~v~D~ak~~A~~y~rgi~~i~vPTtlla~~Das~g~k~~in~~~~kn~ 160 (389)
T d1sg6a_ 81 KSRQTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGFVASTYMRGVRYVQVPTTLLAMVDSSIGGKTAIDTPLGKNL 160 (389)
T ss_dssp SSHHHHHHHHHHHHTSSSCCCTTCEEEEEESHHHHHHHHHHHHHGGGCCEEEEEECSHHHHHTTTSSCEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCHHCCCCCCCCCEEEECCCCCCCE
T ss_conf 89999999999999628876777569996563477889999999855876367314021256653232134211366421
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~g~~~~P~~V~iD~~~l~tlP~r~~~aG~~e~ik~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~I 240 (389)
T d1sg6a_ 161 IGAIWQPTKIYIDLEFLETLPVREFINGMAEVIKTAAISSEEEFTALEENAETILKAVRREVTPGEHRFEGTEEILKARI 240 (389)
T ss_dssp EEEECCCSEEEEEGGGGGTSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCCCCTTSCTTGGGHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHH
T ss_conf 21012045552005554341799998634235553212687888899986999987544201201322104699999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~s~~~k~~iv~~d~~e~g~r~~ln~GHt~~HAlE~~~~~~~lHGEaVaiGml~~~~ls~~~g~l~~~~~~~i~~~l~~l 320 (389)
T d1sg6a_ 241 LASARHKAYVVSADEREGGLRNLLNWGHSIGHAIEAILTPQILHGECVAIGMVKEAELARHLGILKGVAVSRIVKCLAAY 320 (389)
T ss_dssp HHHHHHHHHHHHC-----CGGGGGGTTHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 99999863202333443263310135466788887632234568889998899999999993799999999999999986
Q ss_pred --------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------9
Q 000711 482 --------------------------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------------------------s 482 (1338)
|
T Consensus 321 gLPt~l~dl~~~~~~~~~~~~~~~l~~~~~~DKK~~~~~i~~vl~~~iG~~~~~~~~~~~~~~i~~~L~ 389 (389)
T d1sg6a_ 321 GLPTSLKDARIRKLTAGKHCSVDQLMFNMALDKKNDGPKKKIVLLSAIGTPYETRASVVANEDIRVVLA 389 (389)
T ss_dssp TCCCSTTCHHHHHHTTTCCCCHHHHHHHHHTCCE-------ECCEEETTEESSSSCEECCHHHHHHHCC
T ss_pred CCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEECCCCCCHHHHHHHHC
T ss_conf 999654344200013434599999999986378857997899967457767663277599899999739
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=29322.42 Aligned_cols=1 Identities=100% Similarity=-0.992 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~r~~~~~~~~i~~l~~~a~~~~~~g~~vi~l~~G~p~~~~p~~~~~al~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~ 80 (389)
T d2gb3a1 1 FSDRVLLTEESPIRKLVPFAEMAKKRGVRIHHLNIGQPDLKTPEVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRR 80 (389)
T ss_dssp CCHHHHSCCCCTTGGGHHHHHHHHHTTCEEEECSSCCCCSCCCTHHHHHHHHTCCSSCCCCCTTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 97456348987788899999999976998888989989999889999999850777778899868999999999998886
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~g~~~~~~~I~it~G~~~~l~~~~~~l~~~gd~V~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (389)
T d2gb3a1 81 QRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFINERT 160 (389)
T ss_dssp SCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCCCTTGGGGCCTTE
T ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
T ss_conf 39876552699625543221222112235798688707987433432113686321232222355420245554215674
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~~~~GlRiG~ 240 (389)
T d2gb3a1 161 KGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGC 240 (389)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEE
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 07984798766443210899999984234499999994131002323322222222223443345565334576563132
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~g~~~~~~l 320 (389)
T d2gb3a1 241 LITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAEL 320 (389)
T ss_dssp EECSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBSSEEEEEC
T ss_pred EECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEC
T ss_conf 51100268998766420122223222222222322320002232333321002344445430463236999558999958
Q ss_pred --------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------9
Q 000711 482 --------------------------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------------------------s 482 (1338)
+
T Consensus 321 p~~~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~~~~~~~l~~a~~~L~~~lk~f~~ 389 (389)
T d2gb3a1 321 PVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGLKMFCS 389 (389)
T ss_dssp SSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999986006329789994750146888889989999728999999999999999999619
|
| >d1jiha2 e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: Lesion bypass DNA polymerase (Y-family), catalytic domain domain: DNA polymerase eta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=29320.39 Aligned_cols=1 Identities=0% Similarity=-1.225 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~~~l~~~~~~~~~~~~vI~hiDmD~FyAsvE~~~~p~l~~~Pv~V~q~~~via~sYeAR~~GVk~gm~~~eA 80 (389)
T d1jiha2 1 MSKFTWKELIQLGSPSKAYESSLACIAHIDMNAFFAQVEQMRCGLSKEDPVVCVQWNSIIAVSYAARKYGISRMDTIQEA 80 (389)
T ss_dssp CCSSBHHHHHGGGCTTTGGGSTTCCEEEEECTTHHHHHHHHHTTCCTTSCEEEEETTEEEEECHHHHTTTCCTTSCHHHH
T ss_pred CCCCCHHHHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCEEEEECCEEEEECHHHHHHCCCCCCCHHHH
T ss_conf 98413645877279752236877679997365089989967563526997799008869998999997199878929999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~k~CP~li~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~Yr~~S~~v~~il~~~~~~vE~~SIDEaflD 160 (389)
T d1jiha2 81 LKKCSNLIPIHTAVFKKGEDFWQYHDGCGSWVQDPAKQISVEDHKVSLEPYRRESRKALKIFKSACDLVERASIDEVFLD 160 (389)
T ss_dssp HHHCTTCEEEECCEEETTCSSEECCTTCSTTCSCTTSCCCSSSEEECCHHHHHHHHHHHHHHHHHCSCEEEEETTEEEEE
T ss_pred HHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEE
T ss_conf 98697636852121234444333344320001331001465326898899999999999999986888057416637897
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 lT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~ 240 (389)
T d1jiha2 161 LGRICFNMLMFDNEYELTGDLKLKDALSNIREAFIGGNYDINSHLPLIPEKIKSLKFEGDVFNPEGRDLITDWDDVILAL 240 (389)
T ss_dssp CHHHHHHHHHHCCSCBSSSSCBHHHHTHHHHHHHHHCCSCTTSBCCCCCGGGGGCCCCSEECCTTCCCSCCSHHHHHHHH
T ss_pred CCHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 50023220355431000122112332212345433332233234456642111222244433433344444356654028
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 g~~ia~~IR~~I~~etGlt~S~GIa~NK~LAKlAs~~~KPngqtvl~~~~v~~fl~~~~lpi~ki~GIG~k~~kkL~~~l 320 (389)
T d1jiha2 241 GSQVCKGIRDSIKDILGYTTSCGLSSTKNVCKLASNYKKPDAQTIVKNDCLLDFLDCGKFEITSFWTLGGVLGKELIDVL 320 (389)
T ss_dssp HHHHHHHHHHHHHHHHCCCCEEEEESSHHHHHHHHTTTCSSCEEECCGGGHHHHHTSSSCCGGGSGGGSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHH
T ss_conf 99999999999999869984302455289999988744988558667899999997267872020787889999999984
Q ss_pred --------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------9
Q 000711 482 --------------------------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 gi~t~~di~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~f~l~Rg~~~~pv~~r 389 (389)
T d1jiha2 321 DLPHENSIKHIRETWPDNAGQLKEFLDAKVKQSDYDRSTSNIDPLKTADLAEKLFKLSRGRYGLPLSSR 389 (389)
T ss_dssp TCCSSSHHHHHHHHSCSCHHHHHHHHHHHHTSTTCCTTTCSSCTTCHHHHHHHHHHHTTTCCCCCCCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 897613399987653688999855000655541068776555753244248888644147638888889
|
| >d1e9yb2 c.1.9.2 (B:132-431,B:481-569) alpha-subunit of urease, catalytic domain {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Helicobacter pylori [TaxId: 210]
Probab=100.00 E-value=0 Score=29331.15 Aligned_cols=1 Identities=100% Similarity=1.268 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
|
T Consensus 1 GiDtHvHfi~Pqq~~~al~sGiTT~iGgGtGPa~Gt~att~tpg~~~i~~ml~a~d~~P~N~g~~gkGn~s~~~~l~eqi 80 (389)
T d1e9yb2 1 GIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEEYSMNLGFLAKGNASNDASLADQI 80 (389)
T ss_dssp EEEEEEETTCTTHHHHHHHTTEEEEEEECCSSCHHHHHCCCCCHHHHHHHHHHHHTTSSSEEEEEEECCCSCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 95545334488789999856870774586588877776552797608999998600377253662116779837899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~aGa~GlKiHEDwGatp~~Id~~L~vad~~dvqv~iHtDtlNE~Gfve~T~~a~~gRtiH~~HtEGaGGGHAPDii~~~~ 160 (389)
T d1e9yb2 81 EAGAIGFKIHEDWGTTPSAINHALDVADKYDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAG 160 (389)
T ss_dssp HTTCSEEEECGGGCCCHHHHHHHHHHHHHTTCEEEECCCTTCSSCCHHHHHHHHTTCCEEETTTTSTTSCSTTTGGGGGG
T ss_pred HHCCCEEECCCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHCC
T ss_conf 72303220231026787888899998775095389438976654303648998679752003137777777617888705
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~nvLpsSTnPT~Pyt~nt~~EhldMlmvcHhL~~~ipeDvafAesRiR~eTIaAEdvLhD~GaiSi~sSDsqaMGRvgE 240 (389)
T d1e9yb2 161 EHNILPASTNPTIPFTVNTEAEHMDMLMVCHHKDKSIKEDVQFADSRIRPQTIAAEDTLHDMGAFSITSSDSQAMGRVGE 240 (389)
T ss_dssp STTEEEEECGGGCSCBTTHHHHHHHHHHHTTTCCSSCHHHHHHHHHHCCHHHHHHHHHHHHTTSCCEECCCTTSSCCTTS
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHCHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHH
T ss_conf 77766788999878666628886345241034798980267777630330223367776336854531366644443677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 vi~RtwQtA~kmk~~rG~l~~d~~~~DN~RvkRYiAKYTINPAIahGis~~VGSvE~GK~a~G~A~~~tSvtFVSqaAid 320 (389)
T d1e9yb2 241 VITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVHHGKAKYDANITFVSQAAYD 320 (389)
T ss_dssp HHHHHHHHHHHHHHHHCSCSSCCSSSCHHHHHHHHGGGTHHHHHHTTCTTTSSSSCTTSBGSTTHHHHHCEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHCCCHHCCCCCCCCCCCCCCCCCCCEEEEECHHHHH
T ss_conf 89999998999998863687667776427777666650568577558211048625366135867665635886688875
Q ss_pred --------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------9
Q 000711 482 --------------------------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------------------------s 482 (1338)
=
T Consensus 321 ~Gi~~~LGL~K~l~pVkn~R~ItK~DM~~Nda~P~IeVDPETYeV~aDGelltcePA~~LPLAQRYFLF 389 (389)
T d1e9yb2 321 KGIKEELGLERQVLPVKNCRNVTKKDMQFNNTTAHIEVNPETYHVFVDGKEVTSKPANKVSLAQLFSIF 389 (389)
T ss_dssp TTHHHHTTCCSEEEECCCCSSCCGGGSTTCCCCCCEEECTTTCCEEETTEECCCCCBSCCSSSTTTCCC
T ss_pred CCCHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCEEECCCCEEEEECCEECCCCCCCCCCCHHCCCCC
T ss_conf 787677387752786138887887785115789982689997689889999135765657630110177
|
| >d2o3ia1 e.73.1.1 (A:2-390) Hypothetical protein CV3147 {Chromobacterium violaceum [TaxId: 536]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: CV3147-like superfamily: CV3147-like family: CV3147-like domain: Hypothetical protein CV3147 species: Chromobacterium violaceum [TaxId: 536]
Probab=100.00 E-value=0 Score=29315.49 Aligned_cols=1 Identities=0% Similarity=0.338 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~Ls~~Dl~~i~~Ga~iLGtGGGGdp~~~~~l~~~~~~~~~~~~~~V~li~~del~D~~~V~v~~mGAPtv~~E~~~~~ 80 (389)
T d2o3ia1 1 AFELSPSDLEPLLQGACFFGSGGGGTMISARHLAANFRKGDYYPTDKVRVVDVDEATDGDCVMVAYMGAPDAINQVQWPN 80 (389)
T ss_dssp CEEECGGGHHHHHHHHHHTTTTCSCCHHHHHHHHTTCSBTTTBSCSCEEEECGGGCCSSEEEEEEEEECHHHHTTCSSCH
T ss_pred CCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEECHHHCCCCCEEEEEEEECCHHHHEECCCC
T ss_conf 93757999999851459997278876688999999986642257996699535336888899997640787883405799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~e~~~a~~~l~~~~g~~~~av~~~EiGG~Ns~~pl~~AA~~glPvVDaD~mGRAfPelqm~t~~i~G~~~~P~~lad~ 160 (389)
T d2o3ia1 81 GPVEAALAARQRLESQGRKLAYVVAPESGALGFVVASLVAAKLGLAVVDADGAGRAVPSLPMLTYAAAGVPPTPAFLAGE 160 (389)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHTCEEESBCSSSSCCSSGGGSHHHHTTCCCCSEEEECS
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCHHHEEHEECCCCCCCEEEECC
T ss_conf 75799999999999719975799951668722789999999719988747875456774322000105899887699728
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~Gn~~i~~~~~~~~~~~~~e~~~~~~e~~~R~~~~~~~~Gg~~~~a~~pm~~~~~~~~~~I~gTlS~A~~iGrav~~ar~ 240 (389)
T d2o3ia1 161 SGLCVELGVRMPPPDGQRREDISTVVEQMLRPILTNPQFGQFGGLAMWMMSPAQLGGALPVRGTLSRALKLGRALQDGKV 240 (389)
T ss_dssp SSCEEEEEEECCCCC---CCCHHHHHHHHHHHHTTSTTTCSEEEEEEEEECHHHHHHHCCSBSHHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99779984023555412577899999998877766875174347862659989983201168559999999899998664
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~l~~~~~~~g~~~l~~Gki~~v~r~~~~Gf~~G~v~ieg~~~~~~i~fqNE~L~a~~~g~~~~la~vPDLI~ 320 (389)
T d2o3ia1 241 KTAEAMLDFLRRELDIKGKLLFGPATLASPEVSTAGGFDLGKVVLEDGERRCTVLYQNESLLAWDSALSHPLATAPDAIS 320 (389)
T ss_dssp CSHHHHHHHHHHHHCCCCEEEEEEEEECCC----------CEEEEESSSCEEEEEESSSEEEEEETTCSSCSEETTSEEE
T ss_pred CCCCHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCCEEEEEEEECCCEEEEEEEEECEEEEEECCCCCEEEECCCEEE
T ss_conf 24327999998732667868999689997799705871789999907985899999814189998798978997796799
Q ss_pred --------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------9
Q 000711 482 --------------------------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~lD~~tG~pitte~~~~~~~~g~~~~ryG~~V~Vi~~pa~~~wrt~~~l~~~GP~~~~fGy~~~y~P~e 389 (389)
T d2o3ia1 321 YFVEGEGQHVFSNGDLSGNDHGLDPSVRGRKAAVIALPAAAPLSEGLILQSFADELAQLGYLGPYAPVD 389 (389)
T ss_dssp EEECSSSCCCCCHHHHBCSSSSBCTTTTTSEEEEEEECCCGGGSSHHHHHHHHHHHHHTTCCSCCCCCC
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHCCHHHHHHCCCHHHHCCCCCCCCCCC
T ss_conf 986688864423332345556654234798899999609827486333655095055359997765288
|
| >d1f8ea_ b.68.1.1 (A:) Influenza neuraminidase {Influenza A virus, different strains [TaxId: 11320]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Influenza neuraminidase species: Influenza A virus, different strains [TaxId: 11320]
Probab=100.00 E-value=0 Score=29253.22 Aligned_cols=1 Identities=0% Similarity=-1.024 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~n~~kplC~i~G~a~~sKDN~IRig~~g~i~V~REPyVSC~p~eC~~FaL~QGa~l~~kHSNgTi~DRsp~RtL~s~ 80 (388)
T d1f8ea_ 1 RDFNNLTKGLCTINSWHIYGKDNAVRIGEDSDVLVTREPYVSCDPDECRFYALSQGTTIRGKHSNGTIHDRSQYRALISW 80 (388)
T ss_dssp CCCCCCCCEECCCSEEEEEEECCHHHHHTTSCBEEEEEEEEEEETTEEEEEEEEEEEESSSGGGTTTTCSCCTTCEEEEE
T ss_pred CCHHHCCCCCCCCCCEEEEECCCCEEECCCCCEEEEECCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHEEEEC
T ss_conf 94011376666433146661477168638987899826512028202034762043101786668841566510113441
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~lG~~p~~~ns~f~~vaWSsssCHDGk~Wl~i~vtG~D~nA~A~~~Y~g~~tdti~SW~~nILRTQESeCvCinG~C~vv 160 (388)
T d1f8ea_ 81 PLSSPPTVYNSRVECIGWSSTSCHDGKTRMSICISGPNNNASAVIWYNRRPVTEINTWARNILRTQESECVCHNGVCPVV 160 (388)
T ss_dssp ETTSCCBTTTCEEEEESSEEEEEECSSSEEEEEEESCTTSCEEEEEETTEEEEEEECSSSSCCBCCSSCCCCBTTEEEEE
T ss_pred CCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCEEEEHHHHHHHHHCCCCCCCEEEECCEEEEE
T ss_conf 26899966774589998643444689724899878798883799998999963265444311100322048989988999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 mTDG~A~~~A~~ri~~i~eGkIik~~~l~g~~~HiEECSCYp~~~~V~CvCRDNW~GsNRP~v~in~~~~~~~~~YvCsg 240 (388)
T d1f8ea_ 161 FTDGSATGPAETRIYYFKEGKILKWEPLAGTAKHIEECSCYGERAEITCTCRDNWQGSNRPVIRIDPVAMTHTSQYICSP 240 (388)
T ss_dssp EEEECSSSCEEEEEEEEETTEEEEEEECCSSCCCCEEEEEEEETTEEEEEEECCSSCSSCEEEEEETTTTEEEEEECCCS
T ss_pred EECCCCCCCCCEEEEEEECCEEEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEECC
T ss_conf 92688778631589998566388876169886731763422899946999706888888975995455431443278646
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~DTPR~~D~s~g~C~~p~~~~g~~GVKGf~f~~G~~vW~GRTiS~~sRsGfE~~~v~~gwt~~~s~~~~~q~iv~n~n 320 (388)
T d1f8ea_ 241 VLTDNPRPNDPTVGKCNDPYPGNNNNGVKGFSYLDGVNTWLGRTISIASRSGYEMLKVPNALTDDKSKPTQGQTIVLNTD 320 (388)
T ss_dssp SCCSSSCCCCCSSCCSSSCCCSCCSCCCCCCEECCTTSCEEEECSCSSSSEEEEEEECTTTTTCTTCCCSEEEEEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCCCCCCHHHHCCEEEEECCC
T ss_conf 44789998988866478987778888734314766897687664247667761699934875276603204228996587
Q ss_pred -------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 wSGYSGsF~~~~~~~~C~~pCFyVElIRGrp~E~~v~WTSnSiv~fCG~~~~~g~~swpDGA~i~ff~ 388 (388)
T d1f8ea_ 321 WSGYSGSFMDYWAEGECYRACFYVELIRGRPKEDKVWWTSNSIVSMCSSTEFLGQWDWPDGAKIEYFL 388 (388)
T ss_dssp ECCCEEEECCTTCSSSEECCEEEEEEEEETTTCTTSSCEEEEEEEEEEESSCCCCCCCCCCCCGGGGC
T ss_pred CCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 77561771234348873011489999618876563467407779993679986786689865465559
|
| >d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Vacuolar ATP synthase subunit C superfamily: Vacuolar ATP synthase subunit C family: Vacuolar ATP synthase subunit C domain: Vacuolar ATP synthase subunit C species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=29250.76 Aligned_cols=1 Identities=0% Similarity=-2.154 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~y~lvSlP~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~f~IP~lKvGTLDsLv~lsDeL~KlD~~ve~vv~Kv~~ 80 (388)
T d1u7la_ 1 LYTANDFILISLPQNAQPVTAPGSKTDSWFNETLIGGRAFVSDFKIPEFKIGSLDTLIVESEELSKVDNQIGASIGKIIE 80 (388)
T ss_dssp CCCCCEEEEEEEETTCCCTTSTTCCHHHHHHHTGGGGTSEEEECCCCCCBCSCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97565069998778788889850468999985225887236304798777135999998788888788899999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~l~~~~~~~~~~l~v~~~~~~~yl~~F~Wd~aKyp~~~~l~elv~~i~~~~~~id~dlk~k~~~Yn~~K~~l~~~~R 160 (388)
T d1u7la_ 81 ILQGLNETSTNAYRTLPINNMPVPEYLENFQWQTRKFKLDKSIKDLITLISNESSQLDADVRATYANYNSAKTNLAAAER 160 (388)
T ss_dssp HHHHTTSSCSSSCCSCCBTTBCHHHHHHTCCCCTTTSCTTSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHEEEECCCCHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99987236110321676878138987564460444288889899999999999998889999999999999999998740
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 K~~G~L~~r~L~diV~~ed~V~dSEyLtTllVvVPk~~~~dwl~~YEtL~~~VVPrSs~~i~~D~e~~L~~VtlFkk~~~ 240 (388)
T d1u7la_ 161 KKTGDLSVRSLHDIVKPEDFVLNSEHLTTVLVAVPKSLKSDFEKSYETLSKNVVPASASVIAEDAEYVLFNVHLFKKNVQ 240 (388)
T ss_dssp HTCSCTTTSCCTTTCCGGGSCCSCSSEEEEEEEEEGGGHHHHHHHGGGSSTTBCTTCCEEEEECSSEEEEEEEEEGGGHH
T ss_pred CCCCCEEECCHHHHCCHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHCCCCCCCHHHHCEECCCEEEEEEEEEHHHHH
T ss_conf 04785262427752798872553314058999961531788999986325762687155302568805899999723199
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 eF~~~aRE~kf~vRdF~y~ee~~~~~~~e~~~l~~~~~~~~~~L~r~~~~~fse~f~~wiHiKalRvFVESVLRYGLP~~ 320 (388)
T d1u7la_ 241 EFTTAAREKKFIPREFNYSEELIDQLKKEHDSAASLEQSLRVQLVRLAKTAYVDVFINWFHIKALRVYVESVLRYGLPPH 320 (388)
T ss_dssp HHHHHHHHTTCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999997594304266797899999999999999999999999999999999999999998568766433453589834
Q ss_pred -------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 F~~~li~p~~k~~kklr~~L~~~f~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ey~PyV~~~i~l 388 (388)
T d1u7la_ 321 FNIKIIAVPPKNLSKCKSELIDAFGFLGGNAFMKDKKGKINKQDTSLHQYASLVDTEYEPFVMYIINL 388 (388)
T ss_dssp EEEEEEEECTTCHHHHHHHHHHHHGGGGCTTCC------------------------CCSSEEEEEEC
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
T ss_conf 13899950872589999999998634265300234446667776543212335677515549998349
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=29248.69 Aligned_cols=1 Identities=100% Similarity=2.364 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
|
T Consensus 1 gll~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 80 (388)
T d1w3ba_ 1 GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKER 80 (388)
T ss_dssp CCCTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 96999999998699999999999999868998999999999999869999999999999985999899999999996420
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 00222222222121122222222222222222222222222221112222222222222222222110001356788887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 240 (388)
T d1w3ba_ 161 AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 40258610689986363010247199999999999984946499999971552200529999999998577755479999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 320 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN 320 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 99999999878999999999999984999899999999999974879999999986540487300101579999998789
Q ss_pred -------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------------s 482 (1338)
=
T Consensus 321 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999999999986889899999999999985999999999999997099989999999999998589
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=100.00 E-value=0 Score=29248.00 Aligned_cols=1 Identities=100% Similarity=0.869 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~k~~~~~LtfDDVlLvP~~st~~~~~vdl~~~~t~~~~l~iPIisA~MDtVt~~~mAi~ma~~GGlgVihr~~~ie~q~~ 80 (388)
T d1eepa_ 1 NKITKEALTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHKNMSIEAQRK 80 (388)
T ss_dssp CCSCCCCCCGGGEEECCCCCCSCGGGCCCCEESSSSCEESSSEEECCCTTTCSHHHHHHHHHHTSEEEECSSSCHHHHHH
T ss_pred CCCCCCCCCCCCEEEECCCCCCCHHHCEEEEEEECCEECCCCEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHH
T ss_conf 96333578841079827988777778354489538776699877169888788999999998798899908999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~v~~Vk~~~~~~~~~~~~d~~~~~~~~~t~~~~~~~~~a~~d~~~~~~~p~~~~d~~~~l~vgaAvg~~~~~~~ra~~L~ 160 (388)
T d1eepa_ 81 EIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTIERVEELV 160 (388)
T ss_dssp HHHHHHTCC--------------------------------------CCTTCCBCTTSCBCCEEEECSCTTHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHH
T ss_conf 99986230044520036763310223300554422547877188876506777655224101220589789999999877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~aG~D~ivID~AhG~s~~~~~~i~~ik~~~~~v~vIaGNV~T~e~a~~L~~~GaD~VkVGiGpGs~CtTr~~~GvG~pq~ 240 (388)
T d1eepa_ 161 KAHVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQI 240 (388)
T ss_dssp HTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTTTCSEEEECSSCSTTSHHHHHHCCCCCHH
T ss_pred HHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHH
T ss_conf 51254543103663167799999999987899866500126799999998629775543122232345654236674238
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 sai~~~~~~~~~~~vpiIADGGi~~~Gdi~KAla~GAd~VMlG~~lAg~~Espg~~~~~~g~~~k~~~gm~S~~a~~~g~ 320 (388)
T d1eepa_ 241 TAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKRGS 320 (388)
T ss_dssp HHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEECHHHHTBTTSSSCEEEETTEEEEC--------------
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEEEECCCEEECCHHHHCCCCCCCEEEEECCCEEECCCCCCCHHHHHCCC
T ss_conf 89999999861577157853666737730136785155034053654136788418985892740155665487775445
Q ss_pred -------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------------s 482 (1338)
+
T Consensus 321 ~~~~~~~~~~~~~~~~~EG~~~~v~~~G~~~~~~~~l~gglrs~m~y~Ga~~l~e~~~~~~fv~vt~~ 388 (388)
T d1eepa_ 321 KSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATISDLKINSKFVKISHS 388 (388)
T ss_dssp ----------------------CEECCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHSCCEEECCCC
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCEEEEECCC
T ss_conf 21013334664422346704987078887899999999999997421586629998539889997899
|
| >d1qxoa_ d.258.1.1 (A:) Chorismate synthase, AroC {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Chorismate synthase, AroC superfamily: Chorismate synthase, AroC family: Chorismate synthase, AroC domain: Chorismate synthase, AroC species: Streptococcus pneumoniae [TaxId: 1313]
Probab=100.00 E-value=0 Score=29247.95 Aligned_cols=1 Identities=0% Similarity=-1.790 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 lR~tT~GESHG~aig~vIdG~PaGl~i~~~~I~~~L~RR~pG~~~~~t~R~E~D~v~ilSGv~~G~TtG~PI~~~I~N~D 80 (388)
T d1qxoa_ 1 MRYLTAGESHGPRLTAIIEGIPAGLPLTAEDINEDLRRRQGGYGRGGRMKIENDQVVFTSGVRHGKTTGAPITMDVINKD 80 (388)
T ss_dssp CEEEEECCTTSSEEEEEEECCCBTCBCCHHHHHHHHHHHHCSTTCCTHHHHCCCCCEEEESEETTEECSSCEEEEEECGG
T ss_pred CCEEECCCCCCCEEEEEEECCCCCCEECHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCEECCCCEEEEEECCC
T ss_conf 95541313688834899816186887499999999955798999997668999827994644389806774499998787
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~PRPGHAD~~~~~Kyg~~d~r~gggRsSaReTa~rVAaGaiAk~~L~~~gI~v~s~ 160 (388)
T d1qxoa_ 81 HQKWLDIMSAEDIEDRLKSKRKITHPRPGHADLVGGIKYRFDDLRNSLERSSARETTMRVAVGAVAKRLLAELDMEIANH 160 (388)
T ss_dssp GGGGTTTTCSSCCCGGGTTTTCCCSCCTTSSHHHHHHHHTCSSTHHHHHHHSGGGHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf 77754444411123455432012457888435789987478656687751688999999999999999999819735235
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 v~~IG~i~~~~~~~~~~~~~~~~~~~~~~~c~d~~~~~~m~~~I~~ar~~gDSlGG~ve~~~~gvP~GLG~pv~~d~kLd 240 (388)
T d1qxoa_ 161 VVVFGGKEIDVPENLTVAEIKQRAAQSEVSIVNQEREQEIKDYIDQIKRDGDTIGGVVETVVGGVPVGLGSYVQWDRKLD 240 (388)
T ss_dssp EEEETTEECCCCSSCCHHHHHHHHHTSTTCCSCGGGHHHHHHHHHHHHHTTCCBCEEEEEEEESCCTTCSCSSSGGGCHH
T ss_pred EEEECCEECCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCC
T ss_conf 68741320267443687888764311556467868855668889999853887676399999717833368866776541
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 a~La~AlmSIpAvKgvEfG~GF~~a~~~GSe~nD~~~~~~~~~~~~~tN~~GGi~GGISnG~pI~~rva~KPtsSI~~~q 320 (388)
T d1qxoa_ 241 ARLAQAVVSINAFKGVEFGLGFEAGYRKGSQVMDEILWSKEDGYTRRTNNLGGFEGGMTNGQPIVVRGVMKPIPTLYKPL 320 (388)
T ss_dssp HHHHHHHHTSTTEEEEEETTGGGGGGSBGGGTSCCEEEETTTEEEESCCTTTTEETTEECSSCEEEEEEECCCSCCSSCE
T ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCC
T ss_conf 89998774243113453056488897421455650100466784113688762016777788769999957865567755
Q ss_pred -------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------------s 482 (1338)
=
T Consensus 321 ~Tvd~~~~e~~~~~~gRhDpCivpRAvpV~EAm~alvLad~~L~k~g~d~l~~~~~~~~~y~~~~~~~ 388 (388)
T d1qxoa_ 321 MSVDIETHEPYKATVERSDPTALPAAGMVMEAVVATVLAQEILEKFSSDNLEELKEAVAKHRDYTKNY 388 (388)
T ss_dssp EEECTTTCCEEEECCSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHSCCSBHHHHHHHHHHHHHHHHTC
T ss_pred CCEECCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 53566898067246898897075532899999999999999999857775999999999999998519
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=100.00 E-value=0 Score=29246.33 Aligned_cols=1 Identities=0% Similarity=-1.290 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~PGP~~~~~~V~~Am~~~~~~hr~~ef~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a 80 (388)
T d2ch1a1 1 KFTPPPASLRNPLIIPEKIMMGPGPSNCSKRVLTAMTNTVLSNFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAG 80 (388)
T ss_dssp CCCCCCGGGSSCCCCCCCBCCSSSSCCCCHHHHHHTTSCCCCTTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHH
T ss_pred CCCCCCHHHCCCCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHH
T ss_conf 98999634437668885540108998889999997476778878899999999999999999689997199976848999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~ea~~~~l~~~~~~vl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~ 160 (388)
T d2ch1a1 81 MEAMLSNLLEEGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQP 160 (388)
T ss_dssp HHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCC
T ss_conf 99999974211133333222310000033443311332123565445521012344430478633565302222322211
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~i~~~~~~~~~~~~vD~~ss~g~~pid~~~~~~d~~~~s~~K~~~gp~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (388)
T d2ch1a1 161 LEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLL 240 (388)
T ss_dssp CTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHH
T ss_pred HHHHCCHHCCCCCEEEEEEEECCCCCCCCHHCCCCEEEEECCCCCCCCCCEEEEEECCHHHHHHHHCCCCCCCCCCCCCH
T ss_conf 12200000146540366532102346621230576399982655457887289972427788754202575531025603
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~~~ 320 (388)
T d2ch1a1 241 LLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIM 320 (388)
T ss_dssp HHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEE
T ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCEEEEEE
T ss_conf 55543023320025576532778999999999998766677898887777877766553022323689788098489998
Q ss_pred -------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~p~g~~~~~l~~~l~~~~gI~v~~G~~~~~~~~~RIs~~g~~~t~edI~~ll~alke~L~~~~~~~~~ 388 (388)
T d2ch1a1 321 IPKGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATHPDYIF 388 (388)
T ss_dssp CCTTCCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCTTCCC
T ss_pred CCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999999998513998996788655698899717717899999999999999999961986589
|
| >d2dcfa1 e.3.1.1 (A:5-392) 6-aminohexanoate-dimer hydrolase NylC {Flavobacterium sp. [TaxId: 239]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta-lactamase/transpeptidase-like superfamily: beta-lactamase/transpeptidase-like family: beta-Lactamase/D-ala carboxypeptidase domain: 6-aminohexanoate-dimer hydrolase NylC species: Flavobacterium sp. [TaxId: 239]
Probab=100.00 E-value=0 Score=29245.84 Aligned_cols=1 Identities=0% Similarity=-0.194 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~t~~nw~~~~~~r~~f~~~~~~~pt~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~t~a 80 (388)
T d2dcfa1 1 STGQHPARYPGAAAGEPTLDSWQEPPHNRWAFAHLGEMVPSAAVSRRPVNAPGHALARLGAIAAQLPDLEQRLEQTYTDA 80 (388)
T ss_dssp CCCCCCCSSTTCCTTCSCTTTTTSTTHHHHHTTCGGGTSCCCCCCSCC----CCCEEECTTHHHHCTTHHHHHHHTTEEE
T ss_pred CCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCE
T ss_conf 99888455889523677847864886301205558774884342079888775333212444455433999987428847
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~lV~~~G~iv~E~y~~~~~~~t~~~~~SvtKs~ta~li~~lve~G~l~ldd~v~~ylPe~~~~~~~~iTi~~LL~mtsGl 160 (388)
T d2dcfa1 81 FLVLRGTEVVAEYYRAGFAPDDRHLLMAVSKSLCGTVVGALVDEGRIDPAQPVTEYVPELAGSVYDGPSVLQVLDMQISI 160 (388)
T ss_dssp EEEEETTEEEEEEECTTCCTTCCEECTTHHHHHHHHHHHHHHHTTSCCTTSBGGGTCGGGTTSTTSSCBHHHHHTTCBCC
T ss_pred EEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHCCCCC
T ss_conf 99998998999974699884320148999889999999999734854456752302454404543215677764233677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pg~~f~Y~~~~~~lLg~iie~~tG~~~~~~~~e~i~ 240 (388)
T d2dcfa1 161 DYNEDYVDPASEVQTHDRSAGWRTRRHGDPADTYEFLTTLRGDGSTGEFQYCSANTDVLAWIVERVTGLRYVEALSTYLW 240 (388)
T ss_dssp SCCCCSSCTTSHHHHHHHHHTSSCCCTTCCSSHHHHHHTCCCCSCBSSCCCCHHHHHHHHHHHHHHHCSCHHHHHHHHTG
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHCC
T ss_conf 64234355651355666653101001246188999874067679998789806789999999987517630222333204
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~PlGm~~~~~~~~~~~g~~~~~ggl~~tarDlarfg~l~l~~G~~~g~qils~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 320 (388)
T d2dcfa1 241 AKLDADRDATITVDTTGFGFANGGVSCTARDLARVGRMMLDGGVAPGGRVVSEDWVRRVLAGGSHEAMTDKGFTNTFPDG 320 (388)
T ss_dssp GGTTCSSCCEECBCTTCCBCTTTCEEECHHHHHHHHHHHHTTTEETTEECSCHHHHHHHHHCCCTTTCCCHHHHHHCTTC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 84212222222334567632100323132214577788874885488605649999998568972001245656678999
Q ss_pred -------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------------s 482 (1338)
.
T Consensus 321 ~Yg~~ww~~~~~~~~~~~~G~~GQ~i~vdP~~~lvIV~ls~~~~~~~~~~~~~~~~i~~~i~~~l~av 388 (388)
T d2dcfa1 321 SYTRQWWCTGNERGNVSGIGIHGQNLWLDPLTDSVIVKLSSWPDPDTEHWHRLQNGILLDVSRALDAV 388 (388)
T ss_dssp EEETTEEECCCTTCCEEEEETTTEEEEEEGGGTEEEEEEECCSSSSCHHHHHHHHHHHHHHHHHTSCC
T ss_pred CCCCCEEECCCCCCCEEEECCCCCEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 97864551699997089887789689999069989999599999985468999999999999997229
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=29242.55 Aligned_cols=1 Identities=0% Similarity=-0.161 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
+
T Consensus 1 ~~s~~~~~~~~s~ir~~~~~~~~~~dvi~l~~g~p~~~~p~~v~~~~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~ 80 (388)
T d1gdea_ 1 ALSDRLELVSASEIRKLFDIAAGMKDVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNG 80 (388)
T ss_dssp CHHHHHHHSCCCHHHHHHHHHHHCTTCEECCCCSCCSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 95156410894689999999858998199999889998789999999999855764789985779999999999875133
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~i~~t~G~~~~l~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 160 (388)
T d1gdea_ 81 IEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKT 160 (388)
T ss_dssp CCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTTE
T ss_pred CCCCCHHEEEECCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHCCCCC
T ss_conf 56787020431367535889999986589798998899848899999985998999514556687879999997375687
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR 240 (388)
T d1gdea_ 161 RALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWR 240 (388)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGC
T ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCCCCHHHCCCCCCEEEEEECCHHHCCCCCCC
T ss_conf 59998999698888689999999999999869999997088655333677777656057788089995772433376361
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~G~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~gg~fl 320 (388)
T d1gdea_ 241 LGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFYI 320 (388)
T ss_dssp CEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBTTEE
T ss_pred EEEEEEECCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
T ss_conf 78997302102343211232223333220045789986032036899999999875334566653212566589833799
Q ss_pred -------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------------s 482 (1338)
.
T Consensus 321 ~~~l~~~~~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~~~~~e~l~~al~rL~~~l~e~k~~ 388 (388)
T d1gdea_ 321 FPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVLKERKLV 388 (388)
T ss_dssp CCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred EEECCCCCCCHHHHHHHHHHHCCEEEEECHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99888879999999999998599999810451989999799996499999999999999999961799
|
| >d2py5a2 e.8.1.1 (A:188-575) phi29 DNA polymerase {Bacteriophage phi-29 [TaxId: 10756]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: DNA polymerase I domain: phi29 DNA polymerase species: Bacteriophage phi-29 [TaxId: 10756]
Probab=100.00 E-value=0 Score=29243.43 Aligned_cols=1 Identities=0% Similarity=-1.125 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~t~~s~~~~~fk~~~~~~~~~~~~p~~~~~~~~~ir~~y~GG~~~~~~~~~~~~~~~i~~yD~nSLYPs~M~~~~~p~g~ 80 (388)
T d2py5a2 1 MTAGSDSLKGFKDIITTKKFKKVFPTLSLGLDKEVRYAYRGGFTWLNDRFKEKEIGEGMVFDVNSLYPAQMYSRLLPYGE 80 (388)
T ss_dssp SSHHHHHHHHHHHHHCHHHHHHHSCCCCHHHHHHHHTTCCCCCEEECGGGBTCEECSEEEEEETTHHHHHHHHSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEEECCCCHHHHHHHCCCCCCC
T ss_conf 96307899999999765146540888991477888971217623214544555668548986557239998337899776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d2py5a2 81 PIVFEGKYVWDEDYPLHIQHIRCEFELKEGYIPTIQIKRSRFYKGNEYLKSSGGEIADLWLSNVDLELMKEHYDLYNVEY 160 (388)
T ss_dssp EEEEESSCCCCTTSCEEEEEEEEEEEECTTCCCCCCC-------CCSCCSBCTTSCEEEEEEHHHHHHHHHHEEEEEEEE
T ss_pred CEEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECHHHHHHHHHCCCCEEEEE
T ss_conf 04653614666666770489999822765557766530344677865784668850567873899999995587258888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~f~~~~~~~k~~~~~~~~~kk~~~~~~q~~~KLl~NSlYGk~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (388)
T d2py5a2 161 ISGLKFKATTGLFKDFIDKWTYIKTTSEGAIKQLAKLMLNSLYGKFASNPDVTGKVPYLKENGALGFRLGEEETKDPVYT 240 (388)
T ss_dssp EEEEEEEEESCTTHHHHHHHHHHHHHCCHHHHHHHHHHHHSSHHHHTCCSBCCBEEEEECTTSSEEEEECCCCBCCCCCH
T ss_pred EEEEEECHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHEECCCCCCCCCEEECCCCCEEHHHHHCCCCCCCCCH
T ss_conf 76677212357899999842588774017799999974542441013335655434641443200121210001464431
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~ia~~ita~~r~~~~~~~~~~~~~v~Y~DTDSi~~~~~~~~~~~~~~~~~~~lg~~~~E~~~~~~~~~~~K~Y~~~~~~~ 320 (388)
T d2py5a2 241 PMGVFITAWARYTTITAAQACYDRIIYCDTDSIHLTGTEIPDVIKDIVDPKKLGYWAHESTFKRAKYLRQKTYIQDIYMK 320 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTEEEEETTEEEEESSSCCGGGGGGBCSSSTTSEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEECCCCCHHHHHHHHCHHHHCCCCCCCCCCHHHCCCCCHHHCEEECC
T ss_conf 48899998888889987641488379983636886577621567764245650546301010112116643201457424
Q ss_pred -------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~v~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~d~~~~~~ 388 (388)
T d2py5a2 321 EVDGKLVEGSPDDYTDIKFSVKCAGMTDKIKKEVTFENFKVGFSRKMKPKPVQVPGGVVLVDDTFTIK 388 (388)
T ss_dssp EETTEEEECBTTBCSEEEEEEEETTCCHHHHTTCCTTTCSTTCEEEEEEEEEEETTEEEEEEEEEECC
T ss_pred CCCCCCCCCCCEEECCHHHHHHHCCCHHHHHHHHHHHHCHHHHEEECCEEEEECCCCCEECCCEEECC
T ss_conf 54332233442340152456455231699999987750502411656351177069826524402239
|
| >d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA polymerases {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: DnaQ-like 3'-5' exonuclease domain: Exonuclease domain of family B DNA polymerases species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29242.01 Aligned_cols=1 Identities=0% Similarity=0.305 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~g~~ltr~~~d~~~g~~i~~~~~t~~G~~~v~v~~q~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~~V~~v 80 (388)
T d1q8ia1 1 AQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIPADQVPRAQHILQGEQGFRLTPLALKDFHRQPVYGL 80 (388)
T ss_dssp CEEEEEEEEEEECCTTCBEEEEEEEETTEEEEEECSCBCEEEEEEGGGHHHHHHHTTTCCSEEEEEEEEECTTSCEEEEE
T ss_pred CCCCEEEEEEEEEECCCEEEEEEEECCCCCEEEEECCCCEEEEEECCHHHHHHHHHHHCCCCEECCEEEECCCCCEEEEE
T ss_conf 98623630024771897799999985998879998799679999854567999998547781664322055789779999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 y~~~~~~~r~l~~~l~~~g~~vyEaDI~~~~RfliD~~i~~~~w~~~~~~~~~~~~~~~~~~~~~~P~lkilsfDIE~~~ 160 (388)
T d1q8ia1 81 YCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFITSPVWVEGDMHNGTIVNARLKPHPDYRPPLKWVSIDIETTR 160 (388)
T ss_dssp EESCHHHHHHHHHHHHHTTCCCBSTTCCHHHHHHHHTTCSSEEEEEEEEETTEEEEEEEEECTTCCCCCCEEEEEEEECT
T ss_pred EECCHHHHHHHHHHHHHCCCEEEECCCCHHHEEEEECCCCCCEEEEEECCCCEEECCEEEECCCCCCCCEEEEEEEEECC
T ss_conf 92899999999998862698589768996884899787888858998624661541067566788997359999999747
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~si~l~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~E~~LL~~F~~~i~~~dPDii~GyNi~~FDlpyL~~Ra~~~~ 240 (388)
T d1q8ia1 161 HGELYCIGLEGCGQRIVYMLGPENGDASSLDFELEYVASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYR 240 (388)
T ss_dssp TSCEEEEEEEETTEEEEEEESSCCSCCTTCSSEEEEESSHHHHHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTT
T ss_pred CCCEEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 88667898548998889999567777787855999969999999999999987199889960788878899999999858
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 i~~~lgr~~~~~~~~~~~~~~~~~~~~i~Gr~~lD~~~~~k~~~~~~~sy~L~~Va~~~Lg~~K~~~~~~~~~~~~~~~~ 320 (388)
T d1q8ia1 241 LPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRF 320 (388)
T ss_dssp CCCCCSSSSCCCEEEEECSSSCEEEEEBTTBEEEEHHHHHHHSCCCCSCCCHHHHHHTTC------------CTHHHHHH
T ss_pred CCCHHHHCCCCCEEEECCCCCCCEEEECCEEEEEEHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCC
T ss_conf 87404424772205875655651133020499860268897563043546776755410024455557255589987157
Q ss_pred -------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------------s 482 (1338)
=
T Consensus 321 ~~d~~~l~~Y~~~D~~Lv~~L~~k~~~i~~~~ela~l~g~pl~~~g~s~~~~~~lll~~~~r~g~v~P 388 (388)
T d1q8ia1 321 AEDKPALATYNLKDCELVTQIFHKTEIMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAP 388 (388)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCSCTTTTCCHHHHHHHHHHHHHHHTTBCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHCCEECC
T ss_conf 12489999998999999999999877899999999884979899788499999999999997799587
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=29244.49 Aligned_cols=1 Identities=0% Similarity=-0.427 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~pGP~~~~~~Vl~am~~~~i~HRs~~f~~i~~ea~~~l~~llg~~~~~~ii~~gsgT 80 (388)
T d1h0ca_ 1 HKLLVTPPKALLKPLSIPNQLLLGPGPSNLPPRIMAAGGLQMIGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGH 80 (388)
T ss_dssp CCCSSCCCGGGGSCCCCCCCEECSSSCCCCCHHHHHHHTCCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHH
T ss_pred CCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHH
T ss_conf 98767997676555688767212499988999999975768888789899999999999999996899983899869489
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~a~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~n~tG~i 160 (388)
T d1h0ca_ 81 CALEAALVNVLEPGDSFLVGANGIWGQRAVDIGERIGARVHPMTKDPGGHYTLQEVEEGLAQHKPVLLFLTHGESSTGVL 160 (388)
T ss_dssp HHHHHHHHHHCCSSCCEEECBSSHHHHHHHHHHHHHC--CBCCBCCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEE
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEEECCCCC
T ss_conf 99999999861268740231134301000012211111133333587655216899987616971137874200014445
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~pi~~i~~~~~~~g~~~~vD~~qs~g~~~~d~~~~~~D~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (388)
T d1h0ca_ 161 QPLDGFGELCHRYKCLLLVDSVASLGGTPLYMDRQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLD 240 (388)
T ss_dssp CCCTTHHHHHHTTTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCTTCEEEEECHHHHHHHTTCSSCCSCSTTC
T ss_pred CCHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC
T ss_conf 67999988764025441001112344332112345651220333321468972677750078887544304666432212
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~g~~~~~~~~~~rs~~i~~ 320 (388)
T d1h0ca_ 241 IKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTT 320 (388)
T ss_dssp HHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEE
T ss_pred CCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHCCCEEEE
T ss_conf 00023443210233443556657999988878999997166531000121047778777633753126887773880899
Q ss_pred -------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~p~~~~~~~~~~~L~~~~gI~v~~G~~~~~~~~iRis~~g~~~t~edid~li~aL~~~L~~l~k~~ 388 (388)
T d1h0ca_ 321 VAVPAGYDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNATRENVDRVTEALRAALQHCPKKK 388 (388)
T ss_dssp EECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHSCCC-
T ss_pred EECCCCCCHHHHHHHHHHCCCEEEECCCHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 98899989999999998519989957852204998998477777999999999999999999862569
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=29240.70 Aligned_cols=1 Identities=0% Similarity=-1.058 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~p~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg 80 (388)
T d1erja_ 1 HYLVPYNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATG 80 (388)
T ss_dssp CCCCCTTSSSCTTCCCCHHHHCCCSSSSCTTSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEE
T ss_pred CCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEE
T ss_conf 95687113244147999705765843475322468897089868877762054107607999968999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~ 160 (388)
T d1erja_ 81 CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ 160 (388)
T ss_dssp CBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred ECCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 49948999813640576631665443244321110146778988999988999801213444111121111111111111
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~ 240 (388)
T d1erja_ 161 GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 240 (388)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCC
T ss_conf 11111111011111111112221015654101111110000124544211236887875899738981999634557300
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 320 (388)
T d1erja_ 241 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND 320 (388)
T ss_dssp EEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG
T ss_pred EEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCC
T ss_conf 01024433345778987899997999999999789928987515776432101344420011012455327899988999
Q ss_pred -------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~k~ 388 (388)
T d1erja_ 321 EYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388 (388)
T ss_dssp CEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEEC
T ss_conf 99999969897999999999699999688997899998467425899999999918997999762149
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=100.00 E-value=0 Score=29240.41 Aligned_cols=1 Identities=0% Similarity=-1.856 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 m~~~~~~~~~~~s~~~~i~~~a~~~~~~g~~vi~l~~G~p~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~ 80 (388)
T d1j32a_ 1 MKLAARVESVSPSMTLIIDAKAKAMKAEGIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKL 80 (388)
T ss_dssp CCCCHHHHTSCCCSSTTTHHHHHHHHTTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 94523745399589999999999998779986899997899999899999999998558877899988999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~ 160 (388)
T d1j32a_ 81 QRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAI 160 (388)
T ss_dssp HHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHC
T ss_pred HHHCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHC
T ss_conf 87316577885599868789999999999819989899928981879999998568599983153336678999999727
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~ 240 (388)
T d1j32a_ 161 TPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYA 240 (388)
T ss_dssp CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTT
T ss_pred CCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHCCCCCCCEEEECCCHHHHH
T ss_conf 77874999889999877403535554432011237867972056531034677887888948522156057037705413
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~g 320 (388)
T d1j32a_ 241 MTGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDG 320 (388)
T ss_dssp CTTTCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCB
T ss_pred CCHHHEEEEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCC
T ss_conf 60657599998899999998766521245668999887632445099999999999999999999998479978668993
Q ss_pred -------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 g~~l~~~l~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls~~~~~e~l~~al~rl~~~l~~l~ 388 (388)
T d1j32a_ 321 AFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYATDLDTIKRGMERLEKFLHGIL 388 (388)
T ss_dssp TTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHC
T ss_conf 68999988887999999999999869999981643599996999983899999999999999999859
|
| >d1ku0a_ c.69.1.18 (A:) Lipase L1 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase L1 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=0 Score=29239.15 Aligned_cols=1 Identities=0% Similarity=0.305 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~yPIVLvHGl~Gf~~~~l~~~~YW~G~~~~I~~~L~~~G~~V~~~~V~p~~S~~~RA~eL~~~I~~~~~d~G~~ 80 (388)
T d1ku0a_ 1 ASPRANDAPIVLLHGFTGWGREEMLGFKYWGGVRGDIEQWLNDNGYRTYTLAVGPLSSNWDRACEAYAQLVGGTVDYGAA 80 (388)
T ss_dssp CCCCCCCCCEEEECCSSCCCTTSGGGCCTTTTTTCCHHHHHHHTTCCEEECCCCSSBCHHHHHHHHHHHHHCEEEECCHH
T ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98877999889818866677544676214678536468999858978998516986678999999999986345453376
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 hs~~~~~~~~~r~y~g~~~~~~~~~kVnLIgHS~GGld~Ryl~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~SvTT 160 (388)
T d1ku0a_ 81 HAAKHGHARFGRTYPGLLPELKRGGRVHIIAHSQGGQTARMLVSLLENGSQEEREYAKEHNVSLSPLFEGGHRFVLSVTT 160 (388)
T ss_dssp HHHHHTSCSEEEEECCSCGGGGGTCCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHTCCCCGGGTCCCCCEEEEEE
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 77652302237567220003366786358604554587999999702356432222212344333223567750688885
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 IsTPH~GS~~AD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~~es~~~~~~~~~~s~~~~~~~~a 240 (388)
T d1ku0a_ 161 IATPHDGTTLVNMVDFTDRFFDLQKAVLEAAAVASNAPYTSEIYDFKLDQWGLRREPGESFDHYFERLKRSPVWTSTDTA 240 (388)
T ss_dssp ESCCTTCCGGGGSTTHHHHHHHHHHHHHHHHHHHTTSCGGGCCCCCCBGGGTBCCCTTCCHHHHHHHHHTSHHHHSSSBH
T ss_pred CCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHH
T ss_conf 05788986366542346652147889998876403542110002466653343457651099999988538876666401
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~dLtt~g~~~fN~~~~~~p~v~Y~S~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~NDGlV 320 (388)
T d1ku0a_ 241 RYDLSVPGAETLNRWVKASPNTYYLSFSTERTYRGALTGNYYPELGMNAFSAIVCAPFLGSYRNAALGIDSHWLGNDGIV 320 (388)
T ss_dssp HHHHSHHHHHHHHHHCCCCTTSEEEEEEECCEEECTTTCCEEECTTSCHHHHHHTHHHHTTCCBGGGTBCGGGCCBSSSS
T ss_pred HHHCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 03106599999733357899846777785143345777632224444454334557545553346532137679988865
Q ss_pred -------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~v~S~~~g~~~~~~~~~~~~~~i~~G~W~~~~~~~~DHld~iG~~~~~~~~~~~~Y~~~a~~L~~l~~ 388 (388)
T d1ku0a_ 321 NTISMNGPKRGSNDRIVPYDGTLKKGVWNDMGTYNVDHLEVIGVDPNPSFNIRAFYLRLAEQLASLRP 388 (388)
T ss_dssp BGGGSSSCCTTCCCCEEECCSSCCBTSEEEEEEESCCTTGGGTSSCCTTSCHHHHHHHHHHHHHTCCC
T ss_pred CHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 88557587056777543345654455011036547649997388987877999999999999843999
|
| >d1x38a1 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: NagZ-like domain: Beta-D-glucan exohydrolase, N-terminal domain species: Barley (Hordeum vulgare) [TaxId: 4513]
Probab=100.00 E-value=0 Score=29244.97 Aligned_cols=1 Identities=100% Similarity=0.770 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~y~d~~~~~e~Rv~dLl~~MTleEKigQl~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~lq~~ 80 (388)
T d1x38a1 1 DYVLYKDATKPVEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSVPRKGATAKEWQDMVDGFQKA 80 (388)
T ss_dssp CCCGGGCTTSCHHHHHHHHHTTCCHHHHHHHTEEEEGGGCCHHHHHHTTCCEEEECTTCCSSTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99876889999999999999877999999613064445688788985256616636876667898999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~giPlli~~D~e~G~~~~~~~t~~p~~~~~aat~d~~l~~~~g~~~g~E~ra~Gin~~~aPv~Dv~~~p~~gr~~ 160 (388)
T d1x38a1 81 CMSTRLGIPMIYGIDAVHGQNNVYGATIFPHNVGLGATRDPYLVKRIGEATALEVRATGIQYAFAPCIAVCRDPRWGRCY 160 (388)
T ss_dssp HHTSSSCCCCEEEECCSSSSTTSTTCCCCCCHHHHHHHTCHHHHHHHHHHHHHHHHHTTCCEECCCBCCCCSCTTSTTGG
T ss_pred HHHCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 87436898836633655675235664210033311025897999999998657887448763367763534564446556
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 et~geDp~l~~~~~~~v~~~~g~~~~~~~~G~~~~~~~~gV~a~~KHFpG~g~~~~~~~~~~~~i~~~~l~~~~l~pf~~ 240 (388)
T d1x38a1 161 ESYSEDRRIVQSMTELIPGLQGDVPKDFTSGMPFVAGKNKVAACAKHFVGDGGTVDGINENNTIINREGLMNIHMPAYKN 240 (388)
T ss_dssp GSSCSSHHHHHHGGGHHHHHHCCCCTTCCTTCCCCCSTTSCBCEEEEETTGGGCGGGCTTCEECCCHHHHHHHTSHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 67667889999988653664110135430122223455674213314436886646740334530488899886145577
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~i~~g~~~vM~s~~~~~g~pa~~s~~~l~~lLR~~~gF~G~VvSD~~~m~~~~~~~~~~~~~~~~~a~~ag~d~~~~~~~ 320 (388)
T d1x38a1 241 AMDKGVSTVMISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGIDRITTPAGSDYSYSVKASILAGLDMIMVPNK 320 (388)
T ss_dssp HHHTTCCEEEECSSEETTEEGGGCHHHHCCCCCTTSCCCSEEECCTTTTGGGSSSTTTTHHHHHHHHHHHTCCBEECCSC
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCHHHCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCC
T ss_conf 77605651223422357756657999999998730599752424221023312356775789999998517881347853
Q ss_pred -------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------------s 482 (1338)
|
T Consensus 321 ~~~~~~~l~~av~~G~i~~~rid~sv~Ril~~k~~lGlfd~p~~~~~~~~~i~~~~h~~~a~~aA~~S 388 (388)
T d1x38a1 321 YQQFISILTGHVNGGVIPMSRIDDAVTRILRVKFTMGLFENPYADPAMAEQLGKQEHRDLAREAARKS 388 (388)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHTTTTTCCSCCGGGGGGTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 89999999999985998999999999999999999489988877824544069999999999999639
|
| >d1zeea1 a.266.1.2 (A:6-392) Hypothetical protein SO4414 {Shewanella oneidensis [TaxId: 70863]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Indolic compounds 2,3-dioxygenase-like superfamily: Indolic compounds 2,3-dioxygenase-like family: Indoleamine 2,3-dioxygenase-like domain: Hypothetical protein SO4414 species: Shewanella oneidensis [TaxId: 70863]
Probab=100.00 E-value=0 Score=29176.68 Aligned_cols=1 Identities=0% Similarity=-1.390 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~d~wir~~f~~~n~~le~~y~~~~~~~~~~~~g~~~k~~l~~~g~~~i~~ll~egntdegf~~~f~llgnvg~ym 80 (387)
T d1zeea1 1 YNTEAFDEWIRSRFVELNSQLEQLYYQQTDRANVQEVGTELKHTLESEGRELVKALLDEGNTDEGFDSAFDLLGNVGLYM 80 (387)
T ss_dssp CHHHHHHHHHHTHHHHHHHHHHHHHHHSSSSSCCSSSCHHHHHHHHHHHHHHHHTTTTTSSSCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 96678889999999998799999997477732342000899999999889999999966785231799999975158999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~acrrh~i~ep~re~~~p~~eas~la~~~~as~gv~prf~~~hl~~hn~a~~~~~k~ft~l~de~~f~~~nt~~~~a~~~ 160 (387)
T d1zeea1 81 AACRRHEITEPTRETTSPLLEASALAMHIGASIGVTPRFATAHLTTHNRAHNGIYKRFTDLPDEKLFVDYNTKGILAYKR 160 (387)
T ss_dssp HHHHHTTSSCTTTCSSCSCHHHHHHHHHHHHHHTSCSSCCHHHHTTTCCEETTEECCSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99874267785301368414437999988886399923566666315665410676305883578999875799999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 a~~~l~~~~~lgi~hp~~~~ll~~~~~aLq~v~~sn~~l~~~ld~~~Ff~~vRPyykP~rVG~q~YrG~sAgqsa~I~vl 240 (387)
T d1zeea1 161 ASDALLKIQPLGISHPISHDLLRVTKQALQDVIESNQQLFNRLDTDRFFYCVRPYYKPYRVGSVVYRGANAGDFAGINVI 240 (387)
T ss_dssp HHHHHHTTTTTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHTGGGGCCEEETTEEECCCCTTCSHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHCCCEEECCCCHHHCCCHHHH
T ss_conf 99998764287899754899999999999999999999998439999899856312543237751079971201008999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 D~LLGvcha~dP~ysqfL~dmr~YMPP~hra~L~d~~r~PSl~d~vLsa~~~~~~~~y~~nL~aflevC~~hg~afR~hH 320 (387)
T d1zeea1 241 DLTLGLCFANEASYSQMLVDKFLYMMPEDQQILRECMRRPNLMDDFLQAKGCIHQDWYQENLKLFIEVCELHGQTAIQHH 320 (387)
T ss_dssp HHHTTSSCTTSHHHHHHHHTTGGGSCHHHHHHHHHHTTSCCHHHHHHHTGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99975563799409999999986179789999999863871689998635650038999999999999999999999999
Q ss_pred ------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------9
Q 000711 482 ------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 lQlV~KYI~~pS~~~~~q~~~~lTaSGPpl~vLLk~LkKLRD~R~AA~r~Di~tr~~d~~~l~~~l~ 387 (387)
T d1zeea1 321 NELVTKYIAEPSVSMEQQHLAKVTASGPPLHVLLASLERLRDRRAAVLRDDIRTRYYDLKKLKDSLR 387 (387)
T ss_dssp HHHTSCC------------------------CCHHHHHHHHHHHTTCCCSSSCCTHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
T ss_conf 9999999972887434266566447899807899999998665542031137763999999998609
|
| >d2aepa1 b.68.1.1 (A:83-469) Influenza neuraminidase {Influenza A virus, different strains [TaxId: 11320]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Influenza neuraminidase species: Influenza A virus, different strains [TaxId: 11320]
Probab=100.00 E-value=0 Score=29176.32 Aligned_cols=1 Identities=0% Similarity=-0.858 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 e~~n~t~plC~i~gfa~~sKDN~iR~g~~g~i~V~REPyVSC~p~eCr~FaL~QGa~l~~kHsNGTi~DRsp~R~L~s~~ 80 (387)
T d2aepa1 1 EYRNWSKPQCKITGFAPFSKDNSIRLSAGGDIWVTREPYVSCDPDKCYQFALGQGTTLNNRHSNDTVHDRTPYRTLLMNE 80 (387)
T ss_dssp CCCCCCSCBCCCSEEEEEEECCHHHHHTTSCCEEEEEEEEEECSSCEEEEEEEEEEESSSGGGTTCCCSCCTTCEEEEEE
T ss_pred CCCCCCCCCCCCCCEEEEECCCCEEECCCCCEEEEECCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHEEEECC
T ss_conf 95546676675343046763662575378866998266020284401357631321027866688426654101035513
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 lG~P~~~~s~~~~vaWSsssCHDGk~wl~I~vtG~D~nA~A~i~Y~g~~tdti~SW~~nILRTQESeCvCinG~C~vvmT 160 (387)
T d2aepa1 81 LGVPFHLGTKQVCIAWSSSSCHDGKAWLHVCVTGHDENATASFIYDGRLVDSIGSWSKKILRTQESECVCINGTCTVVMT 160 (387)
T ss_dssp TTCCCCTTCEEEEECSEEEEEECSSCEEEEEEESCTTSCEEEEEETTEEEEEEECSSSSCCBCCSSCCEEETTEEEEEEE
T ss_pred CCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCEEEEEEECCEEEEHHHHHHHHHCCCCCCCEEEECCEEEEEEE
T ss_conf 67997558657899863243468862489987768888089999899985326544430120042204898998899992
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 DG~A~~~A~~ri~~i~eGkIik~~~l~g~~~HiEECSCYp~~~~V~CvCRDNW~GsNRP~v~in~~~~~~~~~YvCsg~~ 240 (387)
T d2aepa1 161 DGSASGRADTKILFIEEGKIVHISPLSGSAQHVEECSCYPRYPGVRCVCRDNWKGSNRPIVDINVKDYSIVSSYVCSGLV 240 (387)
T ss_dssp EECSSSCEEEEEEEEETTEEEEEEECCSSCCCCEEEEEEEETTEEEEEEECCSSCSSCEEEEECTTTCCEEEEECCCSSC
T ss_pred CCCCCCCCEEEEEEEECCEEEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCEEEECCHHCEEEEEEEECCCC
T ss_conf 68878853068999845638877606888673276330379982699970688877897499540022045305753644
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~DTpRp~D~s~~g~C~~p~~~~G~~GVKGf~F~~Gn~vW~GRTiS~~sRsGfE~~~v~~gwt~~~Sk~~~~~q~iV~n~n 320 (387)
T d2aepa1 241 GDTPRKNDSSSSSHCLNPNNEEGGHGVKGWAFDDGNDVWMGRTISEKFRSGYETFKVIEGWSKPNSKLQINRQVIVDRGN 320 (387)
T ss_dssp CCSSCCCTTTCCCCSSSCCCSSCSSCCCCCEEEETTEEEEEECSSSSSSEEEEEEEETTTTTSTTCCCEEEEEEEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCEEEEEEEECCC
T ss_conf 78999888776655658888888886163368658973876532376677616999458875878634111479995588
Q ss_pred ------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------9
Q 000711 482 ------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 wSGYSGsF~~~~k~C~~pCF~VElIRGrp~E~~v~WTS~S~v~fCG~~~~~~~~swpDGA~i~~mp~ 387 (387)
T d2aepa1 321 RSGYSGIFSVEGKSCINRCFYVELIRGRKQETEVWWTSNSIVVFCGTSGTYGTGSWPDGADINLMPI 387 (387)
T ss_dssp ECCCEEEEEEECSSSEEEEEEEEEEEETTTCTTSSCEEEEEEEEEEESSCCCCCCCCCCCCGGGSCC
T ss_pred CCCCEEEEEECCCCCCCEEEEEEEEECCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 7752257996899842002899996078764505785187799936789867866899766676669
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=29172.78 Aligned_cols=1 Identities=0% Similarity=-0.227 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~l~~~~~~l~~~a~~g~ld~~~gr~~ei~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~ 80 (387)
T d1qvra2 1 TYNALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKR 80 (387)
T ss_dssp CCSHHHHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCE
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCHHHCCCE
T ss_conf 93779999798899998599998748089999999998248899976879999889999999999998089997886966
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 i~~ld~~~l~ag~~~~g~~e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg~~~~I~~tT~ 160 (387)
T d1qvra2 81 IVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTL 160 (387)
T ss_dssp EEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECH
T ss_pred EEEEEHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCH
T ss_conf 89955766652667413689999999998505899669872408888427778774138999999973788516663689
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~ey~~~e~d~al~rrF~~v~v~ep~~~~~~~il~~~~~~~e~~h~v~~~~~ai~~~v~ls~ryi~~r~~PdKAidlld~a 240 (387)
T d1qvra2 161 DEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEA 240 (387)
T ss_dssp HHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99987633679998246112799867889999999999987404774669999999985023666566704688999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~a~~~i~~~s~P~el~~ler~I~qLe~E~~aL~ke~d~~s~~rl~~le~el~~lee~~~~L~~~w~~ek~~l~~i~~Lk~ 320 (387)
T d1qvra2 241 AARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQH 320 (387)
T ss_dssp HHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998641589588999999999999999998740145788887653323567999999999999888879999999999
Q ss_pred ------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------9
Q 000711 482 ------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~Le~lr~~le~A~r~gd~e~AaeL~y~~ip~le~el~~l~~~~~~~~lvr~~VteedIA~VVSrWTG 387 (387)
T d1qvra2 321 RLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDIAEIVSRWTG 387 (387)
T ss_dssp HHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHSSSCSSCCSEECHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 9999999999999764688788875250799999999999873579877686398999999976109
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=29169.41 Aligned_cols=1 Identities=0% Similarity=-0.959 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~~~~~~~y~~~p~~i~ra~G~~l~d~dG~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~~~~~~~~~~~~~~~ 80 (387)
T d1vefa1 1 WRALLEAEKTLDSGVYNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPTPM 80 (387)
T ss_dssp CHHHHHHHHHHBCSCSCCCSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTSCCHH
T ss_pred CHHHHHHHHHCCCCCCCCCCCEEEEEECCEEEECCCCEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 96688606531489878898318984749999798799998464187665528969999999999976364666557705
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~la~~l~~~~~~~~~~v~f~~sGseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~ 160 (387)
T d1vefa1 81 RGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVE 160 (387)
T ss_dssp HHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEE
T ss_pred HHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCE
T ss_conf 99999876530232101111246726799999999876113312325656889996123863478655678878899826
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~p~~d~~~l~~~~~~~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~v~PD 240 (387)
T d1vefa1 161 FIPYNDVEALKRAVDEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPD 240 (387)
T ss_dssp EECTTCHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS
T ss_pred EECCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 86889799999756897479999787788888649989999999999976926984002224674677765446783776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 i~~~gK~l~gG~~~~~~~~~~~~~~~~~~~~~g~T~~gnPla~aaa~a~L~~l~~~~~~~~v~~~g~~l~~~L~~l~~~~ 320 (387)
T d1vefa1 241 ILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPSPK 320 (387)
T ss_dssp EEEECGGGGTTSSCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTSCCTT
T ss_pred EEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 33313257887666332221023102236883553799863001011200010333222057665078999998617984
Q ss_pred ------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------9
Q 000711 482 ------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------------------------s 482 (1338)
|
T Consensus 321 v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~g~l~~~~g~~~ir~~Ppl~it~~~ld~~~~~i~~aLS 387 (387)
T d1vefa1 321 IREVRGMGLMVGLELKEKAAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVLA 387 (387)
T ss_dssp EEEEEEETTEEEEEESSCSHHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred EEEEEECCEEEEEEEECCCHHHHHHHHHHCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf 5788521469999982774699999999789759933899899979713999999999999999859
|
| >d1zsqa2 c.45.1.3 (A:199-585) Myotubularin-related protein 2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: (Phosphotyrosine protein) phosphatases II superfamily: (Phosphotyrosine protein) phosphatases II family: Myotubularin-like phosphatases domain: Myotubularin-related protein 2, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=29168.67 Aligned_cols=1 Identities=0% Similarity=-0.127 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~edGW~~yd~~~E~~RlGl~~~~WRiS~iN~~Y~lC~SYP~~lVVP~~isD~~l~~~a~fr~~~R~Pvl~w~~~~~~ 80 (387)
T d1zsqa2 1 EVFPENGWKLYDPLLEYRRQGIPNESWRITKINERYELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVLSWIHPESQ 80 (387)
T ss_dssp CCCSSCGGGSCCHHHHHHHTTCSCSSEEEECTTTTSSSCTTSCSSEEEETTCCHHHHHHHHHHBGGGCCCEEEEECTTTC
T ss_pred CCCCCCCHHHCCHHHHHHHCCCCCCCEEEEEECCCCEECCCCCCCEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 98788763235889999863899888788542699704588998169828589999999987636997607988759998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 a~L~RssqP~~g~~~~r~~ede~~l~~i~~~~~~~~~~~I~D~Rp~~na~an~~~ggG~E~~~~Y~~~~~~f~~i~nih~ 160 (387)
T d1zsqa2 81 ATITRCSQPMVGVSGKRSKEDEKYLQAIMDSNAQSHKIFIFDARPSVNAVANKAKGGGYESEDAYQNAELVFLDIHNIHV 160 (387)
T ss_dssp CEEEEECCBCCTTTTCCCHHHHHHHHHHHHHSSSCSSEEEEECSCHHHHHHHHHHTCCCCCTTTCTTEEEEECCCCCHHH
T ss_pred CEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHCCCCCCCHHCCCCCEEEEECCCCHHH
T ss_conf 36885178577756787689999999999737776753555477414688752248986552105675245304665278
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 vr~s~~kl~~~~~~~~~~~~~~s~le~s~WL~~i~~~L~~A~~ia~~l~~~~~sVlVh~sdGwD~T~qvsSL~ql~lDpy 240 (387)
T d1zsqa2 161 MRESLRKLKEIVYPNIEETHWLSNLESTHWLEHIKLILAGALRIADKVESGKTSVVVHSSDGWDRTAQLTSLAMLMLDGY 240 (387)
T ss_dssp HHHHHHHHHHHHSSCCCGGGHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCCEEEECSSSSSHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999999998558875466775243444499999999999999999970897399857888752489999999973832
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 yRTi~GF~~LIekewi~~Gh~F~~R~~h~~~~~~~~e~sPvFl~FLDcV~ql~~q~P~~FEF~e~~L~~l~~h~~s~~fg 320 (387)
T d1zsqa2 241 YRTIRGFEVLVEKEWLSFGHRFQLRVGHGDKNHADADRSPVFLQFIDCVWQMTRQFPTAFEFNEYFLITILDHLYSCLFG 320 (387)
T ss_dssp GGSHHHHHHHHHHHTTTTTCCHHHHHTTTCCCTTCTTCCCHHHHHHHHHHHHHHHCTTTCSBCHHHHHHHHHHHHHCSSS
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 11188899999988873378632342678777566777985699999999998749740112799999999986026646
Q ss_pred ------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------9
Q 000711 482 ------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------------------------s 482 (1338)
=
T Consensus 321 tFl~n~e~eR~~~~~~~~t~Slw~~~~~~~~~f~N~~Y~~~~~~~l~P~~~~~~~~~W~~~ylR~~p 387 (387)
T d1zsqa2 321 TFLCNSEQQRGKENLPKRTVSLWSYINSQLEDFTNPLYGSYSNHVLYPVASMRHLELWVGYYIRWNP 387 (387)
T ss_dssp TTCSSSHHHHHHTTHHHHSCCHHHHHHTCGGGGBCTTTTSCSSSCCCCCCSTTTCCCCHHHHTCSCC
T ss_pred CCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCEEHHHHCCCCCC
T ss_conf 4555899999871768787369999987599855978788999857033675667426753335587
|
| >d1bxba_ c.1.15.3 (A:) D-xylose isomerase {Thermus aquaticus, subsp. Thermophilus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: Xylose isomerase domain: D-xylose isomerase species: Thermus aquaticus, subsp. Thermophilus [TaxId: 271]
Probab=100.00 E-value=0 Score=29166.77 Aligned_cols=1 Identities=0% Similarity=-1.025 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~p~~~~~f~~~~W~~~~~g~dpfg~~~~~~~~~~~~~~~~~~lg~~~~~fHd~d~~p~~~~~~e~~~~~~~~k~~~~~ 80 (387)
T d1bxba_ 1 MYEPKPEHRFTFGLWTVGNVGRDPFGDAVRERLDPVYVVHKLAELGAYGVNLHDEDLIPRGTPPQERDQIVRRFKKALDE 80 (387)
T ss_dssp CCCCCGGGCEEEEHHHHTCCCCBTTBCCCSCCCCHHHHHHHHHHHTCSEEEEEHHHHSCTTCCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 99998766147997235787889988543112788999999984499878516665588899878999999999998641
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~Gl~~~~~t~nlf~~~~~~~Gs~t~pD~~vR~~Ai~~~k~~id~a~~LGa~~~vlW~G~dG~~~~~~~d~~~~~~~~~e~ 160 (387)
T d1bxba_ 81 TGLKVPMVTANLFSDPAFKDGAFTSPDPWVRAYALRKSLETMDLGAELGAEIYVVWPGREGAEVEATGKARKVWDWVREA 160 (387)
T ss_dssp HTCBCCEEECCCSSSGGGGGCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCCEEEECCTTCEESCGGGCGGGTHHHHHHHH
T ss_pred CCCCEEEECCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 68721122454355623324764689889999999999999999998499979975787766776306799999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 l~~v~~~a~~~g~~~~i~iEpkP~EP~~~~~~~~~~~~l~~~~~~g~~~~~gl~lD~~H~~l~g~~~~~~v~~a~~~gkL 240 (387)
T d1bxba_ 161 LNFMAAYAEDQGYGYRFALEPKPNEPRGDIYFATVGSMLAFIHTLDRPERFGLNPEFAHETMAGLNFVHAVAQALDAGKL 240 (387)
T ss_dssp HHHHHHHHHHHTCCCEEEECCCSSSSSSEESSCSHHHHHHHHTTSSSGGGEEECCBHHHHHHTTCCHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCHHEEECCCCCHHHHCCCCHHHHHHHHHHHCCE
T ss_conf 99999977750788379995168988544214889999999998377020754123044530487668899999983964
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 g~vh~Nd~~~~~~D~DL~~g~~~~~~~~~~~~~L~~~gy~G~~~fD~~~~r~~~~~~l~~~~~~~m~~~a~ll~~a~~l~ 320 (387)
T d1bxba_ 241 FHIDLNDQRMSRFDQDLRFGSENLKAAFFLVDLLESSGYQGPRHFDAHALRTEDEEGVWAFARGCMRTYLILKERAEAFR 320 (387)
T ss_dssp CCEECCBCCSSSSCCCBCTTSSCHHHHHHHHHHHHHTTCCSCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 15574777777887666888621889999999998458876433134567788500689999999999999999999988
Q ss_pred ------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------9
Q 000711 482 ------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~d~~~~~~l~ary~~~~a~~~~~~~~~~~~~~~l~~~~~~~~a~~~~s~~qE~Le~l~n~~i~g~~~ 387 (387)
T d1bxba_ 321 EDPEVKELLAAYYQEDPAALALLGPYSREKAEALKRAELPLEAKRRRGYALERLDQLAVEYLLGVRG 387 (387)
T ss_dssp TCHHHHHHHHHHTCCCHHHHTTSSSCCSHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHTTCCC
T ss_pred HCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf 6768999999987212442201100145679984476678431432672499999999999862369
|
| >d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: beta-secretase (memapsin) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=29164.31 Aligned_cols=1 Identities=0% Similarity=-1.424 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~l~~~~~~~Y~~~i~IGtP~Q~~~li~DTGSs~lWv~~~~c~~~~~~f~~~~SsT~~~~~~~~~i~Y~~g~~~G 80 (387)
T d2qp8a1 1 FVEMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRKGVYVPYTQGKWEG 80 (387)
T ss_dssp CTTTTTCEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCCTTCSCCCCGGGCTTCEEEEEEEEEECSSCEEEE
T ss_pred CCCHHHCCCCCCCCEEEEEEEECCCCEEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCEECCCCEEEEECCCCEEE
T ss_conf 92133025589999899999988999799999989961048926898767881583028871757981899968960999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~D~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~~~l~~~~~~~~~fs~~l~~~~ 160 (387)
T d2qp8a1 81 ELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAG 160 (387)
T ss_dssp EEEEEEEECTTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHSCCCSCEEEEECCCS
T ss_pred EEEEEEEEECCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEECCCC
T ss_conf 99999999847773367478999982477621134556622334564435788778537888626574215767632455
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~G~l~~Gg~d~~~~~g~~~~~~~~~~~~~~v~~~~i~v~g~~~~~~~~~~~~~~aiiDSGts~i~lp~ 240 (387)
T d2qp8a1 161 FPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPK 240 (387)
T ss_dssp SCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECCSBTTBBCCEEEEEETTEECCCCGGGGGSSCEEECTTCCSEEEEH
T ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEECCCCCCEEEEEEEEEEECCEECCCCCCCCCCCCEEEECCCCEEECCH
T ss_conf 44456644457784467456233334573586314543336899879999999656654567764169816997086889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~fp~~~~~~~~~~~~~~~~~~i~p~~y~~~~~~~~~~~~~ 320 (387)
T d2qp8a1 241 KVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDD 320 (387)
T ss_dssp HHHHHHHHHHHHHTTTSCCCHHHHTTCSCEEESTTCCCGGGSCCEEEEEECSSTTEEEEEEECHHHHEEEECCTTCCSCE
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCEEEEEECHHHHEEECCCCCCCCCE
T ss_conf 99999999856001465567754453156410038986421340578866621233079998879911551356786766
Q ss_pred ------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------9
Q 000711 482 ------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 c~~~~~~~~~~~~ILG~~Flr~~y~vfD~~~~~IGfA~a~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (387)
T d2qp8a1 321 CYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEGPFVTLDMEDCGYN 387 (387)
T ss_dssp EEEECEEEESSCEEECHHHHTTEEEEEETTTTEEEEEEETTCCCCSSCCCEEEEEEECCCGGGGSCC
T ss_pred EEEEEECCCCCCEEEHHHHHCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCC
T ss_conf 8998707999977970894286899998999999999778687788131256798888984652789
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=100.00 E-value=0 Score=29163.87 Aligned_cols=1 Identities=0% Similarity=-1.025 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~p~~g~W~~~~~~p~~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~ 80 (387)
T d1k3ia3 1 YTAPQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPG 80 (387)
T ss_dssp CCCCCTTSCEEEEEEECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCEEECCCCCCCCCCCEEE
T ss_conf 98788978716786889861017899925999999984057666788776068999988889686667789874452568
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~ 160 (387)
T d1k3ia3 81 ISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT 160 (387)
T ss_dssp EEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred EEEECCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCEEEEECCCCCCEE
T ss_conf 99946886898636888621675675574421565664210130355317826652136633354320566348889551
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (387)
T d1k3ia3 161 SLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYD 240 (387)
T ss_dssp EETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEE
T ss_pred ECCCCCCCCCCCCCCCCEEECCCEEEEEEECCCCEEEECCCCCCEEECCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 15887644311346651365042269997079877874686774781486667173166556676657632226378861
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~ 320 (387)
T d1k3ia3 241 AVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPV 320 (387)
T ss_dssp TTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBC
T ss_pred CCCCCEEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCEE
T ss_conf 35882478875367887752100000111113567884060366566543433566058749998884567668899470
Q ss_pred ------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------9
Q 000711 482 ------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~~~~~~~~~~~~~e~y~Ppyl~~~~ 387 (387)
T d1k3ia3 321 FTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTPNYLYNSN 387 (387)
T ss_dssp CCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCTTCSCCCCEEEEEECGGGBCTT
T ss_pred CEEEEEECCCCEEEECCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCHHCCCCC
T ss_conf 1079897999918878899975531279999889999999698767888661148998260405898
|
| >d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis [TaxId: 1402]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-1,4-galactanase species: Bacillus licheniformis [TaxId: 1402]
Probab=100.00 E-value=0 Score=29166.24 Aligned_cols=1 Identities=100% Similarity=1.268 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
|
T Consensus 1 ~~~~~~~~~~~~~f~~g~d~s~~~~~e~~g~~~~~~~g~~~d~~~~lk~~G~n~VRl~vw~~~~~~~~~~~~~g~~~l~~ 80 (387)
T d1ur4a_ 1 GLYVEKVSGLRKDFIKGVDVSSIIALEESGVAFYNESGKKQDIFKTLKEAGVNYVRVRIWNDPYDANGNGYGGGNNDLEK 80 (387)
T ss_dssp CCCCCCCTTCCTTCEEEEECTTHHHHHHTTCCCBCTTSCBCCHHHHHHHTTCCEEEEEECSCCBCTTCCBCSTTCCCHHH
T ss_pred CCCCCCCCCCCHHCEEEEECHHHHHHHHCCCEEECCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHH
T ss_conf 95223578998100777861068999867977889999710599999983998799404447743335767776242999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~a~~~Gl~v~ldlH~sd~wadp~~q~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eigNE~~~~~ 160 (387)
T d1ur4a_ 81 AIQIGKRATANGMKLLADFHYSDFWADPAKQKAPKAWANLNFEDKKTALYQYTKQSLKAMKAAGIDIGMVQVGNETNGGL 160 (387)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSSSCCSSSCCCCCGGGTTCCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEESSSCSSCB
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
T ss_conf 99999999987997999867787776877777850321322047999999999999998863699812799724888674
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~ll~~~~~avr~~dp~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~d~ig~s~Y~~w~~~~~~~~~~l~~ 240 (387)
T d1ur4a_ 161 AGETDWAKMSQLFNAGSQAVRETDSNILVALHFTNPETSGRYAWIAETLHRHHVDYDVFASSYYPFWHGTLKNLTSVLTS 240 (387)
T ss_dssp TTBCCHHHHHHHHHHHHHHHHHHCTTSEEEEEECCTTSTTHHHHHHHHHHHTTCCCSEEEEEECTTTSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHHHHHHHH
T ss_conf 67688999999999999998730887527872267653277889999998659876400202312347608999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 l~~~~~k~v~v~E~~~~~t~~~~d~~~~~~~~~~~~~~~p~s~~gQ~~~l~~l~~~~~~~~~~G~G~~YWep~w~~~~~~ 320 (387)
T d1ur4a_ 241 VADTYGKKVMVAETSYTYTAEDGDGHGNTAPKNGQTLNNPVTVQGQANAVRDVIQAVSDVGEAGIGVFYWEPAWIPVGPA 320 (387)
T ss_dssp HHHHHCCEEEEEEECCCSCSCCSSSSCCSSSCTTSCCCSCSSHHHHHHHHHHHHHHHHTTCTTEEEEEEECTTCCCSSCG
T ss_pred HHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC
T ss_conf 99983996389985044347786444765787633356777899999999999999985478805999735763136777
Q ss_pred ------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------9
Q 000711 482 ------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~w~n~aLFd~~g~~l~~l~~f~~~~~~~~~ 387 (387)
T d1ur4a_ 321 HRLEKNKALWETYGSGWATSYAAEYDPEDAGKWFGGSAVDNQALFDFKGRPLPSLHVFQYVDTGTPF 387 (387)
T ss_dssp GGHHHHHHHHHHHCCSSBCGGGTTTCTTTHHHHCBSCSCGGGCSBCTTSCBCGGGGHHHHHHHCCC-
T ss_pred CCCCCCHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC
T ss_conf 6543450345412642032213324641123456777411210335589867577877413478999
|
| >d2ex0a1 c.87.1.9 (A:26-412) Alpha-2,3/2,6-sialyltransferase/sialidase {Pasteurella multocida [TaxId: 747]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Sialyltransferase-like domain: Alpha-2,3/2,6-sialyltransferase/sialidase species: Pasteurella multocida [TaxId: 747]
Probab=100.00 E-value=0 Score=29172.39 Aligned_cols=1 Identities=0% Similarity=-1.058 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ktlEvYvD~AsLPslqqlm~iiq~ne~~~n~rli~w~R~~i~d~~l~~~~n~~F~~~~~n~~~~~~~~il~~~~~~~~in 80 (387)
T d2ex0a1 1 KTITLYLDPASLPALNQLMDFTQNNEDKTHPRIFGLSRFKIPDNIITQYQNIHFVELKDNRPTEALFTILDQYPGNIELN 80 (387)
T ss_dssp EEEEEEEESSSHHHHHHHHHHHHTTTCSSSCEEEEETTCCCCHHHHTTCSSEEECCEETTEECTHHHHHHTTCCSCEEEE
T ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHEEECCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 95699954355615999999986046778821577742368778987301021354457895299999997174433799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 i~~Nt~hS~d~~~~I~~~~~~~~~kv~i~~L~lYDDGSaEYV~l~~~k~~d~~~~~~~~~~~l~~~l~~Gt~~~~n~~~~ 160 (387)
T d2ex0a1 81 IHLNIAHSVQLIRPILAYRFKHLDRVSIQQLNLYDDGSMEYVDLEKEENKDISAEIKQAEKQLSHYLLTGKIKFDNPTIA 160 (387)
T ss_dssp EEEESTTHHHHHHHHHHHHHHTTTTEEEEEEEEECCSHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHCCCCCSCHHHH
T ss_pred EECCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 82121767776899999998740573048887752885888667764133034445678899988876387778985101
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~Y~w~qlypt~YH~Lr~Dyf~~~~~L~~Lk~yL~~n~kqM~Wd~f~~fn~~Qk~lf~~~vgf~~E~~qq~~~q~~nFiFt 240 (387)
T d2ex0a1 161 RYVWQSAFPVKYHFLSTDYFEKAEFLQPLKEYLAENYQKMDWTAYQQLTPEQQAFYLTLVGFNDEVKQSLEVQQAKFIFT 240 (387)
T ss_dssp TTCGGGTSCEEEEESCHHHHHHCGGGHHHHHHHGGGEEECCSCHHHHSCHHHHHHHHHHHTCCHHHHHHTCCSSEEEEEE
T ss_pred EEEHHHCCCCHHHHEEHHHHHCCCCCHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEE
T ss_conf 33044406743431105565057452479999840333467523200698888899987179899999997267875997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 GTts~~~~~e~~eyyaqqQInvin~a~ne~s~~~~g~~ydLfFKGHP~~~~~N~~I~~~~~~mi~IpakIpFEvLmMTg~ 320 (387)
T d2ex0a1 241 GTTTWEGNTDVREYYAQQQLNLLNHFTQAEGDLFIGDHYKIYFKGHPRGGEINDYILNNAKNITNIPANISFEVLMMTGL 320 (387)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHHHHSTTSTTCCCTTEEEEEECCTTCTHHHHHHHHHSSSCEECCTTSCHHHHHHTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEECCCCCEEEECCCCCCCHHHHHHHHCCHHHHCCCCCCCHHHHHHCCC
T ss_conf 13455676306778899989998732388996530675115772699865056899743355522644586299987278
Q ss_pred ------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------9
Q 000711 482 ------------------------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------------------------s 482 (1338)
-
T Consensus 321 LPd~VGG~aSSlyFsiP~e~in~ivFtss~~~~s~~d~~~~~lvqVM~~L~iv~~~~V~fw~~~k~~ 387 (387)
T d2ex0a1 321 LPDKVGGVASSLYFSLPKEKISHIIFTSNKQVKSKEDALNNPYVKVMRRLGIIDESQVIFWDSLKQL 387 (387)
T ss_dssp CCSEEEEECCGGGGGSCGGGEEEEEECCCSSCSSHHHHHTSHHHHHHHHTTSCCGGGEEEGGGSCCC
T ss_pred CCHHHCCCCCEEEEECCCCCEEEEEEECCCCCCCHHHHHHCCHHHHHHHHCCCCHHHEEEHHHHHCC
T ss_conf 8054336000258975533124899933764256565653839999999777766763676753039
|
| >d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tryptophanyl-tRNA synthetase (TrpRS) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=29091.23 Aligned_cols=1 Identities=0% Similarity=0.105 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~pw~v~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~~rRg~~f~hrd~~~il~~~~~gkp~~vytG 80 (386)
T d1r6ta2 1 EDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTG 80 (386)
T ss_dssp CCEESSSCEECSCTTCCCHHHHHHHHTCEECCHHHHHHHHHHHCSCCCHHHHTTSEEEEESHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHCCEEEECCCHHHHHHHHHCCCCEEEEEC
T ss_conf 98438660668876666699999984888688899999997536886154533604422679999999974998589945
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~PSg~~lHlGh~v~~~~~~~~q~~~~~~v~i~iaD~~a~~~~~~~~~e~~~~~~e~~~~~lA~GlDp~kt~i~~~s~~~ 160 (386)
T d1r6ta2 81 RGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYM 160 (386)
T ss_dssp ECCCTTCCBGGGHHHHHHHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEEHHHHG
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHH
T ss_conf 17998402899999999999999721324489932517640456999999999999999999817895002899684799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~l~~~~~~~~~l~r~~t~~~~k~~~~~~~~~~~g~~~YP~lQaaDil~~~~d~~~~~~~~~~~lvpvG~DQ~~h~~ltR 240 (386)
T d1r6ta2 161 GMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTR 240 (386)
T ss_dssp GGCTTHHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 98899999999998756514888864335677676531279889999983470542255665420110262899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 Dia~r~~~~~p~~l~~~~lpgL~G~~~KMSsS~~~s~I~l~D~~~~i~~KI~~~~~~~~~~~~~e~~~~~g~~~~~v~~~ 320 (386)
T d1r6ta2 241 DVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFM 320 (386)
T ss_dssp HHGGGGTCCCCEEEEECCCEETTEEEEECCTTSTTCCCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHH
T ss_pred HHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 99998278886221144556778743445567777434635988899997661143168765446000389841317999
Q ss_pred -----------------------------------------------------------------C
Q ss_conf -----------------------------------------------------------------9
Q 000711 482 -----------------------------------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------------------------------s 482 (1338)
|
T Consensus 321 ~l~~f~~d~~~~eel~~~y~~G~l~~gd~K~~lae~l~~~l~~~rekr~~~~~~~v~~~l~~~kl~ 386 (386)
T d1r6ta2 321 YLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLA 386 (386)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTSCCCCC
T ss_pred HHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 999986987589999999976999989999999999999978999999998888999985546799
|
| >d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Tryptophan synthase, beta-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=0 Score=29089.24 Aligned_cols=1 Identities=0% Similarity=-1.025 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~~~pe~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~rpTPLi~~~~Ls~~lgg~~Iy~K~E~lnptGS 80 (386)
T d1v8za1 1 MWFGEFGGQYVPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGA 80 (386)
T ss_dssp CEETTEECCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCSCCEEECHHHHHHHTSSEEEEEEGGGSTTSB
T ss_pred CCCCCCCCEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 97678098848788899999999999999639899999999987338999855173766876289739999666877877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~KdR~a~~~i~~a~~~G~~~~v~~~s~Gn~g~a~A~aaa~~G~~~~i~mp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~ 160 (386)
T d1v8za1 81 HKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRT 160 (386)
T ss_dssp THHHHHHHHHHHHHHTTCCEEEEEESSSHHHHHHHHHHHHTTCEEEEEEEHHHHTTCHHHHHHHHHTTCEEEEECSTTSS
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCH
T ss_conf 64168999999876528831675225226999999999976986430344115544179999998649827994687430
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~q~~~~~g~~pd~vv~~vGgG~~~~g~~~~~~ 240 (386)
T d1v8za1 161 LKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFV 240 (386)
T ss_dssp HHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf 88889989999986056654214544574336133310013544537888998628989889977887178899998764
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~v~iigvep~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v 320 (386)
T d1v8za1 241 NDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYV 320 (386)
T ss_dssp TCTTSEEEEEEEEETBGGGTBSCCHHHHCEEEEETTEEEEECBCTTSCBCCCCCSSTTSCCSBCCHHHHHHHHTTSEEEE
T ss_pred HCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEE
T ss_conf 23670599970576643355532000357655551021001068777603443222221245530577888754854999
Q ss_pred -----------------------------------------------------------------C
Q ss_conf -----------------------------------------------------------------9
Q 000711 482 -----------------------------------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~VtD~E~~~a~~~La~~EGI~~~~~sa~alA~a~kla~~~~~~~~VV~iltG~G~kD~~~~~~~~g 386 (386)
T d1v8za1 321 TVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMSRDEIIIVNLSGRGDKDLDIVLKVSG 386 (386)
T ss_dssp EEEHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHTSCTTCEEEEEECBBSGGGHHHHHHHHC
T ss_pred EECHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHCC
T ss_conf 989999999999999965993566799999999998787199897999968885212999998539
|
| >d1muwa_ c.1.15.3 (A:) D-xylose isomerase {Streptomyces olivochromogenes [TaxId: 1963]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: Xylose isomerase domain: D-xylose isomerase species: Streptomyces olivochromogenes [TaxId: 1963]
Probab=100.00 E-value=0 Score=29087.66 Aligned_cols=1 Identities=0% Similarity=0.072 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~p~~~~rF~~~~Wt~~~~g~dpFG~~tr~~~~~~d~~~~~~~lG~~~~~fHd~D~~P~~~~~~e~~~~~~~i~~~l~~ 80 (386)
T d1muwa_ 1 SYQPTPEDRFTFGLWTVGWQGRDPFGDATRPALDPVETVQRLAELGAHGVTFHDDDLIPFGSSDTERESHIKRFRQALDA 80 (386)
T ss_dssp CCCCCGGGCEEEEHHHHTCCCCBTTBCCSSCCCCHHHHHHHHHHHTCCEEEEEHHHHSCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99898445335886205765879999888999898999999998599879747775688899867889999999999985
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~Gl~~~~~t~nlf~~p~~~~Ga~tspD~~vR~~Ai~~~k~aiDia~~LGa~~vv~W~G~~G~~~~~~~d~~~~~~~l~e~ 160 (386)
T d1muwa_ 81 TGMTVPMATTNLFTHPVFKDGGFTANDRDVRRYALRKTIRNIDLAVELGAKTYVAWGGREGAESGAAKDVRVALDRMKEA 160 (386)
T ss_dssp HTCBCCEEECCCSSSGGGTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCSEEEECCTTCEESSTTSCCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCEECCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 29701134156410200113787792999999999999999999998399848984787755677667999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 l~~v~dya~~~g~~v~~~IEpkP~EP~~~~~~~t~~~al~~l~~~g~~~~~glnlD~gHa~~ag~~~~~~ia~a~~~grL 240 (386)
T d1muwa_ 161 FDLLGEYVTSQGYDIRFAIEPKPNEPRGDILLPTVGHALAFIERLERPELYGVNPEVGHEQMAGLNFPHGIAQALWAGKL 240 (386)
T ss_dssp HHHHHHHHHHHTCCCEEEECCCSSSSSSEESSCSHHHHHHHHTTSSSGGGEEECCBHHHHHTTTCCHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCEECCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCE
T ss_conf 99999999972999369982057887553310769999999997299531346644465330477715899999873867
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~vhlNd~~~~~~D~DL~fG~~~~~~~~~~~~~L~~~Gy~G~~~FD~k~~R~~~~~~~~~~~~~~m~~~a~~~~~a~~~~ 320 (386)
T d1muwa_ 241 FHIDLNGQSGIKYDQDLRFGAGDLRAAFWLVDLLESAGYEGPRHFDFKPPRTEDIDGVWASAAGCMRNYLILKERAAAFR 320 (386)
T ss_dssp CCCEECBCCSSSSCCCBCTTSSSHHHHHHHHHHHHHHTCCSCEEECCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 34211533477743456676401789999999999559988330540367788766799999999999999999999865
Q ss_pred -----------------------------------------------------------------C
Q ss_conf -----------------------------------------------------------------9
Q 000711 482 -----------------------------------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~d~~~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~e~Le~l~~~~l~g~r 386 (386)
T d1muwa_ 321 ADPEVQEALRASRLDELAQPTAADGVQELLADRTAFEDFDVDAAAARGMAFERLDQLAMDHLLGAR 386 (386)
T ss_dssp HCHHHHHHHHHTTHHHHTSCSCTTCHHHHHHCGGGTTTCCHHHHHHSCCCHHHHHHHHHHHHHTCC
T ss_pred HCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf 499999999986554113544445256677776520013813343255029999999999971379
|
| >d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Arginase/deacetylase superfamily: Arginase/deacetylase family: Histone deacetylase, HDAC domain: Histone deacetylase 7, HDAC7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=29087.06 Aligned_cols=1 Identities=0% Similarity=-0.427 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~Tg~vyd~~~l~H~~~~g~~~~HPE~p~Rl~~i~~~L~~~gl~~~~~~~~p~~a~~~~L~~vH~~~YI~~l~~~~~ 80 (386)
T d3c10a1 1 TLPFTTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPL 80 (386)
T ss_dssp CCTTCEEEECCGGGGGCCCTTCCGGGCSSCTHHHHHHHHHHHHTTCGGGSEEECCCCCCHHHHTTTSCHHHHHHHHCCTT
T ss_pred CCCCCEEEEECHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHCCHHHHHHHHHCHH
T ss_conf 99887799977788557899999899897989999999999966996578376789899999988299999999862605
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~dt~~~~~~s~~Aa~~aaG~~~~a~~~v~~~~~~~afa~~rppGHHA~~~ 160 (386)
T d3c10a1 81 SRLKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHS 160 (386)
T ss_dssp CSCCCCHHHHHHHHHC---CBCTTSCEESSSSCEECTTTHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCSSCCTTCBTT
T ss_pred HHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 43112233321034555420367777666888645761089999998457888776542376544441244323545655
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~GFC~fNdvAiaa~~l~~~~~~~rV~iiD~DvHhGnGTq~if~~~~~V~~~SiH~~~~~~~~p~tG~~~e~G~g~g~g 240 (386)
T d3c10a1 161 TAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGAGSGEG 240 (386)
T ss_dssp BCBTTBSSCHHHHHHHHHHHHSTTCCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECTTTTSTTCCCCTTCCCCGGGTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC
T ss_conf 66873433288999999986214677437742467887604676425543354333566545678889887638877766
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~n~pl~~~l~~~~~d~~yl~~~~~~l~~~~~~f~PdlIvvsaG~D~~~~D~~pLg~l~lt~~~~~~~~~~l~~~~~~~ 320 (386)
T d3c10a1 241 FNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNLAGGA 320 (386)
T ss_dssp CEEEEEECSCSSSCCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCCGGGCCCBBCHHHHHHHHHHHTTSGGGC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 64456410136799983999999999999999866998899968825334675356367558999999999999873998
Q ss_pred -----------------------------------------------------------------C
Q ss_conf -----------------------------------------------------------------9
Q 000711 482 -----------------------------------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------------------------------s 482 (1338)
-
T Consensus 321 vv~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~ 386 (386)
T d3c10a1 321 VVLALEGGHDLTAICDASEACVAALLGNRVDPLSEEGWKQKPNLNAIRSLEAVIRVHSKYWGCMQR 386 (386)
T ss_dssp EEEEECSCCCHHHHHHHHHHHHHHHHTCCCCGGGCSGGGSCCCHHHHHHHHHHHHHHTTTCGGGCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 799968888865899999999999838999987841013588888999999999999886076329
|
| >d1v5da_ a.102.1.2 (A:) Chitosanase {Bacillus sp., strain k17 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Cellulases catalytic domain domain: Chitosanase species: Bacillus sp., strain k17 [TaxId: 1409]
Probab=100.00 E-value=0 Score=29085.70 Aligned_cols=1 Identities=0% Similarity=0.305 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~pfp~~~~y~~~~~~~~~~q~~~~~~~~~~y~~wk~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~t~SEGqgYGM 80 (386)
T d1v5da_ 1 AKEMKPFPQQVNYAGVIKPNHVTQESLNASVRSYYDNWKKKYLKNDLSSLPGGYYVKGEITGDADGFKPLGTSEGQGYGM 80 (386)
T ss_dssp CCCSSCSCCCCCCTTCCCCCSSCHHHHHHHHHHHHHHHHHHHEECCCTTSTTCCEECCCCCCCBTTBCCCEEHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHH
T ss_conf 98788898753536774888667899999999999999999853367777764001465556788898753005888999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 l~Av~~~~~~~nd~~~Fd~lw~wt~~~l~~~~~~L~aW~~~~~~~~v~d~nsAtDgDl~iA~ALl~A~~~Wg~~~~~~Y~ 160 (386)
T d1v5da_ 81 IITVLMAGYDSNAQKIYDGLFKTARTFKSSQNPNLMGWVVADSKKAQGHFDSATDGDLDIAYSLLLAHKQWGSNGTVNYL 160 (386)
T ss_dssp HHHHHTBTTBTTHHHHHHHHHHHHHHTBCSSCTTSBCSEECSSGGGTTTSCCCHHHHHHHHHHHHHHHHHHCSSSSSCHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99998476775619999999999999860679998668857999877799988768999999999999774885178999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~A~~ii~~i~~~~~~~~~~~l~~g~~~~~~~~~~npSY~~p~~~~~fa~~~~d~~W~~v~~~~~~ll~~~~~~~~~~tG 240 (386)
T d1v5da_ 161 KEAQDMITKGIKASNVTNNNQLNLGDWDSKSSLDTRPSDWMMSHLRAFYEFTGDKTWLTVINNLYDVYTQFSNKYSPNTG 240 (386)
T ss_dssp HHHHHHHHHTHHHHHBCTTSSBCSSTTSCTTCCCBCGGGCCHHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHCTTTC
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999998750578887426888788898755831054999999997458972999999999999998763188768
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 L~PDw~~~~~~~~~~~~~~~~~~~~~~~~ydA~Rvpl~la~d~~w~g~~~a~~~~~~~~~f~~~~~~~~~~~i~~~y~l~ 320 (386)
T d1v5da_ 241 LISDFVVKNPPQPAPKDFLDESEYTNAYYYNASRVPLRIVMDYAMYGEKRSKVISDKVSSWIQNKTNGNPSKIVDGYQLN 320 (386)
T ss_dssp CCCSSEETTTTEECCTTGGGSCTTTTSBCTTGGGHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHTTCGGGCCSCBCTT
T ss_pred CCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 99631212786767765677777888724119999999998886427804789999999999986147976556632147
Q ss_pred -----------------------------------------------------------------C
Q ss_conf -----------------------------------------------------------------9
Q 000711 482 -----------------------------------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------------------------------s 482 (1338)
-
T Consensus 321 G~~~~~~~~~~~~a~~~~aa~~~~~~~~~~~~~~~~~~~~~~~YY~~~L~Ll~ll~lsGn~~~p~p 386 (386)
T d1v5da_ 321 GSNIGSYPTAVFVSPFIAASITSSNNQKWVNSGWDWMKNKRERYFSDSYNLLTMLFITGNWWKPVP 386 (386)
T ss_dssp SCBCCCSCCHHHHHHHHHTTTTCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCSCCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 742688875899999999862873169999998733357778857999999999997388888998
|
| >d1xmxa_ c.52.1.26 (A:) Hypothetical protein VC1899 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Restriction endonuclease-like superfamily: Restriction endonuclease-like family: Hypothetical protein VC1899 domain: Hypothetical protein VC1899 species: Vibrio cholerae [TaxId: 666]
Probab=100.00 E-value=0 Score=29016.48 Aligned_cols=1 Identities=0% Similarity=0.437 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
.
T Consensus 1 ~~m~~hv~~i~~~~~~n~~p~l~~~~~p~~~v~i~t~~~~~~~e~L~~~lk~~~i~~e~~~i~~~~d~~~I~~~l~~~~~ 80 (385)
T d1xmxa_ 1 NAMAIHVGIIDQDPVRLVTPLLDHRTVSRHIIFIGDHTQTVIYQRLSDVLNKRNISTDFFEIPAGSNTSAIKSAIRELAE 80 (385)
T ss_dssp CTTEEEEEECCSSCHHHHHHHHSTTCCCCEEEEEECGGGHHHHHHHHHHHHHTTCEEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred CCEEEEEEEECCCCHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 96289999963772435568654788886699996743699999999999846986168745875576999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~v~lN~TGGTK~Msl~ay~~~r~~~~~~~Y~d~~~~rl~~l~~~~~~~~~~~~~i~i~d~l~~~~~~~~~~~~ 160 (385)
T d1xmxa_ 81 TLKARGEEVKFNASCGLRHRLLSAYEVFRSYHWPIFVVEPNSDCLCWLYPEGNNDTQVQDRITIADYLTIFGARGEFNEH 160 (385)
T ss_dssp HHHHHTCEEEEECSSSCHHHHHHHHHHHHHTTCCEEEECTTTCEEEEEESTTSCCEECCCCCCHHHHHHHTTCEEECC--
T ss_pred HHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCHHCCCC
T ss_conf 62203873999916766888999999998559846999769966999667767675577878899999984033000566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~el~~~l~~ln~~~~~~~~~~~~~~~~s~~~~~~~~~~~ll~~l~~~~~~~~~~~~l~F 240 (385)
T d1xmxa_ 161 QLSPQLDQQLYQLGERWASNALELGPGLATLNYLATTCRKEQKLDVELSDKQQGYRELNLLLSDLVEAKIASYENGILTF 240 (385)
T ss_dssp --CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCSEEECCHHHHTCHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCEEEE
T ss_conf 68866789999999998634776767999999986512212010244462244536788999988753432214863231
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~a~~Fl~G~WLE~yv~~~l~~~~~~~~~~~d~~~~v~i~~~~~~~~~~nElDv~~~~~~~l~~IECKt~~~~~~~~~ 320 (385)
T d1xmxa_ 241 INEEARRFANGEWLETLVHSTVKQIQDDMPTIQDRSLNVQVYRQLGEREVRNELDVATVVNNKLHIIECKTKGMRDDGDD 320 (385)
T ss_dssp SSHHHHHHHHTTHHHHHHHHHHHHHHTTCTTEEEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEEEESSCCCC-CCC
T ss_pred CHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEECCCCCCCCHHH
T ss_conf 41778743588089999999999877540445026767798326888765532689999799999999568887754578
Q ss_pred ----------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------9
Q 000711 482 ----------------------------------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------------------------------s 482 (1338)
+
T Consensus 321 ~l~kl~~l~~~lgG~~~r~~LVs~~~~~~~~~~ra~~~~i~vI~~~~l~~l~~~L~~w~~~~~~~ 385 (385)
T d1xmxa_ 321 TLYKLESLRDLLGGLQARAMLVSFRPLRHNDITRAEDLGLALIGPDELKDLKTHLTQWFKAAGGN 385 (385)
T ss_dssp HHHHHHHHHHHHHGGGCEEEEEESSCCCHHHHHHHHHHTCEEECGGGGGGHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHCCC
T ss_conf 89999999998289532499999058847799999866949983888899999999999973799
|
| >d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Lactaldehyde reductase FucO species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29016.43 Aligned_cols=1 Identities=0% Similarity=-1.025 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 m~~~~~~~~~~~fG~g~l~~l~~~l~~~G~k~~Livt~~~~~~~g~~~~v~~~L~~~gi~~~vf~~v~~~p~~~~v~~~~ 80 (385)
T d1rrma_ 1 MANRMILNETAWFGRGAVGALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGL 80 (385)
T ss_dssp CCEEEECCSEEEESTTGGGGHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHH
T ss_pred CCCEEECCCCCEECCCHHHHHHHHHHHCCCCEEEEEECCCHHHCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHH
T ss_conf 99526669972798689999999999769997999989655658089999999987598599986826997989999886
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~D~IiaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~lP~i~IPTtagTgse~t~~avi~~~~~~~ 160 (385)
T d1rrma_ 81 GVFQNSGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPTTAGTAAEVTINYVITDEEKRR 160 (385)
T ss_dssp HHHHHHTCSEEEEEESHHHHHHHHHHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEECSSSCCTTTCSEEEEEETTTTE
T ss_pred HHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 54303588889866988422699999999638753026665043222478774674366544643234442224444331
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 K~~~~~~~~~P~~~i~Dp~l~~~~P~~~~a~~g~Dal~h~~E~~~s~~~~p~~~~~a~~a~~~~~~~l~~~~~~~~~~~~ 240 (385)
T d1rrma_ 161 KFVCVDPHDIPQVAFIDADMMDGMPPALKAATGVDALTHAIEGYITRGAWALTDALHIKAIEIIAGALRGSVAGDKDAGE 240 (385)
T ss_dssp EEEEECGGGCCSEEEECGGGTTTSCHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred EEEEEEEECCCCCCCCHHHHHCCCCHHEEEECHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 01355420135322006777327980126400364664112111113320001277899999999752432000056899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~a~~~ag~~~~~~~~g~~hai~~~l~~~~~i~HG~a~ai~lp~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 320 (385)
T d1rrma_ 241 EMALGQYVAGMGFSNVGLGLVHGMAHPLGAFYNTPHGVANAILLPHVMRYNADFTGEKYRDIARVMGVKVEGMSLEEARN 320 (385)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHTTCCCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 99999999976651676400053203200233457510001436889987335269999999998388656999899999
Q ss_pred ----------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------9
Q 000711 482 ----------------------------------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~i~~i~~~~~~lglP~~L~d~Gv~~~~l~~ia~~a~~~~~~~~nP~~~t~~di~~il~~a~~g~ 385 (385)
T d1rrma_ 321 AAVEAVFALNRDVGIPPHLRDVGVRKEDIPALAQAALDDVCTGGNPREATLEDIVELYHTAWEGG 385 (385)
T ss_dssp HHHHHHHHHHHHTTCCSSGGGGTCCGGGHHHHHHHHHTCGGGGGCSSCCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 99999999999859999988829899999999999985720059994389999999999997489
|
| >d1ir6a_ c.107.1.2 (A:) Exonuclease RecJ {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHH phosphoesterases superfamily: DHH phosphoesterases family: Exonuclease RecJ domain: Exonuclease RecJ species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=29014.05 Aligned_cols=1 Identities=0% Similarity=-1.224 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~l~~m~~A~~~i~~ai~~~e~I~I~gDyD~DGitS~aIl~~~L~~~g~~~~~~Ip~R~~eGyGl~~~~i~~~~~~ 80 (385)
T d1ir6a_ 1 PLALLPLKGLREAAALLEEALRQGKRIRVHGDYDADGLTGTAILVRGLAALGADVHPFIPHRLEEGYGVLMERVPEHLEA 80 (385)
T ss_dssp CCCCCCCTTHHHHHHHHHHHHHTTCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEECCCTTTSCSSCCGGGHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHC
T ss_conf 97676735899999999999977997999927786067999999999998899759987786656998689999998533
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~LiItvD~G~~~~e~i~~~~~~gi~vIv~DHH~~~~~~~~~~iv~~~~~~~~~~~~~gaGva~~l~~~l~~~~~~~~~~ 160 (385)
T d1ir6a_ 81 SDLFLTVDCGITNHAELRELLENGVEVIVTDHHTPGKTPPPGLVVHPALTPDLKEKPTGAGVAFLLLWALHERLGLPPPL 160 (385)
T ss_dssp CSEEEESSCCTTCGGGHHHHTTSCCEEEEECCSCCCSSCCSSEEECGGGSTTCCCCCCHHHHHHHHHHHHHHTTTCCCCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHCHH
T ss_conf 77699823652203667667632872321465465657401212157678850101302578999999886432442202
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~l~L~aiGtiaD~~pL~~eNR~lv~~gl~~~~~~~~~g~~~L~~~~~~~~~~~di~f~i~P~iNA~GRl~~a~~a~~lL 240 (385)
T d1ir6a_ 161 EYADLAAVGTIADVAPLWGWNRALVKEGLARIPASSWVGLRLLAEAVGYTGKAVEVAFRIAPRINAASRLGEAEKALRLL 240 (385)
T ss_dssp GGHHHHHHHHHHTTCCCSSHHHHHHHHHHHHCTTCSCHHHHHHHHHTTCCSCSHHHHHTHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 44455456455455401367889987777785114558899997542213201221111131113334444310212444
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~a~~~a~~l~~~N~~Rk~~~~~i~~~a~~~~~~~~~~i~~~~~~~~~GviGivAsrl~~~~~kP~iv~~~~kGS 320 (385)
T d1ir6a_ 241 LTDDAAEAQALVGELHRLNARRQTLEEAMLRKLLPQADPEAKAIVLLDPEGHPGVMGIVASRILEATLRPVFLVAQGKGT 320 (385)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCTTSSSEEEECTTCCHHHHHHHHHHHHHHHCSCEEEEETTEEE
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCEEE
T ss_conf 41236789999999887777899999999999875430335159995377662022045899999729978999667387
Q ss_pred ----------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------9
Q 000711 482 ----------------------------------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~Rs~~g~~l~~~l~~~~~~l~~~GGH~~AaG~~i~~~~~~~F~~~l~~~~~~~~~~~~~~~~~d~ 385 (385)
T d1ir6a_ 321 VRSLAPISAVEALRSAEDLLLRYGGHKEAAGFAMDEALFPAFKARVEAYAARFPDPVREVALLDL 385 (385)
T ss_dssp EECCSSCCHHHHHHTTGGGCSEEEECSSEEEEECCGGGHHHHHHHHHHHHHSSCCTTTTCCSTTC
T ss_pred EECCCCCCHHHHHHHHHCHHHCCCCHHHCCEEEECHHHHHHHHHHHHHHHHHCCCCCCHHHHCCC
T ss_conf 76899978999999874530137991670467974989999999999999856353220442479
|
| >d1uhga_ e.1.1.1 (A:) Ovalbumin {Hen (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Serpins superfamily: Serpins family: Serpins domain: Ovalbumin species: Hen (Gallus gallus) [TaxId: 9031]
Probab=100.00 E-value=0 Score=29013.48 Aligned_cols=1 Identities=100% Similarity=2.331 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
|
T Consensus 1 ~~l~~~~~~Fa~~l~~~l~~~~~~~N~v~SP~si~~~Laml~~GA~g~T~~el~~~L~~~~~~~~~~~~~~~~~~~~~~~ 80 (385)
T d1uhga_ 1 GSIGAASMEFCFDVFKELKVHHANENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFGDSIEAQCGTSVNVH 80 (385)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCTTSCEEECHHHHHHHHHHHHTTCCHHHHHHHHHHHTCTTCTTCSHHHHTTTTSCTTTT
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHH
T ss_conf 96789999999999999861396986998889999999999986775899999997388877664301444203388999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~l~v~~~~~~~~~f~~~~~~~y~~~~~~~df~~~~~~a~~~IN~wv~~~T~g~i~~~ 160 (385)
T d1uhga_ 81 SSLRDILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQARELINSWVESQTNGIIRNV 160 (385)
T ss_dssp HHHHHHHHHHTSCCSSEEEEEEEEEEEETTSCBCHHHHHHHHHHCSSCEEEECCTTTHHHHHHHHHHHHHHHTTTCSCCC
T ss_pred HHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999999963899873699998888866765448899999987097334564311799999999999998706886566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 v~~~~l~~~t~l~lina~~f~~~W~~~F~~~~t~~~~F~~~~~~~~~v~~m~~~~~~~~~~~~~~~~~~v~Lpy~~~~~s 240 (385)
T d1uhga_ 161 LQPSSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPFRVTEQESKPVQMMYQIGLFRVASMASEKMKILELPFASGTMS 240 (385)
T ss_dssp SCTTSSCTTCCEEEEEEEEEEECEEECCCGGGCEEEEECCCC--CEEEEEEEEEEEEEEEEEGGGTEEEEEEEBTTSSEE
T ss_pred CCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEHHHEECCCCCCCCCCCCCCEEEECCCCCCCEE
T ss_conf 78667896544114542799542046664555540664258994353002001021234545566817887132489758
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 m~iilP~~~~~l~~~~~~l~~~~l~~~~~~~~~~~~~v~l~lPkF~i~~~~dl~~~L~~lGl~~~F~~~adfs~is~~~~ 320 (385)
T d1uhga_ 241 MLVLLPDEVSGLEQLESIINFEKLTEWTSSNVMEERKIKVYLPRMKMEEKYNLTSVLMAMGITDVFSSSANLSGISSAES 320 (385)
T ss_dssp EEEEEESSTTCHHHHHHHCCHHHHHHHTSTTTCEEEEEEEEEECEEEEEEEEHHHHHHHHTCCGGGSTTCCCTTTBCSTT
T ss_pred EEEEECCCCCCHHHHHHHCCHHHHHHHHHHHCCCCEEEEEEEEEEEEECCEEHHHHHHHCCCCHHHCCCCCCCCCCCCCC
T ss_conf 99997776676155554213556999763430424599997104876311007998875598111068787656779998
Q ss_pred ----------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------9
Q 000711 482 ----------------------------------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------------------------------s 482 (1338)
=
T Consensus 321 l~vs~i~q~~~i~v~E~Gt~a~a~t~~~~~~~~~~~~f~~drPF~f~I~~~~t~~~lf~G~v~~P 385 (385)
T d1uhga_ 321 LKISQAVHAAHAEINEAGREVVGSAEAGVDAASVSEEFRADHPFLFCIKHIATNAVLFFGRCVSP 385 (385)
T ss_dssp CCEEEEEEEEEEEECSCEEECCCHHHHHHHHTTCCCEEECCSCEEEEEEETTTCCEEEEEEESCC
T ss_pred CEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEECCCCCEEEEEEECCC
T ss_conf 06552788999998998713010120001367899779913999999998999968999994398
|
| >d1ejxc2 c.1.9.2 (C:1130-1422,C:1476-1567) alpha-subunit of urease, catalytic domain {Klebsiella aerogenes [TaxId: 28451]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Klebsiella aerogenes [TaxId: 28451]
Probab=100.00 E-value=0 Score=29022.95 Aligned_cols=1 Identities=100% Similarity=1.268 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
|
T Consensus 1 GiDtHvHfi~Pqq~~~al~sGiTT~iGgGtGPa~Gt~att~tpg~~~~~~ml~a~d~~P~N~g~~gkGn~s~~~~l~eqi 80 (385)
T d1ejxc2 1 GIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRMLQAADSLPVNIGLLGKGNVSQPDALREQV 80 (385)
T ss_dssp EEEEEEECSCTTHHHHHHHTTEEEEEEECCSSSHHHHHSSCCCHHHHHHHHHHHHTTSSSEEEEEEECCCSSHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 95545334488789999866973663686688877777573888899999998655078331052116669868999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~AGa~GlKiHEDwGatpa~id~~L~vad~~dvqv~iHtDtlNE~gfvedT~~a~~gRtiH~~H~EGaGGGHAPDii~~~~ 160 (385)
T d1ejxc2 81 AAGVIGLKIHEDWGATPAAIDCALTVADEMDIQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACA 160 (385)
T ss_dssp HHTCSEEEEEGGGCCCHHHHHHHHHHHHHHTCEEEEECCTTCSSCCHHHHHHHHTTCCEEESSTTSTTSSSTTTGGGGGG
T ss_pred HHHHCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHC
T ss_conf 71132144775235675899999876754183589760535400200214887579730332025677786631567624
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~nvlpsSTnPT~P~t~nt~~EhldMlmvcHhL~~~ipeDvafAesRiR~eTiaAEdvLhD~GaiSi~sSDsQaMGRvGE 240 (385)
T d1ejxc2 161 HPNILPSSTNPTLPYTLNTIDEHLDMLMVCHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTSSDSQAMGRVGE 240 (385)
T ss_dssp CTTEEEEEESTTSSCBTTHHHHHHHHHHHC----------CHHHHHHSCHHHHHHHHHHHHTTSSCEEECCTTSSSCTTC
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHCCCEEECCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCC
T ss_conf 68535789998878866736764772332046898875677664233530123267776345743442153332576774
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 vi~RtwqtA~kmk~~rG~l~~d~~~~DN~RvkRYIAKYTINPAIahGIsh~VGMFGA~G~A~~~tSvtFVSqaAid~gi~ 320 (385)
T d1ejxc2 241 VILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAHEVGMFGALGSARHHCRLTFLSQAAAANGVA 320 (385)
T ss_dssp HHHHHHHHHHHHHHHHCSCTTCCSSSCHHHHHHHHHHHTHHHHHHTTCTTTSSCGGGSHHHHHHHCEEEECHHHHHTTHH
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHCCCCCEECCCCCCCCCCCCCCEEEECHHHHHCCCH
T ss_conf 11020787999987603687777777624777666662368188768455135323456555457138856888867684
Q ss_pred ----------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------9
Q 000711 482 ----------------------------------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------------------------------s 482 (1338)
=
T Consensus 321 ~~LgL~K~lvpVkn~R~ItK~DM~~Nda~P~IeVDPeTYeV~aDGelltcePA~~LPLAQRYFLF 385 (385)
T d1ejxc2 321 ERLNLRSAIAVVKGCRTVQKADMVHNSLQPNITVDAQTYEVRVDGELITSEPADVLPMAQRYFLF 385 (385)
T ss_dssp HHTTCCSEEEECCCTTTCCGGGSTTCCCCCCEEECTTTCCEEETTEECCCCCBSSCSSSTTTCCC
T ss_pred HHHCCCCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCEEEEECCEECCCCCCCCCCCHHCCCCC
T ss_conf 77388760686148887787786015789982789997689989999046765667631110176
|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Aspergillus niger [TaxId: 5061]
Probab=100.00 E-value=0 Score=29010.55 Aligned_cols=1 Identities=100% Similarity=2.264 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
|
T Consensus 1 ~~~~~~~~~p~~~~~~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~~~~~~~~~~~~~~~~~~~~~~~dw~~~t 80 (385)
T d1cf3a1 1 GIEASLLTDPKDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYET 80 (385)
T ss_dssp CHHHHSBCCGGGTTTCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCCCTTSCHHHHBGGGTTTTTTSTTBCCEEC
T ss_pred CCCHHHHCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf 96605218912126996889998968899999999987879829998889998787832048767755218978768605
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~r~~~~~~G~~lGGsS~in~~~~~R~~~~d~d~w~~~~~~~gw~~~~l~Pyf~k~E~~~~~~~~~~~~~~~~~~ 160 (385)
T d1cf3a1 81 VELATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNA 160 (385)
T ss_dssp CCCTTTSCCCEECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEECCCCHHHHHHTCCCCG
T ss_pred CCCCCCCCEEEECCCCCCCCCCEEEEEEEECCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 57677894365221002466512331353215866611210036878676336688999887610787311221122355
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~g~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~G~~~~~d~n~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~nl 240 (385)
T d1cf3a1 161 SCHGVNGTVHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNL 240 (385)
T ss_dssp GGSCSSSSEEEBCCCCSSCBCTHHHHHHHHHHTTTCCBCCCTTSSCCCEEECCCBSBCTTCBBCCHHHHHTGGGTTCTTE
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHCCCCC
T ss_conf 55677543334565545556878999999999769997677555665533223332322333223556533732107743
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~i~t~~~V~rI~~~~~~~~~ra~GV~~~~~~g~~~~v~A~keVILsAGAi~SP~LLl~SGIGp~~~L~~~gI~~~~dlP~ 320 (385)
T d1cf3a1 241 QVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLPV 320 (385)
T ss_dssp EEEESCEEEEEEEECSSSSCEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTBSCHHHHGGGTCCCSBCCCT
T ss_pred CCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCEEEEEECCEEEECCCHHHCHHHHHHCCCCCHHHHHHCCCCEEEECCC
T ss_conf 33377368888871899654799999986899789999688899868535499999865998378998779986998974
Q ss_pred ----------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------9
Q 000711 482 ----------------------------------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------------------------------s 482 (1338)
-
T Consensus 321 g~~~~~~~~~~~vv~~~~~v~g~~~lr~v~~s~~p~~~~~~~~~~~~~~a~~~~d~i~~~~~~~~ 385 (385)
T d1cf3a1 321 GLCSMMPKEMGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMALKISDAILEDYASMQ 385 (385)
T ss_dssp TCTCBSCGGGTCSBCTTSBBTTCBSEEECSTTCCSSCCSSCSHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 04206887766614665542660571742575786212675148799985366789998775449
|
| >d1n97a_ a.104.1.1 (A:) Cyp175a1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cyp175a1 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=29008.76 Aligned_cols=1 Identities=0% Similarity=-1.091 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~dp~~~~~~~~~kyg~v~~~~~~~p~v~v~dp~~v~~il~~~~~~~~~~~~~~~~~~~G~gl~ 80 (385)
T d1n97a_ 1 MKRLSLREAWPYLKDLQQDPLAVLLAWGRAHPRLFLPLPRFPLALIFDPEGVEGALLAEGTTKATFQYRALSRLTGRGLL 80 (385)
T ss_dssp CEECCHHHHHHHHHHHHHCHHHHHHHHHHHCSEEEECCTTCCEEEECSHHHHHHHHHCTTEECCSHHHHHHHHHHCSSTT
T ss_pred CCCCCCCCCCHHHHHHHHCHHHHHHHHHHHCCCEEEEECCEEEEEECCHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCEE
T ss_conf 98888553538799987799999999999789789996998799989999999997289977688607779998579500
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~g~~wk~~R~~l~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~vdl~~~l~~~~~~vi~~~~fg~~~~~~~~~~~~~~ 160 (385)
T d1n97a_ 81 TDWGESWKEARKALKDPFLPKNVRGYREAMEEEARAFFGEWRGEERDLDHEMLALSLRLLGRALFGKPLSPSLAEHALKA 160 (385)
T ss_dssp TCCHHHHHHHHHHHCGGGSHHHHHTTHHHHHHHHHHHHHTCCSCCEEHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 37979999999997234144432231025778999987650455335788888875520255553465432015666665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ei~~~~~~~l~ag~dTt~~~l~~~l~~L~~~ 240 (385)
T d1n97a_ 161 LDRIMAQTRSPLALLDLAAEARFRKDRGALYREAEALIVHPPLSHLPRERALSEAVTLLVAGHETVASALTWSFLLLSHR 240 (385)
T ss_dssp HHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHGGGTTSTTGGGSCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 56777777666665455899999986515678899887511104697889999999988765024211211025676541
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 P~v~~~l~~E~~~~~a~i~EtlRl~p~~~~~~r~~~~d~~~~g~~i~~g~~v~~~~~~~~~~~~~dp~~F~PeRf~~~~~ 320 (385)
T d1n97a_ 241 PDWQKRVAESEEAALAAFQEALRLYPPAWILTRRLERPLLLGEDRLPPGTTLVLSPYVTQRLHFPDGEAFRPERFLEERG 320 (385)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHSCSSCCEEEEESSCEEETTEEECTTCEEEECHHHHHHHSSTTTTSCCTTHHHHSCC
T ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 02333333333332101201122333332212233322233333333333333332210011478876638432376567
Q ss_pred ----------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------9
Q 000711 482 ----------------------------------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~lpFG~G~r~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~p~~~~~~r~r~ 385 (385)
T d1n97a_ 321 TPSGRYFPFGLGQRLCLGRDFALLEGPIVLRAFFRRFRLDPLPFPRVLAQVTLRPEGGLPARPRE 385 (385)
T ss_dssp CCBTTBCTTCCSTTCCTTHHHHHHHHHHHHHHHHTTCBCCCCCCCCEEESSSEEETTCCEECCBC
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCEEEEECCCEEEEEEC
T ss_conf 88887067899765690399999999999999998378896898732460578646981788609
|
| >d2c5wb1 e.3.1.1 (B:266-650) Penicillin-binding protein 1a, transpeptidase domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta-lactamase/transpeptidase-like superfamily: beta-lactamase/transpeptidase-like family: beta-Lactamase/D-ala carboxypeptidase domain: Penicillin-binding protein 1a, transpeptidase domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=100.00 E-value=0 Score=29008.32 Aligned_cols=1 Identities=0% Similarity=0.437 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~yp~~~d~~~~e~i~~~~~~~~~~~~~~G~~I~tTiD~~lQ~~~e~~~~~~~~~~~~~~~~~~a~vv~d~~TG~IlA~v 80 (385)
T d2c5wb1 1 SNYPAYMDNYLKEVINQVEEETGYNLLTTGMDVYTNVDQEAQKHLWDIYNTDEYVAYPDDELQVASTIVDVSNGKVIAQL 80 (385)
T ss_dssp CCSCGGGHHHHHHHHHHHHHHHSCCTTTSCEEEEECCCHHHHHHHHHHHHCSSSCCCSCSSCEEEEEEEETTTCBEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEEEEEE
T ss_conf 99748999999999998777644232069987994789999999999997534312678663289999988999399999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~N~a~~~~~~pGStfKp~~~yaaAle~g~~~~~~~~~~d~~~~~~~~~~~~~n~~~~~~G~itl~~al 160 (385)
T d2c5wb1 81 GARHQSSNVSFGINQAVETNRDWGSTMKPITDYAPALEYGVYESTATIVHDEPYNYPGTNTPVYNWDRGYFGNITLQYAL 160 (385)
T ss_dssp CCSSCCCCCTTCCCTTTCCCSCCGGGHHHHHTHHHHHHTTSCSBSSCEEEESSCBCTTSSCBCCCTTSCCCEEEEHHHHH
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHH
T ss_conf 55655544434543201143467740447899999986497002331123454211136866422465565136650333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~S~N~~~~~l~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~tplqla~aya~iAngG~~~~P~~i~~i 240 (385)
T d2c5wb1 161 QQSRNVPAVETLNKVGLNRAKTFLNGLGIDYPSIHYSNAISSNTTESDKKYGASSEKMAAAYAAFANGGTYYKPMYIHKV 240 (385)
T ss_dssp HTTCHHHHHHHHHHHCHHHHHHHHHTTTCBCSSCCGGGGSCCCCSSCCSSBSCCHHHHHHHHHHHHTTSEEECCBSEEEE
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCC
T ss_conf 31655300345666403368999997087545653223445441135885256899999988765147643221430122
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~d~~~~~~~~~~~~~~v~s~~~a~~~~~~m~~vv~~GT~~~a~~~~~~vaGKTGTaq~~~~~~~~~~~~~~~~~~d~WFv 320 (385)
T d2c5wb1 241 VFSDGSEKEFSNVGTRAMKETTAYMMTDMMKTVLTYGTGRNAYLAWLPQAGKTGTSNYTDEEIENHIKTSQFVAPDELFA 320 (385)
T ss_dssp EETTSCEEECCCCEEECSCHHHHHHHHHHHHHHHHHSTTGGGCCTTCCCEEEEEECCCCHHHHHHTCCCSSCEESCEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 12344422123455420477888888764110135775221356565313565565666665444435564222205999
Q ss_pred ----------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------9
Q 000711 482 ----------------------------------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------------------------------s 482 (1338)
-
T Consensus 321 G~~P~~~~~Vwvg~~~~~~~~~~~G~~~Aapi~~~im~~~~~~~~~~~f~~P~gi~~~g~~~~~~ 385 (385)
T d2c5wb1 321 GYTRKYSMAVWTGYSNRLTPLVGNGLTVAAKVYRSMMTYLSEGSNPEDWNIPEGLYRNGEFVFKN 385 (385)
T ss_dssp EECSSEEEEEEEECSSTTSCEEGGGGGHHHHHHHHHHHHHHSSSCCCCCCCCTTEEEETTEEEEC
T ss_pred ECCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCEEEECC
T ss_conf 55998899999940788887688722889999999999997269977799999867767089529
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Probab=100.00 E-value=0 Score=29008.88 Aligned_cols=1 Identities=0% Similarity=-1.558 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~ipmrDG~~L~~~v~~P~~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~ 80 (385)
T d2b9va2 1 HDPLSVQTGSDIPASVHMPTDQQRDYIKREVMVPMRDGVKLYTVIVIPKNARNAPILLTRTPYNAKGRANRVPNALTMRE 80 (385)
T ss_dssp CCTTTCCCSCSCC---------CCSEEEEEEEEECTTSCEEEEEEEEETTCCSEEEEEEEESSCHHHHTCSSTTCSSHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 99754345777786665887667797686889989999889999997189996018999816788876556775322354
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~a~~Gy~vv~~d~RG~g~S~G~~~~~~~~~~~~~~~~~~e~~D~~~~i~w~~~q~~~~~g~vg~~G~SygG~ 160 (385)
T d2b9va2 81 VLPQGDDVFVEGGYIRVFQDIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNGRVGMTGSSYEGF 160 (385)
T ss_dssp HSCGGGHHHHHTTCEEEEEECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEEEEEEEEEEEHHHH
T ss_pred CCCHHHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHH
T ss_conf 43057999996896899976774368898512045210011220155787799999999856674446410045667899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~a~~~~~~l~a~~~~~~~~d~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (385)
T d2b9va2 161 TVVMALLDPHPALKVAAPESPMVDGWMGDDWFHYGAFRQGAFDYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFAT 240 (385)
T ss_dssp HHHHHHTSCCTTEEEEEEEEECCCTTTBSSSEETTEEBTTHHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHH
T ss_pred HHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCH
T ss_conf 99999854677634999812456532101234773011210899986541014586411114678889987252445320
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~p~~~~~~~~p~~d~~w~~~s~~~~~~~~~i~vP~l~~~g~~dd~~~~g~~~~~~~l~~~~~~~~~~LiiGPw~ 320 (385)
T d2b9va2 241 QAGLDQYPFWQRMHAHPAYDAFWQGQALDKILAQRKPTVPMLWEQGLWDQEDMWGAIHAWQALKDADVKAPNTLVMGPWR 320 (385)
T ss_dssp HTTGGGCHHHHHHHHCCSSSHHHHTTCHHHHHHHHCCCSCEEEEEETTCSSCSSHHHHHHHHHHHTTCSSCEEEEEESCC
T ss_pred HCCCCHHHHHHHHCCCCCCCHHHHHCCHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 10442134566530376543122315846888633556762899841368765433789999875156888579993776
Q ss_pred ----------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------9
Q 000711 482 ----------------------------------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------------------------------s 482 (1338)
=
T Consensus 321 H~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~WFD~~LKG~~~~~~~p~v~~~~~G~~~Wr~~~~W 385 (385)
T d2b9va2 321 HSGVNYNGSTLGPLEFEGDTAHQYRRDVFRPFFDEYLKPGSASVHLPDAIIYNTGDQKWDYYRSW 385 (385)
T ss_dssp TTGGGSCCSEETTEECSSCHHHHHHHHTHHHHHHHHHSTTCCCCCCCSEEEEETTTTEEEEESSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEECCCC
T ss_conf 77866566666664567520013689999999999708999999999879998789827418979
|
| >d2ix0a4 b.40.4.16 (A:173-557) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: RNB domain-like domain: Exoribonuclease 2, RNB species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29015.11 Aligned_cols=1 Identities=0% Similarity=-0.227 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 e~~~~~~~~~~~~~~~R~Dl~~l~~~tID~~~a~d~DDAisie~~~~~~~~l~VHIADva~~v~~~s~Ld~~A~~R~~S~ 80 (385)
T d2ix0a4 1 EAPDGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTN 80 (385)
T ss_dssp SCCCCCCCCCCCCCCCCEECTTSCCBEEECSSCCCCCEEEEEEEEGGGEEEEEEEECCGGGTSCTTSHHHHHHHHHCBCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCHHHHHCCCCHHHHHHHHHCCCE
T ss_conf 99875431001467874208899989976999942665589999689919999998777887598999999999968838
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 Ylp~~~~pMLP~~ls~~~~SL~~~~~r~a~s~~~~l~~~g~i~~~~~~~~s~I~s~~~ltY~~v~~~l~~~~~~~~~~~~ 160 (385)
T d2ix0a4 81 YLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEA 160 (385)
T ss_dssp EETTEEECSSCHHHHHTTSSCCTTCEEEEEEEEEEECTTCCBCSCCEEEEEEEECCCEEEHHHHHHHHTTCSSCCCSSHH
T ss_pred ECCCCCCCCCCHHHHHHHCCCCCCCCEEEEEEEEEECCCCCEECCCEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHH
T ss_conf 89999778898166420014566532047778999856761401336876789726757499999997403334532022
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~l~~L~~~~~~lr~~R~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~lieE~MilaN~~va~~l~~~~~~~i 240 (385)
T d2ix0a4 161 IAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGI 240 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCCCCCCEEEEEECTTSCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 59999999999999999874167621343022010244455413787404088888888887766899999997348873
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~R~~~~p~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~a~ys~~~~~H~gLgl~~Y 320 (385)
T d2ix0a4 241 YNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAY 320 (385)
T ss_dssp EEEBCCSCGGGHHHHHHHHHHTTCCCCTTGGGSHHHHHHHHHHHHHSSSSHHHHHTGGGCCCCEEESSCCCBTTTTBSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC
T ss_conf 22222357477899999999710366855334625677776520355416789999998643103798877413084612
Q ss_pred ----------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------9
Q 000711 482 ----------------------------------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------------------------------s 482 (1338)
-
T Consensus 321 thfTSPIRRY~DLivhrqL~a~L~~~~~~~~~~ei~~~~~~~~~~a~~aer~~~~~~~~~~lk~~ 385 (385)
T d2ix0a4 321 ATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDK 385 (385)
T ss_dssp BCCSCTTTBHHHHHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred EEECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 01586776377899999999997699999889999999999999999999999999999985789
|
| >d3c0na2 f.8.1.1 (A:85-468) (Pro)aerolysin, pore-forming lobe {Aeromonas hydrophila [TaxId: 644]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Aerolisin/ETX pore-forming domain superfamily: Aerolisin/ETX pore-forming domain family: (Pro)aerolysin, pore-forming lobe domain: (Pro)aerolysin, pore-forming lobe species: Aeromonas hydrophila [TaxId: 644]
Probab=100.00 E-value=0 Score=28942.54 Aligned_cols=1 Identities=0% Similarity=-1.124 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ip~~~~~~~~~~d~~~~~~~~v~~~~~fi~pls~LAh~LGY~W~gg~~~q~Vged~~~~r~gd~w~~~~~n~g~c~gyrc 80 (384)
T d3c0na2 1 IPTLSALDIPDGDEVDVQWRLVHDSANFIKPTSYLAHYLGYAWVGGNHSQYVGEDMDVTRDGDGWVIRGNNDGGCDGYRC 80 (384)
T ss_dssp CCCCCCEEECSCCHHHHHHHHHTCTTTTHHHHHHHHHHHTBSCCSCTTCSSTTCSEEEEECSSSEEEEECCCSCCCSTTT
T ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCEEECCCCCCEECCCCEEEECCCEEEEECCCCCCCCCEEE
T ss_conf 98654411389987887888762870011569999865073677677874114452566438767996256899774451
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~er~ki~~~nf~~~i~~~~f~~G~~~v~~~epi~t~s~~a~N~sDt~qt~itvt~~~t~T~TWSkT~s~~~s~sV~ik~s 160 (384)
T d3c0na2 81 GDKTAIKVSNFAYNLDPDSFKHGDVTQSDRQLVKTVVGWAVNDSDTPQSGYDVTLRGDTATNWSKTNTYGLSEKVTTKNK 160 (384)
T ss_dssp TSCCEEEEEEEEEEEEEEEEEECCCSEEEEEEEEEEEEEEEECSSSCBCCEEEEEEEEEEEEEEECCSSSGGGTCBCSSC
T ss_pred CCCCEEEEEEEEEEECCCCEECCCCEEECCCEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
T ss_conf 56215898756778657644427818844542899999997389886158899999998423898654778889999888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 f~iPligeteisvs~S~n~s~s~s~t~S~T~T~t~s~~VtVPP~Skv~V~i~l~rs~idVPYt~t~~I~Ydv~~~gFLRw 240 (384)
T d3c0na2 161 FKWPLVGETELSIEIAANQSWASQNGGSTTTSLSQSVRPTVPARSKIPVKIELYKADISYPYEFKADVSYDLTLSGFLRW 240 (384)
T ss_dssp EECCCCSSSCCCCEECTTSCGGGCCEEEEEEEECCEECCCBCTTEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEBCT
T ss_pred EECCEEEEEEEEEEEEEEEEEECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEC
T ss_conf 85663514469999976788850675137899888876301898359999999866873556899999998987116741
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 gGNa~~~hp~~Rpt~~~tf~~g~~~~~~~~i~yq~d~r~ipg~~~~wdW~w~~~~~g~~~m~~~~~~~~R~~~s~isG~f 320 (384)
T d3c0na2 241 GGNAWYTHPDNRPNWNHTFVIGPYKDKASSIRYQWDKRYIPGEVKWWDWNWTIQQNGLSTMQNNLARVLRPVRAGITGDF 320 (384)
T ss_dssp TCCCBTTCCSSCCEEEEEEEESSCCCSTTCHHHHHHTTTCGGGCSSBCHHHHHHHHCHHHHHHHHHHHTCCEEEEEEEEE
T ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
T ss_conf 56213448988886426886057888743411243202357876511364155553567777777664222346434217
Q ss_pred ---------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------9
Q 000711 482 ---------------------------------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------------------------------s 482 (1338)
+
T Consensus 321 ~a~sq~~g~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 384 (384)
T d3c0na2 321 SAESQFAGNIEIGAPVPLAADSKVRRARSVDGAGQGLRLEIPLDAQELSGLGFNNVSLSVTPAA 384 (384)
T ss_dssp EEEEEEECCCEECCCEEC-----------------CCEEECCCCHHHHHHHTCEEEEEEEEECC
T ss_pred EEEECCCEEEEECCCCCCCCHHHHCCCCCCCCCCCCEEEEECCCHHHHHHCCCCCEEEEEEECC
T ss_conf 8850211015524711158068642346664467863897347977886367674389976389
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=28942.24 Aligned_cols=1 Identities=0% Similarity=-0.193 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~k~~T~~vh~G~~~~~~~gav~pPI~~sst~~~~~~~~~~~~~Y~R~~nPt~~~le~~la~LEgg~~a~~~sSGMaAi~~ 80 (384)
T d1cs1a_ 1 RKQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHL 80 (384)
T ss_dssp CCHHHHHHHTTTTCCTTTCBSSCCBCCCSBBCCSBTTBCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHH
T ss_pred CCHHHHEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHH
T ss_conf 97404214689898888998259844888746089776568743189887899999999998299706884372799999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d~~d~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~i~~i 160 (384)
T d1cs1a_ 81 VTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHL 160 (384)
T ss_dssp HHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTTCHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHH
T ss_pred HHHHCCCCCCEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCEECCHHHHHHH
T ss_conf 98631445550013465200246665421122333222356788799986216666279971456653010457887554
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 a~~~g~~~vVDNT~atP~~~~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ll~ 240 (384)
T d1cs1a_ 161 AREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLL 240 (384)
T ss_dssp HHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHH
T ss_pred HHHCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 54148679971553474546664468889998063003667774443345782665420011221122024500389996
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 rgL~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~~~~~a~~f~~~L~l~~ 320 (384)
T d1cs1a_ 241 RGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFT 320 (384)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHHTCSSSE
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHCCCCE
T ss_conf 12111478998999999999996445886446641223301489998750689861268752466999999998389155
Q ss_pred ---------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------9
Q 000711 482 ---------------------------------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGlEd~eDLi~Dl~~AL~aa~~g 384 (384)
T d1cs1a_ 321 LAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAANKG 384 (384)
T ss_dssp EBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHTCC
T ss_pred ECCCCCCCCCEECCCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCC
T ss_conf 5626687540430661015100799999866989296999865099999999999999986079
|
| >d1mtyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit {Methylococcus capsulatus [TaxId: 414]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Ferritin-like superfamily: Ferritin-like family: Ribonucleotide reductase-like domain: Methane monooxygenase hydrolase beta subunit species: Methylococcus capsulatus [TaxId: 414]
Probab=100.00 E-value=0 Score=28940.32 Aligned_cols=1 Identities=0% Similarity=-0.227 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~a~~~~~~~~~r~~~~~~~p~~rr~seYE~vT~~~qp~p~~~~~~~~~~~W~~~~~~g~p~y~~ 80 (384)
T d1mtyb_ 1 ERRRGLTDPEMAAVILKALPEAPLDGNNKMGYFVTPRWKRLTEYEALTVYAQPNADWIAGGLDWGDWTQKFHGGRPSWGN 80 (384)
T ss_dssp CCCCTTTCHHHHHHHHHHCCSSCSCSCCCTTTTSCCSSSSCCHHHHHHTTCSCCBTTSTTCCBCSCCSSCCTTCCCSSCG
T ss_pred CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCCCCHHHCCCCCCCCCEEEECCCCCCCCCC
T ss_conf 98667998778899861277886667776424467577896643510227889956617767647764613899998886
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~Tal~~~DW~~frDP~q~~yrtY~~~qae~e~~v~~~~d~~~~~~~~~~l~~~w~~~~L~~~l~p~r~~E~ga~~~~a~ 160 (384)
T d1mtyb_ 81 ETTELRTVDWFKHRDPLRRWHAPYVKDKAEEWRYTDRFLQGYSADGQIRAMNPTWRDEFINRYWGAFLFNEYGLFNAHSQ 160 (384)
T ss_dssp GGCSCCCSCTTCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGSCHHHHHTTTTTHHHHHHHHHHHHHHTTHH
T ss_pred CCCEEECCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 64313447746535801889999999999999999999999996696211999999999999860240799999987899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 i~r~~~g~~i~~a~~fqa~DeLR~aQ~i~~~~~~L~~~~pgf~~~~~~~k~~W~~dp~wQg~R~~vE~~l~~~~Dw~E~~ 240 (384)
T d1mtyb_ 161 GAREALSDVTRVSLAFWGFDKIDIAQMIQLERGFLAKIVPGFDESTAVPKAEWTNGEVYKSARLAVEGLWQEVFDWNESA 240 (384)
T ss_dssp HHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCSHHHHHHHHHCSTTHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 98646868999999998766888999999999999874789862337998886048065779999998987114499999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 vA~Nlv~dpll~~L~~~~f~~~~Aa~nGD~~t~~l~~s~q~D~~Rh~~~~~alvk~~l~~dpe~~~~Nr~llq~Wi~~W~ 320 (384)
T d1mtyb_ 241 FSVHAVYDALFGQFVRREFFQRLAPRFGDNLTPFFINQAQTYFQIAKQGVQDLYYNCLGDDPEFSDYNRTVMRNWTGKWL 320 (384)
T ss_dssp HHHHHTHHHHHHHHHHHTTHHHHGGGGTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTCTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99876488644899999999999997698047999999998999999899999999984585332668999999999999
Q ss_pred ---------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------9
Q 000711 482 ---------------------------------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~a~~Al~~~~pi~s~~p~~~~~~~~~~a~~~rv~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (384)
T d1mtyb_ 321 EPTIAALRDFMGLFAKLPAGTTDKEEITASLYRVVDDWIEDYASRIDFKADRDQIVKAVLAGLK 384 (384)
T ss_dssp HHHHHHHHHHGGGGGGSCTTSCCHHHHHHHHHHHHHHHHHHTGGGGTCCCCHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 9999999987687610677878889999999999987653024103665458899999972369
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=100.00 E-value=0 Score=28937.25 Aligned_cols=1 Identities=0% Similarity=0.005 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~g~~v~~fE~~~a~~~g~~~~v~~~SGt~Al~lal~~l~~~~gdeVi~p 80 (384)
T d1b9ha_ 1 KAPEFPAWPQYDDAERNGLVRALEQGQWWRMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVGPGTEVIVP 80 (384)
T ss_dssp CCCCCCCSSCCCHHHHHHHHHHHHTSCCBTTTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 98989898887999999999999739946568989999999999997969399967889999999998499988989981
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~t~~a~~~ai~~~g~~p~~~d~~~~~~~~d~~~~~~~i~~~tk~i~~~~~~g~~~d~~~i~~~~~~~~i~lieD~a~a~ 160 (384)
T d1b9ha_ 81 AFTFISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTPRTKVIMPVHMAGLMADMDALAKISADTGVPLLQDAAHAH 160 (384)
T ss_dssp SSSCTHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCEEC
T ss_conf 43223221222222233211233444435665441020023332222333322233443110222333356553104033
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ga~~~g~~~g~~g~~~~~Sf~~~K~i~~g~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n~rms~l~Aai 240 (384)
T d1b9ha_ 161 GARWQGKRVGELDSIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASV 240 (384)
T ss_dssp TCEETTEEGGGSSSCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHH
T ss_pred CCCCCCEECCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 60048983675520000024555434433431243224999998899985689876666432312356632235301213
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 g~~qL~~ld~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rd~l~~~L~~~GI~~~~~y~ 320 (384)
T d1b9ha_ 241 LRAQLARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRNALVDRLVEAGLPAFAAFR 320 (384)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCHHHHHHHHHHHHHTTCCEEECCC
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHCCCCEEEECC
T ss_conf 33343211321123433446666664225666443222222222333310001000222599999999987998553072
Q ss_pred ---------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------9
Q 000711 482 ---------------------------------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------------------------------s 482 (1338)
+
T Consensus 321 plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~e~ei~~I~~~i~~~l~~~ 384 (384)
T d1b9ha_ 321 AIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVARA 384 (384)
T ss_dssp CGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred CHHCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHCEEECCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 2213978885488744433344679899999839798647999998999999999999999609
|
| >d1hn0a1 a.102.3.2 (A:235-618) Chondroitin ABC lyase I {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Chondroitin AC/alginate lyase family: Hyaluronate lyase-like catalytic, N-terminal domain domain: Chondroitin ABC lyase I species: Proteus vulgaris [TaxId: 585]
Probab=100.00 E-value=0 Score=28933.99 Aligned_cols=1 Identities=0% Similarity=-0.958 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
.
T Consensus 1 ~~~~~~~~~~p~~~~T~~~~~~~d~ir~R~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ng~~~g~pi~~~~~~ 80 (384)
T d1hn0a1 1 EPEIQFHNVKPQLPVTPENLAAIDLIRQRLINEFVGGEKETNLALEENISKLKSDFDALNIHTLANGGTQGRHLITDKQI 80 (384)
T ss_dssp CCCCCCCCCSSCCCCCHHHHHHHHHHHHHHHHHHHSSCCCTTCCCCCCHHHHHHHHHTTCCEECTTSCEECCCEECTTGG
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH
T ss_conf 98777677899888896788899999999999872688652157777899999999985686456874247755562012
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~aY~~~g~~~~~~el~~~i~~~~d~l~dQg~~~gS~~~~~nww~~~i 160 (384)
T d1hn0a1 81 IIYQPENLNSQDKQLFDNYVILGNYTTLMFNISRAYVLEKDPTQKAQLKQMYLLMTKHLLDQGFVKGSALVTTHHWGYSS 160 (384)
T ss_dssp GGGCGGGSCHHHHHHHTTSEEHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHTTCSTTCCCSCCTTHHHHH
T ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCEECCCCCCCCCHHHHHH
T ss_conf 20577676533344431266899999999999999747887322399999999999999872320378777673112238
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 r~~~~a~~Lm~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~D~~~t~~~~~l~~~Ll~~d~~e~i~~l~~l~ 240 (384)
T d1hn0a1 161 RWWYISTLLMSDALKEANLQTQVYDSLLWYSREFKSSFDMKVSADSSDLDYFNTLSRQHLALLLLEPDDQKRINLVNTFS 240 (384)
T ss_dssp HHHHHHHHHTHHHHHHTTCHHHHHHHHHHHGGGGHHHHTCCCCTTTTCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 77988999987753226789999999987446864245676677850378999999999999985599199999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~l~~~~~~vt~G~~dGfk~DGS~~qH~~~Y~gYg~~~l~~~~~~~~ll~gT~f~~~~~~~~~l~~~l~~~~~~~~~~~~ 320 (384)
T d1hn0a1 241 HYITGALTQVPPGGKDGLRPDGTAWRHEGNYPGYSFPAFKNASQLIYLLRDTPFSVGESGWNNLKKAMVSAWIYSNPEVG 320 (384)
T ss_dssp HHHHHHHHSCCSTTCSEECTTSCEEETTEECHHHHHHHHHHHHHHHHHHTTSTTCCCHHHHHHHHHHHHHHHHTBSSBBC
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99887750478887886457887550678774269999999999999967998767989999999999999998454466
Q ss_pred ---------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------9
Q 000711 482 ---------------------------------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~GR~p~~~~~~~~~~~a~~~~al~g~~~~D~~~A~~ylrl~~~~~~~~~~~~~~~~~pa~~ 384 (384)
T d1hn0a1 321 LPLAGRHPFNSPSLKSVAQGYYWLAMSAKSSPDKTLASIYLAISDKTQNESTAIFGETITPASL 384 (384)
T ss_dssp GGGCTTCTTSCCBGGGGHHHHHHHHTTSTTSCCHHHHHHHHHHHTCCHHHHHHHHSSCCCCCCC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCC
T ss_conf 5555777899875543189999997078866799999999987347785416676158787879
|
| >d2fvka2 c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidine amidohydrolase Pyd2 species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Probab=100.00 E-value=0 Score=28934.48 Aligned_cols=1 Identities=200% Similarity=2.929 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
|
T Consensus 1 G~ID~HvH~rePg~~~~~~~ed~~tgs~AAa~GGvTtvi~mp~~~p~~~~~~~~~~~~~~~~~~~a~~~~~vdy~~~~~~ 80 (384)
T d2fvka2 1 GGIDAHVHVDEPLKLLGDVVDTMEHATRSAVAGGTTTVVAFSTQDVSKKGPSALAESVKLDVDEYSEQTLYCDYGLHLIL 80 (384)
T ss_dssp CEEECCBCCCCTTCTTSCCSCCHHHHHHHHHHTTEEEEEEEEECCTTCCSTTHHHHHHHHHHHHHTTSCCSSEEEEEEEC
T ss_pred CCEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE
T ss_conf 92538757788999987610329999999980895599989999999997899999999999999734850206578987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~el~~~~~~~~~~~~Gv~~~k~f~~~~~~~~~~~~l~~~l~~~~~~g~~v~~H~Ed~~~~~~~~~~~~~~ 160 (384)
T d2fvka2 81 FQIEKPSVEARELLDVQLQAAYNDYGVSSVKMFMTYPGLQISDYDIMSAMYATRKNGFTTMLHAENGDMVKWMIEALEEQ 160 (384)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHCCCEEEEESSSTTTBCCHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHC
T ss_conf 57787661277877678888705575441213325522344779999999999754982451322078898887777655
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 g~~~~~~~~~~rP~~aE~~av~r~~~la~~~g~~lhi~HiSt~~~ve~I~~ak~~G~~Vt~Et~ph~L~l~~~~~~~~~~ 240 (384)
T d2fvka2 161 GLTDAYYHGVSRPSIVEGEATNRAITLATTMDTPILFVHVSSPQAAEVIKQAQTKGLKVYAETCPQYALLSDAITRCHHH 240 (384)
T ss_dssp TCCSTTHHHHTSCHHHHHHHHHHHHHHHHHTTCCEEECSCCCHHHHHHHHHHHHHTCCEEEEECHHHHHCCGGGGSCC--
T ss_pred CCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECHHHHHCCCHHHCCCCC
T ss_conf 98774332454453213678999999887519607722335612367899853049978998376776146301024442
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~~~k~~PPLR~~~dr~aL~~~l~dG~Id~IaSDHaP~~~~eK~~~~~~~~~ 320 (384)
T d2fvka2 241 GEVESYGVGIDLSSISESPFTNPDDRFIGSKYICSPPIRPEGTQKSIWKGMNNGTFTIVGSDHCSYNYYEKTSTASKHRA 320 (384)
T ss_dssp ------CCSCCGGGSSSSTTTCTTCTTGGGGGCCSSCCCCTTSHHHHHHHHHHTSCSEECCCBCCCBSSCCSSTTBGGGG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCCCCCCCC
T ss_conf 22111223333222122223554310137516976999987789999977447964279627888788883355333333
Q ss_pred ---------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------9
Q 000711 482 ---------------------------------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------------------------------s 482 (1338)
+
T Consensus 321 ~~~~~~~~~df~~ap~G~~gle~~lpll~~~~v~~~~~~sl~~lv~~~s~nPAki~Gl~p~KGs 384 (384)
T d2fvka2 321 FDPENNKNGEFRYIPNGLPGVCTRMPLLYDYGYLRGNLTSMMKLVEIQCTNPAKVYGMYPQKGS 384 (384)
T ss_dssp EEGGGTEESCGGGSCCCBCCTTTHHHHHHHHTTTTTSSSCHHHHHHHHTHHHHHHTTCTTTSSS
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 3433345676310999974599899999999986489899999999996999999499998998
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=100.00 E-value=0 Score=28936.68 Aligned_cols=1 Identities=0% Similarity=-1.091 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~~pi~~~f~D~~l~~~~~~~l~~~~~~~~~~~~~l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~ 80 (384)
T d2omza2 1 LGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD 80 (384)
T ss_dssp CSCCCCSSCEEHHHHSCSHHHHHHHHHHTTCSSTTSEECHHHHTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCC
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCC
T ss_conf 97652589998331320889999999986777778863988957878998999898776242458999989681881798
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 l~~l~~L~~L~~L~L~~n~i~~i~~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 160 (384)
T d2omza2 81 ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 160 (384)
T ss_dssp CGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 86334771101030134333222211123343334433222222222222222211213466313100232222112222
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l 240 (384)
T d2omza2 161 FGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASL 240 (384)
T ss_dssp EEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGC
T ss_pred CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHCC
T ss_conf 21232201111245421101122243332110022353233303577447878644457787888877777896134325
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~ 320 (384)
T d2omza2 241 TNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS 320 (384)
T ss_dssp TTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCS
T ss_pred CCCCHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCEEECCCCCCC
T ss_conf 65341004467447877535546687754567445787732356522223323233333221000024676777788778
Q ss_pred ---------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------9
Q 000711 482 ---------------------------------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------------------------------s 482 (1338)
+
T Consensus 321 ~l~~l~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N~l~~l~~l~~l~~L~~L~L~~Na 384 (384)
T d2omza2 321 DISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 384 (384)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCCEE
T ss_pred CCCCCCCCCCCCEEECCCCCCCCCHHHCCCCCCCEEECCCCCCCCCHHHCCCCCCCEEECCCCC
T ss_conf 9845366898898989899899974670899999898979958998000039999996397895
|
| >d1vz6a_ d.154.1.2 (A:) Glutamate N-acetyltransferase 2 (ornithine acetyltransferase) {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DmpA/ArgJ-like superfamily: DmpA/ArgJ-like family: ArgJ-like domain: Glutamate N-acetyltransferase 2 (ornithine acetyltransferase) species: Streptomyces clavuligerus [TaxId: 1901]
Probab=100.00 E-value=0 Score=28865.06 Aligned_cols=1 Identities=0% Similarity=-0.293 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 sPkGf~~~~~~aGiK~~~r~DL~li~~~~~~~~AgvFT~N~~~AApV~~~r~~l~~~~~ravvvNSGnANA~TG~~G~~~ 80 (383)
T d1vz6a_ 1 TPRGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVADGQARGVVVLARNANVATGLEGEEN 80 (383)
T ss_dssp CCTTEEEEEECCCSSTTCCCCEEEEEESSCCEEEEEECCCTTCCHHHHHHHHHTTTSBCCEEEEEEEECCCSCHHHHHHH
T ss_pred CCCCEEEEEEEECCCCCCCCCEEEEEECCCCEEEEEECCCCCEECCCHHHHHHHCCCCCEEEEEECCCHHHHCCHHHHHH
T ss_conf 99859999999536679998689999579976999973687530151998987526884299995374111115888999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 a~~~~~~~A~~l~i~~~~Vl~aSTGVIG~~Lp~~kI~~~i~~l~~~l~~~~~~~AA~AImTTDt~pK~~~i~~~~~~i~G 160 (383)
T d1vz6a_ 81 AREVREAVARALGLPEGEMLIASTGVIGRQYPMESIREHLKTLEWPAGEGGFDRAARAIMTTDTRPKEVRVSVGGATLVG 160 (383)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEEEEESSCCCCHHHHHHHHTTCCCCSSSBCHHHHHHHTCSSCSSCEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHCCCCCCCEEEECCCHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEEEEECCCEEEE
T ss_conf 99999876553045753145512420101464113344332112232343366544453066420258999720424777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 iaKGsGMI~PnMATML~fi~TDa~i~~~~L~~~l~~~v~~sFN~ItVDGDtSTNDtv~~lAnG~~~~~~~~~f~~aL~~v 240 (383)
T d1vz6a_ 161 IAKGVGMLEPDMATLLTFFATDARLDPAEQDRLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGLAGEVDAGEFEEALHTA 240 (383)
T ss_dssp EEECSSSCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHTGGGBCSSSCCCSSCEEEEEEEEEEEECCHHHHHHHHHHH
T ss_pred EEECCHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 86014320555452478999615567688999999864145000654588887758999845875321078777778899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~LA~~Iv~DGEGATK~i~v~V~gA~s~~dA~~iAr~ia~S~LVKtA~~G~DpNWGRI~aAiG~~~~~~~~d~~~i~i~ 320 (383)
T d1vz6a_ 241 ALALVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVNSPLVKTAVHGCDPNWGRVAMAIGKCSDDTDIDQERVTIR 320 (383)
T ss_dssp HHHHHHHHHHTCTTCSSEEEEEEEEESSHHHHHHHHHHHHTCHHHHHHHHTTCCCHHHHHHHHHTCTTCTTCCTTTCEEE
T ss_pred HHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCHHHEEEE
T ss_conf 99999998636533225899998058999999999999752299998873458847777766423567766662425999
Q ss_pred --------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------9
Q 000711 482 --------------------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~v~~~g~~~~~~~~~~~~~~~~~m~~~ei~I~vdL~~G~~~~~~wtcDLt~~YV~INad 383 (383)
T d1vz6a_ 321 FGEVEVYPPKARGDQADDALRAAVAEHLRGDEVVIGIDLAIADGAFTVYGCDLTEGYVRLNSE 383 (383)
T ss_dssp ETTEEEECC-------CHHHHHHHHHHTTSSEEEEEEECCSSSEEEEEEEECCCHHHHHHHHC
T ss_pred ECCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEECCCCCCHHCCCCC
T ss_conf 899999963667887733559999987457848999997888922899907698322102689
|
| >d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Ammonium transporter superfamily: Ammonium transporter family: Ammonium transporter domain: Ammonium transporter AmtB species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=28863.62 Aligned_cols=1 Identities=0% Similarity=-0.161 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~d~~d~~~~l~~~~lV~~m~~~Gf~lle~G~vr~kn~~~~~~k~~~~~~~~~i~~~~~Gy~lafg~~~~~~g~~~~~~ 80 (383)
T d1u7ga_ 1 AVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLASGEGNNFFGNINWLM 80 (383)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTTHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSCSSSCCCSTTGG
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCCCCCHHH
T ss_conf 97576459999999999999999999998611144889999999999999999886034867868489988677750542
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~~~~~~vy~~~~hwvw~~g~l~~lG~~Dfa 160 (383)
T d1u7ga_ 81 LKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFA 160 (383)
T ss_dssp GTTCCTTCEETTEEHHHHHHHHHHHHHHHHHHHHHHHGGGBCHHHHHHHHHHHHHHTHHHHHHHHHSSCHHHHHTCCCSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHHHHHHHCCCHHHHEECCCCCCCCCCCEECC
T ss_conf 15765321222211567757633133310231103334665026753045676502156587420488753357863016
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 Gs~vVH~~gG~~aL~~~~~lgpR~~~~~~~~~~~~~~~~~lG~~iLw~gW~gFN~gs~~~~~~~~~~~~~nt~~a~a~~~ 240 (383)
T d1u7ga_ 161 GGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAI 240 (383)
T ss_dssp CTTTTHHHHHHHHHHHHHHSCCCCCTTCSSCCGGGHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 74366404209899888753875445656565678146667899999999873445435520588999998776788999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~k~~~~~~~nG~LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~~iDD~~~~~~vHg~~G 320 (383)
T d1u7ga_ 241 LGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCG 320 (383)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCEEEEHHHHH
T ss_conf 99999998735987799999886545540246755346156899886210778899999986601366465670321368
Q ss_pred --------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------9
Q 000711 482 --------------------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------------------s 482 (1338)
.
T Consensus 321 i~G~l~~glfa~~~~~g~~~~~~~~~~~ql~~Ql~g~~v~~~~~~~~~~ii~~il~~~~gLRV 383 (383)
T d1u7ga_ 321 IVGCIMTGIFAASSLGGVGFAEGVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRV 383 (383)
T ss_dssp HHHHHHHHHHTSGGGTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSBC
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 999988998267444665654541268999999999999999999999999999984728769
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=28862.93 Aligned_cols=1 Identities=0% Similarity=0.272 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~i~~~g~~~l~f~s~dYLGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g 80 (383)
T d1bs0a_ 1 SWQEKINAALDARRAADALRRRYPVAQGAGRWLVADDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSG 80 (383)
T ss_dssp CHHHHHHHHHHHCCGGGCCCCCCCCSBCSSSEEEETTEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTC
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 95799999999999819971112457888876998996899987653026678989999999999983898876553467
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~lE~~LA~~~g~e~al~~~SG~~an~~~i~al~~~~d~v~~d~~~h~si~~g~~~~~~~~~~~~hnd~~~le~~ 160 (383)
T d1bs0a_ 81 YSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARL 160 (383)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCCCEEECCHHHHHHHHH
T ss_conf 40689999999987519983588604422467778760699866885045528776342357875257340578899998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 l~~~~~~~~~vv~e~v~s~~G~i~pl~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka~g~~ 240 (383)
T d1bs0a_ 161 LASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVS 240 (383)
T ss_dssp HHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSSC
T ss_pred HCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 41457774499965787877723315679999886491998303123210377664558771774211245212233465
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 Gg~v~~~~~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~~~~~~~s~Ii 320 (383)
T d1bs0a_ 241 GAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLADSCSAIQ 320 (383)
T ss_dssp CEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCEECSCCSSBC
T ss_pred CCCCCCCHHHHHHHHHHCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEE
T ss_conf 54200321677899860446664244320689999999999985025788888888899998788755986579998879
Q ss_pred --------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------9
Q 000711 482 --------------------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~v~~g~~~~a~~~~~~L~~~Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~edid~l~~~L~~~g 383 (383)
T d1bs0a_ 321 PLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGNG 383 (383)
T ss_dssp CEEEESHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHHC
T ss_pred EEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 999799999999999999789149897489789998459998677799999999999998649
|
| >d1mhyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit {Methylosinus trichosporium [TaxId: 426]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Ferritin-like superfamily: Ferritin-like family: Ribonucleotide reductase-like domain: Methane monooxygenase hydrolase beta subunit species: Methylosinus trichosporium [TaxId: 426]
Probab=100.00 E-value=0 Score=28862.17 Aligned_cols=1 Identities=0% Similarity=-0.992 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~p~~~~~~~r~~~~f~~p~~rr~seYE~vt~~~Qp~p~~~~~~~~~~~W~~~f~~G~~~y~~~~ 80 (383)
T d1mhyb_ 1 KRGLTDPERAAIIAAAVPDHALDTQRKYHYFIQPRWKPLSEYEQLSCYAQPNPDWIAGGLDWGDWTQKFHGGRPSWGNES 80 (383)
T ss_dssp CCTTTCHHHHHHHHHHSCSSCSCCCCSTTTTSCCSSSSCCHHHHHHTTCSCCBTTSTTCCBCSCCSSCCTTCCCSSCGGG
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHCCCCCCCCCCEEECCCCCCCCCCC
T ss_conf 99999745888998616788666677656657868789554444202677985651355654783042079999987553
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 Tai~~~DW~afrDP~q~~yr~Yv~~qaeqe~~v~~~~d~~~~~~~~~~l~p~w~~~~L~~~l~p~r~~E~ga~m~~a~i~ 160 (383)
T d1mhyb_ 81 TELRTTDWYRHRDPARRWHHPYVKDKSEEARYTQRFLAAYSSEGSIRTIDPYWRDEILNKYFGALLYSEYGLFNAHSSVG 160 (383)
T ss_dssp CSCCCSCTTCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGSCHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEECCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 00143663654580088899999989999999999999999669620089999999999986131089999998889998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 r~a~~~~i~n~~~fqa~DeLR~aQ~l~~~~~~L~~~~~gf~~~~~~~k~~W~~dp~WQ~~R~~vE~~lva~~Dw~E~~vA 240 (383)
T d1mhyb_ 161 RDCLSDTIRQTAVFAALDKVDNAQMIQMERLFIAKLVPGFDASTDVPKKIWTTDPIYSGARATVQEIWQGVQDWNEILWA 240 (383)
T ss_dssp HHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCSHHHHHHHHHCGGGHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 64675899999999988788899999999999877468987056899889844886899999999887317659999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~NlV~e~ll~~L~~~~f~~~~Aa~nGD~~t~~l~~s~q~D~~R~~~w~~alvk~~l~~d~e~~~~Nr~~lq~Wi~~W~~~ 320 (383)
T d1mhyb_ 241 GHAVYDATFGQFARREFFQRLATVYGDTLTPFFTAQSQTYFQTTRGAIDDLFVYCLANDSEFGAHNRTFLNAWTEHYLAS 320 (383)
T ss_dssp HHHTHHHHHHHHHHTTTHHHHHTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHCCCCCTCTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 98879986589999999999999759705699999999899999999999999998469522155899999999999999
Q ss_pred --------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------9
Q 000711 482 --------------------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------------------s 482 (1338)
-
T Consensus 321 a~~A~~~l~pi~~~~p~~~~~~~~~~~~~a~~rv~~~~~~~~a~~i~~~~~~~~~~~~~~~~~ 383 (383)
T d1mhyb_ 321 SVAALKDFVGLYAKVEKVAGATDSAGVSEALQRVFGDWKIDYADKIGFRVDVDQKVDAVLAGY 383 (383)
T ss_dssp HHHHHHHHGGGGGGSCCCTTTTSHHHHHHHHHHHHHHHHHHTHHHHTCCCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
T ss_conf 999999867876047754431105789999999999885433154176546999999986469
|
| >d1bo1a_ d.143.1.2 (A:) Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: SAICAR synthase-like superfamily: SAICAR synthase-like family: Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta domain: Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28860.97 Aligned_cols=1 Identities=0% Similarity=0.138 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~r~~~~l~~~~~~Gi~~sv~~l~~~~~~~~L~~~dF~~~~k~~~~~~~~~~~~~~~~fkfk~Y~P~vF~~lR~~fgi~ 80 (383)
T d1bo1a_ 1 KLFRASEPILSVLMWGVNHTINELSNVPVPVMLMPDDFKAYSKIKVDNHLFNKENLPSRFKFKEYCPMVFRNLRERFGID 80 (383)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHTTSCCCSSCCGGGGTCEEEEEEECBSSSCSSSCSEEEEEEECHHHHHHHHHHTTCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEECHHHHHHHHHHCCCC
T ss_conf 94410238999999737988875228996000371003445897347777886779887079983799999999981989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~dy~~Sl~~~~~~~~~s~GkSGs~F~~t~D~rfiiKti~~~E~~~l~~~l~~Y~~h~~~~n~~TLL~k~~Gly~i~~~~ 160 (383)
T d1bo1a_ 81 DQDYQNSVTRSAPINSDSQGRCGTRFLTTYDRRFVIKTVSSEDVAEMHNILKKYHQFIVECHGNTLLPQFLGMYRLTVDG 160 (383)
T ss_dssp HHHHHHHHHSSCCEECCCC----CCEEECTTSSEEEECCCHHHHHHHHHHHHHHHHHHHTTTTCCSSCCEEEEEEEEETT
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHEEEEEEECC
T ss_conf 89999972788654345657767867880699689998579999999999899999998607875787634303787479
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~fvVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~~~~~~~~lKD~df~~~~~~i~l~~~~k~~l~~ql~~D~~fL~~ 240 (383)
T d1bo1a_ 161 VETYMVVTRNVFSHRLTVHRKYDLKGSTVAREASDKEKAKDLPTFKDNDFLNEGQKLHVGEESKKNFLEKLKRDVEFLAQ 240 (383)
T ss_dssp EEEEEEEEECSSCSSSCCSEEEEECCCSSSSCSCSGGGSSSCCEECHHHHHHTTCCCCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHH
T ss_conf 52799998424567765103676158632567675334555204656778764688230799999999999999999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~imDYSLLvGIh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (383)
T d1bo1a_ 241 LKIMDYSLLVGIHDVDRAEQEEMEVEERAEDEECENDGVGGNLLCSYGTPPDSPGNLLSFPRFFGPGEFDPSVDVYAMKS 320 (383)
T ss_dssp HTCCSCCEEEEEEEHHHHHHHHHHHHHHTTTTC-----------------------------------CCSCCTTTSTTE
T ss_pred CCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 78675043675512211112211001124555444555564322345789788302221553346644577765445445
Q ss_pred --------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------9
Q 000711 482 --------------------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------------------s 482 (1338)
.
T Consensus 321 ~~~~~~~~vyyiGIIDiLq~Y~~~KklE~~~Ksl~~~~g~~IS~v~P~~Ya~RF~~Fi~~I~~ 383 (383)
T d1bo1a_ 321 HESSPKKEVYFMAIIDILTPYDTKKKAAHAAKTVKHGAGAEISTVNPEQYSKRFNEFMSNILT 383 (383)
T ss_dssp EECSSTTEEEEEEECCSCC------------------CCCSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 678997599999999715779689999999999211889896127989999999999998649
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28861.49 Aligned_cols=1 Identities=0% Similarity=0.537 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~ 80 (383)
T d2v5za1 1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELGLETYKVNEV 80 (383)
T ss_dssp SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCCEECCTTTSCEESSCCEECTTCHHHHHHHHHTTCCEEECCCS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCCCEEECCCEEECCCCHHHHHHHHHCCCCCEECCCC
T ss_conf 98998978899999999986899789993499874506688778982895776696798769999999859962222676
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (383)
T d2v5za1 81 ERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLA 160 (383)
T ss_dssp SEEEEEETTEEEEECSSSCCCCSHHHHHHHHHHHHHHHHHHTTSCTTCGGGSTTHHHHHTSBHHHHHHHHCSSHHHHHHH
T ss_pred CCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 63477347643223444200011444554899999999866430011321013455544667999998704626778888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~i~~~~~v~~I~~~~~~v 240 (383)
T d2v5za1 161 TLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTRENV 240 (383)
T ss_dssp HHHHHHHHSSCTTTSBHHHHHHHHHTTTCHHHHHCSTTSTTSEEETTCTHHHHHHHHHHHGGGEEESCCEEEEECSSSSE
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHCCCEEEECCCCEEEEECCCEE
T ss_conf 87654220246302467889999886132212333246762133144154999999987598499368606899609969
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~v~~~~g~~~~ad~vI~a~p~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~~~ 320 (383)
T d2v5za1 241 LVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYME 320 (383)
T ss_dssp EEEETTSCEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTTSCCCTTHHHHHGGGTTCCBTTEEECSGGGCSSSTTSHH
T ss_pred EEEECCCCEEECCEEEECCCHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCHH
T ss_conf 99988997898799998989899951824899999999999975447754401354408768668556653466775067
Q ss_pred --------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------9
Q 000711 482 --------------------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------------------s 482 (1338)
|
T Consensus 321 ga~~~g~~~a~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~P~~p~~~~~i~~~~ 383 (383)
T d2v5za1 321 GAVEAGERAAREILHAMGKIPEDEIWQSEPESVDVPAQPITTTFLERHLPSVPGLLRLIGLTT 383 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCGGGSSCCCCCCSSSCCCCCCCCHHHHHCCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCC
T ss_conf 899987999999999862588044302484224655454545605224999987403167779
|
| >d1imva_ e.1.1.1 (A:) Pigment epithelium-derived factor, PEDF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Serpins superfamily: Serpins family: Serpins domain: Pigment epithelium-derived factor, PEDF species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28857.57 Aligned_cols=1 Identities=0% Similarity=-0.227 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~~L~~~l~~~~~~~Niv~SP~si~~~L~~l~~Ga~g~T~~el~~~L~~~~~~~ 80 (383)
T d1imva_ 1 TGALVEEEDPFFKVPVNKLAAAVSNFGYDLYRVRSSMSPTTNVLLSPLSVATALSALSLGADERTESIIHRALYYDLISS 80 (383)
T ss_dssp CCCCCCCCSHHHHSHHHHHHHHHHHHHHHHHHHHHHHCTTSCEEECHHHHHHHHHHHGGGCCHHHHHHHHHHTTGGGCCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCH
T ss_conf 99866554754458289999999999999999985129698199888999999999998647399999999738999984
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~l~~~~~~~~~~l~~~n~i~v~~~~~~~~~f~~~~~~~y~~~~~~~~~~~~~~~~~IN~wv~~~T~g~I~~~ 160 (383)
T d1imva_ 81 PDIHGTYKELLDTVTAPQKNLKSASRIVFEKKLRIKSSFVAPLEKSYGTRPRVLTGNPRLDLQEINNWVQAQMKGKLARS 160 (383)
T ss_dssp SCHHHHHHHHHHHHTSTTSCEEEEEEEEECTTCCCCHHHHHHHHHHHCCCCEECCSCHHHHHHHHHHHHHHHTTTCSCCC
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 89999999998750067763677877886168741668888887623764664354479999999999985075620364
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~t~~~lvna~~fk~~W~~~F~~~~t~~~~F~~~~~~~~~V~mM~~~~~~~~~~~~~~~~~~vv~lp~~~~~sm~ 240 (383)
T d1imva_ 161 TKEIPDEISILLLGVAHFKGQWVTKFDSRKTSLEDFYLDEERTVRVPMMSDPKAVLRYGLDSDLSCKIAQLPLTGSMSII 240 (383)
T ss_dssp CSCCCSSCSEEEEEEEEEECCEEECCCGGGCEEEEEESSSSCEEEEEEEEEEEEEEEEEEETTTTEEEEEEEETTTEEEE
T ss_pred CCCCCCCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCCCEEEEEEECCCCEEEE
T ss_conf 33438665124311104423202556533454464234798479830211245514566516655389994137973899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 iiLP~~~~~~l~~l~~~l~~~~l~~~~~~~~~~~v~v~lPkF~i~~~~dL~~~L~~lGl~~~F~~adfs~is~~~l~vs~ 320 (383)
T d1imva_ 241 FFLPLKVTQNLTLIEESLTSEFIHDIDRELKTVQAVLTVPKLKLSYEGEVTKSLQEMKLQSLFDSPDFSKITGKPIKLTQ 320 (383)
T ss_dssp EEEESSCCSCCHHHHTTCCHHHHHHHHHHCEEEEEEEEEECEEEEEEEECHHHHHTTTTTHHHHSCCCTTTCSSCCCEEE
T ss_pred EEEECCCCCCHHHHHHHCCHHHHHHHHHHCCCEEEEEEECEEEEEEECCHHHHHHHCCHHHHCCCCCCCCCCCCCCEEEE
T ss_conf 99962667886787664068899998750642279995021887540246675431343330345674556799947445
Q ss_pred --------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------9
Q 000711 482 --------------------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------------------s 482 (1338)
-
T Consensus 321 v~hka~ieVdE~G~~a~a~t~~~~~~~~~~~~f~~drPF~f~I~~~~t~~iLF~G~v~~P~~~ 383 (383)
T d1imva_ 321 VEHRAGFEWNEDGAGTTPSPGLQPAHLTFPLDYHLNQPFIFVLRDTDTGALLFIGKILDPRGP 383 (383)
T ss_dssp EEEEEEEEECSCEEECC--------CCCCCCEEECCSCEEEEEEETTTCCEEEEEEESCTTCC
T ss_pred EEEEEEEEECCCCCCCCCCCCEECCCCCCCCEEEECCCEEEEEEECCCCCEEEEEEECCCCCC
T ss_conf 789999999888611132222101567899679911999999999999968999995289997
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=0 Score=28855.92 Aligned_cols=1 Identities=0% Similarity=0.504 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
.
T Consensus 1 ~~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d 80 (383)
T d1gy8a_ 1 SHMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN 80 (383)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCC
T ss_conf 96979995787689999999999828998999826876555300133566677776541133332235541799784568
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 160 (383)
T d1gy8a_ 81 EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNA 160 (383)
T ss_dssp HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CC
T ss_pred HHHHHHHHHCCCEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 78866666224012043232443222223222233134554442232001110477533333332222334433222222
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~~~~~~~~~~~~~~~ip~ii~~~~~~~~~~~ 240 (383)
T d1gy8a_ 161 EPIDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQ 240 (383)
T ss_dssp CCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHSCC-
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 22123357899988886676799999999998599779971230515676666555666510027999999986103454
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~~~~~~~~~~~~~~i~Ni~s~~~~s~~el~~~ 320 (383)
T d1gy8a_ 241 RLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVREVIEV 320 (383)
T ss_dssp ----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEEHHHHHHH
T ss_pred CCHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCEEHHHHHHH
T ss_conf 20123333037835873785546899747856888999999999986402221111346753899689996359999999
Q ss_pred --------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------9
Q 000711 482 --------------------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------------------s 482 (1338)
+
T Consensus 321 i~~~~~~~~~~~~~~~~~~d~~~~~~d~~k~~k~LGw~P~~~l~e~i~~t~~~w~~~~~~~~~ 383 (383)
T d1gy8a_ 321 ARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQRTHPNGYA 383 (383)
T ss_dssp HHHHHCCCCCEEEECCCTTCCSEECBCCHHHHHHTCCCCSCCSHHHHHHHHHHHHHTCTTTTC
T ss_pred HHHHHCCCCCEEECCCCCCCCCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 999869997648899999986785357899999879966787999999999999986800489
|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28854.28 Aligned_cols=1 Identities=0% Similarity=-1.225 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~P~GL~N~GNtCY~NSvLQ~L~~ip~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~p~~~~~~l~ 80 (383)
T d2ayna1 1 MELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSIPPIILLQFLH 80 (383)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHHCSEECCHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 98995858898406999999999766999999985145315777645277999999999999865898457799999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~QqDa~Ef~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~g~~~~~~~c~~c 160 (383)
T d2ayna1 81 MAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCTES 160 (383)
T ss_dssp HHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC------------------CCHHHHHTCEEEEEEEEESSS
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCEEEEEEEEEEEEEEEECCC
T ss_conf 97376502555672245439999998788999998753203644211101211124667872054022899988883578
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~l~L~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~ 240 (383)
T d2ayna1 161 EEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQEEITKQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVN 240 (383)
T ss_dssp CCCCCBCCEEEESSEEEECSSSCCBHHHHHHHTTEECCCCEETTTTEECCEEEEEEEEECCSSEEEEEECBCCCCSSSSC
T ss_pred CCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEECCCEEECCCCCCE
T ss_conf 96551002231323210221010013456665201100124532376401202346502341453410220120567621
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~K~~~~v~fp~~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L 320 (383)
T d2ayna1 241 AKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDL 320 (383)
T ss_dssp CBCCCCCBCCSEEECGGGBCHHHHHHTTTTTGGGTCTTC----------------------CCCCCSCTTTTCCCSEEEE
T ss_pred EECCCEECCCCEEECHHHCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 33584774687664432146033013321024554432211013667554434542222236533344446789951999
Q ss_pred --------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------9
Q 000711 482 --------------------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~avi~H~G~s~~~GHY~a~vk~~~~~W~~~nD~~V~~v~~~~v~~~~~~~~~~~aYiLfY~r~ 383 (383)
T d2ayna1 321 QAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGPR 383 (383)
T ss_dssp EEEEEEESSSTTSSEEEEEEEEETTEEEEEBTTBCCCBCHHHHGGGGSSSSSCEEEEEEEECC
T ss_pred EEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCEEEECHHHHHHHHCCCCCCCEEEEEEEEC
T ss_conf 999999789999977089999999928999899508937999977527998893699999879
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=28781.72 Aligned_cols=1 Identities=0% Similarity=-1.224 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~i~l~~G~Pd~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~ 80 (382)
T d1u08a_ 1 PLIPQSKLPQLGTTIFTQMSALAQQHQAINLSQGFPDFDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLY 80 (382)
T ss_dssp CCCCCCSCCCCCCCHHHHHHHHHHHTTCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHCCCCCCCHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 98824547799986999999996269978854988999778999999999985599889898677999999999999984
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 160 (382)
T d1u08a_ 81 GYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSERT 160 (382)
T ss_dssp SCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTE
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHCCCC
T ss_conf 99988772378646358889998751035640599731443213455443133200012214335689999731213574
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~R 240 (382)
T d1u08a_ 161 RLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWK 240 (382)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGC
T ss_pred CEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC
T ss_conf 08998798765454565332012332210243202430320210343345542000123468579985035521478665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 iG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~p~gg~~~~~ 320 (382)
T d1u08a_ 241 VGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLLV 320 (382)
T ss_dssp CEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTSSSCEECCCCBSSEEEE
T ss_pred CHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEEEE
T ss_conf 11010210137888752022323456433322333222206777789999876300002232037857956894679989
Q ss_pred -------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~~~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~~~~e~l~~al~RL~~l 382 (382)
T d1u08a_ 321 DYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQL 382 (382)
T ss_dssp ECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTTC
T ss_pred ECCCCCCCCHHHHHHHHHHHCCEEEECCHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHCC
T ss_conf 56888999999999999997999998224527899989889999809999999999998179
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=28780.32 Aligned_cols=1 Identities=0% Similarity=-1.856 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~r~~~~~~s~~~~i~~~a~~~~~~G~~vi~l~~g~p~~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~ 80 (382)
T d1b5pa_ 1 MRGLSRRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEK 80 (382)
T ss_dssp CCCCCHHHHHCCCCHHHHHHHHHHHHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 93788999848988899999999999967998289999989999889999999999865886899987889999999764
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 160 (382)
T d1b5pa_ 81 FRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRA 160 (382)
T ss_dssp HHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTT
T ss_pred HHHHCCCCCCCCCCEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHH
T ss_conf 44303411265534056778999999999967997989987998477999999845847998554101458999999973
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G 240 (382)
T d1b5pa_ 161 ITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTG 240 (382)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGG
T ss_pred CCCCCEEEEECCCCCCCCHHCCHHHHHHHHHHHHHCCEEEEEECCCCCEECCCCCCCHHHCCCCCEEEEECCHHHCCCCH
T ss_conf 78897699989997976600799999999999998590899976641232178988887818997799946346451807
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 lR~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~p~gg 320 (382)
T d1b5pa_ 241 WRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGA 320 (382)
T ss_dssp GCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSBT
T ss_pred HHEEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCE
T ss_conf 56699998999999999998750357653222222222233121157899999999862267898876449767568941
Q ss_pred -------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~e~gV~v~PG~~F~~~~~iRis~~~~~e~l~~al~rl~~~L 382 (382)
T d1b5pa_ 321 FYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYATSEENLRKALERFARVL 382 (382)
T ss_dssp TEEEEECTTTCSSHHHHHHHHHHTTEECEESGGGTCTTEEEEECCSCHHHHHHHHHHGGGGC
T ss_pred EEEEEECCCCCCCHHHHHHHHHHCCEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHC
T ss_conf 79968578999999999999997897999572258999699997499999999999999869
|
| >d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=100.00 E-value=0 Score=28779.20 Aligned_cols=1 Identities=0% Similarity=0.238 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (382)
T d1wkva1 1 ALADISGYLDVLDSVRGFSYLENAREVLRSGEARCLGNPRSEPEYVKALYVIGASRIPVGDGCSHTLEELGVFDISVPGE 80 (382)
T ss_dssp CEEEGGGGTTHHHHCCSSTTHHHHHHHHHHTEEECBSSGGGCHHHHHHHHHHTCSEEEBSSSCEEETTTTTTTCCCSCTT
T ss_pred CCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCEECCCCCC
T ss_conf 96421015677775324278999999986035030579975478999999844553556776531166526210489854
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~l~~~~~~~PTPLvrl~l~~~~G~~IylKlE~~NPtGgSfKdR~A~~~i~~A~~~~~~g~~VVeaSSGN~GiAlA 160 (382)
T d1wkva1 81 MVFPSPLDFFERGKPTPLVRSRLQLPNGVRVWLKLEWYNPFSLSVKDRPAVEIISRLSRRVEKGSLVADATSSNFGVALS 160 (382)
T ss_dssp CEESSHHHHHHHSCSCCEEECCCCCSTTEEEEEEEGGGSTTTSBTTHHHHHHHHHHHTTTSCTTCEEEEECCHHHHHHHH
T ss_pred EEECCHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHH
T ss_conf 67579899856899998777877888898999985478999876299999999999985268999999858759999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~aa~lGik~~Iv~P~~~~~~K~~~ira~GAeVi~~~~~~~~~~~~~~a~~~a~~~~~~~~~q~~N~~~~~~h~~ttg~E 240 (382)
T d1wkva1 161 AVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTVHLLPRVMKDSKNEGFVHVNQFYNDANFEAHMRGTARE 240 (382)
T ss_dssp HHHHHTTCEEEEEEETTSCHHHHHHHHHTTCEEEEETTCSSSGGGHHHHHHHHHHHCCEECCTTTCHHHHHHHHHTHHHH
T ss_pred HHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEHHHCCHHH
T ss_conf 99998499779996200112222222356861154375105679999876520245754332345430232112112178
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 I~eQl~~~~~~~d~vv~~vGtGG~~~Gi~~~lk~~~p~vkiigVep~~~~~i~g~~~i~~g~~~~~~~d~~~~i~~Vsd~ 320 (382)
T d1wkva1 241 IFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPGIRRVETGMLWINMLDISYTLAEVTLE 320 (382)
T ss_dssp HHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHCTTCEEEEEEECTTCCCTTCCCGGGCCSHHHHSCCCCEEEEECHH
T ss_pred HHHHHHCCCCCEEEEEEECCCCCCCCCCEEEHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHH
T ss_conf 99996467873167897416654233320101231876623675244444445641024576575646644299997999
Q ss_pred -------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------s 482 (1338)
-
T Consensus 321 Eai~a~r~La~~EGI~vgpSSGaavaaa~k~a~~~~~~~~~vVvIlcD~G~rYlstiyN~~~ 382 (382)
T d1wkva1 321 EAMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEGDLEPGDYVVVVPDTGFKYLSLVQNALE 382 (382)
T ss_dssp HHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHTTCSCSEEEEEEECBBGGGCHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCC
T ss_conf 99999999999819888189999999999998640689998999988897432676426789
|
| >d1ea9c3 c.1.8.1 (C:122-503) Maltogenic amylase, central domain {Bacillus sp., cyclomaltodextrinase [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Bacillus sp., cyclomaltodextrinase [TaxId: 1409]
Probab=100.00 E-value=0 Score=28778.54 Aligned_cols=1 Identities=0% Similarity=-1.590 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~p~W~~~~v~Y~i~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~Gd~~gi~~kLdylk~LGv~~i~l~Pi~~~~~~~ 80 (382)
T d1ea9c3 1 FQPPAWVKDAIFYQIFPERFANGDTRNDPEGTLPWGSADPTPSCFFGGDLQGVIDHLDHLSKLGVNAVYFTPLFKATTNH 80 (382)
T ss_dssp CCCCTHHHHCCCCEECSTTSCCCCSCSCSSCCSCCCSSSCCCSSCCCCCHHHHHHTHHHHHHHTCSEEEECCCSSCSSSS
T ss_pred CCCCCCCCCCEEEEEECCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC
T ss_conf 97986023886999971220379988786676434555777676678189999985699986799889969770178877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 gY~~~~~~~id~~~Gt~~df~~lv~~~h~~gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (382)
T d1ea9c3 81 KYDTEDYFQIDPQFGDKDTLKKLVDLCHERGIRVLLDAVFNHSGRTFPPFVDVLKNGEKSKYKDWFHIRSLPLEVVDGIP 160 (382)
T ss_dssp TTSCSCTTCCCTTTCCHHHHHHHHHHHTTTTCEEEEECCCSBCCTTTHHHHHHHTTTTTCTTTTSSCBCSSSCCCTTSCC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 87754453544366777899999999986264378763013441348325556406876544430013464432235763
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~d~n~~~~~v~~~l~~~~~~w~~~~gvDGfR~Da~~~~~~~~~~~~~~~~~~~~p~~~~~~e~~~~~~~ 240 (382)
T d1ea9c3 161 TYDTFAFEPLMPKLNTEHPDVKEYLLKAAEYWIRETGIDGWRLDVANEVSHQFWREFRRVVKQANPDAYILGEVWHESSI 240 (382)
T ss_dssp SBCBSSSCTTSBBCCTTSHHHHHHHHHHHHHHHHHHCCSEEEETTCTTSCHHHHHHHHHHHHHHCTTCEEEECCCSCCTT
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCC
T ss_conf 22233344345742301388999999987515653146678743620076566545666554008981588543145532
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nHD~~r~~~~~~~~~~~~~~a~~ 320 (382)
T d1ea9c3 241 WLEGDQFDAVMNYPFTNAVLDFFIHQIADAEKFSFMLGKQLAGYPRQASEVMFNLLDSHDTARLLTQADGDKRKMKLAVL 320 (382)
T ss_dssp TTTTTSCSEEBCHHHHHHHHHHTTSCCSCHHHHHHHHHHTTTTSCHHHHHTCEECSCCTTSCCHHHHHCSCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 13676432212343004667655046421567899999999854020654405520367666312246787999999999
Q ss_pred -------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~l~~pG~P~Iy~G~E~g~~~~~~~~~r~~~~w~~~~~~~~l~~~~~~L~~lR~~~paL~~G 382 (382)
T d1ea9c3 321 FQFTYFGTPCIYYGDEVGLDGGHDPGCRKCMEWDETKHDKDLFAFYQTVIRLRQAHAALRTG 382 (382)
T ss_dssp HHTTSSSEECCCSSCSSCCCCCSHHHHTCCCCCCTTSCCHHHHHHHHHHHHHHHHCSHHHHC
T ss_pred HHHHCCCCCEEECCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHCCC
T ss_conf 99971798787755754888999977648878877765389999999999999568975189
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=28780.83 Aligned_cols=1 Identities=0% Similarity=-0.327 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~l~~PGP~~v~~~V~~Am~~~~~~hr~~~f~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~ 80 (382)
T d2bkwa1 1 KSVDTLLIPGPIILSGAVQKALDVPSLGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILS 80 (382)
T ss_dssp CCCCEECSSSSCCCCHHHHHTTSCCCCCTTSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCT
T ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHH
T ss_conf 98656427899788799999727326897769999999999999999985334898719999386899999999998876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~gd~vlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~~~~~~~~ 160 (382)
T d2bkwa1 81 KAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQA 160 (382)
T ss_dssp TCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHH
T ss_pred CCCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHEEEEECCCCCCCCCCCHHHHHH
T ss_conf 07998248997312334434311100133333223677775641579998630110100232112246302441233332
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~vDa~qs~g~~pid~~~~giD~~~~s~~K~l~gP~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (382)
T d2bkwa1 161 IKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWT 240 (382)
T ss_dssp HHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf 01334310256302455322123233557569950566667689750255405999864331035888663011122100
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~~ 320 (382)
T d2bkwa1 241 PIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVY 320 (382)
T ss_dssp HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEE
T ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCEEEEC
T ss_conf 23311345556535677577789999999999876324557999999999999764115532234683011587379970
Q ss_pred -------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~~~~~L~~~gi~i~~G~~~~~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~~L~~~ 382 (382)
T d2bkwa1 321 VADPPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQRK 382 (382)
T ss_dssp CSCHHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC-
T ss_pred CCCHHHHHHHHHHCCEEEECCCCHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 89989999999978939977877311699899858868997999999999999999997739
|
| >d1t1ua1 c.43.1.3 (A:20-401) Choline O-acetyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-dependent acyltransferases superfamily: CoA-dependent acyltransferases family: Choline/Carnitine O-acyltransferase domain: Choline O-acetyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=0 Score=28781.87 Aligned_cols=1 Identities=0% Similarity=-0.958 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 e~~LP~LPvP~L~~Tl~ryL~s~~Pl~s~ee~~~t~~~v~~F~~~~g~G~~Lq~~L~~~~~~~~nwl~~~W~~~~YL~~R 80 (382)
T d1t1ua1 1 ELDLPKLPVPPLQQTLATYLQCMQHLVPEEQFRKSQAIVKRFGAPGGLGETLQEKLLERQEKTANWVSEYWLNDMYLNNR 80 (382)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHTSTTSHHHHHHHHHHHHHHHSSSTTHHHHHHHHTTTCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCC
T ss_conf 99998899999999999999985445999999999999999751698179999999987446878607778765016788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~pL~~~~n~~~~~~~~~~~~~~~q~~rAA~l~~~~l~f~~~l~~~~l~~~~~~~~~~~~plcM~qy~~lF~t~RiP~~~~ 160 (382)
T d1t1ua1 81 LALPVNSSPAVIFARQHFQDTNDQLRFAACLISGVLSYKTLLDSHSLPTDWAKGQLSGQPLCMKQYYRLFSSYRLPGHTQ 160 (382)
T ss_dssp SCHHHHTCCEEEECCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTCSCCTTSSSCCSSSCCCCTTGGGTTTEEEECCSSS
T ss_pred CCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCHHHHHHHCCCEECCCCCC
T ss_conf 78650056612105666876037999999999999999999756656861210224898667899998728670568998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 D~l~~~~~~~~~~~~HIvVl~~g~~y~v~v~~~~~~l~~~ei~~~l~~I~~~~~~~~~~~~~ig~LT~~~Rd~Wa~~r~~ 240 (382)
T d1t1ua1 161 DTLVAQKSSIMPEPEHVIVACCNQFFVLDVVINFRRLSEGDLFTQLRKIVKMASNEDERLPPIGLLTSDGRSEWAKARTV 240 (382)
T ss_dssp CEEEECCCSSSSCCCEEEEEETTEEEEEESEETTEECCHHHHHHHHHHHHHHHTCSTTCCCCGGGGGGSCHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCCEEEEEECCEEEEEEEEECCEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 74665576778898779999899899999998990688999999999999624455556888450555871999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 L~~~~~N~~~L~~Ie~alfvv~LDd~~~~~~~e~~~~~~~l~g~~~~~~~~NRW~DKslq~IV~~nG~~g~~~EHS~~DG 320 (382)
T d1t1ua1 241 LLKDSTNRDSLDMIERCICLVCLDGPGTGELSDTHRALQLLHGGGCSLNGANRWYDKSLQFVVGRDGTCGVVCEHSPFDG 320 (382)
T ss_dssp HTTSHHHHHHHHHHHTCSCEEEECCCCSSCCCHHHHHHHHHHTTSTTTTTTSCCTTBSEEEEECTTSCEEEEECSTTCCH
T ss_pred HHCCCCHHHHHHHHHHCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCEEEECCCCCCCH
T ss_conf 85596158999999866489992799988701689999986178778998610677873799978986898504676249
Q ss_pred -------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~L~f~l~~~~~~~I~~a~~~~~~~~~dl 382 (382)
T d1t1ua1 321 IVLVQCTEHLLKHMMTSNKKLVRADSVSELPAPRRLRWKCSPETQGHLASSAEKLQRIVKNL 382 (382)
T ss_dssp HHHHHHHHHHHHHHTCCTTSCSSSCSCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHE
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999998640677888887778999658788658899999999999999997349
|
| >d1xl7a1 c.43.1.3 (A:11-392) Peroxisomal carnitine O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-dependent acyltransferases superfamily: CoA-dependent acyltransferases family: Choline/Carnitine O-acyltransferase domain: Peroxisomal carnitine O-octanoyltransferase, COT species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=28785.73 Aligned_cols=1 Identities=100% Similarity=0.470 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 e~Tf~~q~~LP~LPvP~Le~Tl~ryL~s~~pl~~~~e~~~t~~~v~~F~~~~G~~Lq~~L~e~a~~~~NWl~~~W~~~~Y 80 (382)
T d1xl7a1 1 ERTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKKTEEIVQKFQEGAGKRLHQKLLERARGKRNWLEEWWLNVAY 80 (382)
T ss_dssp CCTTTTGGGCCCCCCCCHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCTTSSHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 96431427799898999899999999986566999999999999999974939999999998740698850587867753
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 L~~R~pl~~~~n~~~~~~~~~~~~~~~~~~q~~raA~l~~~~~~f~~~l~~~~l~~~~~~~~plcm~qy~~lF~t~RiPg 160 (382)
T d1xl7a1 81 LDVRIPSQLNVNFVGPCPHFEHYWPAREGTQLERGSMMLWHNLNYWQLLRREKLPVHKSGNTPLDMNQFRMLFSTCKVPG 160 (382)
T ss_dssp TSCCSCHHHHTCEEEECGGGGTTCCCCTTCHHHHHHHHHHHHHHHHHHHHTTCSCCCEETTEECCCGGGGGTSSEEEECC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCEEECHHHHHHHCCCEECCC
T ss_conf 25577864555666766556777885500699999999999999998740365471230998760799997612771689
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~D~~~~~~~~~~~~~~~~HIvVl~~g~~ykv~v~~~~~~~s~~el~~~l~~I~~~~~~~~~~~~vg~LTt~~Rd~WA~ 240 (382)
T d1xl7a1 161 ITRDSIMNYFKTESEGHCPTHIAVLCRGRAFVFDVLHEGCLITPPELLRQLTYIHKKCSNEPVGPSIAALTSEERTRWAK 240 (382)
T ss_dssp SSCCEEEECCCCTTTCCCCCEEEEEETTEEEEEESEETTEECCHHHHHHHHHHHHHHHHTSCCCCCGGGGGGSCHHHHHH
T ss_pred CCCCCEEECCCCCCCCCCCCEEEEEECCCEEEEEEEECCEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 98772002355556789886699997893089999329908889999999999997354678887755067656479999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~R~~L~~~~~~N~~~L~~Ie~AlfvvcLD~~~~~~~~e~~~~~~~~~l~G~~~NRW~DKs~q~IV~~nG~~G~~~EHS~~ 320 (382)
T d1xl7a1 241 AREYLISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEMLLGGDPSVRWGDKSYNLISFANGIFGCCCDHAPY 320 (382)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHSSCEEEECCCCCCCCSSCCHHHHHHHHSSCGGGCCTTBSCEEEECTTSCEEEEECSSSC
T ss_pred HHHHHHHCCHHHHHHHHHHHHCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCH
T ss_conf 99997617842699999987446888613568889858999999963859873327766713899689888987368716
Q ss_pred -------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------s 482 (1338)
|
T Consensus 321 DG~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~p~~L~f~l~~~i~~~I~~A~~~~~k~as 382 (382)
T d1xl7a1 321 DAMVMVNIAHYVDERVLETEGRWKGSEKVRDIPLPEELVFTVDEKILNDVSQAKAQHLKAAS 382 (382)
T ss_dssp CTHHHHHHHHHHHHHHHHTTTCCCSCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCC
T ss_conf 69999999999999976127878888887789997577896698999999999999998509
|
| >d1wzla3 c.1.8.1 (A:121-502) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]
Probab=100.00 E-value=0 Score=28779.44 Aligned_cols=1 Identities=0% Similarity=-1.157 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~P~w~~~~viY~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~gi~~kLdyl~~lGi~~I~l~Pv~~~~~ 80 (382)
T d1wzla3 1 VFTTPEWAKEAVIYQIFPERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVTALYFTPIFASPS 80 (382)
T ss_dssp SCCCCSGGGGCCEEEECGGGTCCCCGGGCCTTCCCCCTTCCCCTTCCCCCCHHHHHHTHHHHHHHTCCEEEECCCEECSS
T ss_pred CCCCCCCCCCCEEEEEECCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 97998420288799997024137998778766643344566655777785899999831999977997899798677875
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~gY~~~~~~~vd~~~Gt~~d~~~lv~~~H~~Gi~vilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (382)
T d1wzla3 81 HHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSR 160 (382)
T ss_dssp SSCCSCSEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEECCSBCCTTSHHHHHHHHHGGGCTTGGGBCBSSSSCCCSSC
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 45776556320236788788999999999752451576321013333333331001037654246643003654566789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~dLn~~n~~v~~~~~~~~~~w~~~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~p~~~~i~e~~~~~~ 240 (382)
T d1wzla3 161 TNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWMEQGIDGWRLDVANEVDHAFWREFRRLVKSLNPDALIVGEIWHDAS 240 (382)
T ss_dssp CSBCBSSSSCTTCBBBCTTSHHHHHHHHHHHHHHHHTTCCEEEETTGGGSCHHHHHHHHHHHHHHCTTCEEEECCSSCCG
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCHHHCCHHHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 74444344556678507799999999999999999758875034334335645556789998752884478620035652
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~ 320 (382)
T d1wzla3 241 GWLMGDQFDSVMNYLFRESVIRFFATGEIHAERFDAELTRARMLYPEQAAQGLWNLLDSHDTERFLTSCGGNEAKFRLAV 320 (382)
T ss_dssp GGCSSSSCSEEBCHHHHHHHHHHHTSCCSCHHHHHHHHHHHHTTSCHHHHTTCEEESCCTTSCCHHHHTTTCHHHHHHHH
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCHHHHCCCCHHHHHHHH
T ss_conf 02203342023302677899986514764314678888753201643245663123058775536765389799999999
Q ss_pred -------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~llt~pG~P~iy~G~E~g~~g~~~~~~r~~~~W~~~~~~~~l~~~~~~L~~lR~~~paL~r 382 (382)
T d1wzla3 321 LFQMTYLGTPLIYYGDEIGMAGATDPDCLRPMIWEEKEQNRGLFEFYKELIRLRHRLASLTR 382 (382)
T ss_dssp HHHHHSSSEEEEETTGGGTCCCCSTTGGGCCCCCCGGGSCHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHCC
T ss_conf 99998089878973730277899995445788988655570899999999999830986488
|
| >d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Neopullulanase, central domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=0 Score=28780.30 Aligned_cols=1 Identities=0% Similarity=-0.028 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~P~w~~~~viY~v~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~gi~~kldyl~~LGv~~i~L~Pi~~~~~ 80 (382)
T d1j0ha3 1 DLFEAPDWVKDTVWYQIFPERFANGNPSISPEGSRPWGSEDPTPTSFFGGDLQGIIDHLDYLVDLGITGIYLTPIFRSPS 80 (382)
T ss_dssp GSCCCCGGGGGCCEEEECGGGTCCSCGGGSCTTCCCTTSSCCCSSCCCCCCHHHHHHTHHHHHHHTCCEEEECCCEECSS
T ss_pred CCCCCCCCHHCCEEEEEECCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 98899964107779999755312799887766665345557766766785899999867999976998899698876876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~gy~~~d~~~vd~~~Gt~~~~~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (382)
T d1j0ha3 81 NHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPLQTEPR 160 (382)
T ss_dssp SSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTCHHHHHHHHHGGGCTTGGGBCBSSSSCCCSSS
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 56877565643278879979999999986423643787752102333344312220368745557742224566545663
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~dln~~n~~vr~~l~~~~~~wi~~~giDGfR~Da~~~~~~~~~~~~~~~~~~~~p~~~~i~e~~~~~~ 240 (382)
T d1j0ha3 161 PNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLDVANEIDHEFWREFRQEVKALKPDVYILGEIWHDAM 240 (382)
T ss_dssp CSBCBSTTCTTSBBBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSCHHHHHHHHHHHHHHCTTCEEEECCSSCCG
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
T ss_conf 23332356777764440769999999998886766441157984453216645534444433202898522343234512
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~R~~~~~~~~~~~~~~a~ 320 (382)
T d1j0ha3 241 PWLRGDQFDAVMNYPFTDGVLRFFAKEEISARQFANQMMHVLHSYPNNVNEAAFNLLGSHDTSRILTVCGGDIRKVKLLF 320 (382)
T ss_dssp GGCSSSSCSEEBCHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTSCHHHHHTCBCBSCCTTSCCHHHHTTTCHHHHHHHH
T ss_pred HHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 34213554410155310456654303543201221022210113654467662320467777741213488599999999
Q ss_pred -------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------9
Q 000711 482 -------------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~lllt~pG~P~iy~G~E~G~~~~~~~~~r~~~~W~~~~~~~~l~~~~k~L~~lR~~~paL~r 382 (382)
T d1j0ha3 321 LFQLTFTGSPCIYYGDEIGMTGGNDPECRKCMVWDPMQQNKELHQHVKQLIALRKQYRSLRR 382 (382)
T ss_dssp HHHHHSSSCCEEETTGGGTCCCCSTTGGGCCCCCCTTTSCHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHCCCCCEEECCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHCC
T ss_conf 99998179888986863286899880103577888654576999999999999842997586
|
| >d3bvua3 c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: 7-stranded beta/alpha barrel superfamily: Glycoside hydrolase/deacetylase family: alpha-mannosidase domain: Golgi alpha-mannosidase II species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=100.00 E-value=0 Score=28708.75 Aligned_cols=1 Identities=100% Similarity=0.072 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~q~~~~~~~~~~~~~~~kl~VhlV~HsH~D~gWl~t~~e~~~~~~~~i 80 (381)
T d3bvua3 1 CQDVVQDVPNVDVQMLELYDRMSFKDIDGGVWKQGWNIKYDPLKYNAHHKLKVFVVPHSHNDPGWIQTFEEYYQHDTKHI 80 (381)
T ss_dssp CCCSSSCCCCCSEEHHHHHHHCCCCCCCCSSSTTSCCCCCCGGGCBTTBCEEEEEEEEEECCSSSSSCHHHHHHHTHHHH
T ss_pred CCHHHHHCCCCCEEHHHHHHHCCCCCCCCCCCCCCCCEEECHHHCCCCCCCEEEEECCCCCCHHHCCCHHHHHHHHHHHH
T ss_conf 94366405766622687886521538999716677512205421476788379993877888002375999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 l~~~l~~l~~~p~~~F~~~~~~~~~~w~~~~~pe~~~~vk~lV~~GrlEivgg~wv~~De~~~~~es~Irql~~G~~~l~ 160 (381)
T d3bvua3 81 LSNALRHLHDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLK 160 (381)
T ss_dssp HHHHHHHHHHCTTCCEEECCHHHHHHHHTTSCHHHHHHHHHHHHTTSEEESSCCSSCBCSSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEECHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEECCEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999879997799835389999999749999999999998798799687121463457997999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~fG~~p~~~w~~D~FGhs~~lp~il~~~Gi~~~~~~R~~~~~~~~~~~~k~lef~w~~~W~~~~~s~ilth~~~~~~Y~ 240 (381)
T d3bvua3 161 QFMNVTPTASWAIAPFGHSPTMPYILQKSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQIWDNKGDTALFTHMMPFYSYD 240 (381)
T ss_dssp HHHCCCCCEEEECSSSSBCTHHHHHHHTTTCCEEEECCCCHHHHHHHHHTTCSEEEECCTTCSSCTTCEEEEECCSSCSS
T ss_pred HHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCHHHHCCCCCCCCCCEEECCCCCCCCCCCEEEECCCCCCCC
T ss_conf 97599973589638887657789999856988699974135542005201466504304666899880457516555668
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~p~~~~~d~~~~~~f~f~~~~~~~~~~p~~~~~~~i~~~nv~~r~~~~~~~~~~~a~~~~tn~vL~p~G~Df~y~~a~~w 320 (381)
T d3bvua3 241 IPHTCGPDPKVCCQFDFKRMGSFGLSCPWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEW 320 (381)
T ss_dssp GGGTSSSCHHHHGGGCGGGSSTTSCCCTTSCCCCCCCTTTHHHHHHHHHHHHHHHHTTSSSSEEEEEEEEETCSCSHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHH
T ss_conf 85567887211345442123455777876668766625589999999999999986216887389816668787761037
Q ss_pred ------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------9
Q 000711 482 ------------------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------------------s 482 (1338)
+
T Consensus 321 ~~~~~n~~kli~~iN~~~~~~v~i~~ST~~~Yf~al~~~~~~~~~~~P~~~gDFfpYad~~ 381 (381)
T d3bvua3 321 DVQRVNYERLFEHINSQAHFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRS 381 (381)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCEEEEECCHHHHHHHHHHHHHTTSCCCCEEESCBCSCBSST
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 7888769999999971888881899889999999999987524778877678876788899
|
| >d1by7a_ e.1.1.1 (A:) Plasminogen activator inhibitor-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Serpins superfamily: Serpins family: Serpins domain: Plasminogen activator inhibitor-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28705.22 Aligned_cols=1 Identities=0% Similarity=-0.127 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~l~~~~~~Fa~~L~~~l~~~~~~~N~v~SP~si~~~L~~l~~Ga~g~T~~el~~~L~~~~~~~~~~~~~~~~~~l~~~l 80 (381)
T d1by7a_ 1 EDLCVANTLFALNLFKHLAKASPTQNLFLSPWSISSTMAMVYMGSRGSTEDQMAKVLQFNEVGAAADKIHSSFRSLSSAI 80 (381)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHSSSSCEEECHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTCCG-GGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 90778999999999999873098985998789999999999986664999999997089987888999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~df~~~~~~a~~~IN~wv~~~T~g~I~~~~~~~~l~~~t 160 (381)
T d1by7a_ 81 NASTGNYLLESVNKLFGEKSASFREEYIRLCQKYYSSEPQAVDFLECAEEARKKINSWVKTQTKGKIPNLLPEGSVDGDT 160 (381)
T ss_dssp C------CEEEEEEEEEETTSCBCHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHTTTSCTTSSCTTSCCTTC
T ss_pred HCCCCCCEEEECCCHHCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 56798847866000000368732889999999861773020443212599999999999975247754567855679731
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~lvna~~fk~~W~~~F~~~~t~~~~F~~~~~~~~~V~mm~~~~~~~~~~~~~~~~~~v~lp~~~~~~m~iilp~~~~~ 240 (381)
T d1by7a_ 161 RMVLVNAVYFKGKWKTPFEKKLNGLYPFRVNSAQRTPVQMMYLREKLNIGYIEDLKAQILELPYAGDVSMFLLLPDEIAD 240 (381)
T ss_dssp CEEEEEEEEECCCBSSCCEECC---EEEEEETTEEEEECEEEEEEEEEEEEETTTTEEEEEEEETTTEEEEEEEESSCCS
T ss_pred HHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCC
T ss_conf 75611244774211578752356555333689805899516651555543136767499996147970799996277665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~v~lPkF~i~~~~dl~~~L~~lGi~~~F~~~~Adfs~is~~~~l~vs~i 320 (381)
T d1by7a_ 241 VSTGLELLESEITYDKLNKWTSKDKMAEDEVEVYIPQFKLEEHYELRSILRSMGMEDAFNKGRANFSGMSERNDLFLSEV 320 (381)
T ss_dssp SSSSCHHHHHHCCHHHHHHHTSTTTEEEEEEEEEEECEEEEEEEECHHHHHHTTCCGGGCTTTCCCTTTBSCSCCCCCEE
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEEEECCCEEEEEEECHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCEEEEE
T ss_conf 35666776642258899987512114340489965648997550569999856851120445454445678898157667
Q ss_pred ------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------9
Q 000711 482 ------------------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------------------s 482 (1338)
=
T Consensus 321 ~q~~~ieVdE~Gt~aaa~t~~~~~~~~~~~~~~f~~nrPF~f~I~d~~t~~iLF~G~v~~P 381 (381)
T d1by7a_ 321 FHQAMVDVNEEGTEAAAGTGGVMTGRTGHGGPQFVADHPFLFLIMHKITNCILFFGRFSSP 381 (381)
T ss_dssp EEEEEEEECSCBC-----------------CCEEECCSCEEEEEEETTTTEEEEEEEECCC
T ss_pred EEEEEEEECCCCCCCCCCCCEEEECCCCCCCCEEEECCCEEEEEEECCCCCEEEEEEECCC
T ss_conf 8889999878842023133200003568999879933998999999999978999994398
|
| >d1odza_ c.1.8.3 (A:) Mannanase A, ManA {Pseudomonas cellulosa (Cellvibrio japonicus) [TaxId: 155077]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Mannanase A, ManA species: Pseudomonas cellulosa (Cellvibrio japonicus) [TaxId: 155077]
Probab=100.00 E-value=0 Score=28703.81 Aligned_cols=1 Identities=0% Similarity=-1.423 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~p~~~~lvd~~At~~tk~L~~~L~~~~g~~il~Gqq~~~~~g~~~~~~~~~~sdv~~~tG~yPAv~G~D~~~~~~~~~~ 80 (381)
T d1odza_ 1 VKPVTVKLVDSQATMETRSLFAFMQEQRRHSIMFGHQHETTQGLTITRTDGTQSDTFNAVGDFAAVYGWDTLSIVAPKAE 80 (381)
T ss_dssp CCCEECCCSSTTCCHHHHHHHHHHHHHTTTCEEEEEETTTTCCSSCSCCSSSCCHHHHHHSSCCSEEEEEGGGTSTTCTT
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHCCCCCCCCH
T ss_conf 98877620597779999999999998648966983355444564436665306667640377744201200135687321
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~GgIvt~~WH~~~P~~~~~~~~~~~~~~~d~~~~v~~~lpg~~~~~~~~~~ld~ia~~~~~L~~~~~~ 160 (381)
T d1odza_ 81 GDIVAQVKKAYARGGIITVSSHFDNPKTDTQKGVWPVGTSWDQTPAVVDSLPGGAYNPVLNGYLDQVAEWANNLKDEQGR 160 (381)
T ss_dssp CCCHHHHHHHHHTTCEEEEECCCCCTTTGGGCSSTTTTSTTCCSCCSTTTSTTSTTHHHHHHHHHHHHHHHHTCBCTTSC
T ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 44999999999779959998730788987777641577643135667504899703699999999999999975540388
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~vPVl~Rp~hE~nG~WfwWg~~~~~p~~y~~lwr~~~~~l~~~~g~~Nliwv~sp~~~~~~~~~~~~~~YPGDdyVDivG 240 (381)
T d1odza_ 161 LIPVIFRLYHENTGSWFWWGDKQSTPEQYKQLFRYSVEYLRDVKGVRNFLYAYSPNNFWDVTEANYLERYPGDEWVDVLG 240 (381)
T ss_dssp BCCEEEECSCSTTSSSSTTSTTSSCHHHHHHHHHHHHHHHHTTSCCCSEEEEECCBCCSSCCHHHHHSSCCCTTTCSEEC
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 76289964210479865667889998999999999999998715986189986478787776444201089988677888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~D~Y~~~~~~~~~~~~~~~~l~~~~~~A~~~gKp~altE~G~~~~~~~~~~~~~~W~~~~l~~i~~~p~~~~i~y~~~W~ 320 (381)
T d1odza_ 241 FDTYGPVADNADWFRNVVANAALVARMAEARGKIPVISGIGIRAPDIEAGLYDNQWYRKLISGLKADPDAREIAFLLVWR 320 (381)
T ss_dssp CEEEECSSSCHHHHHHHHHHHHHHHHHHHHHTCEECBCEEEECHHHHHTTCCCTTHHHHHHHHHHHSTTGGGCSEEEECC
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEE
T ss_conf 63557888753589999999999999998559951663036667711026765426999999997282222443899985
Q ss_pred ------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------9
Q 000711 482 ------------------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------------------s 482 (1338)
.
T Consensus 321 N~~~~~~~~~~~~~~~~~~p~p~~~~~g~~~~~dF~~f~~~~~~lf~~dlp~ly~~p~~~~ 381 (381)
T d1odza_ 321 NAPQGVPGPNGTQVPHYWVPANRPENINNGTLEDFQAFYADEFTAFNRDIEQVYQRPTLIV 381 (381)
T ss_dssp CCTTCEEC--CCEECCCCSCCSSHHHHHTSHHHHHHHHHHSTTEECGGGCCSCSCCCEECC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHCHHHHHCCCCCC
T ss_conf 6766556666677763336777634457642899999976960113444807551677779
|
| >d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: MGS-like domain: Mannosylglycerate synthase, MGS species: Rhodothermus marinus [TaxId: 29549]
Probab=100.00 E-value=0 Score=28704.43 Aligned_cols=1 Identities=0% Similarity=0.437 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 slVVIP~~NEe~~il~~~v~~~a~~P~~~eIvVvDdsSdDtt~~i~~~~~~~~~~~~~~v~~~~~~~l~~~~~GKG~g~~ 80 (381)
T d2bo4a1 1 SLVVFPFKHEHPEVLLHNVRVAAAHPRVHEVLCIGYERDQTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKGDGMN 80 (381)
T ss_dssp CEEEEECCSSCHHHHHHHHHHHHHSTTCCEEEEEESSCCHHHHHHHHHHHHHHHHHSCCEEEEECCCCSSSSSSHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCHHHH
T ss_conf 98999727885889999999997589814999986999875999999852300113321001110023546578848899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~A~~~g~~~a~gd~lvflDADl~~~~pe~i~~L~~~i~~g~d~V~g~y~R~~~~grvt~~l~~pll~~l~~~~~~~~i~d 160 (381)
T d2bo4a1 81 TALRYFLEETQWERIHFYDADITSFGPDWITKAEEAADFGYGLVRHYFPRASTDAMITWMITRTGFALLWPHTELSWIEQ 160 (381)
T ss_dssp HHHHHHHHHCCCSEEEECCTTCSSCCHHHHHHHHHHHHTTCSEEEEECCCCTTSCHHHHHTHHHHHHHHCTTSSGGGCSC
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999997088888999758767677999999999876305758986314567882236755899999860201565054
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 Pl~G~~a~~R~~~~~L~~~~~v~~~~~~G~Di~lt~~A~~~G~rI~EV~i~~~~l~~~f~~v~~~~f~l~~~~~~~W~~~ 240 (381)
T d2bo4a1 161 PLGGELLMRREVAAMLYEDERVRRRSDWGIDTLYTFVTVQQGVSIYECYIPEGKAHRLYGGLDDLRTMLVECFAAIQSLQ 240 (381)
T ss_dssp TTCCCEEEEHHHHHHHHHCHHHHTCCSTTHHHHHHHHHHHTTCCEEEEECTTCCCCCCSCCGGGGHHHHHHHHHHHHHHT
T ss_pred CCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEC
T ss_conf 77610104099999862434556567866244999999985974784478778777899999999999999987782363
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~p~~~~g~~~~~~p~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (381)
T d2bo4a1 241 HEVVGQPAIHRQEHPHRVPVHIAERVGYDVEATLHRLMQHWTPRQVELLELFTTPVREGLRTCQRRPAFNFMDEMAWAAT 320 (381)
T ss_dssp TCCCCSCCCEEECCCCCCCHHHHTCCCSCHHHHHHHHTSSCCHHHHHHGGGSCHHHHHHHHHTTTSCCCTTCCHHHHHHH
T ss_pred CEECCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 33322012022557445888888752047999999999755777999998569988888987444664778767999999
Q ss_pred ------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------9
Q 000711 482 ------------------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (381)
T d2bo4a1 321 YHVLLEHFQPGDPDWEELLFKLWTTRVLNYTMTVALRGYDYAQQYLYRMLGRYRYQAALEN 381 (381)
T ss_dssp HHHHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999997301460688871056889999999999976079899999999877787876249
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=100.00 E-value=0 Score=28700.80 Aligned_cols=1 Identities=0% Similarity=-0.194 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~fp~l~~~~yld~~~~~~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a~ 80 (381)
T d1elua_ 1 QFPGLANKTYFNFGGQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGC 80 (381)
T ss_dssp CCGGGTTSEECCTTTCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHH
T ss_pred CCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHH
T ss_conf 99878988895697636899999999999999865278765315679999999999999998397945199978858986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~~~t~~v~i~~~~n~tG~ 160 (381)
T d1elua_ 81 DIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQ 160 (381)
T ss_dssp HHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTCC
T ss_pred HHCCHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 21000233247853899546541132011122334542222322233333205899998640233222123333456531
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~~~~~~~~~D~~~~s~~K~~~~p~G~g~l~~~~~~~~~~~p~~~~~~ 240 (381)
T d1elua_ 161 VLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWR 240 (381)
T ss_dssp BCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTGGGCCCCSCCTT
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 10035788987520345321022344334554442212222333333454422122305677741888986396100244
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 320 (381)
T d1elua_ 241 SITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQA 320 (381)
T ss_dssp TEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCC
T ss_conf 54433333443344432222333223204555433001588744421101456667899998875089769647887653
Q ss_pred ------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------9
Q 000711 482 ------------------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~vsf~~~~~~~~~~i~~~L~~~gi~v~~~~~~~~lRis~~~~nt~edid~ll~~l~e~~~ 381 (381)
T d1elua_ 321 GLVSFTVDSPLGHRAIVQKLEEQRIYLRTIADPDCIRACCHYITDEEEINHLLARLADFGP 381 (381)
T ss_dssp SEEEEEECSSSCHHHHHHHHHHTTEECEEETTTTEEEEECCTTCCHHHHHHHHHHHTTCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 1899983898899999999996896898668999799955788999999999999996691
|
| >d2guya2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus oryzae, Taka-amylase [TaxId: 5062]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Fungal alpha-amylases species: Aspergillus oryzae, Taka-amylase [TaxId: 5062]
Probab=100.00 E-value=0 Score=28700.73 Aligned_cols=1 Identities=0% Similarity=0.670 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~p~~W~~~~iY~i~~~~F~~~~~~~~~~~~~~~~~~~gGd~~gi~~~Ldyl~~LGv~~I~L~Pi~~~~~~~~~~~~~~~ 80 (381)
T d2guya2 1 ATPADWRSQSIYFLLTDRFARTDGSTTATCNTADQKYCGGTWQGIIDKLDYIQGMGFTAIWITPVTAQLPQTTAYGDAYH 80 (381)
T ss_dssp CCHHHHTTCCEEEECHHHHCBTTCCSSCCCCGGGTCCCCBCHHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCCTT
T ss_pred CCCCCCCCCEEEEEECCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCC
T ss_conf 99702147829999755211799988877787667647848999999699998779998996988778766688899998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 gY~~~d~~~vd~~~Gt~~dfk~lv~~~H~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (381)
T d2guya2 81 GYWQQDIYSLNENYGTADDLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFCFIQNYEDQTQ 160 (381)
T ss_dssp SCSEEEEEEECTTSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCEEBCGGGCCGGGSBSCCSGGGBCCSCBCCCTTCHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC
T ss_conf 75046646655677877899999989886063213100124666545765222334689875431001344445444554
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~~~w~~~~giDGfR~D~~~~~~~~f~~~~~~~~~~~~igE~~~~~~~~~~ 240 (381)
T d2guya2 161 VEDCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQKDFWPGYNKAAGVYCIGEVLDGDPAYTC 240 (381)
T ss_dssp HHHSBEECSSEEECBBCTTSHHHHHHHHHHHHHHHHHHTCCEEEETTGGGSCGGGHHHHHHHHTSEEEECCCCSCHHHHG
T ss_pred CCEEECCCCCCCCCHHCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHCCHHHHHHHHHCCEEEEEEECCCCCHHHHC
T ss_conf 32023257765510103355889999998765103113555103403754589999764321402563110364075540
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~enHD~~R~~s~~~~~~~~~~a~~~l~t 320 (381)
T d2guya2 241 PYQNVMDGVLNYPIYYPLLNAFKSTSGSMDDLYNMINTVKSDCPDSTLLGTFVENHDNPRFASYTNDIALAKNVAAFIIL 320 (381)
T ss_dssp GGGGTSSEEBCHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHSSCGGGSEECSCCTTSCCGGGTCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 23324444224066799999996267761778999998874067643000101676752210225889999999999998
Q ss_pred ------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------9
Q 000711 482 ------------------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------------------s 482 (1338)
.
T Consensus 321 ~pGiP~iy~G~E~g~~g~~~~~~r~~~~~~~~~~~~~l~~~i~~L~~lR~~~~~~~~~~~~ 381 (381)
T d2guya2 321 NDGIPIIYAGQEQHYAGGNDPANREATWLSGYPTDSELYKLIASANAIRNYAISKDTGFVT 381 (381)
T ss_dssp SSSEEEEETTGGGTCCCCSTTTTCCCGGGGTCCTTSHHHHHHHHHHHHHHHHHHHCTTTTT
T ss_pred CCCCCEEECCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 0897298736002757998811001466556767879999999999997488641699879
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=28700.00 Aligned_cols=1 Identities=0% Similarity=0.105 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~e~p~~~tedfgFk~l~~~~~~~~~~d~lP~~~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~ 80 (381)
T d1xipa_ 1 ASSLKDEVPTETSEDFGFKFLGQKQILPSFNEKLPFASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTF 80 (381)
T ss_dssp CCEECCCCCEEEESSCEEEEEEEEECSCCCTTCCCSSCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCC
T ss_pred CCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCEEEEEEHHHHHHHHHCCCCCCCC
T ss_conf 97546667816646530587166212789544589644426899577788999889977999989978786556788862
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~ip~v~~vafs~d~l~v~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~ 160 (381)
T d1xipa_ 81 KWEKEIPDVIFVCFHGDQVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQL 160 (381)
T ss_dssp SEEEECTTEEEEEEETTEEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EECCCCCCEEEEEEECCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEECCCCEEEEEECCCCEEEEEECCCCCCCC
T ss_conf 34168998689986189899995897899985100145446554556111021886069996589778999415864444
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy~~~~~~~ed~ 240 (381)
T d1xipa_ 161 AQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGNVISETDDE 240 (381)
T ss_dssp EESEEEEEECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECCCCSSCSS
T ss_pred CCCCCEEEECCCCEEEEEECCCEEEEEECCCCEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCC
T ss_conf 47752387338926999968968999818982036567788201578867786166899951756999987776666767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~ii~~~~~~~~f~~~~Di~~pfgs~~R~p~y~~~~l~~w~~~~~~l~iv~Ss~s~di~vl~~~~~~~~~~D~~ 320 (381)
T d1xipa_ 241 VSYDQKMYIIKHIDGSASFQETFDITPPFGQIVRFPYMYKVTLSGLIEPDANVNVLASSCSSEVSIWDSKQVIEPSQDSE 320 (381)
T ss_dssp CCCCEEEEEEEEETTEEEEEEESSSCCCCCCSCCCCCEEEEEEEEEEETTEEEEEEEETTCSBCEEECSSSEEEESSGGG
T ss_pred CCCCEEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEEEECCCCEEEECCCC
T ss_conf 76433799982699983035256566776566667517999830056567868999556763456861367489812675
Q ss_pred ------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------9
Q 000711 482 ------------------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------------------s 482 (1338)
=
T Consensus 321 Ra~lP~~~~~d~Dt~piGlalD~ss~~~v~~p~~g~~~~~plP~l~vL~~~G~L~~ww~~~ 381 (381)
T d1xipa_ 321 RAVLPISEETDKDTNPIGVAVDVVTSGTILEPCSGVDTIERLPLVYILNNEGSLQIVGLFH 381 (381)
T ss_dssp CCBCCBCTTTCCBCCEEEEEEECSCCC--------------CCEEEEEETTSEEEEEEEEC
T ss_pred CEEECCCCCCCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCCEEEEECCCCEEEEEEEEC
T ss_conf 3040357788876531589997124752315788822278998899996987899999879
|
| >d2aaaa2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus niger, acid amylase [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Fungal alpha-amylases species: Aspergillus niger, acid amylase [TaxId: 5061]
Probab=100.00 E-value=0 Score=28700.38 Aligned_cols=1 Identities=0% Similarity=-0.958 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~W~~~~iY~i~~~~F~~~~~~~~~~~~~~~~~~~gG~~~g~~~kLdyL~~LGv~~I~L~Pi~~~~~~~~~~~~~~~ 80 (381)
T d2aaaa2 1 LSAASWRTQSIYFLLTDRFGRTDNSTTATCNTGNEIYCGGSWQGIIDHLDYIEGMGFTAIWISPITEQLPQDTADGEAYH 80 (381)
T ss_dssp CCHHHHTTCCEEECCHHHHCCTTCCSCCCCCGGGCSCCCCCHHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCSTT
T ss_pred CCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCC
T ss_conf 98034488727999838106899998877777767758938999999799999769998994987668765788998875
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 gY~~~d~~~id~~~Gt~~~~k~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (381)
T d2aaaa2 81 GYWQQKIYDVNSNFGTADNLKSLSDALHARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSSYFHPYCLITDWDNLTM 160 (381)
T ss_dssp SCSEEEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEECCSBCCBSSCGGGCCGGGSBSCCSGGGBCCCCBCCCTTCHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 56646543311024988999999998866311110023445433456776555333587554345588766456445555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~pdln~~np~v~~~~~~~~~~~~~~~giDGfR~D~~~~~~~~f~~~~~~~~~~~~igE~~~~~~~~~~ 240 (381)
T d2aaaa2 161 VEDCWEGDTIVSLPDLDTTETAVRTIWYDWVADLVSNYSVDGLRIDSVLEVQPDFFPGYNKASGVYCVGEIDNGNPASDC 240 (381)
T ss_dssp HHHSBEECSSSEECBBCTTSHHHHHHHHHHHHHHHHHHTCCEEEESCSTTSCGGGHHHHHHHHTSEEEECCCCSCHHHHG
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHH
T ss_conf 67775678666675313233255667766644204221322000001233307899998744532233530379813321
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~nHD~~R~~~~~~~~~~~~~a~a~llt 320 (381)
T d2aaaa2 241 PYQKVLDGVLNYPIYWQLLYAFESSSGSISNLYNMIKSVASDCSDPTLLGNFIENHDNPRFAKYTSDYSQAKNVLSYIFL 320 (381)
T ss_dssp GGGGTSSEEBCHHHHHHHHHHHSSTTSCHHHHHHHHHHHHHHCSCGGGSEECSCCTTSCCGGGTCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 11344333002157899999985487307899999974331157721103435667721041246989999999999997
Q ss_pred ------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------9
Q 000711 482 ------------------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------------------s 482 (1338)
+
T Consensus 321 ~pG~P~iy~G~E~g~~g~~~p~~r~~~~~~~~~~~~~l~~~i~~L~~lRk~~~al~~~~~~ 381 (381)
T d2aaaa2 321 SDGIPIVYAGEEQHYAGGKVPYNREATWLSGYDTSAELYTWIATTNAIRKLAIAADSAYIT 381 (381)
T ss_dssp SSSEEEEETTTTTTCCCCTTTTTCCCGGGGTTCTTCHHHHHHHHHHHHHHHHHHHCTTTTT
T ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHCCCCCC
T ss_conf 0797675747214878998834111367677746769999999999997049453279879
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Probab=100.00 E-value=0 Score=28700.57 Aligned_cols=1 Identities=0% Similarity=-1.458 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~p~~p~~~~~~~~~~~~~~~~~~~~v~i~~rDG~~L~~~v~~P~~~~~~P~il~~~pYg~~~~~~~~~~~~~~~~~~~~ 80 (381)
T d1mpxa2 1 TSPMTPDITGKPFVAADASNDYIKREVMIPMRDGVKLHTVIVLPKGAKNAPIVLTRTPYDASGRTERLASPHMKDLLSAG 80 (381)
T ss_dssp CCTTSCSSCSSCCCCCCTTCSEEEEEEEEECTTSCEEEEEEEEETTCCSEEEEEEEESSCHHHHTCSSCCSSHHHHSCGG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 98989999998777776555866988999899998999999996899973089997567789765656665444320068
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~a~~Gy~vv~~d~RG~g~S~G~~~~~~~~~~~~~~~~~~~~~D~~~~i~w~~~~~~~~~~~vg~~G~SygG~~~~~~ 160 (381)
T d1mpxa2 81 DDVFVEGGYIRVFQDVRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESNGKVGMIGSSYEGFTVVMA 160 (381)
T ss_dssp GHHHHHTTCEEEEEECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEEEEEEEEEETHHHHHHHHH
T ss_pred HHHHHHCCCEEEEEECCCCCCCCCCEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHH
T ss_conf 99999689799998137657889853315201210132006789999999998753588576504560365778889888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 a~~~~~~l~a~v~~~~~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (381)
T d1mpxa2 161 LTNPHPALKVAVPESPMIDGWMGDDWFNYGAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLE 240 (381)
T ss_dssp HTSCCTTEEEEEEESCCCCTTTTSSSEETTEEBGGGHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGG
T ss_pred HHCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCC
T ss_conf 75356521043232454252010243468335322289998642110366112110135677787525654424023144
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~d~~w~~~s~~~~~~~~~i~vP~l~i~G~~d~~~~~~~~~~~~~~~~~~~~~~~~~LviGPw~H~~~ 320 (381)
T d1mpxa2 241 QLPWWHKLTEHAAYDAFWQEQALDKVMARTPLKVPTMWLQGLWDQEDMWGAIHSYAAMEPRDKRNTLNYLVMGPWRHSQV 320 (381)
T ss_dssp GSHHHHHHHHTCSSCHHHHTTCHHHHHHTSCCCSCEEEEEETTCSSCSSHHHHHHHHHGGGCTTSSSEEEEEESCCTTGG
T ss_pred CCHHHHHHHHCCCCCCHHHHCCCHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCC
T ss_conf 46177887527875301232690266652345674389842555775653899999999842666783699936767787
Q ss_pred ------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------9
Q 000711 482 ------------------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------------------s 482 (1338)
=
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~l~wFD~~LKg~~~~~~~ppV~~~~~G~~~Wr~~~~W 381 (381)
T d1mpxa2 321 NYDGSALGALNFEGDTARQFRHDVLRPFFDQYLVDGAPKADTPPVFIYNTGENHWDRLKAW 381 (381)
T ss_dssp GSCCSEETTEECSSCHHHHHHHHTHHHHHHHHHSTTCCCCCCCSEEEEETTTTEEEEESSS
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCC
T ss_conf 6677767766665101134689999999999727999999999889997899968407979
|
| >d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Xylanase inhibitor TAXI-I species: Wheat (Triticum aestivum) [TaxId: 4565]
Probab=100.00 E-value=0 Score=28701.08 Aligned_cols=1 Identities=0% Similarity=-2.154 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~pi~~~~~~~~Y~~~i~iGtpliiDTGSs~~Wvpc~~c~~~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~~~~~~~ 80 (381)
T d1t6ex_ 1 LPVLAPVTKDPATSLYTIPFHDGASLVLDVAGPLVWSTCDGGQPPAEIPCSSPTCLLANAYPAPGCPAPSCGSDKHDKPC 80 (381)
T ss_dssp CCEEEEEEECTTTCCEEEEEETTEEEEEETTCCCEEECCCTTCCCCCCBTTSHHHHHHHSSCCTTCCCCCC------CBC
T ss_pred CCEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98798112269988599999769866998998811460678877766562780264235757888887666678778888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~Y~~Gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dGi~Glg~~~~s~~~ql~~~~~~ 160 (381)
T d1t6ex_ 81 TAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKV 160 (381)
T ss_dssp EECCBCTTTCCBCCEEEEEEEEEEEEESSSSEEEEEEEEEEEEECCGGGGTTSCTTEEEEEECSSSTTSHHHHHHHHHTC
T ss_pred CEEEEEECCCCEEEEEEEEEEEEECCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHCCC
T ss_conf 60677838998888799999999653223552025885112202435665444667630210588873157887651376
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~fsl~l~~~~~~~~~~~~g~~~~~~~~g~~~~~pi~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~i~DTGtt~ 240 (381)
T d1t6ex_ 161 ANRFLLCLPTGGPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATGGVMLSTRLPY 240 (381)
T ss_dssp CSEEEEECCSSSCEEEEESCCSCSCHHHHTTCCEEECBCCTTCCSCEECEEEEEETTEECCCCTTCSCTTCEEECSSCSS
T ss_pred CEEEEEECCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEEECCEEECCCCCCCCCCCEEEECCCCE
T ss_conf 44899554777654237603656633357833777654157874257888778518846615755456763687427734
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~~f~~~~~~~i~~~~y~~~ 320 (381)
T d1t6ex_ 241 VLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKNSMVD 320 (381)
T ss_dssp EEECHHHHHHHHHHHHHHHHHC-------CCEECCCTTCSCEEEGGGCCEETTEECCCCEEEEETTSCEEEECHHHHEEE
T ss_pred EECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCEEEECHHHEEEE
T ss_conf 97778999999999988751445664211101466677522622565555565431461799975996799770473899
Q ss_pred ------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------9
Q 000711 482 ------------------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~Cl~i~~~~~~~~~~~~~~~~ILG~~flr~~y~vfD~~~~~IGfA~~~~~~~~~~~ 381 (381)
T d1t6ex_ 321 VKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSRLPHFTGCGGL 381 (381)
T ss_dssp EETTEEEESEEECCCCC------CSEEECHHHHTTEEEEEETTTTEEEEEECCTTCCSCC-
T ss_pred ECCCCEEEEEEECCCCCCCCCCCCCEEECHHHHCCEEEEEECCCCEEEEEECCCCCCCCCC
T ss_conf 0798489999832556677888973898979848689999899999999877888887688
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=0 Score=28633.82 Aligned_cols=1 Identities=0% Similarity=-0.526 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~t~~~h~~~~~dp~ga~~~PI~~sstf~~~~~~~~~~~~Y~R~~nPt~~~le~~la~LE~~~~a~~fsSGMaAisal 80 (380)
T d1ibja_ 1 ASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALSAV 80 (380)
T ss_dssp CCHHHHHTCCCCSSCTTCCSSCCCCCCSBCCCSSSSCCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHH
T ss_pred CCHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHH
T ss_conf 97767624279999999896188557766461887766895140898868999999999971986188603199999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 l~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~~~~~~~ai~~~t~li~~EtpsNP~l~v~Di~~i~~iA~ 160 (380)
T d1ibja_ 81 THLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAH 160 (380)
T ss_dssp HTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHH
T ss_pred HHHHCCCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 98627998799974033554012222110454212235751678877775067618996142443223445899999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~g~~~vVDnT~atP~~~~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rg 240 (380)
T d1ibja_ 161 AQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRG 240 (380)
T ss_dssp TTTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHH
T ss_pred HCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHC
T ss_conf 75980896243004300255455898999606520256667554433344126777787630466773787779999842
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 l~Tl~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~a~~~~~~~g~~~s~~~~~~~~a~~f~d~l~l~~~a~ 320 (380)
T d1ibja_ 241 IKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSIAV 320 (380)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCHHHHHHHHHHCSSSEECS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 31445538889888899999997389866996056456864211222456542111111127999999998389175741
Q ss_pred -----------------------------------------------------------C
Q ss_conf -----------------------------------------------------------9
Q 000711 482 -----------------------------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------------------------s 482 (1338)
.
T Consensus 321 SlG~~~SLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGlE~~eDLi~Dl~qAl~~l~~ 380 (380)
T d1ibja_ 321 SFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDIAFKTFPL 380 (380)
T ss_dssp CCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCSSCHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCHHHHHHCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 568766130485223012089999997697939599983409999999999999976689
|
| >d1vbga3 d.142.1.5 (A:3-382) Pyruvate phosphate dikinase, N-terminal domain {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Pyruvate phosphate dikinase, N-terminal domain domain: Pyruvate phosphate dikinase, N-terminal domain species: Maize (Zea mays) [TaxId: 4577]
Probab=100.00 E-value=0 Score=28631.67 Aligned_cols=1 Identities=0% Similarity=-0.227 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~f~~~~~~~~~~~~~lvGGK~AnLgel~~~G~pVP~GFvITt~Ay~~Fi~~n~~l~~~L~~~I~~~l~~~~~~~~ 80 (380)
T d1vbga3 1 KKRVFHFGKGKSEGNKTMKELLGGKGANLAEMASIGLSVPPGFTVSTEACQQYQDAGCALPAGLWAEIVDGLQWVEEYMG 80 (380)
T ss_dssp CCSEEEEETTEESSCTTCTTTTHHHHHHHHHHHHTTCCCCCEEEECHHHHHHHHHTTSCCCTTHHHHHHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 98899879986568814475072889989999978599999888549999999980764658799999999987787633
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~e~~a~~s~a~~~~~~~~~~~~~~~~~~~~~~~~ 160 (380)
T d1vbga3 81 ATLGDPQRPLLLSVRSGAAVSMPGMMDTVLNLGLNDEVAAGLAAKSGERFAYDSFRRFLDMFGNVVMDIPRSLFEEKLEH 160 (380)
T ss_dssp CBTTCSSSBCCEEEECCCSSCCTTCCCCEEEETCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHH
T ss_conf 22356421011001232034566767787751352488998863231101766555553101100034024567788888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~q~m~~~~~~gv~ft~~p~~~~~~~~~I~a~~Glg~~v 240 (380)
T d1vbga3 161 MKESKGLKNDTDLTASDLKELVGQYKEVYLSAKGEPFPSDPKKQLELAVLAVFNSWESPRAKKYRSINQITGLRGTAVNV 240 (380)
T ss_dssp HHHHHTCSSGGGCCHHHHHHHHHHHHHHHHHHHSSCCCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTCCCCCCCCEEE
T ss_pred HHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEEECCCCCCCCCCCCCEEECCCCCCCEEE
T ss_conf 88762304543136987566788998876650487422226888887654212102477100156502641330124245
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 v~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~La~l~~~iE~~yg~P 320 (380)
T d1vbga3 241 QCMVFGNMGNTSGTGVLFTRNPNTGEKKLYGEFLVNAQGEDVVAGIRTPEDLDAMKNLMPQAYDELVENCNILESHYKEM 320 (380)
T ss_dssp EECCCSCSSTTCEEEEEESSCTTTCCSSCEEEEEESSCHHHHHHTSCCCEETHHHHHHCHHHHHHHHHHHHHHHHHHCSC
T ss_pred EEEEECCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEECCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 56663388737667613443444675213322112555545300044366531022238899999999999999981985
Q ss_pred -----------------------------------------------------------C
Q ss_conf -----------------------------------------------------------9
Q 000711 482 -----------------------------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------------------------s 482 (1338)
-
T Consensus 321 qDIEWA~~dg~L~ILQaRPv~~~~~aa~~~~~d~~~~~~i~~~~~~~~~~p~~~~~~l~~ 380 (380)
T d1vbga3 321 QDIEFTVQENRLWMLQCRTGKRTGKSAVKIAVDMVNEGLVEPRSAIKMVEPGHLDQLLHP 380 (380)
T ss_dssp EEEEEEEETTEEEEEEEEECCCCHHHHHHHHHHHHHTTSSCHHHHGGGSCHHHHHHTTSC
T ss_pred CEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHCCC
T ss_conf 105999989989999744787557879999999988599688999873898577461399
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=0 Score=28630.55 Aligned_cols=1 Identities=100% Similarity=0.072 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~G 80 (380)
T d2gmha1 1 CKVPRITTHYTIYPRDQDKRWEGVNMERFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSG 80 (380)
T ss_dssp CCSCCCCCCTTTSCTTSCGGGSSCCCCCCEEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
T ss_conf 98885335642245335754444574201363888998977899999999985213413999799981788899874535
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 gvl~~~~l~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ae~~g~~~~~ 160 (380)
T d2gmha1 81 ACLDPRAFEELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYP 160 (380)
T ss_dssp CEECTHHHHHHCTTHHHHTCCCCEECCEEEEEEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEET
T ss_pred CCCCHHHHHHHCCCHHHHCCCCCCCEECCEEEEEECCCCCCCCCCCCHHCCCCCCEEEHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 16668899987630344355301320012279963366466545670110245551320467888999987631543443
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~~G~l~k~li~~~~l~~~~~~~~G~~sip 240 (380)
T d2gmha1 161 GYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQGGFQSIP 240 (380)
T ss_dssp TCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHHHHTTTTTTSCCCCGGGGCC
T ss_pred ECCEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 01001344225773110122332323334556555643003463799956178866288876542103665545666665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~l~~~G~lLVGDAAG~vnP~~g~GI~~Am~SG~lAAeai~~al~~~~~~~~~~~~~~~~y~~~~~~s~~~~eL~~~rn~~ 320 (380)
T d2gmha1 241 KLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIFNQLTSENLQSKTIGLHVTEYEDNLKNSWVWKELYSVRNIR 320 (380)
T ss_dssp CCEETTEEECTTTTCCCBTTTTBCHHHHHHHHHHHHHHHHHHHTCCCCCCSSSSCCCTHHHHHHHTSHHHHHHHHTTTTT
T ss_pred CCCCCCEEEEECCCCCCCHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 34069806873354313512148753220237889999999997188643103444556889987628999999863877
Q ss_pred -----------------------------------------------------------C
Q ss_conf -----------------------------------------------------------9
Q 000711 482 -----------------------------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------------------------s 482 (1338)
+
T Consensus 321 ~~~~~~~g~~~g~~~~~~~~~~~~g~~p~tl~~~~~d~~~l~~~~~~~~i~y~~~d~~~~ 380 (380)
T d2gmha1 321 PSCHGILGVYGGMIYTGIFYWIFRGMEPWTLKHKGSDSDQLKPAKDCTPIEYPKPDGQIS 380 (380)
T ss_dssp GGGGSTTTHHHHHHHHHHHTTTTTTCCSCCCCCCSCGGGCCCCGGGSCCCCCCCCCSSSS
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 898752108999999999999857898701789997889988798589998999989169
|
| >d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]
Probab=100.00 E-value=0 Score=28629.08 Aligned_cols=1 Identities=0% Similarity=0.271 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~LF~P~~ig~~~lkNRiv~~pm~~~~~~~G~p~~~~~~~y~~rA~Ggglii~~~~~V~~~~~~~~~~~~~~~d~~i~ 80 (380)
T d1q45a_ 1 SNETLFSSYKMGRFDLSHRVVLAPMTRCRALNGVPNAALAEYYAQRTTPGGFLISEGTMVSPGSAGFPHVPGIYSDEQVE 80 (380)
T ss_dssp CCCCTTSCEEETTEEESCSEEECCCCCCCSGGGCCCHHHHHHHHHTCCTTCEEEEEEEESSTTCCCSTTCCBCSSHHHHH
T ss_pred CCCCCCCCCCCCCEEECCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCEEECCCCCCCCCCCCCCCHHHHH
T ss_conf 98635898118999856875884438883889979999999999998497799974508877757899986217779988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~k~l~~~vh~~g~~~~~QL~H~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~ 160 (380)
T d1q45a_ 81 AWKQVVEAVHAKGGFIFCQLWHVGRASHAVYQPNGGSPISSTNKPISENRWRVLLPDGSHVKYPKPRALEASEIPRVVED 160 (380)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECCTTSCCGGGSGGGCCCEESSSCCCCTTTCCEECTTSCEECCCCCEECCGGGHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEECCHHHHHHHHHH
T ss_conf 99999999873576258875307866665545567787666557666677224267755568998843787889999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 f~~aA~~A~~aGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~lEii~aIr~~vg~~~~~~~~~~~~d~~~ 240 (380)
T d1q45a_ 161 YCLSALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDQYGGSIANRCRFLKQVVEGVVSAIGASKVGVRVSPAIDHLD 240 (380)
T ss_dssp HHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCGGG
T ss_pred HHHHHHHHHHHCCCEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
T ss_conf 99999999982865366000211367654165335576655764231036677779988887015672278752022366
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~Gg~~~~~ 320 (380)
T d1q45a_ 241 ATDSDPLSLGLAVVGMLNKLQGVNGSKLAYLHVTQPRYHAYGQTESGRQGSDEEEAKLMKSLRMAYNGTFMSSGGFNKEL 320 (380)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHTTSSCCSEEEEECCC---------------CHHHHHHHHHHHHSCSCEEEESSCCHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCHHH
T ss_conf 42133123333210256676653135632477416754433334566567625667889988652488589679989999
Q ss_pred -----------------------------------------------------------C
Q ss_conf -----------------------------------------------------------9
Q 000711 482 -----------------------------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------------------------s 482 (1338)
-
T Consensus 321 ae~~l~~G~~DlV~~gR~liaDPdlv~K~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (380)
T d1q45a_ 321 GMQAVQQGDADLVSYGRLFIANPDLVSRFKIDGELNKYNRKTFYTQDPVVGYTDYPFLAP 380 (380)
T ss_dssp HHHHHHTTSCSEEEESHHHHHCTTHHHHHHTTCCCCCCCGGGSSCCCSSTTTTCSCCCCC
T ss_pred HHHHHHCCCCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 999998699632455299887924999996299988887466458999898577789897
|
| >d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Hypothetical protein MW1667 (SA1546) domain: Hypothetical protein MW1667 (SA1546) species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=28627.22 Aligned_cols=1 Identities=0% Similarity=-1.225 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~i~fd~dGVll~~~~~~D~s~ltv~~ll~s~e~Lg~~~~i~~~k~~~~t~~~i~~~~~~~~~il~~~k~~g~n~~~dl 80 (380)
T d1qyia_ 1 MKKILFDVDGVFLSEERCFDVSALTVYELLMDKCYLGLHSHIDWETLTDNDIQDIRNRIFQKDKILNKLKSLGLNSNWDM 80 (380)
T ss_dssp CCEEEECSBTTTBCSHHHHHHHHHHHHHHHHCTTTTCCSCCCCGGGCCHHHHHHHHHHHHTTTHHHHHHHHTTCCCHHHH
T ss_pred CCEEEEECCCEEECCEEECCHHHHHHHHHHHCHHHCCCCEEEECCCCCCHHHHHHEEEEECCHHHHHHHHHCCCCHHHHH
T ss_conf 96699937807982433203676658887612011256404533765510043311133053246676662688806999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~k~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (380)
T d1qyia_ 81 LFIVFSIHLIDILKKLSHDEIEAFMYQDEPVELKLQNISTNLADCFNLNEQLPLQFLDNVKVGKNNIYAALEEFATTELH 160 (380)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHCSSCHHHHHTTSGGGCSSCCCCCTTTTHHHHTTCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHCCHHHCC
T ss_conf 99999999998774348985778987775436408999875365556775148888765324553144755521376528
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~a~~~~r~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~~i~p~~~v~~~l~~lk~aGi~v~i~Tg~ 240 (380)
T d1qyia_ 161 VSDATLFSLKGALWTLAQEVYQEWYLGSKLYEDVEKKIARTTFKTGYIYQEIILRPVDEVKVLLNDLKGAGFELGIATGR 240 (380)
T ss_dssp CSCCGGGSTTCHHHHHHHHHHHHHHHHHHHHHHHHCSCCSCSSCCCTTTTCCBSSCHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 75888999986899999999999877220223345533156675423013565334363999999999879959998899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~a~~il~~lgl~~~F~~~~i~~~~d~~~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~k~~iv~~~~~~~~~~~~ 320 (380)
T d1qyia_ 241 PYTETVVPFENLGLLPYFEADFIATASDVLEAENMYPQARPLGKPNPFSYIAALYGNNRDKYESYINKQDNIVNKDDVFI 320 (380)
T ss_dssp CHHHHHHHHHHHTCGGGSCGGGEECHHHHHHHHHHSTTSCCCCTTSTHHHHHHHHCCCGGGHHHHHHCCTTCSCTTTEEE
T ss_pred CHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 79999999998199534785058744133311220331102369986999999998088778899999973899886999
Q ss_pred -----------------------------------------------------------C
Q ss_conf -----------------------------------------------------------9
Q 000711 482 -----------------------------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------------------------s 482 (1338)
-
T Consensus 321 vGD~~~D~~aak~Ag~~~Igv~~G~~g~~~~~el~~~~AD~ii~~~~el~~il~~l~~~~ 380 (380)
T d1qyia_ 321 VGDSLADLLSAQKIGATFIGTLTGLKGKDAAGELEAHHADYVINHLGELRGVLDNLLEHH 380 (380)
T ss_dssp EESSHHHHHHHHHHTCEEEEESCBTTBGGGHHHHHHTTCSEEESSGGGHHHHHSCTTTTC
T ss_pred ECCCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCCCEEECCHHHHHHHHHHHHHCC
T ss_conf 889989999999879988999458888643778976799999889999999999998509
|
| >d1edga_ c.1.8.3 (A:) Endoglucanase CelA {Clostridium cellulolyticum [TaxId: 1521]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endoglucanase CelA species: Clostridium cellulolyticum [TaxId: 1521]
Probab=100.00 E-value=0 Score=28626.14 Aligned_cols=1 Identities=0% Similarity=-0.859 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~g~nlgn~lda~~~~~~~~~~~~e~~Wgnp~~t~~~i~~ik~~Gfn~vRi 80 (380)
T d1edga_ 1 MYDASLIPNLQIPQKNIPNNDGMNFVKGLRLGWNLGNTFDAFNGTNITNELDYETSWSGIKTTKQMIDAIKQKGFNTVRI 80 (380)
T ss_dssp CCCGGGSCCCCCCCCCCCCSHHHHHHHHHCSEEECTTSTTCCCCSSCCSGGGHHHHTTCSCCCHHHHHHHHHHTCCEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEE
T ss_conf 95434576564465566888789999864784623867036887656678987776699616699999999869987997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 Pv~w~~~~~~~~~~i~~~~l~~v~~vV~~a~~~Gl~VIldlHh~~~~~~~~~~~~~~~~~~~~~~~~~W~qiA~~fkd~~ 160 (380)
T d1edga_ 81 PVSWHPHVSGSDYKISDVWMNRVQEVVNYCIDNKMYVILNTHHDVDKVKGYFPSSQYMASSKKYITSVWAQIAARFANYD 160 (380)
T ss_dssp CCCCGGGEETTTTEECHHHHHHHHHHHHHHHTTTCEEEEECCSCBCTTTSBCSSGGGHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 34078826899885298999999999999997699799845667887766678656757799999999999887606898
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~l~fel~NEP~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~IR~~~~~n~~r~i~v~g~~~~~~~~~~~~~~~p~ 240 (380)
T d1edga_ 161 EHLIFEGMNEPRLVGHANEWWPELTNSDVVDSINCINQLNQDFVNTVRATGGKNASRYLMCPGYVASPDGATNDYFRMPN 240 (380)
T ss_dssp TTEEEECCSSCCCTTSTTTTSCCTTCHHHHHHHHHHHHHHHHHHHHHHHTCGGGGTSCEEEECGGGCHHHHHSTTCCCCC
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHCCCC
T ss_conf 66999621344446786544532223108999999999999999999984457886089857886477543000111554
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 d~~~~~~~li~s~H~Y~p~~f~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~giPviiGEfG~~~~~~~~~r~ 320 (380)
T d1edga_ 241 DISGNNNKIIVSVHAYCPWNFAGLAMADGGTNAWNINDSKDQSEVTWFMDNIYNKYTSRGIPVIIGECGAVDKNNLKTRV 320 (380)
T ss_dssp CCTTCCSCEEEEEECCCSHHHHTSCGGGTCCCCCCTTCHHHHHHHHHHHHHHHHHTGGGTCCEEEEEECCCCSSCHHHHH
T ss_pred CCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHH
T ss_conf 45677887799975157643566667767877655576113899999999999988754962999623376789858999
Q ss_pred -----------------------------------------------------------C
Q ss_conf -----------------------------------------------------------9
Q 000711 482 -----------------------------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~~~~a~~~gi~~~~Wdn~~~~~~~~~fg~~dr~~~~w~~p~~~~~~~~~~~g~~~ 380 (380)
T d1edga_ 321 EYMSYYVAQAKARGILCILWDNNNFSGTGELFGFFDRRSCQFKFPEIIDGMVKYAFGLIN 380 (380)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCCCCSSSSCCCCCEETTTTEESSHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 999999999998699279987998888866745153788865889999999998648999
|
| >d1elja_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: D-maltodextrin-binding protein, MBP species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=0 Score=28623.85 Aligned_cols=1 Identities=0% Similarity=-1.092 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~k~~eg~i~~W~~~~~~~~~~~~~~~~~F~~~~p~I~v~~~~~~~~~~~l~~~~~~g~~pDi~~~~~~~~~~~~~~g~l~ 80 (380)
T d1elja_ 1 MKIEEGKVVIWHAMQPNELEVFQSLAEEYMALCPEVEIVFEQKPNLEDALKAAIPTGQGPDLFIWAHDWIGKFAEAGLLE 80 (380)
T ss_dssp CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCTTEEEEEEECTTHHHHHHHHTTTTCSCSEEEEEGGGHHHHHHTTCBC
T ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCC
T ss_conf 98766389999589803899999999999987839799998689999999999976999819999937799999879963
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~dG~~y~~P~~~~~~~l~ynkd~~~~~P~T~~e~~~~~~~l~~~~~~~~~~~~~~~~ 160 (380)
T d1elja_ 81 PIDEYVTEDLLNEFAPMAQDAMQYKGHYYALPFAAETVAIIYNKEMVSEPPKTFDEMKAIMEKYYDPANEKYGIAWPINA 160 (380)
T ss_dssp CCTTTCCHHHHTTBCHHHHHHTEETTEECEEEEEEEECEEEEETTTCSSCCSSHHHHHHHHHHHCBGGGTBCSCBCCCSH
T ss_pred CCCHHHHHCCCCCCCHHHHHHEEECCEECCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 08665400221112166664103454301122222103566666676421332899999999986044771454311454
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~ 240 (380)
T d1elja_ 161 YFISAIAQAFGGYYFDDKTEQPGLDKPETIEGFKFFFTEIWPYMAPTGDYNTQQSIFLEGRAPMMVNGPWSINDVKKAGI 240 (380)
T ss_dssp HHHHHHHTTTSCCSEETTTTEECTTSHHHHHHHHHHHHHTGGGSCSCCCHHHHHHHHHTTSSSEEEECGGGHHHHHHTTC
T ss_pred CCCCHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEECCHHHHHHHHHHHC
T ss_conf 32201120478500033454467798899999999987443233545750465666405761155244288999875430
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~s~~~e~A~~fi~~l~s~e~~~~~~~~~~g~~P~~~~~~~~~~~~~~~ 320 (380)
T d1elja_ 241 NFGVVPLPPIIKDGKEYWPRPYGGVKLIYFAAGIKNKDAAWKFAKWLTTSEESIKTLALELGYIPVLTKVLDDPEIKNDP 320 (380)
T ss_dssp CEEEECCCCEEETTEEECCCCEEEEEEEEEBTTCSCHHHHHHHHHHHHHCHHHHHHHHHHHCCBCCBGGGGGCHHHHTCH
T ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCHHHHCCH
T ss_conf 26644458878776666652211000011244674599999999986326999999998348888777788598755193
Q ss_pred -----------------------------------------------------------C
Q ss_conf -----------------------------------------------------------9
Q 000711 482 -----------------------------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------------------------s 482 (1338)
=
T Consensus 321 ~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~g~~~~d~~~al~~~~~~i~~~~k 380 (380)
T d1elja_ 321 VIYGFGQAVQHAYLMPKSPKMSAVWGGVDGAINEILQDPQNADIEGILKKYQQEILNNMQ 380 (380)
T ss_dssp HHHHHHHHHHTCEECCCCTTHHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 899999999518207889878999999999999997789992099999999999999529
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=100.00 E-value=0 Score=28551.56 Aligned_cols=1 Identities=0% Similarity=-0.660 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 md~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (379)
T d2f5va1 1 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQLMSVSVPVNTLV 80 (379)
T ss_dssp CCSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSSTTCCTTCSHHHHHCGGGHHHHHHHTCEESCCCCCCCC
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99732589989688999999999658893999936899987522346222023346664445434566333566554555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~r~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 160 (379)
T d2f5va1 81 VDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMSTHWTCATPRFDREQRPLLVKDDADADDAEWDRLYTKA 160 (379)
T ss_dssp CCCSCTTSCCCSSCCCCTTCCTTCCTTSCCTTCEECCSTTGGGGTCCCBCCCCCGGGSCCSSSSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCEEECCCCCCHHHHHHCCCCCHHHHCCCCCCCCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCCHHHH
T ss_conf 66777777667876761688821214442454122303799846216683458988863012457776688686025564
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~ 240 (379)
T d2f5va1 161 ESYFQTGTDQFKESIRHNLVLNKLAEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQNRPNTDAPEERFNLFPAVA 240 (379)
T ss_dssp HHHHTEESCTTTTCHHHHHHHHHHHHHTTTSSCCEECCEEEEEEETTEEEECCHHHHCCCCCEEETTEEEEEEEEECSEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHCCHHHHCCCCCEEECCCE
T ss_conf 44454899999877775277877553445656765444210047888788589886343310433776489999956999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 V~~i~~~~~~~r~~gV~~~d~~~g~~~~i~a~~vilaaGa~~tp~lL~~Sg~~~~~~~~~~~~~~~~~~~g~h~mG~~~~ 320 (379)
T d2f5va1 241 CERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPTNPPELLPSLGSHRMGFDEK 320 (379)
T ss_dssp EEEEEECTTSSCEEEEEEEETTTCCEEEEEEEEEEECSCHHHHHHHHHHTTSSCCSSCCTTSCCSSSTTTTBTCBCSCTT
T ss_pred EEEEEEECCCCEEEEEEEEECCCCEEEEEECEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
T ss_conf 99999818999899999997999979999650899655766898997322002223345566753166545044566888
Q ss_pred ----------------------------------------------------------C
Q ss_conf ----------------------------------------------------------9
Q 000711 482 ----------------------------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------------------------s 482 (1338)
.
T Consensus 321 ~~~~vvd~~~~v~g~~nlyv~d~sv~p~~~~~nPt~t~~alA~r~a~~i~~~~~~~~~~ 379 (379)
T d2f5va1 321 EDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCEYIKQNFTPSPFT 379 (379)
T ss_dssp TTTCSBCTTCBBTTCSSEEECSGGGCCSCCCSCSHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 88724788975213289797388556775656818889999999999999862458999
|
| >d1lj5a_ e.1.1.1 (A:) Plasminogen activator inhibitor-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Serpins superfamily: Serpins family: Serpins domain: Plasminogen activator inhibitor-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28550.77 Aligned_cols=1 Identities=0% Similarity=-0.958 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~~~~~~F~~~l~~~l~~~~~~~N~v~SP~si~~~La~l~~Ga~g~T~~el~~~L~~~~~~~~~~~~~~~~~~ 80 (379)
T d1lj5a_ 1 VHHPPSYVAHLASDFGVRVFQQVAQASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKIDDKGMAPALRHLYK 80 (379)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHSTTBCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHTSCTTSTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 98976888888849999999998723969869987899999999999867728999999970999873778999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~l~~~~~~~~l~~an~l~v~~~~~~~~~f~~~~~~~y~~~~~~vdF~~~~~a~~~IN~wv~~~T~g~I~~~~~~~~l~~~ 160 (379)
T d1lj5a_ 81 ELMGPWNKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSEVERARFIINDWVKTHTKGMISNLLGKGAVDQL 160 (379)
T ss_dssp HHHCGGGSSEEEEEEEEEEETTSCCCTTHHHHHHHHHSCCCEEECTTSHHHHHHHHHHHHHHTTTTSCCCSSCTTSSCTT
T ss_pred HHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 86175554520024478773567245788998787636600135555268999999999996049932331376678965
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 t~~~lvna~~f~~~W~~~F~~~~t~~~~F~~~~~~~~~V~~M~~~~~~~~~~~~~~~~~~~~vv~Lp~~~~~~sm~iilP 240 (379)
T d1lj5a_ 161 TRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAAP 240 (379)
T ss_dssp CCEEEEEEEEEEEEBSSCCCCCTTCEEEEECTTSCEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEBTTSSEEEEEEEE
T ss_pred CEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEECC
T ss_conf 40466721799511347677355533210346785576112354151205885036666058999603798478999647
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~v~l~lPkf~i~~~~dl~~~L~~lGl~~~F~~~~adfs~is~~~~l~vs~v 320 (379)
T d1lj5a_ 241 YEKEVPLSALTNILSAQLISHWKGNMTRLPRLLVLPKFSLETEVDLRKPLENLGMTDMFRQFQADFTSLSDQEPLHVAQA 320 (379)
T ss_dssp SSTTSCTHHHHTTCCHHHHHHHHHHCEEEEEEEEEECEEEEEEEECHHHHHHTTCCGGGCTTTCCCTTTCSSSCCCEEEE
T ss_pred CCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCEEEEEEEEEEEEECHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 76666367776530077788777634313308999999984100277878867972235765565223678898077656
Q ss_pred ----------------------------------------------------------C
Q ss_conf ----------------------------------------------------------9
Q 000711 482 ----------------------------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------------------------s 482 (1338)
=
T Consensus 321 ~hk~~iev~E~G~~a~a~t~~~~~~~~~~~~f~~drPF~f~I~~~~t~~~lf~G~v~~P 379 (379)
T d1lj5a_ 321 LQKVKIEVNESGTVASSSTAVIVSARMAPEEIIMDRPFLFVVRHNPTGTVLFMGQVMEP 379 (379)
T ss_dssp EEEEEEEECSSEEEEEEEEEEEESSCCCCCCCCBCCEEEEEEEETTTTEEEEEEEEECC
T ss_pred EEEEEEEECCCCEEECCCCEEEECCCCCCCEEEEECCEEEEEEECCCCCEEEEEEECCC
T ss_conf 88999998787145022322542268999879940998999999999968999995398
|
| >d3sila_ b.68.1.1 (A:) Salmonella sialidase {Salmonella typhimurium, strain lt2 [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Salmonella sialidase species: Salmonella typhimurium, strain lt2 [TaxId: 90371]
Probab=100.00 E-value=0 Score=28548.30 Aligned_cols=1 Identities=0% Similarity=0.038 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~yRiP~L~~~~~G~llA~~e~R~~~~~d~~~~div~~rS~DgGkTWs~~ 80 (379)
T d3sila_ 1 EKSVVFKAEGEHFTDQKGNTIVGSGSGGTTKYFRIPAMCTTSKGTIVVFADARHNTASDQSFIDTAAARSTDGGKTWNKK 80 (379)
T ss_dssp CEEEEECTTCCCCBCTTSCBCCCSBGGGBCCEEEEEEEEECTTCCEEEEEEEESSCSCSSSCEEEEEEEESSSSSCCEEE
T ss_pred CCCEEEEECCCCCCCCCCCEEEECCCCCCEEEEECCEEEEECCCCEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCC
T ss_conf 94089984775715889858996479986255746689997999599999667789887777519999913796589999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~i~~~~~~~~~~~~~~p~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~g~tw~~p~~~~~~ 160 (379)
T d3sila_ 81 IAIYNDRVNSKLSRVMDPTCIVANIQGRETILVMVGKWNNNDKTWGAYRDKAPDTDWDLVLYKSTDDGVTFSKVETNIHD 160 (379)
T ss_dssp EEECCCCSCTTTCEEEEEEEEEEEETTEEEEEEEEEEESSCCSCGGGCCSSSSCTTCEEEEEEESSTTSCCEEECCSHHH
T ss_pred EECCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 88647998765243477647887899978999999735788875430135678774247887658610001467425321
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~g~g~gi~~~~g~l~~p~~~~~~~~~~~~~~~~~~~sddgg~w~~~~~~~~~~~~E~~vve~dG~ll~ 240 (379)
T d3sila_ 161 IVTKNGTISAMLGGVGSGLQLNDGKLVFPVQMVRTKNITTVLNTSFIYSTDGITWSLPSGYCEGFGSENNIIEFNASLVN 240 (379)
T ss_dssp HHHHHCSEEEEEECSEECEECTTSCEEEEEEEEECTTSSCSEEEEEEEESSSSSEECCSCCEECTTCCEEEEEETTEEEE
T ss_pred CCCCCCCEEEECCCCCCEEEECCCCEEEEEEEEECCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCCCEEEECCCCEEE
T ss_conf 12236530455057662476046534645898815899862799999857887533540356778877889864885799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~R~~g~~~v~~S~DgG~TWse~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~~~~~r~~~~~~~s~d~g~tW~~~ 320 (379)
T d3sila_ 241 NIRNSGLRRSFETKDFGKTWTEFPPMDKKVDNRNHGVQGSTITIPSGNKLVAAHSSAQNKNNDYTRSDISLYAHNLYSGE 320 (379)
T ss_dssp EECCSSBCBCEEESSSSSCCEECTTTTTCSBCCTTCCCCEEEEEEETTEEEEEEEEECCTTSSTTCCCEEEEEECTTTCC
T ss_pred EEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCC
T ss_conf 98717966999986898623145665323221224321226883469919999889888888635899974688867788
Q ss_pred ----------------------------------------------------------C
Q ss_conf ----------------------------------------------------------9
Q 000711 482 ----------------------------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~~~~~~~~~~~~aYS~l~~~~~~~~~~l~~lyE~~~~i~~~~lt~~l~~~~~~~ 379 (379)
T d3sila_ 321 VKLIDDFYPKVGNASGAGYSCLSYRKNVDKETLYVVYEANGSIEFQDLSRHLPVIKSYN 379 (379)
T ss_dssp EEEEEEEECSCCCTTSCCCEEEEEEEETTEEEEEEEEEETTEEEEEECGGGHHHHHTCC
T ss_pred CEEEECCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEECCCCEEEHHHHHHHHHHCCCC
T ss_conf 67995147501589970312248747989999999998999878369776477733479
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=100.00 E-value=0 Score=28475.99 Aligned_cols=1 Identities=100% Similarity=1.268 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
|
T Consensus 1 ~~~~~~~~~~~~~LtfdDVllvP~~st~~sr~V~l~t~lt~~~~l~iPIIsApMdtVt~~~mA~als~~GGLGvLhr~~~ 80 (378)
T d1jr1a1 1 GLTAQQLFNCGDGLTYNDFLILPGYIDFTADQVDLTSALTKKITLKTPLVSSPMDTVTEAGMAIAMALTGGIGFIHHNCT 80 (378)
T ss_dssp CBCHHHHTSSCCCCCGGGEEECCCCCCSCGGGCBCCEESSSSCEESSCEEECCCTTTCSHHHHHHHHHHTCEEEECCSSC
T ss_pred CCCHHHHHCCCCCCCCCCEEEECCCCCCCHHHCEEEEEEECCCCCCCCEEECCCCCCCCHHHHHHHHHCCCEEEECCCCC
T ss_conf 98978862568888844679847988776777562069887856899879799987388999999997899469769999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~e~~~~ev~~v~~~~~~p~~~~~~~~~l~v~aavg~~~~~~~~~~~l~~agv~vi~id~a~g~~~~~~~~i~~ik~~~~~ 160 (378)
T d1jr1a1 81 PEFQANEVRKVKKYEQYPLASKDAKKQLLCGAAIGTHEDDKYRLDLLALAGVDVVVLDSSQGNSIFQINMIKYMKEKYPN 160 (378)
T ss_dssp HHHHHHHHHHHHTSCCCTTCCBCTTSCBCCEEEECSSTHHHHHHHHHHHHTCCEEEECCSSCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHEEHHHHHCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999887641104327643335546789999956687789999999751555576403676202357999999987899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~iIaGnVaT~e~a~~L~~aGAD~VkVGiG~Gs~ctTr~~tGvG~pq~sai~~~~~~a~~~~vpIIADGGi~~~gdiakA 240 (378)
T d1jr1a1 161 LQVIGGNVVTAAQAKNLIDAGVDALRVGMGCGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQNVGHIAKA 240 (378)
T ss_dssp CEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHH
T ss_pred CCEEECCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCEEEE
T ss_conf 72530220129999999982999786033135444454222347665202567887511569853425333547732468
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 la~GAd~VMmGs~fAgt~EspG~~~~~~g~~~k~~~gm~S~~a~~~~~~~~~~~~~~~~~~~~~eG~~~~v~~~G~v~~~ 320 (378)
T d1jr1a1 241 LALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKHLSSQNRYFSEADKIKVAQGVSGAVQDKGSIHKF 320 (378)
T ss_dssp HHTTCSEEEESTTTTTBTTSSSCCEESSSCEEEEEECTTSTTTC----------------CCCCCBCEEEEECCBCHHHH
T ss_pred EEEECCEEEECCEEEEEECCCCCCCEECCCEEEECCCCCHHHHHHCCCCHHHHHCCCCCCCCCCCCCEEEECCCCCHHHH
T ss_conf 88605435532321342004675231468332312431045554401320332103345644787317850368778999
Q ss_pred ---------------------------------------------------------C
Q ss_conf ---------------------------------------------------------9
Q 000711 482 ---------------------------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~l~gglrs~m~y~G~~~l~e~~~~~~~~~~~f~~~t~~~~~e~~~h~~~~~~~~~~ 378 (378)
T d1jr1a1 321 VPYLIAGIQHSCQDIGAKSLTQVRAMMYSGELKFEKRTSSAQVEGGVHSLHSYEKRLF 378 (378)
T ss_dssp HHHHHHHHHHHHHHTTCSBHHHHHHHHHHSCSCEEECCHHHHHHHSCCSCSCCCCCCC
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEECHHHHHCCCCCCCCCCCCCCC
T ss_conf 9999999888652657573999975333577269998845301257875541012339
|
| >d1xqga_ e.1.1.1 (A:) Maspin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Serpins superfamily: Serpins family: Serpins domain: Maspin species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28472.77 Aligned_cols=1 Identities=0% Similarity=-0.194 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~l~~a~~~Fa~~L~~~l~~~~~~~N~v~SP~si~~~L~~l~~Ga~g~T~~el~~~L~~~~~~~~~~~~~~~~~~~ 80 (378)
T d1xqga_ 1 QGSMDALQLANSAFAVDLFKQLSEKEPLGNVLFSPIALSTSLSLAQVGAKGDTANEIGQVLHFENVKDVPFGFQTVTSDV 80 (378)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHSTTSCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHTTGGGCSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 97678999999999999999987229798499888999999999998677589999999708998689999999999997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~l~~~~~l~~~~~~~~~~~f~~~~~~~y~~~v~~~dF~~~~~~~~~~IN~wv~~~T~g~i~~~~~~~~~~~~t 160 (378)
T d1xqga_ 81 NKLSSFYSLKLIKRLYVDKSLNLSTEFISSTKRPYAKELETVDFKDKLEETKGQINNSIKDLTDGHFENILADNSVNDQT 160 (378)
T ss_dssp HHHTTTSSEEEEEEEEEETTSCCCHHHHHHTTTTTTTCEEEECHHHHHHHHHHHHHHHHHHHTTTSCSCCSCTTSCCTTC
T ss_pred HCCCCCCEEEEEECHHHCCCCCCCHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 45467725887312022034532488998766323654686432440567789999999984158715456898989875
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~l~na~~f~~~W~~~F~~~~T~~~~F~~~~~~~~~v~mm~~~~~~~~~~~~~l~~~vv~Lp~~~~~~sm~iilP~~~~ 240 (378)
T d1xqga_ 161 KILVVNAAYFVGKWMKKFSESETKESPFRVNKTDTKPVQMMNMEATFSMGNIDSINSKIIELPFQNKHLSMFILLPKDVE 240 (378)
T ss_dssp CEEEEEEEEEECCBSSCCCGGGCEEEEEESSSSCEEEEEEEEEEEEEEEEEEGGGTEEEEEEEBGGGSSEEEEEEESSCC
T ss_pred EEEEEEEEEEEEEECCCCCCCCCEECCEECCCCCEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCC
T ss_conf 17888875886002278755652215501289955764123101426422206777389995058995789999567665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~L~~l~~~l~~~~l~~~~~~~~~~~~~v~l~lPkF~i~~~~dl~~~L~~lGl~~~F~~~~adfs~is~~~~l~vs~ 320 (378)
T d1xqga_ 241 DESTGLEKIEKQLNSESLSQWTNPSTMANAKVKLSIPKFKVEKMIDPKASLENLGLKHIFSEDTSDFSGMSETKGVALSN 320 (378)
T ss_dssp SSSSSCHHHHHSCSHHHHHHHTCGGGCEEEEEEEEEECEEEEEEECTHHHHHHHTCCGGGCTTTCCCTTTCSCSSCCEEE
T ss_pred CCCCHHHHHHHHCCHHHHHHHHHHHHCEEEEEEEEEEEEEEEEEECHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 54433899998639889998743542534799998004899876255887775584000588877544577999923787
Q ss_pred ---------------------------------------------------------C
Q ss_conf ---------------------------------------------------------9
Q 000711 482 ---------------------------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------------------------s 482 (1338)
=
T Consensus 321 i~qk~~i~vdE~G~~a~~~t~~~~~~~~~~f~~drPFlf~I~d~~t~~~Lf~G~v~~P 378 (378)
T d1xqga_ 321 VIHKVSLEITEDGGDSIEVPGARILQHKDELNADHPFIYIIRHNKTRNIIFFGKFSSP 378 (378)
T ss_dssp EEEEEEEEECSCBCCCCCCTTTTTSSCCCCCBCCSCEEEEEEETTTTEEEEEEEECCC
T ss_pred EEEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEEECCCCCEEEEEEECCC
T ss_conf 6889999990685521223244457999879814998999999999978999993499
|
| >d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]
Probab=100.00 E-value=0 Score=28469.82 Aligned_cols=1 Identities=0% Similarity=-0.194 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~i~~~f~W~~~~i~~~~~~yl~~lG~tai~l~P~~e~~~~~~~~~~~~Y~~~dY~id~~~Gt~~df~~L 80 (378)
T d1jaea2 1 EKDANFASGRNSIVHLFEWKWNDIADECERFLQPQGFGGVQISPPNEYLVADGRPWWERYQPVSYIINTRSGDESAFTDM 80 (378)
T ss_dssp CCCCCCCTTCEEEEEETTCCHHHHHHHHHHTTTTTTEEEEECCCCSCBBCCTTCCGGGGGSBCCSCSEETTEEHHHHHHH
T ss_pred CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHH
T ss_conf 99998879970699702574999999999999980998899092620678899877565678632268889999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 V~~aH~~GI~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dln~~n 160 (378)
T d1jaea2 81 TRRCNDAGVRIYVDAVINHMTGMNGVGTSGSSADHDGMNYPAVPYGSGDFHSPCEVNNYQDADNVRNCELVGLRDLNQGS 160 (378)
T ss_dssp HHHHHHTTCEEEEEECCSBCCSSCEEBTTSCEEBTTTTBBTTTTBCGGGBCCCCBCCCTTCHHHHHHSBBTTBCBBCTTS
T ss_pred HHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99998567244564034421244677766555688744476788876556899886777875433100014567103389
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 p~V~~~l~~~~~~w~e~gvDGfR~Daa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gE~~~~~~~~~~~~~~~~~~ 240 (378)
T d1jaea2 161 DYVRGVLIDYMNHMIDLGVAGFRVDAAKHMSPGDLSVIFSGLKNLNTDYGFADGARPFIYQEVIDLGGEAISKNEYTGFG 240 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEETTGGGSCHHHHHHHHHTCCCCCGGGTCCTTCCCEEEEECCCCSSSSCCGGGTTTSS
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEHHCCCCCCCCCHHCCCCC
T ss_conf 99999999999999985778446531112578787777776543132112444555404532001553200110103665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~Fl~NHD~~R~~~~~~~~~~~~~~~~lA~af~lt~p~G~P 320 (378)
T d1jaea2 241 CVLEFQFGVSLGNAFQGGNQLKNLANWGPEWGLLEGLDAVVFVDNHDNQRTGGSQILTYKNPKPYKMAIAFMLAHPYGTT 320 (378)
T ss_dssp EEECHHHHHHHHHHHTTTSCGGGGGGCSGGGTCCCGGGEEECSCCTTHHHHSCTTCCCTTSHHHHHHHHHHHHHSCSSEE
T ss_pred HHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 00021332014554305762999999855440378540457624678777588763456898999999999998579887
Q ss_pred ---------------------------------------------------------C
Q ss_conf ---------------------------------------------------------9
Q 000711 482 ---------------------------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~iy~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~w~~~~r~~~i~~m~~frn~~~ 378 (378)
T d1jaea2 321 RIMSSFDFTDNDQGPPQDGSGNLISPGINDDNTCSNGYVCEHRWRQVYGMVGFRNAVE 378 (378)
T ss_dssp EEEECBCCSSTTCCCCBCTTSCBCCCEECTTSCEETTBCCGGGSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 8982365577777898888987778875866787878889989999999999866479
|
| >d1o6ca_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDP-N-acetylglucosamine 2-epimerase domain: UDP-N-acetylglucosamine 2-epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=28400.92 Aligned_cols=1 Identities=0% Similarity=0.138 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~k~Ki~~v~GtR~e~~kl~pli~~l~~~~~~~~~li~tG~H~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~ 80 (377)
T d1o6ca_ 1 KKLKVMTVFGTRPEAIKMAPLVLELKKYPEIDSYVTVTAQHRQMLDQVLDAFHIKPDFDLNIMKERQTLAEITSNALVRL 80 (377)
T ss_dssp CCEEEEEEECSHHHHHHHHHHHHHGGGCTTEEEEEEECCSCGGGTHHHHHHTTCCCSEECCCCCTTCCHHHHHHHHHHHH
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 98469999970585999999999997189998799993798899999985168777535443889988999999999850
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~kpD~v~v~GDr~e~la~a~aa~~~~Ipi~HiegG~~s~~~~~~~~de~~R~~iskls~~hf~~t~~~~~~L~~ 160 (377)
T d1o6ca_ 81 DELFKDIKPDIVLVHGDTTTTFAGSLAAFYHQIAVGHVEAGLRTGNKYSPFPEELNRQMTGAIADLHFAPTGQAKDNLLK 160 (377)
T ss_dssp HHHHHHHCCSEEEEETTCHHHHHHHHHHHHTTCEEEEESCCCCCSCTTTTTTHHHHHHHHHHHCSEEEESSHHHHHHHHH
T ss_pred HHHHHHCCCCEEEEEECCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCHHHHHHHHH
T ss_conf 56665336653676403454301566653114227999514565433234714554003565304886323466634433
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~G~~~~~I~~vG~~~~D~i~~~~~~~~~~~~~~~~~~~~~ilvt~Hr~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 240 (377)
T d1o6ca_ 161 ENKKADSIFVTGNTAIDALNTTVRDGYSHPVLDQVGEDKMILLTAHRRENLGEPMENMFKAIRRIVGEFEDVQVVYPVHL 240 (377)
T ss_dssp TTCCGGGEEECCCHHHHHHHHHCCSSCCCSTTTTTTTSEEEEECC----------HHHHHHHHHHHHHCTTEEEEEC---
T ss_pred HCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 03445427523420678888777777753334430578449998323101466337899998752123355653234552
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~ni~~~~~l~~~~fl~llk~s~~vIgnSss~i~Ea~~lg~P~Inir~~tERqe~~~~g~nilv~~ 320 (377)
T d1o6ca_ 241 NPVVREAAHKHFGDSDRVHLIEPLEVIDFHNFAAKSHFILTDSGGVQEEAPSLGKPVLVLRDTTERPEGVEAGTLKLAGT 320 (377)
T ss_dssp -CHHHHHHHHC--CCSSEEECCCCCHHHHHHHHHHCSEEEEC--CHHHHGGGGTCCEEEECSCCC---CTTTTSSEEECS
T ss_pred CCCCCHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHEEECCCCHHHHHHHHHHCEEEEECCCCCCCCHHHCCEEEECCC
T ss_conf 11321122101345651475132136889999864225641640467766665414898078875822000680598789
Q ss_pred --------------------------------------------------------C
Q ss_conf --------------------------------------------------------9
Q 000711 482 --------------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------------s 482 (1338)
+
T Consensus 321 ~~~~I~~~i~~~l~~~~~~~~~~~~~npYGdG~as~rI~~~L~~~~~~~k~~~~~~~ 377 (377)
T d1o6ca_ 321 DEENIYQLAKQLLTDPDEYKKMSQASNPYGDGEASRRIVEELLFHYGYRKEQPDSFT 377 (377)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHHCCCTTCCSCHHHHHHHHHHHHTTSCSCCCCCCC
T ss_pred CHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 999999999999749687763065889898982999999999985083336878999
|
| >d1a59a_ a.103.1.1 (A:) Citrate synthase {Antarctic bacterium DS2-3R [TaxId: 56673]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Citrate synthase superfamily: Citrate synthase family: Citrate synthase domain: Citrate synthase species: Antarctic bacterium DS2-3R [TaxId: 56673]
Probab=100.00 E-value=0 Score=28400.15 Aligned_cols=1 Identities=0% Similarity=-0.127 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~GL~Gv~v~~s~IS~Idg~~G~L~YRG~~i~dLa~~~sfEEVa~LL~~G~lP~~~el~~f~~~l~~~~~lp~~~~ 80 (377)
T d1a59a_ 1 EPTIHKGLAGVTADVTAISKVNSDTNSLLYRGYPVQELAAKCSFEQVAYLLWNSELPNDSELKAFVNFERSHRKLDENVK 80 (377)
T ss_dssp CCCCCGGGTTCCCCCCSSEEEETTTTEEEETTEEHHHHHHHCCHHHHHHHHHHSSCCCHHHHHHHHHHHHTSCSCCHHHH
T ss_pred CCCCCCCCCCCEECEEECEEEECCCCEEEECCEEHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 99889888998466075727858998799958439998714999999999978989499999999999998337986799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~l~~~p~~~~pm~~l~~~~s~l~~~~~~~~~~~~~~~~~~~~~lia~~~~i~a~~~r~~~g~~~~~p~~~~~~~~~~~~ 160 (377)
T d1a59a_ 81 GAIDLLSTACHPMDVARTAVSVLGANHARAQDSSPEANLEKAMSLLATFPSVVAYDQRRRRGEELIEPREDLDYSANFLW 160 (377)
T ss_dssp HHHTTSCTTSCHHHHHHHHHHHHHHTCTTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSCHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 99997302002113445555320344532344657777777777888899888877763268887789876256999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~l~~~Lvl~aDHg~n~StfaaR~vaSt~~d~~~~~~a~~~al~Gp~hGga~~~~~~~l~~i~~~~~~ 240 (377)
T d1a59a_ 161 MTFGEEAAPEVVEAFNVSMILYAEHSFNASTFTARVITSTLADLHSAVTGAIGALKGPLHGGANEAVMHTFEEIGIRKDE 240 (377)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTTTTHHHHHHHHHHHSCCCSSC
T ss_pred HHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 62123320888877677876542477676236666664258514467787877603420111278999999998621566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~v~~~l~~~~~i~GfGH~vy~~~DPR~~~l~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~k~l~pNvD~ 320 (377)
T d1a59a_ 241 SLDEAATRSKAWMVDALAQKKKVMGFGHRVYKNGDSRVPTMKSALDAMIKHYDRPEMLGLYNGLEAAMEEAKQIKPNLDY 320 (377)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCTTBCCSSCSSCCTTHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHCCCBCTHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf 50266777899999998667866466874445667406777767777665412206677899999999971799978176
Q ss_pred --------------------------------------------------------C
Q ss_conf --------------------------------------------------------9
Q 000711 482 --------------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------------s 482 (1338)
=
T Consensus 321 ~~~~l~~~lG~p~~~~~~lf~i~R~~G~~AH~~Eq~~~~~l~RP~~~Y~G~~~R~~p 377 (377)
T d1a59a_ 321 PAGPTYNLMGFDTEMFTPLFIAARITGWTAHIMEQVADNALIRPLSEYNGPEQRQVP 377 (377)
T ss_dssp HHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCCSCCCCCCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCC
T ss_conf 999999996849667769999999999999999998579975746540389999897
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=100.00 E-value=0 Score=28398.95 Aligned_cols=1 Identities=0% Similarity=-1.556 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~~~~~~~~p~~~l~~PGP~~v~~~Vl~am~~~~~~hr~~ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~ 80 (377)
T d1vjoa_ 1 ISINDNQRLQLEPLEVPSRLLLGPGPSNAHPSVLQAMNVSPVGHLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTA 80 (377)
T ss_dssp CCCCCTTCCCCCSCCCCCCEECSSSCCCCCHHHHHHHSSCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHH
T ss_conf 96473003446799987266610899789999999757688897888999999999999999859999809998484899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~ 160 (377)
T d1vjoa_ 81 AMEATIANAVEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQ 160 (377)
T ss_dssp HHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEEC
T ss_pred HHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEEECCCEEEE
T ss_conf 99999984334344420242001344444454320311100135778743202456666057640345554202334630
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~i~~i~~~~~~~g~~~~vDa~~~~g~~~~~~~~~~~d~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (377)
T d1vjoa_ 161 PLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDM 240 (377)
T ss_dssp CCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTTCH
T ss_pred CHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCEEECC
T ss_conf 50554334552264389960002333321012456505640212440589779974132667765203589974011001
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~rs~~v~~~~~p~ 320 (377)
T d1vjoa_ 241 NLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCIPD 320 (377)
T ss_dssp HHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCT
T ss_pred CHHHHCCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHCCCEEEEEECCC
T ss_conf 10110257653346530142022257777666533725787888887654566664168546068276097499998999
Q ss_pred --------------------------------------------------------C
Q ss_conf --------------------------------------------------------9
Q 000711 482 --------------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~l~~~L~~~~gI~v~~G~~~~~~~~~Ris~~g~~~t~edi~~lv~al~~~l~ 377 (377)
T d1vjoa_ 321 GVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR 377 (377)
T ss_dssp TCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHCCCEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 989999999998649999966862326998998267578999999999999999859
|
| >d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Glycosyl Hydrolase Family 88 domain: Unsaturated glucuronyl hydrolase species: Bacillus sp. GL1 [TaxId: 84635]
Probab=100.00 E-value=0 Score=28397.43 Aligned_cols=1 Identities=0% Similarity=-1.225 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~g~~~~~~~~~Wt~Gf~~G~lwl~ye~Tgd~~~~~~a~~~~~~~~~~~~~ 80 (377)
T d2d5ja1 1 MWQQAIGDALGITARNLKKFGDRFPHVSDGSNKYVLNDNTDWTDGFWSGILWLCYEYTGDEQYREGAVRTVASFRERLDR 80 (377)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTCEEEEESSSSSEEEESSCSSCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 94899999999999988855101797748998377408983376479999999999869999999999999999975224
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~hd~Gf~~~~s~~~~y~~Tgd~~y~~~a~~~a~~L~~r~~~~~g~~~~w~~~~~~~~~~~~~iD~lm~~~~l~~~ 160 (377)
T d2d5ja1 81 FENLDHHDIGFLYSLSAKAQWIVEKDESARKLALDAADVLMRRWRADAGIIQAWGPKGDPENGGRIIIDCLLNLPLLLWA 160 (377)
T ss_dssp TTTCSSSTHHHHHHTTHHHHHHHHCCHHHHHHHHHHHHHHHTTEETTTTEECCSSSTTCTTTTTEEEGGGGGGHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 45566347631257679999987299989999999999999831867785435787888777766055125429999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~tgd~~y~~~A~~h~~~~~~~l~r~d~s~~~~~~~~~~tG~~~~~~t~qG~~~~s~WsRGqaW~i~gl~~~~~~t~~~ 240 (377)
T d2d5ja1 161 GEQTGDPEYRRVAEAHALKSRRFLVRGDDSSYHTFYFDPENGNAIRGGTHQGNTDGSTWTRGQAWGIYGFALNSRYLGNA 240 (377)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHTBBTTSCBCSEEEECTTTCCEEEEECSSSSSTTSCBHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHCCH
T ss_conf 88509876999999999999998268899748898865899862578888788773167632199999999999983881
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~l~~a~~~a~~~l~~~~~dgi~~wd~~~p~~~~~~~DsSa~Ai~A~gll~L~~~~~~~~~~~~~Y~~~a~~i~~~l~~~ 320 (377)
T d2d5ja1 241 DLLETAKRMARHFLARVPEDGVVYWDFEVPQEPSSYRDSSASAITACGLLEIASQLDESDPERQRFIDAAKTTVTALRDG 320 (377)
T ss_dssp HHHHHHHHHHHHHHTTCCTTSCCBSBTTSCCCTTSCBCHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 78999999999999738877885321566678999877326789999999999852577267999999999999999876
Q ss_pred --------------------------------------------------------C
Q ss_conf --------------------------------------------------------9
Q 000711 482 --------------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~iygDYy~~Eal~r~~~~~~~~w~~~~~ 377 (377)
T d2d5ja1 321 YAERDDGEAEGFIRRGSYHVRGGISPDDYTIWGDYYYLEALLRLERGVTGYWYERGR 377 (377)
T ss_dssp TBCCCCSSCCCSBSCBCSBTTTTBSSSBCBHHHHHHHHHHHHHHHHCCCTTSSCTTC
T ss_pred HHCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 600689988844631635789999988673559999999999997388653745899
|
| >d1ci9a_ e.3.1.1 (A:) Esterase EstB {Burkholderia gladioli [TaxId: 28095]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta-lactamase/transpeptidase-like superfamily: beta-lactamase/transpeptidase-like family: beta-Lactamase/D-ala carboxypeptidase domain: Esterase EstB species: Burkholderia gladioli [TaxId: 28095]
Probab=100.00 E-value=0 Score=28396.17 Aligned_cols=1 Identities=0% Similarity=0.537 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~a~l~~~id~~~~~~~~~~~~pG~~~~V~~~g~~v~~~~~G~ad~~~~~~~~~~t~f~iaSvtK~~ta~~v~~Lve~G~l 80 (377)
T d1ci9a_ 1 AASLAARLDAVFDQALRERRLVGAVAIVARHGEILYRRAQGLADREAGRPMREDTLFRLASVTKPIVALAVLRLVARGEL 80 (377)
T ss_dssp CHHHHHHHHHHHHHHHHTTSCSEEEEEEEETTEEEEEEEEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHHHHHHTSS
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCC
T ss_conf 94189999999999998289875999999999999998478624455988999986860326899999999999975996
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~ldd~v~~ylP~~~~~~~~~~~~~ITi~~Ll~htsGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (377)
T d1ci9a_ 81 ALDAPVTRWLPEFRPRLADGSEPLVTIHHLLTHTSGLGYWLLEGAGSVYDRLGISDGIDLRDFDLDENLRRLASAPLSFA 160 (377)
T ss_dssp CTTSBGGGTCTTCCCBCTTSCCCCCBHHHHHHTCSSCCCHHHHCTTSHHHHHTCCCSSSCCSSCHHHHHHHHHHSBCSSC
T ss_pred CCCCCCHHHHHHHHCCCCCCCCCCEEHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 53322112331110134324577515013035532466633444113565540245665455899999999862888679
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 PG~~~~Ys~~~~lLg~iie~vtg~~~~~~~~e~i~~PLGm~~t~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (377)
T d1ci9a_ 161 PGSGWQYSLALDVLGAVVERATGQPLAAAVDALVAQPLGMRDCGFVSAEPERFAVPYHDGQPEPVRMRDGIEVPLPEGHG 240 (377)
T ss_dssp TTSCCCCCTHHHHHHHHHHHHHTSCHHHHHHHHTHHHHTCCSCBSCCSCGGGBCCCEECCSSSCEECCTTEEEECCTTSC
T ss_pred CCCEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99627607689999998763133203455467786213875343357826640000024677653134654345545666
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~g~gGl~sta~Dlarf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~G~~~~~~~~~ 320 (377)
T d1ci9a_ 241 AAVRFAPSRVFEPGAYPSGGAGMYGSADDVLRALEAIRANPGFLPETLADAARRDQAGVGAETRGPGWGFGYLSAVLDDP 320 (377)
T ss_dssp SEEEECGGGGGCTTSCCCTTTCCEECHHHHHHHHHHHHHCSSSSCHHHHHHHHSCSSCGGGCTTSTTEEECSSSEEESCH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEECEEEECCC
T ss_conf 54345763223645555677632235999999999765116787077876650102477766678971241011430376
Q ss_pred --------------------------------------------------------C
Q ss_conf --------------------------------------------------------9
Q 000711 482 --------------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------------s 482 (1338)
|
T Consensus 321 ~~~~~~~~~g~~~h~G~~gt~~~idP~~~l~vv~ltN~~~~~~~~~~~~~l~~~vYa 377 (377)
T d1ci9a_ 321 AAAGTPQHAGTLQWGGVYGHSWFVDRALGLSVLLLTNTAYEGMSGPLTIALRDAVYA 377 (377)
T ss_dssp HHHTCSSCTTCEEEEETTTEEEEEEGGGTEEEEEEESEETHHHHSHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCEECCCCCCEEEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf 535788999856626821418999944998999988489999875999999982189
|
| >d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Gastric lipase domain: Gastric lipase species: Dog (Canis familiaris) [TaxId: 9615]
Probab=100.00 E-value=0 Score=28395.04 Aligned_cols=1 Identities=0% Similarity=0.338 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~y~~e~h~v~t~DG~~l~~~ri~~~~~~~~~~~~~~~vlllHG~~~~~~~~~~~~~~ 80 (377)
T d1k8qa_ 1 AFGKLHPTNPEVTMNISQMITYWGYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWISNLPN 80 (377)
T ss_dssp CCCBSSCCCGGGGCCHHHHHHHTTCCCEEEEEECTTSEEEEEEEECSCSSCCTTTTTCCEEEEECCTTCCGGGGSSSCTT
T ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCHHHHHHCCCC
T ss_conf 97667789987677889999984998558999817999898998468888876689989089989996314677442752
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~sla~~L~~~Gy~V~~~D~rG~G~S~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~i~~i~~~~g~~~v~lvGhS~GG~ia~ 160 (377)
T d1k8qa_ 81 NSLAFILADAGYDVWLGNSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKKTGQDKLHYVGHSQGTTIGF 160 (377)
T ss_dssp TCHHHHHHHTTCEEEECCCTTSTTSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHHHCCSCEEEEEETHHHHHHH
T ss_pred CHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHH
T ss_conf 06999999879989998089988888887778752220137799984341799999999972999879997332699999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~a~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (377)
T d1k8qa_ 161 IAFSTNPKLAKRIKTFYALAPVATVKYTETLINKLMLVPSFLFKLIFGNKIFYPHHFFDQFLATEVCSRETVDLLCSNAL 240 (377)
T ss_dssp HHHHHCHHHHTTEEEEEEESCCSCCSSCCSGGGGGGTSCHHHHHHHSCSSEESCCCHHHHHHHHHTTTBTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHCEEEEECCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 99986323320004675214544444114678998750136666642000114046777765431022034667877655
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~vPvL~i~ 320 (377)
T d1k8qa_ 241 FIICGFDTMNLNMSRLDVYLSHNPAGTSVQNVLHWSQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYYNLTDMHVPIAVWN 320 (377)
T ss_dssp HHHHCCCGGGSCGGGHHHHHTTCCCCEEHHHHHHHHHHHHHCSCBCCCCSSHHHHHHHHSSSSCCBCCGGGCCSCEEEEE
T ss_pred HHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEE
T ss_conf 42037771114677766666315553359999999999753741220330345556651345751222754899989999
Q ss_pred --------------------------------------------------------C
Q ss_conf --------------------------------------------------------9
Q 000711 482 --------------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------------s 482 (1338)
-
T Consensus 321 G~~D~~~~~~~~~~l~~~lp~~~~~~~i~~~GH~d~~~~~~a~~~v~~~I~~fl~~~ 377 (377)
T d1k8qa_ 321 GGNDLLADPHDVDLLLSKLPNLIYHRKIPPYNHLDFIWAMDAPQAVYNEIVSMMGTD 377 (377)
T ss_dssp ETTCSSSCHHHHHHHHTTCTTEEEEEEETTCCTTHHHHCTTHHHHTHHHHHHHHHTC
T ss_pred ECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 589972289999999997799759999699988303424454999999999997229
|
| >d2i71a1 e.72.1.1 (A:1-377) Hypothetical protein SSO1389 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: SSO1389-like superfamily: SSO1389-like family: Cas DxTHG domain: Hypothetical protein SSO1389 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=28394.64 Aligned_cols=1 Identities=0% Similarity=-1.756 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 m~~l~ia~wG~p~~w~~~~Y~~~~~~~~~~~s~~~l~~~~~~d~~vi~~~dSl~~~~~~~~~d~~~~~~~~~~~~~~~l~ 80 (377)
T d2i71a1 1 MASIVFSTIGNPKGYQKVTYEIDGEKFESNVSVLALRDLLKVDKTVVILGISVADVYNCKYADYRSCKECIIQNSKNDLG 80 (377)
T ss_dssp CEEEEEEEESCTTCCCCEEEEETTEEEEESSHHHHHHHHTTCSEEEEEEEGGGGGGGTCCCSCHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEECCCCCCCEEEEEEECCCEEECCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 95499993478665728999978931204455999998747883999997301123468822799999999999998608
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~viv~P~vg~~f~g~~~~~~~~~~~~l~~~l~~~~~~eI~lD~thGiNy~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 160 (377)
T d2i71a1 81 ISESYVVAPNVYQKFKGKPDHYFTYIYYHSLRILEKEGINEVFIDTTHGINYMGVLAKEAIQLAVSAYAAKSEKEVKVSL 160 (377)
T ss_dssp CCSCEEEECCCBTTEESCTHHHHHHHHHHHHHHHHHHTEEEEEEEEEECCTTHHHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 88449992797628856888999999999999850389868999777870059999999999999999974578744999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~nsdP~~~~~~~~~~I~~i~~~~i~p~~~~~~i~~~fl~~~k~~~~~~~ke~~~~i~~~~~al~~gl~lyL~~~~~~~~l 240 (377)
T d2i71a1 161 YNSDPVGKDVSDTVKLHEIEAIKISPLSGLKYVTYQILNKDKNFFNKIFSDSVNAIPRFATALDNGLFIYLSEKDSSLHL 240 (377)
T ss_dssp EECCCTTCCTTSEEECEEEEEEEECHHHHHHHHHHHHHTSCTTTTTTSSTTHHHHHHHHHHHHHTTCHHHHHHSCCHHHH
T ss_pred EECCCCCCCCCCCEEEEEECCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHH
T ss_conf 94776568887746999840126221466554303566667777678888888899999986540429999874022327
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~e~~~~~~~~~~~~e~~~~~~~~~~~~~y~~~~~~~~~~i~~~~~~~~l~~l~e~~~~~v~~~~i~~Ei~~i~~~~~~ 320 (377)
T d2i71a1 241 KRLEDDLSKDPLLTPSENEINVVYKDMKYALSHALFYVISRFSGNVDLDTLRHYAETYADKVTRAIIENEVDKIEKYQMG 320 (377)
T ss_dssp HHHHHHHHSCCEEEECSSCEEEECCCHHHHHHHHHHHHHGGGCSCEEHHHHHHHHHHHSCHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 88998630002330465312302330788999999998740230210899999998861356999999999988861477
Q ss_pred --------------------------------------------------------C
Q ss_conf --------------------------------------------------------9
Q 000711 482 --------------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~~k~~~~~~~~~d~RNF~AHaGLe~nvt~vk~~~~~i~v~y~e~~~~i~~~l 377 (377)
T d2i71a1 321 SERKLLGEYMKVEGKGFDKRILYAHGGLPYAGTYVYKEKDKVYVTYGDKIDEIERQI 377 (377)
T ss_dssp SSCEEGGGTC---------CHHHHTTTCCTTTCEEEEETTEEEEECGGGHHHHHHHC
T ss_pred CCHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEHHHHHHHHHHCC
T ss_conf 760478886310147885300100348652729999669889998787599998419
|
| >d1jmma_ b.30.6.1 (A:) V-region of surface antigen I/II (SA I/II, PAC) {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Supersandwich superfamily: V-region of surface antigen I/II (SA I/II, PAC) family: V-region of surface antigen I/II (SA I/II, PAC) domain: V-region of surface antigen I/II (SA I/II, PAC) species: Streptococcus mutans [TaxId: 1309]
Probab=100.00 E-value=0 Score=28394.53 Aligned_cols=1 Identities=0% Similarity=-0.659 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~kdla~Y~~~l~~Y~~e~~~y~~alae~ek~KnedGyl~~p~aQ~LvF~~Ep~A~~ti~~~gk~~~a~~~~~~~~~~~~~ 80 (377)
T d1jmma_ 1 QKDLADYPVKLKAYEDEQASIKAALAELEKHKNEDGNLTEPSAQNLVYDLEPNANLSLTTDGKFLKASAVDDAFSKSTSK 80 (377)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTSBSSCCCBCEECSCCTTCEEEEEESSEEECHHHHHHHHHSGGGH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCCHHHHHHHHCCCCCH
T ss_conf 94077889999999999999999999998740556663640145414316787268885255311301112233044303
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~v~l~kg~~vtvTYtNL~nSsynGKKI 160 (377)
T d1jmma_ 81 AKYVQKILQLDDLDITNLEQSNDVASSMELYGNFGDKAGWSTTVSNNSQVKWGSVLLERGQSATATYTNLQNSYYNGKKI 160 (377)
T ss_dssp HHHHTTEECGGGCCGGGGCSGGGEESSCCEEETTSTTSSCEETTTBTSCCEEEEEEECTTCEEEEEEECCSSCEETTEEE
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCEE
T ss_conf 33101010223443224333322000002355555445501024567753025699617998999962754442178323
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 sKvvytYtl~~s~s~~g~~i~~~l~~DPT~t~f~~~~~g~~~~~~~~~v~~~vkFYDe~G~~i~~~~Al~S~sSLN~~~~ 240 (377)
T d1jmma_ 161 SKIVYKYTVDPKSKFQGQKVWLGIFTDPTLGVFASAYTGQVEKNTSIFIKNEFTFYDEDGKPINFDNALLSVASLNREHN 240 (377)
T ss_dssp EEEEEEEEECTTCCCSSSCEEEEEESSGGGCEEEECCCSSCBSSCEEEEEEEEEEEETTSCBCCEEEEEEEECCCCBCSS
T ss_pred EEEEEEEEECCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEEEECCCCCEECCCCCEEEEECCCCCCC
T ss_conf 69999999555788888624689815995279998512666656643899999999789989226602687410258998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~iE~V~~~ng~fv~I~GSSV~~~~g~~ya~~~~~~~~~~~Gsr~~~~~~~~~~s~WD~~~s~~ayYGA~v~~~~g~~~~~ 320 (377)
T d1jmma_ 241 SIEMAKDYSGKFVKISGSSIGEKNGMIYATDTLNFKQGEGGSRWTMYKNSQAGSGWDSSDAPNSWYGAGAIKMSGPNNHV 320 (377)
T ss_dssp EEEEEESCSSEEECBTTCSEEEETTEEEECSSCCSSTTSTTCSSCSSCCSSTTCCCCSSSCTTGGGGCEEEEEEESCEEE
T ss_pred CEEEEECCCCEEEEECCCEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEE
T ss_conf 46899748971899579766865994772677432346676421223467766787778997631123778970895489
Q ss_pred --------------------------------------------------------C
Q ss_conf --------------------------------------------------------9
Q 000711 482 --------------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------------s 482 (1338)
.
T Consensus 321 t~g~~~a~~~~~~~~~~~~~~~d~~~~~~~~iWfa~ns~i~a~~vp~~~~e~Pt~P~ 377 (377)
T d1jmma_ 321 TVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPV 377 (377)
T ss_dssp EEEEEEGGGTSCGGGSCCCTTCCTTCCBCSEEEECCBSCCCSSSCCBCCCCCCCCCC
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 970455432246644455666655567776231674378765458999987899989
|
| >d1nm8a1 c.43.1.3 (A:9-385) Carnitine acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-dependent acyltransferases superfamily: CoA-dependent acyltransferases family: Choline/Carnitine O-acyltransferase domain: Carnitine acetyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28397.50 Aligned_cols=1 Identities=0% Similarity=-0.294 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~Q~sLP~LPvP~L~~Tl~ryL~s~kPl~s~ee~~~t~~~v~~F~~~~g~G~~Lq~~L~~~~~~~~nwl~~~W~~~~YL~ 80 (377)
T d1nm8a1 1 HHTDPLPRLPVPPLQQSLDHYLKALQPIVSEEEWAHTKQLVDEFQASGGVGERLQKGLERRARKTENWLSEWWLKTAYLQ 80 (377)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHSSSTTHHHHHHHHTTT
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
T ss_conf 96567998999999999999999865149999999999999998736860799999999975147773468899886435
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~R~pl~~~~n~~~~~~~~~~~~~~~q~~rAA~l~~~~l~f~~~l~~~~l~~~~~~~~plcM~qy~~lF~t~RiP~~~~D~ 160 (377)
T d1nm8a1 81 YRQPVVIYSSPGVMLPKQDFVDLQGQLRFAAKLIEGVLDFKVMIDNETLPVEYLGGKPLCMNQYYQILSSCRVPGPKQDT 160 (377)
T ss_dssp CCSCSBTTTBCEEECCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCEETTEECCCGGGGGTTTEEEECCSSSCE
T ss_pred CCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCEEECHHHHHHHCCCEECCCCCCCC
T ss_conf 88785466766300267777760679999999999999999998728778656589944189998761765068999883
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 l~~~~~~~~~~~HIvV~~~g~~ykv~v~d~~g~~ls~~ei~~~l~~I~~~~~~~~~~~vg~LTt~~Rd~Wa~~r~~L~~~ 240 (377)
T d1nm8a1 161 VSNFSKTKKPPTHITVVHNYQFFELDVYHSDGTPLTADQIFVQLEKIWNSSLQTNKEPVGILTSNHRNSWAKAYNTLIKD 240 (377)
T ss_dssp EEECTTSSSCCCEEEEEETTEEEEEECBCTTSCBCCHHHHHHHHHHHHHTCCCCCSCCGGGGGGSCHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCCCCEEEEEECCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 20057778888769999899899999988999899899999999999961104688886405678728999999998608
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~N~~~L~~Iesalfvv~LDd~~p~~~~e~~~~~~~~~~lhG~g~~~~~~NRW~DKs~q~IV~~nG~~g~~~EHS~~DG~ 320 (377)
T d1nm8a1 241 KVNRDSVRSIQKSIFTVCLDATMPRVSEDVYRSHVAGQMLHGGGSRLNSGNRWFDKTLQFIVAEDGSCGLVYEHAAAEGP 320 (377)
T ss_dssp HHHHHHHHHHHHSSCEEEEECCCSCCCSTTHHHHHHHHHHHCSCTTTTTTSCCTTBSEEEEEETTSCEEEEECTTSCCHH
T ss_pred CHHHHHHHHHHHCEEEEEECCCCCCCCCHHHHHHHHHHHEECCCCCCCCCCCCCCCCEEEEEECCCCEEEECCCCCCCHH
T ss_conf 60799999997547888833788888613666666555033687557987726665517999789877862267761289
Q ss_pred --------------------------------------------------------C
Q ss_conf --------------------------------------------------------9
Q 000711 482 --------------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~v~~~~~~v~~~~~~~~~~~~~~~~~~~p~~L~f~l~~~i~~~I~~a~~~~~~li~D 377 (377)
T d1nm8a1 321 PIVTLLDYVIEYTKKPELVRSPMVPLPMPKKLRFNITPEIKSDIEKAKQNLSIMIQD 377 (377)
T ss_dssp HHHHHHHHHHHHHHSCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999987234666788778899975878976989999999999999998259
|
| >d1f6da_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDP-N-acetylglucosamine 2-epimerase domain: UDP-N-acetylglucosamine 2-epimerase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=28320.86 Aligned_cols=1 Identities=0% Similarity=-1.856 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 MKi~~v~GtR~e~~kl~pli~~l~~~~~~~~~li~tG~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (376)
T d1f6da_ 1 MKVLTVFGTRPEAIKMAPLVHALAKDPFFEAKVCVTAQHREMLDQVLKLFSIVPDYDLNIMQPGQGLTEITCRILEGLKP 80 (376)
T ss_dssp CEEEEEECSHHHHHHHHHHHHHHHHCTTCEEEEEECCTTGGGGHHHHHHTTCCCSEECCCCSSSSCHHHHHHHHHHHHHH
T ss_pred CEEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 96999998267399999999999738998779999088989999999862878774400488999899999999986478
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~kPD~v~v~GDr~e~la~a~aa~~~~ipi~HiegG~~s~~~~~~~pde~~R~~iskls~~hf~~~~~~~~~L~~~G 160 (376)
T d1f6da_ 81 ILAEFKPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGLRTGDLYSPWPEEANRTLTGHLAMYHFSPTETSRQNLLREN 160 (376)
T ss_dssp HHHHHCCSEEEEETTCHHHHHHHHHHHTTTCCEEEESCCCCCSCTTSSTTHHHHHHHHHHTCSEEEESSHHHHHHHHHTT
T ss_pred HHHHCCCCCEEEECCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHCC
T ss_conf 89745676224310344313689998740753899852446542000474066554203200488743478886877518
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~I~~vG~~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvt~H~~~~~~~~~~~i~~~l~~~~~~~~~~~ 240 (376)
T d1f6da_ 161 VADSRIFITGNTVIDALLWVRDQVMSSDKLRSELAANYPFIDPDKKMILVTGHRRESFGRGFEEICHALADIATTHQDIQ 240 (376)
T ss_dssp CCGGGEEECCCHHHHHHHHHHHHTTTCHHHHHHHHTTCTTCCTTSEEEEECCCCBSSCCHHHHHHHHHHHHHHHHCTTEE
T ss_pred CCCCCCCEECCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEEE
T ss_conf 98653412167248788887765423512321111022334777766998335411112009999999865434214047
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ii~p~~~~~~~~~~~~~~~~~~~ni~~~~~l~~~~fl~ll~~a~~vignSssgi~Ea~~lg~P~Inir~~ter~~~~~~g 320 (376)
T d1f6da_ 241 IVYPVHLNPNVREPVNRILGHVKNVILIDPQEYLPFVWLMNHAWLILTDSGGIQEEAPSLGKPVLVMRDTTERPEAVTAG 320 (376)
T ss_dssp EEEECCBCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHHCSEEEESSSGGGGTGGGGTCCEEECSSCCSCHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHCEEEEECCCCHHHHHHHHCCCEEECCCCCCCCCCEECC
T ss_conf 85254432124446766640444513323556789999984163998368506766787489889727876576412368
Q ss_pred -------------------------------------------------------C
Q ss_conf -------------------------------------------------------9
Q 000711 482 -------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~i~v~~~~~~I~~ai~~~l~~~~~~~~~~~~~npYGdG~as~rI~~iLk~~~i~~ 376 (376)
T d1f6da_ 321 TVRLVGTDKQRIVEEVTRLLKDENEYQAMSRAHNPYGDGQACSRILEALKNNRISL 376 (376)
T ss_dssp SEEECCSSHHHHHHHHHHHHHCHHHHHHHHHSCCTTCCSCHHHHHHHHHHHTCCCC
T ss_pred EEEECCCCHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 06987899999999999997285766530457898989849999999998568999
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=28320.84 Aligned_cols=1 Identities=0% Similarity=0.172 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~ip~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~E~~la~~~g~~~ai~~~sgt~Al~~al~al~~~~gdeVi~~~~~ 80 (376)
T d1mdoa_ 1 DFLPFSRPAMGAEELAAVKTVLDSGWITTGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMT 80 (376)
T ss_dssp CCBCSCCCCCCHHHHHHHHHHHHHTCCSSSHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 98668999999999999999996699768977999999999998819599968889999999998089998989872343
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~ai~~~g~~pv~~d~~~~~~~~d~~~l~~~i~~~tkaIi~~h~~G~~~~~~~i~~i~~~~~i~vIeD~a~a~g~~ 160 (376)
T d1mdoa_ 81 WVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVHYAGAPADLDAIYALGERYGIPVIEDAAHATGTS 160 (376)
T ss_dssp CHHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCE
T ss_pred CCCCCCCHHCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCEEEECCCHHCCCE
T ss_conf 42110001103431244114433347899999975478981999867888715333899988741946996464310674
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~g~~g~~~~Sf~~~K~l~~g~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~ 240 (376)
T d1mdoa_ 161 YKGRHIGARGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLN 240 (376)
T ss_dssp ETTEETTSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHH
T ss_pred ECCEECCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHH
T ss_conf 68820466657664278867787788888997125679998764036876443332233323311000012353440145
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 Aai~~~qL~~~~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rd~l~~~L~~~gI~~~~ 320 (376)
T d1mdoa_ 241 AAIALAQLQKLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGL 320 (376)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 66655433333579999866534554311465433221234444544332222220002133399999999987998465
Q ss_pred -------------------------------------------------------C
Q ss_conf -------------------------------------------------------9
Q 000711 482 -------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~i~~ 376 (376)
T d1mdoa_ 321 HFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAG 376 (376)
T ss_dssp CCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred ECCCHHCCHHHHHHCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 78532308998952887898799999859798448999999999999999999729
|
| >d2vata1 c.69.1.40 (A:7-382) Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG {Acremonium chrysogenum [TaxId: 5044]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG species: Acremonium chrysogenum [TaxId: 5044]
Probab=100.00 E-value=0 Score=28320.53 Aligned_cols=1 Identities=0% Similarity=0.204 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~~~i~~F~le~G~~l~~~~laY~t~G~ln~~~~NaVlv~h~ltg~~~~~~WW~~liG~g~alDt~kyfV 80 (376)
T d2vata1 1 NRFEASLDAQDIARISLFTLESGVILRDVPVAYKSWGRMNVSRDNCVIVCHTLTSSAHVTSWWPTLFGQGRAFDTSRYFI 80 (376)
T ss_dssp CHHHHTSCCCEEEEEEEEECTTSCEEEEEEEEEEEESCCCTTSCCEEEEECCTTCCSCGGGTCGGGBSTTSSBCTTTCEE
T ss_pred CCHHHCCCCCCEEEECCEEECCCCCCCCCEEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCEEE
T ss_conf 93220345475375376782799885895699996256488899889984887677021234887077998637463389
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 I~~n~lG~~~gst~p~s~~p~~~~~~~yg~~FP~~ti~D~v~aq~~ll~~LGI~~l~aViG~SmGGmqal~wa~~~Pd~v 160 (376)
T d2vata1 81 ICLNYLGSPFGSAGPCSPDPDAEGQRPYGAKFPRTTIRDDVRIHRQVLDRLGVRQIAAVVGASMGGMHTLEWAFFGPEYV 160 (376)
T ss_dssp EEECCTTCSSSSSSTTSBCTTTC--CBCGGGCCCCCHHHHHHHHHHHHHHHTCCCEEEEEEETHHHHHHHHHGGGCTTTB
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCHHHH
T ss_conf 98346788767888877896212377545568852057889999999987386617886134278899999998361777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~li~Ia~~~~~s~~~~a~~~~~~~ai~~Dp~w~~G~Y~~~~~p~~GL~~Ar~~~~~ty~S~~~~~~rf~~~~~~~~gr~ 240 (376)
T d2vata1 161 RKIVPIATSCRQSGWCAAWFETQRQCIYDDPKYLDGEYDVDDQPVRGLETARKIANLTYKSKPAMDERFHMAPGVQAGRN 240 (376)
T ss_dssp CCEEEESCCSBCCHHHHHHHHHHHHHHHHSTTSGGGTCCTTSCCHHHHHHHHHHHHHHTSCHHHHHHHSCCCCCCC----
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCC
T ss_conf 52312356523455778888999987422212457775433116789999999999984599999999723224422200
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vesyL~~~g~k~~~rfDansyl~l~~a~d~~Di~~~~~g~l~~aL~~I~a~~L 320 (376)
T d2vata1 241 ISSQDAKKEINGTDSGNSHRAGQPIEAVSSYLRYQAQKFAASFDANCYIAMTLKFDTHDISRGRAGSIPEALAMITQPAL 320 (376)
T ss_dssp -----------------------CGGGHHHHHHHHHHHHHHSSCHHHHHHHHHHHHTCBTTTTTCSSHHHHHTTCCSCEE
T ss_pred CCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCEE
T ss_conf 01000111013444332222343156799999987765530555012899999998503333338899999850899989
Q ss_pred -------------------------------------------------------C
Q ss_conf -------------------------------------------------------9
Q 000711 482 -------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------s 482 (1338)
-
T Consensus 321 vI~~~sD~lFPp~~~~e~a~~l~~a~~~~I~S~~GHDaFL~e~~~~~~~I~~FL~q 376 (376)
T d2vata1 321 IICARSDGLYSFDEHVEMGRSIPNSRLCVVDTNEGHDFFVMEADKVNDAVRGFLDQ 376 (376)
T ss_dssp EEECTTCSSSCHHHHHHHHHHSTTEEEEECCCSCGGGHHHHTHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 99868420849999999998627874999899988652266999999999999748
|
| >d1k9oi_ e.1.1.1 (I:) Alaserpin (serpin 1) {Tobacco hornworm (Manduca sexta) [TaxId: 7130]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Serpins superfamily: Serpins family: Serpins domain: Alaserpin (serpin 1) species: Tobacco hornworm (Manduca sexta) [TaxId: 7130]
Probab=100.00 E-value=0 Score=28319.59 Aligned_cols=1 Identities=100% Similarity=2.331 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
|
T Consensus 1 g~~~~~~~l~~~~~~F~~~l~~~~~~~~~~~N~v~SP~si~~~La~l~~ga~g~T~~el~~~L~~~~~~~~~~~~~~l~~ 80 (376)
T d1k9oi_ 1 GETDLQKILRESNDQFTAQMFSEVVKANPGQNVVLSAFSVLPPLGQLALASVGESHDELLRALALPNDNVTKDVFADLNR 80 (376)
T ss_dssp CTHHHHTTHHHHHHHHHHHHHHHHHTTSTTSCEEECSGGGHHHHHHHTTTBCTHHHHHHHHHTTCSCTTHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 98558999999999999999999983298981998889999999999986673899999997099985457999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~f~~~~~~~y~~~~~~vdf~~~~~a~~~IN~wv~~~T~g~I~~~~~~~~l~~~~ 160 (376)
T d1k9oi_ 81 GVRAVKGVDLKMASKIYVAKGLELNDDFAAVSRDVFGSEVQNVDFVKSVEAAGAINKWVEDQTNNRIKNLVDPDALDETT 160 (376)
T ss_dssp SCSCCSSBCCEEEEEEEEESSCCBCSGGGSTTTSSSCCCEEEECTTSHHHHHHHHHHHHHHHTTTSSCCCSCGGGCCTTC
T ss_pred HHHHCCCCCEEEEEEHHHHCCCCCCHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCH
T ss_conf 87536798578854002304887166899998752286554245555699999999999986378221006877899501
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~lvna~~f~~~W~~~F~~~~t~~~~F~~~~~~~~~v~~m~~~~~~~~~~~~~l~~~vveLP~~~~~~sm~iilP~~~~ 240 (376)
T d1k9oi_ 161 RSVLVNAIYFKGSWKDKFVKERTMDRDFHVSKDKTIKVPTMIGKKDVRYADVPELDAKMIEMSYEGDQASMIIILPNQVD 240 (376)
T ss_dssp CEEEEEEEEEEBCBSSCCCGGGCEEEEECSSSSCCEEEEEEEEEEEEEEEEETTTTEEEEEEEBGGGSEEEEEEEESSTT
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCEEEEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCC
T ss_conf 45665515655422278883233513053279926999723421417887507798799996237993699999668776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~l~~~~~~l~~~~~~~~~~~~~~~~~v~v~lPkF~i~~~~~l~~~L~~lGl~~~F~~~~ad~s~~~~~~~~l~vs~v~q~ 320 (376)
T d1k9oi_ 241 GITALEQKLKDPKALSRAEERLYNTEVEITLPKFKIETTTDLKEVLSNMNIKKLFTPGAARLENLLKTKESLTVDAAIQK 320 (376)
T ss_dssp THHHHHHHTTSTTTTTTTTTSCEEEEEEEEEECEEEEEEEEHHHHHHTTTCCSTTSTTTSCBTTTBSSCCCCCCSEEEEE
T ss_pred CHHHHHHHHCCHHHHHHHHHHCCCEEEEEEEEEEEEEEEECHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE
T ss_conf 63578864225346899875151228999843589752212788765438754357652312356588998788736877
Q ss_pred -------------------------------------------------------C
Q ss_conf -------------------------------------------------------9
Q 000711 482 -------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------s 482 (1338)
=
T Consensus 321 ~~ievdE~G~~a~a~t~~~~~~~~~~~~~~f~~drPF~f~I~~~~~~lf~G~v~~P 376 (376)
T d1k9oi_ 321 AFIEVNEEGAEAAAANAFGIVPKSLILYPEVHIDRPFYFELKIDGIPMFNGKVIEP 376 (376)
T ss_dssp EEEEECSCBSSCSSSCCSSSEESCCCCCCEEECCSCEEEEEEESSSEEEEEEESCC
T ss_pred EEEEECCCCEEEECCCCEEEECCCCCCCCEEEEECCEEEEEEECCEEEEEEEECCC
T ss_conf 89999987116001432344116788897599648979999979969999994288
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=28317.82 Aligned_cols=1 Identities=0% Similarity=-1.856 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~iyld~a~~~~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~~~~~~ 80 (376)
T d1eg5a_ 1 MRVYFDNNATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKT 80 (376)
T ss_dssp CCEECBTTTCCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHC
T ss_conf 97988786316699999999999998748987654699999999999999999998098978099979878997766621
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~~~~id~~~l~~~i~~~t~lv~is~v~~~tG~~~~~~~ 160 (376)
T d1eg5a_ 81 VAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVED 160 (376)
T ss_dssp HHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHH
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCEECHHHHHHHCCCCCEEEEEECCCCCCCEEEEEHH
T ss_conf 44332235763223432220128999999866988999768988727789999864899608999777665412554124
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 i~~~~~~~~~~~~~~vD~~q~~g~~~~d~~~~~~D~~~~s~~K~~gp~G~~~l~~~~~~~~~p~~~g~~~~~~~~~~~~~ 240 (376)
T d1eg5a_ 161 VTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKGVPIRPLIHGGGQERGLRSGTQN 240 (376)
T ss_dssp HHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTSCTTCEEEEECTTSCCCCSBCSSCTTTTTBCSCCC
T ss_pred HHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCEECCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 44554311467504787531246545520004865000125434357886268852576658720189875445477664
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~vr~ 320 (376)
T d1eg5a_ 241 VPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVSFPNIRGSTLQNLLSGYGIYVST 320 (376)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEEEEECTTCCHHHHHHHHHHTTEECBC
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCEEEEC
T ss_conf 02456677775402210246666666543200012331011123433211256023225997999999988559908967
Q ss_pred -------------------------------------------------------C
Q ss_conf -------------------------------------------------------9
Q 000711 482 -------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------s 482 (1338)
=
T Consensus 321 G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~~iv~~l 376 (376)
T d1eg5a_ 321 SSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSFL 376 (376)
T ss_dssp ------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCHHCCCCCCHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 61103886206699997399834479889996589899999999999999999639
|
| >d2v3qa1 c.94.1.1 (A:1-376) PstS-like phosphate-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: PstS-like phosphate-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28317.19 Aligned_cols=1 Identities=0% Similarity=0.105 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~i~gaGat~p~p~~~~~~~~~~~~~~y~~~GSG~G~~~~~~g~~~~~~~~~~~tvdfa~sd~~l~~~E~~~~~~~~~~~~ 80 (376)
T d2v3qa1 1 DINGGGATLPQKLYLTPDVLTAGFAPYIGVGSGKGKIAFLENKYNQFGTDTTKNVHWAGSDSKLTATELATYAADKEPGW 80 (376)
T ss_dssp CBCEEECSTTHHHHTSTTTSCTTBCCCEECCHHHHHHHHHHTCGGGTCSCTTSCCCEEEESSCCCHHHHHHHHHHTHHHH
T ss_pred CCEEEEHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 93215222799999998763596789956576899999963886444556546771353477789999988774066777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~v~iPv~~~~Iai~~N~~~~~~l~Lt~~~L~~If~G~It~Wnd~~i~~p~~~I~vv~R~d~SGTt~~Ft~~L~~~~~~ 160 (376)
T d2v3qa1 81 GKLIQVPSVATSVAIPFRKAGANAVDLSVKELCGVFSGRIADWSGITGAGRSGPIQVVYRAESSGTTELFTRFLNAKCTT 160 (376)
T ss_dssp CCEEEEEEEEEECBCBBCCCCSSCCEECHHHHHHHHHTSCCBGGGSTTSCCCSBCEEEEESSCCHHHHHHHHHHHHHCCS
T ss_pred CCEEEEEEEEEEEEEEEECCCCHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCC
T ss_conf 86289747764479987347625543479999843337623001135457677854784489986078889988652755
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~g~~~~~~~~~~~~~~~~~~~~~a~gs~gv~~~v~~~~~~~gaIGY~~~~ya~~~~~~l~~~~~~~~~~~~~~~~~ 240 (376)
T d2v3qa1 161 EPGTFAVTTTFANSYSLGLTPLAGAVAATGSDGVMAALNDTTVAEGRITYISPDFAAPTLAGLDDATKVARVGKGVVNGV 240 (376)
T ss_dssp SSSCBCCCSCGGGTBTTCSTTSTTCEEESHHHHHHHHHHCTTSCSCEECCBCHHHHSSSGGGGGCTTTBCEECCEEETTE
T ss_pred CCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCHHHHHCCCCCCEEECC
T ss_conf 32234643102332245677677650003573087887540477765444430100022222103332024453000035
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~v~pt~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YPI~~~~y~~~~~~~~~~~~~~~vk~Fl 320 (376)
T d2v3qa1 241 AVEGKSPAAANVSAAISVVPLPAAADRGNPDVWVPVFGATTGGGVVAYPDSGYPILGFTNLIFSQCYANATQTGQVRDFF 320 (376)
T ss_dssp EECCBCCCTHHHHHHHHTCCCCCGGGTTCGGGGSCEEESSCBTTEEECCSSSCSCEEEEEEEEESCBSSHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHEEEECCCCCCHHHHHHHHHH
T ss_conf 66621245888997651144554344566532223334322001357888851112111100002368700159999999
Q ss_pred -------------------------------------------------------C
Q ss_conf -------------------------------------------------------9
Q 000711 482 -------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~l~~~~~gq~~~~~~GyvPLp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (376)
T d2v3qa1 321 TKHYGTSANNDAAIEANAFVPLPSNWKAAVRASFLTASNALSIGNTNVCNGKGRPQ 376 (376)
T ss_dssp HHHTCSSSSSHHHHHHTTCBCCCHHHHHHHHHHHTSTTSTTSTTCHHHHTTCCBCC
T ss_pred HHHHHCCCCHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 99860553257889978974399999999999986225420227864367788999
|
| >d1wu4a1 a.102.1.2 (A:6-381) Xylanase Y {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Cellulases catalytic domain domain: Xylanase Y species: Bacillus halodurans [TaxId: 86665]
Probab=100.00 E-value=0 Score=28316.38 Aligned_cols=1 Identities=0% Similarity=-0.127 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~g~~~~~~y~n~~~~~g~~q~~~~~k~~~~~~~~f~~~~~~~~y~~~~~~~~yv~d~~n~dv~SEGqgYGMl~Av~~~dr 80 (376)
T d1wu4a1 1 EGAFYTREYRNLFKEFGYSEAEIQERVKDTWEQLFGDNPETKIYYEVGDDLGYLLDTGNLDVRTEGMSYGMMMAVQMDRK 80 (376)
T ss_dssp CCHHHHCCCCCHHHHTTCCHHHHHHHHHHHHHHHHSSCC--CCEEEETTTEEEECBTTTTBEEHHHHHHHHHHHHHTTCH
T ss_pred CCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCH
T ss_conf 99764675552888828899999999999999981689766189971798558766799985556799999999980999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~FD~lw~wt~~~l~~~d~~~~~L~aW~~~~~g~v~d~n~AtDgDl~iA~ALl~A~~~Wg~~~~~~~~Y~~~A~~il~~i 160 (376)
T d1wu4a1 81 DIFDRIWNWTMKNMYMTEGVHAGYFAWSCQPDGTKNSWGPAPDGEEYFALALFFASHRWGDGDEQPFNYSEQARKLLHTC 160 (376)
T ss_dssp HHHHHHHHHHHHHTBCCSSTTTTSBCSEECTTSCBSCSCCCHHHHHHHHHHHHHHHHHHCCCSSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999985367777666715336799997889988767999999999999874887533356999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~nPSY~~P~~~~~fa~~a~~~~~~~W~~~~~~s~~ll~~~~~~~tGL~PDw~ 240 (376)
T d1wu4a1 161 VHNGEGGPGHPMWNRDNKLIKFIPEVEFSDPSYHLPHFYELFSLWANEEDRVFWKEAAEASREYLKIACHPETGLAPEYA 240 (376)
T ss_dssp HHTTSSSSCCCSBCTTTCCBCSSTTCSEECGGGCCHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHSCTTTCCCCSSE
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCE
T ss_conf 98546788865103674455558887502801037899999998613477457999999999999971147879998425
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~dg~~~~~~~~~~~~yDA~Rvpl~ia~d~~w~g~~~~~~~~~~~~~~f~~~~~~~~~~~y~~dG~~~~~~~~~~~g~~a 320 (376)
T d1wu4a1 241 YYDGTPNDEKGYGHFFSDSYRVAANIGLDAEWFGGSEWSAEEINKIQAFFADKEPEDYRRYKIDGEPFEEKSLHPVGLIA 320 (376)
T ss_dssp ETTSSBCCTTSCSSBSGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCCGGGCEEECTTSCEEEEECSCHHHHHH
T ss_pred EECCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHH
T ss_conf 35895378778997750199999999977512575356799999999998634666688553368414677888679999
Q ss_pred -------------------------------------------------------C
Q ss_conf -------------------------------------------------------9
Q 000711 482 -------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~a~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~YY~~~L~Llall~lsG~~r~~~p 376 (376)
T d1wu4a1 321 TNAMGSLASVDGPYAKANVDLFWNTPVRTGNRRYYDNCLYLFAMLALSGNFKIWFP 376 (376)
T ss_dssp HHHHGGGGCTTCTTHHHHHHHHHTSCCCCSTTHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 99999997279716899999987234788888878999999999998298444179
|
| >d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Polygalacturonase species: Erwinia carotovora, subsp. carotovora [TaxId: 554]
Probab=100.00 E-value=0 Score=28313.77 Aligned_cols=1 Identities=0% Similarity=0.172 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~T~aIq~AIdac~~Gg~V~iP~G~~~vyltg~i~LkSnv~L~l~~ga~L~~s~d~~ 80 (376)
T d1bhea_ 1 SDSRTVSEPKTPSSCTTLKADSSTATSTIQKALNNCDQGKAVRLSAGSTSVFLSGPLSLPSGVSLLIDKGVTLRAVNNAK 80 (376)
T ss_dssp CCSSCCCCCCCCCEEEEEECCSSBCHHHHHHHHTTCCTTCEEEEECSSSSEEEESCEECCTTCEEEECTTCEEEECSCSG
T ss_pred CCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCEEEEECEEECCCCEEEEECCEEEEECCCHH
T ss_conf 98654578989975686789997369999999987779999999699745699804897888789991997999738979
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~y~~~~~~~~~~~~~~~~~~~~i~~~~~~Ni~ItG~G~IDG~G~~~~~~~~~~~~~~~~~~~~~~~~~~rP~~i~~~~~~ 160 (376)
T d1bhea_ 81 SFENAPSSCGVVDKNGKGCDAFITAVSTTNSGIYGPGTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTPRLIQINKSK 160 (376)
T ss_dssp GGBSSTTCSSCEESCSCCBCCSEEEESCBSCEEECSSEEECCTTSCCSSSSSCTTHHHHHHHHHTCEECCCCSEEEESCE
T ss_pred HCCCCCCEEEEEECCCCCCCEEEEECCCCEEEEEECCEEECCCCEEECCCCCCHHCCCCCCCCCCCCCCCCEEEEEEECC
T ss_conf 96566630236751576541268824863079972768813344162277641000123444466777897699999115
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 nv~i~~iti~ns~~~~~~~~~~~~v~i~n~~I~~~~~~~NtDGidi~~s~nv~I~n~~i~~gDD~i~~ks~~~~~~~~ni 240 (376)
T d1bhea_ 161 NFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKGRAETRNI 240 (376)
T ss_dssp EEEEEEEEEECCSSCSEEEESCEEEEEEEEEEECCTTCSSCCSEEEESCEEEEEESCEEECSSCSEEEEECTTSCCEEEE
T ss_pred CEEEEEEEEECCCCEEEEEECCCEEEEEEEECCCCCCCCCCCEEECCCCCEEEEEECEEECCCCCEEEECCCCCCCCCEE
T ss_conf 68997039955993699996885599996750588657776340025645099982533048981566046677774459
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~i~n~~~~~~~g~~iGs~~~~v~nv~i~n~~~~~~~~g~~Iks~~~~gG~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~ 320 (376)
T d1bhea_ 241 SILHNDFGTGHGMSIGSETMGVYNVTVDDLKMNGTTNGLRIKSDKSAAGVVNGVRYSNVVMKNVAKPIVIDTVYEKKEGS 320 (376)
T ss_dssp EEEEEEECSSSCEEEEEEESSEEEEEEEEEEEESCSEEEEEECCTTTCCEEEEEEEEEEEEESCSEEEEEETTSSCCCCC
T ss_pred EEEEEEEECCCCCEECCCCCCEEEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEEEEEEEECCCCCEEEEEECCCCCCC
T ss_conf 99963896688730645668778899993258688704789825887607989999968993667448998144788888
Q ss_pred -------------------------------------------------------C
Q ss_conf -------------------------------------------------------9
Q 000711 482 -------------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~i~nIt~~Ni~~~~~~~~~l~g~~~~~~~~v~~~nv~i~~~~~~~~~nv~~k~ 376 (376)
T d1bhea_ 321 NVPDWSDITFKDVTSETKGVVVLNGENAKKPIEVTMKNVKLTSDSTWQIKNVNVKK 376 (376)
T ss_dssp CCCEEEEEEEEEEEECSCCEEEEECTTCSSCEEEEEEEEECCTTCEEEEESEEEEC
T ss_pred CCCEEEEEEEEEEEEECCEEEEEECCCCCCCEEEEEEEEEEECCCCCEEEEEEECC
T ss_conf 79779518999079935325999868888823699984899759888788055329
|
| >d2fug41 e.18.1.2 (4:35-409) NADH-quinone oxidoreductase chain 4, Nqo4 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: HydB/Nqo4-like superfamily: HydB/Nqo4-like family: Nqo4-like domain: NADH-quinone oxidoreductase chain 4, Nqo4 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=28246.93 Aligned_cols=1 Identities=0% Similarity=-0.593 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 p~~hG~~r~~~~v~ge~V~~a~~~ig~~~RGfEk~l~Gr~~~da~~i~~RICGIC~~aH~~A~~~AlE~a~gv~~p~~a~ 80 (375)
T d2fug41 1 PSTHGVLRLMVTLSGEEVLEVVPHIGYLHTGFEKTMEHRTYLQNITYTPRMDYLHSFAHDLAYALAVEKLLGAVVPPRAE 80 (375)
T ss_dssp CEEECSSSCEEEECCSSSCCEEEECCTTCCCHHHHGGGSCHHHHHHHGGGTTSSSHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred CCCCCEEEEEEEECCCEEEEEEEEECCCCHHHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 99885289999976988999898306652689998749996882212063111038799999999999991998899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~lR~l~~~~e~i~sH~l~~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~~G~~~h~~~~~~gG~~~~~~~~~~~~~~~~~ 160 (375)
T d2fug41 81 TIRVILNELSRLASHLVFLGTGLLDLGALTPFFYAFRERETILDLFEWVTGQRFHHNYIRIGGVKEDLPEEFVPELKKLL 160 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTSSSSSCCCEETTEESSCCCTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCEECCCEEECCCHHHHHHHHHHH
T ss_conf 99999999988767999999834520024388899999899999999846865520521202302279867889999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 240 (375)
T d2fug41 161 EVLPHRIDEYEALFAESPIFYERARGVGVIPPEVAIDLGLTGGSLRASGVNYDVRKAYPYSGYETYTFDVPLGERGDVFD 240 (375)
T ss_dssp TTTTTTTHHHHHHHSSCSCCTTSCSCCCCSSSCSTTTTTTCCSSCCSSCCTTTTTCCSSCCCC-----CCCCCCSSSSHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 76088778898740367500002577533451023315765554555642133120067554556565534424776432
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~g~vEApRG~L~ 320 (375)
T d2fug41 241 RMLVRIREMRESVKIIKQALERLEPGPVRDPNPQITPPPRHLLETSMEAVIYHFKHYTEGFHPPKGEVYVPTESARGELG 320 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCSCCBCCCTTTSCCCTTCTTTCTTHHHHHHHHHHSCCCCCSCCCCCCBCCSSSCBC
T ss_pred CCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCEEEE
T ss_conf 10213444421468999899748898744344110335699997554541013444566776899579999974886799
Q ss_pred ------------------------------------------------------C
Q ss_conf ------------------------------------------------------9
Q 000711 482 ------------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------------s 482 (1338)
-
T Consensus 321 H~~~~d~~g~i~~~~ii~PT~~N~~~~e~al~G~~i~D~~~iirSfDpC~sC~dr 375 (375)
T d2fug41 321 YYIVSDGGSMPYRVKVRAPSFVNLQSLPYACKGEQVPDMVAIIASLDPVMGDVDR 375 (375)
T ss_dssp EEEECCSSSSCSEEEECCSHHHHTTTHHHHTTTSCGGGTTHHHHTTCCCHHHHHC
T ss_pred EEEEECCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 9999989981899999898877999999996799167899998567976447898
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=28245.65 Aligned_cols=1 Identities=100% Similarity=-0.360 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~r~~~~~~~~~~~~~~~a~~~~~~G~~vI~l~~G~p~~~~p~~i~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~ 80 (375)
T d1o4sa_ 1 VSRRISEIPISKTMELDAKAKALIKKGEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGE 80 (375)
T ss_dssp CCHHHHHSCCCSSHHHHHHHHHHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 94546548977899999999999977998589989588997889999999999855876889986789999999864332
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (375)
T d1o4sa_ 81 RYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVG 160 (375)
T ss_dssp HHTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCT
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 15655433323346728999999999981899989982586543102321122222233344332356136777775235
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~ 240 (375)
T d1o4sa_ 161 KTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGW 240 (375)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGG
T ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHCCCCCC
T ss_conf 76379981899885577999999999986887098124674003001333332112355778978999405142058866
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~g~~~~~p~gg~f~~~~~ 320 (375)
T d1o4sa_ 241 RVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVDNSYMVQTFKERKNFVVERLKKMGVKFVEPEGAFYLFFKV 320 (375)
T ss_dssp CCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSBSSEEEEEC
T ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEEC
T ss_conf 44543233331012232212344333320002334321121023678889999999987874495685689407999979
Q ss_pred ------------------------------------------------------C
Q ss_conf ------------------------------------------------------9
Q 000711 482 ------------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------------s 482 (1338)
+
T Consensus 321 ~~~~~~~~~~ll~~~gV~v~pG~~F~~~g~iRis~~~~~e~l~~al~rl~~~l~~ 375 (375)
T d1o4sa_ 321 RGDDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFATSIERLTEALDRIEDFLNS 375 (375)
T ss_dssp SSCHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCC
T ss_conf 9997999999998599999976115899969999728999999999999999659
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=28244.21 Aligned_cols=1 Identities=0% Similarity=-1.523 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~i~EG~~~i~vp~~~~~~~~~vFYNp~q~~NRDlsvl~~~~~~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~ 80 (375)
T d2dula1 1 LIEVQEGKAKILIPKAESIYDSPVFYNPRMALNRDIVVVLLNILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISED 80 (375)
T ss_dssp CEEEEETTEEEEEC--------CCCCCGGGHHHHHHHHHHHHHHCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHH
T ss_pred CEEEEECCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCCEEEEECCCHH
T ss_conf 94899586899941787778788242877764107999999973998799868774099999998589978998259989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~~~~~fDvIDiDPfGs~~pfldsAi~a~~~~Gll~v 160 (375)
T d2dula1 81 AYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAERHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGV 160 (375)
T ss_dssp HHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHSTTCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 99999999986375432211243323554336741004556567515767744578888817999999997044877999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 TaTD~a~L~G~~~~~~~r~Yg~~~~~~~~~~E~glRill~~i~r~Aa~~~~~i~PllS~~~~~y~Rv~vrv~~~~~~~~~ 240 (375)
T d2dula1 161 TATDGAPLCGAHPRACLRKYLAVPLRGELCHEVGTRILVGVIARYAAKYDLGIDVILAYYKDHYFRAFVKLKDGARKGDE 240 (375)
T ss_dssp EECCHHHHTTSSHHHHHHHHSSBCCCSTTHHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEETTEEEEEEEEEESHHHHHH
T ss_pred EECCCHHHCCCCCHHHHHHHCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEECCHHHHHH
T ss_conf 93686120479917899972876137866501889999999999987429805999999824607999999137677887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~g~~~~C~~c~~~~~~~~~~~~~~~~~GPlW~G~L~d~efl~~~~~~~~~~~~~~~~~~~~ll~~i~eE~~~P~~y 320 (375)
T d2dula1 241 TLEKLGYIYFDDKTGKFELEQGFLPTRPNAYGPVWLGPLKDEKIVSKMVKEAESLSLARKKQALKLLKMIDQELDIPLFY 320 (375)
T ss_dssp HHTTEEEEEECTTTCCEEEEESSSCCSSSCEEEEECSCSBCHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHSCCSSCCE
T ss_pred HHHHCCCEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 88744817871898877775588999787867883673369999999998754057540569999999998614998298
Q ss_pred ------------------------------------------------------C
Q ss_conf ------------------------------------------------------9
Q 000711 482 ------------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------------s 482 (1338)
-
T Consensus 321 ~l~~la~~lk~~~P~~~~~~~aL~~~Gy~asrtH~~p~~iKTdAp~~~i~~i~r~ 375 (375)
T d2dula1 321 DTHAIGRRLKIETKKVEEIISALREQGYEATRTHFSPTGIKTSAPYEVFIETIKR 375 (375)
T ss_dssp EHHHHHHHHTCCBCCHHHHHHHHHHTTCCEEEETTEEEEEEESSCHHHHHHHHBC
T ss_pred CHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCEECCCCHHHHHHHHHC
T ss_conf 5799998739999999999999997898899657899977137999999999709
|
| >d1ih7a1 c.55.3.5 (A:1-375) Exonuclease domain of family B DNA polymerases {Bacteriophage RB69 [TaxId: 12353]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: DnaQ-like 3'-5' exonuclease domain: Exonuclease domain of family B DNA polymerases species: Bacteriophage RB69 [TaxId: 12353]
Probab=100.00 E-value=0 Score=28243.96 Aligned_cols=1 Identities=0% Similarity=-1.091 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 m~~fyt~v~~~gn~i~~rg~d~nG~r~~~~~~f~Py~Yv~~~~~~~t~~ksl~G~~v~~v~f~s~~e~r~~~k~~~~~~~ 80 (375)
T d1ih7a1 1 MKEFYLTVEQIGDSIFERYIDSNGRERTREVEYKPSLFAHCPESQATKYFDIYGKPCTRKLFANMRDASQWIKRMEDIGL 80 (375)
T ss_dssp CCCEEEEEEEETTEEEEEEECTTSCEEEEEECCCCEEEEECCTTSCCSCEETTSCBEEEEECSSHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCEEEECCEEEEEEEECCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCC
T ss_conf 98644022799999999999679989999954730699988999864534148817666746988999999997155543
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~v~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~DIE~~~~~~~p~~~~~~~~i~~I~~~~~~~~~~~~~~~~~~~~~~~~ 160 (375)
T d1ih7a1 81 EALGMDDFKLAYLSDTYNYEIKYDHTKIRVANFDIEVTSPDGFPEPSQAKHPIDAITHYDSIDDRFYVFDLLNSPYGNVE 160 (375)
T ss_dssp CCBSCCCHHHHHHHHHTCSCCCCCGGGSCEEEEEEEECCSSSCCCTTTCCSCEEEEEEEETTTTEEEEEEECCCTTCCCC
T ss_pred EECCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCC
T ss_conf 11256641201012357654566754220455788970576656864232100011246615880999996377756654
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~sE~eLL~~F~~~~~~~dPDiitGwN~~~FD~pYL~~R~~~~~~~~~~~ 240 (375)
T d1ih7a1 161 EWSIEIAAKLQEQGGDEVPSEIIDKIIYMPFDNEKELLMEYLNFWQQKTPVILTGWNVESFDIPYVYNRIKNIFGESTAK 240 (375)
T ss_dssp CCCHHHHHSCTTTTCCCCCHHHHTTEEEEEESSHHHHHHHHHHHHHHSCCSEEEETTTTTTHHHHHHHHHHHHHCHHHHG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCHHHHH
T ss_conf 32212233311124555655567985999829999999999999876498899871777887099999998640100233
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~D~~~~~~~~~~~~~~s~~l~~v~~~~l~~~K~~~~~~~~~~~~~d~~~~ 320 (375)
T d1ih7a1 241 RLSPHRKTRVKVIENMYGSREIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEFELNVGKLKYDGPISKLRESNHQRY 320 (375)
T ss_dssp GGSTTSCEEEEEEECSSCEEEEEEETTCEEEEHHHHHHHHSSCCCSCCSHHHHHHHHTCCCCCCCSSCGGGHHHHHHHHH
T ss_pred HHHHCCCCCEEEEEEECCCCCEECCCCCEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCHHHH
T ss_conf 44423785079998512554011035640002899998753023210005678888751466557555999987494686
Q ss_pred ------------------------------------------------------C
Q ss_conf ------------------------------------------------------9
Q 000711 482 ------------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------------s 482 (1338)
=
T Consensus 321 ~~Y~~~D~~L~~~L~~kl~~i~~~~~~a~~~~v~~~~v~~q~~~~~~li~~~~~~ 375 (375)
T d1ih7a1 321 ISYNIIDVYRVLQIDAKRQFINLSLDMGYYAKIQIQSVFSPIKTWDAIIFNSLKE 375 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSCGGGGGCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 6520998999999999872899999999987959899738999999999999529
|
| >d1kbla3 d.142.1.5 (A:2-376) Pyruvate phosphate dikinase, N-terminal domain {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Pyruvate phosphate dikinase, N-terminal domain domain: Pyruvate phosphate dikinase, N-terminal domain species: Clostridium symbiosum [TaxId: 1512]
Probab=100.00 E-value=0 Score=28246.71 Aligned_cols=1 Identities=0% Similarity=-0.526 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~k~v~~f~e~~~~d~~lvGGK~AnLgel~~~G~pVP~GFviTt~Ay~~Fl~~n~~~~~~l~~~i~~~l~~l~~~~~~~~~ 80 (375)
T d1kbla3 1 AKWVYKFEEGNASMRNLLGGKGCNLAEMTILGMPIPQGFTVTTEACTEYYNSGKQITQEIQDQIFEAITWLEELNGKKFG 80 (375)
T ss_dssp CCCEEEGGGCCGGGHHHHHHHHHHHHHHHHTTCCCCCEEEECHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHTSCBT
T ss_pred CCEEEECCCCCCHHHHCCCHHHHHHHHHHHCCCCCCCCEEECHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 97789887799023643828899899999783998998885099999999826657487999999999866643275446
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 160 (375)
T d1kbla3 81 DTEDPLLVSVRSGARASMPGMMDTILNLGLNDVAVEGFAKKTGNPRFAYDSYRRFIQMYSDVVMEVPKSHFEKIIDAMKE 160 (375)
T ss_dssp CSSSCBCEEEEEECSSCCTTSSCEEEEETCCTTHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 54320121010013432100014676630350456667651343233211310255542000011015678888876653
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~q~~~~~~a~gv~~t~~~~~~~~~~~~i~~~~glg~~vv~ 240 (375)
T d1kbla3 161 EKGVHFDTDLTADDLKELAEKFKAVYKEAMNGEEFPQEPKDQLMGAVKAVFRSWDNPRAIVYRRMNDIPGDWGTAVNVQT 240 (375)
T ss_dssp HTCCCSGGGCCHHHHHHHHHHHHHHHHTTTTTCCCCCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCCGGGCCEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCEEECCCCCCCCCEEEC
T ss_conf 04337777767888999999999999875148865553024445530146773146655554420341466666630102
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~eLa~~a~~iE~~yG~PqD 320 (375)
T d1kbla3 241 MVFGNKGETSGTGVAFTRNPSTGEKGIYGEYLINAQGEDVVAGVRTPQPITQLENDMPDCYKQFMDLAMKLEKHFRDMQD 320 (375)
T ss_dssp CCCTTSSTTCEEEEEEEECTTTCCEEEEEEEEESCCHHHHHHTSSCCEEGGGHHHHCHHHHHHHHHHHHHHHHHHTSCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEECCCCCCCCHHCCCHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 21057774226641245675444321122000013466642431226654431321808999999999999998199614
Q ss_pred ------------------------------------------------------C
Q ss_conf ------------------------------------------------------9
Q 000711 482 ------------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------------s 482 (1338)
-
T Consensus 321 IEWAi~dG~l~ILQaRPv~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T d1kbla3 321 MEFTIEEGKLYFLQTRNGKRTAPAALQIACDLVDEGMITEEEAVVRIEAKSLDQL 375 (375)
T ss_dssp EEEEEETTEEEEEEEEECCCCHHHHHHHHHHHHHTTSSCHHHHHHHSCGGGGGGG
T ss_pred EEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHCCC
T ss_conf 6999999989999766788657869999999998699799999872794211229
|
| >d1txka2 b.30.5.9 (A:23-396) Glucans biosynthesis protein G (MdoG, OpgG), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Supersandwich superfamily: Galactose mutarotase-like family: MdoG-like domain: Glucans biosynthesis protein G (MdoG, OpgG), N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=28179.67 Aligned_cols=1 Identities=0% Similarity=-1.358 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 F~f~~l~~~Ar~lA~~py~~p~~~lP~~l~~L~Yd~yr~Irf~~~~alW~~~~~~f~v~~fh~G~~f~~pV~i~~V~~g~ 80 (374)
T d1txka2 1 FSIDDVAKQAQSLAGKGYETPKSNLPSVFRDMKYADYQQIQFNHDKAYWNNLKTPFKLEFYHQGMYFDTPVKINEVTATA 80 (374)
T ss_dssp CCHHHHHHHHHHHHTSCCCCCCCCCCCC----CHHHHTTCEECGGGCBTTTSSCSCEEEEEECBTTBCSCBEEEEECSSC
T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCE
T ss_conf 98799999999985189889876689878729998971636486521105799998787627876679877999970995
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~i~fd~~~F~y~~~~~~~~~~~~~GfAGFRl~~pln~~~~~de~~~FlGASYFRavg~g~~YGlSARGLAIdTa~~~g 160 (374)
T d1txka2 81 VKRIKYSPDYFTFGDVQHDKDTVKDLGFAGFKVLYPINSKDKNDEIVSMLGASYFRVIGAGQVYGLSARGLAIDTALPSG 160 (374)
T ss_dssp EEECCCCGGGEECTTSCCCTTTSTTCCEEEEEEEECSSCTTCCEEEEEEESTTEEEECCTTCCCCCEEESCEESTTCTTC
T ss_pred EEEEECCHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCHHHEEEECCCCCCCCCHHHEECCCCCCCC
T ss_conf 68810188996678877784556678730599963467887443167771620224534897366311010005799987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 EEFP~F~~FWle~P~~~~~~~~vyALLDspSvtGAYrF~i~PG~~t~~dV~a~Lf~R~~v~~lGiAPLTSMf~~ge~~~~ 240 (374)
T d1txka2 161 EEFPRFKEFWIERPKPTDKRLTIYALLDSPRATGAYKFVVMPGRDTVVDVQSKIYLRDKVGKLGVAPLTSMFLFGPNQPS 240 (374)
T ss_dssp CBCCEEEEEEEECCCTTCCCEEEEEEEEETTEEEEEEEEEECSSSEEEEEEEEEEESSCCSCEEEEEEEECEEEBTTBCC
T ss_pred CCCCCCEEEEEECCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCEEEEEEEEEEECCCCCCCCCCCHHHHHCCCCCCCC
T ss_conf 67987748996657899976999999239741007999997599889999889980676121350211365306898899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~dD~RPeVHDSDGL~i~~g~GE~iWRPL~NP~~l~~S~f~d~~p~GFGLlQRdR~F~~YqD~ea~Ye~RPSlWVeP~gd 320 (374)
T d1txka2 241 PANNYRPELHDSNGLSIHAGNGEWIWRPLNNPKHLAVSSFSMENPQGFGLLQRGRDFSRFEDLDDRYDLRPSAWVTPKGE 320 (374)
T ss_dssp SSCCSCSCEESCCEEEEECTTSCEEEEECCCCSSCEEEEEEEESCCEEEEECCCCCGGGTCCTTTCGGGCCEEEEEESSC
T ss_pred CCCCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCEEEEEECCCCCCCCCEECCCCHHHHCCCHHHHCCCCEEEEEECCC
T ss_conf 88987875525664379737996782368898862175675589863233613777232306413233487378876676
Q ss_pred -----------------------------------------------------C
Q ss_conf -----------------------------------------------------9
Q 000711 482 -----------------------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------------------s 482 (1338)
+
T Consensus 321 WG~G~V~LvEIPT~~E~~DNIVAfW~P~~~~~~G~~~~f~Yrl~W~~~~p~~h~ 374 (374)
T d1txka2 321 WGKGSVELVEIPTNDETNDNIVAYWTPDQLPEPGKEMNFKYTITFSRDEDKLHA 374 (374)
T ss_dssp CCEEEEEEEECCCSCTTSCCEEEEEEESCCCCTTCEEEEEEEEEEESCGGGGSC
T ss_pred CCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCC
T ss_conf 778679999768997243658999767887899996989989974789876679
|
| >d1ioma_ a.103.1.1 (A:) Citrate synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Citrate synthase superfamily: Citrate synthase family: Citrate synthase domain: Citrate synthase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=28170.78 Aligned_cols=1 Identities=0% Similarity=-1.157 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 v~rGL~Gv~v~eS~Is~IDg~~G~L~YRG~~i~dLa~~~sfEEVa~LL~~G~LP~~~el~~f~~~l~~~~~lp~~~~~~l 80 (374)
T d1ioma_ 1 VARGLEGVLFTESRMCYIDGQQGKLYYYGIPIQELAEKSSFEETTFLLLHGRLPRRQELEEFSAALARRRALPAHLLESF 80 (374)
T ss_dssp CCGGGTTCCCSCCSSEEEETTTTEEEETTEEHHHHHHHCCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCSCCHHHHHHH
T ss_pred CCCCCCCCEEEEEECEEEECCCCEEEECCEEHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99888998485655636748988899988559998703999999999978969799999999999997047988898999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~p~~~~pm~~l~~~vs~l~~~~~~~~~~~~~~~~~~~~~lia~~~~i~a~~~~~~~g~~~~~p~~~~s~a~n~l~m~~ 160 (374)
T d1ioma_ 81 KRYPVSAHPMSFLRTAVSEFGMLDPTEGDISREALYEKGLDLIAKFATIVAANKRLKEGKEPIPPREDLSHAANFLYMAN 160 (374)
T ss_dssp TTSCTTSCHHHHHHHHHHHHHHTCTTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSCHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 85343421157777766652125752223310689999998624305788899998469877788603679999877623
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 g~~p~~~~~~~l~~~lvl~aDHg~n~St~aaR~~aSt~~d~~~av~agl~al~GplhGga~~~~~~~l~e~~~~~~~~~~ 240 (374)
T d1ioma_ 161 GVEPSPEQARLMDAALILHAEHGFNASTFTAIAAFSTETDLYSAITAAVASLKGPRHGGANEAVMRMIQEIGTPERAREW 240 (374)
T ss_dssp SSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHEEEECCCCCCCCHHHEEEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHH
T ss_conf 89999899999875613452588765122422554058747788888887337866786528999999850675354999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 v~~~l~~~~~i~GfGH~vy~~~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~pNvd~~~~~l~~~l 320 (374)
T d1ioma_ 241 VREKLAKKERIMGMGHRVYKAFDPRAGVLEKLARLVAEKHGHSKEYQILKIVEEEAGKVLNPRGIYPNVDFYSGVVYSDL 320 (374)
T ss_dssp HHHHHHTTCCCTTBSCSSCSSCCTTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTTCCBCHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC
T ss_conf 99998678877776764333553237999999998776427722789999998432430266898878689999999984
Q ss_pred -----------------------------------------------------C
Q ss_conf -----------------------------------------------------9
Q 000711 482 -----------------------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------------------s 482 (1338)
-
T Consensus 321 Gip~~~~~~lf~i~R~~Gw~AH~~E~~~~~~~l~RP~~~Y~G~~~r~~~p~~~R 374 (374)
T d1ioma_ 321 GFSLEFFTPIFAVARISGWVGHILEYQELDNRLLRPGAKYVGELDVPYVPLEAR 374 (374)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCCSCSSCCCCCGGGC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 988565559999999999999999998557985277540069999988676669
|
| >d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NagB/RpiA/CoA transferase-like superfamily: NagB/RpiA/CoA transferase-like family: IF2B-like domain: Initiation factor 2b species: Leishmania major [TaxId: 5664]
Probab=100.00 E-value=0 Score=28169.59 Aligned_cols=1 Identities=0% Similarity=-0.793 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~l~si~~~~~~v~ilDQ~~LP~~~~~~~~~t~~~v~~AIk~M~VRGAPaIgvaaA~glala~~~~~~~~~~~s 80 (374)
T d2a0ua1 1 MSKPHHATLESIKYTPGSLRLLDQRKLPLETVFDDVLTVEDIWSAIKEMRVRGAPAIAVSAALGIAVATQRKAANGELKS 80 (374)
T ss_dssp CCCCSSCCCCSEEEETTEEEEECTTTTTTCCCEEEECSHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CCCCCCCCEEEEEEECCEEEEEECCCCCCCEEEEEECCHHHHHHHHHCCEECCCCHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 99887895016999699999985788998179999699999998856370259429999999999999985222753001
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~el~~~L~~a~~~L~~sRPTAVNL~nAv~rv~~~i~~~~~~~s~~e~~~~ll~~A~~i~~eD~~~n~~Ig~~Ga~li~e 160 (374)
T d2a0ua1 81 GREVQTFLLTSCDFVMTSRPTAVNLFNCLRDLKAQVDKLDPTKAAAEVAQAFVELAEAVYTNDVAFNEGIMRHGAAHILA 160 (374)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSCSHHHHHHHHHHHHHHHSCTTSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 79999999999999985597542256899999999864287778999999999999999999999999999978999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~ilThcn~g~Lat~~~gtal~~i~~a~~~gk~~~V~v~EtRP~~qG~rlta~~L~~~gi~~t~i~Dsa~~ 240 (374)
T d2a0ua1 161 AAKAEGRDKVSILTICNTGALATSRYGTALGVVRQLFYDGKLERVYACETRPWNQGARLTVYECVQEDIPCTLICDGAAS 240 (374)
T ss_dssp HHHHTTCSSEEEEECSCCSTTTSSSSCSHHHHHHHHHHTTCEEEEEEECCTTTTHHHHTHHHHHHHTTCCEEEECGGGHH
T ss_pred HHHHCCCCCCEEEEECCCCCEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEECCCHH
T ss_conf 88621788732676416753375113224677678997698617998046433464689999998616771899545256
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~m~~~~v~~VivGad~v~~nG~v~nkiGT~~~A~~A~~~~vP~~v~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~ 320 (374)
T d2a0ua1 241 SLMLNRKIDAVVVGADRICQNGDTANKIGTYNLAVSAKFHGVKLYVAAPTTTLDVKTASGNHVEIEEREPTEITTNLVTK 320 (374)
T ss_dssp HHHHHSCCCEEEECCSEECTTCCEEEETTHHHHHHHHHHTTCCEEEECCGGGBCTTCCSGGGSCCCBCCTHHHHBCTTTC
T ss_pred HHHHCCCEEEEEECCEEEEECCCEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC
T ss_conf 66205642589852318984697886246499999999749988999115642767799775646678967734334566
Q ss_pred -----------------------------------------------------C
Q ss_conf -----------------------------------------------------9
Q 000711 482 -----------------------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------------------s 482 (1338)
+
T Consensus 321 ~~~~~~~~~~~v~np~fD~tP~~lIt~~iiTe~G~~~P~~~~~~~~~~~~~~~~ 374 (374)
T d2a0ua1 321 QRVVADGPHLSIWNPVFDITPSELITGGIITEKGVQAPAASAPYYDIASIIAQA 374 (374)
T ss_dssp CBCSCCCTTEEECCBSEEEECGGGCCSEEECSSCEECCCSSSSCCCHHHHHHCC
T ss_pred CEECCCCCCCCEECCCCCCCCHHHCCCEEECCCCCCCCCCCCCCCCHHHHHHCC
T ss_conf 120257888602486831789699499788889861655467721479896239
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=100.00 E-value=0 Score=28167.21 Aligned_cols=1 Identities=100% Similarity=2.231 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
|
T Consensus 1 ~~e~~~~~~~l~~~~~~~~G~~~~~fE~~~~~~~~~~~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a~~~~~~~ 80 (374)
T d1o69a_ 1 GNELKYIEEVFKSNYIAPLGEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICY 80 (374)
T ss_dssp CCHHHHHHHHHHHTTTSCTTHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHHHH
T ss_pred CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHH
T ss_conf 93899999999639807899899999999999978295999678799999999986988839999499661743799843
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~g~~pv~~Di~~~~~~~~~~~~~~~~~~~~~~~aii~~~~~G~~~d~~~i~~~~~~~~i~vIED~a~a~g~~~~~~~~G~ 160 (374)
T d1o69a_ 81 LKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTHLYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGT 160 (374)
T ss_dssp TTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEECGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTS
T ss_pred CCCEEEECCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCEECCEECCC
T ss_conf 44505734665321012123342100001233201111133310336888987651694410222342145678840688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~gd~~~fSf~~~K~l~tgeGG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G~N~rm~ei~Aaig~~qL~~l~~~i~~ 240 (374)
T d1o69a_ 161 FGEFGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLK 240 (374)
T ss_dssp SSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHHHHHHH
T ss_pred CCCEEEEECCCCCCCCCCCCEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCH
T ss_conf 77557894257646534665222133689998530222233333333333458864244624566667777665431004
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 r~~i~~~y~~~L~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~gI~~r~~ 320 (374)
T d1o69a_ 241 KREIYEWYKEFLGEYFSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPL 320 (374)
T ss_dssp HHHHHHHHHHHHTTTEECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCC
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEEEEECCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 67899998864024323333456787773140233034433224310000000010001210999999999879987873
Q ss_pred -----------------------------------------------------C
Q ss_conf -----------------------------------------------------9
Q 000711 482 -----------------------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------------------s 482 (1338)
=
T Consensus 321 y~pl~~~~~~~~~~~~~~pna~~~~~~~i~LP~~~~lt~~di~~I~~~I~~~lk 374 (374)
T d1o69a_ 321 WKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIK 374 (374)
T ss_dssp CCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHCHHHHCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 854342966534787899899999839898969887799999999999999979
|
| >d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Hect, E3 ligase catalytic domain superfamily: Hect, E3 ligase catalytic domain family: Hect, E3 ligase catalytic domain domain: WW domain-containing protein 1, WWP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28167.14 Aligned_cols=1 Identities=0% Similarity=-0.393 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~f~~~~~~~~~~~~~~i~V~R~~l~~d~~~~l~~~~~~~l~~~l~V~F~gE~g~D~GG~~rEff~~l~~el 80 (374)
T d1nd7a_ 1 HMGFRWKLAHFRYLCQSNALPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRGEEGLDYGGLAREWFFLLSHEV 80 (374)
T ss_dssp CCTHHHHHHHHHHHHHHTCCSSEEEEEECTTTHHHHHHHHHHTSCGGGGGSEEEEEETTTCCCCCTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHCCHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 96378999999988761689885599976565899999999716989847876999789874478711999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~p~~~lf~~~~~~~~~~~~~p~~~~~~~~~~~f~~lG~lig~al~~~~~~~~~f~~~f~k~Llg~~~t~~DL~~iD~~~ 160 (374)
T d1nd7a_ 81 LNPMYCLFEYAGKNNYCLQINPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEF 160 (374)
T ss_dssp TCGGGSSEEESSSSSCCEEECGGGGGSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCHHHHHTTCHHH
T ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHCHHH
T ss_conf 08866875664798855355874436805899998857999999984961387756899988549989899998857898
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~sl~~l~~~~~e~~~l~l~f~~~~~~~~~~~~~eL~~~G~~~~VT~~N~~~yv~~~~~~~l~~~~~~~~~afr~Gf~~v 240 (374)
T d1nd7a_ 161 YNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGFNEV 240 (374)
T ss_dssp HHHHHHHHSSCSCSSCCCCBSEECCCSSTTCCCEESSTTGGGCBCCTTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 87499998546410466035787751278742254478997652068789999999999997211789999999869876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ip~~~l~~f~~~eL~~licG~~~id~~~l~~~~~y~gy~~~s~~i~~fw~vl~~~t~ee~~~fL~FvTGs~rlP~~G~~~ 320 (374)
T d1nd7a_ 241 VPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRHYTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAE 320 (374)
T ss_dssp SCGGGGTTCCHHHHHHHHHCCCCCCHHHHHHTEEEESCCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCCCTTCGGG
T ss_pred CCHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHEEECCCCCCCCCCHHH
T ss_conf 79898764889999986279987788999643261367899889999999877069999987446636899889864565
Q ss_pred -----------------------------------------------------C
Q ss_conf -----------------------------------------------------9
Q 000711 482 -----------------------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------------------s 482 (1338)
-
T Consensus 321 l~~~~~~~~~~i~~~~~~~~LP~A~TCfn~L~LP~Yss~e~l~ekL~~AI~~~e 374 (374)
T d1nd7a_ 321 LMGSNGPQKFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETE 374 (374)
T ss_dssp CEETTEECCEEEECCSCTTSCCEEEGGGTEEECCCCSSHHHHHHHHHHHHHSCC
T ss_pred HCCCCCCCCEEECCCCCCCCCCCHHHHHCEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 435678875131468999999705440267669898899999999999997149
|
| >d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Morphinone reductase species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=0 Score=28166.23 Aligned_cols=1 Identities=0% Similarity=-0.227 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~P~LF~Pl~Ig~~~lkNRiv~apm~~~~~~dg~~t~~~~~yy~~rA~gGlii~e~~~V~~~~~~~~~~~~i~~d~~ 80 (374)
T d1gwja_ 1 TSFSNPGLFTPLQLGSLSLPNRVIMAPLTRSRTPDSVPGRLQQIYYGQRASAGLIISEATNISPTARGYVYTPGIWTDAQ 80 (374)
T ss_dssp CCCCCCCTTSCEEETTEEESCSEEECCCCCCCCSSSCCCHHHHHHHHHTTTSSEEEEEEEESSGGGCCBTTCCBCSSHHH
T ss_pred CCCCCCCCCCCEEECCEEECCCEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCHHHH
T ss_conf 99994999998418998978875874458988999998799999999984878799974798886578889873555554
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 i~~~k~l~~~vh~~G~~i~~QL~H~Gr~~~~~~~~~g~~~~~ps~~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ 160 (374)
T d1gwja_ 81 EAGWKGVVEAVHAKGGRIALQLWHVGRVSHELVQPDGQQPVAPSALKAEGAECFVEFEDGTAGLHPTSTPRALETDGIPG 160 (374)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECCTTSCCTTTSGGGCCCEESSSCCCTTCEEEEECTTSCEEEEECCCCEECCGGGHHH
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 15666689998605862676554168655545588887100035556667655443565544567878860049999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ii~~f~~AA~rA~~AGfDgVEIH~ahGYLl~qFLSp~~N~RtDeYGGSlENR~Rf~~EIi~aIR~~vg~~~v~~r~~~~~ 240 (374)
T d1gwja_ 161 IVEDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFL 240 (374)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTC
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEC
T ss_conf 99999999999998099888732220346778887535764454343121100567889998998838753225553100
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~g~~~~~~~~~~~~~~~~ld~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pvi~~G~i~~~~ae~~l~~g~aD 320 (374)
T d1gwja_ 241 ELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGDITYPEGFREQMRQRFKGGLIYCGNYDAGRAQARLDDNTAD 320 (374)
T ss_dssp CCTTCCCSCHHHHHHHHHHHHHHHTCSEEEEECSCBTTBCCCCCTTHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCS
T ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCC
T ss_conf 23687653247888876413110472277751576457886524999999998738878997895999999999869974
Q ss_pred -----------------------------------------------------C
Q ss_conf -----------------------------------------------------9
Q 000711 482 -----------------------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------------------s 482 (1338)
-
T Consensus 321 lV~~gR~~iadPd~~~K~~~G~~l~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~ 374 (374)
T d1gwja_ 321 AVAFGRPFIANPDLPERFRLGAALNEPDPSTFYGGAEVGYTDYPFLDNGHDRLG 374 (374)
T ss_dssp EEEESHHHHHCTTHHHHHHHTCCCCCCCGGGSSSSSSTTTTCCCCCCCSSCCCC
T ss_pred EEHHHHHHHHCCCHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHCC
T ss_conf 844669998792299999759988888841125799988387888542235319
|
| >d1rp4a_ a.227.1.1 (A:) Endoplasmic oxidoreductin 1, Ero1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: ERO1-like superfamily: ERO1-like family: ERO1-like domain: Endoplasmic oxidoreductin 1, Ero1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=28165.25 Aligned_cols=1 Identities=100% Similarity=2.131 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
+
T Consensus 1 ~s~~~vd~~N~~i~p~L~~L~~~dyFRyfkVnL~~~CPFW~~d~~~C~~~~C~V~~c~dee~iP~~~~~~~~~~~~~~~~ 80 (374)
T d1rp4a_ 1 GSFNELNAINENIRDDLSALLKSDFFKYFRLDLYKQCSFWDANDGLCLNRACSVDVVEDWDTLPEYWQPEILGSFNNDTM 80 (374)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSTTTSEEEEESSCCCSSSCSSSSCCCTTTTBCCCSSCGGGSCGGGSHHHHTCCCTTTC
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 97878999899988999986378960434338899898999432574998998803775565861024101046664112
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dfC~~dD~~~~~~~YVdLl~NPERyTGY~G~~a~~IW~~IY~ENCF~~~~ 160 (374)
T d1rp4a_ 81 KEADDSDDECKFLDQLCQTSKKPVDIEDTINYCDVNDFNGKNAVLIDLTANPERFTGYGGKQAGQIWSTIYQDNCFTIGE 160 (374)
T ss_dssp EECCTTCGGGSBHHHHSSTTTSSCCSSSCCCHHHHTTCCCTTEEEEETTTSCCCCCCBCHHHHHHHHHHHHHTCCCCTTS
T ss_pred HHCCCCCCCHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 21145653002204033320355554431101334456777754766300856235888873788999999975789876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~c~ekrvfyrlISGlHsSIs~Hl~~~yl~~~~~~w~pN~~~f~~R~g~~p~rl~NLYF~y~~~LrAl~k~~~~l~~~~ 240 (374)
T d1rp4a_ 161 TGESLAKDAFYRLVSGFHASIGTHLSKEYLNTKTGKWEPNLDLFMARIGNFPDRVTNMYFNYAVVAKALWKIQPYLPEFS 240 (374)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHSEEETTTTEEECCHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHGGGCCCCS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 43107788999988888888999998764167767637899999999736838889899999999999998888886467
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~l~~~~~~~~fde~~~f~~~~~~~lk~efr~~frnisriMDCV~CeKCrLwGKlQt~GlgtALKIL 320 (374)
T d1rp4a_ 241 FCDLVNKEIKNKMDNVISQLDTKIFNEDLVFANDLSLTLKDEFRSRFKNVTKIMDCVQCDRCRLWGKIQTTGYATALKIL 320 (374)
T ss_dssp TTSSTTTTHHHHHHHHHHTTCCGGGGSCTTCTTTSCHHHHHHHHHHHHHHHHGGGGCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 77877789999999999871666678888538841399999999999999999716676376756899887799999998
Q ss_pred -----------------------------------------------------C
Q ss_conf -----------------------------------------------------9
Q 000711 482 -----------------------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------------------s 482 (1338)
-
T Consensus 321 f~~~~~~~~~~~~~~~~L~R~ElvALiNt~~rlS~SI~~v~~F~~m~~~~~~~~ 374 (374)
T d1rp4a_ 321 FEINDADEFTKQHIVGKLTKYELIALLQTFGRLSESIESVNMFEKMYGKRLLER 374 (374)
T ss_dssp HHHHTCCHHHHHHHHHTSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 535553346766664554599999999999999999999999999999764129
|
| >d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Glutamine synthetase/guanido kinase superfamily: Glutamine synthetase/guanido kinase family: Glutamine synthetase catalytic domain domain: Glutamine synthetase, C-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=0 Score=28165.11 Aligned_cols=1 Identities=0% Similarity=-0.194 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~DPR~iLkk~~~~l~~~G~~~~~~~g~E~EF~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T d2bvca2 1 SRDPRNIARKAENYLISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEVDAISGWWNTGAATEADGSPNRGYKVRHKG 80 (374)
T ss_dssp TTCHHHHHHHHHHHHHHHSSCSEEEEEEEECEEEESEEEEEECSSCEEEEEECTTBGGGTTCSBCTTSCBCCCCCBCTTC
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEEECEEEEEECCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98869999999999997799870357726589997145445566776201363000246787656788887786656566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~i~~~l~~~Gi~~~~~~~E~~~~gQ~Ei~~~~~~~l~aAD~~~~~k~~ik~vA~~~G~~atFmp 160 (374)
T d2bvca2 81 GYFPVAPNDQYVDLRDKMLTNLINSGFILEKGHHEVGSGGQAEINYQFNSLLHAADDMQLYKYIIKNTAWQNGKTVTFMP 160 (374)
T ss_dssp CSCBCTTTSCCHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTCEEECCS
T ss_pred CEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 50002000226899999998787469763763215666825887067630668999999999999999986397477764
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 KP~~~~~Gsg~H~h~Sl~~~~~n~~~~~~~~~~lS~~~~~~iaGlL~h~~~l~al~~P~vNSY~Rl~~~~~ap~~~~Wg~ 240 (374)
T d2bvca2 161 KPLFGDNGSGMHCHQSLWKDGAPLMYDETGYAGLSDTARHYIGGLLHHAPSLLAFTNPTVNSYKRLVPGYEAPINLVYSQ 240 (374)
T ss_dssp CSSTTSCCCCEEEEEEEEETTEECSBCTTSGGGBCHHHHHHHHHHHHHHHHHHHHHSCSTTHHHHSSTTSSSCSBCCEEE
T ss_pred EECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEEECC
T ss_conf 31567887660079974158988655566655567999999999985209888987378742653489875644774046
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~nR~~~iRi~~~~~~~~~~riE~R~~da~aNPYL~lAailaagl~Gi~~~l~p~~p~~~~~~~~~~~~~~~~~~LP~sl~ 320 (374)
T d2bvca2 241 RNRSACVRIPITGSNPKAKRLEFRSPDSSGNPYLAFSAMLMAGLDGIKNKIEPQAPVDKDLYELPPEEAASIPQTPTQLS 320 (374)
T ss_dssp TCTTSSEEECCCCSCTTSCCEEECSCCSSSCHHHHHHHHHHHHHHHHHTTCCCCCCCCSCGGGCCHHHHHTSCBCCSSHH
T ss_pred CCCCCCEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHH
T ss_conf 76655311024468975626885278833107899999999866656412344687778513299657658132501799
Q ss_pred -----------------------------------------------------C
Q ss_conf -----------------------------------------------------9
Q 000711 482 -----------------------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------------------s 482 (1338)
-
T Consensus 321 eAl~~l~~d~~~~~~~~~~g~~~i~~y~~~Kr~~E~~~~~~~vt~wE~~~Y~~~ 374 (374)
T d2bvca2 321 DVIDRLEADHEYLTEGGVFTNDLIETWISFKRENEIEPVNIRPHPYEFALYYDV 374 (374)
T ss_dssp HHHHHHHHCCHHHHGGGSSCHHHHHHHHHHHHHHTHHHHHTSCCHHHHHHHTTC
T ss_pred HHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCC
T ss_conf 999999759787876563789999999999999999999689999999604899
|
| >d1so7a_ b.68.1.1 (A:) Sialidase 2 (Neu2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Sialidase 2 (Neu2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28160.34 Aligned_cols=1 Identities=0% Similarity=-2.089 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~p~~~~~~~f~~g~~~yRiP~lv~~~~g~~l~A~a~~r~~~~d~~~~~iv~~rS~D~G~T~~~~Ws~~~~v~~~~~~~~~ 80 (374)
T d1so7a_ 1 LPVLQKESVFQSGAHAYRIPALLYLPGQQSLLAFAEQRASKKDEHAELIVLRRGDYDAPTHQVQWQAQEVVAQARLDGHR 80 (374)
T ss_dssp CCCSEEEEEEECTTCCEEEEEEEEETTTTEEEEEEEECC-------CEEEEEEEEEEGGGTEEEECCCEECTTSCCTTEE
T ss_pred CCCCCEEEEEECCCCCEEECEEEEECCCCEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCE
T ss_conf 99431267768895368647799985999999999687677668987699999637883043466798994778989955
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~p~~~~d~~~g~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~p~~i~~~~~~~~~~~~~~~~~~~~~ 160 (374)
T d1so7a_ 81 SMNPCPLYDAQTGTLFLFFIAIPGQVTEQQQLQTRANVTRLCQVTSTDHGRTWSSPRDLTDAAIGPAYREWSTFAVGPGH 160 (374)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEESSCCHHHHHCTTCCCCEEEEEEESSTTSSCCCCEECHHHHHGGGGGGEEEEEECSSC
T ss_pred EEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEECCCCCCCCCCCCCEEEEEECCC
T ss_conf 56212789899997999998506877653224688885408999688886335686026610145435774366520233
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~r 240 (374)
T d1so7a_ 161 CLQLNDRARSLVVPAYAYRKLHPIQRPIPSAFCFLSHDHGRTWARGHFVAQDTLECQVAEVETGEQRVVTLNARSHLRAR 240 (374)
T ss_dssp CEECCSTTCCEEEEEEEEECCSSSSCCEEEEEEEEESSTTSSCEECCCCSBSEEEEEEEEEEC--CEEEEEEEEESSSEE
T ss_pred CEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEECCCCCCCE
T ss_conf 12664048868866676516766678971499999358754110156568888422588851456643677425478967
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~S~D~G~tW~~~~~~~~l~~~~~~~~~~s~i~~~~~~~~~~~~~~~ll~~~p~~~~~r~~~~l~l~~S~D~G~tW~~ 320 (374)
T d1so7a_ 241 VQAQSTNDGLDFQESQLVKKLVEPPPQGCQGSVISFPSPRSGPGSPAQWLLYTHPTHSWQRADLGAYLNPRPPAPEAWSE 320 (374)
T ss_dssp EEEEESSTTSSCCCCEEEEEEECCTTTCCCCEEEEEECCCC----CSEEEEEEEECCSSSSEEEEEEEESSTTCGGGCCC
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEECCCCEECCC
T ss_conf 99996279966543202333448888885314898335434444688369983788988887608999998889916478
Q ss_pred -----------------------------------------------------C
Q ss_conf -----------------------------------------------------9
Q 000711 482 -----------------------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------------------s 482 (1338)
=
T Consensus 321 ~~~i~~g~~~YS~~~~~~dg~~~~~~i~~lyE~~~~~~i~f~~~~l~~~~~~~~ 374 (374)
T d1so7a_ 321 PVLLAKGSCAYSDLQSMGTGPDGSPLFGCLYEANDYEEIVFLMFTLKQAFPAEY 374 (374)
T ss_dssp CEEEEEEEEEEEEEEEEEECTTSSEEEEEEEEETTTTEEEEEEEEHHHHCGGGC
T ss_pred CEEECCCCCCCCHHEECCCCCCCCEEEEEEEECCCCCEEEEEEEEHHHHCCCCC
T ss_conf 548688997684525867998885699999956997657999989999175779
|
| >d1kfwa1 c.1.8.5 (A:10-327,A:389-444) Psychrophilic chitinase B {Arthrobacter sp., tad20 [TaxId: 1667]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Type II chitinase domain: Psychrophilic chitinase B species: Arthrobacter sp., tad20 [TaxId: 1667]
Probab=100.00 E-value=0 Score=28157.82 Aligned_cols=1 Identities=0% Similarity=-0.393 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~g~rvvgYy~~W~~y~r~~~~~~l~~~i~~~~lTHi~YAFa~i~~~~~~~~~~~~~~~~~~~g~~~~~d~~~d~ 80 (374)
T d1kfwa1 1 PLTSTVNGYRNVGYFAQWGVYGRAFQAKQLDVSGTAKNLTHINYSFGNINNQTLTCFMANKAQGTGPNGSDGAGDAWADF 80 (374)
T ss_dssp CCBSSBTTBEEEEEEEGGGGSTTCCCHHHHHHTSCGGGCSEEEEEEECBCTTTCSBCCCEECCCSSTTTTTTCEEHHHHH
T ss_pred CCCCCCCCCEEEEEECCCEECCCCCCHHHCCCCCCHHHCCEEEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 98888888789999895400588898634767798524987999123014875532024311134778752347606541
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lK~~~p~lKvllSiGGw~~s~~F~~~a~~~~~R~~Fi~s~v~~~~~~~l~ 160 (374)
T d1kfwa1 81 GMGYAADKSVSGKADTWDQPLAGSFNQLKQLKAKNPKLKVMISLGGWTWSKNFSKAAATEASRQKLVSSCIDLYIKGNLP 160 (374)
T ss_dssp TCCCCTTTSSSSSCCCTTCSCCHHHHHHHHHHTTCTTCEEEEEEECSSSCTTHHHHTSSHHHHHHHHHHHHHHHTSCCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 33334444456655653321013689999998618997599998189877763111047889999999999999981975
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~FDGiDiDWEyP~~~~~~~~~~~~~~~D~~nf~~Ll~eLR~~ld~~~~~~~k~~~Ls~A~~~~~~~~ 240 (374)
T d1kfwa1 161 NFEGRGGAGAAAGIFDGIDIDWEWPGTNSGLAGNGVDTVNDRANFKALLAEFRKQLDAYGSTNNKKYVLSAFLPANPADI 240 (374)
T ss_dssp EETTEEETTTTTTTCCEEEEECSCTTSSCSSTTCCCCTTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECSSHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCC
T ss_conf 21111232233244663011226514446777777887648999999999999999987563575389999852540011
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~d~~~i~~~vD~invMtYD~~G~w~~~~tg~~apLy~~~~~~~~~~~~~svd~aV~~~~~~Gvp~~KlvlGipyd~ 320 (374)
T d1kfwa1 241 DAGGWDDPANFKSLDFGSIQGYDLHGAWNPTLTGHQANLYDDPADPRAPSKKFSADKAVKKYLAAGIDPKQLGLGLAADN 320 (374)
T ss_dssp HHHTTTCGGGGGTCSEEEECCSCSSCTTSTTBCCCSSCSSCCTTCCSCGGGCCCHHHHHHHHHHTTCCGGGEEEEEESCC
T ss_pred CCCCCCHHHHHCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCHHHEEEEECCCC
T ss_conf 23473266452004799997144046789987776675779977877777770699999999987999899389846799
Q ss_pred -----------------------------------------------------C
Q ss_conf -----------------------------------------------------9
Q 000711 482 -----------------------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~si~~K~~y~~~~glgG~m~W~~~~D~~g~Ll~a~~~~l~~~~~~~~~~~~p~ 374 (374)
T d1kfwa1 321 IATTKQKTDYIVSKGLGGGMWWELSGDRNGELVGAMSDKFRAAAPGPVTEAAPP 374 (374)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECGGGCTTCHHHHHHHHHHHHSSCCSCCCBCCC
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 999999999998569953999975579997499999998458899987788998
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=100.00 E-value=0 Score=28093.24 Aligned_cols=1 Identities=100% Similarity=0.902 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
|
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFLIDSLGLREKQQFP 80 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTEEEESSCCCBCCCSHHHHHHHHHTTCGGGEECC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCCCEEEECCCEEEECCCHHHHHHHHHHCCCCCCCCC
T ss_conf 99899989688999999999868998999958998858668954299899538658727887999999983885212332
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (373)
T d1seza1 81 LSQNKRYIARNGTPVLLPSNPIDLIKSNFLSTGSKLQMLLEPILWKNKKLSQVSDSHESVSGFFQRHFGKEVVDYLIDPF 160 (373)
T ss_dssp SSCCCEEEESSSSEEECCSSHHHHHHSSSSCHHHHHHHHTHHHHC----------CCCBHHHHHHHHHCHHHHHTTHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCHHCCCCHH
T ss_conf 11233212244333221122134442122211355566788887642000000111000000012223432001011012
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~ 240 (373)
T d1seza1 161 VAGTCGGDPDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLGGMQTLTDAICKD 240 (373)
T ss_dssp HHHHHSCCGGGSBHHHHCHHHHHHHHHTSCHHHHHHHHTTC----------CCCSCCSTTCSCBEETTCTHHHHHHHHTT
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH
T ss_conf 21010233110025567899987641001445567876404322222101234333203540453034612799999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 l~~~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~ 320 (373)
T d1seza1 241 LREDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVYGH 320 (373)
T ss_dssp SCTTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTTSCCCCCT
T ss_pred HCCCEEECCCEEEEEEEECCCCCCCCCCEEEECCCCCCCCEEEECCEEEECCCHHHHHHCCCCCCCCCCCHHHHCCCCCC
T ss_conf 50655764987899999678542113552786124789746998899999986577653365557775332330100245
Q ss_pred ----------------------------------------------------C
Q ss_conf ----------------------------------------------------9
Q 000711 482 ----------------------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------------------s 482 (1338)
|
T Consensus 321 ~~~~~~~~~~~~~t~~pglf~aGd~~~g~~~~~A~~~G~~aA~~i~~~L~~~~ 373 (373)
T d1seza1 321 NYDSVLDAIDKMEKNLPGLFYAGNHRGGLSVGKALSSGCNAADLVISYLESVS 373 (373)
T ss_dssp THHHHHHHHHHHHHHSTTEEECCSSSSCSSHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 78867626423478999999972578765399999999999999999875289
|
| >d1v4va_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDP-N-acetylglucosamine 2-epimerase domain: UDP-N-acetylglucosamine 2-epimerase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=28090.91 Aligned_cols=1 Identities=100% Similarity=2.331 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
|
T Consensus 1 ~MkkI~~v~GtR~e~~kl~pli~~l~~~~~~~~~li~tG~H~~~~~~~~~~~~i~~d~~l~~~~~~~s~~~~~~~~~~~~ 80 (373)
T d1v4va_ 1 GMKRVVLAFGTRPEATKMAPVYLALRGIPGLKPLVLLTGQHREQLRQALSLFGIQEDRNLDVMQERQALPDLAARILPQA 80 (373)
T ss_dssp CCEEEEEEECSHHHHHHHHHHHHHHHTSTTEEEEEEECSSCHHHHHHHHHTTTCCCSEECCCCSSCCCHHHHHHHHHHHH
T ss_pred CCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99769999873697999999999997189998899992688255637122408886656787888887789999999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~l~~~kPD~vlv~GDr~e~la~a~aa~~~~ipi~HiegG~rsg~~~~~~~de~~R~~iskls~~hf~~t~~~~~~L~~ 160 (373)
T d1v4va_ 81 ARALKEMGADYVLVHGDTLTTFAVAWAAFLEGIPVGHVEAGLRSGNLKEPFPEEANRRLTDVLTDLDFAPTPLAKANLLK 160 (373)
T ss_dssp HHHHHHTTCSEEEEESSCHHHHHHHHHHHHTTCCEEEETCCCCCSCTTSSTTHHHHHHHHHHHCSEEEESSHHHHHHHHT
T ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCHHHHHHHHH
T ss_conf 66664037640011136753103778898762122241343455433567616666655223443255122156666666
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~Ge~~~~I~~vG~p~~D~i~~~~~~~~~~~~~~~~~~~lvt~hr~~n~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~ 240 (373)
T d1v4va_ 161 EGKREEGILVTGQTGVDAVLLAAKLGRLPEGLPEGPYVTVTMHRRENWPLLSDLAQALKRVAEAFPHLTFVYPVHLNPVV 240 (373)
T ss_dssp TTCCGGGEEECCCHHHHHHHHHHHHCCCCTTCCSSCEEEECCCCGGGGGGHHHHHHHHHHHHHHCTTSEEEEECCSCHHH
T ss_pred HCCCCCCEEECCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 30454213442662155777654311000223445531688426555312789999999986533565035640342221
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~n~~~~~~l~~~~~l~ll~~s~~vignSssgi~Ea~~lg~P~Inir~~~eRqeg~~~g~nvlv~~d~~~ 320 (373)
T d1v4va_ 241 REAVFPVLKGVRNFVLLDPLEYGSMAALMRASLLLVTDSGGLQEEGAALGVPVVVLRNVTERPEGLKAGILKLAGTDPEG 320 (373)
T ss_dssp HHHHHHHHTTCTTEEEECCCCHHHHHHHHHTEEEEEESCHHHHHHHHHTTCCEEECSSSCSCHHHHHHTSEEECCSCHHH
T ss_pred HHHHHHHHCCCCCCEEECCCHHHHHHHHHHHCEEEECCCCHHHHCCHHHCCCEEEECCCCCCHHHHHCCEEEECCCCHHH
T ss_conf 03555543033320011100078888876430168506412222003205868984887669878962904975899999
Q ss_pred ----------------------------------------------------C
Q ss_conf ----------------------------------------------------9
Q 000711 482 ----------------------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------------------s 482 (1338)
-
T Consensus 321 I~~~i~~~l~~~~~~~~~~~~~npYGdG~as~rI~~~L~~~~~~~~~~~~~~~ 373 (373)
T d1v4va_ 321 VYRVVKGLLENPEELSRMRKAKNPYGDGKAGLMVARGVAWRLGLGPRPEDWLP 373 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHSCCSSCCSCHHHHHHHHHHHHTTSSCCCCCCCC
T ss_pred HHHHHHHHHCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 99999999719898864024889898987999999999998489989878899
|
| >d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Dextranase, catalytic domain domain: Dextranase, catalytic domain species: Penicillium minioluteum [TaxId: 28574]
Probab=100.00 E-value=0 Score=28090.83 Aligned_cols=1 Identities=100% Similarity=-0.726 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~ga~p~~~~d~t~a~~~a~~~~~~~~~~~vvy~PpG~y~~g~~~~~~~~~~~~~g~~l~~~~~~~y~~~G~~~~~~i~ 80 (373)
T d1ogmx2 1 LPSGMIPHMTPDNTQTMTPGPINNGDWGAKSILYFPPGVYWMNQDQSGNSGKLGSNHIRLNSNTYWVYLAPGAYVKGAIE 80 (373)
T ss_dssp CCGGGSCCCCTTTEEECCSEEECTTTTCSSSEEEECSEEEEECBCTTCCBSCSSSCCEECCTTCCEEEECTTEEEESCEE
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCEEEECCEEECCCEEEECCCEEECCCCEEEECCCCCEEEEEEE
T ss_conf 98886589898846875310465244689888998994638387430474588738669636743776079857986798
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~n~~i~giti~~s~~~~~~~~~~~~v~i~ 160 (373)
T d1ogmx2 81 YFTKQNFYATGHGILSGENYVYQANAGDNYIAVKSDSTSLRMWWHNNLGGGQTWYCVGPTINAPPFNTMDFNGNSGISSQ 160 (373)
T ss_dssp ECCSSCEEEESSCEEECTTSCTTCBTTTTTBSCCCTTTBCCSEEESCCCSSEEEEEESCEEECCSSCCEEECSSSCEEEE
T ss_pred ECCCCEEEEECCEEECCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECEEEECCCEEEEEECCCCEEEEE
T ss_conf 63765089971207838866632566543223346776567755899984227999677997899169987268759999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~i~~~~~~~~n~dgi~~~~~~~i~~~~~~~gDD~i~~~s~~i~v~n~~~~~~~~~~~~~~g~~g~~i~nv~v~ni~v~ 240 (373)
T d1ogmx2 161 ISDYKQVGAFFFQTDGPEIYPNSVVHDVFWHVNDDAIKIYYSGASVSRATIWKCHNDPIIQMGWTSRDISGVTIDTLNVI 240 (373)
T ss_dssp EEEEEEECCCSTTCCCCBCCTTCEEEEEEEEESSCSEECCSTTCEEEEEEEEECSSSCSEECCSSCCCEEEEEEEEEEEE
T ss_pred EEEEEECCCCCCCCEEEECCCCEEEEEEEEECCCCEEEECCCCEEEEEEEEECCCCEEEEEECCCCCCCCEEEEEEEEEE
T ss_conf 78999668877787005324878999528963887799657988999799978875247883667887631599915998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ni~f~nI~~~~~~~~~i~~~~~~~~~~~~i~nV~i~nI~~~~~~~~ 320 (373)
T d1ogmx2 241 HTRYIKSETVVPSAIIGASPFYASGMSPDSRKSISMTVSNVVCEGLCPSLFRITPLQNYKNFVVKNVAFPDGLQTNSIGT 320 (373)
T ss_dssp ECCCSSCCTTTTCEEEEECCCSSSSCCCEEEEEEEEEEEEEEECSSBCEEEEECCSEEEEEEEEEEEEETTCBCCSTTCT
T ss_pred CCEECCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEEEEEECCCC
T ss_conf 85611220033434443322112100689869992899919998753676999876788888332189984499804571
Q ss_pred ----------------------------------------------------C
Q ss_conf ----------------------------------------------------9
Q 000711 482 ----------------------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------------------s 482 (1338)
|
T Consensus 321 ~~~~~~~~~~~~~~~~~~Ni~i~~~~i~~~n~~~~~~~~~~~~g~~~~~~~~~ 373 (373)
T d1ogmx2 321 GESIIPAASGLTMGLAISAWTIGGQKVTMENFQANSLGQFNIDGSYWGEWQIS 373 (373)
T ss_dssp TCEEECCCTTCCEEEEEEEEEETTEECCTTTCSTTSSSCEEECGGGTTTCEEC
T ss_pred EEEEEECCCCCCCCEEEECEEEECEEEECCCCCCCCCCEEEECCCCCCCCCCC
T ss_conf 66875014687388578676991969864777777321678777504531229
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=100.00 E-value=0 Score=28091.62 Aligned_cols=1 Identities=0% Similarity=0.504 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~a~~~~~~~~~a~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~~~a~SpDG~~l 80 (373)
T d2madh_ 1 SSASAAAAAAAAALAAGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEF 80 (373)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCCCEEECCCCCEE
T ss_conf 90565434310132145678986563018999789997342257876599998999979999957988607986899989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~ 160 (373)
T d2madh_ 81 ALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSD 160 (373)
T ss_pred EEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCEE
T ss_conf 99960577532124531899997778938889726885136851689708998589937999986987467762368728
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 240 (373)
T d2madh_ 161 DQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQAD 240 (373)
T ss_pred EEEECCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEEEECCCCCCCCEEEEEEECCCCEEEEECCCCEEEEEE
T ss_conf 99824520699962899199999479939999747742667886300366753043458878994299925896599997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~ 320 (373)
T d2madh_ 241 ISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDV 320 (373)
T ss_pred CCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCE
T ss_conf 68990789776305647578664136741335771499759995488824786258986999989999698986689982
Q ss_pred ----------------------------------------------------C
Q ss_conf ----------------------------------------------------9
Q 000711 482 ----------------------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------------------s 482 (1338)
+
T Consensus 321 ~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~~ 373 (373)
T d2madh_ 321 DAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNEA 373 (373)
T ss_pred EEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCEEEEECCC
T ss_conf 58999989998999996799929999999998999988889898189984689
|
| >d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Plasmepsin (a hemoglobin-degrading enzyme) species: Plasmodium vivax [TaxId: 5855]
Probab=100.00 E-value=0 Score=28088.55 Aligned_cols=1 Identities=0% Similarity=-0.161 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~Y~~~I~iGtP~Q~~~v~~D 80 (373)
T d1miqa_ 1 HLTLAFKIERPYDKVLKTISKKNLKNYIKETFNFFKSGYMKQNYLGSENDVIELDDVANIMFYGEGEVGDNHQKFMLIFD 80 (373)
T ss_dssp CEEEEEEEECHHHHHHHHSCHHHHHHHHHHHHHHHTTSCTTCCCCCBTTBCCCGGGTBCEEEECCCEETTTTEECCEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCEEEEEEEE
T ss_conf 92233303582467787766666889887644331134232122256787687255169789999998799989999997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 TGSs~lWv~~~~C~~~~c~~~~~y~~~~SsT~~~~~~~~~~~y~~G~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~~~~~ 160 (373)
T d1miqa_ 81 TGSANLWVPSKKCNSSGCSIKNLYDSSKSKSYEKDGTKVDITYGSGTVKGFFSKDLVTLGHLSMPYKFIEVTDTDDLEPI 160 (373)
T ss_dssp TTCCCEEEEBTTCCSSGGGGSCCBCGGGCTTCEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEECGGGTTH
T ss_pred CCCHHEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCEEEEEEEEEEEEECCCCEEEEEEEEEECCCCCCC
T ss_conf 99625189879999743468982389889853388963899928817999999788897674267668999840356753
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~g~l~~Gg~d~~~~~g~~~~~pv~~~~~w~ 240 (373)
T d1miqa_ 161 YSSVEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQ 240 (373)
T ss_dssp HHHSCCCEEEECSSCCTTCSSCCCHHHHHHHTTSSSSSEEEEECCTTCTTEEEEEESSCCGGGEEEEEEEEEBSSSSSSE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHCCCCCEEEEEECCCCCCCCEEECCCCCCHHCCCEEEEEECCCCCEEE
T ss_conf 23566563566444433578854301124443225653278871367888715642677830114424687114552489
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 i~l~~~~~~~~~~~~~~iiDTGTs~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~P~itf~f~g~~~~l~p~~y~ 320 (373)
T d1miqa_ 241 IDLDVHFGKQTMEKANVIVDSGTTTITAPSEFLNKFFANLNVIKVPFLPFYVTTCDNKEMPTLEFKSANNTYTLEPEYYM 320 (373)
T ss_dssp EEEEEEETTEEEEEEEEEECTTBSSEEECHHHHHHHHHHHTCEECTTSSCEEEETTCTTCCCEEEECSSCEEEECGGGSE
T ss_pred EEEEEEECCEECCCCCEEECCCCCEECCCHHHHHHHHHHHCCEECCCCCEEEECCCCCCCCEEEEEECCEEEEECHHHEE
T ss_conf 99998778675487416862677213157899999999839755068970675344688863999999999998889906
Q ss_pred ----------------------------------------------------C
Q ss_conf ----------------------------------------------------9
Q 000711 482 ----------------------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~~~~~C~~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~rIGfA~ak~ 373 (373)
T d1miqa_ 321 NPILEVDDTLCMITMLPVDIDSNTFILGDPFMRKYFTVFDYDKESVGFAIAKN 373 (373)
T ss_dssp EESSSSSCSEEEESEEECCSSSSEEEECHHHHHHEEEEEETTTTEEEEEEECC
T ss_pred EEEEECCCCEEEEEEEECCCCCCCEEECHHHHCCEEEEEECCCCEEEEEECCC
T ss_conf 88996799899999998888999899717943769999999999999998079
|
| >d1qo0a_ c.93.1.1 (A:) Amide receptor/negative regulator of the amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Amide receptor/negative regulator of the amidase operon (AmiC) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=0 Score=28088.17 Aligned_cols=1 Identities=0% Similarity=-0.791 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~pvIG~~~p~tG~~a~~G~~~~~g~~lAv~~iN~~GGi~Gr~i~l~~~D~~~~~~~a~~~a~~Li~~~~V~aiiG~~~S~ 80 (373)
T d1qo0a_ 1 RPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCYMSH 80 (373)
T ss_dssp CCEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHHTTCBTTBCCEEEEECCTTCHHHHHHHHHHHHHHSCCCEEEECCSHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECHHHH
T ss_conf 98899972886842655299999999999998850996886889999769999999999999999608966998041333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~av~~~~~~~~vp~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~vaii~~d~~~g~~~~~~~~~~~~~ 160 (373)
T d1qo0a_ 81 TRKAVMPVVERADALLCYPTPYEGFEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNHVMRHLYRQ 160 (373)
T ss_dssp HHHHHHHHHHHHTCEEEECSCCCCCCCCTTEEECSCCGGGTHHHHHHHHHHHSCSEEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCEEECCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHC
T ss_conf 24456899997199678223354345687336604671787777888987515742553467764037888653111220
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~G~~vv~~~~~~~~~~~~d~~~~~~~i~~~~pd~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (373)
T d1qo0a_ 161 HGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASLTTSEAEVAKMESDV 240 (373)
T ss_dssp TTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCSEEEEECCSTTHHHHHHHHHHHHCSSCCCCEEESSCCHHHHTTSCHHH
T ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 36733678971676442046799999875188732320235047779999998457656640125545248776444443
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~aY~a~~~~a~Ai~~ag~~d~~~i~~aL~~~~~~~~~G~ 320 (373)
T d1qo0a_ 241 AEGQVVVAPYFSSIDTPASRAFVQACHGFFPENATITAWAEAAYWQTLLLGRAAQAAGNWRVEDVQRHLYDIDIDAPQGP 320 (373)
T ss_dssp HTTCEEEESCCTTCCSHHHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHSSCCEEETTEE
T ss_pred HCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEECCCEE
T ss_conf 05720102442000027789999999987398788770799999999999999998689999999999855953078365
Q ss_pred ----------------------------------------------------C
Q ss_conf ----------------------------------------------------9
Q 000711 482 ----------------------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------------------s 482 (1338)
-
T Consensus 321 i~f~~~~~~~~~~~~i~q~~~dg~~~vv~~~~~~v~p~p~~~~~~~~~w~~~~ 373 (373)
T d1qo0a_ 321 VRVERQNNHSRLSSRIAEIDARGVFQVRWQSPEPIRPDPYVVVHNLDDWSASM 373 (373)
T ss_dssp EEECTTTSBEEBCCEEEEECTTSCEEEEEECSSCBCCCTTCCSCCGGGGGGGC
T ss_pred EEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99838998346866999993699589996069836799974888865455569
|
| >d1m0wa2 d.142.1.6 (A:6-210,A:324-491) Eukaryotic glutathione synthetase ATP-binding domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Eukaryotic glutathione synthetase ATP-binding domain domain: Eukaryotic glutathione synthetase ATP-binding domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=28085.63 Aligned_cols=1 Identities=0% Similarity=-1.158 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~s~~~~~~l~~~~~dwa~~hGl~~~~~~~~~~~~~~~~aP~tL~Pspfpr~~F~~a~~vq~~~n~L~~~vS~D~~~~~~f 80 (373)
T d1m0wa2 1 PSKDQLNELIQEVNQWAITNGLSMYPPKFEENPSNASVSPVTIYPTPIPRKCFDEAVQIQPVFNELYARITQDMAQPDSY 80 (373)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCEECCTTGGGCTTEEEECCEESSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCEECCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 98799999999999999971947436877789886145787952776888999999999999999999997240426899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 L~~~l~~~~~~D~~Ft~~L~~i~~~v~~~g~~~~q~i~Lgl~RSDYMld~~~~~~~~KQVE~NTIa~sfg~ls~~v~~lH 160 (373)
T d1m0wa2 81 LHKTTEALALSDSEFTGKLWSLYLATLKSAQYKKQNFRLGIFRSDYLIDKKKGTEQIKQVEFNTVSVSFAGLSEKVDRLH 160 (373)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHHHHTSCCSSCCCCCEEEEEEEEEEEEEETTEEEEEEEEEECSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHCCCCCCCCHHHHEEEEEEEHHHHHHHHHHHHHH
T ss_conf 99998767405889999999999999854446243258744301321477666523441230020020121888999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~l~~~~~~d~~~~~~~d~~~~~~~~~~~le~~~a~~~~~~l~g~KKvQq~La~pgvLe~Fl~d~~~~~~lr~tF~~ly~ 240 (373)
T d1m0wa2 161 SYLNRANKYDPKGPIYNDQNMVISDSGYLLSKALAKAVESYKSQQKKIQQLLTDEGVLGKYISDAEKKSSLLKTFVKIYP 240 (373)
T ss_dssp HHHHHTTSSCTTSCSSCGGGBCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHTTSHHHHTTTCCCHHHHHHHHTTCCCEEE
T ss_pred HHHHHCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCHHHHHHHHHHHCCCCC
T ss_conf 99985557788775016886545155189886666466776467652672103668898867988999999998504786
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 Ld~~~~g~~~~~~Al~~p~~~VLKPQrEGGGnniyg~dI~~~L~~l~~~e~~ayILMerI~Pp~~~~~~~~r~~~~~~~~ 320 (373)
T d1m0wa2 241 LDDTKLGREGKRLALSEPSKYVLKPQREGGGNNVYKENIPNFLKGIEERHWDAYILMELIEPELNENNIILRDNKSYNEP 320 (373)
T ss_dssp CSSSHHHHHHHHHHHHCGGGEEEEESSCSSCCCEEGGGHHHHHHTSCGGGGGGEEEEECCCCCCBCSCCEEETTEEECCC
T ss_pred CCCCHHHHHHHHHHHCCCHHEEECCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCEEEECCCEEEECC
T ss_conf 78502128999998619153897455557665401479999987478444113307854179988875997299011277
Q ss_pred ----------------------------------------------------C
Q ss_conf ----------------------------------------------------9
Q 000711 482 ----------------------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------------------s 482 (1338)
=
T Consensus 321 ~vSELGifG~~l~~~~~v~~N~~~G~LlRTK~~~~nEGGVaaG~g~lDS~~L~ 373 (373)
T d1m0wa2 321 IISELGIYGCVLFNDEQVLSNEFSGSLLRSKFNTSNEGGVAAGFGCLDSIILY 373 (373)
T ss_dssp BEEEEEEEEEEEECSSCEEEEEEEEEEEEEECCEEETTEEEECCEEECCEEEC
T ss_pred EEECCCCCEEEEECCCEEEEECCEEEEEECCCCCCCCCCEECCEEECCCHHCC
T ss_conf 32033041899978977997165028896279988876810354223422009
|
| >d1r5ya_ c.1.20.1 (A:) Queosine tRNA-guanine transglycosylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: tRNA-guanine transglycosylase family: tRNA-guanine transglycosylase domain: Queosine tRNA-guanine transglycosylase species: Zymomonas mobilis [TaxId: 542]
Probab=100.00 E-value=0 Score=28017.15 Aligned_cols=1 Identities=0% Similarity=-1.257 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~Fei~~~d~~AR~G~L~~~~g~i~TP~fmpv~t~g~v~~ltpd~l~~~g~~~il~Ntyhl~~~pg~~~i~~~gglh 80 (372)
T d1r5ya_ 1 RPRFSFSIAAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRPGAERIAKLGGLH 80 (372)
T ss_dssp CCSCEEEEEEEETTEEEEEEEETTEEEEESEEECBCTTSSCTTCCHHHHHHTTCSCEEEEHHHHHHTTCHHHHHHTTCHH
T ss_pred CCCEEEEEEECCCCEEEEEEEECCEEEECCEEEECCCCCCCCCCCHHHHHHCCCCEEECHHHHHHHCCCCHHHHHCCCHH
T ss_conf 99607999965585004899979977679978754778808847999999728988833188887587617877426513
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~f~~~~~~iltdsGg~q~~sl~~~~~~~~~gv~f~s~~~g~~~~ltpe~~i~~q~~ig~DI~~~Ldd~~~~~~~~~~~~~ 160 (372)
T d1r5ya_ 81 SFMGWDRPILTDSGGYQVMSLSSLTKQSEEGVTFKSHLDGSRHMLSPERSIEIQHLLGSDIVMAFDECTPYPATPSRAAS 160 (372)
T ss_dssp HHHTCCSCEEEECSHHHHC-CC-CCEEETTEEEC---------CBCHHHHHHHHHHHTCSEEECCCCCCCSSCCHHHHHH
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHH
T ss_conf 34204565200247654323223455577885353226872111000779999985088467522446653101678899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~rt~~w~~~~~~~~~~~~~~~~~~~lfgivqGg~~~dlR~~s~~~l~~~~~~G~aiGgl~~~~~~~~~~~~v~~~~~~ 240 (372)
T d1r5ya_ 161 SMERSMRWAKRSRDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGYAVGGLAVGEGQDEMFRVLDFSVPM 240 (372)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHCEEEEEECCTTCHHHHHHHHHHHHHHCCSEEEECSCSSSSCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 99999999999999875055667666321131541265688889999986213732122445675067788899850200
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 Lp~~kPr~l~Gvg~P~~il~~V~~GvD~FD~~~p~r~Ar~G~alt~~g~~~l~~~~~~~d~~Pl~~~C~C~~C~~~sraY 320 (372)
T d1r5ya_ 241 LPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPINIRNARFSEDLKPLDSECHCAVCQKWSRAY 320 (372)
T ss_dssp SCTTSCEEETTCCSHHHHHHHHTTTCCEEECSHHHHHHHTTEECCTTCCEETTSGGGTTCCSCSSSSCCSHHHHHCCHHH
T ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCEEECCCCEEECCCCCCCCCCCCCCCCCCHHHCCCCHHH
T ss_conf 12011022047898789888360589954543113111136157259832321232335689869898992325159999
Q ss_pred ---------------------------------------------------C
Q ss_conf ---------------------------------------------------9
Q 000711 482 ---------------------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------------------s 482 (1338)
=
T Consensus 321 l~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~f~~~y~ 372 (372)
T d1r5ya_ 321 IHHLIRAGEILGAMLMTEHNIAFYQQLMQKIRDSISEGRFSQFAQDFRARYF 372 (372)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 9877638836899999999999999999999999985999999999999649
|
| >d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Arginase/deacetylase superfamily: Arginase/deacetylase family: Histone deacetylase, HDAC domain: HDAC homologue species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=0 Score=28017.08 Aligned_cols=1 Identities=0% Similarity=0.005 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~k~~li~~~d~~~~~~g~~HPe~p~Rl~~i~~~L~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~~~ 80 (372)
T d1c3pa_ 1 KKVKLIGTLDYGKYRYPKNHPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFHTEDYINTLMEAERCQCVPKG 80 (372)
T ss_dssp CCEEEEECGGGGGSCCCTTCGGGSCCHHHHHHHHHHTTCCCGGGEEECCCCCHHHHTTTSCHHHHHHHHHHHHHTSCCTT
T ss_pred CEEEEEECHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCC
T ss_conf 90899968201587897843959799999999999769987880771898999999871899999999974544467522
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~p~~~~~~~~a~~~~g~~~~a~~~~~~g~~a~~ppGG~HHA~~~~a~GFC~fNnvAiaa~~l~~~~~~R 160 (372)
T d1c3pa_ 81 AREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKGNVAFNPAGGMHHAFKSRANGFCYINNPAVGIEYLRKKGFKR 160 (372)
T ss_dssp HHHHHCCSSSSSCSSTTTTHHHHHHHHHHHHHHHHHHTTCEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHHHTTCCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCC
T ss_conf 31014688767878889999998753358897653224542241246534421024313640460999999998744674
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 V~ivD~DvHhGnGtq~if~~d~~V~~~SiH~~~~~~~p~~tG~~~e~G~~~g~g~~~NiPL~~g~~D~~y~~~~~~~l~p 240 (372)
T d1c3pa_ 161 ILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKSLEI 240 (372)
T ss_dssp EEEEECSSSCCHHHHHHHTTCSSEEEEEEEECTTTSTTSSSCCTTCCCCGGGTTSEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 47874345677762577761477543000257777788888772236787665412414488655628999999986799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~f~Pd~IvvsaG~D~~~~Dplg~l~lt~~~~~~~~~~~~~~~~~~~~vleGGY~~~~~a~~~~~~~~~l~g~~~~~~ 320 (372)
T d1c3pa_ 241 VKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVREVFGEGVYLGGGGYHPYALARAWTLIWCELSGREVPEK 320 (372)
T ss_dssp HHHHCCCSEEEEECCSTTBTTCTTCSCCBCHHHHHHHHHHHHHHHCSCEEECCCCCCHHHHHHHHHHHHHHHHTCCCCSS
T ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99866976899978816677686568868888999999999985899699975878588999999999999829999845
Q ss_pred ---------------------------------------------------C
Q ss_conf ---------------------------------------------------9
Q 000711 482 ---------------------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------------------s 482 (1338)
+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 372 (372)
T d1c3pa_ 321 LNNKAKELLKSIDFEEFDDEVDRSYMLETLKDPWRGGEVRKEVKDTLEKAKA 372 (372)
T ss_dssp CCHHHHHHHHHSCCCCSSTTCCCGGGGGCSSCCCCCCCCCHHHHHHHHHHHC
T ss_pred CCHHHHHHHCCCCHHHHCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 6877887631588777424467033200247855535778899999998509
|
| >d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: RmlC-like cupins family: Germin/Seed storage 7S protein domain: Oxalate decarboxylase OxdC (YvrK) species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=28014.86 Aligned_cols=1 Identities=0% Similarity=-0.858 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~g~~~~gp~~~~~~~~~~d~~~~~~td~g~~~~~~~~f~~~~~~~~~gg~~r~~~~~~lp~~~~~a~~~~~L~ 80 (372)
T d1j58a_ 1 PQPIRGDKGATVKIPRNIERDRQNPDMLVPPETDHGTVSNMKFSFSDTHNRLEKGGYAREVTVRELPISENLASVNMRLK 80 (372)
T ss_dssp CCSEETTEECCCCSCCCHHHHHHCHHHHSCCTTCBSCCCCCEECGGGSCCEEETTEEEEEECTTTCTTCSSCEEEEEEEC
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEHHHCHHHHHHHHEEEEEC
T ss_conf 98604899998889877666531864458997766755105642133544236797147864443800331100589988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 pga~~~pH~H~~ae~~yVl~G~~~vt~Vd~~G~~~~~~l~~GDv~~~P~G~~H~i~n~~dg~e~l~vf~~~~~~~~~~f~ 160 (372)
T d1j58a_ 81 PGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGLPHSIQALEEGAEFLLVFDDGSFSENSTFQ 160 (372)
T ss_dssp TTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEEEEEEEEEEEEESCTTCCGGGEEE
T ss_pred CCCCCCCCCCCCCCEEEEEECEEEEEEEECCCCEEEEEECCCCEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCEE
T ss_conf 99676873637643899995779999994899489988536988998999779997179995899997788866653043
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~p~evLa~af~v~~~~~~~i~~~e~~i~~~~~p~~~~~~~~~~~~g~~~~~~~~~l~~q~P~~~~gG~~~~~d 240 (372)
T d1j58a_ 161 LTDWLAHTPKEVIAANFGVTKEEISNLPGKEKYIFENQLPGSLKDDIVEGPNGEVPYPFTYRLLEQEPIESEGGKVYIAD 240 (372)
T ss_dssp HHHHHHTSCHHHHHHHHTCCTGGGTTSCSSCCSEECCCCCCCHHHHCCCCTTCCCSSCSEEEGGGSCCEECSSEEEEEES
T ss_pred ECCCCCCCCHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEC
T ss_conf 10121359878998761999899863431223312456887423454147788998763230224688415774679926
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~fp~~~~is~~~~~l~PG~~~~~H~Hp~a~E~~yvl~G~g~v~v~~~~g~~~t~~l~~GDv~~iP~g~~H~i~N~g~e 320 (372)
T d1j58a_ 241 STNFKVSKTIASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENIGDE 320 (372)
T ss_dssp TTTSTTCCSCEEEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEEEEEEESSCEEEECTTCBEEEEECSSS
T ss_pred CCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEECEEEEEEECCCCCEEEEEECCCCEEEECCCCEEEEEECCCC
T ss_conf 33477667506999998899645887799972999999790999998579806899825985899899974999987999
Q ss_pred ---------------------------------------------------C
Q ss_conf ---------------------------------------------------9
Q 000711 482 ---------------------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------------------s 482 (1338)
.
T Consensus 321 ~l~~l~vf~s~~~~~i~~~~~l~~~P~~vv~~~~~~~~e~~~~l~~~k~~vv 372 (372)
T d1j58a_ 321 PLVFLEIFKDDHYADVSLNQWLAMLPETFVQAHLDLGKDFTDVLSKEKHPVV 372 (372)
T ss_dssp CEEEEEEESSSSCCCEEHHHHHHTSCHHHHHHHHTCCHHHHTTCCSSCCSBC
T ss_pred CEEEEEEECCCCCCEEEHHHHHHHCCHHHHHHHHCCCHHHHHHHHHCCCCCC
T ss_conf 8899999789996545687876549999999885969999998875687669
|
| >d1noya_ c.55.3.5 (A:) Exonuclease domain of family B DNA polymerases {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: DnaQ-like 3'-5' exonuclease domain: Exonuclease domain of family B DNA polymerases species: Bacteriophage T4 [TaxId: 10665]
Probab=100.00 E-value=0 Score=28014.24 Aligned_cols=1 Identities=0% Similarity=0.106 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~fytnv~~~gn~il~rg~~~~G~r~~~~~~f~Py~y~~~~~~~~~ksl~G~~v~~v~f~s~~~~r~~~~~~~~~~~~~~ 80 (372)
T d1noya_ 1 DEFYISIETVGNNIVERYIDENGKERTREVEYLPTMFRHCKEESKYKDIYGKNCAPQKFPSMKDARDWMKRMEDIGLEAL 80 (372)
T ss_dssp CCEEEEEEEETTEEEEEEECTTSCEEEEEEECCCSEECGGGGTCSSCTTTTCCCCCEECSSHHHHHHHHHHHHHHCTTCT
T ss_pred CCCCEEEEEECCEEEEEEEECCCEEEEEEECCEEEEEEECCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCEEE
T ss_conf 98661369999999999996599799999656058999858997858359908877857999999999997256663464
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~die~~~~~~~~~~~~~~~i~~I~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 160 (372)
T d1noya_ 81 GMNDFKLAYISDTYGSEIVYDRKFVRVANCDIEVTGDKFPDPMKAEYEIDAITHYDSIDDRFYVFDLLNSMYGSVSKWDA 160 (372)
T ss_dssp HHHHHHHHHHHHHTCSCCCCCGGGCCEEEEEEEECCSSCCCTTTCCSCEEEEEEEETTTTEEEEEEECCCSSCCCCCCCH
T ss_pred ECCCCCEEEHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHEEECCCCEEEEEEECCCCCCCCCCCCC
T ss_conf 02343413312316545556623225773022002346688631010000222144159879999962656566556555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~E~~lL~~F~~~~~~~dPDii~G~N~~~FD~pYL~~R~~~~~~~~~~~~~~~ 240 (372)
T d1noya_ 161 KLAAKLDCEGGDEVPQEILDRVIYMPFDNERDMLMEYINLWEQKRPAIFTGWNIEGFDVPYIMNRVKMILGERSMKRFSP 240 (372)
T ss_dssp HHHHSCGGGTCCCCCHHHHTTEEEEEESCHHHHHHHHHHHHHHSCCSEEECSSTTTTHHHHHHHHHHHHHHHHHHGGGST
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 55433222346665545668759998099999999999999872888799970678616799999987456310111221
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~sy~L~~v~~~~l~~~K~~~~~~l~~~~~~d~~~l~~Yn 320 (372)
T d1noya_ 241 IGRVKSKLLQNMYGSKEIYSIDGVSILDYLDLYKKFAFTNLPSFSLESVAQHETKKGKLPYDGPINKLRETNHQRYISYN 320 (372)
T ss_dssp TSCEEEEECCGGGCSCEEEEETTSEECCHHHHHHHHTCCCCSCCSHHHHHHHHHSCCCCCCSSCGGGHHHHHHHHHHHHH
T ss_pred CCCCCCEEEECCCCCCEEEEECCCEEEEEEHHHEECCCCCCHHHHHHHHEEECCCCCCCCCCHHHHHHHHHCHHHHHEEC
T ss_conf 26521001101356522564033148975101200002330024344310001146777742249999874925702201
Q ss_pred ---------------------------------------------------C
Q ss_conf ---------------------------------------------------9
Q 000711 482 ---------------------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------------------s 482 (1338)
-
T Consensus 321 i~D~~L~~~L~~kl~~i~~~~~la~~~gvp~~~v~~~~~~~~~~~~~~l~~~ 372 (372)
T d1noya_ 321 IIDVESVQAIDKIRGFIDLVLSMSYYAKMPFSGVMSPIKTWDAIIFNSLKGE 372 (372)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHTCCGGGGGCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 9988999999998757999999999989398993749999999999986259
|
| >d1vkpa_ d.126.1.6 (A:) Agmatine iminohydrolase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pentein, beta/alpha-propeller superfamily: Pentein family: Porphyromonas-type peptidylarginine deiminase domain: Agmatine iminohydrolase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=0 Score=28013.68 Aligned_cols=1 Identities=0% Similarity=0.172 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~tp~~~gfrmPaEwe~~~~~~l~wP~~~~~w~~~~~~~~~~~~~i~~~Ia~~e~V~vl~~~~~~~~~~~~~~~nV~~~~ 80 (372)
T d1vkpa_ 1 RESPAEHGYYMPAEWDSHAQTWIGWPERQDNWRHNALPAQRVFAGVAKAISKFEPVTVCASPAQWENARKQLPEDIRVVE 80 (372)
T ss_dssp CCCGGGGTCBCCCTTSCEEEEEECCCCCTTTSTGGGHHHHHHHHHHHHHHHTTSCEEEEECTTTHHHHHHHSCTTSEEEE
T ss_pred CCCHHHCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCEEEE
T ss_conf 97935549976898563615999868998621345556899999999997389849999797999999975746728999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~dD~W~RD~GPifv~~~~~~~~~~~~~~~~~vdf~FN~wG~k~~~~~~~~~~d~~~~~~ia~~~~~~~~~~~lvlEGG 160 (372)
T d1vkpa_ 81 MSMNDSWFRDSGPTFIVRKRPVKLSSLNRNIAGIDWNFNAWGGANDGCYNDWSHDLLVSRKILALERIPRFQHSMILEGG 160 (372)
T ss_dssp CCCSSCCHHHHSCEEEECCC-------CCSEEEEEEECCTTTHHHHSSBSCCTTHHHHHHHHHHHHTCCEEEEEEECCGG
T ss_pred CCCCCHHHHCCCCEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCC
T ss_conf 15898788614877998088642334678557860201366655555421345677999987412168744567166389
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~ie~dG~GtlltTe~clln~nRNP~~sk~~ie~~Lk~~lGv~~viwl~~g~~~~DdTdGHID~~arFi~~~til~~~~~d 240 (372)
T d1vkpa_ 161 SIHVDGEGTCLVTEECLLNKNRNPHMSKEQIEEELKKYLGVQSFIWLPRGLYGDEDTNGHIDNMCCFARPGVVLLSWTDD 240 (372)
T ss_dssp GEEECSSSEEEEEHHHHTCTTTCTTSCHHHHHHHHHHHHCCCEEEEESCCCTTCTTTTCCGGGTEEEEETTEEEEEECCC
T ss_pred CEEECCCCCEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHEEEECCCCEEEEEECCC
T ss_conf 77989996299756782077889998999999999986297559997670027988765500058971799079873288
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~y~~~~~~~~~L~~~~d~~g~~~~ii~lp~p~~~~~~~~~~~~~~~~~~~~~~~~g~~l~aSY~Nfli~N~~VivP 320 (372)
T d1vkpa_ 241 ETDPQYERSVEALSVLSNSIDARGRKIQVIKLYIPEPLYMTEEESSGITQDGEAIPRLAGTRLAASYVNFYIANGGIIAP 320 (372)
T ss_dssp TTSTHHHHHHHHHHHHHTCBCTTSCBCEEEEEECCSCCBCCHHHHHTSCCCSSBCCCCTTCBCCCCTTCCEEETTEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEC
T ss_conf 76855899999999999887505884317983034540003200145334666554568988655347999999999995
Q ss_pred ---------------------------------------------------C
Q ss_conf ---------------------------------------------------9
Q 000711 482 ---------------------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------------------s 482 (1338)
+
T Consensus 321 ~ygd~~~D~~A~~~l~~~fP~r~Vi~Id~~~~i~~~gG~iHCiT~q~Pa~~~ 372 (372)
T d1vkpa_ 321 QFGDPIRDKEAIRVLSDTFPHHSVVGIENAREIVLAGGNIHCITQQQPAEPT 372 (372)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTSEEEEETTTHHHHTTTCCTGGGEEEEECCCC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCCEEECCCCCCCCCC
T ss_conf 7989430799999999988898799827889998579853575777779999
|
| >d1qlpa_ e.1.1.1 (A:) Antitrypsin, alpha-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Serpins superfamily: Serpins family: Serpins domain: Antitrypsin, alpha-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28013.55 Aligned_cols=1 Identities=0% Similarity=-1.690 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~~Fa~~l~~~l~~~~~~~N~v~SP~si~~~La~l~~Ga~g~T~~el~~~L~~~~~~~~~~~~~~~~~~~~~~ 80 (372)
T d1qlpa_ 1 FNKITPNLAEFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEIPEAQIHEGFQELLRT 80 (372)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHCSSSCEEECHHHHHHHHHHHHTTCCHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 93220769999999999986129798299878999999999998546799999999709998778689999999999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~l~~~n~i~~~~~~~l~~~f~~~~~~~f~~~~~~~df~~~~~~~~~iN~wv~~~T~g~i~~~~~~~~~~t~l 160 (372)
T d1qlpa_ 81 LNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVF 160 (372)
T ss_dssp HSCSSCCCCEEEEEEEEEETTCCBCHHHHHHHHHTSCCEEEEECTTSHHHHHHHHHHHHHHHTTTSSCSCCCCCCTTCCE
T ss_pred HHCCCCCHHHHHHEEEEECCCCCCCHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
T ss_conf 53247614451010023316776478999999987275241455444699999999999998579875545678974155
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~lina~~f~~~W~~~F~~~~t~~~~F~~~~~~~~~V~mm~~~~~f~~~~~~~l~~~~~~lp~~~~~~~~il~~~~~~l~~ 240 (372)
T d1qlpa_ 161 ALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMMKRLGMFNIQHCKKLSSWVLLMKYLGNATAIFFLPDEGKLQH 240 (372)
T ss_dssp EEEEEEEECCCBSSCCCGGGCEEEEEESSSSCEEEEEEEEEEEEEEEEEETTTTEEEEEEEETTTEEEEEEEECTTCHHH
T ss_pred HHHHHHEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEECCCCEEEECCCCCCEEEEECCCCCCCEEEEEECCCCCHHH
T ss_conf 54323213043113566210445654036885489750000153111014667869995256777259999778679899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 l~~~L~~~~l~~~~~~~~~~~v~v~lPkF~i~~~~dl~~~L~~lGl~~~F~~~ad~~~i~~~~~l~vs~v~q~~~i~v~E 320 (372)
T d1qlpa_ 241 LENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSNGADLSGVTEEAPLKLSKAVHKAVLTIDE 320 (372)
T ss_dssp HHHHCCHHHHHHHHHCCCCEEEEEEEECEEEEEEEEHHHHTGGGTCCGGGSTTCCCTTTBSSSCCCCCEEEEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEECCHHHHHHHCCCHHHHCCHHHHCCCCCCCCCEEEEEEEEEEEEECC
T ss_conf 98764599999998735644789998789985211577877755946554225453176788981566378899999878
Q ss_pred ---------------------------------------------------C
Q ss_conf ---------------------------------------------------9
Q 000711 482 ---------------------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------------------s 482 (1338)
-
T Consensus 321 ~Gteaaa~t~~~~~~~s~~~~f~~drPFlf~I~~~~t~~iLf~G~v~~Pt~~ 372 (372)
T d1qlpa_ 321 KGTEAAGAMFLEAIPMSIPPEVKFNKPFVFLMIEQNTKSPLFMGKVVNPTQK 372 (372)
T ss_dssp CSSSSCCCCCCCCCCSSCCCEEECCSCEEEEEEETTTCCEEEEEEESCTTCC
T ss_pred CCCCHHHHHEEECCCCCCCCEEEECCCEEEEEEECCCCCEEEEEEECCCCCC
T ss_conf 8400323210102357899759926998999999899939999992799899
|
| >d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Polyketide synthase PKS18 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=0 Score=28009.87 Aligned_cols=1 Identities=0% Similarity=0.105 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~p~~~a~I~g~g~~~P~~~v~n~e~~~~~~~~~~~~~~~~~~~ri~~~tGI~~R~~~~~~~~~~~~~~~~~~~~ 80 (372)
T d1teda_ 1 AQLPPAPPTTVAVIEGLATGTPRRVVNQSDAADRVAELFLDPGQRERIPRVYQKSRITTRRMAVDPLDAKFDVFRREPAT 80 (372)
T ss_dssp CCCCCCCCCCEEEEEEEEEECCSCEEEHHHHHHHHHTC----CCTTHHHHHHHTSCCSEEECSSCTTSTTHHHHTTCSSC
T ss_pred CCCCCCCCCCEEEEEEEEEECCCEEECHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHCCCC
T ss_conf 99897999844899988996799178399999999860678177899999998359863514516543461445414887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~r~~~~~e~~~~la~~Aa~~aL~~ag~~~~dId~lI~~t~t~~~~P~~a~~v~~~LGl~~~~~~~~~~~~gC~g~~~a 160 (372)
T d1teda_ 81 IRDRMHLFYEHAVPLAVDVSKRALAGLPYRAAEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNA 160 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGEEEEEEEESSCCCSSCHHHHHHHHHTCCTTCEEEEEESCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHH
T ss_conf 88888877737999999999999997599988998899964689888668899876514687625766004674179999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 L~~A~~~l~sg~~~~~LVV~~E~~s~~~~~~d~~~~~~~~~lfGDGAaA~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (372)
T d1teda_ 161 LGTATNYVRAHPAMKALVVCIELCSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEPGKVVVRSSFSQLLDNTE 240 (372)
T ss_dssp HHHHHHHHHHSTTCEEEEEEEEECGGGCCCCSSHHHHHHHHHBCEEEEEEEEEEECTTSCCCTTCEEEEEEEEEECTTCT
T ss_pred HHHHHHHHHCCCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCC
T ss_conf 99999998559976521653112002104777613565655413632047750477645567750587035642168876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~did~~i~Hq~~~~i~~~i~~~Lgl~~ek~~~s~~~l 320 (372)
T d1teda_ 241 DGIVLGVNHNGITCELSENLPGYIFSGVAPVVTEMLWDNGLQISDIDLWAIHPGGPKIIEQSVRSLGISAELAAQSWDVL 320 (372)
T ss_dssp TSEEEEEETTEEEEEECTTHHHHHHHHHHHHHHHHHHHTTCCGGGCSCEEECCSCHHHHHHHHHHHTCCGGGGHHHHHHH
T ss_pred CCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 55456778776320014777999998889999987876399878742232247659999999998198978816568888
Q ss_pred ---------------------------------------------------C
Q ss_conf ---------------------------------------------------9
Q 000711 482 ---------------------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~GN~~sasip~~L~~~l~~g~~~~g~d~vll~~fG~G~s~~~~ll~~~~~ 372 (372)
T d1teda_ 321 ARFGNMLSVSLIFVLETMVQQAESAKAISTGVAFAFGPGVTVEGMLFDIIRR 372 (372)
T ss_dssp HHHCBCTHHHHHHHHHHHHHSCSSSSSSEEEEEEEEETTTEEEEEEEEECCC
T ss_pred HCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHEEECC
T ss_conf 4047748879999999999838878899889999995899589876325229
|
| >d1mkfa_ b.116.1.1 (A:) Viral chemokine binding protein m3 {Murid herpesvirus 4, MuHV-4 [TaxId: 33708]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Viral chemokine binding protein m3 superfamily: Viral chemokine binding protein m3 family: Viral chemokine binding protein m3 domain: Viral chemokine binding protein m3 species: Murid herpesvirus 4, MuHV-4 [TaxId: 33708]
Probab=100.00 E-value=0 Score=27943.68 Aligned_cols=1 Identities=0% Similarity=-0.527 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 hssgvstqsvdlsqikrgdeiqahcltpaetevtecagilkdvlsknlhelqglcnvknkmgvpwvsveelgqeiitgRL 80 (371)
T d1mkfa_ 1 HSSGVSTQSVDLSQIKRGDEIQAHCLTPAETEVTECAGILKDVLSKNLHELQGLCNVKNKMGVPWVSVEELGQEIITGRL 80 (371)
T ss_dssp CCSEEEECCCCTTTSTTHHHHHHHHSSSCCSSTHHHHHHHHHHHHHCTTGGGGGCSEEEEEEEECEEEGGGTEEEEEECC
T ss_pred CCCCCCCCCCCHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHCCCC
T ss_conf 98774343323888445425665207821003677778899987642887751430244468846569884125500676
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 P~Ps~~~~~~~~~vrVLV~AEs~tpee~P~~~~~A~~~m~T~~~~~~LsD~N~~F~s~~~~vW~i~i~k~~VD~~mLT~A 160 (371)
T d1mkfa_ 81 PFPSVGGTPVNDLVRVLVVAESNTPEETPEEEFYAYVELQTELYTFGLSDDNVVFTSDYMTVWMIDIPKSYVDVGMLTRA 160 (371)
T ss_dssp CCSSCCCCTTSCEEEEEEEEECCCCSSCCSSCCCEEEEEECSSCEEEECGGGEEEEETTEEEEEEEEEGGGSSTTCEEEE
T ss_pred CCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHEEEEEEEEEECCCCEEEEECCEEEEEEECCHHEECHHHHHHH
T ss_conf 77755787667648999995179987880788765441044554785024643787400279999646001122143355
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~FL~~~P~~k~T~mi~Y~~TFTWCGeigai~e~~~P~PS~~A~~PVC~~~~RY~~~kF~~~DGC~~Et~~~~~s~i~P~~ 240 (371)
T d1mkfa_ 161 TFLEQWPGAKVTVMIPYSSTFTWCGELGAISEESAPQPSLSARSPVCKNSARYSTSKFCEVDGCTAETGMEKMSLLTPFG 240 (371)
T ss_dssp EESSCCTTCEEEEEEEEETTEEEEEEEEEECTTSCCBCCSEEEEETTSSGGGGSSSTTTTTTTCCGGGTSCCEEECSCTT
T ss_pred HHHHHCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEECCCCCCCCCCCCCCEEECCCC
T ss_conf 67754767608998436565053403254368778997610038542004665347524136743000555640555578
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~P~~qa~mNTC~C~~KY~~~~L~~~~~i~i~~ia~~~~~~~P~YVm~~YF~St~~N~~~~s~~L~~C~~~mtsH~G~~~~ 320 (371)
T d1mkfa_ 241 GPPQQAKMNTCPCYYKYSVSPLPAMDHLILADLAGLDSLTSPVYVMAAYFDSTHENPVRPSSKLYHCALQMTSHDGVWTS 320 (371)
T ss_dssp SCSSCEEEESTHHHHHHCSSCCCCCSCEEEEEEECGGGCCSCEEEEEEEECCCCCCTTSCCCCEEEEEEEEEEETTEEEE
T ss_pred CCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCEEE
T ss_conf 98440303532058882476577334188876225233467406788750666667668898644899998743673013
Q ss_pred --------------------------------------------------C
Q ss_conf --------------------------------------------------9
Q 000711 482 --------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~s~QCP~~~~~G~~q~VL~~~~~pt~~~~iVGvsi~~eGQq~Ri~Y~Gdh 371 (371)
T d1mkfa_ 321 TSSEQCPIRLVEGQSQNVLQVRVAPTSMPNLVGVSLMLEGQQYRLEYFGDH 371 (371)
T ss_dssp CCCSSCCEEEEECSSTTEEEEEECGGGGGGEEEEEEEETTEEEEEESSCCC
T ss_pred EECCCCCEEEEECCCEEEEEEEECCCCCCCEEEEEEEECCCEEEEECCCCC
T ss_conf 313557556730676068999982466764056999974700021012589
|
| >d1r53a_ d.258.1.1 (A:) Chorismate synthase, AroC {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Chorismate synthase, AroC superfamily: Chorismate synthase, AroC family: Chorismate synthase, AroC domain: Chorismate synthase, AroC species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=27943.30 Aligned_cols=1 Identities=100% Similarity=-0.427 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 MnsfG~~lr~ttfGESHG~alg~vidG~PaG~~i~~~~I~~~L~RR~pG~~~~~t~R~E~D~veilSGv~~G~TtGsPI~ 80 (371)
T d1r53a_ 1 MSTFGKLFRVTTYGESHCKSVGCIVDGVPPGMSLTEADIQPQLTRRRPGQSKLSTPRDEKDRVEIQSGTEFGKTLGTPIA 80 (371)
T ss_dssp CCEECSSSEEEEECCTTSSEEEEEEECCCTTCBCCGGGTHHHHHTTCC------------CCCEECSSEETTEECSSCEE
T ss_pred CCCCCCCEEEEEEECCCCCEEEEEEECCCCCCEECHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCEECCCCEE
T ss_conf 98776534898415478884489980508588838999999996459999998866899984899243208978455207
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~I~N~d~~s~dy~~~~~~pRPGHAD~~~~~kyg~~d~~gggrsSaReTa~rvaaGaia~~~L~~~~gI~v~s~V~~IG~ 160 (371)
T d1r53a_ 81 MMIKNEDQRPHDYSDMDKFPRPSHADFTYSEKYGIKASSGGGRASARETIGRVASGAIAEKFLAQNSNVEIVAFVTQIGE 160 (371)
T ss_dssp EEEEC-----------------------------------------CCCHHHHHHHHHHHHHHHHTTCCEEEEEEEEETT
T ss_pred EEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECC
T ss_conf 88814532310010133324668741776764486533565415688899999999999999998489799999998611
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 i~~~~~~~d~~~~~~~~~~~~~~~~~~~~vrc~D~~~~~~m~~~I~~ak~~gDSlGGivev~~~gvP~GLG~p~fdkLda 240 (371)
T d1r53a_ 161 IKMNRDSFDPEFQHLLNTITREKVDSMGPIRCPDASVAGLMVKEIEKYRGNKDSIGGVVTCVVRNLPTGLGEPCFDKLEA 240 (371)
T ss_dssp EECCCCTTCHHHHHHHHHCCHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHTTCCCCEEEEEEEESCCTTCSBTTTBCHHH
T ss_pred EECCCCCCCHHHHHCCCHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCH
T ss_conf 77154345612332214465655553196107886888999999999972599755089999970589877720044145
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~LA~A~mSIpAVKgVEfG~GF~~a~~~GSe~nD~~~~~~~~g~~~~~tN~aGGi~GGiSnG~pi~~rva~KP~sSi~~~q 320 (371)
T d1r53a_ 241 MLAHAMLSIPASKGFEIGSGFQGVSVPGSKHNDPFYFEKETNRLRTKTNNSGGVQGGISNGENIYFSVPFKSVATISQEQ 320 (371)
T ss_dssp HHHHHHHTSTTBCCCEETTTTGGGGSCHHHHHCSBC--------CBCCCCSCSEETTEECSSCEEEEEEECCC-------
T ss_pred HHHHHHHCCCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCC
T ss_conf 88887742410025650456117645562247762205788864245688777546764896069999857810046877
Q ss_pred --------------------------------------------------C
Q ss_conf --------------------------------------------------9
Q 000711 482 --------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------s 482 (1338)
+
T Consensus 321 ~Tvd~~~~~~~~~~~gRhDpc~vpra~pV~Eam~alvlad~~L~~~~~d~~ 371 (371)
T d1r53a_ 321 KTATYDGEEGILAAKGRHDPAVTPRAIPIVEAMTALVLADALLIQKARDFS 371 (371)
T ss_dssp ----------------CCCSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 547757978776106988981726548999999999999999998516789
|
| >d1to6a_ c.141.1.1 (A:) Glycerate kinase GlxK {Neisseria meningitidis, (serogroup A) [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Glycerate kinase I superfamily: Glycerate kinase I family: Glycerate kinase I domain: Glycerate kinase GlxK species: Neisseria meningitidis, (serogroup A) [TaxId: 487]
Probab=100.00 E-value=0 Score=27941.32 Aligned_cols=1 Identities=0% Similarity=-1.756 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 MkiliApDsFKgslsA~ea~~ai~~g~~~~~p~~~~~~~P~aDGGEGt~dal~~~~~g~~~~~~v~gplg~~v~a~~~~~ 80 (371)
T d1to6a_ 1 MKIVIAPDSFKESLTAQQVAEAIKRGFQQSIADVECLLCPVGDGGEGTVDAIRHSLDLEEKCLQVTGSFGQKEVMRYFQK 80 (371)
T ss_dssp CEEEECCCCBTTTBCHHHHHHHHHHHHHHHCTTCEEEECCCCSSSTTHHHHHHTTSCCEEEEEEEECTTSSEEEEEEEES
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHCCCEEEEEEEECCCCCCEEEEEECC
T ss_conf 90999943888862899999999999998599988999730648543999999863997999999899998157899637
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~tAvIE~A~asGL~l~~~~~r~p~~~tT~G~GelI~~Al~~G~~~iilglGGSAT~DgG~G~L~ALG~~f~D~~g~~l~ 160 (371)
T d1to6a_ 81 EQLALFEVADLVGLGKIPLEKRNPLQIQTRGIGELIRHLISQEIKEIYIGVGGTASNDGGIGIAAGLGYQFYDEDGNALP 160 (371)
T ss_dssp SSEEEEETHHHHBGGGSCTTSCCTTSCCCHHHHHHHHHHHHTTCCEEEEEECSBCCCSTTHHHHHTTTCEEECTTSCBCC
T ss_pred CCEEEEHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCCEECCCCCCCC
T ss_conf 87543016663676303887777112246119999999997699769997158636616789999614536888999888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~g~~L~~i~~id~~~~~~~l~~v~~~ia~DV~npL~G~~GAa~vfgpQKGa~~~~v~~le~~l~~~a~~~~~~~~~~~g 240 (371)
T d1to6a_ 161 ACGQSLLNLASVSTENRYKIPEDVHIRILADVVSPLCGHQGATYTFGKQKGLDSTMFEVVDQAIQDFYEKVSPATLKLKG 240 (371)
T ss_dssp SSGGGGGTCCEEECSSCCCCCTTCEEEEEESCCCCSSSTTSHHHHHSGGGTCCGGGHHHHHHHHHHHHHHHCGGGGGCTT
T ss_pred CCCHHHHHHHCCCCCCCCCHHHCCEEEEEECCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCHHHCCCCC
T ss_conf 86153675002662368711342849999556765547878645650445887899999999999999984311015678
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~gaAGG~~~~l~~~l~a~~~~G~~~v~~~~~l~~~i~~aDlVITGEG~~D~QSl~GK~p~~va~~ak~~~pviai~G~v~ 320 (371)
T d1to6a_ 241 AGAGGGIAGGLCAFAQASIVSGIDTCLDLIDFDKKVSDVDLVIVGEGRLDRQSLAGKAPIGVAKRTPVGVPVVAICGSLV 320 (371)
T ss_dssp TTTTTTHHHHHHHHSCCEEEEHHHHHHHHTTHHHHTTTCSEEEECCSEECSTTTTTCHHHHHHTTSCTTCCEEEEESEEC
T ss_pred CCCHHHHHHHHHHHHCCEECCCHHHHHHHHCHHHHHCCCCEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 63102578999999588846509999988599978356998997887552321265767999999767998899977557
Q ss_pred --------------------------------------------------C
Q ss_conf --------------------------------------------------9
Q 000711 482 --------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~~~~Gi~~~~si~~~~~~l~~a~~~a~~~L~~~a~~i~r~l~~~~~ 371 (371)
T d1to6a_ 321 EDLPSLPFENIQAAFSILEKSEPLEDSLKNASLYLEHTASNIGHLLNMPKI 371 (371)
T ss_dssp TTCCCSSBTTEEEEEECCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 886678754962999758899999999998999999999999999842379
|
| >d1aj8a_ a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Citrate synthase superfamily: Citrate synthase family: Citrate synthase domain: Citrate synthase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=0 Score=27939.94 Aligned_cols=1 Identities=0% Similarity=-1.523 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~rGL~gv~v~~T~Is~idg~~G~L~YRG~~i~dLa~~~sfEeVa~LL~~G~lP~~~el~~f~~~l~~~~~lp~~~~~~~ 80 (371)
T d1aj8a_ 1 LAKGLEDVYIDQTNICYIDGKEGKLYYRGYSVEELAELSTFEEVVYLLWWGKLPSLSELENFKKELAKSRGLPKEVIEIM 80 (371)
T ss_dssp CCGGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHHCCHHHHHHHHHHSSCCCHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CCCCCCCCEEEEEECCEEECCCCEEEECCEEHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 99777998162686712768988799988769998646999999999977979899999999999997168988999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~p~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~a~~~~i~~~~~~~~~~~~~~~p~~~~~~a~~~l~~~ 160 (371)
T d1aj8a_ 81 EALPKNTHPMGALRTIISYLGNIDDSGDIPVTPEEVYRIGISVTAKIPTIVANWYRIKNGLEYVPPKEKLSHAANFLYML 160 (371)
T ss_dssp HHSCTTCCHHHHHHHHHHHHHHHSTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSCHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 86114641267777776410110100124310146788899999999999999999837998879860056899987652
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~g~~~~~~~~~~l~~~Lvl~aDHg~n~Stfa~r~vaSt~~d~~~a~~ag~~al~G~~hgga~~~~~~~~~~~~~~~~~~~ 240 (371)
T d1aj8a_ 161 HGEEPPKEWEKAMDVALILYAEHEINASTLAVMTVGSTLSDYYSAILAGIGALKGPIHGGAVEEAIKQFMEIGSPEKVEE 240 (371)
T ss_dssp HSSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTTTTHHHHHHHHHHHHCSGGGHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHH
T ss_conf 38878879999999999983677777620656654115775202888888871542011016799999985065420699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~v~~~l~~~~~i~GfGH~vy~~~DPRa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pNvd~~~~~l~~~lg~p 320 (371)
T d1aj8a_ 241 WFFKALQQKRKIMGAGHRVYKTYDPRARIFKKYASKLGDKKLFEIAERLERLVEEYLSKKGISINVDYWSGLVFYGMKIP 320 (371)
T ss_dssp HHHHHHHHTCCCTTBCCSSCSSCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCCBCTTTTHHHHHHTTTCC
T ss_pred HHHHHHHCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 99998624776544472211466606889999887630003568999999999987421798838188999999983998
Q ss_pred --------------------------------------------------C
Q ss_conf --------------------------------------------------9
Q 000711 482 --------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~lf~~~R~~G~~AH~~Eq~~~~~l~RP~~~YvG~~~~~~~~i~~r~ 371 (371)
T d1aj8a_ 321 IELYTTIFAMGRIAGWTAHLAEYVSHNRIIRPRLQYVGEIGKKYLPIELRR 371 (371)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHTTCCCCCCEEEECSCCCBCCCCGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCHHHCC
T ss_conf 566669999999999999999998679973855401699899987767659
|
| >d1c8ba_ c.56.1.2 (A:) Germination protease {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: HybD-like family: Germination protease domain: Germination protease species: Bacillus megaterium [TaxId: 1404]
Probab=100.00 E-value=0 Score=27939.89 Aligned_cols=1 Identities=0% Similarity=-1.225 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 m~~~~~l~~y~iRTDLAlEa~E~~~e~~~~~~~~~ei~GV~~~e~~~~~ikiT~V~I~e~Ga~~mgKp~G~YiTiEap~l 80 (371)
T d1c8ba_ 1 MEKELDLSQYSVRTDLAVEAKDIALENQPKPNNQSEIKGVIVKEKEEQGVKISMVEITEEGAEAIGKKKGRYVTLESVGI 80 (371)
T ss_dssp CCCCCCCCCCCCCCCCTTHHHHHHHHHCCC---------CCCSEEEEEEEETTEEEEEEEECHHHHTTTTSCCEEEEEEE
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCEEEEEEEECCHHHHHHCCCCCCEEEEECCCC
T ss_conf 98655521143537878988998865320113467668769888862986899999782689985899851799846877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~D~~~~~e~~~~v~a~~l~~l~~~~~~~~~~~vLVVGLGN~~VTPDALGP~vv~~l~VTRHL~~~~p~~~~~g~r~Vs 160 (371)
T d1c8ba_ 81 REQDTEKQEEAMEEVFAKELNFFIKSLNIPDDASCLVVGLGNLSVTPDALGPKAVDNLLITRHLFELQPESVQDGFRPVS 160 (371)
T ss_dssp CCCSSSSSSHHHHHHHHHHHHHHHHHTTCCTTCCEEEEECSCSSSGGGCHHHHHHTTCCCCHHHHHHSCCSSCSSCCCEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHEECCEEEEHHHHHHCCHHHCCCCCEEE
T ss_conf 75678899999999999999999863178988817999688877786563701113363343045547254507871256
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 aIaPGVmg~TGiET~EIIkgiVek~kPD~VIaIDALAaRs~~Rln~TIQIsDTGI~PGSGVGN~R~~l~~etLGVPVIAI 240 (371)
T d1c8ba_ 161 AIVPGVMGMTGIETSDIIFGVVKKVNPDFIIAIDALAARSIERVNATIQISDSGIHPGSGVGNKRKEISYETLGIPVIAI 240 (371)
T ss_dssp EECSGGGCCCSSCHHHHHHHHHHHHCCSEEEEEEEECCSSGGGSSSEEEEETTCBCSCSSSSCCCCBSSSCCC-------
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECHHHCCCHHHCCCEEEECCCCCCCCCCCCCCCCCCCHHHCCCCEEEE
T ss_conf 88587550344249999999987518989999601013752333564786677858887767555637987829988997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 GVPTVVdAatI~~Dtid~~~~~~~~~~~e~~~~s~~l~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ek~~Li 320 (371)
T d1c8ba_ 241 GIPTVVDAVSITSDTIDFILKHFGREMKEQGKPSKSLLPSGMTFGEKKKLTEDDLPNEEQRQTYLGMIGTLPDEEKRRLI 320 (371)
T ss_dssp --CCCEEEEEEECCEESCCCHHHHTTTTTCC---------------------------------CCCCSSCCCTTHHHHH
T ss_pred CCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 68806601998789999999987543201346531113332333422222222343112204688776246889999999
Q ss_pred --------------------------------------------------C
Q ss_conf --------------------------------------------------9
Q 000711 482 --------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------s 482 (1338)
-
T Consensus 321 ~EvL~P~~~~l~VTPKeID~~I~~~s~iIs~giN~ALhp~i~~e~~~~y~~ 371 (371)
T d1c8ba_ 321 HEVLAPLGHNLMVTPKEVDMFIEDMANVVAGGLNAALHHEVDQENFGAYTH 371 (371)
T ss_dssp HHHTCSSCTTEEEEETTHHHHHHHHHHHHHHHHGGGGSCCCCSCCCCSSCC
T ss_pred HHHHCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCC
T ss_conf 997572479655675738999999999999898898677888778764339
|
| >d1n7oa1 a.102.3.2 (A:170-540) Hyaluronate lyase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Chondroitin AC/alginate lyase family: Hyaluronate lyase-like catalytic, N-terminal domain domain: Hyaluronate lyase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=100.00 E-value=0 Score=27939.63 Aligned_cols=1 Identities=0% Similarity=-1.157 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~d~y~~lr~~w~~~~~G~~~~~~~d~~~~~~~~~l~~~a~~~~~~~~~~~~~~~lw~dl~~~~~~~~~~~~~~rL~~mA 80 (371)
T d1n7oa1 1 VKDTYTDRLDDWNGIIAGNQYYDSKNDQMAKLNQELEGKVADSLSSISSQADRIYLWEKFSNYKTSANLTATYRKLEEMA 80 (371)
T ss_dssp CCSHHHHHHHHHHHHHTCGGGCCTTCHHHHHHHHHHHHHHHHHHHHSCCSSSCSSSCGGGCCTTSTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 96489999999999863745677687899999999999999999872135677777789987775147999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~ay~~pgs~lY~d~~l~~~I~~al~~l~~~~y~~~~~~~gNWw~~~Ig~P~~l~~~lill~~~l~~~~~~~~~~~i~~~~ 160 (371)
T d1n7oa1 81 KQVTNPSSRYYQDETVVRTVRDSMEWMHKHVYNSEKSIVGNWWDYEIGTPRAINNTLSLMKEYFSDEEIKKYTDVIEKFV 160 (371)
T ss_dssp HHHTCTTSTTTTCHHHHHHHHHHHHHHHHHTSSTTCCCCSCHHHHHTHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHC
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf 99859998553699999999999999997089888888898303640758999999988311169999999999999867
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 p~p~~~~~~~~~~~~~TGaN~vd~a~~~i~~glL~~d~~~v~~a~~~i~~v~~~v~~gdG~~~DgSf~qH~~~~Y~G~YG 240 (371)
T d1n7oa1 161 PDPEHFRKTTDNPVKALGGNLVDMGRVKVIAGLLRKDDQEISSTIRSIEQVFKLVDQGEGFYQDGSYIDHTNVAYTGAYG 240 (371)
T ss_dssp CCTTEECTTSSSCEECCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGGSCCSSSSEECTTSCEEETTTEECTTTHH
T ss_pred CCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEECCCCCCEECCCCEECCCCEECCCCCH
T ss_conf 88212035677866064116999899999999986799999999999887741102688440377601257622167513
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~l~~~~~~~~~l~gT~~~~~~~~~~~l~~~i~~g~~~~~~~G~~~d~v~GR~ISR~~~~~~~~g~~~~~~~~~l~~~~ 320 (371)
T d1n7oa1 241 NVLIDGLSQLLPVIQKTKNPIDKDKMQTMYHWIDKSFAPLLVNGELMDMSRGRSISRANSEGHVAAVEVLRGIHRIADMS 320 (371)
T ss_dssp HHHHHHHHHHHHHHTTSSSCCCHHHHTHHHHHHHHTTGGGEETTEECGGGSGGGGGCTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 99999999999997799888897899999999995433010555015557886225788666414899999999985149
Q ss_pred --------------------------------------------------C
Q ss_conf --------------------------------------------------9
Q 000711 482 --------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~~~~~~iK~~i~~~~~~~~~~~~~~~~~~~~~~~ll~d~~i~~~p~ 371 (371)
T d1n7oa1 321 EGETKQRLQSLVKTIVQSDSYYDVFKNLKTYKDISLMQSLLSDAGVASVPR 371 (371)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSSCGGGGCCSHHHHHHHHHHHHCTTSCCCCC
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 999999999999999966875452225345789999999865898898998
|
| >d1f1sa1 a.102.3.2 (A:249-619) Hyaluronate lyase {Streptococcus agalactiae [TaxId: 1311]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Chondroitin AC/alginate lyase family: Hyaluronate lyase-like catalytic, N-terminal domain domain: Hyaluronate lyase species: Streptococcus agalactiae [TaxId: 1311]
Probab=100.00 E-value=0 Score=27938.38 Aligned_cols=1 Identities=0% Similarity=-0.127 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~d~y~~l~~~w~~~~~G~~~~d~~d~~~~~~~~~~~~~a~~~~~~~~~~~~~~~lw~dl~~~~~s~~~~~~~~rL~~mA~ 80 (371)
T d1f1sa1 1 EDNFTKLLDKWNDVTIGNYVYDTNDSNMQKLNQKLDETNAKNIEAIKLDSNRTFLWKDLDNLNNSAQLTATYRRLEDLAK 80 (371)
T ss_dssp CSHHHHHHHHHHHHHTCGGGCCTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCSCSCGGGCCTTSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 97699999999998638766786677899999999999999998612676656667899977752589999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 aY~~pgs~ly~d~~l~~~I~~aL~~l~~~~y~~~~~~~~~~NWW~~eIg~P~~l~~~lill~d~l~~~~~~~~~~~i~~~ 160 (371)
T d1f1sa1 81 QITNPHSTIYKNEKAIRTVKESLAWLHQNFYNVNKDIEGSANWWDFEIGVPRSITGTLSLMNNYFTDAEIKTYTDPIEHF 160 (371)
T ss_dssp HHTCTTSTTTTCHHHHHHHHHHHHHHHHHTSSTTCCCCTTSCHHHHHTHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHH
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 98499985547999999999999999983899876688989861123175799999998720015999999999999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~p~p~~~~~~~~~~~~~TGaN~vd~a~~~i~~glL~~d~~~v~~a~~~i~~v~~~v~~gdG~~~DgSfiqH~~v~Y~G~Y 240 (371)
T d1f1sa1 161 VPDAEYFRKTLVNPFKALGGNLVDMGRVKIIEGLLRKDNTIIEKTSHSLKNLFTTATKAEGFYADGSYIDHTNVAYTGAY 240 (371)
T ss_dssp CCCTTEESTTSSCCEECCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCCBSSSSEEBTTSCEEETTTEECTTTH
T ss_pred CCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCEECCCCHHCCCCEECCCCC
T ss_conf 78813322567886636522699999999999998289999999999876561103578723047661004670006762
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 G~~~l~~~~~~~~~l~gT~~~~~~~~~~~l~~~i~~g~~~~~~~g~~~~~v~GR~IsR~~~~~~~~g~~~~~~~~~l~~~ 320 (371)
T d1f1sa1 241 GNVLIDGLTQLLPIIQETDYKISNQELDMVYKWINQSFLPLIVKGELMDMSRGRSISREAASSHAAAVEVLRGFLRLANM 320 (371)
T ss_dssp HHHHHHHHHHHHHHHTTSTTCCCHHHHHHHHHHHHHTTGGGEETTEECGGGSGGGGGCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 39999999999999767988888789999999999700456357643565677622478876632799999999987334
Q ss_pred --------------------------------------------------C
Q ss_conf --------------------------------------------------9
Q 000711 482 --------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~~~~~~~vK~~i~~~~~~~~~~~~~~~~~~~~~~~ll~d~~I~~~p 371 (371)
T d1f1sa1 321 SNEERNLDLKSTIKTIITSNKFYNVFNNLKSYSDIANMNKLLNDSTVATKP 371 (371)
T ss_dssp CCSHHHHHHHHHHHHHHHHCCSSCGGGGCCSHHHHHHHHHHHHCTTSCCCC
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf 989999999999999984587644100645599999999985578888898
|
| >d1eg1a_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) {Trichoderma reesei, Endoglucanase I [TaxId: 51453]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Concanavalin A-like lectins/glucanases superfamily: Concanavalin A-like lectins/glucanases family: Glycosyl hydrolase family 7 catalytic core domain: Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) species: Trichoderma reesei, Endoglucanase I [TaxId: 51453]
Probab=100.00 E-value=0 Score=27934.75 Aligned_cols=1 Identities=0% Similarity=0.238 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 QQ~Gt~t~E~HP~ltwq~CT~~ggCt~~~g~vV~Danwrw~H~~~~~~c~~gn~~~~~lCpd~~tCa~nC~ldgaDY~~~ 80 (371)
T d1eg1a_ 1 EQPGTSTPEVHPKLTTYKCTKSGGCVAQDTSVVLDWNYRWMHDANYNSCTVNGGVNTTLCPDEATCGKNCFIEGVDYAAS 80 (371)
T ss_dssp CEECSSSCCCCCBCCEEEEETTTEEEEECCEEEECGGGSCEECTTCCBSEETTEECTTTCSSSHHHHHHCEECCCCTTTT
T ss_pred CCCCCCCCCCCCCCEEEECCCCCCCEEECCEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf 98887767548851447515899827723569980573202006986543388655234887566776246557763675
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 GVttsG~sltL~~~~~~~~~~~~~vGsRvYLl~~d~~Yqmf~Llg~EftFdVD~S~lpCGlNgALYfveM~adGg~s~~n 160 (371)
T d1eg1a_ 81 GVTTSGSSLTMNQYMPSSSGGYSSVSPRLYLLDSDGEYVMLKLNGQELSFDVDLSALPCGENGSLYLSQMDENGGANQYN 160 (371)
T ss_dssp TEEECSSEEEEESCEECSSSSEECCCCEEEEECTTSSBCCBCCTTSEEEEEECTTSCCTTEEEEEEEECCCTTTTCCSSC
T ss_pred CEEECCCCEEEEEEEECCCCCCCEECCEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCC
T ss_conf 26951884789999824766532023327997588837888726971688864478875223366665226568966667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~aGA~YGtGYCDAQCp~~~w~~g~~~~g~~G~CC~EmDIwEANs~A~a~TpH~C~~~~CD~~GC~~NpYR~g~~~fyG~G 240 (371)
T d1eg1a_ 161 TAGANYGSGYCDAQCPVQTWRNGTLNTSHQGFCCNEMDILEGNSRANALTPHSCTATACDSAGCGFNPYGSGYKSYYGPG 240 (371)
T ss_dssp CCGGGGTCCCCCTTCCBCSEETTEECTTCCBCCCCEEEEEEECSSCBCBEEECBCSSCBCSSCCCBCTTTTTCTTTSSTT
T ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 66663675323166873332136677578753035401015454134202434568741888867774555786211489
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~tVDT~k~fTVVTQF~t~~~t~~G~LtEIrR~YVQ~GkvI~n~~~~~~~~~~~~~~~~~ggl~~mg~al~rGmVLv~SlW 320 (371)
T d1eg1a_ 241 DTVDTSKTFTIITQFNTDNGSPSGNLVSITRKYQQNGVDIPSAQPGGDTISSCPSASAYGGLATMGKALSSGMVLVFSIW 320 (371)
T ss_dssp SSSCTTSCEEEEEEEEETTSSTTSCEEEEEEEEEETTEECCCSSTTCEEECCCSGGGGGTTTHHHHHHHHHCBEEEEEEE
T ss_pred CCCCCCCCEEEEEEEECCCCCCCCCEEEEEEEEEECCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEEE
T ss_conf 63026897389988665898664434477579997998902776566644454442336889999888608869999979
Q ss_pred --------------------------------------------------C
Q ss_conf --------------------------------------------------9
Q 000711 482 --------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------s 482 (1338)
.
T Consensus 321 dd~~~~M~WLDs~~~GpC~~~~g~p~~ve~~~p~a~V~~SNIKfG~I~ST~ 371 (371)
T d1eg1a_ 321 NDNSQYMNWLDSGNAGPCSSTEGNPSNILANNPNTHVVFSNIRWGDIGSTT 371 (371)
T ss_dssp ECTTTTTHHHHBGGGCSBCTTTTCHHHHHHHCTTCEEEEEEEEEESTTTCC
T ss_pred ECCCCCCEEECCCCCCCCCCCCCCHHHHHHCCCCCEEEEEECEECCCCCCC
T ss_conf 279998523058988888888898668623289977998727583787889
|
| >d1r85a_ c.1.8.3 (A:) Xylanase {Bacillus stearothermophilus, Xt6 [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Xylanase species: Bacillus stearothermophilus, Xt6 [TaxId: 1422]
Probab=100.00 E-value=0 Score=27932.28 Aligned_cols=1 Identities=0% Similarity=-0.327 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~p~l~~~~~~~f~~G~av~~~~l~~~~~~~~~~~~Fn~~t~eN~mKW~~iep~~G~~n~~~aD~~v~~a~~n 80 (371)
T d1r85a_ 1 KPHISALNAPQLDQRYKNEFTIGAAVEPYQLQNEKDVQMLKRHFNSIVAENVMKPISIQPEEGKFNFEQADRIVKFAKAN 80 (371)
T ss_dssp CCCCBGGGSCCHHHHHTTTCEEEEEECGGGGGCHHHHHHHHHHCSEEEESSTTSHHHHCSBTTBCCCHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHCCCEEEEECCHHHCCCHHHHHHHHHHCCEECCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 99664255664999860578387843755547988999999866900326467634124779925838899999999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 gi~vrGH~LvW~~~~P~W~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~I~~v~~rY~g~I~~WDVvNE~~~~~~~~r 160 (371)
T d1r85a_ 81 GMDIRFHTLVWHSQVPQWFFLDKEGKPMVNETDPVKREQNKQLLLKRLETHIKTIVERYKDDIKYWDVVNEVVGDDGKLR 160 (371)
T ss_dssp TCEEEEECSCCSTTCCGGGGBCTTSSBGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEESCBCTTSSBC
T ss_pred CCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCC
T ss_conf 99787767786233354101256666444445422333699999999999999999974897528998731106998733
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~g~dyi~~af~~A~~~~~p~~~L~~Ndy~~~~~~k~~~~~~~v~~l~~~g~pidgIG~Q~H~~~~~~~~~~i~ 240 (371)
T d1r85a_ 161 NSPWYQIAGIDYIKVAFQAARKYGGDNIKLYMNDYNTEVEPKRTALYNLVKQLKEEGVPIDGIGHQSHIQIGWPSEAEIE 240 (371)
T ss_dssp CCHHHHHHTTHHHHHHHHHHHHHHCTTSEEEEEESCTTSTTHHHHHHHHHHHHHHTTCCCCEEEECCEECSSSSCHHHHH
T ss_pred CCCHHHCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHH
T ss_conf 37522115858999999999986687546665145644440258999999999977997441433412367998889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~l~~~a~~Gl~i~ITElDV~~~~~~~~~~~~~~~~~~e~~~~QA~~y~~~~~~~~~~~p~v~git~WG~~D~~sW~~~~ 320 (371)
T d1r85a_ 241 KTINMFAALGLDNQITELDVSMYGWPPRAYPTYDAIPKQKFLDQAARYDRLFKLYEKLSDKISNVTFWGIADNHTWLDSR 320 (371)
T ss_dssp HHHHHHHHTTCEEEEEEEEECSSCSSCCCCSSGGGSCHHHHHHHHHHHHHHHHHHHHTGGGEEEEEESSSSTTSCGGGGG
T ss_pred HHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCC
T ss_conf 99999997399237866674167776445766542328999999999999999999638974599986898797446788
Q ss_pred --------------------------------------------------C
Q ss_conf --------------------------------------------------9
Q 000711 482 --------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pLlfD~~~~pKpAy~ai~d~~ 371 (371)
T d1r85a_ 321 ADVYYDANGNVVVDPNAPYAKVEKGKGKDAPFVFGPDYKVKPAYWAIIDHK 371 (371)
T ss_dssp CCEEECTTSCEECCTTSCCSEEETTCSCCCCSSBCTTSBBCHHHHHHHSCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC
T ss_conf 865435545533222222222235677788734689988977999986349
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=0 Score=27930.13 Aligned_cols=1 Identities=0% Similarity=-0.161 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~ 80 (371)
T d1k8kc_ 1 AYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 80 (371)
T ss_dssp CEEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred CCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEE
T ss_conf 95789998838999989999999994889899998889978999995588998889999799999999979993999862
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s 160 (371)
T d1k8kc_ 81 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 160 (371)
T ss_dssp ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
T ss_conf 03321100122322110001111111211000002576302544203343311100101112221111111111100013
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~ 240 (371)
T d1k8kc_ 161 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA 240 (371)
T ss_dssp TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE
T ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEE
T ss_conf 47679998401576431001221111111101124404766747898751233210000147860588641012100000
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (371)
T d1k8kc_ 241 SETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL 320 (371)
T ss_dssp CSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCC
T ss_pred CCCCCCEEEEECCCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCEE
T ss_conf 14665203654699979999819926787760898628872020676542124622001685065205871245566141
Q ss_pred --------------------------------------------------C
Q ss_conf --------------------------------------------------9
Q 000711 482 --------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~~~~~~~l~~~ 371 (371)
T d1k8kc_ 321 DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALKDLKIV 371 (371)
T ss_dssp SSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHHCTTCCCC
T ss_pred CCCCCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCHHHHCCEECC
T ss_conf 255569889999948998656799999189939999698684653587639
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=100.00 E-value=0 Score=27936.28 Aligned_cols=1 Identities=0% Similarity=-1.290 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 k~~~~~~p~~~~~~~~~v~~~l~~~~~~~G~~v~~fE~~~~~~~g~k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~ 80 (371)
T d2fnua1 1 KEFAYSEPCLDKEDKKAVLEVLNSKQLTQGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADRNEIITTP 80 (371)
T ss_dssp CCEESCCCCCCHHHHHHHHHHHTSSCCSSSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECS
T ss_pred CEECCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHCCCCCCCCEEECCC
T ss_conf 92067899899999999999981898668977999999999997829399982689999999999544579977052013
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~t~~a~~~ai~~~G~~pv~vDi~~~~~~~~~~~~~~~~~~t~avi~vh~~G~~~~~~~i~~~~~~~~i~lIEDaaqa~Ga 160 (371)
T d2fnua1 81 ISFVATANMLLESGYTPVFAGIKNDGNIDELALEKLINERTKAIVSVDYAGKSVEVESVQKLCKKHSLSFLSDSSHALGS 160 (371)
T ss_dssp SSCTHHHHHHHHTTCEEEECCBCTTSSBCGGGSGGGCCTTEEEEEEECGGGCCCCHHHHHHHHHHHTCEEEEECTTCTTC
T ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHCCCC
T ss_conf 44332200022058632123332223221012333046200001123445653334532121102220011314441586
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~G~~g~~~~~Sf~~~K~l~~g~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~ 240 (371)
T d2fnua1 161 EYQNKKVGGFALASVFSFHAIKPITTAEGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLS 240 (371)
T ss_dssp EETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHH
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 01030478643222335566534320154578762122200000012101122322222311256510033145555544
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 qL~~l~~~~~~R~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~~~~~L~~~gI~~~~~y~pl~~ 320 (371)
T d2fnua1 241 QLKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKFFTCKKLILESLHKRGILAQVHYKPIYQ 320 (371)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGGGGGHHHHHHHHHHTTEECBCCCCCGGG
T ss_pred HHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCC
T ss_conf 43211210334443310001212223333332233333333333322222221067999999999879984144765112
Q ss_pred --------------------------------------------------C
Q ss_conf --------------------------------------------------9
Q 000711 482 --------------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------------s 482 (1338)
=
T Consensus 321 ~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~~i~~~~~~~ 371 (371)
T d2fnua1 321 YQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESF 371 (371)
T ss_dssp SHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 898884266689989999984959896888889999999999999999748
|
| >d2dexx3 d.126.1.5 (X:294-663) Peptidylarginine deiminase Pad4, catalytic C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pentein, beta/alpha-propeller superfamily: Pentein family: Peptidylarginine deiminase Pad4, catalytic C-terminal domain domain: Peptidylarginine deiminase Pad4, catalytic C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27864.17 Aligned_cols=1 Identities=0% Similarity=0.305 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 APwimtpnt~~p~eV~v~~~~~n~~Fi~~v~~l~~~a~~~l~i~~~~~~~~DrW~QDe~E~GY~qaP~~~~pVvldspR~ 80 (370)
T d2dexx3 1 APWIMTPNTQPPQEVYACSIFENEDFLKSVTTLAMKAKCKLTICPEEENMDDQWMQDEMEIGYIQAPHKTLPVVFDSPRN 80 (370)
T ss_dssp CCCBCCCTTSCEEEEEECCCSSCHHHHHHHHHHHHHTTCEEEECCHHHHTTCCCTTTSEEEEEEEETTEEEEEEEECTTC
T ss_pred CCEEECCCCCCCEEEEEEEECCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCEEECCCCCCEEEECCCCCCCEEEECCCC
T ss_conf 98574689998648999861268999999999999729956746524578980300021130342689974558607220
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~gl~~fp~~~llg~dfG~~tr~~~~~~v~~lDSfGNLEvsPPvt~~Gk~YPlGRIliG~s~~~~~~gr~m~~~v~dFL~A 160 (370)
T d2dexx3 81 RGLKEFPIKRVMGPDFGYVTRGPQTGGISGLDSFGNLEVSPPVTVRGKEYPLGRILFGDSCYPSNDSRQMHQALQDFLSA 160 (370)
T ss_dssp SGGGGHHHHTTSBTTBEEEECSCSSSCCCGGGSGGGEEECCCEEETTEEETTCCEEEEECSSCCTTCCCCCHHHHHHHHH
T ss_pred CCCHHCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 33011527774178753387348877642023567734479862588426777488547788876545330899999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 Q~VQ~Pv~L~sdWL~VGHVDEf~~FvPa~~~kgfrlLlAsP~a~~~Ll~~~q~~GhG~a~~f~g~~~~~~~tI~~iL~d~ 240 (370)
T d2dexx3 161 QQVQAPVKLYSDWLSVGHVDEFLSFVPAPDRKGFRLLLASPRSCYKLFQEQQNEGHGEALLFEGIKKKKQQKIKNILSNK 240 (370)
T ss_dssp SGGGCCEEEECTTBSSCCGGGTEEEEECSSGGGEEEEEEEHHHHHHHHHHHHHTTCTTCEETTTCTTSCCEEHHHHHHCH
T ss_pred HCCCCCCEECCCHHHCCCCCCEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHCCH
T ss_conf 64599802305201057401017876369998538996388999999999987578646504655444221199986387
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~l~~~N~~~q~~Id~nr~iLKrELGLte~DIIdiP~LF~~~~~~~A~a~fP~mVNmlVlg~~L~iPkPfGP~inG~c~le 320 (370)
T d2dexx3 241 TLREHNSFVERCIDWNRELLKRELGLAESDIIDIPQLFKLKEFSKAEAFFPNMVNMLVLGKHLGIPKPFGPVINGRCCLE 320 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCEEECGGGCEEESSCCTTSCEEETTEEEEECCCCCEETTEEHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEHHH
T ss_conf 78999999998631789999987099867731253440545878621237641666874033067899788488630799
Q ss_pred -------------------------------------------------C
Q ss_conf -------------------------------------------------9
Q 000711 482 -------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------s 482 (1338)
-
T Consensus 321 e~v~~lleplGl~c~FiDD~~sYh~~~GeVHcgTNv~R~pf~~kWW~~~p 370 (370)
T d2dexx3 321 EKVCSLLEPLGLQCTFINDFFTYHIRHGEVHAGTNVRRKPFSFKWWNMVP 370 (370)
T ss_dssp HHHHHHHGGGTCEEEEECCTTTTGGGTCCTTTTEEEEECCCSSCGGGCCC
T ss_pred HHHHHHHCCCCCEEEEECCCHHHHHCCCEEEECCCCCCCCCCCCCCCCCC
T ss_conf 99999745478758995473788861772540464441788866702689
|
| >d2gx8a1 c.135.1.1 (A:4-373) Nif3-related protein BC4286 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NIF3 (NGG1p interacting factor 3)-like superfamily: NIF3 (NGG1p interacting factor 3)-like family: NIF3 (NGG1p interacting factor 3)-like domain: Nif3-related protein BC4286 species: Bacillus cereus [TaxId: 1396]
Probab=100.00 E-value=0 Score=27860.02 Aligned_cols=1 Identities=0% Similarity=-1.822 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~p~~~eii~~le~~~P~~lAe~wDnvGL~vg~~~~~V~~I~valD~t~~vi~eAi~~~adlIItHHPl~f~~~k~l~~~~ 80 (370)
T d2gx8a1 1 IPNGHEIISLFESMYPKHLAMEGDKIGLQIGALNKPVRHVLIALDVTEEVVDEAIQLGANVIIAHHPLIFNPLKAIHTDK 80 (370)
T ss_dssp CCBHHHHHHHHHHHSCGGGSCTTCCCEEEESCSSSBCCEEEEESSCCHHHHHHHHHHTCCEEEESSCSCCSCCSCCCTTS
T ss_pred CCCHHHHHHHHHHHCCHHHCCCCCCCEEEECCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCC
T ss_conf 99789999999986999671567987379689977649899997699999999997799999979987768964466788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~li~~~I~vys~HTnlD~~~~G~nd~La~~Lgl~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~agag~ 160 (370)
T d2gx8a1 81 AYGKIIEKCIKNDIAIYAAHTNVDVAKGGVNDLLAEALGLQNTEVLAPTYAEEMKKVVVFVPVTHAEEVRKALGDAGAGH 160 (370)
T ss_dssp HHHHHHHHHHHTTCEEEECCHHHHHSTTSHHHHHHHHTTCEEEEEEEEEEEEEEEEEEEEECHHHHHHHHHHHHHTTTTC
T ss_pred CHHHHHHHHHHCCCEEEEECCCHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHCCHHCCCCC
T ss_conf 05699999997897699932402105775799999984897533335555555542389817256666653000037875
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ig~y~~~~~~~~g~G~~~~~~~~~P~ig~~~~~~~~~e~~~e~~~~~~~~~~v~~al~~ahpy~~~~~~~~~~~~~~~~~ 240 (370)
T d2gx8a1 161 IGNYSHCTFSSEGTGTFVPQEGTNPYIGETGQLERVEEVRIETIIPASLQRKVIKAMVTAHPYEEVAYDVYPLDNKGETL 240 (370)
T ss_dssp BTTEEEEEEEEEEEEEEEEC-----------CCEEEEEEEEEEEEEGGGHHHHHHHHHHHSSSSSCCEEEEEEEEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHEEEECHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCC
T ss_conf 45632131013676541477788875676785664131430220427778889998887288610133421234655555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 G~Grig~l~~p~~l~~~~~~vk~~l~~~~vr~~g~~~~~I~~VAvc~GSG~s~i~~a~~~gaDv~ITGe~k~h~~~dA~~ 320 (370)
T d2gx8a1 241 GLGKIGYLQEEMTLGQFAEHVKQSLDVKGARVVGKLDDKVRKVAVLGGDGNKYINQAKFKGADVYVTGDMYYHVAHDAMM 320 (370)
T ss_dssp EEEEEEEEEEEEEHHHHHHHHHHHTTCSCCEEESCTTSEEEEEEEEEEECGGGHHHHHHTTCSEEEEECCCHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
T ss_conf 76459993786039999999998719982899588887423799973662789999987799899982886799999997
Q ss_pred -------------------------------------------------C
Q ss_conf -------------------------------------------------9
Q 000711 482 -------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------s 482 (1338)
-
T Consensus 321 ~gi~lId~GH~sE~~~~~~l~~~L~~~~~~~~~~i~v~~S~~~~dP~~~i 370 (370)
T d2gx8a1 321 LGLNIVDPGHNVEKVMKQGVQKQLQEKVDAKKLNVHIHASQLHTDPFIFV 370 (370)
T ss_dssp HTCEEEECCGGGGGHHHHHHHHHHHHHHHHTTCCCEEEECCCCCCCCCCC
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEC
T ss_conf 69979978832628999999999999750048856999954778976449
|
| >d2hgsa4 d.142.1.6 (A:3-201,A:304-474) Eukaryotic glutathione synthetase ATP-binding domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Eukaryotic glutathione synthetase ATP-binding domain domain: Eukaryotic glutathione synthetase ATP-binding domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27859.87 Aligned_cols=1 Identities=0% Similarity=-0.692 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~l~d~~~~~~l~~~a~dwa~~hGl~m~~~~~~~~~~~~~~aP~tL~Pspfpr~~F~~a~~vq~~~neL~~~vS~D 80 (370)
T d2hgsa4 1 TNWGSLLQDKQQLEELARQAVDRALAEGVLLRTSQEPTSSEVVSYAPFTLFPSLVPSALLEQAYAVQMDFNLLVDAVSQN 80 (370)
T ss_dssp CCSGGGGSCHHHHHHHHHHHHHHHHHTTCEEECSSCTTCCSSEEECCEESSCCEECHHHHHHHHHTHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCEEECCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99876588889999999999999997483654688888878345578685577687899999999999999999999737
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~fL~~~l~~~~~~D~Ft~~L~~i~~~v~~~g~~q~l~Lgl~RSDYMl~~~~~~~~~~KQVE~NTIS~sfggls~~v~~l 160 (370)
T d2hgsa4 81 AAFLEQTLSSTIKQDDFTARLFDIHKQVLKEGIAQTVFLGLNRSDYMFQRSADGSPALKQIEINTISASFGGLASRTPAV 160 (370)
T ss_dssp HHHHHHHHHTHHHHCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEECSSSCEEEEEEEEECSSCCCHHHHHHSHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHCCCCCCCCCCEEEEEECEEEEECCHHHHHHHHH
T ss_conf 99999999877414799999999999999617866259988200654167777665424786112330002176648999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 Hr~l~~~~~~~~~~~~~p~n~~~~~la~gla~a~~~y~~~KKvQQ~La~pgvLe~Fl~~~~~~~~~lr~tFa~ly~LD~~ 240 (370)
T d2hgsa4 161 HRHVLSVLSKTKEAGKILSNNPSKGLALGIAKAWELYGSTKKVQQELSRPGMLEMLLPGQPEAVARLRATFAGLYSLDVG 240 (370)
T ss_dssp HHHHHHHTTCHHHHTTSCCCCHHHHHHHHHHHHHHHHCCSHHHHHHTTSTTHHHHHSTTCHHHHHHHHHTCCCEEECSSS
T ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999862555421348899717999999999999974466778987498779987089889999999962314506887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~g~~a~~~a~~~p~~~VLKPQrEGGGnniyg~dI~~~L~~l~~~~e~~ayILMerI~P~~~~~~~vr~g~~~~~~~~iS 320 (370)
T d2hgsa4 241 EEGDQAIAEALAAPSRFVLKPQREGGGNNLYGEEMVQALKQLKDSEERASYILMEKIEPEPFENCLLRPGSPARVVQCIS 320 (370)
T ss_dssp HHHHHHHHHHHHSGGGEEEEESCCSSSCCBCHHHHHHHHHHHTTSGGGGGEEEEECCCCCCEEEEEECTTSCCEEEEEEE
T ss_pred CCCHHHHHHHHHCCHHEEECCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCEEECCCCC
T ss_conf 45269999767390227755632477651015488999997688676667899974378776865898896022056132
Q ss_pred -------------------------------------------------C
Q ss_conf -------------------------------------------------9
Q 000711 482 -------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------s 482 (1338)
.
T Consensus 321 ElGifG~~l~~~~~~~~N~~~G~LlRTK~~~~~EGGVaaG~g~lDSpylv 370 (370)
T d2hgsa4 321 ELGIFGVYVRQEKTLVMNKHVGHLLRTKAIEHADGGVAAGVAVLDNPYPV 370 (370)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEEEEETTCSSCCTTTTSCEEECCEEC
T ss_pred CCCCCEEEEECCCEEEEECCCEEEEECCCCCCCCCCEECCEECCCCCCCC
T ss_conf 22243799957987997165107886278988887810254206686649
|
| >d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Pepsin(ogen) species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=0 Score=27858.63 Aligned_cols=1 Identities=0% Similarity=-1.091 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~v~ipl~k~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~d~~Y~~~i~iGtP~Q~~~vi~DTGSs 80 (370)
T d3psga_ 1 LVKVPLVRKKSLRQNLIKDGKLKDFLKTHKHNPASKYFPEAAALIGDEPLENYLDTEYFGTIGIGTPAQDFTVIFDTGSS 80 (370)
T ss_dssp CEEEEEEECCCHHHHHHHTTCHHHHHHHCCCCGGGGTCTTSCCSSCCCTTGGGTTCCEEEEEEETTTTEEEEEEEETTCC
T ss_pred CEEEECCCCCCHHHHHHHCCCHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEECCCC
T ss_conf 98981510735889988728289998761146455305555576464033134687799999986898389999967989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~Wv~~~~C~~~~~~~~~~yd~~~Sst~~~~~~~~~~~Yg~Gs~~G~~~~d~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 160 (370)
T d3psga_ 81 NLWVPSVYCSSLACSDHNQFNPDDSSTFEATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAP 160 (370)
T ss_dssp CEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEEEEEEEESSSCEEEEEEEEEEEEETTEEEEEEEEEEECSCCCGGGGGCS
T ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEEEEEEEEEECEEEEEEEEEEEEECCCCEECCCC
T ss_conf 82897865787332566621787564423679718999578359999999778650101211389999603674021456
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~Gi~gl~~~~~~~~~~~~~~~~l~~~~~i~~~~fs~~l~~~~~~~g~l~~Gg~d~~~~~~~l~~~p~~~~~~w~v~~~~ 240 (370)
T d3psga_ 161 FDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDS 240 (370)
T ss_dssp CSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEEC-----CEEEEETCCCGGGBSSCCEEEECSEETTEEEEECE
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCEEECCCCCCHHCCCCEEEEEECCCCEEEEEEEE
T ss_conf 66644545674345688763453554054442226888605888771386378583330341158864135537998724
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 i~v~g~~~~~~~~~~aiiDSGTs~~~lp~~~~~~i~~~l~~~~~~~~~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~yi~ 320 (370)
T d3psga_ 241 ITMDGETIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSSIDSLPDIVFTIDGVQYPLSPSAYIL 320 (370)
T ss_dssp EESSSSEEECTTCEEEEECTTCCSEEEEHHHHHHHHHHTTCEECTTCCEECCGGGGGGCCCEEEEETTEEEEECHHHHEE
T ss_pred EEECCEEEECCCCCCEEEECCCCEEECCHHHHHHHHHHHCCEEECCCCEEEECCCCCCCCEEEEEECCEEEEECHHHEEE
T ss_conf 87299677048970179845886275789999999998587260389677744226778619999899999988599399
Q ss_pred -------------------------------------------------C
Q ss_conf -------------------------------------------------9
Q 000711 482 -------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------s 482 (1338)
|
T Consensus 321 ~~~~~c~~~~~~~~~~~~~~~~~ILG~~flr~~y~vfD~~~~~IGfAp~a 370 (370)
T d3psga_ 321 QDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA 370 (370)
T ss_dssp ECSSCEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred ECCCEEEEEEEECCCCCCCCCCEEECHHHHCCEEEEEECCCCEEEEEECC
T ss_conf 82992899999744589889719998896667999998999999899649
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=100.00 E-value=0 Score=27857.29 Aligned_cols=1 Identities=0% Similarity=-0.028 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~g~~ 80 (370)
T d2iida1 1 RNPLAECFQENDYEEFLEIARNGLKATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWY 80 (370)
T ss_dssp CCTTGGGGCCTTHHHHHHHHHHCSCCCSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEE
T ss_pred CCCHHHHCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCCCCE
T ss_conf 98557615881489999987647999999996999898889999999998789988999589988770678764877702
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~d~G~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (370)
T d2iida1 81 ANLGPMRLPEKHRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGK 160 (370)
T ss_dssp EESSCCCEETTCHHHHHHHHHTTCCEEEECSCCTTSEEEETTEEEEHHHHHHCGGGGCCCCCGGGTTCCHHHHHHHHTHH
T ss_pred ECCCCEEECCCCHHHHHHHHHHCCCCCEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 32575563276489999999838763101025786279618852220233322455433320355543467777887877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 240 (370)
T d2iida1 161 VVEELKRTNCSYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVDGMDKL 240 (370)
T ss_dssp HHHHHHHSCHHHHHHHHTTSBHHHHHHHTSCCCHHHHHHHHHHTTCGGGTTSBHHHHHHHHHHHTTCCCEEEETTCTTHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 88988742125666530100179999873255577887752100121001467776421001212566655404569999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~l~~~~g~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p~~~l~~i~~~p~l~~~~~~ai~~~~~~~ 320 (370)
T d2iida1 241 PTAMYRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVFTPY 320 (370)
T ss_dssp HHHHHHHTGGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTTSEEESCCCHHHHHHHHHCCCTT
T ss_pred HHHHHHHCCCCCCCCCEEEEEEEECCEEEEEEEECCCCEEEEEEEEEEECCCHHHHHHCCCCCCCCHHHHHHHHHCCCCC
T ss_conf 99999864876336864789888099189999964898179990078853898999607048999899999998337863
Q ss_pred -------------------------------------------------C
Q ss_conf -------------------------------------------------9
Q 000711 482 -------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~~~~~~~~g~v~~aGd~~~~~~~~~~~a~~sG~~aA~~i~~a~~~ 370 (370)
T d2iida1 321 QFQHFSDPLTASQGRIYFAGEYTAQAHGWIDSTIKSGLRAARDVNLASEN 370 (370)
T ss_dssp HHHHHHHHHHCCBTTEEECSGGGSSSSSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 10234504306668779963201378851099999999999999864249
|
| >d1rh9a1 c.1.8.3 (A:30-399) Beta-mannanase {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-mannanase species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=100.00 E-value=0 Score=27856.83 Aligned_cols=1 Identities=100% Similarity=0.869 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
.
T Consensus 1 ~~~v~~~g~~f~~nG~~~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~~k~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~ 80 (370)
T d1rh9a1 1 NNFVYTDGTHFALNGKSLYINGFNAYWLMYIAYDPSTRIKVTNTFQQASKYKMNVARTWAFSHGGSRPLQSAPGVYNEQM 80 (370)
T ss_dssp CCCCEEETTEEEETTEEECEEEEECTTHHHHHHSTTTTHHHHHHHHHHHHTTCCEEEEESSCSSSSSCSEEETTEECHHH
T ss_pred CCCEEEECCEEEECCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHHH
T ss_conf 99679989999999999999999526675011588999999999999998799199979856766765678887546788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 l~~ld~~l~~a~~~Gi~vi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~ 160 (370)
T d1rh9a1 81 FQGLDFVISEAKKYGIHLIMSLVNNWDAFGGKKQYVEWAVQRGQKLTSDDDFFTNPMVKGFYKNNVKVVLTRVNTITKVA 160 (370)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCBSSSSSSBHHHHHHHHHHTTCCCCCGGGGGTCHHHHHHHHHHHHHHHHCBCTTTCSB
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999986999999624443212687555410025777677521124899999999999999998641666765
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~v~~~~l~NEp~~~~~~~~~~~~~~~~~~~~~ir~~dp~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (370)
T d1rh9a1 161 YKDDPTILSWELINEPRCPSDLSGKTFQNWVLEMAGYLKSIDSNHLLEIGLEGFYGNDMRQYNPNSYIFGTNFISNNQVQ 240 (370)
T ss_dssp GGGCTTEEEEESCBSCCCTTCTTSHHHHHHHHHHHHHHHHHCCSSEEECCCCCCCCGGGGGGSGGGCCCSCCHHHHHTST
T ss_pred HCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 16870365300036666677543688999999999999965899749984221456544656777444565110235688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~D~~~~h~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kPv~i~EfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (370)
T d1rh9a1 241 GIDFTTIHMYPNQWLPGLTQEAQDKWASQWIQVHIDDSKMLKKPLLIAEFGKSTKTPGYTVAKRDNYFEKIYGTIFNCAK 320 (370)
T ss_dssp TCCCEEEECCHHHHSTTSCHHHHHHHHHHHHHHHHHHHHHHTSCEEEEECCCCTTSTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 66088753246765567760245667788999999999757975998453676789988889999999999999999998
Q ss_pred -------------------------------------------------C
Q ss_conf -------------------------------------------------9
Q 000711 482 -------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------s 482 (1338)
+
T Consensus 321 ~~~~~~G~~~W~~~~~~~~~~~dg~g~~~~d~~~t~~~~~~~~~~~~~~~ 370 (370)
T d1rh9a1 321 SGGPCGGGLFWQVLGQGMSSFDDGYQVVLQESPSTSRVILLQSLRLSKLS 370 (370)
T ss_dssp TTCSEEEEEESCBCCTTCGGGCCSCCBCGGGCHHHHHHHHHHHHHHTTCC
T ss_pred HCCCEEEEEEEEECCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 58980899982154788767799845866897228999999999986249
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=100.00 E-value=0 Score=27856.27 Aligned_cols=1 Identities=0% Similarity=-0.958 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (370)
T d3coxa1 1 TLADGDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKTDQPVSNFMGFG 80 (370)
T ss_dssp CCCTTCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCSCSCCTTSCSSCCSSSCCTTSBBSCSBCCCSSCSBTTBS
T ss_pred CCCCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98888899799978478999999999878793999967899887654533221113455443334544445544543456
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vGG~S~~~~~~~~r~~~~df~~~~~~~~~~~~~~~~y~~~e~~lgv~~~~~~~ 160 (370)
T d3coxa1 81 INKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEILPSVDSNEMYNKYFPRANTGLGVNNIDQAW 160 (370)
T ss_dssp CCCBCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCTTSCHHHHHHTHHHHHHHHHTCBCCCHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEECCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 67656535664445578862156420356555015865524897885223556873788999999999750876444776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~a~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~s~~~~~L~~a~~~g~~~i 240 (370)
T d3coxa1 161 FESTEWYKFARTGRKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGKKSLDKTYLAQAAATGKLTI 240 (370)
T ss_dssp HHHCGGGHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSCCSTTTTCSTTCCSSSBCCGGGTHHHHHHHTTCEEE
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 66788860889999999974986334664345565655444345531224522364443436837877899985898489
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~t~~~V~~I~~~~~~~~~V~v~~~~~~~~~~~~~~~~A~~VILaAGai~Tp~LLL~S~~~~~l~~~s~~vG~~~g~~~~~ 320 (370)
T d3coxa1 241 TTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKLLVSMKAQGHLPNLSSQVGEGWGVLLNK 320 (370)
T ss_dssp ECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEEEEEECSHHHHHHHHHHHHHHTTSSTTSCTTTTCCBSSCTTT
T ss_pred EECCCEEEEEECCCCEEEEEEEEECCCCCEEEEEEEECCEEEEEECHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCC
T ss_conf 73673899998499718999999588662322899989999995078885999996789897998877667885664575
Q ss_pred -------------------------------------------------C
Q ss_conf -------------------------------------------------9
Q 000711 482 -------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~g~~~~~~~~~~~d~~~~pg~~~~np~~t~~a~a~~~~~~~~~~~~ 370 (370)
T d3coxa1 321 ATDNFGRLPEYPGLYVVDGSLVPGNVGVNPFVTITALAERNMDKIISSDI 370 (370)
T ss_dssp TSCTTSBCTTSTTEEECSGGGSCSCCSSCSHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 55666544687774576334366766768205379998878998875029
|
| >d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Lipopolysaccharide core biosynthesis protein RfaG species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=27855.75 Aligned_cols=1 Identities=0% Similarity=-1.357 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~i~f~~~~y~p~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (370)
T d2iw1a1 1 IVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCPKAFELIQVPVKSHTNHGRNAEYYAWVQNHLKEHPA 80 (370)
T ss_dssp CEEEECSEECTTCHHHHHHHHHHHHHHHTTCCEEEEESEECSCCCTTCEEEECCCCCSSHHHHHHHHHHHHHHHHHHSCC
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 98999148899998999999999999977997999956787788886389986765544301158899999999986165
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (370)
T d2iw1a1 81 DRVVGFNKMPGLDVYFAADVCYAEKVAQEKGFLYRLTSRYRHYAAFERATFEQGKSTKLMMLTDKQIADFQKHYQTEPER 160 (370)
T ss_dssp SEEEESSCCTTCSEEECCSCCHHHHHHHHCCHHHHTSHHHHHHHHHHHHHHSTTCCCEEEESCHHHHHHHHHHHCCCGGG
T ss_pred CEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHCHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHCCCCCCE
T ss_conf 52531036723789987622441046630474200040000067889999742157469982479999999860999642
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 i~vi~~gv~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~gr~~~~Kg~~~li~a~~~l~~~~~~~~~~ii~g~~~~~~ 240 (370)
T d2iw1a1 161 FQILPPGIYPDRKYSEQIPNSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKPRK 240 (370)
T ss_dssp EEECCCCCCGGGSGGGSCTTHHHHHHHHTTCCTTCEEEEEECSCTTTTTHHHHHHHHHTSCHHHHHTEEEEEESSSCCHH
T ss_pred EEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHCCCCCCCCCCCCCCEEEECCCCCCCCC
T ss_conf 89997402222112467656666654304888663699998514554203332011123323322100000112222223
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PvI~s~~~g~~e~i~~~~~G~l~~~~ 320 (370)
T d2iw1a1 241 FEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEP 320 (370)
T ss_dssp HHHHHHHHTCGGGEEEESCCSCHHHHHHHCSEEEECCSCCSSCHHHHHHHHHTCCEEEETTSTTTHHHHHHTCEEEECSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCHHHHHCCCCCEEEECCC
T ss_conf 22222222222222223323344422233334443222234331133214577039993899718885279836998699
Q ss_pred -------------------------------------------------C
Q ss_conf -------------------------------------------------9
Q 000711 482 -------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------s 482 (1338)
-
T Consensus 321 ~d~~~la~~i~~ll~d~~~~~~~~~~ar~~~~~~~~~~~~~~~~~ii~g~ 370 (370)
T d2iw1a1 321 FSQEQLNEVLRKALTQSPLRMAWAENARHYADTQDLYSLPEKAADIITGG 370 (370)
T ss_dssp CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC
T ss_conf 99999999999997699999999999999999828547999999998485
|
| >d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Arginyl-tRNA synthetase (ArgRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=27856.33 Aligned_cols=1 Identities=0% Similarity=-0.460 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 p~p~~~~~i~vEf~SpN~~kplHvGHlRs~iiGd~laril~~~G~~V~r~nyigD~G~Qi~~l~~~~~~~~~~~~~~~~~ 80 (370)
T d1iq0a2 1 PFPRRPGVVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKY 80 (370)
T ss_dssp CCCCEEEEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCH
T ss_pred CCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 99999986999863899998864311361799999999999769979899847976499999999999856153346544
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~y~~~~~~~~~~~~~~~~~e~~~~le~~~~~~~~~~~l~~~~~~l~~l~v~fD~~~~Es~l~~~~~~~~~i~~l 160 (370)
T d1iq0a2 81 DHFAGRAYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARYDLLVWESDIVRAGLLQKALALL 160 (370)
T ss_dssp HHHHHHHHHHHHHCTTTGGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHTTCCCSEEEEHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECEEEEECCCCCCCCHHHHHHHH
T ss_conf 56644324666542788888899999999987666999999999888865411331101012202322364146667666
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~ga~~~d~~~~~~~~~~~~~vl~ksDG~~tY~t~DiAy~~~K~~~~~~~~~~~~~~~~~~~i~i~~ 240 (370)
T d1iq0a2 161 EQSPHVFRPREGKYAGALVMDASPVIPGLEDPFFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGLRTSA 240 (370)
T ss_dssp TTSTTEECCSSSTTTTCEEEECTTTSCSCSCCEEEEECTTSCBCHHHHHHHHHHHHTTSSCCCEEEECCCSSCTTCEEEE
T ss_pred HHCCCEEECCCCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCEEECCHHHHHHHHCCCCCCCCEECCCCCCCCEEEEEC
T ss_conf 52361441246665447983374355566674003685267725862079987601033222110024467663267632
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~d~~~~~~~~d~~iyVvd~~Q~~h~~~v~~~~~~~g~~~~~~~~~hv~~g~v~~~g~kMStR~G~~v~l~dll~ea~~~a 320 (370)
T d1iq0a2 241 PEGEAYTPKAEETINVVDVRQSHPQALVRAALALAGYPALAEKAHHLAYETVLLEGRQMSGRKGLAVSVDEVLEEATRRA 320 (370)
T ss_dssp EEEEECCCCCSEEEEEEESSSCCCHHHHHHHHHHTTCHHHHTTEEEEEECCEEETTBCSCC----CCBHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHCEEEEEEEEEECCCCCCCCCCCCEEEHHHHHHHHHHHH
T ss_conf 43443202356788887124047999999999981998034111257899983378534356887458999999999999
Q ss_pred -------------------------------------------------C
Q ss_conf -------------------------------------------------9
Q 000711 482 -------------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~r~~~~~~~~~~a~~vgi~avky~~L~~~~~~~~~Fd~d~~lsfe 370 (370)
T d1iq0a2 321 RAIVEEKNPDHPDKEEAARMVALGAIRFSMVKTEPKKQIDFRYQEALSFE 370 (370)
T ss_dssp HHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHSCTTSCEEECHHHHHCSS
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHEEHHHHHCCCCCCCEECHHHHCCCC
T ss_conf 99998508982008999987616632225864589998568789921479
|
| >d1itua_ c.1.9.7 (A:) Renal dipeptidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Renal dipeptidase domain: Renal dipeptidase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27787.53 Aligned_cols=1 Identities=100% Similarity=0.770 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~e~A~~lh~~~pViD~H~D~~~~l~~~~~~~~~~~~~~~~~~~~ghvDlprlr~Ggv~~q~faifv~~~~~~~~~~~ 80 (369)
T d1itua_ 1 DFFRDEAERIMRDSPVIDGHNDLPWQLLDMFNNRLQDERANLTTLAGTHTNIPKLRAGFVGGQFWSVYTPCDTQNKDAVR 80 (369)
T ss_dssp CHHHHHHHHHHTTSCEEEEEECHHHHHHHHHTTCTTSGGGCTTTCCSSSCCHHHHHHTTEEEEEEEECCCGGGTTTTHHH
T ss_pred CHHHHHHHHHHCCCCEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEECCCCCCCHHHHH
T ss_conf 94789999996489989834328999998733333444344355888865799999669987999998078777759999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~al~~id~~~~~~~~~~d~~~~~~s~~di~~a~~~gkiavil~iEg~~~l~~dl~~L~~~y~lGvR~i~Lt~n~~N~~a~ 160 (369)
T d1itua_ 81 RTLEQMDVVHRMCRMYPETFLYVTSSAGIRQAFREGKVASLIGVEGGHSIDSSLGVLRALYQLGMRYLTLTHSCNTPWAD 160 (369)
T ss_dssp HHHHHHHHHHHHHHHCTTTEEECCSHHHHHHHHHHTCEEEEEEEECGGGGTTCHHHHHHHHHTTEEEEESCSSSCCSSBC
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCC
T ss_conf 99999999999999688768973157899998743672788414345311256799999986495598722687887777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~g~~~~~~~GLt~~G~~~V~emn~lGmiiDlSH~s~~~~~dv~~~s~~PviaSHsn~ral~~h~RNl~De~l~aI 240 (369)
T d1itua_ 161 NWLVDTGDSEPQSQGLSPFGQRVVKELNRLGVLIDLAHVSVATMKATLQLSRAPVIFSHSSAYSVCASRRNVPDDVLRLV 240 (369)
T ss_dssp BGGGGGTSSCCSSSSBCHHHHHHHHHHHHHTCEEECTTBCHHHHHHHHHHCSSCCEESSCCBTTTSCCTTSBCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHCCCCCEEECCCCHHHHHHHHCCCCHHHHHHH
T ss_conf 75433577876678867678999998641481666487868899988612577456424026654033338998999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 a~~GGviGi~~~~~fl~~~~~~~~~~~~~hi~~~~~l~G~dhVgiGsDfdg~~~~p~gl~~~~~~p~l~~~L~~rG~se~ 320 (369)
T d1itua_ 241 KQTDSLVMVNFYNNYISCTNKANLSQVADHLDHIKEVAGARAVGFGGDFDGVPRVPEGLEDVSKYPDLIAELLRRNWTEA 320 (369)
T ss_dssp HHHTCEEEECCCHHHHTSSSCCBHHHHHHHHHHHHHHHCGGGEEECCCTTSCSCCCBTCSSTTCHHHHHHHHHHTTCCHH
T ss_pred HHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHH
T ss_conf 96597488850564212330236899999999999870952179865678999998777787788999999998699999
Q ss_pred ------------------------------------------------C
Q ss_conf ------------------------------------------------9
Q 000711 482 ------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------s 482 (1338)
|
T Consensus 321 ~i~ki~g~N~lRv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (369)
T d1itua_ 321 EVKGALADNLLRVFEAVEQASNLTQAPEEEPIPLDQLGGSCRTHYGYSS 369 (369)
T ss_dssp HHHHHHTHHHHHHHHHHHHHCCSSSCCCCCCCCGGGCCSSSCCCTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCC
T ss_conf 9999998869999999999998613876789984572765441578899
|
| >d1rwha1 a.102.3.2 (A:4-372) Chondroitinase AC {Arthrobacter aurescens [TaxId: 43663]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Chondroitin AC/alginate lyase family: Hyaluronate lyase-like catalytic, N-terminal domain domain: Chondroitinase AC species: Arthrobacter aurescens [TaxId: 43663]
Probab=100.00 E-value=0 Score=27784.14 Aligned_cols=1 Identities=0% Similarity=-0.460 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~d~~~lr~rw~~~l~g~~~~~~~d~~~~~~l~~l~~~a~~~~~~~~~~~~~~~lW~dl~~~~sa~~~~~~~rl~~mA 80 (369)
T d1rwha1 1 PGAAEFAALRNRWVDQITGRNVIQAGDPDFAKAITALNNKAADSLAKLDAAAGRTSVFTDLSLAKDAEMVTTYTRLSQLA 80 (369)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCCTTCHHHHHHHHHHHHHHHHHHHTBCCCTTCSCSBTTCCTTSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 96679999999999997488766657878999999999999999997335677666688887886278999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~Ay~~pgs~~y~d~~l~~~I~~al~~l~~~~~~~~~~~~gNWW~~eIg~P~~l~~~liLl~d~l~~~~~~~~~~~i~~f~ 160 (369)
T d1rwha1 81 TAWATPTAAVFGDAAVLAAIKAGLADANTLCYNDRKEEVGNWWSWEIGVPRALADAMVLLHAELSAAERTAYCAAIDHFV 160 (369)
T ss_dssp HHHTSTTSTTTTCHHHHHHHHHHHHHHHHHTSSTTCCCCSCHHHHHTHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf 99819999542699999999999999997188789999999101532858999999998502179899999999999866
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 pdp~~~~~~~~~~~~~tGaNrvd~a~~~i~~glL~~d~~~v~~a~~~i~~v~~~vt~gdGf~~DgSf~qH~~~~Y~G~YG 240 (369)
T d1rwha1 161 PDPWLQFPPKRGKITSVGANRVDLCQGIIIRSLAGEDPTKLNHAVAGLSQVWQYVTSGDGIFRDGSFIQHSTTPYTGSYG 240 (369)
T ss_dssp SCTTEESCGGGCCEECCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHGGGGGSCBSSSSEEBTTSCEEETTTEECTTTHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCEECCCCCH
T ss_conf 78643346667752252009999999999999980899999999998641122245897423477636304442166425
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~l~~~~~~~~~l~gT~~~~~~~~~~~l~~~i~~g~~~~i~~g~m~~~v~GR~ISR~~~~~~~~g~~~~~~~~~la~~~ 320 (369)
T d1rwha1 241 VVLLTGLSKLFSLLGGTAFEVSDPTRSIFFDAVEGSFAPVMINGAMADAVRGRSISREANTGYDLGASAIEAILLLARAM 320 (369)
T ss_dssp HHHHHHHHHHHHHHTTSTTCCCCGGGHHHHHHHHHTTGGGEETTEECGGGSGGGGGCTTSCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99999999999997799898887899999999995003462577116667887100788776168999999999998519
Q ss_pred ------------------------------------------------C
Q ss_conf ------------------------------------------------9
Q 000711 482 ------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~~~~~~vk~~i~~d~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~ 369 (369)
T d1rwha1 321 DPATAARWRGLCAGWIARDTYRPILNSASVPRTALVKQLEATGVAPVAE 369 (369)
T ss_dssp CHHHHHHHHHHHHHHHHTCCSSCTTTTCCHHHHHHHHHHHHHTCCCCCC
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
T ss_conf 9999999999999998718765544676522689999986067783889
|
| >d2ewoa1 d.126.1.6 (A:2-370) Agmatine iminohydrolase {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pentein, beta/alpha-propeller superfamily: Pentein family: Porphyromonas-type peptidylarginine deiminase domain: Agmatine iminohydrolase species: Streptococcus mutans [TaxId: 1309]
Probab=100.00 E-value=0 Score=27782.98 Aligned_cols=1 Identities=0% Similarity=-0.526 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~tp~~~g~rmPaEwep~~~~~l~wP~~~~~w~~~~~~~~~~~~~i~~~ia~~e~V~~~v~~~~~~~a~~~~~~~ 80 (369)
T d2ewoa1 1 AKRIKNTTPKQDGFRMPGEFEKQKQIWMLWPWRNDNWRLGAKPAQKAFLEVAEAISEFEPVSLCVPPLQYENALARVSEL 80 (369)
T ss_dssp CCEECSSCHHHHTCCCCCTTSCEEEEEECCCCCTTTSSGGGHHHHHHHHHHHHHHHTTSCEEEEECGGGHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHC
T ss_conf 98567899301387878872416069998789986303578999999999999985898699998938999999998536
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~i~~~~~~~dD~W~RD~GP~~v~~~~g~~~~vdf~FN~wG~k~~~~~~~~~~d~~~~~~ia~~~~~~~~~~~~lvlE 160 (369)
T d2ewoa1 81 GSHNIRIIEMTNDDAWIRDCGPTFLVNDKGDLRAVDWEFNAWGGLVDGLYFPWDQDALVARKVCEIEGVDSYKTKDFVLE 160 (369)
T ss_dssp TCCSEEEEECCCSSCCTTTSSCEEEECSSSCEEEEEEECCTTTTTTTCSSSCCTTHHHHHHHHHHTTTCCEEEEEEEECC
T ss_pred CCCCEEEEEECCCCHHHHCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEC
T ss_conf 77777999924797566134645898588988998533367765445545522457799999998736543466354875
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 GG~ie~dG~GtlltT~~cll~~nRNp~~s~~~ie~~L~~~LGv~~viwL~~g~~~DdTdGHID~~arFi~~~tvl~~~~~ 240 (369)
T d2ewoa1 161 GGSIHVDGEGTVLVTEMCLLHPSRNPHLTKEDIEDKLKDYLNCVKVLWVKDGIDPYETNGHIDDVACFIRPGEVACIYTD 240 (369)
T ss_dssp GGGEEEETTTEEEEEHHHHTSTTSCTTSCHHHHHHHHHHHHCCSEEEEECCCSCTTTTSSCSTTTEEEEETTEEEEBCCC
T ss_pred CCCEEECCCCCEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEECC
T ss_conf 89789889985896445621667899989999999999985994799844766666667773206997289849997148
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 d~~~~~y~~~~~~~~~L~~~~d~~G~~~~i~~lp~p~~~~~~~~~~~~~~~~~~~~~~~g~~l~aSY~Nfli~N~~VivP 320 (369)
T d2ewoa1 241 DKEHPFYQEAKAAYDFLSQQTDAKGRPLKVHKMCVTKEPCYLQEAATIDYVEGSIPREEGEMAIASYLNFLIVNGGIILP 320 (369)
T ss_dssp CTTSTTHHHHHHHHHHHHTCBCSSSCBCEECCBCBCSSCEECCCGGGSCCCCC-------CEECCBTTCCEEETTEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEE
T ss_conf 87786579999999999987875699753885368975443333455444467664568988654236789999999990
Q ss_pred ------------------------------------------------C
Q ss_conf ------------------------------------------------9
Q 000711 482 ------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------s 482 (1338)
-
T Consensus 321 ~yg~~~D~~Al~~l~~~fP~r~Vv~i~~~~l~~~gG~iHCiT~q~Pa~~ 369 (369)
T d2ewoa1 321 QYGDENDQLAKQQVQEMFPDRKVVGVRTEEIAYGGGNIHCITQQQPATL 369 (369)
T ss_dssp CCSCTTHHHHHHHHHHHSTTSEEEEECTHHHHTTSCCTTTTCEEEECCC
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHCCCCCEECCCCCCCCC
T ss_conf 1798678999999998888997999844698864975247164536899
|
| >d2heka1 a.211.1.1 (A:1-369) Hypothetical protein aq_1910 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: HD-domain/PDEase-like superfamily: HD-domain/PDEase-like family: HD domain domain: Hypothetical protein aq 1910 species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=0 Score=27781.68 Aligned_cols=1 Identities=0% Similarity=-1.125 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~k~~~D~i~g~i~~~~~~~rii~s~~fqRL~~~~Ql~~~~~v~p~a~htR~~HSLgV~~lar~l~~~l~~~~~~~v~~A 80 (369)
T d2heka1 1 MIKEFSDPLYGFVRVGEAGLRLIDSFPFQRLRYVKQLGLAYLVFPSAQHTRFEHSLGVYHITERICESLKVKEKELVKLA 80 (369)
T ss_dssp CEEEEEETTTEEEEEEHHHHHHHTSHHHHGGGGSBTTTTGGGTSTTCCCBHHHHHHHHHHHHHHHHHHHTCTTHHHHHHH
T ss_pred CCEEEECCCCCCEECCHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 95377359988886488999982997670345773478552338999566211998999999999999743328899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~LlHDiGh~PFsH~gE~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~d~ 160 (369)
T d2heka1 81 GLLHDLGHPPFSHTTEVLLPRERSHEDFTERVIKETEIYEILKQDYSHEDIERLVRITLGKPEDEEEKLLSEIITGEFGS 160 (369)
T ss_dssp HHTTTTTCCSSSSCHHHHSTTSSSCCCHHHHHHHHSHHHHHHHTTSCHHHHHHHHHHHHTCCSSHHHHHHHHHHHSTTCH
T ss_pred HHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCHH
T ss_conf 99860265022204666620345520468998740179999998521236999999863246675204588775265101
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 Drldyl~rd~~~~~~~~g~~~~~~l~~~~~~~~~~l~~~~~~~~~~e~~~~~R~~m~~~vy~h~~~~~~~~~l~~~~~~~ 240 (369)
T d2heka1 161 DRMDYLRRDAYFCGVSYGFFDYDRLISTLRVYENKVVVDESGLRALENFLISRYFMYVQVYFHKVVRILSIHLVEFLKKL 240 (369)
T ss_dssp HHHHHHHHHHHHHTCCSSCCCCHHHHHTEEEETTEEEEEGGGHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 03433344465506767730199998877653400013563499999999999999899955478899999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~d~~~~~~l~D~~i~~~L~~~~~~~~~~~~i~~R~l~K~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 320 (369)
T d2heka1 241 ISQEDFTDINNFLRLNDAFVISELFKRKAFREDFERIFQRKHFKTLLSTENYEKFSETKERLLEKFPQEKVRFDEVEKEV 320 (369)
T ss_dssp TSSCCCSSTHHHHTCCHHHHHHHHHHCSTTHHHHHHHHSSCCCEEEEEESCHHHHHHHHHHHHHHSCGGGEEEEEEEECS
T ss_pred HHCCCCCCHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 86589788999973369999999985802519999998340252020167788899999999987442144401343445
Q ss_pred ------------------------------------------------C
Q ss_conf ------------------------------------------------9
Q 000711 482 ------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~i~i~~~~~l~~l~~~S~lv~~L~~~~~~riy~~~~v~e~~~~~~~ 369 (369)
T d2heka1 321 YGGNIYVLSSEGLKKAHELSPLIASLKPIKLYRIYVDRQLWEKARSELK 369 (369)
T ss_dssp CCSCCEEEETTEEEEHHHHCHHHHHCCCEEEEEEEECTTTHHHHHHTTC
T ss_pred CCCCEEEECCCCEEEHHHHCHHHHHHHHHHHEEEECCHHHHHHHHHHHC
T ss_conf 6777489639855583563699998688666378889999999998629
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Probab=100.00 E-value=0 Score=27780.35 Aligned_cols=1 Identities=0% Similarity=-0.759 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~g~~P~~l~~~y~~~~~~tG~gvtVaIid~G~~~~~~~Dl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 80 (369)
T d1ga6a_ 1 AGTAKGHNPTEFPTIYDASSAPTAANTTVGIITIGGVSQTLQDLQQFTSANGLASVNTQTIQTGSSNGDYSDDQQGQGEW 80 (369)
T ss_dssp CCBCCCBCGGGHHHHTTCTTSCCEEEEEEEEEEESBCHHHHHHHHHHHHHTTCCCCCEEEEECSCTTSCCCBCHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCEEE
T ss_conf 98887749899999739998889887489999617865678899999986599989977651799888888887721133
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~ld~~~~~gvAp~a~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~Vis~S~g~~~~~~~~~~~~~~~~~a~~~a~~~G 160 (369)
T d1ga6a_ 81 DLDSQSIVGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQG 160 (369)
T ss_dssp HHHHHHHHHHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 24500001015686499999957999865699999999999758986244244322457886168999999999999789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 i~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ggg~s~~~ 240 (369)
T d1ga6a_ 161 QTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTLYTTSAGAYSNETVWNEGLDSNGKLWATGGGYSVYE 240 (369)
T ss_dssp CEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEEEECTTSCEEEEEECEEEECTTSCEEECCCEEEEEE
T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 78998179876557678898766543434665688402333100135777765442021356787755335789866656
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~P~~~~~~~~~~~~r~~pdv~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~vAGvvALi~~a~~~~~G~~n~~ly~~~~~ 320 (369)
T d1ga6a_ 241 SKPSWQSVVSGTPGRRLLPDISFDAAQGTGALIYNYGQLQQIGGTSLASPIFVGLWARLQSANSNSLGFPAASFYSAISS 320 (369)
T ss_dssp ECCGGGGGSTTSCSEEEECSEEEECCGGGCEEEEETTEEEEECSHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCEECCEECCCCCCCCEEEECCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 67543334422578852201102467875048726854666578753113899999999863567668768899998864
Q ss_pred ------------------------------------------------C
Q ss_conf ------------------------------------------------9
Q 000711 482 ------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------s 482 (1338)
=
T Consensus 321 ~~~~~~di~~g~n~~~~~~~~a~~G~d~~tG~G~~d~~~l~~~~~s~~~ 369 (369)
T d1ga6a_ 321 TPSLVHDVKSGNNGYGGYGYNAGTGWDYPTGWGSLDIAKLSAYIRSNGF 369 (369)
T ss_dssp CGGGEECCCSCBSSSTTCSCBCCSSSBTTTBTCEECHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCHHHHHHHHHHCCC
T ss_conf 7665204445888888887678678988956724379999999986699
|
| >d1laxa_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: D-maltodextrin-binding protein, MBP species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=27779.88 Aligned_cols=1 Identities=0% Similarity=0.138 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 k~~eg~ltvW~~~~~~~~~~~~~~~~fe~~~gv~V~v~~~~~~~~kl~~~~~~g~~pDv~~~~~~~~~~~~~~g~l~~L~ 80 (369)
T d1laxa_ 1 KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTDPKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEIT 80 (369)
T ss_dssp CCCTTSEEEECCTTSCHHHHHHHHHHHHHHHCCCEEEECCTTHHHHHHHHHTTTCSCSEEEEEGGGHHHHHHTTCBCCCC
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCCC
T ss_conf 98630899996798316999999999865219879999688799999999866999869998908899999879967588
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~dG~~ygiP~~~~~~~~~ynkd~~~~~p~Tw~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (369)
T d1laxa_ 81 PDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPL 160 (369)
T ss_dssp CCHHHHTTBCHHHHHHTEETTEECSEEEEEECCEEEEETTTCSSCCSBGGGHHHHHHHHHTTTCEEECCCCSSGGGTHHH
T ss_pred HHHHHHHHHHHHHHHHCEECCEEEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
T ss_conf 44533455468898653489999897510220135775000112110057899876442037875632577764004899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~ 240 (369)
T d1laxa_ 161 IAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKV 240 (369)
T ss_dssp HHHTTCEEEEECSSCEEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHHTC
T ss_pred HHHHCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCEEEEECCHHHHHHHHCCCC
T ss_conf 98717720002355544454455778999999999998752764444552677765515775687416577540011245
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~p~~~~~~~~~~~~~~~~~i~~~s~~~~~A~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (369)
T d1laxa_ 241 NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAAT 320 (369)
T ss_dssp CEEEECCCBBTTBCCCCEEEEEEEEEBTTCSCHHHHHHHHHHTTSSHHHHHHHHHHSCCCEESBHHHHHHHTTSHHHHHH
T ss_pred CCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHHH
T ss_conf 61376314555677655556435664057855899999999864899999999973898865133200444439489999
Q ss_pred ------------------------------------------------C
Q ss_conf ------------------------------------------------9
Q 000711 482 ------------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------------s 482 (1338)
+
T Consensus 321 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~s~~eal~~~~~~it 369 (369)
T d1laxa_ 321 MENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTRIT 369 (369)
T ss_dssp HHHHHHSEECCCSTTHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
T ss_conf 9999608007888568999999999999998399999999999998519
|
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin motor Ncd (non-claret disjunctional) species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=100.00 E-value=0 Score=27709.36 Aligned_cols=1 Identities=0% Similarity=-1.424 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gnIkV~vRvRP~~~~E~~~~~~~~~~~~~~~v~~~~ 80 (368)
T d2ncda_ 1 LRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQS 80 (368)
T ss_dssp CCSSSGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEEEECCCCGGGTTSCBCEEEEETTTEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHCCCCCCEEEECCCCEEEECC
T ss_conf 91589999999999999999999999999999999874899756997999990789901027898579957998699706
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~v~plv~~vl~G~n~ti~aYGqtGSGKT~Tm~G~~~~~Giipr~~~~Lf 160 (368)
T d2ncda_ 81 IDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLF 160 (368)
T ss_dssp SCHHHHTTTCCCEEECSEEECTTCCHHHHHTTTHHHHHHHHTTCEEEEEEECSTTSSHHHHHTEETTEECHHHHHHHHHH
T ss_pred CCCCCCCCCCCEEEECCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEECCCCCCCCHHHHHHHHHH
T ss_conf 88655677686466778587999986214999998898775036513773115787560671366644344667999876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~v~vS~~EIyne~i~DLL~~~~~~~~~~~~~d~~~~~~v~g~~~~~v~~~~~~~~~l~~g~~~r~~~ 240 (368)
T d2ncda_ 161 DSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATA 240 (368)
T ss_dssp HHHHHHHTTSCEEEEEEEEEEESSSCEEETTCSSCCCCCEEECTTCTTCEEETTCCCEEECSHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHCCCCCCCEEEEEEEEEECCEEECCCCCCCCCCCCEEECCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf 45443202455526899999886560201256421354311302666442334430220477788999999987511244
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~t~~n~~ssrSh~i~~i~v~~~~~~~~~~~~s~l~~VDLAGse~~~~~~~~~E~~~IN~SL~aL~~vi~aL~~~~~~iPy 320 (368)
T d2ncda_ 241 STAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPY 320 (368)
T ss_dssp SSSCTTTTTTCEEEEEEEEEEECTTSCCEEEEEEEEEECCCCCCC----------CTTHHHHHHHHHHHHHHTTCSCCCG
T ss_pred CCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 22146545554327899999976698856765444422010233102321024552026499999999998658998997
Q ss_pred -----------------------------------------------C
Q ss_conf -----------------------------------------------9
Q 000711 482 -----------------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------------s 482 (1338)
|
T Consensus 321 R~SkLT~lL~dsLggns~t~mI~~isp~~~~~~eTl~TL~fa~rak~~ 368 (368)
T d2ncda_ 321 RNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSC 368 (368)
T ss_dssp GGSHHHHHHGGGSSSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 578889998985599870999999798735499999999999997569
|
| >d1r8ga_ d.128.1.3 (A:) Carboxylate-amine ligase YbdK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Glutamine synthetase/guanido kinase superfamily: Glutamine synthetase/guanido kinase family: Glutamate-cysteine ligase family 2 (GCS2) domain: Carboxylate-amine ligase YbdK species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=27706.74 Aligned_cols=1 Identities=0% Similarity=-1.091 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~f~~~~~~tiGvE~E~~lvd~~~~~~~~~~~~ll~~~~~~~~~~~i~~El~~~qiEl~t~p~~~~~e~~~~l~~~~~~ 80 (368)
T d1r8ga_ 1 LPDFHVSEPFTLGIELEMQVVNPPGYDLSQDSSMLIDAVKNKITAGEVKHDITESMLELATDVCRDINQAAGQFSAMQKV 80 (368)
T ss_dssp CCCCCCCCTTCEEEEEEEEEEETTTTEECSCCHHHHTTTSSSCSSSEEEECSSSSEEEEECCSBSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999983489876543679987667757999997222246886310467766998077779999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~g~~P~~~~~~~~~~~~~ry~~~~~~~~~~~~~~~~~g~hv~~~~~d~~~~~~~~~~~~~~~p~l~ 160 (368)
T d1r8ga_ 81 VLQAATDHHLEICGGGTHPFQKWQRQEVCDNERYQRTLENFGYLIQQATVFGQHVHVGCASGDDAIYLLHGLSRFVPHFI 160 (368)
T ss_dssp HHHHHHHTTCEEECCSBCSSCCC----------------CCGGGGCSCCBCEEEEEEECSSHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99987655875244575212672215577508999998742707888764256031168999999999999999868998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 aL~anSP~~~G~~tg~~s~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vRp~~~~~~iEiR~~D 240 (368)
T d1r8ga_ 161 ALSAASPYMQGTDTRFASSRPNIFSAFPDNGPMPWVSNWQQFEALFRCLSYTTMIDSIKDLHWDIRPSPHFGTVEVRVMD 240 (368)
T ss_dssp HHHCCBCEETTEECSCSBCGGGGGTTSTTCSSCCCCSSHHHHHHHHHHHTTSSSCSSGGGCCCSEEEETTTTEEEEEEEE
T ss_pred HHHCCCHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCC
T ss_conf 88528663358677886775267750876565430001120799999998556445677056316876466742124789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~p~~~~~~~~aa~~~~l~~~l~~~~~~~~~~~~~~~~~~n~~~aar~Gl~~~l~~~~~~~~~~~~~~~~~Ll~~~~~~l 320 (368)
T d1r8ga_ 241 TPLTLSHAVNMAGLIQATAHWLLTERPFKHQEKDYLLYKFNRFQACRYGLEGVITDPHTGDRRPLTEDTLRLLEKIAPSA 320 (368)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHCCCCCCGGGGTTHHHHHHHHHHHGGGSEEECTTTCCEEEHHHHHHHHHHHSHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHH
T ss_conf 99988999997568887888998617877640448999999998876144411000689967689999999999999999
Q ss_pred -----------------------------------------------C
Q ss_conf -----------------------------------------------9
Q 000711 482 -----------------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------------s 482 (1338)
+
T Consensus 321 ~~lg~~~~l~~l~~~v~~g~t~A~~lr~~~~~~gsl~~~v~~~~e~~~ 368 (368)
T d1r8ga_ 321 HKIGASSAIEALHRQVVSGLNEAQLMRDFVADGGSLIGLVKKHCEIWA 368 (368)
T ss_dssp HHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHTTCCHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHC
T ss_conf 978898999999999982999999999999818999999999998739
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=27705.61 Aligned_cols=1 Identities=0% Similarity=-0.061 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~k~ltfdDVlLvP~~sti~srdVdls~~~~~~~~l~iPIiss~MDtV~~~~mA~~la~~Gglgvlhr~~~~ 80 (368)
T d2cu0a1 1 KFVEKLEKAIKGYTFDDVLLIPQATEVEPKDVDVSTRITPNVKLNIPILSAAMDTVTEWEMAVAMAREGGLGVIHRNMGI 80 (368)
T ss_dssp CHHHHHHTCCCCCCGGGEEECCCCCSSCSTTCBCCEEEETTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECSSSCH
T ss_pred CHHHHHHHHHHCCCCCCEEEECCCCCCCHHHCEEEEEEECCCCCCCCEEECCCCCCCCHHHHHHHHHCCCEEEECCCCCH
T ss_conf 96788998876288000898589776766563653796188314889895798776888999999978996575064898
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 e~~~~~v~~v~~~e~~~~~~~d~~~~~~v~~~~~~~~~~r~~~l~~aGvd~ivID~A~Gh~~~~i~~lK~ir~~~~~~vI 160 (368)
T d2cu0a1 81 EEQVEQVKRVKRAEKYKNAVRDENGELLVAAAVSPFDIKRAIELDKAGVDVIVVDTAHAHNLKAIKSMKEMRQKVDADFI 160 (368)
T ss_dssp HHHHHHHHHHHTCCCCTTCCBCTTSCBCCEEEECTTCHHHHHHHHHTTCSEEEEECSCCCCHHHHHHHHHHHHTCCSEEE
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 99999887433444324101366763799932572778999999983998798437542012456666554121043132
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 aGNVaT~e~~~~l~gaD~VkVGIG~Gs~CTTr~~tGvG~Pq~sAi~e~~~~~~~~~~~iiADGGi~~~Gdi~KAla~GAd 240 (368)
T d2cu0a1 161 VGNIANPKAVDDLTFADAVKVGIGPGSICTTRIVAGVGVPQITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGAD 240 (368)
T ss_dssp EEEECCHHHHTTCTTSSEEEECSSCSTTBCHHHHTCCCCCHHHHHHHHHHHHHHHTCEEEEESCCCSHHHHHHHHHTTCS
T ss_pred ECCCCCHHHHHHHHCCCCEEECCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHEEEEECCC
T ss_conf 21136799997652276214445675555332112423434789999999875249706845887867721135664132
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~VMlG~~lAg~~Espg~~~~~~g~~~k~~~Gm~S~~a~~~~~~~~~~~~~~~~~~~~~~EG~~~~v~~~G~~~~~l~~l~ 320 (368)
T d2cu0a1 241 AVMLGNLLAGTKEAPGKEVIINGRKYKQYRGMGSLGAMMKGGAERYYQGGYMKTRKFVPEGVEGVVPYRGTVSEVLYQLV 320 (368)
T ss_dssp EEEESTTTTTBTTCCSCEEEETTEEEEEEECTTSHHHHTC----------CCCCSCSSCCBCEEEEECCBCHHHHHHHHH
T ss_pred EEECCCHHCCCCCCCCCEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHH
T ss_conf 35305311142235773671599270135676642211357752223555333444378832885078888899999999
Q ss_pred -----------------------------------------------C
Q ss_conf -----------------------------------------------9
Q 000711 482 -----------------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------------s 482 (1338)
-
T Consensus 321 gglrs~m~y~G~~~l~e~~~~~~f~~vt~a~~~E~~~h~~~~~~~~~~ 368 (368)
T d2cu0a1 321 GGLKAGMGYVGARNIRELKEKGEFVIITHAGIKESHPHDIIITNEAPN 368 (368)
T ss_dssp HHHHHHHHHTTCSBHHHHHHHCCEEECCHHHHHHHSCCSSCCSCCCCC
T ss_pred HHHHHHHHHCCCCCHHHHHHCCEEEEECCCCCCCCCCCCEEEECCCCC
T ss_conf 999999876286509998509789999954142467877366356899
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=0 Score=27705.57 Aligned_cols=1 Identities=0% Similarity=0.105 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~g~a~~~~a~~~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~~~a~spDg~~i~ 80 (368)
T d1mdah_ 1 EKSKVAGSAAAASAAAASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFA 80 (368)
T ss_dssp CCCCCCSHHHHHHHTTCCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTCEEEECTTSSCEE
T ss_pred CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCCEECCCCCEEE
T ss_conf 94121200000123445679866645589876126972045788621799708998377888578777513989998899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~ 160 (368)
T d1mdah_ 81 LASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQ 160 (368)
T ss_dssp EEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEE
T ss_pred EECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEECCCCCCCCEEECCCCCEEEEEECCCCEEEEEECCCCCEEE
T ss_conf 97556764010356786999989999383064378542102468864058878998999996899859999899893867
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~ 240 (368)
T d1mdah_ 161 LTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPA 240 (368)
T ss_dssp EEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCS
T ss_pred EEECCCCCEECCCCCCEEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEECCCCCCCEEEEECCCCEEEEEECC
T ss_conf 86046752374699823999948998899982689626665303111356664660101558689993489779996069
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a 320 (368)
T d1mdah_ 241 AGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAII 320 (368)
T ss_dssp SCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEE
T ss_pred CCEEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEECCCCEEEEEECCCCCEEEEECCCCCEEEEE
T ss_conf 93699760246543045540127883568871799879998358973340588649999899994868955899651799
Q ss_pred -----------------------------------------------C
Q ss_conf -----------------------------------------------9
Q 000711 482 -----------------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------------s 482 (1338)
+
T Consensus 321 ~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P~~l~~~~~a 368 (368)
T d1mdah_ 321 AAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQNEA 368 (368)
T ss_dssp ECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEECCCCC
T ss_pred ECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEECCC
T ss_conf 998999899999489996999989999799998799998789973489
|
| >d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Glutamine synthetase/guanido kinase superfamily: Glutamine synthetase/guanido kinase family: Glutamine synthetase catalytic domain domain: Glutamine synthetase, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=27704.30 Aligned_cols=1 Identities=0% Similarity=-0.293 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~dPR~iLkr~~~~l~~~G~~~~~~~g~E~EF~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (368)
T d1f52a2 1 DRDPRSIAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPGVKGGYF 80 (368)
T ss_dssp TTCHHHHHHHHHHHHHHHTSCSEEEEEEEEEEEEESEEEEEEETTEEEEEEECTTCGGGGGCCCTTCCCCCCCCTTCCSS
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEECEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 98879999999999997699870378854288999421035576777565577322456887666887787655577615
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~~~E~~~~gq~Ei~~~~~~~l~aAD~~~~~k~~ik~iA~~~Gl~atFmpKP~ 160 (368)
T d1f52a2 81 PVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPKPM 160 (368)
T ss_dssp BCTTSSCCHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTCEEECCSCSS
T ss_pred EEECCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCC
T ss_conf 53001107889999999888622570564223456784322078786577889999999999999997436334741568
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~GsG~HiH~Sl~~~~~n~~~~~~~~~lS~~~~~fiaGll~~~~~~~al~~PtvNSYkRl~~~~~aP~~~~Wg~~NR~ 240 (368)
T d1f52a2 161 FGDNGSGMHCHMSLAKNGTNLFSGDKYAGLSEQALYYIGGVIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSARNRS 240 (368)
T ss_dssp TTSCCCCEEEEEEEEETTEETTBCSSGGGBCHHHHHHHHHHHHTHHHHHHHHSCSGGGGGTSSSCSSCCCEEEEESSCTT
T ss_pred CCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEEECCCCCC
T ss_conf 89877532589874159985656555556489999999999986699899977996077652477768743452367655
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 a~iRi~~~~~~~~~riE~R~~da~aNPYL~lAa~laagl~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~lP~sl~eAl~a 320 (368)
T d1f52a2 241 ASIRIPVVASPKARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHPGEPMDKNLYDLPPEEAKEIPQVAGSLEEALNA 320 (368)
T ss_dssp EEEECCCCSCGGGCCEEECCCCTTSCHHHHHHHHHHHHHHHHHTTCCCCSCCCSCCSSSCCSSTTCCCBCCSSHHHHHHH
T ss_pred CCEEECCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHCHHCCCCCHHHHHHH
T ss_conf 31464025788662478447880177789999999976542421589999777872448976762320151379999999
Q ss_pred -----------------------------------------------C
Q ss_conf -----------------------------------------------9
Q 000711 482 -----------------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------------s 482 (1338)
-
T Consensus 321 l~~d~~~~~a~~~lGe~~v~~y~~~K~~E~~~~~~~vt~wE~~~Yl~~ 368 (368)
T d1f52a2 321 LDLDREFLKAGGVFTDEAIDAYIALRREEDDRVRMTPHPVEFELYYSV 368 (368)
T ss_dssp HHHTCHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHTTC
T ss_pred HHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
T ss_conf 964978788765156999999999999999999679999999741689
|
| >d1pyya4 e.3.1.1 (A:264-631) Penicillin-binding protein 2x (pbp-2x), transpeptidase domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta-lactamase/transpeptidase-like superfamily: beta-lactamase/transpeptidase-like family: beta-Lactamase/D-ala carboxypeptidase domain: Penicillin-binding protein 2x (pbp-2x), transpeptidase domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=100.00 E-value=0 Score=27703.46 Aligned_cols=1 Identities=100% Similarity=0.371 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 Tid~~lQ~~~e~~l~~~~~~~~~~~~~~vv~d~~TG~IlAmas~P~~dpn~~~~~~~~~~~~n~a~~~~~~PGStfKp~~ 80 (368)
T d1pyya4 1 TISSPLQSFMETQMDAFQEKVKGKYMTATLVSAKTGEILATTQRPTFDADTKEGITEDFVWRDILYQSNYEPGSAFKVMM 80 (368)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHCCSEEEEEEEETTTTEEEEEEEESCCCTTTCTTCCTTCCCCCHHHHCCBCCGGGGHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 93979999999999999997089569999999999939999967988854236766103443265517668863054699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~aaaLe~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vtl~~al~~S~N~~~~~l~~~lg~~~~~~~~~~~G~~~ 160 (368)
T d1pyya4 81 LAAAIDNNTFPGGEVFNSSELKIADATIRDWDVNEGLTGGRMMTFSQGFAHSSNVGMTLLEQKMGDATWLDYLNRFKFGV 160 (368)
T ss_dssp HHHHHHTTCCCTTCEEECCCEEETTEEECCEETTTEECCSCEEEHHHHHHTTCHHHHHHHHHHHCHHHHHHHHHHTTTTS
T ss_pred HHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCC
T ss_conf 99864023332222222101102444432345544334880456999997532454143210358244789998753487
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~e~~g~~p~~~~~~~~~~~~G~~~~~tplq~a~aya~iANgG~~~~P~~i~~i~d~~g~~~~~~~~~~~~~~i 240 (368)
T d1pyya4 161 PTRFGLTDEYAGQLPADNIVNIAQSSFGQGISVTQTQMIRAFTAIANDGVMLEPKFISAIYDPNDQTARKSQKEIVGNPV 240 (368)
T ss_dssp CCCCSCSSCCCCBCCCSSHHHHHHGGGTCSCBBCHHHHHHHHHHHHTTTCEECCBCEEEEEEGGGTEEEECCCCEEECCS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEECCCCCCCCCCCC
T ss_conf 42245433233467643320000222346655107888867789854876205579888866876410134432344443
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~m~~~v~~~~~~~~~~~gtg~~~~~~~g~~vaGKTGTaq~~~~~~~~~~~~~~~~~~~fvg~~P~~~P~~ 320 (368)
T d1pyya4 241 SKDAASLTRTNMVLVGTDPVYGTMYNHSTGKPTVTVPGQNVALKSGTAQIADEKNGGYLVGLTDYIFSAVSMSPAENPDF 320 (368)
T ss_dssp CHHHHHHHHHHHHHHHHCTTTCTTEETTTTEESSCCTTSCCEEEEEEEECBCSSSSSBCCSTTCEEEEEEEEESSSSCSE
T ss_pred CHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCE
T ss_conf 27899999999987531145542676046531213799506678822201477788501366565699999957589959
Q ss_pred -----------------------------------------------C
Q ss_conf -----------------------------------------------9
Q 000711 482 -----------------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------------s 482 (1338)
+
T Consensus 321 ai~V~v~~p~~~~g~~gg~vAapi~~~i~~~~~~l~~~~~~~~~~~~~ 368 (368)
T d1pyya4 321 ILYVTVQQPEHYSGIQLGEFANPILERASAMKDSLNLQTTAKALEQVS 368 (368)
T ss_dssp EEEEEEESCSSCCHHHHHHHHHHHHHHHHHTTGGGCTTSCCSTTTTCC
T ss_pred EEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 999999778867887306899999999999997743589999724489
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=27702.14 Aligned_cols=1 Identities=0% Similarity=-1.490 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~la~~~~~I~ls~g~p~~~~p~~i~~al~~~l~~~~~Y~~~~G~~elr~aiA~~~~~~~~~ 80 (368)
T d1v2da_ 1 MRLHPRTEAAKESIFPRMSGLAQRLGAVNLGQGFPSNPPPPFLLEAVRRALGRQDQYAPPAGLPALREALAEEFAVEPES 80 (368)
T ss_dssp CCCCGGGGGC---CHHHHHHHHHHHTCEECCCCSCSSCCCHHHHHHHHHHTTTSCSCCCTTCCHHHHHHHHHHHTSCGGG
T ss_pred CCCCHHHHHCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 97782345467879999999864399889459889998899999999998602568899867899999997525557741
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 Iiit~G~~~al~~~~~~l~~~~d~v~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~ 160 (368)
T d1v2da_ 81 VVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNT 160 (368)
T ss_dssp EEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEES
T ss_pred EEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHHHHCCCCEEEEECC
T ss_conf 26515307888777650444456532358850134567875177320001354345444788999975335765999769
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~~~G~R~g~~~~~~~~ 240 (368)
T d1v2da_ 161 PMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEF 240 (368)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98866666999999999999998498265223333220333333222223344503641455323454322211144223
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~p~g~~~~~~~l~~~~~~ 320 (368)
T d1v2da_ 241 MPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELPGWDAF 320 (368)
T ss_dssp HHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEECCSBSSEEEEECTTCCHH
T ss_pred CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEEEECCCCHHH
T ss_conf 32002221012332233333222222333221025788999999865322456876694786688306999968950899
Q ss_pred -----------------------------------------------C
Q ss_conf -----------------------------------------------9
Q 000711 482 -----------------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------------s 482 (1338)
-
T Consensus 321 ~ll~~~gI~v~pg~~F~~~~~~~~~iRis~~~~~e~i~~ai~rL~~~l 368 (368)
T d1v2da_ 321 RLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVV 368 (368)
T ss_dssp HHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHCCEEEEECHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHC
T ss_conf 999969999996233078999899899996499999999999999869
|
| >d1o7xa_ a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Citrate synthase superfamily: Citrate synthase family: Citrate synthase domain: Citrate synthase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=27630.32 Aligned_cols=1 Identities=0% Similarity=-1.025 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~GL~gv~~~eT~IS~id~~~G~L~YRG~~i~dLa~~~sFEEva~LL~~G~LPt~~el~~f~~~L~~~~~lp~~v~~~ 80 (367)
T d1o7xa_ 1 VVSKGLENVIIKVTNLTFIDGEKGILRYRGYNIEDLVNYGSYEETIYLMLYGKLPTKKELNDLKAKLNEEYEVPQEVLDT 80 (367)
T ss_dssp CBCGGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHHCCHHHHHHHHHHSSCCCHHHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCCCCCCCEEEEEECEEEECCCCEEEECCEEHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 97977799837588680386898879998874999861599999999997798969999999999999863581999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 i~~~p~~~hpm~~l~~~vsal~~~d~~~~~~~~~~~~a~~l~A~~p~i~a~~~r~~~g~~~~~p~~~~s~~~~~~~~~~~ 160 (367)
T d1o7xa_ 81 IYLMPKEADAIGLLEVGTAALASIDKNFKWKENDKEKAISIIAKMATLVANVYRRKEGNKPRIPEPSDSFAKSFLLASFA 160 (367)
T ss_dssp HHHSCTTSCHHHHHHHHHHHHHHHCCCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCSCHHHHHHHHHHS
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 98601230146788888998765300234321110167789989999999999876489877885034468887654048
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~l~~~lvl~adHg~n~Stfa~r~~aSt~~d~~~~~~aa~~~l~Gplhgga~~~~~~~l~~~~~~~~~~~~~ 240 (367)
T d1o7xa_ 161 REPTTDEINAMDKALILYTDHEVPASTTAALVAASTLSDMYSSLTAALAALKGPLHGGAAEEAFKQFIEIGDPNRVQNWF 240 (367)
T ss_dssp SCCCHHHHHHHHHHHHHHSCCSCCHHHHHHHHHHHTTCCHHHHHHHHHHHHTSTTTTTHHHHHHHHHHHHCSGGGHHHHH
T ss_pred CCCCHHHHHHHHHHHEEECCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHH
T ss_conf 88506777776567400015788854300001451376422114667776045434673799999999633654237899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~i~GfGH~vy~~~DPR~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~pNvd~~~~~l~~~ 320 (367)
T d1o7xa_ 241 NDKVVNQKNRLMGFGHRVYKTYDPRAKIFKKLALTLIERNADARRYFEIAQKLEELGIKQFSSKGIYPNTDFYSGIVFYA 320 (367)
T ss_dssp HHHTTTTCCCCTTBCCSSCSSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTTTCCBCTTTTHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 99986147754167875343566228999999999865046512699999999999998534589986838999999998
Q ss_pred ----------------------------------------------C
Q ss_conf ----------------------------------------------9
Q 000711 482 ----------------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------------s 482 (1338)
-
T Consensus 321 lG~p~~~~~~lf~~~R~~G~~AH~~Eq~~~~~~l~RP~~~Y~Gp~~~ 367 (367)
T d1o7xa_ 321 LGFPVYMFTALFALSRTLGWLAHIIEYVEEQHRLIRPRALYVGPEYQ 367 (367)
T ss_dssp HTCCGGGHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCEEEECSCSCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCC
T ss_conf 09786778899999999999999999985789841866510098999
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27630.05 Aligned_cols=1 Identities=0% Similarity=-1.225 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~~~~~~~~l~~~~~~e~ah~~~~~~~~~~~~~~~~~~~~~~L~v~~~Gl~~~nPi~lAsG~~~~~~~i~~~~ 80 (367)
T d1d3ga_ 1 MATGDERFYAEHLMPTLQGLLDPESAHRLAVRFTSLGLLPRARFQDSDMLEVRVLGHKFRNPVGIAAGFDKHGEAVDGLY 80 (367)
T ss_dssp CCSCCHHHHHHTHHHHHHHHSCHHHHHHHHHHHHHTTCCC---CCCCGGGCEEETTEEESSSEEECTTSSTTSSSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCEECCCCCEECCCCCCCHHHHHHHH
T ss_conf 97770899999999999865898999999999998337553236898777568899866998676848787899999986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~G~G~vv~kTit~~~~~gn~~pr~~~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~pv~vsi~~~~~~~ 160 (367)
T d1d3ga_ 81 KMGFGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINRYGFNSHGLSVVEHRLRARQQKQAKLTEDGLPLGVNLGKNKTSV 160 (367)
T ss_dssp HHTCSEEEEEEECSSCBCCSCSCCEEEEGGGTEEEECCCCCBCCHHHHHHHHHTTHHHHHHHHHTTCCEEEEECCCTTCS
T ss_pred HCCCCEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCH
T ss_conf 35874786134246632457760322102111211224767754699998888875411343436863899834654507
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~ad~lelNiScPn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~vKlsP~~~~~~i~~~a 240 (367)
T d1d3ga_ 161 DAAEDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIA 240 (367)
T ss_dssp CHHHHHHHHHHHHGGGCSEEEEESCCTTSTTC----CHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 88888877777765314400245000321122210111101257888887653202245776301247641000134467
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~g~~gi~~~nt~~~~~~~~~~~~~~~~gg~sG~~~~~i~l~~v~~v~~~~~~~ipIig~GGI~s~~Da~e~i~aG 320 (367)
T d1d3ga_ 241 SVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAG 320 (367)
T ss_dssp HHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHT
T ss_pred HHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCC
T ss_conf 88876543102113332234454344211244321121110230889999999738995199988979999999999839
Q ss_pred ----------------------------------------------C
Q ss_conf ----------------------------------------------9
Q 000711 482 ----------------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------------s 482 (1338)
-
T Consensus 321 As~VQi~Ta~~~~Gp~ii~~I~~~L~~~l~~~G~~si~dl~G~a~~~ 367 (367)
T d1d3ga_ 321 ASLVQLYTALTFWGPPVVGKVKRELEALLKEQGFGGVTDAIGADHRR 367 (367)
T ss_dssp CSEEEESHHHHHHCTHHHHHHHHHHHHHHHHTTCSSHHHHTTGGGGC
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCHHCCC
T ss_conf 97887417788239079999999999999984999899962802269
|
| >d1b65a_ d.154.1.1 (A:) L-aminopeptidase D-Ala-esterase/amidase DmpA {Ochrobactrum anthropi [TaxId: 529]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DmpA/ArgJ-like superfamily: DmpA/ArgJ-like family: DmpA-like domain: L-aminopeptidase D-Ala-esterase/amidase DmpA species: Ochrobactrum anthropi [TaxId: 529]
Probab=100.00 E-value=0 Score=27628.91 Aligned_cols=1 Identities=0% Similarity=0.005 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 r~r~R~lGi~~~~~pGp~N~ITDV~GV~VGH~T~~~g~~~~~~~~~~~TGvTvIlp~~g~~~~~~v~ag~~~~~g~~~~~ 80 (367)
T d1b65a_ 1 KPRARDLGLPFTGVTGPYNAITDVDGVGVGFQTIIENEPRPGRKRPARSGVTAILPHMQSETPVPVYAGVHRFNGNGEMT 80 (367)
T ss_dssp CCCGGGGTCCCCSCBCTTSSGGGSTTCEEEEEEEECSSCCTTCSSCCEEEEEEEETTTTCSSCCCEEEEEEEEEESSCBC
T ss_pred CCCHHHCCCCCCCCCCCCCCEECCCCCEECCEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCC
T ss_conf 97567539887888799875014798566223644687654679986711799971899756786055561368876678
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~v~e~g~~~~aIvLTggsa~Glaa~~~v~~~l~~~~~g~~~~~~~~vvPiV~~~~D~~l~d~~~~~~~~~~~~~A~~ 160 (367)
T d1b65a_ 81 GTHWIEDGGYFLGPVVITNTHGIGMAHHATVRWMVDRYASTYQTDDFLWIMPVVAETYDGALNDINGFPVTEADVRKALD 160 (367)
T ss_dssp SHHHHHHHCEECSCEEEEEGGGHHHHHHHHHHHHHHHTHHHHSSSSCCCCCCEEEEECCTTTSCGGGCCCCHHHHHHHHH
T ss_pred CHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCEEEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 05653547753677987567248888789999999856888777885210451279980677876678988999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~A~~~~v~~G~VGAGtGa~~~~~KGGiGtASr~~~~~~~~~tVGaLV~~N~g~~~~~~~~g~p~g~~l~~~~~~~~~~~~ 240 (367)
T d1b65a_ 161 NVASGPVQEGNCGGGTGMITYGFKGGTGTASRVVEFGGRSFTIGALVQANHGQRDWLTIAGVPVGQHMRDGTPQSQLQER 240 (367)
T ss_dssp TCBSSCCCCBSCGGGTTCEETTEECEEEEEEEEEEETTEEEEEEEEEEECCCCGGGCCBTTBCHHHHCCTTCHHHHC---
T ss_pred HHHCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCC
T ss_conf 75228877887573211321356787521267887178835999999744788500240775200131445777777889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 nTtI~VVATDApL~~~ql~RlA~~A~~GlARai~p~ht~dGD~vfA~STg~~~~~~~~~~~~~~~~~l~~~~l~~lf~Aa 320 (367)
T d1b65a_ 241 GSIIVVLATDLPLMPHQLKRLARRASIGIGRNGTPGGNNSGDIFIAFSTANQRPMQHRSAPFLDVEMVNDEPLDTVYLAA 320 (367)
T ss_dssp -CEEEEEEECSCCCHHHHHHHHHTHHHHHHTTTCCCCTTCEEEEEEEECCSCCCCGGGSCSEEEEEEECSGGGHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHCHHHHHH
T ss_conf 98899999598189999999999865315312677779984779994057867766556554441004720008899999
Q ss_pred ----------------------------------------------C
Q ss_conf ----------------------------------------------9
Q 000711 482 ----------------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------------s 482 (1338)
+
T Consensus 321 aea~eeAI~nal~~A~t~~G~~~~~~~~~alp~d~~~~~~~~~~~l~ 367 (367)
T d1b65a_ 321 VDSVEEAVVNAMIAAEDMGGTPFDRLLVQAIDHERLRAVLRQYGRLA 367 (367)
T ss_dssp HHHHHHHHHHHHHHCCCEECSTTCSCEECCCCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHHHHHHHCCCC
T ss_conf 99999999999974677657589987741799999999999846679
|
| >d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase {Cushaw squash (Cucurbita moschata) [TaxId: 3662]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Glycerol-3-phosphate (1)-acyltransferase superfamily: Glycerol-3-phosphate (1)-acyltransferase family: Glycerol-3-phosphate (1)-acyltransferase domain: Glycerol-3-phosphate (1)-acyltransferase species: Cushaw squash (Cucurbita moschata) [TaxId: 3662]
Probab=100.00 E-value=0 Score=27627.28 Aligned_cols=1 Identities=0% Similarity=-0.927 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~i~~~~e~~~lp~~~~~~~~~~~~~y~~a~~~s~~~~a~e~~~~~~~~~~~~~~~~~~~p~~ 80 (367)
T d1iuqa_ 1 ASHSRKFLDVRSEEELLSCIKKETEAGKLPPNVAAGMEELYQNYRNAVIESGNPKADEIVLSNMTVALDRILLDVEDPFV 80 (367)
T ss_dssp CCCCCGGGGCCSHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 98641322266589999999999855789857999999999999999973489995089999999999888741478743
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 f~~~h~~~~~~~~~~~~~~~~~~~li~~~~s~v~~~~~l~~~~Ekl~~g~nVIlvSNHqS~~D~~il~~ll~~~~~~l~r 160 (367)
T d1iuqa_ 81 FSSHHKAIREPFDYYIFGQNYIRPLIDFGNSFVGNLSLFKDIEEKLQQGHNVVLISNHQTEADPAIISLLLEKTNPYIAE 160 (367)
T ss_dssp CCSEECCCCSSSCHHHHHHHHHGGGBCGGGCEEECHHHHHHHHHHHHTTCEEEEEECCCCTTHHHHHHHHHTTTCHHHHH
T ss_pred CCCCCHHCCCCCCHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 67521000578778999999999986478777815789999999860799779987885400389999998512656210
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~i~f~Ak~~l~~~Pl~~~f~~~~g~I~V~rk~~i~~~p~l~~~~~~~~~~al~~~~~lL~~Gg~~v~IfPEGTRsr~~~~ 240 (367)
T d1iuqa_ 161 NTIFVAGDRVLADPLCKPFSIGRNLICVYSKKHMFDIPELTETKRKANTRSLKEMALLLRGGSQLIWIAPSGGRDRPDPS 240 (367)
T ss_dssp HCEEEECTHHHHCTTTHHHHHTSEEEECCCGGGTTSSGGGHHHHHHHHHHHHHHHHHHHHHCCCEEEECTTCSCCCBCTT
T ss_pred CEEEEEEHHHHCCHHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC
T ss_conf 33898545562257789999748878995465444563101002233268899999986168759999456764676666
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 dg~l~p~~F~~~~~~~~~~LA~~sgvP~hV~Pvai~~~d~~pP~~~v~~~ige~R~~~~~~V~i~~G~pId~~~~~~~~~ 320 (367)
T d1iuqa_ 241 TGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALLCHDIMPPPSQVEIEIGEKRVIAFNGAGLSVAPEISFEEIAATHK 320 (367)
T ss_dssp TCCBCCCCCCHHHHHHHHHHHHTSSSCEEEEEEEEECGGGSCCC----------CCCCCBCCEEEECCCCCHHHHHHTSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCCEEECHHHHCCCCCCCCCCCCCCHHHCCCCCCCCEEEEECCCCCHHHHHHHCC
T ss_conf 66505665575505899999855799956856044133425887543320001036677861488679735666300022
Q ss_pred ----------------------------------------------C
Q ss_conf ----------------------------------------------9
Q 000711 482 ----------------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------------s 482 (1338)
=
T Consensus 321 ~~~e~~ea~~k~l~d~v~eq~~~Lk~ai~gk~~~~~~~p~~~~~qp~ 367 (367)
T d1iuqa_ 321 NPEEVREAYSKALFDSVAMQYNVLKTAISGKQGLGASTADVSLSQPW 367 (367)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCGGGGCCSSCCEECCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 63889999999999999999999999985689822258888878999
|
| >d1ue8a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cyp119 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=100.00 E-value=0 Score=27626.99 Aligned_cols=1 Identities=0% Similarity=-0.660 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~Y~~~~~lR~~~Pv~~~~~~w~vt~~~di~~vl~d~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~dg~~H~~~R 80 (367)
T d1ue8a_ 1 MYDWFKQMRKESPVYYDGKVWNLFKYEDCKMVLNDHKRFSSNLTGYNDKLEMLRSGKVFFDIPTRYTMLTSDPPLHDELR 80 (367)
T ss_dssp CHHHHHHHHHHCSEEECSSCEEECCHHHHHHHHTCTTTEECCCSSTTTTHHHHHTTCCCCCCGGGSSGGGCCTTHHHHHH
T ss_pred CCHHHHHHHHCCCEEEECCEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 90899999856998844998998799999999669853537765567542224466432224555552006867875667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~f~~~~l~~~~i~~~~~~ll~~l~~~~d~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (367)
T d1ue8a_ 81 NLTADAFNPSNLPVDFVREVTVKLLSELDEEFDVIESFAIPLPILVISKMLGINPDVKKVKDWSDLVALRLGRADEIFSI 160 (367)
T ss_dssp HHHHGGGSGGGSCHHHHHHHHHHHHTTCCSEEEHHHHTTTHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTSSSSSTTTCC
T ss_pred HCCCCCCCHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 30133478665144999999999986303345316665543444210110464211026778888877620004799999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~ag~ett~~~l~~~~~~l~~~~~~~~~~~~~~ 240 (367)
T d1ue8a_ 161 GRKYLELISFSKKELDSRKGKEIVDLTGKIANSNLSELEKEGYFILLMIAGNETTTNLIGNAIEDFTLYNSWDYVREKGA 240 (367)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHCCCCCHHHHHHH
T ss_conf 99999999999999986423431012344441347777764133210010111222101023777633000111345556
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~ai~E~lR~~p~~~~~~r~~~~~~~l~g~~ip~G~~V~~~~~~~~rdp~~~~dP~~F~P~R~~~~~l~FG~G~r~C~G~ 320 (367)
T d1ue8a_ 241 LKAVEEALRFSPPVMRTIRVTKEKVKIRDQVIDEGELVRVWIASANRDEEVFKDPDSFIPDRTPNPHLSFGSGIHLCLGA 320 (367)
T ss_dssp HHHHHHHHHHSCSBCCEEEEESSCEEETTEEECSSCEEEECHHHHTTCTTTSSSTTSCCTTCCSCCCCTTCCSTTSCTTH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 77877645205532334432344310221134048754433210035766689722018798999988779987188119
Q ss_pred ----------------------------------------------C
Q ss_conf ----------------------------------------------9
Q 000711 482 ----------------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------------s 482 (1338)
.
T Consensus 321 ~lA~~e~~~~l~~Ll~rf~~~~~~~~~~~~~~~~~g~~~l~Vr~~r~ 367 (367)
T d1ue8a_ 321 PLARLEARIALEEFAKKFRVKEIVKKEKIDNEVLNGYRKLVVRVERT 367 (367)
T ss_dssp HHHHHHHHHHHHHHHHHEEEEEEEEEEECSCSSBCCEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
T ss_conf 99999999999999985896634898534587758975236999979
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=100.00 E-value=0 Score=27627.63 Aligned_cols=1 Identities=100% Similarity=2.696 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
|
T Consensus 1 ~~v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (367)
T d1n4wa1 1 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEAPLGSFLWLDVVNRN 80 (367)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCCCCCTTSSSSCCTTSCCGGGSBSCSBCCCCTTCHHHHGGGCCB
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 95709996769899999999977959199991689988766565422222344544333334433543321235677766
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~g~~~~~~~~~~~~~~g~~lGG~S~i~~~~~~r~~~~~f~~~~~~~~~~~~l~pyy~~ae~~l~~~~~~~~~~~~~ 160 (367)
T d1n4wa1 81 IDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEILPRVDSSEMYDRYFPRANSMLRVNHIDTKWFEDT 160 (367)
T ss_dssp CCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCTTSCHHHHHHTHHHHHHHHHTCBCCCHHHHHHC
T ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCCEECCEEECCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 66566740223688652135776378873224360006866742232245738899999999998829877888866667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~k~s~~~~yl~~a~~~gn~~i~~~t 240 (367)
T d1n4wa1 161 EWYKFARVSREQAGKAGLGTVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHGKQSLDKTYLAAALGTGKVTIQTLH 240 (367)
T ss_dssp GGGHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSCCSGGGTCSTTCCSSSBCCTTTTHHHHHHHTTSEEEEESE
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCC
T ss_conf 78728899999998738642235323224875555655567631246433445654467667623789758980998787
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~V~~I~~~~~g~~~v~v~~~~~~~~~~~~~~i~Ak~VVLaAGai~Tp~LLl~S~~~g~l~~~s~~lG~~~~~~l~~~~~~ 320 (367)
T d1n4wa1 241 QVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELLVRARDTGTLPNLNSEVGAGWGCVLGKATDD 320 (367)
T ss_dssp EEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEECSHHHHHHHHHHHHHHTTSSTTCCTTTTCCBSSCTTTTBCT
T ss_pred EEEEEEECCCCCEEEEEEEECCCCCCEEEEEEECCEEEEECCHHCCHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCC
T ss_conf 89998985899889999997777752049998648999906523079999847777999986676667865545644456
Q ss_pred ----------------------------------------------C
Q ss_conf ----------------------------------------------9
Q 000711 482 ----------------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------------s 482 (1338)
+
T Consensus 321 ~g~~~~~~~~~~~~g~~i~~~~~~~p~~t~~ala~~~~~~~~~~~~~ 367 (367)
T d1n4wa1 321 YGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQDVT 367 (367)
T ss_dssp TSBBTTCSSEEECSGGGSCSCCSSCSHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 66435877730347743568687893340799998799999885459
|
| >d1ursa_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: D-maltodextrin-binding protein, MBP species: Alicyclobacillus acidocaldarius [TaxId: 405212]
Probab=100.00 E-value=0 Score=27623.80 Aligned_cols=1 Identities=0% Similarity=-0.194 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 qTIt~w~~~~~~~~~~~~~~~~~F~~~~p~~~v~~~~~~~~~~~~~l~~~~~ag~~pDi~~~~~~~~~~~~~~~g~l~~L 80 (367)
T d1ursa_ 1 QTITVWSWQTGPELQDVKQIAAQWAKAHGDKVIVVDQSSNPKGFQFYATAARTGKGPDVVFGMPHDNNGVFAEEGLMAPV 80 (367)
T ss_dssp CEEEEEESCCHHHHHHHHHHHHHHHHHHCCEEEEEECTTCTTCTTHHHHHHHTTCCCSEEEEEEGGGHHHHHHTTCBCCC
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCC
T ss_conf 97999827884579999999999999879989999848828999999999966999839998582789999987995400
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~dG~~y~iP~~~~~~~l~yNk~~~~~~p~T~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (367)
T d1ursa_ 81 PSGVLNTGLYAPNTIDAIKVNGTMYSVPVSVQVAAIYYNKKLVPQPPQTWAEFVKDANAHGFMYDQANLYFDYAIIGGYG 160 (367)
T ss_dssp CTTSCCGGGSCHHHHHTTEETTEECSEEEEEEECEEEEETTTCSSCCCSHHHHHHHHHHHCEECCTTCHHHHHHHHHHTT
T ss_pred HHHHHHHCCCCHHHHHHCEECCEEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 24554411479778854638877876420354158887401023431008999999866303667777521068887541
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~f~~G~~a~~~~g~~~~~~~~~~~~~~~~ 240 (367)
T d1ursa_ 161 GYVFKDNNGTLDPNNIGLDTPGAVQAYTLMRDMVSKYHWMTPSTNGSIAKAEFLAGKIGMYVSGPWDTADIEKAKIDFGV 240 (367)
T ss_dssp CEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHTSCSCCTTCCHHHHHHHHHTTCCSEEEECGGGHHHHHHTTCCEEE
T ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 02211588644543135588889999999999986136564222037788888527741103366665444441156326
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~P~~~~g~~~~~~~~~~~~~i~~~s~~~e~A~~fl~~l~s~e~q~~~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~~~ 320 (367)
T d1ursa_ 241 TPWPTLPNGKHATPFLGVITAFVNKESKTQAADWSLVQALTSAQAQQMYFRDSQQIPALLSVQRSSAVQSSPTFKAFVEQ 320 (367)
T ss_dssp ECCCCCTTSCCCCCEEEEEEEEEBTTCSCHHHHHHHHHHHTSHHHHHHHHHHHCCEESSHHHHTSHHHHTCHHHHHHHHH
T ss_pred EECCCCCCCCCCCEECCCCCCEECCCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHCHHHHHCHHHHHHHHH
T ss_conf 63365788664310005654010210131688999999850699999999971988873767739553209389999999
Q ss_pred ----------------------------------------------C
Q ss_conf ----------------------------------------------9
Q 000711 482 ----------------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~~t~~~al~~~~~~i~kg 367 (367)
T d1ursa_ 321 LRYAVPMPNIPQMQAVWQAMSILQNIIAGKVSPEQGAKDFVQNIQKG 367 (367)
T ss_dssp GGGCEECCCSTHHHHHHHHTTHHHHHHHTSSCHHHHHHHHHHHHHC-
T ss_pred HHHCEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
T ss_conf 95083178785489999999999999829899999999999998576
|
| >d1qw9a2 c.1.8.3 (A:18-384) Alpha-L-arabinofuranosidase, catalytic domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Alpha-L-arabinofuranosidase, catalytic domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=0 Score=27626.81 Aligned_cols=1 Identities=0% Similarity=-0.327 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~i~~~i~g~f~E~lg~~i~~g~~~~~~~~~~~~G~R~dv~~~l~~l~~~~lR~PGG~~~~~y~W~~~iGp~~~Rp~~~~~ 80 (367)
T d1qw9a2 1 EIDKRIYGSFIEHLGRAVYGGIYEPGHPQADENGFRQDVIELVKELQVPIIRYPGGNFVSGYNWEDGVGPKEQRPRRLDL 80 (367)
T ss_dssp ECCGGGGEEECCSSTTSTBTTTBCTTCTTBCTTSBBHHHHHHHHHHTCCEEEESCSGGGGGCCGGGGSSCGGGCCCEEET
T ss_pred CCCHHHCCCHHHHCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHCCCCCCC
T ss_conf 98824424406543573207664799998887665999999999639987865886136705212365986778886588
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~w~~~~~~~~G~~Ef~~~~~~~gaep~~~vn~g~~~~~~a~d~vey~n~~~~t~~~~~R~~~G~~~P~~v~yweIGNE~~ 160 (367)
T d1qw9a2 81 AWKSVETNEIGLNEFMDWAKMVGAEVNMAVNLGTRGIDAARNLVEYCNHPSGSYYSDLRIAHGYKEPHKIKTWCLGNAMD 160 (367)
T ss_dssp TTTEEECCSSCHHHHHHHHHHHTCEEEEEECCSSCCHHHHHHHHHHHHCCSSSHHHHHHHHTTCCSCCCCCEEEESSCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCC
T ss_conf 88876767777899999999809838999837974099999999997068988889999871887888732899635111
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 g~~~~g~~~~~~Y~~~~~~f~~amk~~dP~i~lia~g~~~~~~~~~~~w~~~vl~~~~~~iD~is~H~Y~~~~~~~~~~~ 240 (367)
T d1qw9a2 161 GPWQIGHKTAVEYGRIACEAAKVMKWVDPTIELVVCGSSNRNMPTFAEWEATVLDHTYDHVDYISLHQYYGNRDNDTANY 240 (367)
T ss_dssp STTSTTCCCHHHHHHHHHHHHHHHHHHCTTCEEEECCCSCTTSTTTTHHHHHHHHHHGGGCSEEEEEEEECCTTCCHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 56555788999999999999998760299836999868877776555289999861311577022347778875512455
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~iavdEwn~wy~~~~~~~~~~~~~~~~~~l~~~~tl~~AL~~A~~L~~~ 320 (367)
T d1qw9a2 241 LALSLEMDDFIRSVVAIADYVKAKKRSKKTIHLSFDEWNVWYHSNEADKLIEPWTVAPPLLEDIYNFEDALLVGCMLITL 320 (367)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHTCSCCCEEEEEEEEECCTTHHHHTTCCTTBSSCCTTCCCCBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 55677799999999999999874046778851886224564454555555554233755312237699999999999999
Q ss_pred ----------------------------------------------C
Q ss_conf ----------------------------------------------9
Q 000711 482 ----------------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------------s 482 (1338)
-
T Consensus 321 ~R~sD~V~mA~~A~lvNvl~~i~~~~~~~~~~~~~y~v~~~~s~~~r 367 (367)
T d1qw9a2 321 MKHADRVKIACLAQLVNVIAPIMTEKNGPAWKQTIYYPFMHASVYGR 367 (367)
T ss_dssp HHTTTTEEEEEEECSBSSSCSEEECTTSCEEECTTHHHHHHHHHHCC
T ss_pred HHCCCEEEEEEHHHHHHHHCCEEECCCCCEEECCCHHHHHHHHHHCC
T ss_conf 97259556540337664102148659998610751199999998529
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=27557.49 Aligned_cols=1 Identities=0% Similarity=0.038 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 80 (366)
T d1hz4a_ 1 EIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQM 80 (366)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 94430566213999999999999888999999999999854868996799999999999999879999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~ 160 (366)
T d1hz4a_ 81 ARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI 160 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 87501148999999888788788888999998899999986750341256788899888789998145666689999988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 240 (366)
T d1hz4a_ 161 EVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 240 (366)
T ss_dssp HHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 87663002468999988888887646678888999999999987311572699999999999986044898999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 241 KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp CCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 76224666777889999999987587999999999999887642667479999999999999878999999999999997
Q ss_pred ---------------------------------------------C
Q ss_conf ---------------------------------------------9
Q 000711 482 ---------------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------------s 482 (1338)
+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~~a~~ll~~in 366 (366)
T d1hz4a_ 321 ANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREIN 366 (366)
T ss_dssp HHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 6531829999999999999999998659986999999999987559
|
| >d1moqa_ c.80.1.1 (A:) "Isomerase domain" of glucosamine 6-phosphate synthase (GLMS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: SIS domain superfamily: SIS domain family: double-SIS domain domain: "Isomerase domain" of glucosamine 6-phosphate synthase (GLMS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=27552.44 Aligned_cols=1 Identities=100% Similarity=2.265 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
|
T Consensus 1 ~~~~~~~~~m~kEI~eQP~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~vG~GsS~~aa~~~~~~~~~~~~~~v 80 (366)
T d1moqa_ 1 GDKGIYRHYMQKEIYEQPNAIKNTLTGRISHGQVDLSELGPNADELLSKVEHIQILACGTSYNSGMVSRYWFESLAGIPC 80 (366)
T ss_dssp CCCTTCSSHHHHHHHTHHHHHHHHHTTSEETTEECCGGGCSSHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHSCCCE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 99999861788999889999999999876368620543103068887308889999822899999999999998439204
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~sef~~~~~~~~~~~lvI~iSqSG~s~~ti~a~~~a~~~g~~~ti~iT~~~~S~la~~ad~~i~~~~g~E~~~~~T 160 (366)
T d1moqa_ 81 DVEIASEFRYRKSAVRRNSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVAST 160 (366)
T ss_dssp EEEEHHHHHTSCCCCCTTEEEEEEESSSCCHHHHHHHHHHTTTTCSEEEEEESSTTCHHHHHSSEEEECCCCCCCSSSCS
T ss_pred EEEECCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHCCCCEEECCCCCCCCHHH
T ss_conf 99965445244345699987998620589635899999999749973899989999978986074632356654220000
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 k~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~G~~~g~A~E~ 240 (366)
T d1moqa_ 161 KAFTTQLTVLLMLVAKLSRLKGLDASIEHDIVHGLQALPSRIEQMLSQDKRIEALAEDFSDKHHALFLGRGDQYPIALEG 240 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHTTCSEEEEEECGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH
T ss_conf 57899999999999986442032026778779999998876889987777899899997367526996577758999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 aLKl~E~~~~~a~~~~~~Ef~HGP~~~i~~~~~vi~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i 320 (366)
T d1moqa_ 241 ALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKSNIEEVRARGGQLYVFADQDAGFVSSDNMHII 320 (366)
T ss_dssp HHHHHHHHCCEEEEEEGGGGGGTGGGGCSTTSCEEEESCCHHHHHHHHHHHHHTGGGTCCEEEEEEGGGCCCCBTTEEEE
T ss_pred HHHHHHHHHHEEEEECHHHHHCCCHHEECCCCEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEE
T ss_conf 99999887674785037776277430230796089846898177999999999997498299996687322445775699
Q ss_pred ---------------------------------------------C
Q ss_conf ---------------------------------------------9
Q 000711 482 ---------------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------------s 482 (1338)
-
T Consensus 321 ~~p~~~~~l~pl~~~ip~Qlla~~~A~~~G~~PD~Pr~L~K~vtve 366 (366)
T d1moqa_ 321 EMPHVEEVIAPIFYTVPLQLLAYHVALIKGTDVDQPRNLAKSVTVE 366 (366)
T ss_dssp EECCCCGGGHHHHHHHHHHHHHHHHHHHHTCCSSSCTTCCSCCCCC
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEC
T ss_conf 6699756787999999999999999998198999999998785319
|
| >d1io7a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cyp119 species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=27552.07 Aligned_cols=1 Identities=100% Similarity=-0.427 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~y~~~~~lR~~~Pv~~~~~~w~vt~~~~v~~vl~d~~~f~s~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~dg~~H~~~R 80 (366)
T d1io7a_ 1 MYDWFSEMRKKDPVYYDGNIWQVFSYRYTKEVLNNFSKFSSDLTGYHERLEDLRNGKIRFDIPTRYTMLTSDPPLHDELR 80 (366)
T ss_dssp CHHHHHHHHHHCSEEECSSCEEECSHHHHHHHHHCTTTEECCCSSHHHHHHHHTTTCCCCSCGGGSSGGGCCTTHHHHHH
T ss_pred CCHHHHHHHHCCCEEEECCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHH
T ss_conf 90899999835998873998999689999999659400336764555554433355432235555550117857888987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~f~~~~l~~~~~~i~~~a~~ll~~~~~~~~D~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (366)
T d1io7a_ 81 SMSADIFSPQKLQTLETFIRETTRSLLDSIDPREDDIVKKLAVPLPIIVISKILGLPIEDKEKFKEWSDLVAFRLGKPGE 160 (366)
T ss_dssp GGGTTTTCHHHHHHHHHHHHHHHHHHHHTCCTTSEEHHHHTTTHHHHHHHHHHHTCCGGGHHHHHHHGGGCTTSCCCTTC
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 76145565130677888899999999873135563210000000122011001687345799999999999764030146
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~l~aG~~tt~~~l~~~l~~l~~~~~~~~~~~~~l~ 240 (366)
T d1io7a_ 161 IFELGKKYLELIGYVKDHLNSGTEVVSRVVNSNLSDIEKLGYIILLLIAGNETTTNLISNSVIDFTRFNLWQRIREENLY 240 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSCHHHHHHHTSSCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTCHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHH
T ss_conf 78888889887665420222045665542014589999999999999714420377999999874313322233442001
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~ee~~r~~~~~~~~~R~~~~d~~i~g~~ip~G~~V~~~~~~~~rdp~~~~dP~~F~PeR~~~~~l~FG~G~r~C~G~ 320 (366)
T d1io7a_ 241 LKAIEEALRYSPPVMRTVRKTKERVKLGDQTIEEGEYVRVWIASANRDEEVFHDGEKFIPDRNPNPHLSFGSGIHLCLGA 320 (366)
T ss_dssp HHHHHHHHHHSCSBCCEEEEESSCEEETTEEECTTCEEEECHHHHTTCTTTSTTTTSCCTTCCSCCCCTTCCGGGSCTTH
T ss_pred HHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 00046553000234300010210024333436789777332010025611258665418898999988788986488369
Q ss_pred ---------------------------------------------C
Q ss_conf ---------------------------------------------9
Q 000711 482 ---------------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------------s 482 (1338)
|
T Consensus 321 ~lA~~e~~~~l~~ll~rf~~~~~~~~~~~~~~~~~~~~~lpVrl~~ 366 (366)
T d1io7a_ 321 PLARLEARIAIEEFSKRFRHIEILDTEKVPNEVLNGYKRLVVRLKS 366 (366)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEEEEEECCCSSBCCEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEEEEEEC
T ss_conf 9999999999999999779882089865787764787554799969
|
| >d1h6za1 c.1.12.2 (A:538-903) Pyruvate phosphate dikinase, C-terminal domain {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate phosphate dikinase, C-terminal domain domain: Pyruvate phosphate dikinase, C-terminal domain species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=0 Score=27549.30 Aligned_cols=1 Identities=0% Similarity=-0.293 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~~~w~d~~r~i~v~aNi~~~~d~~~a~~~GAdGIGL~RtEflfl~~~~~p~~~e~i~~~~~~~~~~~l~ 80 (366)
T d1h6za1 1 RSPDLKGSFQTILQWCQEMKRLGVRTNADTPADAAKARSFGAEGVGLCRTEHMFFEGSRINFIREMILADSASGRKAALD 80 (366)
T ss_dssp CCSCSTTHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHTTTCCSEEECBCSGGGSTTTHHHHHHHHHSCSSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHCCCCEECHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHH
T ss_conf 98987458999999875378669997089999999999759984503887998618987882898763235577999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 k~~~~~~~~y~~i~~a~~~~pV~iRtlD~g~dk~~p~~~~~~~e~~~~~~~~~~~~~~~~~~~~E~NP~LG~RGiR~~L~ 160 (366)
T d1h6za1 81 KLLPIQRADFVGILRAMRGLPVTIRLLDPPLHEFVPHDAAAQFELAQKLGMPAEKVRNRVNALHELNPMLGHRGCRLGIT 160 (366)
T ss_dssp HHHHHHHHHHHHHHTTTSSSCEEEECCCSCGGGGCCSSCSSTTTTSCSSSCCHHHHHHHHHSSCCSSSTTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHCC
T ss_conf 87788999999999970899879996224322357850555543111003543555532025557884123456655414
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~p~lf~~QlrAilrA~~~~~~~g~~~~l~iMiP~v~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~iG~MiEvPsaal~~ 240 (366)
T d1h6za1 161 YPEIYNMQVRAIIEAAIAVSEEGSSVIPEIMVPLVGKKEELSLIREEVVKTAEAVITKSGKRVHYTVGTMIEVPRAAVTA 240 (366)
T ss_dssp STTHHHHHHHHHHHHHHHHHTTTCCCCEEEEECCCCSHHHHHHHHHHHHHHHHHHHHHSCSCCCCEEEEEECSHHHHHTH
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHH
T ss_conf 80667999999999999987528865401221206679999989999989999887504876441367641213899869
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 d~~a~~vDF~SIGTNDLtQy~la~dR~n~~v~~~~~~~~~~~~~~p~~~~~~~av~~lI~~a~~~~r~~~~~i~vsiCGE 320 (366)
T d1h6za1 241 DSIAQKADFFSFGTNDLTQMGCGFSRDDAGPFLRHYGNLGIYAQDPFQSIDQEGIGELVRIAVTKGRRVKPMLKMGICGE 320 (366)
T ss_dssp HHHTTTCSEEEECTTHHHHHHHTCCGGGCHHHHTTTTTTCSSSSCTTTSCCTTTHHHHHHHHHHHHHHHSTTCEEEECSG
T ss_pred HHHHHHCCEEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 99863050899601046567765301551134567765200010556606699999999999998775189981997064
Q ss_pred ---------------------------------------------C
Q ss_conf ---------------------------------------------9
Q 000711 482 ---------------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------------s 482 (1338)
-
T Consensus 321 ~a~dp~~~~~Li~lGi~~lSvsp~~ip~vk~a~a~~~~~~~r~~~~ 366 (366)
T d1h6za1 321 HGGDPATIGFCHKVGLDYVSCSPFRVPVAIVAAAHASIKDRRAAMK 366 (366)
T ss_dssp GGGCHHHHHHHHHHTCSEEEECGGGHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 0239999999998699979989277699999999854998787459
|
| >d2bvya2 c.1.8.3 (A:5-370) Mannanase A, ManA {Cellulomonas fimi [TaxId: 1708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Mannanase A, ManA species: Cellulomonas fimi [TaxId: 1708]
Probab=100.00 E-value=0 Score=27548.67 Aligned_cols=1 Identities=0% Similarity=-0.227 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 t~~lvd~~At~~t~~L~~~L~~~~g~~il~Gqq~~~~~g~~~~~~~~~~~~v~~~tG~yPAv~G~D~~~~~~~~~~~~~~ 80 (366)
T d2bvya2 1 TIAIVDADATAETRSLLSYLDGVRGEGILFGHQHTTSFGLTTGPTDGTTSDVKNVTGDFPAVFGWDTLIIEGNERPGLAE 80 (366)
T ss_dssp CBCCSSTTCCHHHHHHHHHHHHHTTTCEEEEEETTTTSCSSSCSCCSSCCHHHHHHSSCBSEEEEETTTTTTSSTTCCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCC
T ss_conf 96665888799999999999985489879986146444666687426799999976888776443114567874433223
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~Ggivt~~wH~~nP~~g~~~~~~~~~~~~~vlpg~~~~~~~~~~l~~ia~~a~~Lk~~~~~ 160 (366)
T d2bvya2 81 NTRDENIALFADYIRKADAIGGVNTVSAHVENFVTGGSFYDTSGDTLRAVLPGGSHHAELVAYLDDIAELADASRRDDGT 160 (366)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCEEEEECCCCCTTTSCCTTCCTTCHHHHHSTTSTTHHHHHHHHHHHHHHHHHCBCTTSC
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 67311489999999976306997899971377888986557741689873689970689999999999999998750478
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~VPVl~Rp~HE~nG~WfwWg~~~~~p~~y~~lwr~~~d~l~~~~g~~Nliwvwsp~~~~~~~~~~~~~~YPGDdyVDivG 240 (366)
T d2bvya2 161 LIPIVFRPWHENAGSWFWWGAAYGSPGEYQELYRFTVEYLRDVKGVSNFLYAWGPGGGFGGNRDVYLRTYPGDAFVDVLG 240 (366)
T ss_dssp BCCEEEECSTTTTSSSSTTSTTSSCHHHHHHHHHHHHHHHHHTSCCCSEEEEECCCSCCTTCHHHHGGGCCCTTTCSEEC
T ss_pred CCCEEEEECHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHCCCCCEEEEEE
T ss_conf 86089831220379855057889998999999999999999725876169986168778865211665288987478988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~D~Y~~~~~~~~~~~~~~~l~~~~~~a~~~~Kp~altE~G~~~~~~~~~~~~~~W~~~~l~~i~~~~~~~~~~y~~~W~n 320 (366)
T d2bvya2 241 LDTYDSTGSDAFLAGLVADLRMIAEIADEKGKVSAFTEFGVSGGVGTNGSSPAQWFTKVLAAIKADPVASRNAYMETWAN 320 (366)
T ss_dssp CEEEESSCCHHHHHHHHHHHHHHHHHHHHHTCEECBCEEEETTCSSTTSCCCTTHHHHHHHHHHHSTTTTCCSEEEECCC
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECC
T ss_conf 74457888752278999999999999873699579942002578644678742589999999873721001048988548
Q ss_pred ---------------------------------------------C
Q ss_conf ---------------------------------------------9
Q 000711 482 ---------------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~~~p~~g~~s~~dF~~~~~dp~~~f~~~l~~~y~~~~~~~~ 366 (366)
T d2bvya2 321 FDAGQHFVPVPGDALLEDFQAYAADPFTLFASEVTGAFDRTVAAAP 366 (366)
T ss_dssp CSSSSCSSCCTTCTTHHHHHHHHHSTTEEBGGGCCSTTCCCCCBCC
T ss_pred CCCCCCCEECCCCCCHHHHHHHHCCCHHHHHHHCCHHHCCCCCCCC
T ss_conf 9988761236997469999999759566542227032147666797
|
| >d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Glycerol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=0 Score=27547.54 Aligned_cols=1 Identities=0% Similarity=0.205 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
.
T Consensus 1 ~~~~~f~~P~~~~~G~gal~~l~~~l~~~g~r~lvvtd~~~~~~~~~~l~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~ 80 (366)
T d1jq5a_ 1 AAERVFISPAKYVQGKNVITKIANYLEGIGNKTVVIADEIVWKIAGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANI 80 (366)
T ss_dssp CCCBCCCCCSEEEEETTGGGGHHHHHTTTCSEEEEEECHHHHHHTHHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHH
T ss_pred CCCCEEECCCEEEEECCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 99858958963999039999999999974994899989857899999999999877996999981899999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~D~IiavGGGs~iD~aK~iA~~~~~p~i~IPTT~gtgse~t~~avi~~~~~~~~~~~~~~~~P~~vi~Dp~l~~t 160 (366)
T d1jq5a_ 81 ARKAEAAIVIGVGGGKTLDTAKAVADELDAYIVIVPTAASTDAPTSALSVIYSDDGVFESYRFYKKNPDLVLVDTKIIAN 160 (366)
T ss_dssp HHHTTCSEEEEEESHHHHHHHHHHHHHHTCEEEEEESSCCSSCTTCSEEEEECTTSCEEEEEECSSCCSEEEEEHHHHHT
T ss_pred HHCCCCCEEEEECCCCCCCCHHEEEECCCCEEEEHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCHHH
T ss_conf 62038868998168864422000120466535402434434320013212323567422110114557789998610432
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 lP~~~~~sg~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (366)
T d1jq5a_ 161 APPRLLASGIADALATWVEARSVIKSGGKTMAGGIPTIAAEAIAEKCEQTLFKYGKLAYESVKAKVVTPALEAVVEANTL 240 (366)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTSSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 32788898677788899999998860654323034479999999999999987468876667635658999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~g~~~~~~~~~~~H~i~h~l~~~~g~~~~~~HG~~va~g~~~~~~l~~~~~~~~~~~~~l~~~lglP~~L~dlgi~~~~ 320 (366)
T d1jq5a_ 241 LSGLGFESGGLAAAHAIHNGFTALEGEIHHLTHGEKVAFGTLVQLALEEHSQQEIERYIELYLCLDLPVTLEDIKLKDAS 320 (366)
T ss_dssp HHHHHHHHHCCCHHHHHHHHGGGSCSGGGGSCHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCCCSTTTTTCTTCC
T ss_pred HHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCC
T ss_conf 60433467876645211012676237764767633779999999998428899999999999986999999994989777
Q ss_pred ---------------------------------------------C
Q ss_conf ---------------------------------------------9
Q 000711 482 ---------------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~l~~ia~~a~~~~~~~~nP~~~t~edi~~il~~a~~~~~~~~~~ 366 (366)
T d1jq5a_ 321 REDILKVAKAATAEGETIHNAFNVTADDVADAIFAADQYAKAYKEK 366 (366)
T ss_dssp HHHHHHHHHHHTSTTCGGGGTCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999840874147999999999999999999999987209
|
| >d1u5ua_ e.5.1.2 (A:) Allene oxide synthase-lipoxygenase protein, N-terminal domain {Black sea rod (Plexaura homomalla) [TaxId: 47982]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Heme-dependent catalase-like superfamily: Heme-dependent catalase-like family: Allene oxide synthase domain: Allene oxide synthase-lipoxygenase protein, N-terminal domain species: Black sea rod (Plexaura homomalla) [TaxId: 47982]
Probab=100.00 E-value=0 Score=27547.49 Aligned_cols=1 Identities=0% Similarity=-1.657 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~HakG~ga~G~f~v~~d 80 (366)
T d1u5ua_ 1 WKNFGFEIFGEKYGQEELEKRIKDEHTPPPDSPVFGGLKLKLKKEKFKTLFTLGTTLKGFRRATHTVGTGGIGEITIVND 80 (366)
T ss_dssp CCCCHHHHHHHHHCHHHHHHHHHHHTSCCCCCTTTHHHHHHHHHHHHHHHHHHHHHHTTTSCSSSCSEEEEEEEEEECSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECC
T ss_conf 97620778877632577664000457899874223475431189999999865411468756654775645999998079
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~f~~G~~~Pv~vRfS~~~G~~D~~~d~RG~AiKf~~~~ge~~~D~v~~n~pvF~~rd~~~F~~~~~a~k~~p~ 160 (366)
T d1u5ua_ 81 PKFPEHEFFTAGRTFPARLRHANLKYPDDAGADARSFSIKFADSDSDGPLDIVMNTGEANIFWNSPSLEDFVPVEEGDAA 160 (366)
T ss_dssp CCSCCCSSSCTTCEEEEEEEEEBSSCSCTTSEECBEEEEESSSSSSCCSCEEEEEESSSCSCCSHHHHHHHTTCCTTHHH
T ss_pred CHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCHH
T ss_conf 01655876179975679999258888865567877369987658987325786337774304798886888860587637
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~f~~~~Pe~~~~~~~~~r~~P~s~~~~~y~s~~tf~fvn~~G~~~yvK~~~~P~~~~~~~~~e~~~~~~~~~~~~~~~~ 240 (366)
T d1u5ua_ 161 EEYVYKNPYYYYNLVEALRRAPDTFAHLYYYSQVTMPFKAKDGKVRYCRYRALPGDVDIKEEDESGRLTEEEQRKIWIFS 240 (366)
T ss_dssp HHHHTTCHHHHHHHHHHCEESCSCGGGCCEECCSCEEEECTTCCEEEEEEEEEESSSCCCGGGCTTCCCHHHHTTTTCCS
T ss_pred HHHHHCCHHHHHHHHHHCCCCCCCCCCCCEECCCCEEEECCCCCEEEEEEEEEECCCCCCCCHHHHHCCCHHHHHHHCCC
T ss_conf 89987098999999985577999834475002261787847898899999998457776642444323722344321246
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~d~Lr~dl~~~l~~g~~~~~l~vQl~~~~d~d~~~i~D~Tk~Wpe~~~P~~~vG~ltl~~~~~~~e~EqlaF 320 (366)
T d1u5ua_ 241 RHENEKRPDDYLRKEYVERLQKGPVNYRLQIQIHEASPDDTATIFHAGILWDKETHPWFDLAKVSIKTPLSPDVLEKTAF 320 (366)
T ss_dssp CCTTCCSCTTHHHHHHHHHHHHSCEEEEEEEEEEECCTTCCGGGGCTTSCCCTTTSCCEEEEEEEEEEECCHHHHHHCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHCC
T ss_conf 54102576377899999998679954999999546354789998887516886567637879999799897057576524
Q ss_pred ---------------------------------------------C
Q ss_conf ---------------------------------------------9
Q 000711 482 ---------------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------------s 482 (1338)
.
T Consensus 321 ~P~~~~pgi~~~~~~~~~d~~si~~~R~~vY~~s~~~R~~~~~~~~ 366 (366)
T d1u5ua_ 321 NIANQPASLGLLEAKSPEDYNSIGELRVAVYTWVQHLRKLKIGSLV 366 (366)
T ss_dssp CTTCCCTTSCCCCCSSSSSTTHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 8755699837778522243442888999999999998754501569
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=27547.44 Aligned_cols=1 Identities=100% Similarity=-0.726 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~r~~~~~~~~~~~i~~~g~~~i~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~a 80 (366)
T d2aeua1 1 LRLEKARKIILEILNEKGRDALYDLSGLSGGFLIDEKDKALLNTYIGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSA 80 (366)
T ss_dssp CCCCHHHHHHHHHHHHTCGGGCEECSSCCCCCCCCHHHHHHHTSTTHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHH
T ss_pred CCHHHHHHHHHHHHCHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHH
T ss_conf 96366788899985633330275432688888864889999998438245689999999987068984479996889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~l~al~~~~~vi~~~~~~~~~~~~~~~~l~g~~~v~~~d~e~l~~~i~~~tk~i~~~~p~n~~~~~~~~l~~i~~ia 160 (366)
T d2aeua1 81 ILATILALKPKKVIHYLPELPGHPSIERSCKIVNAKYFESDKVGEILNKIDKDTLVIITGSTMDLKVIELENFKKVINTA 160 (366)
T ss_dssp HHHHHHHHCCSEEEEECSSSSCCTHHHHHHHHTTCEEEEESCHHHHHTTCCTTEEEEEECBCTTSCBCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCEEECCCCHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 99999983899979994699862419988976288677799999999736877607999945888867879999999874
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~i~De~y~~~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~~G~i~~~~~~i~~~~~~~~~~g~~~~~~~~~a~~ 240 (366)
T d2aeua1 161 KNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIY 240 (366)
T ss_dssp HHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSSCSCEEEEEEHHHHHHHHHHHHTTTCBCCHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCHHHCCCEEEEECCCCCCCCCCEEEEEECHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 00817899956721432364468987662861787136444545521589706778999999972235568779899888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~aL~tl~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ll~~~gV 320 (366)
T d2aeua1 241 RALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGI 320 (366)
T ss_dssp HHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHCE
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCEEECCCCHHHHHHHHHHHCCE
T ss_conf 89986049999999999999999988604111133566667543457630110477760102456879999999981988
Q ss_pred ---------------------------------------------C
Q ss_conf ---------------------------------------------9
Q 000711 482 ---------------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------------s 482 (1338)
+
T Consensus 321 ~~ip~~~~p~~~~~lRis~~~~~~~~i~~d~l~~ai~~~lK~~~~~ 366 (366)
T d2aeua1 321 ITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKMAFKS 366 (366)
T ss_dssp ECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCCCCCEEEEECCCCCHHHCCHHHHHHHHHHHHHHHHCC
T ss_conf 9997898889998799951655411089999999999999998459
|
| >d1fn9a_ d.196.1.1 (A:) Outer capsid protein sigma 3 {Reovirus [TaxId: 10891]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Outer capsid protein sigma 3 superfamily: Outer capsid protein sigma 3 family: Outer capsid protein sigma 3 domain: Outer capsid protein sigma 3 species: Reovirus [TaxId: 10891]
Probab=100.00 E-value=0 Score=27481.71 Aligned_cols=1 Identities=0% Similarity=-1.025 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 MEVRlPNfHSvVE~I~nSYe~rp~~yst~egWd~~~f~~PDVIkVG~AYCCaQCCGVLGapp~~~~~FPHHrCHQq~~R~ 80 (365)
T d1fn9a_ 1 MEVCLPNGHQVVDLINNAFEGRVSIYSAQEGWDKTISAQPDMMVCGGAVVCMHCLGVVGSLQRKLKHLPHHRCNQQIRHQ 80 (365)
T ss_dssp CCCCCCCHHHHHHHHHHHTTTCCCEEBTTTBTCCSSCCCCSEEEETTEEEETTTTEEEEEGGGTCCSCCCCCCCCCCCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHC
T ss_conf 96446771149999998874577644520131454314876599867587400154336786678607613676776404
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 dtPLLrfvgRvTaH~KRgmLd~~a~~~~~i~D~~~e~~~rv~~egg~lvE~~~~~lD~~s~~~SI~sdWT~PLe~~~dlD 160 (365)
T d1fn9a_ 81 DYVDVQFADRVTAHWKRGMLSFVAQMHEMMNDVSPDDLDRVRTEGGSLVELNWLQVDPNSMFRSIHSSWTDPLQVVDDLD 160 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCCEEEECCGGGSSTTSTTTCTTCCTTSCCCCCTTHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHCCCCCCHHCCCCCC
T ss_conf 75577655578887765279999999999873077776676636886331333421606653334304677201014420
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 tr~D~~~tal~~MIDsSdl~pnf~mrdpshafngvkl~gdarqt~fsrtf~~rsslewgvmvydysele~dp~kgr~yr~ 240 (365)
T d1fn9a_ 161 TKLDQYWTALNLMIDSSDLIPNFMMRDPSHAFNGVKLGGDARQTQFSRTFDSRSSLEWGVMVYDYSELEHDPSKGRAYRK 240 (365)
T ss_dssp HHHHHHHHHHHHHHHHTTCEESSEESCTHHHHTTSCBCGGGGGCCCCSSCCTTSCCCCCCEEECCHHHHHCGGGCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHCCCEEECCCCCCCCCCCCCCCCCCEEEEEEEEEHHHHCCCCCCCCHHHH
T ss_conf 35789999888600165305332415833322662005740002000025776631444799765663368544502355
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 elvtpardfghfglshysrattp~lgkmpavfsgmltgnckmyp~i~gtak~kt~~kl~~avn~~wgvekirya~gpgg~ 320 (365)
T d1fn9a_ 241 ELVTPARDFGHFGLSHYSRATTPILGKMPAVFSGMLTGNCKMYPFIKGTAKLKTVRKLVEAVNHAWGVEKIRYALGPGGM 320 (365)
T ss_dssp HHTSTHHHHCCGGGCCCCEEECCCSTTCCEEECCGGGTSCCEEECCCHHHHHGGGHHHHHHHHHHSCHHHHHHHHCTTHH
T ss_pred HHCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCC
T ss_conf 53673021364441000223671002562565310147621431023620024378899987745403420221168863
Q ss_pred --------------------------------------------C
Q ss_conf --------------------------------------------9
Q 000711 482 --------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------s 482 (1338)
-
T Consensus 321 tgwy~rtmqqapivltpa~ltmfpdt~kfgd~~~pvmigdpmi~g 365 (365)
T d1fn9a_ 321 TGWYNRTMQQAPIVLTPAALTMFPDTIKFGDLNYPVMIGDPMILG 365 (365)
T ss_dssp HHHHHHHHHHHHHHTSCGGGGCCCSSCSSCSSSSCEEECCCEEEC
T ss_pred CHHHHHHHHHCCEEECHHHHCCCCCCCCCCCCCCCEECCCCCCCC
T ss_conf 324443453088673468850277742135667863317864369
|
| >d1um0a_ d.258.1.1 (A:) Chorismate synthase, AroC {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Chorismate synthase, AroC superfamily: Chorismate synthase, AroC family: Chorismate synthase, AroC domain: Chorismate synthase, AroC species: Helicobacter pylori [TaxId: 210]
Probab=100.00 E-value=0 Score=27478.68 Aligned_cols=1 Identities=0% Similarity=-0.859 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 Mns~G~~~r~tt~GESHG~~ig~vIdG~PaGl~i~~e~I~~~L~RR~pG~~~~~t~R~E~D~veilSGv~~G~TtG~PI~ 80 (365)
T d1um0a_ 1 MNTLGRFLRLTTFGESHGDVIGGVLDGMPSGIKIDYALLENEMKRRQGGRNVFITPRKEDDKVEITSGVFEDFSTGTPIG 80 (365)
T ss_dssp CCEECSSSEEEECCSCCSSEEEEEEECCCBTCBCCHHHHHHHHHHHTTCCSSCCCHHHHSCEEEECSSEETTEECSSCEE
T ss_pred CCCCCCCEEEEEEECCCCCEEEEEEECCCCCCEECHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECEECCEECCCCCE
T ss_conf 98764422788515578884489992408688858999999986679999998766899982799027368826577405
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~I~N~d~~s~dy~~~~~~pRPGHAD~~~~~KYg~~D~RgggRsSaReTa~rVaaGaiAk~lL~~~gI~v~~~v~~IG~i 160 (365)
T d1um0a_ 81 FLIHNQRARSKDYDNIKNLFRPSHADFTYFHKYGIRDFRGGGRSSARESAIRVAAGAFAKMLLREIGIVCESGIIEIGGI 160 (365)
T ss_dssp EEEECCCSCCCCCCCCTTBCCTTSTHHHHHHHHCCCCCCCTTCSTHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEETTE
T ss_pred EEECCCCCCCCCHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC
T ss_conf 55414656751456664257777761111100785367888618899999999999999988875471589999944544
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~d~~~~~~m~~~I~~ak~~gDSvGG~ve~~~~gv~~~~g~P~GlG~P~f~kLda~LA~A~mSI 240 (365)
T d1um0a_ 161 KAKNYDFNHALKSEIFALDEEQEEAQKTAIQNAIKNHDSIGGVALIRARSIKTNQKLPIGLGQGLYAKLDAKIAEAMMGL 240 (365)
T ss_dssp ECSSCCHHHHHHSTTCBSCHHHHHHHHHHHHHHHHTTCCBCEEEEEEEEESSTTCCCCSCCSBTTTBCHHHHHHHHHHTS
T ss_pred CCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 45431011202444036872667888999999985188768668999855643444786557876421236999877425
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 pAvKgVE~G~Gf~~a~~~GSe~nD~~~~~~~~tN~aGGi~GGiSnG~pI~~rva~KP~sSI~~pq~Tvd~~~~e~~~~~~ 320 (365)
T d1um0a_ 241 NGVKAVEIGKGVESSLLKGSEYNDLMDQKGFLSNRSGGVLGGMSNGEEIIVRVHFKPTPSIFQPQRTIDINGNECECLLK 320 (365)
T ss_dssp TTEEEEEETTGGGGGGSBHHHHCCCEETTEESCCTTTTEETTEECSSCEEEEEEECCCSCCSSCEEEEBTTSCEEEECCC
T ss_pred CCEEEEEECCCHHHHHCCHHHHCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEEECCCCCCCCCCCCEECCCCEEEEEEC
T ss_conf 33235641454666652576506732478874567785105767887669999957875567755435779987776016
Q ss_pred --------------------------------------------C
Q ss_conf --------------------------------------------9
Q 000711 482 --------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------s 482 (1338)
-
T Consensus 321 gRhDpCivprA~~V~EAm~alvlaD~~L~~~~~~~~~~k~~~~~~ 365 (365)
T d1um0a_ 321 GRHDPCIAIRGSVVCESLLALVLADMVLLNLTSKIEYLKTIYNEN 365 (365)
T ss_dssp SCCCSCTHHHHHHHHHHHHHHHHHHHHHHGGGSBHHHHHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 988970726528999999999999999997563599999874179
|
| >d2pnwa1 b.52.1.4 (A:5-369) Membrane-bound lytic murein transglycosylase A, MLTA {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double psi beta-barrel superfamily: Barwin-like endoglucanases family: MLTA-like domain: Membrane-bound lytic murein transglycosylase A, MLTA species: Agrobacterium tumefaciens [TaxId: 358]
Probab=100.00 E-value=0 Score=27477.78 Aligned_cols=1 Identities=0% Similarity=-1.790 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 f~l~pvsf~~LPGW~~Dd~~~al~Af~~SC~~l~~~~~~~~~~~~~t~~~~~~~c~~a~~~~~~~~~~aR~Ffe~~F~py 80 (365)
T d2pnwa1 1 FSIDEVSFRDLPGWGQDDPRKLFPAMATILSHLRNAKPYRTGALGITAAELVSLLELAERGQVNSPEQARQFFETNSVPF 80 (365)
T ss_dssp CEEEECCGGGSTTGGGCCCTTHHHHHHHHHHHHTSSCCCCCCTTCCCHHHHHHHHHHHHHCCCCSHHHHHHHHHHHEEEE
T ss_pred CCCEECCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCEEE
T ss_conf 96337188778894112499999999999998721785545666778999999999998535699899999999718899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~v~~~~~~~Gl~TGYYEP~l~gS~~~~~~y~~PlY~~P~dLv~vdl~~f~~~l~~~~~~gR~~~~~~~py~~R~~I~~g~ 160 (365)
T d2pnwa1 81 RISPAQGKSGFVTAFYEPELEVSATPDDVWRYPIYRRPPELVDIDNDNRPDGFDPSYAFGKADEEGISYFPDRRAIDEGC 160 (365)
T ss_dssp EEEC----CEEEEEEEECEEEEESSCCSSSCEEEEBCCTTEEECCTTTCCTTCCTTCCEEEEETTEEECCCCHHHHHTTT
T ss_pred EECCCCCCCEEEEEEEEEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHCCC
T ss_conf 94048987536898667767000378988987744689531006622255434665302443168766777445554465
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 l~~~g~elaw~~d~vd~fflqIQGSgrv~l~dG~~~rv~yag~NG~pY~sigr~Li~~G~i~~~~~sm~~ir~wl~~nP~ 240 (365)
T d2pnwa1 161 LRGRGLEIAWARSKVDLFFVHVQGAARLVFPDGAIKRITYAAKAGHVFSPIGRLLLDRGELDPKTISMQTIRQWLADHPD 240 (365)
T ss_dssp TTTSSCEEEEESCHHHHHHHHHHTEEEEECTTSCEEEEEEEEECSCCCCCHHHHHHHTTCSCTTTCCHHHHHHHHHHCGG
T ss_pred CCCCCCEEEEECCHHHHHHHHHCCCEEEEECCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCHHHCCHHHHHHHHHHCHH
T ss_conf 46778623673685777886303617999089998999871678986505679998768878210799999999997969
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~ll~~N~syvFFr~~~~~~~~~Gp~Ga~gvpLtp~rSiAvD~~~~plG~p~~l~~~~~~~~~~~~~~~rl~~aqDTG 320 (365)
T d2pnwa1 241 EVDGVLWHNRSYIFFREADVAGLDMGPIAAAKVPLVAGRALAVDRLIHTFGLPFFIHAPTLTHLDDGKPFARLMLALDTG 320 (365)
T ss_dssp GHHHHHTTCCCCEEEEEC-------CCBCTTSSBCCTTTEEECCTTTCCTTCEEEEEETTCCTTTTTSCEEEEEEEEECC
T ss_pred HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEECCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECC
T ss_conf 99999860997599887788776789756137120125035405542578865999656777689987100669997446
Q ss_pred --------------------------------------------C
Q ss_conf --------------------------------------------9
Q 000711 482 --------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------s 482 (1338)
-
T Consensus 321 gAIkG~~R~D~f~G~G~~A~~~Ag~~~~~g~~~~Llpk~~~~r~~ 365 (365)
T d2pnwa1 321 SAIVGPARGDIFTGSGFEAGELAGTVRNEADFYILLPRIAAERYR 365 (365)
T ss_dssp TTCCSTTEEEEEEEESHHHHHHHHTCEEEEEEEEEEEHHHHGGGC
T ss_pred CCCCCCCCEEEEEECCHHHHHHHHCCCCCEEEEEEEECCHHHHCC
T ss_conf 523689726997408889998860768744799998734354439
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=100.00 E-value=0 Score=27474.35 Aligned_cols=1 Identities=0% Similarity=-1.324 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~L~~~i~~~i~~~G~i~f~~fM~~~LY~p~~GYY~~~~~iG~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~~~~ 80 (365)
T d1zkda1 1 IDQTALATEIKRLIKAAGPMPVWRYMELCLGHPEHGYYVTRDPLGREGDFTTSPEISQMFGELLGLWSASVWKAADEPQT 80 (365)
T ss_dssp CCSSHHHHHHHHHHHHHCSEEHHHHHHHHHHCTTTCTTTCC--------CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 97207899999999956985599999997079986344789978899886788734799999999999999997177766
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~~~i~w~~~~~~~~~~~g~iiaNE~fDA 160 (365)
T d1zkda1 81 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIRNIHWHDSFEDVPEGPAVILANEYFDV 160 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCSSEEEESSGGGSCCSSEEEEEESSGGG
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCEECCCHHHCCCCCEEEEECCCCCC
T ss_conf 16995188611788866554123311355405898435456778898874166540111474243558759993255755
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 lPv~~~~~~~~~~~E~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~G~~l~i 240 (365)
T d1zkda1 161 LPIHQAIKRETGWHERVIEIGASGELVFGVAADPIPGFEALLPPLARLSPPGAVFEWRPDTEILKIASRVRDQGGAALII 240 (365)
T ss_dssp SCCEEEEEETTEEEEEEEEECTTSCEEEEECSSCCTTCGGGSCGGGGGCCTTCEEEECCSHHHHHHHHHHHHHCEEEEEE
T ss_pred CCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHHCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 00128997475421322232255204776310212467763033443147886323565899998765666405653433
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 DYG~~~~~~~~~l~~~~~h~~~d~l~~pG~~DIT~~VnFs~L~~~~~~~g~~~~~~~tQ~~FL~~~GI~~~~~~l~~~~~ 320 (365)
T d1zkda1 241 DYGHLRSDVGDTFQAIASHSYADPLQHPGRADLTAHVDFDALGRAAESIGARAHGPVTQGAFLKRLGIETRALSLMAKAT 320 (365)
T ss_dssp EEEESSCCBCCCCEEECSSSEECTTSSTTSSEEECCEEHHHHHHHHHHTTCEEEEEEEHHHHHHHTTHHHHHHHHHHTSC
T ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECHHHHHHHHHHCCCCEECCCCHHHHHHHCCHHHHHHHHHCCCC
T ss_conf 10045554444203344443366213898753265118899999987458615234358999997889999999975399
Q ss_pred --------------------------------------------C
Q ss_conf --------------------------------------------9
Q 000711 482 --------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~~~~~~~~Li~p~~~~MGe~FKVl~~~~~~~~~~~gf~~~ 365 (365)
T d1zkda1 321 PQVSEDIAGALQRLTGEGRGAMGSMFKVIGVSDPKIETLVALSDD 365 (365)
T ss_dssp HHHHHHHHHHHHHHHCEETTEETTTEEEEEEECTTCCCCTTTTCC
T ss_pred HHHHHHHHHHHHHHCCCCCHHCCHHEEEEEEECCCCCCCCCCCCC
T ss_conf 889999999999726988100211279999817999988898999
|
| >d1u1ha2 c.1.22.2 (A:396-760) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: UROD/MetE-like family: Cobalamin-independent methionine synthase domain: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=0 Score=27474.68 Aligned_cols=1 Identities=0% Similarity=-0.194 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~lpTT~VGS~PRp~eLk~a~e~~~~G~is~eel~~~~~~ai~~~v 80 (365)
T d1u1ha2 1 EGVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTVELRRVRREYKAKKVSEEDYVKAIKEEIKKVV 80 (365)
T ss_dssp THHHHHTTTTSSCCCSSSCCHHHHHHHHHHHSCCCSSCBBCCSBCCCCSCCC-------------CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 96899988089865267983789999999847999986232477889989999999976699999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~Q~~aGidiItDGE~~r~d~~~~f~~~l~G~~~~~~~~~~~~~~~~~~~p~~~g~i~~~~~~~~~~~~~~~~~~~~~~k 160 (365)
T d1u1ha2 81 DLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTANGWVQSYGSRCVKPPVIYGDVSRPKAMTVFWSAMAQSMTSRPMK 160 (365)
T ss_dssp HHHHTTCCSBBCCBCTTCSCTTHHHHTTSTTEECCSSCCEEEETTEEECCCEECSCCCCCSCSSHHHHHHHTTSCSSCBE
T ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEECCCEEEECCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 99998479967639813035999999752670000464157469711066041475446676408999998850122234
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~i~gp~~l~~~~~~~~y~~~~e~~~dLa~ay~~el~~L~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~n~~~ 240 (365)
T d1u1ha2 161 GMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITN 240 (365)
T ss_dssp EEEECHHHHHHTSEECSSSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECTTTTTTCCSSGGGHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 45550368853126668899899999999999999999996699389957628764321242159999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~v~~~~~~g~~~~~~~~l~~l~vd~l~le~~~~~~~~l~~~~~~~p~~K~l~~GVVd~r~~~~E~~e~v~~ri 320 (365)
T d1u1ha2 241 CGVQDSTQIHTHMCYSHFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSSEEIADRV 320 (365)
T ss_dssp TTSCTTSEEEEEESCSCCTTTHHHHHTTCCSEEEECCSSSCGGGGGGTSSSSCCCSEEEECCSCTTSSSCCCHHHHHHHH
T ss_pred HCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHH
T ss_conf 43566655899732655412478885477420001103586278887775288998899888827999879999999999
Q ss_pred --------------------------------------------C
Q ss_conf --------------------------------------------9
Q 000711 482 --------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------s 482 (1338)
-
T Consensus 321 ~~a~~~v~~erl~lspdCGf~~l~~~~a~~KL~~lv~~a~~vr~e 365 (365)
T d1u1ha2 321 NKMLAVLEQNILWVNPDCGLKTRKYTEVKPALKNMVDAAKLIRSQ 365 (365)
T ss_dssp HHHHTTSCTTTBCBCCSSCCTTSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999973885539981888999799899999999999999999659
|
| >d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Pyruvate dehydrogenase E1-alpha, PdhA species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=0 Score=27477.48 Aligned_cols=1 Identities=0% Similarity=-0.327 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~p~ls~e~l~~~yr~M~l~R~~e~~~~~l~~qG~ig~~h~~~GqEa 80 (365)
T d1w85a_ 1 TFQFPFAEQLEKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEA 80 (365)
T ss_dssp CCCCCHHHHHHHHHHTCCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCCTTCHH
T ss_pred CCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
T ss_conf 98797433321022139769999999999885457999999999999999999999999999997799656008898699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~vg~~~~l~~~D~i~~~yR~hg~~la~G~~~~~~~~~~~G~~~g~~~~~~~~~~~~~~ivG~~~p~AvG~A~a~k~~~~ 160 (365)
T d1w85a_ 81 SQIASHFALEKEDFILPGYRDVPQIIWHGLPLYQAFLFSRGHFHGNQIPEGVNVLPPQIIIGAQYIQAAGVALGLKMRGK 160 (365)
T ss_dssp HHHHHHHTCCTTCEEECCSSCHHHHHHTTCCHHHHHHHHHTCGGGGCCCTTCCBCCCCCSTTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCCCEEEECCCCHHEEEECCCCHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 99999986797687631366112255569999999986279988667888755605533357666412567765643046
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvlfv~eNN~~aist~~~~~~~~~~~~~r~~~~Gi~~~~vDG~D~~~v~~ 240 (365)
T d1w85a_ 161 KAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYA 240 (365)
T ss_dssp SCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSCSCSGGGGGGTTCCEEEEETTCHHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHH
T ss_conf 88146631677643126888887764336674379997024333322202133211111012357617981440687999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~dd~~~~YR~~eEi~~w~~~DPI~~~~~~L~~~g~~~~~el~~i~~e~~~ 320 (365)
T d1w85a_ 241 AVKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELENEWAKKDPLVRFRKFLEAKGLWSEEEENNVIEQAKE 320 (365)
T ss_dssp HHHHHHHHHHTTSCCEEEEEECCCSSCSCSSCC------CHHHHHHHHTTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99999997423796179974134356667868863124774789998848989999999998799999999999999999
Q ss_pred --------------------------------------------C
Q ss_conf --------------------------------------------9
Q 000711 482 --------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------s 482 (1338)
-
T Consensus 321 eV~~A~~~A~~sP~P~~~~l~~~Vy~e~p~~l~eq~~~~~~~~~~ 365 (365)
T d1w85a_ 321 EIKEAIKKADETPKQKVTDLISIMFEELPFNLKEQYEIYKEKESK 365 (365)
T ss_dssp HHHHHHHHHHTSCCCCHHHHHHTSCSSCCHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
T ss_conf 999999999868998989998453238998899999999887469
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=100.00 E-value=0 Score=27476.79 Aligned_cols=1 Identities=0% Similarity=-0.194 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~k~~r~~l~fdDVllvP~~st~~s~~vdl~~~it~~~~~~iPIIsA~MDtV~~~~mA~~ls~~Gglgvlhr~~~~~ 80 (365)
T d1zfja1 1 SNWDTKFLKKGYTFDDVLLIPAESHVLPNEVDLKTKLADNLTLNIPIITAAMDTVTGSKMAIAIARAGGLGVIHKNMSIT 80 (365)
T ss_dssp CGGGGSSCCCCCCGGGEEECCCCCCSCGGGCCCCEEEETTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECCSSCHH
T ss_pred CCCCHHHHHCCCCCCEEEEECCCCCCCHHHCEEEEEEECCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCEEECCCCCHH
T ss_conf 97211223026880108985787776776726237964895268988978988768889999999779916974866789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 e~~~~~~~~~~~~~~~~v~aavGv~~~~~er~~~l~~agvd~ivID~A~G~s~~~~~~i~~ik~~~~~~~iIaGNV~T~e 160 (365)
T d1zfja1 81 EQAEEVRKVKRSEGRLLVAAAVGVTSDTFERAEALFEAGADAIVIDTAHGHSAGVLRKIAEIRAHFPNRTLIAGNIATAE 160 (365)
T ss_dssp HHHHHHHHHHHHTSCBCCEEEECSSTTHHHHHHHHHHHTCSEEEECCSCTTCHHHHHHHHHHHHHCSSSCEEEEEECSHH
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCHH
T ss_conf 98877665443037569999944681277899999986998899978865543214788999865887644411343489
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~a~~L~~aGaD~VkVGiG~Gs~CTTr~~tGvGvPq~sai~~~~~~~~~~~~~iIADGGi~~~GDi~KAla~GAd~VMlG~ 240 (365)
T d1zfja1 161 GARALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLGS 240 (365)
T ss_dssp HHHHHHHTTCSEEEECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEEST
T ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHCCCCEEEECC
T ss_conf 99999866976378640256445676301342242138999999997579569805884762066655321587898642
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~lAg~~EsPG~~~~~~g~~~k~~~Gm~s~~a~~~~~~~r~~~~~~~~~~~~~~eG~~~~v~~~G~~~~~~~~l~gglrs~ 320 (365)
T d1zfja1 241 MFAGTDEAPGETEIYQGRKYKTYRGMGSIAAMKKGSSDRYFQGSVNEANKLVPEGIEGRVAYKGAASDIVFQMLGGIRSG 320 (365)
T ss_dssp TTTTBSSCCCCEEEETTEEEEEEECTTSHHHHCC--------------CCCCCSBCEEEEECCBCHHHHHHHHHHHHHHH
T ss_pred HHCCCCCCCCCEEEECCEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 21046678974797778475552775557555456644434455443221224684478546787789999999999998
Q ss_pred --------------------------------------------C
Q ss_conf --------------------------------------------9
Q 000711 482 --------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------s 482 (1338)
-
T Consensus 321 m~y~G~~~l~e~~~~~~fv~vt~~~~~E~~~h~~~~~~~~~~y~~ 365 (365)
T d1zfja1 321 MGYVGAGDIQELHENAQFVEMSGAGLIESHPHDVQITNEAPNYSV 365 (365)
T ss_dssp HHHTTCSSHHHHHHHCCEEECCHHHHHHHSCCSSCCSSCBTTBC-
T ss_pred HHHCCCCCHHHHHHCCEEEEECCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 762487749999629889999922010258862577157899869
|
| >d3c8ya1 c.96.1.1 (A:210-574) Fe-only hydrogenase, catalytic domain {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Fe-only hydrogenase superfamily: Fe-only hydrogenase family: Fe-only hydrogenase domain: Fe-only hydrogenase, catalytic domain species: Clostridium pasteurianum [TaxId: 1501]
Probab=100.00 E-value=0 Score=27471.85 Aligned_cols=1 Identities=0% Similarity=-0.427 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~i~~v~~~l~~~~k~vV~siaP~~r~sla~~f~l~~~~~~~~kl~~~lk~LGF~~V~dt~~gad~~~~e~~~E~~~r~~~ 80 (365)
T d3c8ya1 1 HMDRVKNALNAPEKHVIVAMAPSVRASIGELFNMGFGVDVTGKIYTALRQLGFDKIFDINFGADMTIMEEATELVQRIEN 80 (365)
T ss_dssp CHHHHHHHHHCTTCEEEEEECGGGGGTGGGGGTCCSSCCCHHHHHHHHHHHTCSEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHC
T ss_conf 97899999968995899998927899999984899430028999999998699999983788899999999999999865
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~P~isS~CPg~V~yiEk~~PeLip~ls~v~SP~~~~g~liK~~~~~~~~~~~~~i~~V~I~PC~aKK~Ea~r~e~~~ 160 (365)
T d3c8ya1 81 NGPFPMFTSCCPGWVRQAENYYPELLNNLSSAKSPQQIFGTASKTYYPSISGLDPKNVFTVTVMPCTSKKFEADRPQMEK 160 (365)
T ss_dssp TCSCCEECCCCHHHHHHHHHHCGGGGGGBCCBCCHHHHHHHHHTTHHHHTTCCCGGGEEEEEEESCSHHHHHHTCTTSEE
T ss_pred CCCCCEEEECCHHHHHHHHHHCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHCCCCCCC
T ss_conf 89987598479899999999675653325678888999999999987876099911289999834643224542821245
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~dVD~VLT~~El~~~l~~~~i~~~~l~~~~~~~~~~~~s~~g~~~~~sGG~~~~~~~~~~~~~~~~~~~~~~~~~~r 240 (365)
T d3c8ya1 161 DGLRDIDAVITTRELAKMIKDAKIPFAKLEDSEADPAMGEYSGAGAIFGATGGVMEAALRSAKDFAENAELEDIEYKQVR 240 (365)
T ss_dssp TTEESCSEEEEHHHHHHHHHHTTCCGGGCCCCCCCGGGTCCCHHHHTTTSTTHHHHHHHHHHHHHHHTCCCSCCCCGGGC
T ss_pred CCCCCCCEEEEHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEECC
T ss_conf 78987488953999999999759992238886668766777866512123663999999998774368865552024306
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 g~~~i~~~~~~~~~~~~~~~~v~G~~n~~~~l~~~k~~~~~~~fvEvmACpgGCinGgGq~~~~~~~~~~~~~~~~r~~~ 320 (365)
T d3c8ya1 241 GLNGIKEAEVEINNNKYNVAVINGASNLFKFMKSGMINEKQYHFIEVMACHGGCVNGGGQPHVNPKDLEKVDIKKVRASV 320 (365)
T ss_dssp SSCSEEEEEEEETTEEEEEEEEESHHHHHHHHHTSGGGSSCCCEEEEESSTTSGGGCTTSCCCCHHHHHHSCHHHHHHHH
T ss_pred CCCCEEEEEEEECCCEEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 87751899997089178999960299999999987459999728998068998707998688896013268999999998
Q ss_pred --------------------------------------------C
Q ss_conf --------------------------------------------9
Q 000711 482 --------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------s 482 (1338)
-
T Consensus 321 l~~~d~~~~~r~~~en~~~~~ly~~~l~~p~~~~~~~lLHT~y~~ 365 (365)
T d3c8ya1 321 LYNQDEHLSKRKSHENTALVKMYQNYFGKPGEGRAHEILHFKYKK 365 (365)
T ss_dssp HHHHHHHCSCCSGGGCHHHHHHHHHTTCSTTSHHHHHHSBCCCCC
T ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCC
T ss_conf 875430377788855999999999986799838999972687029
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=100.00 E-value=0 Score=27469.45 Aligned_cols=1 Identities=0% Similarity=-0.360 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~ 80 (365)
T d1jofa_ 1 PLHHLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHP 80 (365)
T ss_dssp CEEEEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEE
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCEEEECCCCCEEEEEECCCEEEEEEECCCCEEEEEEEC
T ss_conf 91199999314999899999858889389845445168999777999489899999938947899990899769876412
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~ 160 (365)
T d1jofa_ 81 IGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLY 160 (365)
T ss_dssp CCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred CCCCCEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCEEEEEEECCEECCCCCCCCCCCCCCCEEEEECCCCCEEE
T ss_conf 89986789987899879999932799789986745788742068664033004764675568898115978889999899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~ 240 (365)
T d1jofa_ 161 SADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIP 240 (365)
T ss_dssp EEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSC
T ss_pred EEECCCCEEEEEECCCCCCEEECCCEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEEEEECCCC
T ss_conf 82079987999970688716652511112788740899988998669995158998999995598753778731240245
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~ 320 (365)
T d1jofa_ 241 PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWS 320 (365)
T ss_dssp TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTC
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCEEEECCCC
T ss_conf 56556665444435776316998999978997135787542279999856887144676766777679986478964899
Q ss_pred --------------------------------------------C
Q ss_conf --------------------------------------------9
Q 000711 482 --------------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------------s 482 (1338)
-
T Consensus 321 G~~l~va~~~s~~v~v~~~~~~~l~~~~~~~vp~p~~~~~~~w~~ 365 (365)
T d1jofa_ 321 DEWMAITDDQEGWLEIYRWKDEFLHRVARVRIPEPGFGMNAIWYD 365 (365)
T ss_dssp TTEEEEECSSSCEEEEEEEETTEEEEEEEEECCSTTEEEEEEEEC
T ss_pred CCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEEEEECC
T ss_conf 999999967999499999828867278999889999976879639
|
| >d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Arginase/deacetylase superfamily: Arginase/deacetylase family: Histone deacetylase, HDAC domain: Histone deacetylase 8, HDAC8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27398.92 Aligned_cols=1 Identities=0% Similarity=-1.789 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~pvyiy~~~~~~~~~~hP~~P~R~~~~~~ll~~~gl~~~~~~v~p~~At~~el~~vHs~~Yi~~l~~~~~~~~~~~~~~ 80 (364)
T d1t64a_ 1 LVPVYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHPDS 80 (364)
T ss_dssp CCCEEECCHHHHHHHTCSSSSCCHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHHHHHCSSCCTTT
T ss_pred CCCEEEECHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCHH
T ss_conf 98869969888416799898829999999999974996688896889799899998299999999998604026444112
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~l~~d~p~~~~~~~~~~~~aG~~l~A~~~~~~g~~~~a~~~~gg~HHA~~~~a~GFC~~NdvaiA~~~~~~~~~RV~ 160 (364)
T d1t64a_ 81 IEYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERIL 160 (364)
T ss_dssp TTTTCBTTBCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTTTCSCEE
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCEEE
T ss_conf 01067888887703999999985028999999875986500345754464333444454555689999999985103079
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 iiD~DvHhGnGtq~iF~~d~~V~~~SiH~~~~~~~Pgtg~~~e~G~g~g~~~~~NvPL~~g~~d~~y~~~~~~~i~~~~~ 240 (364)
T d1t64a_ 161 YVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQ 240 (364)
T ss_dssp EEECSSSCCHHHHHHHTTCSSEEEEEEEECCTTCTTCCCCTTCCCCGGGTTCEEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 98523577776044420687544533345567778898873105876445632334125565738999999976678862
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~f~Pd~IvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~p~~~~~~GGY~~~~~ar~w~~~~~~l~g~~~~~~~P~ 320 (364)
T d1t64a_ 241 AFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPD 320 (364)
T ss_dssp HHCCSEEEEECCSTTBTTCTTCCCCBCHHHHHHHHHHHHTTCCEEEEECCCCCSHHHHHHHHHHHHHHHHTCCCCSBCCC
T ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 57998899989714778997778727998999999999835998799979888878999999999999859988866898
Q ss_pred -------------------------------------------C
Q ss_conf -------------------------------------------9
Q 000711 482 -------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------s 482 (1338)
.
T Consensus 321 ~~~~~~~~p~~~~~~~~~~~~~~n~~~~~~~i~~~i~~~l~~~~ 364 (364)
T d1t64a_ 321 HEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHVV 364 (364)
T ss_dssp CTTGGGGTTTCBSCCCCCSCCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 50155409973136686656566999999999999999987429
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=100.00 E-value=0 Score=27398.58 Aligned_cols=1 Identities=0% Similarity=-1.091 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~tP~ei~~~L~~~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvG 80 (364)
T d1um8a_ 1 LLSYIPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSG 80 (364)
T ss_dssp CCSCCCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSS
T ss_pred CCCCCCCHHHHHHHHCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC
T ss_conf 97779887999999589623808999999999998998887788764044443311112233456787532441899863
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 KTElAk~LA~~~~~~~ir~D~s~~~e~gyvg~dv~~~i~~l~~~~~~~v~~~~~~iv~lDEieK~~~~s~~~~~~~d~a~ 160 (364)
T d1um8a_ 81 KTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSG 160 (364)
T ss_dssp HHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------C
T ss_pred HHHHHHHHHHHCCCCEEEHHHHHCCCCHHHHHHHCCCHHHHHHHCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 78999999864435331112220144316676312103445420245899865463010166653134544555512214
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~V~~~lLqild~~~~~~~~~~gr~~~~~~~i~i~t~~i~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (364)
T d1um8a_ 161 EGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILH 240 (364)
T ss_dssp HHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGG
T ss_pred HHHHHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEEHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHC
T ss_conf 38898645540586122587778767764168996113455411131014566543014454310001100124666530
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~f~PEf~gRi~~iv~f~~L~~~~l~~Il~~~~~~l~kq~~~~l~~~gi~L~~td~a~~~la~~g~d~~~G 320 (364)
T d1um8a_ 241 LVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTG 320 (364)
T ss_dssp GCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCT
T ss_pred CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCC
T ss_conf 24578776530079999872301557402099999999879999999999998757927999899999999956587778
Q ss_pred -------------------------------------------C
Q ss_conf -------------------------------------------9
Q 000711 482 -------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------s 482 (1338)
|
T Consensus 321 AR~L~riie~~l~~~~f~~p~~~~~~v~I~~~~V~~~~~~~~i~ 364 (364)
T d1um8a_ 321 ARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLIIA 364 (364)
T ss_dssp GGGHHHHHHHHHHHHHHTGGGGTTSEEEECHHHHTTSSCCEEEC
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHCCCCCCEEEC
T ss_conf 36789999999999855587789999997778867998881439
|
| >d2jera1 d.126.1.6 (A:2-365) Agmatine iminohydrolase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pentein, beta/alpha-propeller superfamily: Pentein family: Porphyromonas-type peptidylarginine deiminase domain: Agmatine iminohydrolase species: Enterococcus faecalis [TaxId: 1351]
Probab=100.00 E-value=0 Score=27397.96 Aligned_cols=1 Identities=0% Similarity=0.105 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~tP~~~g~rmPaEwep~~~~~l~wP~~~~~w~~~~~~~~~~~~~i~~~ia~~e~V~v~~~~~~~~~~~~~~~~~ 80 (364)
T d2jera1 1 AKRIVGSTPKQDGFRMPGEFEPQEKVWMIWPERPDNWRDGGKPVQEAFTNVAKAISQFTPMNVVVSQQQFQNCRRQLPPE 80 (364)
T ss_dssp CCBCCSCCHHHHTCBCCCTTSCEEEEEEECCCCTTTSGGGGHHHHHHHHHHHHHHHTTSCEEEEECTTTHHHHHHHSCTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCC
T ss_conf 98456899111387748995500328997689985204677999999999999985887399997928999999757566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 v~~~~~~~dD~W~RD~GPi~v~~~~g~~~~vdf~FN~wG~k~~~~~~~~~~D~~~~~~ia~~~~~~~~~~~~lvlEGG~i 160 (364)
T d2jera1 81 ITVYEMSNNDAWVRDCGPSFVINDHGEIRGVDWTFNAWGGLVDGLYFPWDQDDLVAQKICEIEHVDSYRTDDFVLEGGSF 160 (364)
T ss_dssp SEEEECCCSSSCHHHHSCEEEECTTSCEEEEEEECCTTTHHHHCSSSCCTTGGGHHHHHHHHHTCCEEEEEEEECCGGGE
T ss_pred EEEEECCCCCHHHHCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEECCCCE
T ss_conf 49999368875764551389991677567633664687655555555410278999999998366544665737748966
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~dG~GtlltTe~~ll~~nRNp~ls~~~ie~~Lk~~LGv~~viwl~~gl~~DdTdGHID~~arFi~~~~il~~~~~d~~~ 240 (364)
T d2jera1 161 HVDGQGTVLTTEMCLLSEGRNPQLSKEAIEQKLCDYLNVEKVLWLGDGIDPEETNGHVDDVACFIAPGEVACIYTEDQNS 240 (364)
T ss_dssp EECSSSEEEEEHHHHTSTTTCTTSCHHHHHHHHHHHHTCSEEEEECCCSCTTTTSSCGGGTEEEEETTEEEEECCCCTTS
T ss_pred EECCCCEEEEEHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCC
T ss_conf 97799639975455514578999899999999999869863677658755677777754448994799569984388878
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~L~~~~da~G~~~~i~~lp~P~~~~~~~~~~~~~~~~~~~~~~~g~~l~aSY~Nfli~N~~VivP~fg~ 320 (364)
T d2jera1 241 PFYEAAQDAYQRLLKMTDAKGRQLKVHKLCCPVKNVTIKGSFKIDFVEGTMPREDGDICIASYMNFLITNDGVIVPQYGD 320 (364)
T ss_dssp TTHHHHHHHHHHHHTCBCTTCCBCEEEEECCCSSCEECCTTSCCCCCTTSCCCCTTCEECCCTTCCEEETTEEEEEECSC
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEECCCC
T ss_conf 35799999999997656534898558862689742333333344534575435689886202578999999999902798
Q ss_pred -------------------------------------------C
Q ss_conf -------------------------------------------9
Q 000711 482 -------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------s 482 (1338)
-
T Consensus 321 ~~D~~Al~~l~~~fP~r~Vv~I~~~~i~~~gG~iHCiT~q~P~~ 364 (364)
T d2jera1 321 ENDRLALEQVQTMFPDKKIVGVNTVEVVYGGGNIHXITQQEPKR 364 (364)
T ss_dssp TTHHHHHHHHHHHSTTSEEEEEECHHHHTTTCCTGGGCEEEECC
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECHHHHHCCCCCCHHHHCCCCC
T ss_conf 77899999999888899799971089875698014463127999
|
| >d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]
Probab=100.00 E-value=0 Score=27397.29 Aligned_cols=1 Identities=0% Similarity=-0.260 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~pLFsP~~ig~~~LkNRiv~apm~~~~a~~g~p~~~~~~~y~~rA~gGgliite~~~V~~~g~~~~~~~~l~~d~~ 80 (364)
T d1icpa_ 1 QVDKIPLMSPCKMGKFELCHRVVLAPLTRQRSYGYIPQPHAILHYSQRSTNGGLLIGEATVISETGIGYKDVPGIWTKEQ 80 (364)
T ss_dssp CCCCCGGGSCEEETTEEESCSEEECCCCCCCCGGGSCCHHHHHHHHHTCCTTCEEECCCEECSGGGCCSTTCCBCSSHHH
T ss_pred CCCCCCCCCCCEECCEEECCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCEEECCCCCCCCCCCEECHHHH
T ss_conf 99898899972489999678427524489858999797999999999983964999710788873357999853134344
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 i~~~k~l~~~ih~~g~~~~~QL~H~Gr~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f 160 (364)
T d1icpa_ 81 VEAWKPIVDAVHAKGGIFFCQIWHVGRVSNKDFQPNGEDPISCTDRGLTPQIMSNGIDIAHFTRPRRLTTDEIPQIVNEF 160 (364)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECCTTSSCTTTSGGGCCCEESSSCCCCCEECTTSSCEECCCCCEECCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 45677888886237882577640477554554445788875323456531112346565678887311066799999988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~aA~rA~~AGfDgVeIH~ahGyLl~QFlSp~tN~RtDeYGGsleNR~Rf~~Eii~aIr~~~g~~~i~~r~s~~~~~~~~ 240 (364)
T d1icpa_ 161 RVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYNEA 240 (364)
T ss_dssp HHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTC
T ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHCEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC
T ss_conf 99999999839986898305762131200110077675444204320167898765420124886466886043224677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 g~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~vi~~g~~~~~~ae~~l~~g~aD~V~~ 320 (364)
T d1icpa_ 241 GDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRKAYKGTFIVAGGYDREDGNRALIEDRADLVAY 320 (364)
T ss_dssp CCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC------CCCCSHHHHHHCCSCEEEESSCCHHHHHHHHHTTSCSEEEE
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCCEEHH
T ss_conf 67516777889987752032245665158655455455447889999986478789978989999999998699765056
Q ss_pred -------------------------------------------C
Q ss_conf -------------------------------------------9
Q 000711 482 -------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------s 482 (1338)
-
T Consensus 321 gR~~iadPd~~~k~~~g~pi~~~~~~~~~~~~~~~g~~~~p~~~ 364 (364)
T d1icpa_ 321 GRLFISNPDLPKRFELNAPLNKYNRDTFYTSDPIVGYTDYPFLE 364 (364)
T ss_dssp SHHHHHCTTHHHHHHHTCCCCCCCGGGSSCCCSSTTTTCSCCCC
T ss_pred HHHHHHCCCHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCC
T ss_conf 79999790499999709998988611342799998848798889
|
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin heavy chain-like protein species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=100.00 E-value=0 Score=27397.10 Aligned_cols=1 Identities=0% Similarity=-0.293 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 rIkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~v~~lv~~~l~G~n~~i~a 80 (364)
T d1sdma_ 1 KIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFEDTKYLVQSAVDGYNVCIFA 80 (364)
T ss_dssp CCEEEEEECCCCHHHHHTTCCBCEEECSTTEEEEECSSSSEEEEECSEEECTTCCHHHHHHTTTHHHHHHHTTCEEEEEE
T ss_pred CEEEEEECCCCCHHHCCCCCCCEEEECCCCEEEECCCCCCCEEEECCEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 96999992789936622589875996799758735789985477788564999998999998999999996698503552
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 YGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~~S~~EIyne~i~DLL~~~~~~~~~l~~~~~~~~~~ 160 (364)
T d1sdma_ 81 YGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMV 160 (364)
T ss_dssp ECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEESSSCEEETTSCTTSCCCCCEEEECTTSCE
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCC
T ss_conf 23478776201656766551367899998865531034655369999888723632233576545554433133146760
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRsH~i~~i~v~~~~~~~~~~~~~kl~~vDLAGsEr~~~~~~ 240 (364)
T d1sdma_ 161 SVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGSERVKKSGS 240 (364)
T ss_dssp EEETCCCEEECSHHHHHHHHHHHHHHHCCCSSCTTCHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECCCCSCCCC---
T ss_pred CCCCCEEEEECCHHHHHHHHHCCCEEECCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEEEECHHHCCCCCCCCC
T ss_conf 20353000117788978986406600044534354103336359999999703676503567998404100352001466
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~g~~~~E~~~iN~SL~~L~~vi~aL~~~~~~ipyR~SkLT~lL~d~Lggns~t~~I~~isp~~~~~~eTl~TL~fa~~ak 320 (364)
T d1sdma_ 241 AGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVR 320 (364)
T ss_dssp ------CCCTTCHHHHHHHHHHHHHHHTCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 67502332335643206899999997499757730112138878634999509999996987001899999999999984
Q ss_pred -------------------------------------------C
Q ss_conf -------------------------------------------9
Q 000711 482 -------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------s 482 (1338)
-
T Consensus 321 ~i~n~p~~n~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~l~~e 364 (364)
T d1sdma_ 321 SIVNDPSKNVSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364 (364)
T ss_dssp TCCCCCCCCEECHHHHHHHTTTTCC-----------CCEECCCC
T ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC
T ss_conf 20667835579899999999999999998744027799997559
|
| >d1kbla1 c.1.12.2 (A:510-873) Pyruvate phosphate dikinase, C-terminal domain {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate phosphate dikinase, C-terminal domain domain: Pyruvate phosphate dikinase, C-terminal domain species: Clostridium symbiosum [TaxId: 1512]
Probab=100.00 E-value=0 Score=27396.30 Aligned_cols=1 Identities=0% Similarity=-1.191 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~waD~~r~~~v~aN~~~~~d~~~A~~~GAdGIGL~RTEflfl~~~~~p~~~~~~~~~~~e~~~~ 80 (364)
T d1kbla1 1 IETQEASVSGSFERIMVWADKFRTLKVRTNADTPEDTLNAVKLGAEGIGLCRTEHMFFEADRIMKIRKMILSDSVEAREE 80 (364)
T ss_dssp CCEECCCCCHHHHHHHHHHHHHCCSEEEEECCSHHHHHHHHHTTCCSEEEECCTHHHHSHHHHHHHHHHHHCCSHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHH
T ss_conf 99768887448999999877467107998289999999999769971548888998727876540566663367266799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~q~~~y~~i~~~~~g~pvtiRtlD~g~dk~~p~~~~~~~~~~~~lg~~~~~~~~~~~~~~E~NP~LG~RGiR~ 160 (364)
T d1kbla1 81 ALNELIPFQKGDFKAMYKALEGRPMTVRYLDPPLHEFVPHTEEEQAELAKNMGLTLAEVKAKVDELHEFNPMMGHRGCRL 160 (364)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTCCEEEECCCSCGGGGSCCSHHHHHHHHHHHTCCHHHHHHHHHHHCCSCGGGSSCTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 99998887877899999860898679851568864467873156899998739987887665424455784224433213
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~l~~p~lf~~QlrAilrA~~~~~~~~g~~~~~~Im~Pmv~~~~E~~~~k~~i~~~~~~l~~~~~~~~~~~iG~MiE~Psa 240 (364)
T d1kbla1 161 AVTYPEIAKMQTRAVMEAAIEVKEETGIDIVPEIMIPLVGEKKELKFVKDVVVEVAEQVKKEKGSDMQYHIGTMIEIPRA 240 (364)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECSCCSHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEEECSHHH
T ss_pred EEECCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHH
T ss_conf 42665236888999999999978843875431441131304999999998888899997530387766148775011599
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 al~~d~~~~~vDF~SIGTNDLtQy~la~dRd~~~~~l~~y~~~~i~~~dP~~~~~~~av~~lI~~~~~~~~~~~~~i~vs 320 (364)
T d1kbla1 241 ALTADAIAEEAEFFSFGTNDLTQMTFGFSRDDAGKFLDSYYKAKIYESDPFARLDQTGVGQLVEMAVKKGRQTRPGLKCG 320 (364)
T ss_dssp HHTHHHHTTTCSEEEECHHHHHHHHHTCCHHHHHHHHHHHHHTTSCSSCTTTSCCTTTHHHHHHHHHHHHHHHCTTCEEE
T ss_pred HHHHHHHHHHCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 97189987327679963306878887433253255665554420022375104406999999999999999737998699
Q ss_pred -------------------------------------------C
Q ss_conf -------------------------------------------9
Q 000711 482 -------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------s 482 (1338)
.
T Consensus 321 iCGE~asdp~~~~~L~~lGi~~lS~sp~~vp~~r~a~aqa~~~~ 364 (364)
T d1kbla1 321 ICGEHGGDPSSVEFCHKVGLNYVSCSPFRVPIARLAAAQAALNN 364 (364)
T ss_dssp ECSGGGGSHHHHHHHHHTTCSEEEECGGGHHHHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHCC
T ss_conf 71731159999999998699989978046699999999987439
|
| >d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: G-protein coupled receptor kinase 2 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=0 Score=27394.54 Aligned_cols=1 Identities=0% Similarity=-1.523 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 lslddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~ 80 (364)
T d1omwa3 1 LTMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPD 80 (364)
T ss_dssp CCSTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSS
T ss_pred CCHHHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECC
T ss_conf 97776851018842889099999999999799999984587542667999999999999985089985889999999899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~ivmE~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~ylH~~~iiHrDlKP~NILl~~~g~iKl~DFGla~~~~~~ 160 (364)
T d1omwa3 81 KLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK 160 (364)
T ss_dssp EEEEEECCCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSSSCEEECCCTTCEECSSS
T ss_pred EEEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCEEEECCCCCEEEEEECEEEECCCC
T ss_conf 88999991489838999873255327899999999999999999779622044422167858896798220102333788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li 240 (364)
T d1omwa3 161 KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLL 240 (364)
T ss_dssp CCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSSCHHHHHHHSSSCCCCCCSSSCHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 64331134554216876038999844104677899999985999888899899999998604688878877899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~L~~dP~~R~t~~~~~a~eil~Hp~f~~i~~~~~~~~~~~~p~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 320 (364)
T d1omwa3 241 EGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVFLQKYPPPLIPPRGEVNAADAFDIGSFDEEDTKGIKLLDSDQEL 320 (364)
T ss_dssp HHHTCSSTTTSTTTSSSTHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCC--------------------CCCCSSSSGG
T ss_pred HHHCCCCHHHHCCCCCCCHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHH
T ss_conf 99856698880887435799997491023789879962889959379988888687454665881011379889757899
Q ss_pred -------------------------------------------C
Q ss_conf -------------------------------------------9
Q 000711 482 -------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~q~~~ 364 (364)
T d1omwa3 321 YRNFPLTISERWQQEVAETVFDTINAETDRLEARKKTKNKQLGH 364 (364)
T ss_dssp GTTCCEECHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCC
T ss_conf 84687657637788888876644526578888642271633389
|
| >d1kq3a_ e.22.1.2 (A:) Glycerol dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Glycerol dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=27393.85 Aligned_cols=1 Identities=0% Similarity=-1.158 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~m~~~~~~P~rii~G~gal~~l~~~l~~~g~r~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~v~~~~~~~~~i~~~~~~~ 80 (364)
T d1kq3a_ 1 HMITTTIFPGRYVQGAGAINILEEELSRFGERAFVVIDDFVDKNVLGENFFSSFTKVRVNKQIFGGECSDEEIERLSGLV 80 (364)
T ss_dssp CCCBCCCCCSEEEEETTGGGGHHHHHHTTCSEEEEEECHHHHHHTTCTTGGGGCSSSEEEEEECCSSCBHHHHHHHHTTC
T ss_pred CCCCCEECCCCEEEECCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHH
T ss_conf 99755778978798059999999999973993899989865564799999998886698699618989807999999975
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~D~IIavGGGs~~D~aK~ia~~~~~P~I~IPTTa~tgse~t~~avi~~~~~~~k~~~~~~~~P~~viiDp~l~~t~P 160 (364)
T d1kq3a_ 81 EEETDVVVGIGGGKTLDTAKAVAYKLKKPVVIVPTIASTDAPCSALSVIYTPNGEFKRYLFLPRNPDVVLVDTEIVAKAP 160 (364)
T ss_dssp CTTCCEEEEEESHHHHHHHHHHHHHTTCCEEEEESSCCCSCTTSSEEEEECTTSCEEEEEECSSCCSEEEEEHHHHHHSC
T ss_pred HCCCCEEEEECCCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCEEEECCHHHHHHH
T ss_conf 20576899813675410101223334210124225433332446513786326775311200244533887716666435
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 240 (364)
T d1kq3a_ 161 ARFLVAGMGDALATWFEAESCKQKYAPNMTGRLGSMTAYALARLCYETLLEYGVLAKRSVEEKSVTPALEKIVEANTLLS 240 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCBCTTSSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88886217888653777765554214001015555568999999999999988887777640337999999999877875
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 g~~~~~~~~~~~H~~~~~~~~~~~~~~~~HG~~va~~~~~~~~~~~~~~~~~~~i~~l~~~lglP~~L~elGi~~~~~~~ 320 (364)
T d1kq3a_ 241 GLGFESGGLAAAHAIHNGLTVLENTHKYLHGEKVAIGVLASLFLTDKPRKMIEEVYSFCEEVGLPTTLAEIGLDGVSDED 320 (364)
T ss_dssp HHHHHHHCCCHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTCCCSGGGGTCTTCCHHH
T ss_pred HCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHH
T ss_conf 34213445566520002254523764202107899889999875406799999999999985999989992999998999
Q ss_pred -------------------------------------------C
Q ss_conf -------------------------------------------9
Q 000711 482 -------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------s 482 (1338)
-
T Consensus 321 l~~ia~~a~~~~~~~~~~P~~~t~edi~~il~~A~~~~~~~~~~ 364 (364)
T d1kq3a_ 321 LMKVAEKACDKNETIHNEPQPVTSKDVFFALKAADRYGRMRKNL 364 (364)
T ss_dssp HHHHHHHHTCTTSGGGGSSSCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999998727775658996899999999999999998875579
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=27393.65 Aligned_cols=1 Identities=100% Similarity=0.770 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~n~~~~~~~~~l~~~a~~a~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~g~e~~~~t~g~t~a~~~~~~ 80 (364)
T d2e7ja1 1 DFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMH 80 (364)
T ss_dssp CCEECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSSEEEEESSHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH
T ss_conf 97566841027968999999999984477510034666411135708999999999998695979997969999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 al~~~gd~Vi~~~~~h~s~~~~~~~~g~~v~~v~~~~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~l~ 160 (364)
T d2e7ja1 81 SLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVK 160 (364)
T ss_dssp HHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHH
T ss_pred HHHCCCCEEEEECCCCCCCCHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEECCH
T ss_conf 98679967974046431110688851211798630356433257999976655410467716999605779984552311
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~I~~ia~~~~i~livD~a~~~g~~~~~~~~~g~D~~~~S~~K~~~~~g~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (364)
T d2e7ja1 161 KIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGC 240 (364)
T ss_dssp HHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTC
T ss_pred HHEECCCCCCCHHHCCCCCHHHHHHHCCCCCCCCEEEECCCCCCCCCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 00000023321111144323444320133332213530331012788888999988799999985156657663333310
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (364)
T d2e7ja1 241 TARGATIITLMASFPHVRERIKRWDEEVEKARRFAAEMEKLGIKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRE 320 (364)
T ss_dssp CCCSHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHTTCEEESSSSCCSSEEEEECHHHHHHHHHSSSGGGHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHH
T ss_conf 03235799999999988999999987777788999999975986457888876559983541477789753256677988
Q ss_pred -------------------------------------------C
Q ss_conf -------------------------------------------9
Q 000711 482 -------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------s 482 (1338)
|
T Consensus 321 l~~~~~~~~~~g~~~~~~~~~~~~t~edid~~~~~l~ei~~~ys 364 (364)
T d2e7ja1 321 LKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEKYS 364 (364)
T ss_dssp HHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHCCCCEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 87658713457876269980567999999999999999999759
|
| >d1us3a2 c.1.8.3 (A:243-606) Xylanase 10c {Cellvibrio japonicus [TaxId: 155077]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Xylanase 10c species: Cellvibrio japonicus [TaxId: 155077]
Probab=100.00 E-value=0 Score=27392.57 Aligned_cols=1 Identities=0% Similarity=0.105 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~l~~~~~~~f~~G~av~~~~~~~~~~~~~~~~~~~~~~~fn~~t~eN~mKW~~iep~~G~~nf~~~D~~v~~a 80 (364)
T d1us3a2 1 AYSANVDHLRDLAPSDFPIGVAVSNTDSATYNLLTNSREQAVVKKHFNHLTAGNIMKMSYMQPTEGNFNFTNADAFVDWA 80 (364)
T ss_dssp CCCCCCSCGGGGCSSSCCEEEEEBCTTCTTTBTTTCHHHHHHHHHHCSEEEESSTTSHHHHCSBTTBCCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCEEEECCCCCHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 97564358999703689478885276555422246778999999768823165467768855889836838999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~gi~v~GH~lvW~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~vv~ry~~~G~I~~WDVvNEp~~~~~~~~~~~~~~~~ 160 (364)
T d1us3a2 81 TENNMTVHGHALVWHSDYQVPNFMKNWAGSAEDFLAALDTHITTIVDHYEAKGNLVSWDVVNEAIDDNSPANFRTTDSAF 160 (364)
T ss_dssp HHTTCEEEEEEEEECCGGGSCHHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCBCSSSSCCBCCTTCHH
T ss_pred HHCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCHH
T ss_conf 98889899950687865578643235786579999999999999987524688357999860444578876556666437
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~g~~~~~i~~Af~~Ar~~~p~a~l~~ndy~~~~~~~~~~~~~~~v~~l~~~g~~idgiG~Q~H~~~~~p~~~~i~~~ 240 (364)
T d1us3a2 161 YVKSGNSSVYIERAFQTARAADPAVILYYNDYNIEQNNAKTTKMVDMVKDFQARSIPIDGVGFQMHVCMNYPSIANISAA 240 (364)
T ss_dssp HHHTTSCSHHHHHHHHHHHHHCTTSEEEEEESSTTSCSHHHHHHHHHHHHHHHTTCCCCEEEECCEEESSCSCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHH
T ss_conf 77708833999999999998640343211565334663134678999999986899655532410025799998999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 l~~~~~~g~~I~iTEldi~~~~~~~~~~~~~~~~~~~~~~~~~QA~~~~~~~~~~~~~~~~~~~~~vt~Wg~~D~~sW~~ 320 (364)
T d1us3a2 241 MKKVVDLGLLVKITELDVAVNQPHCDAYPANKINPLTEAAQLAQKKRYCDVVKAYLDTVPVNQRGGISVWGTTDANTWLD 320 (364)
T ss_dssp HHHHHTTTCEEEEEEEEEESSCTTSTTTTTTCCCSCCHHHHHHHHHHHHHHHHHHHHHSCGGGEEEEEESCSBGGGCHHH
T ss_pred HHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCC
T ss_conf 99998549905887404741467665444444688875899999999999999998455623455699815874876556
Q ss_pred -------------------------------------------C
Q ss_conf -------------------------------------------9
Q 000711 482 -------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~~~~~~~~~~lL~d~d~~pKPAy~av~~~L~g~~~~~~~ 364 (364)
T d1us3a2 321 GLYREQFEDEKISWPLLFDNNYNDKPALRGFADALIGTQCTNTH 364 (364)
T ss_dssp HHTTTTTTTCCCCCCSSBCTTSCBCHHHHHHHHHHHTCCCCSCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 87777666666687866889989988999999997799887889
|
| >d1oc7a_ c.6.1.1 (A:) Cellobiohydrolase II (Cel6) {Humicola insolens, Cel6a [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: 7-stranded beta/alpha barrel superfamily: Glycosyl hydrolases family 6, cellulases family: Glycosyl hydrolases family 6, cellulases domain: Cellobiohydrolase II (Cel6) species: Humicola insolens, Cel6a [TaxId: 34413]
Probab=100.00 E-value=0 Score=27392.43 Aligned_cols=1 Identities=0% Similarity=-0.759 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
+
T Consensus 1 ~p~~gNPf~g~~~yvnP~~~~~v~~~a~~~~~d~~~~a~~~~va~~Pta~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 80 (364)
T d1oc7a_ 1 APYNGNPFEGVQLWANNYYRSEVHTLAIPQITDPALRAAASAVAEVPSFQWLDRNVTVDTLLVQTLSEIREANQAGANPQ 80 (364)
T ss_dssp CCCCSCTTTTCEECCCHHHHHHHHHTTGGGCCCHHHHHHHHHHTTSCCCEEECSGGGTTTHHHHHHHHHHHHHHTTCSSC
T ss_pred CCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 99789988898332474077899999873468988999999985378279711477777522778999999987214788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~lVvY~iP~RDC~a~as~Ge~~~~~~g~~~y~~Yid~I~~~~~~~~~~~~vvIlEPDsL~nlvt~~~~~~c~~~~~~ 160 (364)
T d1oc7a_ 81 YAAQIVVYDLPDRDCAAAASNGEWAIANNGVNNYKAYINRIREILISFSDVRTILVIEPDSLANMVTNMNVPKCSGAAST 160 (364)
T ss_dssp EEEEEEECCCTTCSTTSSSCCCCCCGGGTHHHHHHHHHHHHHHHHHHTTTSCEEEEECTTSTHHHHHCTTSHHHHHHHHH
T ss_pred CEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCHHHHHHHHH
T ss_conf 51389994799987320004897545766468899999999999975688634999777622223306880666778999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~i~yAi~~l~~pnv~vYlDaGhsgWLgw~~n~~~~a~~~a~~l~~ag~~~~vrGFatNvsNy~~~~~~~~~~~~~~n 240 (364)
T d1oc7a_ 161 YRELTIYALKQLDLPHVAMYMDAGHAGWLGWPANIQPAAELFAKIYEDAGKPRAVRGLATNVANYNAWSVSSPPPYTSPN 240 (364)
T ss_dssp HHHHHHHHHHHTCCTTEEEEEECCCTTTTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESTTCCCCSSCSSCCGGGTTC
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 99999999997169973899978877666760001268999999998647864343378704477666667887544578
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~dE~~y~~~l~~~l~~~G~~~~fvIDTsRNG~gp~~~~~~g~WCN~~GaglG~rPt~~t~~~~vDA~lWIKpPGESDG 320 (364)
T d1oc7a_ 241 PNYDEKHYIEAFRPLLEARGFPAQFIVDQGRSGKQPTGQKEWGHWCNAIGTGFGMRPTANTGHQYVDAFVWVKPGGECNG 320 (364)
T ss_dssp SCCSHHHHHHHHHHHHHHTTCCCEEEEECTTCSSSSCSCSSTTCCSSBSSCCCCSCCBSCCCCTTEEEEECCSCTTBCSC
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
T ss_conf 76259999999999997458887448870467889877778888779999826889978999877677887588847788
Q ss_pred -------------------------------------------C
Q ss_conf -------------------------------------------9
Q 000711 482 -------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------s 482 (1338)
=
T Consensus 321 ~~~~~~~~~D~~C~~~~a~~~aP~AG~Wf~~~f~~Lv~NA~P~f 364 (364)
T d1oc7a_ 321 TSDTTAARYDYHCGLEDALKPAPEAGQWFNEYFIQLLRNANPPF 364 (364)
T ss_dssp CCCTTSTTCCGGGGSTTBCSSCCSTTSBCHHHHHHHHHTCSSCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 88876666676667655789998677752999999997268999
|
| >d1w0pa3 b.68.1.1 (A:217-346,A:544-777) Vibrio cholerae sialidase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Vibrio cholerae sialidase species: Vibrio cholerae [TaxId: 666]
Probab=100.00 E-value=0 Score=27397.78 Aligned_cols=1 Identities=0% Similarity=-0.592 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~ripsl~~~~~~~g~~~a~~~~r~~~~~~~~~~~~~di~~~RS~DgGkTWs~~~~i~~~~~~~~~~~~~~p~~~ 80 (364)
T d1w0pa3 1 VIFRGPDRIPSIVASSVTPGVVTAFAEKRVGGGDPGALSNTNDIITRTSRDGGITWDTELNLTEQINVSDEFDFSDPRPI 80 (364)
T ss_dssp EEECTTCEEEEEEECSSSTTCEEEEEEEEETCSSTTCTTCEEEEEEEEESSSSSSCCCCEESSGGGCTTSCEEEEEEEEE
T ss_pred CCCCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCEEE
T ss_conf 93468973547989807899899999623378998655896459999937897589998883158877786534577699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~d~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~d~g~tw~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 160 (364)
T d1w0pa3 81 YDPSSNTVLVSYARWPTDAAQNGDRIKPWMPNGIFYSVYDVASGNWQAPIVNPGPGHGITLTRQQNISGSQNGRLIYPAI 160 (364)
T ss_dssp EETTTTEEEEEEEEEETTCCSGGGCCCTTSCCEEEEEEEETTTTEECCCEEECCSSCCEECCCCTTSTTCCTTCEEEEEE
T ss_pred EECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEE
T ss_conf 97999969999975178877566455355448579986579998512352146420003505797120351992999788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~s~d~g~tw~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~l~~~~R~~~~~~~~~~~~~~~~~~ 240 (364)
T d1w0pa3 161 VLDRFFLNVMSIYSDDGGSNWQTGSTLPIPFRWKSSSILETLEPSEADMVELQNGDLLLTARLDFNQIVNGVNYSPRQQF 240 (364)
T ss_dssp EESSSCEEEEEEEESSSSSSCEECCCCCCCEEESSSSCEEECEEEEEEEEECTTSCEEEEEEEESCCEETTEECCSEEEE
T ss_pred EECCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCCCCEEEE
T ss_conf 50578885037885168857886455676665334544345788722699965865678998157865577688975999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~gR~~~~l~~S~D~G~TW~~~~~l 320 (364)
T d1w0pa3 241 LSKDGGITWSLLEANNANVFSNISTGTVDASITRFEQSDGSHFLLFTNPQGNPAGTNGRQNLGLWFSFDEGVTWKGPIQL 320 (364)
T ss_dssp EESSSSSSCEEEEEEEGGGSTTCCSSCCCCEEEEEECTTSCEEEEEEEECTTTTTSSSSBSEEEEEESSTTSCCEEEEEC
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEE
T ss_conf 97589842235546753335776788632014776057896389996787876577860125999984799679997497
Q ss_pred -------------------------------------------C
Q ss_conf -------------------------------------------9
Q 000711 482 -------------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------------s 482 (1338)
+
T Consensus 321 ~~g~~~Ys~~~~~~~g~~~~~ye~~~~~i~~~~~~~~~l~~~~~ 364 (364)
T d1w0pa3 321 VNGASAYSDIYQLDSENAIVIVETDNSNMRILRMPITLLKQKLT 364 (364)
T ss_dssp CSSBCCSEEEEECSSSEEEEEEECGGGCEEEEEEEHHHHGGGTC
T ss_pred CCCCCCCCCEEECCCCEEEEEEECCCCCEEEEEEEHHHHHCCCC
T ss_conf 28997787327928998999999499838999987999521059
|
| >d1m7va_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Nitric oxide (NO) synthase oxygenase domain superfamily: Nitric oxide (NO) synthase oxygenase domain family: Nitric oxide (NO) synthase oxygenase domain domain: Nitric oxide (NO) synthase oxygenase domain species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=27327.91 Aligned_cols=1 Identities=100% Similarity=2.265 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
|
T Consensus 1 ~s~~e~l~~eA~~Fi~~~y~e~~~~~~~~~Rl~ev~~eI~~tGtY~~T~eEL~~GAk~AWRNs~RCIGRl~W~~L~V~D~ 80 (363)
T d1m7va_ 1 GSHMEILWNEAKAFIAECYQELGKEEEVKDRLDSIKSEIDRTGSYVHTKEELEHGAKMAWRNSNRCIGRLFWNSLNVIDR 80 (363)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTCTTCSCGGGGGGCEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEC
T ss_conf 97678999999999999998648632489999999999974177438999998878998714552323002275725656
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 R~v~t~~~m~eal~~Hl~~AtN~G~Ir~~ITVF~p~~~~~~~~RIwN~QLirYAGY~~dg~iiGDP~~vefT~~c~~lGW 160 (363)
T d1m7va_ 81 RDVRTKEDVRDALFHHIETATNNGKIRPSITIFPPEEKGEKQVEIWNHQLIRYAGYESDGERIGDPASRSLTAACEQLGW 160 (363)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHGGGSCCCEEEECCCCSSSCCSEEECCSBSSCBCEEC--CCCEECGGGHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEECHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 68999899999999999997079987623898078778999865644888866175889983689526899999997599
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~t~FDvLPlviq~~g~~~P~~feiP~~lvlEV~i~HP~~~~f~~LgLkWyavP~iS~M~L~iGGi~y~aaPFNGWYM 240 (363)
T d1m7va_ 161 RGERTDFDLLPLIFRMRGDEQPVWYELPRSLVIEVPITHPDIEAFSDLELKWYGVPIISDMKLEVGGIHYNAAPFNGWYM 240 (363)
T ss_dssp CCCCCTTCBCCEEEEETTCSSCEEECCCTTTCCEEECCCSSCGGGGGGCCEEESCCEECSCEEEETTEEESCCCEECCEE
T ss_pred CCCCCCCCEEEEEEEECCCCCCEEECCCHHHEEEECCCCCCCHHHHHCCCCEEECHHHCCCHHHCCCEEECCCCCCCCEE
T ss_conf 99899888403899967999981331887783675157989755776698632032332240310888542456343422
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~TEIgaRnl~D~~RYn~L~~VA~~mGlDt~~~~sLWkDrAlvElN~AVLhSF~~~gVtivDHHtas~~F~~f~~~E~~~~ 320 (363)
T d1m7va_ 241 GTEIGARNLADEKRYDKLKKVASVIGISTNYNTDLWKDQALVELNKAVLYSYKKQGVSIVDHHTAASQFKRFEEQEEEAG 320 (363)
T ss_dssp HHHHHTTTTTCTTTTCCHHHHHHHTTCCCSCGGGTHHHHHHHHHHHHHHHHHHHHTCCEECHHHHHHHHHHHHHHHHHTT
T ss_pred EHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHC
T ss_conf 00230244555777774799999948888997215778899999999999999879647052788999999999999818
Q ss_pred ------------------------------------------C
Q ss_conf ------------------------------------------9
Q 000711 482 ------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------s 482 (1338)
-
T Consensus 321 r~~~gdW~WlvPP~S~s~tpvfH~~~~~~~~~Pnf~yq~~pw~ 363 (363)
T d1m7va_ 321 RKLTGDWTWLIPPISPAATHIFHRSYDNSIVKPNYFYQDKPYE 363 (363)
T ss_dssp CCCBCCHHHHSCSSSGGGSGGGGSCCBCCCCSSEEECCCCTTC
T ss_pred CCCCCCCEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 9999984377788864344277776544445887502788899
|
| >d1zaia1 c.1.10.1 (A:1-363) Fructose-1,6-bisphosphate aldolase {Rabbit (Oryctolagus cuniculus), muscle isozyme [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Fructose-1,6-bisphosphate aldolase species: Rabbit (Oryctolagus cuniculus), muscle isozyme [TaxId: 9986]
Probab=100.00 E-value=0 Score=27324.37 Aligned_cols=1 Identities=0% Similarity=-1.158 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~e~~~eL~~~a~~~~~~GKGilAADeS~gT~~Krl~~igventeenr~~yR~~lftsp~f~~~~IsGvILfe 80 (363)
T d1zaia1 1 PHSHPALTPEQKKELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRVNPCIGGVILFH 80 (363)
T ss_dssp CCCCCSSCHHHHHHHHHHHHHHTCTTCEEEEECCCHHHHHHHHHTTTCCCCHHHHHHHHHHHHTCCGGGTTTEEEEEECH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHCCEEEEECCH
T ss_conf 99877689999999999999980589869982689983777898769999778999999987148512205446897648
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 eTl~q~~~~g~~~~~ll~~kGIvPgIKVDkGl~~l~~~~ge~~t~gLd~L~~rl~~y~~~Ga~faKwRsVi~i~~~~ps~ 160 (363)
T d1zaia1 81 ETLYQKADDGRPFPQVIKSKGGVVGIKVDKGVVPLAGTNGETTTQGLDGLSERCAQYKKDGADFAKWRCVLKIGEHTPSA 160 (363)
T ss_dssp HHHTCBCTTSCBHHHHHHHTTCEEEEECCCCEEECTTSSSCEEECCCTTHHHHHHHHHHTTCCEEEEEEEECCSSSCSCH
T ss_pred HHHHHHCCCCCCCCHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCC
T ss_conf 87511225998622566515854467347653336788644135662239999999986686513112102235677740
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~I~~na~~laryA~i~q~~GLVPIVEPEVlidg~h~~e~~~~vt~~vl~~v~~~l~~~~V~leg~lLKpnMv~~g~~~~ 240 (363)
T d1zaia1 161 LAIMENANVLARYASICQQNGIVPIVEPEILPDGDHDLKRCQYVTEKVLAAVYKALSDHHIYLEGTLLKPNMVTPGHACT 240 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSSCCHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEECCCCCCCCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEECCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 24899899999999999865842002353442476315788999999999999876412323467501355666754355
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~va~~Tv~~l~~~vp~~VpgIvfLSGGqS~eeAt~~LnamNk~~~~~pW~lsfSfgRALQ~~~lk~W~g~~~n~ 320 (363)
T d1zaia1 241 QKYSHEEIAMATVTALRRTVPPAVTGVTFLSGGQSEEEASINLNAINKCPLLKPWALTFSYGRALQASALKAWGGKKENL 320 (363)
T ss_dssp SCCCHHHHHHHHHHHHHTTSCTTSCEEEECCTTCCHHHHHHHHHHHHHCSSCCCSEEEEEESHHHHHHHHHHHTTCGGGH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCH
T ss_conf 54886675566555654058977772110578765889999999986036899976999751766489999847882258
Q ss_pred ------------------------------------------C
Q ss_conf ------------------------------------------9
Q 000711 482 ------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------s 482 (1338)
=
T Consensus 321 ~aaQ~~~~~ra~~Ns~A~~G~y~~~~e~~~~~~~~l~v~~~~y 363 (363)
T d1zaia1 321 KAAQEEYVKRALANSLACQGKYTPSGQAGAAASESLFISNHAY 363 (363)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCSSSCCCCCCCCCCSCCGGGC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9999999999985468765850787776754455520067659
|
| >d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27323.59 Aligned_cols=1 Identities=0% Similarity=-1.789 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 WLAEHMlIlgvt~P~g~~~yvaaAFPSaCGKTnlAMl~p~~pGwkv~~vGDDiawi~~~~dG~l~AiNPE~G~FGVapgt 80 (363)
T d1khba1 1 WLAEHMLVLGITNPEGEKKYLAAAFPSACGKTNLAMMNPSLPGWKVECVGDDIAWMKFDAQGHLRAINPENGFFGVAPGT 80 (363)
T ss_dssp CEEESCEEEEEECTTSCEEEEEEECCTTSCHHHHHTCCCCSTTCEEEEEESSCEEEEECTTSBEEEECCCSEEEEECTTC
T ss_pred CHHHHHHHHEECCCCCCEEEEEEECCCCCCCHHHHHHCCCCCCCEEEEECCCEEEEEECCCCCEEEECCCCCCCCCCCCC
T ss_conf 92352343032489997799987567443421088718899996778941746777787889678536655753447898
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~tnp~am~~l~~~~IFTNValt~DG~vwWeG~~~~~~~~~~~~~w~g~~~~~~~~~paaHpNsRFt~p~~qcp~id~~ 160 (363)
T d1khba1 81 SVKTNPNAIKTIQKNTIFTNVAETSDGGVYWEGIDEPLASGVTITSWKNKEWSSEDGEPCAHPNSRFCTPASQCPIIDAA 160 (363)
T ss_dssp CTTTCHHHHHHTTBSCEEESCEEETTSCEECTTCCCCCCTTCCEECTTSSEECTTSSSCSSCTTCEEEEEGGGCTTBCTT
T ss_pred CCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC
T ss_conf 98889999997536852443567789974678898889877524678899888888997778875202137669866843
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 wedP~GVpIsaiiFGGRr~~t~PlV~ea~~W~hGV~~GAtm~SE~TAAa~g~~g~vrrdPmAMlpF~gyn~gdY~~hWL~ 240 (363)
T d1khba1 161 WESPEGVPIEGIIFGGRRPAGVPLVYEALSWQHGVFVGAAMRSEATAAAEHKGKIIMHDPFAMRPFFGYNFGKYLAHWLS 240 (363)
T ss_dssp TTCTTCEEEEEEEEECCCSSSCCSEEECSSHHHHHHHHHTCEEEC--------CCEEECGGGCTTTCSSCHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCEEEEEEEECHHHHHHHHCCCCCEECCCHHHHHHCCCCHHHHHHHHHH
T ss_conf 35987514778997565688887248731466607873210104567764146864318066543328898999999876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~g~~~~~k~PkIF~VNWFrKd~~GkFLWPGfGeN~RVLkWI~~Rv~G~~~A~eTPIG~vP~~~dLd~~GL~~~~~~el~~ 320 (363)
T d1khba1 241 MAQHPAAKLPKIFHVNWFRKDKEGKFLWPGFGENSRVLEWMFNRIDGKASTKLTPIGYIPKEDALNLKGLGHINMMELFS 320 (363)
T ss_dssp GGGSTTCBCCEEEEECSCCBCTTSCBSSCCGGGGHHHHHHHHHHHTC--CEEEETTEEEECTTCSCCTTCCCCCHHHHTC
T ss_pred HHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHC
T ss_conf 51246567984799976534588886578863156999999998649755201676312683446866788666999838
Q ss_pred ------------------------------------------C
Q ss_conf ------------------------------------------9
Q 000711 482 ------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------s 482 (1338)
-
T Consensus 321 vd~~~w~~E~~~i~~~f~~~~g~~LP~el~~eL~~Lk~RL~~m 363 (363)
T d1khba1 321 ISKEFWDKEVEDIEKYLVDQVNADLPCEIEREILALKQRISQM 363 (363)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 7999999999999999998733305099999999999999649
|
| >d1zq1a2 c.88.1.1 (A:76-438) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Glutaminase/Asparaginase superfamily: Glutaminase/Asparaginase family: Glutaminase/Asparaginase domain: Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD species: Pyrococcus abyssi [TaxId: 29292]
Probab=100.00 E-value=0 Score=27321.14 Aligned_cols=1 Identities=0% Similarity=-0.426 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~~~~lPkI~ii~TGGTIa~~~~~~~~~~~p~~~~~~l~~~~p~~~~~~~~~~~~~~~~dS~~~~~~~~~ 80 (363)
T d1zq1a2 1 KPEVHFEALIEGKPGLPEVTIIGTGGTIASRIDYETGAVYPAFTAEELAKALPEIFEVANVKPKLLFNIFSEDMKPKHWV 80 (363)
T ss_dssp CCCCCCCSSCCCCTTCCEEEEEECSCCCCEEEETTTTEEEECCCHHHHHHHCGGGGGTSEEEEEECCCCCGGGCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCHHHHHCCEEEEEEECCCCCHHCCHHHHH
T ss_conf 98644345688999999799997787314046687783378799999998575455125267999633896247999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~l~~~i~~~~~~~d~G~VvtHGTDTl~eTA~~L~~~l~~~~kPVVlTGa~~P~~~~~sDg~~NL~~Al~~A~~~~~~v~v 160 (363)
T d1zq1a2 81 KIAHEVAKALNSGDYGVVVAHGTDTMGYTAAALSFMLRNLGKPVVLVGAQRSSDRPSSDAAMNLICSVRMATSEVAEVMV 160 (363)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCSSSHHHHHHHHHHHEESCCSCEEEECCSSCTTSTTCSHHHHHHHHHHHHTSSBCSEEE
T ss_pred HHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEE
T ss_conf 99999998632777737983587739999999999724899638996334135677751077899999998565666326
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~i~~a~~v~K~~t~~~~aF~sp~~~pLg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~il~~~pG 240 (363)
T d1zq1a2 161 VMHGETGDTYCLAHRGTKVRKMHTSRRDAFRSINDVPIAKIWPNGEIEFLRKDYRKRSDEEVEVDDKIEEKVALVKVYPG 240 (363)
T ss_dssp EEESSSSSSCEEEEETTSEEECBSSCSTTEEECSSCCSEEECTTSCEEESCSCCCBCCCCCCEECCCCCCCEEEEECCTT
T ss_pred EEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 75200143145532131012345655444468776744899738879862454468887534554245785799993699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~l~~~~~~g~~GiVl~g~G~Gnvp~~~~~~l~~a~~~gi~VV~~Sqc~~G~v~~~~Y~~g~~l~~~GvI~~gdlt~ 320 (363)
T d1zq1a2 241 ISSEIIDFLVDKGYKGIVIEGTGLGHTPNDIIPSIERAVEEGVAVCMTSQCIYGRVNLNVYSTGRKLLKAGVIPCEDMLP 320 (363)
T ss_dssp CCTHHHHHHHHTTCSEEEEEEBTTTBCCGGGHHHHHHHHHTTCEEEEEESSSBSCCCCSSSHHHHHHHHTTCEECTTCCH
T ss_pred CCHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHCCEEECCCCCH
T ss_conf 99999999985798369998555888856788999999747926999368787885777654437788699898899899
Q ss_pred ------------------------------------------C
Q ss_conf ------------------------------------------9
Q 000711 482 ------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------s 482 (1338)
-
T Consensus 321 ekArikLm~lL~~~~~~~eI~~~f~~nl~GE~t~~~~~~~~~~ 363 (363)
T d1zq1a2 321 ETAYVKLMWVLGHTQNLEEVRKMMLTNYAGEITPYTRFDTYLR 363 (363)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHSCSSTTSCSSCBTTCSCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 9999999999859999999999971366853688766666569
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=0 Score=27320.19 Aligned_cols=1 Identities=0% Similarity=-0.227 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (363)
T d2c5aa1 1 TYKELEREQYWPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGV 80 (363)
T ss_dssp CCTTCCCCCSCTTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTC
T ss_pred CHHHCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCCEEEEECHHHHHHHHHHHCC
T ss_conf 92231356737878987999788878999999999978298999968985211342356727993515589899876148
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 d~Vih~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~~i~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p~~ 160 (363)
T d2c5aa1 81 DHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQD 160 (363)
T ss_dssp SEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSS
T ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 76731023322222222222222222221246777767751752202446654235554456554554346677689888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~Yg~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D~~ 240 (363)
T d2c5aa1 161 AFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECV 240 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHH
T ss_conf 78999999999999999984997899982157616876432222221100000113345543438998578874002778
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~ni~~~~~~s~~~l~~~i~~~~g~~~~i~~~~~~~~~~~~~~d~ska~~~LGw~p~~sleegi~~t 320 (363)
T d2c5aa1 241 EGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEGLRIT 320 (363)
T ss_dssp HHHHHHHHSSCCSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECCCCCCSBCEECCHHHHHHHSCCCCCCHHHHHHHH
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 99999985788882797168765389999999998689875476899998641455889999986999788999999999
Q ss_pred ------------------------------------------C
Q ss_conf ------------------------------------------9
Q 000711 482 ------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------s 482 (1338)
.
T Consensus 321 i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (363)
T d2c5aa1 321 YFWIKEQIEKEKAKGSDVSLYGSSKVVGTQAPVQLGSLRAADG 363 (363)
T ss_dssp HHHHHHHHHHHHHHTCCGGGGGSCCCCCCCCCCCTTCCCCSCC
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCC
T ss_conf 9999998876541454432145331110105312476233789
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=100.00 E-value=0 Score=27319.06 Aligned_cols=1 Identities=0% Similarity=-0.526 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~e~LF~P~~ig~~~lkNRiv~apm~~~~a~~~g~~~~~~~~~yy~~ra~~Glii~e~~~V~~~~~~~~~~~~l~~d~~i~ 80 (363)
T d1vyra_ 1 AEKLFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRASAGLIISEATQISAQAKGYAGAPGLHSPEQIA 80 (363)
T ss_dssp CCSTTSCEEETTEEESSSEEECCCCCCCCBTTTTBCCHHHHHHHHHTTTSSEEEEEEEESSSTTCCSTTCCBSSSHHHHH
T ss_pred CCCCCCCCCCCCEEECCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHCC
T ss_conf 95047983689989788738763468767798998989999999997086979981268885335799987437735503
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~k~l~~~vh~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~ 160 (363)
T d1vyra_ 81 AWKKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVN 160 (363)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCTTSSCGGGSGGGCCCEESSSCCCCSEEEEECTTSCEEEEECCCCEECCGGGHHHHHH
T ss_pred CCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 20033445652697046644126765454436787630101223555555344766664557877764566777999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~f~~AA~rA~~aGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~~g~d~i~~r~s~~~~~~ 240 (363)
T d1vyra_ 161 DFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQ 240 (363)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBT
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCC
T ss_conf 99999999997513403451467103111446766566654464033444767888765553047887412311323311
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~gg~~~~e~~~~~~~l~~~gvd~i~vs~~~~~~~~~~~~~~~~~~~~~~~~~vi~~G~~t~~~ae~~l~~G~~DlV~ 320 (363)
T d1vyra_ 241 NVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVA 320 (363)
T ss_dssp TBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEE
T ss_pred CHHHCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCCCCEEH
T ss_conf 10001330688999999877429806620347766786532888999898658539966899999999999879965115
Q ss_pred ------------------------------------------C
Q ss_conf ------------------------------------------9
Q 000711 482 ------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------s 482 (1338)
-
T Consensus 321 ~gR~liadP~~~~K~~~g~~~~~~~~~~~~~~~~~~y~~y~~~ 363 (363)
T d1vyra_ 321 FGRDYIANPDLVARLQKKAELNPQRPESFYGGGAEGYTDYPSL 363 (363)
T ss_dssp ESHHHHHCTTHHHHHHHTCCCCCCCGGGSSSSSSTTTTCSCCC
T ss_pred HHHHHHHCCCHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCC
T ss_conf 5499987921999998389999998754237999985789898
|
| >d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Isocitrate/Isopropylmalate dehydrogenase-like superfamily: Isocitrate/Isopropylmalate dehydrogenase-like family: Dimeric isocitrate & isopropylmalate dehydrogenases domain: 3-isopropylmalate dehydrogenase, IPMDH species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=27318.96 Aligned_cols=1 Identities=0% Similarity=-1.490 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 M~~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~t~e~i~~~dail~Gaig~P~ 80 (363)
T d1cnza_ 1 MSKNYHIAVLPGDGIGPEVMAQALKVMDAVRSRFDMRITTSHYDVGGIAIDNHGHPLPKATVEGCEQADAILFGSVGGPK 80 (363)
T ss_dssp CCCCEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGG
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEECHHHHHHHHCCCCCHHHHHHHHHCCCEEEECCCCCC
T ss_conf 99986699989888559999999999999866619706999996428799974996889999999850413772257878
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~g~~~~~~~~~~~~~~~iD~vivREnteg~Y~g~~~~~~~~~~~~~ 160 (363)
T d1cnza_ 81 WENLPPESQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEK 160 (363)
T ss_dssp GTTSCGGGSTTHHHHHHHHHHHTCCEEEEEEECCTTCGGGCSBCHHHHHHCCEEEEEEECSSGGGTCSSCEEECCGGGCE
T ss_pred CCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEECCCCCCEE
T ss_conf 65543456644006799999738825777776125655323576554679842899874135433576531316885203
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~t~~~~~ri~r~Af~~A~~r~~kVt~v~KaNv~k~~~lf~~~~~eva~~yp~I~~~~~~vD~~~~~lv~~P~~f 240 (363)
T d1cnza_ 161 AFDTEVYHRFEIERIARIAFESARKRRRKVTSIDKANVLQSSILWREIVNDVAKTYPDVELAHMYIDNATMQLIKDPSQF 240 (363)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCHHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGC
T ss_pred ECCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHCCCCC
T ss_conf 32237764899999999999999966995689813753304487899999986228874975176658999986455777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 dViv~~Nl~GDIlSDl~a~l~GglG~~~s~ni~~~~~a~fEp~HGsapdiaGk~~aNP~a~Ils~ammL~~~lg~~~~A~ 320 (363)
T d1cnza_ 241 DVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPIAQILSLALLLRYSLDANDAAT 320 (363)
T ss_dssp SEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECTTSCEEEEESSCCCGGGTTTTCSCCHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CEEEEHHHHHHHHHHHHHHHHCCCCCCHHEEEECCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 66642357777678899887504542111034036407851677765334798864909999999999984189879999
Q ss_pred ------------------------------------------C
Q ss_conf ------------------------------------------9
Q 000711 482 ------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------s 482 (1338)
.
T Consensus 321 ~i~~Av~~~l~~g~~T~Dl~~~~~~~~T~e~~dai~~~l~~~~ 363 (363)
T d1cnza_ 321 AIEQAINRALEEGVRTGDLARGAAAVSTDEMGDIIARYVAEGV 363 (363)
T ss_dssp HHHHHHHHHHHTTCCCGGGTTTTTCCCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 9999999999769967564689974899999999999987019
|
| >d1onha_ e.3.1.1 (A:) AMPC beta-Lactamase, class C {Enterobacter cloacae, P99, cephalosporinase [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta-lactamase/transpeptidase-like superfamily: beta-lactamase/transpeptidase-like family: beta-Lactamase/D-ala carboxypeptidase domain: AMPC beta-Lactamase, class C species: Enterobacter cloacae, P99, cephalosporinase [TaxId: 550]
Probab=100.00 E-value=0 Score=27318.34 Aligned_cols=1 Identities=0% Similarity=-0.460 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 p~~~~~l~~~v~~~i~~~~~~~~~pG~~v~V~~~g~~~~~~~G~~~~~~~~p~~~dT~f~iaSitK~~ta~~i~~L~e~G 80 (363)
T d1onha_ 1 PVSEKQLAEVVANTVTPLMKAQSVPGMAVAVIYQGKPHYYTFGKADIAANKPVTPQTLFELGSISKTFTGVLGGDAIARG 80 (363)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTCSEEEEEEEETTEEEEEEEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEEECCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCC
T ss_conf 98979999999999999998389986999999999999995876006779889999978720559999999999998669
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~l~lddpv~~ylp~~~~~~~~~ITi~~LL~HtSGl~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~~~Ysn~~~~llg~i 160 (363)
T d1onha_ 81 EISLDDPVTRYWPQLTGKQWQGIRMLDLATYTAGGLPLQVPDEVTDNASLLRFYQNWQPQWKPGTTRLYANASIGLFGAL 160 (363)
T ss_dssp SCCTTSBGGGTCTTCCCGGGTTCBHHHHHHTCSSCCCSSCCTTCCSHHHHHHHHHHCCCSSCTTSEECCCHHHHHHHHHH
T ss_pred CCEEEECCCHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCEEHHHHH
T ss_conf 62242021011100244434555065676530467544586455788999999987554148740231256410013555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ie~~tg~~~~~~~~e~i~~PLgm~~t~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~aggl~st~~Dla~~~~~~l 240 (363)
T d1onha_ 161 AVKPSGMPYEQAMTTRVLKPLKLDHTWINVPKAEEAHYAWGYRDGKAVRAVRVSPGMLDAQAYGVKTNVQDMANWVMANM 240 (363)
T ss_dssp HTGGGTSCHHHHHHHHTTTTTTCTTEESSCCGGGGGGBCCEEETTEEECCCCCCSSTTHHHHHCCEECHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCEEECHHHHHHHHHHHH
T ss_conf 56404997004457888861696421446870014652136665974541011024445656614417999999999860
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~G~ 320 (363)
T d1onha_ 241 APENVADASLKQGIALAQSRYWRIGSMYQGLGWEMLNWPVEANTVVEGSDSKVALAPLPVAEVNPPAPPVKASWVHKTGS 320 (363)
T ss_dssp CGGGCCSHHHHHHHHHHTSEEEEETTEEECSSCEEEESSCCHHHHHHHHSHHHHTSCEECEEEEEEECCCSSEEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHCEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
T ss_conf 68877716788888775321045787566655020366655554445777542113444445677777778747972365
Q ss_pred ------------------------------------------C
Q ss_conf ------------------------------------------9
Q 000711 482 ------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------s 482 (1338)
-
T Consensus 321 ~~G~~s~~~~~P~~~~~ivvl~N~~~~~~~~~~~a~~i~~al~ 363 (363)
T d1onha_ 321 TGGFGSYVAFIPEKQIGIVMLANTSYPNPARVEAAYHILEALQ 363 (363)
T ss_dssp CSSCEEEEEEEGGGTEEEEEEESBCCCHHHHHHHHHHHHHHTC
T ss_pred CCCCEEEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 7875299999977997999997489998899999999999639
|
| >d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Hypothetical protein YteR domain: Hypothetical protein YteR species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=27317.76 Aligned_cols=1 Identities=0% Similarity=-0.327 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~W~W~~G~~~~gl~~lye~Tgd~~y~~~a~~~~~~~~~~~g~~~~~~~~~d~~ 80 (363)
T d1nc5a_ 1 KSPLTYAEALANTIMNTYTVEELPPANRWHYHQGVFLCGVLRLWEATGEKRYFEYAKAYADLLIDDNGNLLFRRDELDAI 80 (363)
T ss_dssp CCHHHHHHHHHHHHHHHCCTTTSSSTTCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHBCTTCCBCCCTTCGGGT
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
T ss_conf 97579999999999973665348999982775649999999999883999999999999999844478745778987415
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~l~~ly~~Tgd~~y~~~a~~~~~~l~~~~~~~~g~~~~~~~~~~~~wiD~l~M~~p~l~~~~~~tgd~~y~d~a~~ 160 (363)
T d1nc5a_ 81 QAGLILFPLYEQTKDERYVKAAKRLRSLYGTLNRTSEGGFWHKDGYPYQMWLDGLYMGGPFALKYANLKQETELFDQVVL 160 (363)
T ss_dssp GGGGGHHHHHHHHCCHHHHHHHHHHHGGGGTSCBCTTSCBCSCTTSTTEEETHHHHHHHHHHHHHHHHHTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCEEEEECCCCHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 88999999998728688999999999862137878878631367887773642067748999999998698789999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~l~d~~~gL~~h~~~~~~~~~~~~~~~~~~~~~WsRGngW~~~gl~~~l~~lp~~~~~~~~~~~~~~~~~~~~ 240 (363)
T d1nc5a_ 161 QESLMRKHTKDAKTGLFYHAWDEAKKMPWANEETGCSPEFWARSIGWYVMSLADMIEELPKKHPNRHVWKNTLQDMIKSI 240 (363)
T ss_dssp HHHHHHHHHBCTTTSCBCSEEETTCCSTTSCTTTCBCSCCBHHHHHHHHHHHHHHGGGSCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999997515889986525455676677788888786501100019999879999867777800999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~q~~d~G~w~~~~d~p~~~~~~~etSata~~~y~l~~g~~~g~l~~~y~~~~~ka~~~l~~~~~~~~~~g~~~v~~~~ 320 (363)
T d1nc5a_ 241 CRYQDKETGLWYQIVDKGDRSDNWLESSGSCLYMYAIAKGINKGYLDRAYETTLLKAYQGLIQHKTETSEDGAFLVKDIC 320 (363)
T ss_dssp HTTSCTTTSCCBSBTTCTTSTTCCBCHHHHHHHHHHHHHHHHHTSSCGGGHHHHHHHHHHHHHHHEEECTTSCEEECCEE
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 84558878662310567777898633589999999999998758444999999999999999987403899874650357
Q ss_pred ------------------------------------------C
Q ss_conf ------------------------------------------9
Q 000711 482 ------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------s 482 (1338)
-
T Consensus 321 ~g~~~~~~~~y~~~~~~~~~~~G~g~fllA~~e~~~l~~~~~~ 363 (363)
T d1nc5a_ 321 VGTSAGFYDYYVSRERSTNDLHGAGAFILAMTELEPLFRSAGK 363 (363)
T ss_dssp CSCCSCCHHHHHTSCEESSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 7899998200126787578757799999999999999984289
|
| >d1kwfa_ a.102.1.2 (A:) CelA cellulase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Cellulases catalytic domain domain: CelA cellulase species: Clostridium thermocellum [TaxId: 1515]
Probab=100.00 E-value=0 Score=27315.64 Aligned_cols=1 Identities=0% Similarity=-0.526 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~p~~~~~~~~~~~~~~~qa~~~~~~~~~w~~~k~~~~~~~~~~~~~rv~d~~~~~~~t~SEGQgYGMl~Av~~~d~~~ 80 (363)
T d1kwfa_ 1 AGVPFNTKYPYGPTSIADNQSEVTAMLKAEWEDWKSKRITSNGAGGYKRVQRDASTNYDTVSQGMGYGLLLAVCFNEQAL 80 (363)
T ss_dssp CCSSCCCCCSSSCSCSSSCHHHHHHHHHHHHHHHHHHHEECTTSTTSCEECCCGGGTTCEEHHHHHHHHHHHHHTTCHHH
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHH
T ss_conf 99887788888766778757899999999999999998066798872488717988987312789999999998499999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 Fd~l~~wt~~~l~~~~L~aW~~~~~~~~~~~~~d~n~AtDgDl~iA~ALl~A~~~Wg~~~~~~Y~~~A~~ii~~i~~~~v 160 (363)
T d1kwfa_ 81 FDDLYRYVKSHFNGNGLMHWHIDANNNVTSHDGGDGAATDADEDIALALIFADKLWGSSGAINYGQEARTLINNLYNHCV 160 (363)
T ss_dssp HHHHHHHHHTTBCTTSSBCSEECTTSCBCTTTTTTSCBHHHHHHHHHHHHHHHHHHCSSSSSCHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999974566888536778999877677888989768999999999999774874088999999999999998510
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~l~pg~~~~~~~~~npSY~~p~~~~~fa~~~~~~~W~~v~~~s~~ll~~~~~~~~~tGL~pDw~~~~~~p~~~~~ 240 (363)
T d1kwfa_ 161 EHGSYVLKPGDRWGGSSVTNPSYFAPAWYKVYAQYTGDTRWNQVADKCYQIVEEVKKYNNGTGLVPDWCTASGTPASGQS 240 (363)
T ss_dssp CTTTCCBCSBSSSCBTTBBCGGGCCHHHHHHHHHHHCCTHHHHHHHHHHHHHHHHTTTSTTSCCCCSSBCTTSSCCTTSC
T ss_pred CCCCCEECCCCCCCCCCEECHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 78984553676568988558032359999999963687338999999999999976405888888400046888588898
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~ydA~Rvp~~ia~d~~~~g~~~~~~~~~~~~~f~~~~~~~~~~~~y~~~G~~~~~~~~~~f~A~~~~~~~~~~~~~~ 320 (363)
T d1kwfa_ 241 YDYKYDATRYGWRTAVDYSWFGDQRAKANCDMLTKFFARDGAKGIVDGYTIQGSKISNNHNASFIGPVAAASMTGYDLNF 320 (363)
T ss_dssp CSBSTTGGGHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCGGGCCSCBCTTSCBCCCCCCTTTHHHHHHHHTTSSCHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHH
T ss_conf 87565599999999998750157145899999999998459888750481698446888979899999999873588589
Q ss_pred ------------------------------------------C
Q ss_conf ------------------------------------------9
Q 000711 482 ------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~~~~~~~~~~~~~YY~~~L~Ll~ll~~sG~~~~p~~~~ 363 (363)
T d1kwfa_ 321 AKELYRETVAVKDSEYYGYYGNSLRLLTLLYITGNFPNPLSDL 363 (363)
T ss_dssp HHHHHHHHHHCCCCGGGTTHHHHHHHHHHHHHTTCCCCTTSCC
T ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 9999987522467777887899999999999749989887679
|
| >d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid aminotransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes family: D-aminoacid aminotransferase-like PLP-dependent enzymes domain: Branched-chain aminoacid aminotransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=100.00 E-value=0 Score=27315.42 Aligned_cols=1 Identities=0% Similarity=-0.194 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~d~m~~~~~~~~~W~ng~ivp~~~~~isp~~~~l~YG~gvFEgiR~y~ 80 (363)
T d2a1ha1 1 SSFKAADLQLEMTQKPHKKPGPGEPLVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFK 80 (363)
T ss_dssp CCCCGGGCEECCCSSCCCCCCTTSCCCTTCSCCSEEEEEEEETTEECCCEEEESCCEEECTTBHHHHSCCEEECCEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEECCEEEECCCCEECCCHHHCCCCCEEEEEEEEEE
T ss_conf 97542115999767998898972237777755651799992288300887868412610720111304424353689998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~g~i~lFrld~Hl~RL~~Sa~~l~~~~~~~~~~~~~i~~~v~~n~~~v~~~~~~~~yiR~~v~~~~~~~~~~~~~~~~ 160 (363)
T d2a1ha1 81 GKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQPRRAL 160 (363)
T ss_dssp CTTSCEEEESHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCCSTTCEEEEEEEEEECCBCCSCSCCSEEE
T ss_pred CCCCCEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCC
T ss_conf 79997899735788777888889757999876899999999998777526654465379997622677644566776662
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~k~~~ny~~~~la~~eA~~~G~de~l~L~~~dg~v~E~~~sN 240 (363)
T d2a1ha1 161 LFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGTMN 240 (363)
T ss_dssp EEEEEEEECCSSSSSSCCCEEEEECTTCCSCCTTSSTTSCBGGGTTTHHHHHHHHHHTTCSEEEEEETTTTEEEEETTEE
T ss_pred EEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCEEEECCCEE
T ss_conf 14897603456750013644689751011467545534214556422226888761489501100013451489616607
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 iF~v~~~kdG~~~l~tppl~~~ILpGITR~~Viela~~~g~i~V~Er~i~~~eL~~A~~~~~~dEvF~tgTa~~I~PV~~ 320 (363)
T d2a1ha1 241 IFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHR 320 (363)
T ss_dssp EEEEEECTTSCEEEEECCCSSSSCCCHHHHHHHHHHHHHTSSEEEECCCBHHHHHHHHHTTCEEEEEEEETTTEEEEEEE
T ss_pred EEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHCCCCCEEEECCCCCEEEEEEE
T ss_conf 99998358885799723654334674489999999997399820664779999996765599618998478858999999
Q ss_pred ------------------------------------------C
Q ss_conf ------------------------------------------9
Q 000711 482 ------------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------------s 482 (1338)
.
T Consensus 321 I~~~~~~~~i~~g~~g~~it~~L~~~l~~iq~G~~~~~W~~~v 363 (363)
T d2a1ha1 321 ILYKDRNLHIPTMENGPELILRFQKELKEIQYGIRAHEWMFPV 363 (363)
T ss_dssp EEETTEEEECTTGGGTTHHHHHHHHHHHHHHTTSSCCTTEEEC
T ss_pred EEECCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEC
T ss_conf 9867964893899808899999999999976788899973579
|
| >d1umga_ d.280.1.1 (A:) ST0318 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Sulfolobus fructose-1,6-bisphosphatase-like superfamily: Sulfolobus fructose-1,6-bisphosphatase-like family: Sulfolobus fructose-1,6-bisphosphatase-like domain: ST0318 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=100.00 E-value=0 Score=27252.51 Aligned_cols=1 Identities=0% Similarity=-0.327 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 k~TvSvIKADVGg~~GHt~~hp~ll~~a~~~l~~a~~~glliD~~v~~~GDDi~limTH~~G~d~~eiH~lAW~aF~~~t 80 (362)
T d1umga_ 1 KTTISVIKADIGSLAGHHIVHPDTMAAANKVLASAKEQGIILDYYITHVGDDLQLIMTHTRGELDTKVHETAWNAFKEAA 80 (362)
T ss_dssp CEEEEEEEECCCBBTTTTBCCHHHHHHHHHHHHHHHHTTSCSEEEEEEETTEEEEEEEESSCTTCHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 94699997236787777768989999999999861138868877667643742578754689894899999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~vAK~l~LYGAGQDLL~DaFSGNvkGmGPgvAEmEf~ERpsEp~~vF~aDKTePGAfNlPlY~~FaDPfnt~GLvidp~m 160 (362)
T d1umga_ 81 KVAKDLGLYAAGQDLLSDSFSGNVRGLGPGVAEMEIEERASEPIAIFMADKTEPGAYNLPLYKMFADPFNTPGLVIDPTM 160 (362)
T ss_dssp HHHHHTTCBTTTTTTCTTSSSSSCCCCCCEEEEEEECCCSSCEEEEEEEESBCGGGGHHHHHHHHHCTTTCTHHHHCGGG
T ss_pred HHHHHHCCCCCCCHHHCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCEECCCC
T ss_conf 99887256556621211346765257787437887225789857999853888760120689984284578750317101
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 h~Gf~FeV~Dv~~~k~i~l~~Pee~Ydllalig~~~RyvI~~V~~k~~~eiaav~St~RL~~iAG~YvGKDDPV~iVR~Q 240 (362)
T d1umga_ 161 HGGFKFEVLDVYQGEAVMLSAPQEIYDLLALIGTPARYVIRRVYRNEDNLLAAVVSIERLNLIAGKYVGKDDPVMIVRLQ 240 (362)
T ss_dssp TTCEEEEEEETTTTEEEEEETTTTHHHHHHHHTSTTTEEEEEEEETTTCCEEEEECCCCCBCC---CBCCCSCEEEEECS
T ss_pred CCCEEEEEEEECCCEEEEECCCHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEHHHHHHHHCEECCCCCCEEEEEEC
T ss_conf 36705899970257178851806877899983898735899998668997789976678776406120688866999846
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~gfPA~gEvlepFa~phlVaGwmRGSH~gPlMPV~~~da~~trFdgpPrV~alGFql~~GkL~GP~DlFddpafD~~R~~ 320 (362)
T d1umga_ 241 HGLPALGEALEAFAFPHLVPGWMRGSHYGPLMPVSQRDAKATRFDGPPRLLGLGFNVKNGRLVGPTDLFDDPAFDETRRL 320 (362)
T ss_dssp SSSCCHHHHHHTTSSCCEEEETGGGCEEEECEEECSTTCSCCGGGCSCEEEEEEEEEETTEEEEEEESSCSGGGHHHHHH
T ss_pred CCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCEECCCCCCCCCCCHHHHHHH
T ss_conf 88996465542244652114434566678743201456887567899768888888627887376324577430689999
Q ss_pred -----------------------------------------C
Q ss_conf -----------------------------------------9
Q 000711 482 -----------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------s 482 (1338)
-
T Consensus 321 a~~~A~~mR~~Gpf~PhrLp~~emEYttlp~vl~kL~~rf~~ 362 (362)
T d1umga_ 321 ANIVADYMRRHGPFMPHRLEPTEMEYTTLPLILEKLKDRFKK 362 (362)
T ss_dssp HHHHHHHHHTTTTCTTTBCCGGGCSSCCHHHHHHHTTTTCCC
T ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHCC
T ss_conf 999999998549987655897880211388999999887519
|
| >d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Release factor superfamily: Release factor family: Release factor domain: Polypeptide chain release factor 2 (RF2) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=27250.56 Aligned_cols=1 Identities=0% Similarity=-2.188 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~l~~~i~eL~~rl~~Lr~~fDld~kk~Rl~ELE~~lsdP~fW~D~~kAqkl~KE~s~L~~iVe~~~~l~~~leDl~eL 80 (362)
T d1gqea_ 1 INPVNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGL 80 (362)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 91689999999999999997769798999999999986397144499999999999999999999999999999988877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~Ela~ee~deel~~e~~~~l~~l~~~l~~le~~ll~~~~~D~~nailEIrAGaGG~EA~dfA~~L~RMY~r~ae~~gwk~ 160 (362)
T d1gqea_ 81 LELAVEADDEETFNEAVAELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKT 160 (362)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHHHGGGGGCCSTTTTSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 87764110588888899999998622467787521367545454379998257606688999999999999999759858
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 eiid~~~~e~gG~K~v~~~I~G~~ayg~Lk~EsGvHRvqRvp~~es~gr~hTS~a~V~v~P~~~~~~~~~i~~~dl~i~~ 240 (362)
T d1gqea_ 161 EIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDV 240 (362)
T ss_dssp EEEEEEECSSSSEEEEEEEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEECCBTTBCCCCCGGGEEEEE
T ss_pred EEECCCCCCCCCEEEEEEEEECCCHHHHHHHHCCCEEEEEECCCCCCCEEEEEEEEEEEEECCCCCCCEECCHHHEEEEE
T ss_conf 99414567766546999999776688999872375048884046777347998778899624787631111767827997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~rs~g~GGQ~vN~t~savri~H~ptgi~v~~q~ersq~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~i 320 (362)
T d1gqea_ 241 YRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDNKSDIGWGSQI 320 (362)
T ss_dssp ECCCCSSCCSTTSSCCEEEEEETTTCCEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTCCCCCSCSEE
T ss_pred EECCCCCCCCHHHHHCEEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 52699886512033141688744733677764221014789999999999999999999999999887423127576984
Q ss_pred -----------------------------------------C
Q ss_conf -----------------------------------------9
Q 000711 482 -----------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------s 482 (1338)
-
T Consensus 321 RtY~~~~~rv~DhR~~~~~~~~~~vl~G~ld~~i~a~l~~~~ 362 (362)
T d1gqea_ 321 RSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKAGL 362 (362)
T ss_dssp EEEEGGGTEEEETTTCCEESCHHHHHTTCCHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCCCCCCCEECCHHHHHCCCHHHHHHHHHHCCC
T ss_conf 676589981500053972578468758877999999987779
|
| >d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=27247.84 Aligned_cols=1 Identities=0% Similarity=-1.158 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~r~l~~~g~~~~~~~~~ls~e~l~~~yr~M~~~R~~ee~~~~l~~~g~~~~~~~~~GqEA~~vg~~~al~ 80 (362)
T d1umda_ 1 HRFETFTEEPIRLIGEEGEWLGDFPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIR 80 (362)
T ss_dssp CCCCSSCSSCBCCBCTTSCBCCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSC
T ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHCC
T ss_conf 99877886764777899989987899979999999999999999999999999977996022278978999999999758
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~D~~~~~yR~h~~~la~G~~~~~~~ae~~gk~~g~~~Grggs~H~~~~~~~~~~~~~ivg~~~p~a~G~A~a~k~~~~ 160 (362)
T d1umda_ 81 PGFDWVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLRT 160 (362)
T ss_dssp TTTSEEECCTTTHHHHHHHTCCHHHHHHHHHTBTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHHTTC
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 78786873134189999987439999999845568986543542124212367444444223230077777876530344
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifv~eNN~~aist~~~~~~~~~~~~~~a~~~gi~~~~vDGnDv~~v~~ 240 (362)
T d1umda_ 161 GQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYY 240 (362)
T ss_dssp CCCEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEEETTCHHHHHH
T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHEEEEEEECCCHHHHHHH
T ss_conf 42356522688656773499997764336870366520366644321011145344422232100026744505889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 a~~~Ai~~~R~g~gP~lIE~~tyR~~gHs~~Dd~~~YR~~~Ei~~w~~~DPi~~~~~~L~~~g~~se~e~~~i~~ei~~~ 320 (362)
T d1umda_ 241 VVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWRKKDPIPRFRRFLEARGLWNEEWEEDVREEIRAE 320 (362)
T ss_dssp HHHHHHHHHHTTCCCEEEEEECCCCSCSSTTCCGGGTSCHHHHHHHHTTCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999985689789971334335787655202220014667773299899999999987999999999999999999
Q ss_pred -----------------------------------------C
Q ss_conf -----------------------------------------9
Q 000711 482 -----------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------s 482 (1338)
-
T Consensus 321 V~~a~~~A~~~p~P~~~~l~~~VY~~~~~~l~~q~~~~~~~~ 362 (362)
T d1umda_ 321 LERGLKEAEEAGPVPPEWMFEDVFAEKPWHLLRQEALLKEEL 362 (362)
T ss_dssp HHHHHHHHHHTCBCCGGGGGTTSSSSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHC
T ss_conf 999999998679989899971315799963999999999559
|
| >d2pl5a1 c.69.1.40 (A:5-366) Homoserine O-acetyltransferase {Leptospira interrogans [TaxId: 173]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Leptospira interrogans [TaxId: 173]
Probab=100.00 E-value=0 Score=27246.18 Aligned_cols=1 Identities=100% Similarity=2.497 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
|
T Consensus 1 ~~~~~~~~~~~~~~~f~le~G~~l~~~~l~Y~t~G~ln~~~~NaVlv~h~~tG~~~~~g~~~~~~~~~gww~~liG~g~~ 80 (362)
T d2pl5a1 1 GSIGIIETKYAEFKELILNNGSVLSPVVIAYETYGTLSSSKNNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKS 80 (362)
T ss_dssp CCCCBCCCEEEEESCEECTTSCEESSEEEEEEEEECCCTTSCCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEETTSS
T ss_pred CCCCCEEEEEEECCCEECCCCCCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCHHCCCCCCCCCCCCCHHHHHCCCCCC
T ss_conf 97673666688518756689887689569999630338889988998788776321155677667883358884599976
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 lDt~~yfVI~~n~lG~~~~ss~~~s~~p~~~~~yg~~fP~~t~~D~v~~~~~ll~~LGI~~l~~viG~SmGGmqAl~wA~ 160 (362)
T d2pl5a1 81 FDTNQYFIICSNVIGGCKGSSGPLSIHPETSTPYGSRFPFVSIQDMVKAQKLLVESLGIEKLFCVAGGSMGGMQALEWSI 160 (362)
T ss_dssp EETTTCEEEEECCTTCSSSSSSTTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHHTTCSSEEEEEEETHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHH
T ss_conf 47553579962335676666675420012345557677520168899999999997186726777403577889999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~yPd~v~~~v~ia~sa~~s~~~~~~~~~~~~aI~~Dp~~~~G~Y~~~~P~~GL~~AR~~~~~~y~s~~~~~~~f~~~~~~ 240 (362)
T d2pl5a1 161 AYPNSLSNCIVMASTAEHSAMQIAFNEVGRQAILSDPNWKNGLYDENSPRKGLALARMVGHITYLSDDKMREKFGRNPPR 240 (362)
T ss_dssp HSTTSEEEEEEESCCSBCCHHHHHHHHHHHHHHHTSTTCGGGTCSSSCCHHHHHHHHHHHHHTTBCHHHHHHHHTTSCCS
T ss_pred HCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCC
T ss_conf 48367664001346533677799999999999844974236875667836799999999999870926666563333444
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~ve~yl~~~g~k~~~rfDan~yl~l~~a~~~~Di~~~~~l~~aL~~I~AkvLvi~~~sD~lFpp~~~~~~a~ 320 (362)
T d2pl5a1 241 GNILSTDFAVGSYLIYQGESFVDRFDANSYIYVTKALDHYSLGKGKELTAALSNATCRFLVVSYSSDWLYPPAQSREIVK 320 (362)
T ss_dssp SCTTTTTTTSCGGGGSTTCCSSSCCCHHHHHHHHHHHHHCBCCSHHHHHHHHTTCCSEEEEEEETTCCSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHH
T ss_conf 55442067799999998988874078778999986311146333225999996189988999857552759999999999
Q ss_pred -----------------------------------------C
Q ss_conf -----------------------------------------9
Q 000711 482 -----------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------s 482 (1338)
+
T Consensus 321 ~l~~a~~~v~~~eI~S~~GHdaFL~e~~~~~~~I~~FL~~p~ 362 (362)
T d2pl5a1 321 SLEAADKRVFYVELQSGEGHDSFLLKNPKQIEILKGFLENPN 362 (362)
T ss_dssp HHHHTTCCEEEEEECCCBSSGGGGSCCHHHHHHHHHHHHCCC
T ss_pred HHHHCCCCEEEEEECCCCCCCHHCCCHHHHHHHHHHHHCCCC
T ss_conf 997579976999948999742105488999999999973999
|
| >d2drwa1 e.3.1.1 (A:2-363) D-Amino acid amidase DaaA {Ochrobactrum anthropi [TaxId: 529]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta-lactamase/transpeptidase-like superfamily: beta-lactamase/transpeptidase-like family: beta-Lactamase/D-ala carboxypeptidase domain: D-Amino acid amidase DaaA species: Ochrobactrum anthropi [TaxId: 529]
Probab=100.00 E-value=0 Score=27244.12 Aligned_cols=1 Identities=100% Similarity=0.869 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~i~~~~~~~~~~g~~g~~v~v~~~g~~v~~~~~G~ad~~~~~p~t~dt~f~i~SvsK~~ta~~i~~lve~G~l~l 80 (362)
T d2drwa1 1 SDLNNAIQGILDDHVARGVVGVSLALCLPGEETSLYQSGYADKFNKMPMTGDHLFRIASCTKSFIATGLHLLVQDGTVDL 80 (362)
T ss_dssp CHHHHHHHHHHHHHHTTTCCEEEEEEECTTSCEEEEEEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHHHHHTTSCCT
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCC
T ss_conf 95789999999999775997289999999999999857882056698799998697115689999999999997699877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 dd~v~~ylp~~~~~~~iTi~~LL~htSGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~Ysn~~~~llg~ii 160 (362)
T d2drwa1 81 DEPITRWFPDLPKAAQMPVRILLNHRSGLPDFETSMPMISDKSWTAQEIVDFSFRHGVQKEPWHGMEYSNTGYVLAGMII 160 (362)
T ss_dssp TSBGGGTCTTSTTGGGCBGGGGTTTCSCCCCCTTTSBSSCCCCCCHHHHHHHHHHHSCCCCTTSSCCCCSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEECCCCCCEECCCCHH
T ss_conf 76664420354434332335555326899764332223332321026777766406766532201102454311043022
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 e~~tg~~~~~~~~e~i~~PLgm~~T~~~~~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (362)
T d2drwa1 161 AHETGKPYSDHLRSRIFAPLGMKDTWVGTHETFPIEREARGYMHAAADDENPQWDVSGAGDPVDGVWDSTEWFPLSGANA 240 (362)
T ss_dssp HHHHTSCHHHHHHHHTHHHHTCCSCEETTTCCCCGGGBCCCEEECBTTCCSCSSBCTTCCCCBTTEEECTTTSCHHHHGG
T ss_pred HHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 32057526666678888502876523357311454533310211556555643233345676566334621134445566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 aGgl~sta~Dla~~~~~ll~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yG~G~~~~~~~~~~~~gH~G~~~G~~s~~~~~ 320 (362)
T d2drwa1 241 AGDMVSTPRDIVKFLNALFDGRILDQKRLWEMKDNIKPAFFPGSNTVANGHGLLLMRYGSSELKGHLGQIPGHTSIMGRD 320 (362)
T ss_dssp GTCEEECHHHHHHHHHHHHTTSSSCHHHHHHHHTSCEECCCTTSCEEEECSSCEEEEETTEEEEEEEEEETTEEEEEEEC
T ss_pred CCCEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCEEEEEEE
T ss_conf 57527189999999999847997899999999974256535799888704369998459941898246578823999999
Q ss_pred -----------------------------------------C
Q ss_conf -----------------------------------------9
Q 000711 482 -----------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------s 482 (1338)
|
T Consensus 321 p~~~~~iv~l~N~~~~~~~~~~~~~~~~~~~~il~ai~~~~~ 362 (362)
T d2drwa1 321 EETGAALMLIQNSGAGDFESFYLKGVNEPVDRVLEAIKNSRS 362 (362)
T ss_dssp TTTCCEEEEEESEECSSTTSHHHHTTHHHHHHHHHHHHHHTC
T ss_pred ECCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 879989999994999556899999999999999999975649
|
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Mouse (Mus musculus), kif2c [TaxId: 10090]
Probab=100.00 E-value=0 Score=27243.79 Aligned_cols=1 Identities=100% Similarity=0.204 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (362)
T d1v8ka_ 1 PNWEFARMIKEFRVTMECSPLTVTDPIEEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQ 80 (362)
T ss_dssp CCHHHHHHHHHHHHHHTCCTTTTTCTTSCCCEEEEEEECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCE
T ss_conf 96689999999986413489877888888888999980899968863799469998899189981886444655676860
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~f~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifaYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lf~~~~~ 160 (362)
T d1v8ka_ 81 AFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQ 160 (362)
T ss_dssp EEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTS
T ss_pred EEECCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHC
T ss_conf 67678661999998999999999999998741681388632578888603330577876555687133115567777630
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~v~vS~~EIyne~i~DLL~~~~~~~~~~~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~~T~~N~~S 240 (362)
T d1v8ka_ 161 PRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNS 240 (362)
T ss_dssp HHHHTTCCEEEEEEEEEETTEEEETTTTTEEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CC
T ss_pred CCCCCCCHHHEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 12346323311021463277487634577544322124577465898899946889989987414545430245674567
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 SRSH~i~~i~i~~~~~~~~~l~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~~L~~vi~aL~~~~~hiPyR~SkLT~l 320 (362)
T d1v8ka_ 241 SRSHACFQILLRTKGRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQV 320 (362)
T ss_dssp CSSEEEEEEEEESSSSEEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC------CCCCHHHHH
T ss_pred CCEEEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf 51005799999855600136765202566554444453156553332211107789999999856999688746888886
Q ss_pred -----------------------------------------C
Q ss_conf -----------------------------------------9
Q 000711 482 -----------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------s 482 (1338)
+
T Consensus 321 LkdsllGgns~t~~i~~vsp~~~~~~eTl~TL~fa~rak~It 362 (362)
T d1v8ka_ 321 LRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELS 362 (362)
T ss_dssp TTHHHHSSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTTC
T ss_pred HHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 133047998619999996987010899999999999974379
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=100.00 E-value=0 Score=27242.75 Aligned_cols=1 Identities=0% Similarity=0.205 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~e~~ltFdDVlLvP~~Sti~s~r~dVdl~~~l~~~~~~~~~~i~l~iPIIsAnMDTVt~~~mA~~la~~Gglgvih 80 (362)
T d1pvna1 1 AKYYNEPCHTFNEYLLIPGLSTVDCIPSNVNLSTPLVKFQKGQQSEINLKIPLVSAIMQSVSGEKMAIALAREGGISFIF 80 (362)
T ss_dssp CEECSSCBCCGGGEEECCCCBCTTCCGGGCBCCEECSCEETTSCCSCEESSSEEECSCTTTCSHHHHHHHHHTTCEEEEC
T ss_pred CCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCEEEEE
T ss_conf 95456788785566983798767777101360268774024556663569847846888768999999999888977995
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 R~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ag~d~i~IDvAhG~~~~v~~~i~~ir~~~~~~~~IiAGNV 160 (362)
T d1pvna1 81 GSQSIESQAAMVHAVKNFRYLVGAGINTRDFRERVPALVEAGADVLCIDSSDGFSEWQKITIGWIREKYGDKVKVGAGNI 160 (362)
T ss_dssp CSSCHHHHHHHHHHHHTCCCCCEEEECSSSHHHHHHHHHHHTCSEEEECCSCCCBHHHHHHHHHHHHHHGGGSCEEEEEE
T ss_pred ECCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECHHCCCHHHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 05999999998642332023221211013567777777641854775300001015788999999886533103421244
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 aT~e~~~~L~~aGaD~vkVGIG~Gs~CTTr~~tGvG~Pq~sAv~e~a~~~~~~~~~~~~~v~iiaDGGi~~~gdi~KAla 240 (362)
T d1pvna1 161 VDGEGFRYLADAGADFIKIGIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALA 240 (362)
T ss_dssp CSHHHHHHHHHHTCSEEEECSSCSTTBCHHHHTCBCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEE
T ss_conf 67889999997297579844303434343655503771677999999999875332036875353323474662357888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~GAd~VM~G~~lAg~~Espg~~~~~~g~~~k~~~Gm~S~~a~~~~~~~~~~~~~~~~~eG~~~~v~~~g~~~~~~~~l~g 320 (362)
T d1pvna1 241 MGADFIMLGRYFARFEESPTRKVTINGSVMKEYWGEGSSRARNWQRYDLGGKQKLSFEEGVDSYVPYAGKLKDNVEASLN 320 (362)
T ss_dssp TTCSEEEESHHHHTBTTSSSCEEEETTEEEEEEECTTSTTTCCGGGGCSSSCSSCSSCCBCEEEEECCBCHHHHHHHHHH
T ss_pred EECCCEEEHHHHHCCCCCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHH
T ss_conf 71340021115405565577310103513666622531213322212446521036899737996268777889999999
Q ss_pred -----------------------------------------C
Q ss_conf -----------------------------------------9
Q 000711 482 -----------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------s 482 (1338)
-
T Consensus 321 glrs~~~y~G~~~l~~~~~~~~f~~~t~~~~~E~~~H~~~~~ 362 (362)
T d1pvna1 321 KVKSTMCNCGALTIPQLQSKAKITLVSSVSIVEGGAHDVIVK 362 (362)
T ss_dssp HHHHHHHHTTCSBHHHHHHHCEEEEBCHHHHHHHSCCSSEEC
T ss_pred HHHHHHHHCCCCCHHHHHHCCEEEEECCCCCCCCCCCCEEEC
T ss_conf 999987532767599997488999988210211568826739
|
| >d3thia_ c.94.1.1 (A:) Thiaminase I {Paenibacillus thiaminolyticus [TaxId: 49283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: Thiaminase I species: Paenibacillus thiaminolyticus [TaxId: 49283]
Probab=100.00 E-value=0 Score=27242.73 Aligned_cols=1 Identities=0% Similarity=-1.357 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~tl~~~~~~~~p~~~~~~~~~~~~F~~~~P~V~v~~~~~~~~~~~~~~~pDv~~~~~~~~~~~~~~g~l~~L~~~~~~~~ 80 (362)
T d3thia_ 1 ITLKVAIYPYVPDPARFQAAVLDQWQRQEPGVKLEFTDWDSYSADPPDDLDVFVLDSIFLSHFVDAGYLLPFGSQDIDQA 80 (362)
T ss_dssp CEEEEECCSCSSCHHHHHHHHHHHHHHHCTTSEEEECCCCTTTCCCCTTCCEEEEEGGGHHHHHHTTCEECBCGGGCTTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHCCCCCCEEEEECHHHHHHHHHCCCCCCCCHHHHHCC
T ss_conf 98999966788867999999999999988193899996652544489989699989088999998898233871011110
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~dG~~y~vP~~~~~~~~~ynkd~~~~aG~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (362)
T d3thia_ 81 EDVLPFALQGAKRNGEVYGLPQILCTNLLFYRKGDLKIGQVDNIYELYKKIGTSHSEQIPPPQNKGLLINMAGGTTKASM 160 (362)
T ss_dssp GGBCHHHHHHTEETTEECCEEEEEECEEEEEETTCHHHHTCCBHHHHHHHHCCCCCCCSSCCEEEEEEECCCSHHHHHHH
T ss_pred CHHHHHHHHCEEECCEEEEEEEECCCEEEEECHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHH
T ss_conf 01113344311569979997651210799961468997389999973789999999751257887246305877526889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~ 240 (362)
T d3thia_ 161 YLEALIDVTGQYTEYDLLPPLDPLNDKVIRGLRLLINMAGEKPSQYVPEDGDAYVRASWFAQGSGRAFIGYSESMMRMGD 240 (362)
T ss_dssp HHHHHHHHHTCCCCCSSCCCSSSCCHHHHHHHHHHHHHHCHHHHHCCCTTCCTTHHHHHHHHTBEEEEEEETTHHHHHGG
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEECHHHHHHHHH
T ss_conf 99999861885113677633443679999999999997304775334466770122111005818999916587655543
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~P~~~~~~~~~~~~~~~~i~~~s~~~e~A~~fi~fl~s~e~~~~~~~~~g~~~~~~~~~pa~~~~~e~~~~ 320 (362)
T d3thia_ 241 YAEQVRFKPISSSAGQDIPLFYSDVVSVNSKTAHPELAKKLANVMASADTVEQALRPQADGQYPQYLLPARHQVYEALMQ 320 (362)
T ss_dssp GGGTEEEECCBSCSSCCCCEEEEEEEEEETTCSCHHHHHHHHHHHHSHHHHHHHHSCCSTTCCCCCCEESBHHHHHHHTT
T ss_pred CCCCCCEEECCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 06766546415787789875450231101676479999999999719999999998468876742445057999863310
Q ss_pred -----------------------------------------C
Q ss_conf -----------------------------------------9
Q 000711 482 -----------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------s 482 (1338)
-
T Consensus 321 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~e~lg 362 (362)
T d3thia_ 321 DYPIYSELAQIVNKPSNRVFRLGPEVRTWLKDAKQVLPEALG 362 (362)
T ss_dssp TCTHHHHHHHHHTCTTCEECCCCTTHHHHHHHHTTTHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 398699999999987688761799999999999999998609
|
| >d1nqka_ c.1.16.4 (A:) Alkanesulfonate monooxygenase SsuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Bacterial luciferase-like family: Ssud-like monoxygenases domain: Alkanesulfonate monooxygenase SsuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=27242.19 Aligned_cols=1 Identities=0% Similarity=-1.856 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~AE~lGfd~~w~~eh~~~~dp~~~la~la~~T~rI~lgt~V~~ 80 (362)
T d1nqka_ 1 MSLNMFWFLPTHGDGHYLGTEEGSRPVDHGYLQQIAQAADRLGYTGVLIPTGRSCEDAWLVAASMIPVTQRLKFLVALRP 80 (362)
T ss_dssp CCBEEEEECCTTCEESSTTSSTTEECCCHHHHHHHHHHHHHHTCSEEEECCSTTSCCHHHHHHTTSTTCSSCEEEEEECT
T ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCEEEEEEEECC
T ss_conf 92479997456899887888888788999999999999998499999968888888899999999997490699999739
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~P~~~A~~~AtLd~lS~GR~~lGlG~G~~~~e~~~~g~~~~~~~~~~~~~E~~~ilr~l~~~e~v~~~G~~~~~~~~ 160 (362)
T d1nqka_ 81 SVTSPTVAARQAATLDRLSNGRALFNLVTGSDPQELAGDGVFLDHSERYEASAEFTQVWRRLLQRETVDFNGKHIHVRGA 160 (362)
T ss_dssp TTSCHHHHHHHHHHHHHHTTSCEEEEECCCCCHHHHHHHTCCCCTTHHHHHHHHHHHHHHHHTTTCCEEEECSSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCC
T ss_conf 98986999999999999749985268863666888852122220245566678989999875025664554124652587
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~p~~~p~ppi~~a~~~p~~~~~Aa~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Gr~~~~~~~~~~~~~~~~~~~~ 240 (362)
T d1nqka_ 161 KLLFPAIQQPYPPLYFGGSSDVAQELAAEQVDLYLTWGEPPELVKEKIEQVRAKAAAHGRKIRFGIRLHVIVRETNDEAW 240 (362)
T ss_dssp CCSSCCSSSSSSCEEEECSSHHHHHHHHHHCSEEEEECCCHHHHHHHHHHHHHHHHTTTCCCEEEEEEEEEEESSHHHHH
T ss_pred CCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCHHHHH
T ss_conf 54234478997016874265789998874265512458999999999999999999709975242343699944689999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGtpe~V~e~L~~~~ 320 (362)
T d1nqka_ 241 QAAERLISHLDDETIAKAQAAFARTDSVGQQRMAALHNGKRDNLEISPNLWAGVGLVRGGAGTALVGDGPTVAARINEYA 320 (362)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHSCC-----------------CTTEEETTEEGGGGSSSSSCSCEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHH
T ss_conf 98765665430889999986542012100466776530340144433467767777506888708858999999999999
Q ss_pred -----------------------------------------C
Q ss_conf -----------------------------------------9
Q 000711 482 -----------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------s 482 (1338)
-
T Consensus 321 ~~G~d~~~l~~~~~~~~l~~f~eeV~P~l~~~~~~~~~~~~~ 362 (362)
T d1nqka_ 321 ALGIDSFVLSGYPHLEEAYRVGELLFPLLDVAIPEIPQPQPL 362 (362)
T ss_dssp TTTCCEEEEECSSHHHHHHHHHHHTGGGSCBCCCCCCCCCCC
T ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 729998999489998999999998999870135067899998
|
| >d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Isocitrate/Isopropylmalate dehydrogenase-like superfamily: Isocitrate/Isopropylmalate dehydrogenase-like family: Dimeric isocitrate & isopropylmalate dehydrogenases domain: 3-isopropylmalate dehydrogenase, IPMDH species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=27241.96 Aligned_cols=1 Identities=0% Similarity=-1.458 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~kI~vipGDGIGpEV~~~~~~Vl~a~~~~~~~~~e~~~~~~G~~~~~~~G~~lp~et~e~~~~~dail~Gai 80 (362)
T d1vlca_ 1 KIHHHHHHMKIAVLPGDGIGPEVVREALKVLEVVEKKTGKTFEKVFGHIGGDAIDRFGEPLPEETKKICLEADAIFLGSV 80 (362)
T ss_dssp CCCCCCSEEEEEEEEESTHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCTHHHHHHHSSSSCHHHHHHHHHSSEEEEEEC
T ss_pred CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 97768985799998988667999999999999998762997899998457899997789787899999999789871577
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 g~p~~~~~~~~~~~~~~~~~~lR~~ldlyanvRP~r~~~~~~~~~~~~~~~~~~~iD~vivREnteg~Y~g~~~~~~~~~ 160 (362)
T d1vlca_ 81 GGPKWDDLPPEKRPEIGGLLALRKMLNLYANIRPIKVYRSLVHVSPLKEKVIGSGVDLVTVRELSYGVYYGQPRGLDEEK 160 (362)
T ss_dssp CCGGGTTSCSTTSHHHHTHHHHHHHTTCCEEEEEEECCGGGGGGSSSCHHHHTTCCEEEEEEECSSGGGTEEEEEECSSC
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCE
T ss_conf 79986543213477665578899974433220026753034566666555667772379850124675557777788856
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~t~~~~~Riar~Af~~A~~~~k~Vt~v~K~Nv~~~~~lf~~~~~eva~~yp~I~~~~~~vD~~~~~lv~~P~~f 240 (362)
T d1vlca_ 161 GFDTMIYDRKTVERIARTAFEIAKNRRKKVTSVDKANVLYSSMLWRKVVNEVAREYPDVELTHIYVDNAAMQLILKPSQF 240 (362)
T ss_dssp EEEECCCCHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCHHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGC
T ss_pred EEEEEEECHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHCCCCC
T ss_conf 99989943478789999999998618980799943775201589999999999667986999730989999998665777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 dViv~~Nl~GDIlSDl~a~l~GglGl~ps~nig~~~~fE~~HGSApdiaGk~iaNP~a~ils~ammL~~~lg~~~~A~~i 320 (362)
T d1vlca_ 241 DVILTTNMFGDILSDESAALPGSLGLLPSASFGDKNLYEPAGGSAPDIAGKNIANPIAQILSLAMMLEHSFGMVEEARKI 320 (362)
T ss_dssp SEEEECHHHHHHHHHHHTTSSSCGGGCEEEEESSSEEEEESSCCCTTTTTTTCSCCHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred CEEEECCHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 58985306666777899998513332101210422323125686201058986480999999999987346986999999
Q ss_pred -----------------------------------------C
Q ss_conf -----------------------------------------9
Q 000711 482 -----------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------s 482 (1338)
=
T Consensus 321 ~~Av~~~l~~G~~T~Dlg~~~~~~~~T~e~~dav~~~l~~l~ 362 (362)
T d1vlca_ 321 ERAVELVIEEGYRTRDIAEDPEKAVSTSQMGDLICKKLEEIW 362 (362)
T ss_dssp HHHHHHHHHTTCCCGGGCSSGGGCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 999999998599570004699997769999999999999759
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=100.00 E-value=0 Score=27241.56 Aligned_cols=1 Identities=0% Similarity=-0.194 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~q~~~~~l~e~a~~~~~~d~~lll~~y~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~nA~~fl~~~~Q~k~~k~~~~~v~ 80 (362)
T d1svma_ 1 KQVSWKLVTEYAMETKCDDVLLLLGMYLEFQYSFEMCLKCIKKEQPSHYKYHEKHYANAAIFADSKNQKTICQQAVDTVL 80 (362)
T ss_dssp CCCCHHHHHHHHHHTTCCCHHHHHHHHHGGGSCSTTCHHHHTTCCHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97428888988987589739999999998712518889999877789999999860669999873106899999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~kr~~~~~ms~~e~i~~~~~~~~~~~p~~~~~~~~~d~~~~~~il~~l~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 160 (362)
T d1svma_ 81 AKKRVDSLQLTREQMLTNRFNDLLDRMDIMFGSTGSADIEEWMAGVAWLHCLLPKMDSVVYDFLKCMVYNIPKKRYWLFK 160 (362)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTSTTCCCCHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 99997312699899999999999853863334544467888999999998644325899999999998289976769998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 g~~~~gk~~~~~~~~~~~~~~~i~in~s~~rs~~~l~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~DeiD~l~~~~dg~~ 240 (362)
T d1svma_ 161 GPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSV 240 (362)
T ss_dssp CSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTTTTTCCCCSHHHHHHTTHHHHHCSS
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCCCCC
T ss_conf 99998889999999998599789997742011888875777799899999876541068997288750731134568860
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~p~i~ttN~~~~~~~r~~Rf~~~i~~~~~~~~~~~~~~l~~i~~~~~l~~~~~~L~~li~~~s~ 320 (362)
T d1svma_ 241 KVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQSGIALLLMLIWYRPV 320 (362)
T ss_dssp CEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTHHHHTTCTTCHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHCHHHHCCCCCEEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCH
T ss_conf 13444210024553167724650654300122466736886268974789999999984035788888999987368987
Q ss_pred -----------------------------------------C
Q ss_conf -----------------------------------------9
Q 000711 482 -----------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------s 482 (1338)
-
T Consensus 321 ~D~~~~i~~~~~~~~~~l~~ei~~~~~~~~k~~I~~Gk~ile 362 (362)
T d1svma_ 321 AEFAQSIQSRIVEWKERLDKEFSLSVYQKMKFNVAMGIGVLD 362 (362)
T ss_dssp GGSCGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTSCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC
T ss_conf 999999999999999987524149999999999976997779
|
| >d2gjxa1 c.1.8.6 (A:167-528) beta-hexosaminidase A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-N-acetylhexosaminidase catalytic domain domain: beta-hexosaminidase A species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27240.65 Aligned_cols=1 Identities=0% Similarity=-1.657 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 f~~RG~mlD~aR~~~~~~~lk~~id~ma~~K~N~lhlHltD~~~~r~e~~~~p~l~~~ga~~~~~~~yT~~d~~elv~yA 80 (362)
T d2gjxa1 1 FPHRGLLLDTSRHYLPLSSILDTLDVMAYNKLNVFHWHLVDDPSFPYESFTFPELMRKGSYNPVTHIYTAQDVKEVIEYA 80 (362)
T ss_dssp CSEEEEEEETTTSCCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCBCCSSCTHHHHHHSSCTTTSCBCHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 98558677638888089999999999998299389999874787600147873144337868878863899999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~rgI~vIPEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~v~~E~~~lF~~~~iHiGgDE~~~ 160 (362)
T d2gjxa1 81 RLRGIRVLAEFDTPGHTLSWGPGIPGLLTPCYSGSEPSGTFGPVNPSLNNTYEFMSTFFLEVSSVFPDFYLHLGGDEVDF 160 (362)
T ss_dssp HHTTCEEEEECCCSSSCTTTTTTSTTCEEEEESSSSEEEEEEEECTTCHHHHHHHHHHHHHHHHHCCSSEEECCCCSCCS
T ss_pred HHCCCEEEECCCCCCHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 97598798536665046899874833137665788877755665777377899899999999885146537740540124
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~w~~~p~~~~~~~~~g~~~~~~~l~~~f~~~~~~~l~~~gk~~i~W~d~~~~~~~l~~d~ii~~W~~~~~~~~~~~~~~ 240 (362)
T d2gjxa1 161 TCWKSNPEIQDFMRKKGFGEDFKQLESFYIQTLLDIVSSYGKGYVVWQEVFDNKVKIQPDTIIQVWREDIPVNYMKELEL 240 (362)
T ss_dssp HHHHHCHHHHHHHHHHTCTTCSHHHHHHHHHHHHHHHHTTTCEEEEEHHHHHTTCCCCTTCEEEECCSSSSSCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHH
T ss_conf 43336878899998617788999999999999999999739706744410256777899872564314543668989999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~G~~~i~s~~~yl~~~~~g~~w~~~y~~~p~~~~~~~~~~~~ilG~e~~lW~E~i~~~~l~~~~~PRl~A~AE~~Ws 320 (362)
T d2gjxa1 241 VTKAGFRALLSAPWYLNRISYGPDWKDFYVVEPLAFEGTPEQKALVIGGEACMWGEYVDNTNLVPRLWPRAGAVAERLWS 320 (362)
T ss_dssp HHHTTCEEEECTTCCTTSCBSSCTHHHHHHCCTTCSSCCHHHHTTEEEEEEEECTTSCSTTTHHHHHTTHHHHHHHHHHS
T ss_pred HHHCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 97579859981674256567777656545531036766865650550347770107778510688899799999999859
Q ss_pred -----------------------------------------C
Q ss_conf -----------------------------------------9
Q 000711 482 -----------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~d~~~f~~Rl~~~~~rL~~~Gi~~~p~~~~~c~~~~~~ 362 (362)
T d2gjxa1 321 NKLTSDLTFAYERLSHFRCELLRRGVQAQPLNVGFCEQEFEQ 362 (362)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCSSCCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCC
T ss_conf 987889999999999999999977998769998645420329
|
| >d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Sky1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=27240.20 Aligned_cols=1 Identities=0% Similarity=-1.390 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~p~~~g~~~~~~rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~ 80 (362)
T d1q8ya_ 1 YHPAFKGEPYKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGAN 80 (362)
T ss_dssp CCCCCTTCEETTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHT
T ss_pred CCCCCCCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCC
T ss_conf 97888888844785799899750778189999999999799999983431336899999999998401455555422767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~~IvHrDlKp~NIll~ 160 (362)
T d1q8ya_ 81 HILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLME 160 (362)
T ss_dssp TBCCCCEEEEEEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEE
T ss_pred CEEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEE
T ss_conf 64789987631256520234320003542000001223467868999999999999988876405864656770570563
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~kl~dfg~s~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~ 240 (362)
T d1q8ya_ 161 IVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKD 240 (362)
T ss_dssp EEETTTTEEEEEECCCTTCEETTBCCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CH
T ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCH
T ss_conf 05765644305675314421234454223665210571321466777643201237899999878899898755432102
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rp 320 (362)
T d1q8ya_ 241 DDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRA 320 (362)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCB
T ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCC
T ss_conf 68999999983799878862453220001320122024323577644421000156743589999999998779945790
Q ss_pred -----------------------------------------C
Q ss_conf -----------------------------------------9
Q 000711 482 -----------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------s 482 (1338)
-
T Consensus 321 ta~e~L~Hp~f~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 362 (362)
T d1q8ya_ 321 DAGGLVNHPWLKDTLGMEEIRVPDRELYGSGSDIPGWFEEVR 362 (362)
T ss_dssp CHHHHHTCGGGTTCTTCTTCCCTTSCTTCBSTTSTTSSSCCC
T ss_pred CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC
T ss_conf 899996693407898744477998666788899984354409
|
| >d1qjwa_ c.6.1.1 (A:) Cellobiohydrolase II (Cel6) {Trichoderma reesei, Cel6a [TaxId: 51453]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: 7-stranded beta/alpha barrel superfamily: Glycosyl hydrolases family 6, cellulases family: Glycosyl hydrolases family 6, cellulases domain: Cellobiohydrolase II (Cel6) species: Trichoderma reesei, Cel6a [TaxId: 51453]
Probab=100.00 E-value=0 Score=27239.16 Aligned_cols=1 Identities=0% Similarity=-0.526 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~gNPf~g~~~yvnP~y~a~v~~~a~~~~~~~~~~~~~~ia~~Pta~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (362)
T d1qjwa_ 1 ATYSGNPFVGVTPWANAYYASEVSSLAIPSLTGAMATAAAAVAKVPSFMWLDTLDKTPLMEQTLADIRTANKNGGNYAGQ 80 (362)
T ss_dssp CCCSSCTTTTSEECCCHHHHHHHHHHTGGGCCHHHHHHHHHHTTSCCCEEECSGGGHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCCCCCCCEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 97678998897331473058899998751368788999999846780698237788740689999999998726887228
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 lV~Y~iP~RDC~a~ss~G~~~~~~~g~~~Yk~Yid~Ia~~~~~~~~~~~vvIlEPDsL~nlvt~~~~~~c~~~~~~~~~~ 160 (362)
T d1qjwa_ 81 FVVFDLPDRDCAALASNGEYSIADGGVAKYKNYIDTIRQIVVEYSDIRTLLVIEPDSLANLVTNLGTPKCANAQSAYLEC 160 (362)
T ss_dssp EEECCCTTCSTTCSTTCCSCCGGGTHHHHHHHHHHHHHHHHHHTTTSCEEEEECSSSHHHHHHCTTSHHHHTTHHHHHHH
T ss_pred EEEECCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99936999971444249986656554688999999999999856897439997776066654057844457789999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 l~yAv~~L~~pnv~vYlDaGhsgWlgw~~n~~~~a~~~a~~l~~ag~~~~~rGFatNVSNy~~~~~~~~~~~t~~n~~~~ 240 (362)
T d1qjwa_ 161 INYAVTQLNLPNVAMYLDAGHAGWLGWPANQDPAAQLFANVYKNASSPRALRGLATNVANYNGWNITSPPSYTQGNAVYN 240 (362)
T ss_dssp HHHHHHHTCCTTEEEEEECCCTTTTCSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESTTSCCCSSCSSCCGGGTTCSCCS
T ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999970899748999788776678743214789999999984667542327898556887766677765445675514
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 e~~Y~~~l~~~l~~~G~~~~~fVIDTsRNG~gp~~~~~~g~WCNp~G~glG~~Pt~~t~~~~vDA~lWIK~PGESDG~~~ 320 (362)
T d1qjwa_ 241 EKLYIHAIGPLLANHGWSNAFFITDQGRSGKQPTGQQQWGDWCNVIGTGFGIRPSANTGDSLLDSFVWVKPGGECDGTSD 320 (362)
T ss_dssp HHHHHHHHHHHHHHTTCCSCEEEEECTTCSSSSCSCSSTTCCSSBSSCCCCSCCBSCCCCTTEEEEECCSCTTBCSCCCC
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCC
T ss_conf 89999999999985368899989857888999988767888879999847899988999876016898578826777888
Q ss_pred -----------------------------------------C
Q ss_conf -----------------------------------------9
Q 000711 482 -----------------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~D~~c~~~~a~~~aP~AG~Wf~~~f~~Lv~nA~P~~~ 362 (362)
T d1qjwa_ 321 SSAPRFDSHCALPDALQPAPQAGAWFQAYFVQLLTNANPSFL 362 (362)
T ss_dssp TTSTTCCGGGGSTTBCSSCCSTTSBCHHHHHHHHHTCSSCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 888777766676567899897777479999999972689779
|
| >d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: E1-beta subunit of pyruvate dehydrogenase (PP module) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27172.46 Aligned_cols=1 Identities=100% Similarity=-0.992 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~p~~~~~lske~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~h~~~GqEa~~vg~~~~l~ 80 (361)
T d2ozla1 1 FANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGIN 80 (361)
T ss_dssp CCSEEEEECCCCEEESCSCCSCSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSC
T ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 98876565353302015779988788899999999999999999999999999779875065687877999999998679
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~D~~~~~yR~~~~~la~G~~~~~~~ae~~gk~~g~~~G~~~~~h~~~~~~~~~~~ivg~~~p~A~G~A~a~k~~~~~~v 160 (361)
T d2ozla1 81 PTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAKNFYGGNGIVGAQVPLGAGIALACKYNGKDEV 160 (361)
T ss_dssp TTSEEECCSCCHHHHHHTTCCHHHHHHHHTTCTTSTTTTSSCTTCCCBTTBCCCCCSTTTHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCEECCCCCCHHEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCE
T ss_conf 55785144444210223104610223312687565566554400123466667645445655157899997654058976
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~GDGa~~eG~f~Ealn~A~~~~lPvifv~eNN~yaist~~~~~~~~~~~~~~~~~~~~~~vdGnD~~av~~a~~~A 240 (361)
T d2ozla1 161 CLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFA 240 (361)
T ss_dssp EEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEECSEETTEEHHHHCSCCCGGGTTTTSCEEEEETTCHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHH
T ss_conf 99972688766763236555554326765899986786667770110354220001365415996267705799999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~R~g~gP~liE~~TyR~~gHs~~D~~~~YR~~~Ei~~~~~k~DPi~~~~~~Li~~g~~se~e~~~i~~ei~~~V~~A 320 (361)
T d2ozla1 241 AAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDA 320 (361)
T ss_dssp HHHHHTTCCCEEEEEECCCSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99986069888999865568887666652124777888744413899999999999879999999999999999999999
Q ss_pred ----------------------------------------C
Q ss_conf ----------------------------------------9
Q 000711 482 ----------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------s 482 (1338)
|
T Consensus 321 ~~~A~~sp~P~~~~l~~~VYa~~~p~~~~~~~~~~~~~~~~ 361 (361)
T d2ozla1 321 AQFATADPEPPLEELGYHIYSSDPPFEVRGANQWIKFKSVS 361 (361)
T ss_dssp HHHHHHSCCCCGGGTTCSSSSSCCCEEEECSBTTCEEEECC
T ss_pred HHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 99998588969899973216899807877689996116789
|
| >d1x1ia1 a.102.3.2 (A:26-386) Xanthan lyase {Bacillus sp. gl1 [TaxId: 84635]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Chondroitin AC/alginate lyase family: Hyaluronate lyase-like catalytic, N-terminal domain domain: Xanthan lyase species: Bacillus sp. gl1 [TaxId: 84635]
Probab=100.00 E-value=0 Score=27169.71 Aligned_cols=1 Identities=0% Similarity=0.504 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 sdd~~~lr~rw~~~l~g~~~~d~~d~~~~~~l~~l~~~A~~~~~~~~~~~~~~~lW~~l~~~~~~~~l~~~~~rl~~mA~ 80 (361)
T d1x1ia1 1 SDEFDALRIKWATLLTGGPALDPADSDIAARTDKLAQDANDYWEDMDLSSSRTYIWYALRGNGTSDNVNAVYERLRTMAL 80 (361)
T ss_dssp CCHHHHHHHHHHHHHHCCTTCCTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCSCSSGGGCCTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 91899999999999708876786768999999999999997787458887766767888766630479999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 Ay~~pgs~ly~d~~l~~~I~~al~~~~~~~y~~~~~~~~~NWW~~eIg~P~~l~~~liLl~d~l~~~~~~~~~~~i~~f~ 160 (361)
T d1x1ia1 81 AATTVGSSLYGNADLKEDILDALDWLYVNSYNSTRSRSAYNWWHWQLGIPMSLNDIAVLLYDDISAARMATYMDTIDYFT 160 (361)
T ss_dssp HHHSTTCTTTTCHHHHHHHHHHHHHHHHHTSSTTSCTTSSSHHHHHTHHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHHC
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf 98299985538999999999999999971888888998999125551757999999998514169999999998999857
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 p~~~~TGaN~~d~a~~~~~rglL~~d~~~~~~a~~~i~~~~~~~~v~~gdG~~~DgSf~qH~~~~Y~G~YG~~~l~~~~~ 240 (361)
T d1x1ia1 161 PSIGLTGAARAWQAIVVGVRAVIVKDAVKLAAARNGLSGTGIFPYATGGDGFYADGSFVQHTTFAYTGGYGSSVLETTAN 240 (361)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTSTTSSSCCSSSSEECTTSCEEETTTEECTTTHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEECCCCCCCCEECCCCEECCCCEECCCCCHHHHHHHHHH
T ss_conf 89886530788789999999998469999999999976401305526888651478634257710167533999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~l~gT~~~~~~~~~~~l~~~i~~g~~~~i~~g~~~~~v~GR~ISR~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~ 320 (361)
T d1x1ia1 241 LMYLLSGSTWSVSDPNQSNVWQWIYEAYRPLLYKGAMMDMVRGREISRSYAQDHAVGHGIVASIVRLAQFAPAPHAAAFK 320 (361)
T ss_dssp HHHHHTTSTTCCCCGGGGHHHHHHHHTTGGGEETTEECGGGSGGGGGCTTCCHHHHHHHHHHHHHHHTTTCCTTHHHHHH
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 99997799887887899999999996002574377016657764014788654457999999999987229999999999
Q ss_pred ----------------------------------------C
Q ss_conf ----------------------------------------9
Q 000711 482 ----------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------s 482 (1338)
+
T Consensus 321 ~~~k~~~~~d~~~~~~~~~~~~~~~~~~~ll~d~~i~~~~~ 361 (361)
T d1x1ia1 321 QIAKRVIQEDTFSSFYGDVSTDTIRLAKAIVDDPSIAPAAA 361 (361)
T ss_dssp HHHHHHHHHCCSSCGGGGSCHHHHHHHHHHHTCTTCCCCCC
T ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99999986076654235887889999999856898897879
|
| >d1dhsa_ c.31.1.1 (A:) Deoxyhypusine synthase, DHS {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Deoxyhypusine synthase, DHS domain: Deoxyhypusine synthase, DHS species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27168.95 Aligned_cols=1 Identities=0% Similarity=0.338 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~p~~a~~~v~~~s~~~p~~~~~V~g~df~~~~~~~~ll~~~~~~GFqA~~Lg~A~~i~~~Mi~~~~~~~~~~~~~~~~~~ 80 (361)
T d1dhsa_ 1 APAGALAAVLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFGRAVQQVNAMIEKKLEPLSQDEDQHADLT 80 (361)
T ss_dssp CCHHHHHHHSCCCCCCCTTCCCCCCCCGGGCCCHHHHHHGGGGTCHHHHHHHHHHHHHHHHHHHHTCCC-----------
T ss_pred CCHHHHHCCEECCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 95045424341678899999744178778998999999999873930788999999999998752257765422222234
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~ctIfLt~agam~saGlr~~i~~LIr~g~Vd~IVtTga~lehDi~~~~g~~y~g~f~~dd~~Lr~~ginRIgd 160 (361)
T d1dhsa_ 81 QSRRPLTSCTIFLGYTSNLISSGIRETIRYLVQHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENGINRIGN 160 (361)
T ss_dssp ------CSSEEEEEECTHHHHSTHHHHHHHHHHTTCCSEEEECHHHHHHHHHTTTSCCEECCTTCCHHHHHHTTEEEETT
T ss_pred CHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCC
T ss_conf 00125666438986144411465799999999859977898068850399999808641076568848876437651220
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 v~Ipee~~~~~e~~i~~il~~~~~e~~~~~~~~~~~e~i~~lg~~i~~~~Sil~~A~~~~vPVf~Pa~~DssiG~~l~~~ 240 (361)
T d1dhsa_ 161 LLVPNENYCKFEDWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGSLGDMIFFH 240 (361)
T ss_dssp EEEETHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHCCTTCHHHHHHHTTCCEECTTTTSSHHHHHHHHH
T ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHH
T ss_conf 63177999999999999999999985404776464999999974268952499999982997654776516699999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~iD~~~D~~~l~~~~~~~~~~G~i~iGGGvpKh~i~~~~l~r~g~dyavqItta~~~dGslSGA~p~EaiSWG 320 (361)
T d1dhsa_ 241 SYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGADYAVYINTAQEFDGSDSGARPDEAVSWG 320 (361)
T ss_dssp HHHSTTCCCCSHHHHHHHHHHHHTCSSEEEEEESCTHHHHHHHHHHHTTTSBSEEEEECCCCSTTCCSTTCCHHHHHHHT
T ss_pred HHCCCCCEEEHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 96189953559999999999987466762699959826378776455317998799970799986766689833013057
Q ss_pred ----------------------------------------C
Q ss_conf ----------------------------------------9
Q 000711 482 ----------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------s 482 (1338)
-
T Consensus 321 Ki~~~a~~v~V~~DATIv~PLl~a~~~~k~~~~~~~~~~~~ 361 (361)
T d1dhsa_ 321 KIRVDAQPVKVYADASLVFPLLVAETFAQKMDAFMHEKNED 361 (361)
T ss_dssp SBCTTCCCEEECSCHHHHHHHHHHHTGGGGHHHHHHHTTCC
T ss_pred CCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 61789883799960779999999999975401124322489
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=27167.73 Aligned_cols=1 Identities=0% Similarity=-0.826 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~l~~pGP~~~~~~V~~A~~~~~~~~~~~~~~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~~~~~~~~ 80 (361)
T d1m32a_ 1 YLLLTPGPLTTSRTVKEAMLFDSCTWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVL 80 (361)
T ss_dssp CEECSSSSCCCCHHHHHTTCCCCCTTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEE
T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 95036999877799999851544698868999999999999999829899988999889789999999998654224653
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tG~~~~i~~i~~~~~~~g~~~ 160 (361)
T d1m32a_ 81 IVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTY 160 (361)
T ss_dssp EEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEE
T ss_pred EEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 01101223457777655301233222234678640256899874247662699843002342011234442211452146
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~vDa~qs~G~~~~d~~~~~~D~~~~s~~K~l~gp~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 240 (361)
T d1m32a_ 161 IVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSP 240 (361)
T ss_dssp EEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCC
T ss_pred EEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEECHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCC
T ss_conf 75200256745532233445268763034533799866789625554100024566432200111011234566678777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~rs~~v~~~~~p~~~~~~~~~~~~~l~~~g 320 (361)
T d1m32a_ 241 THTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQG 320 (361)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCC
T ss_conf 10446899999999985003566788899887777777622875467856649967999899988779999999999889
Q ss_pred ----------------------------------------C
Q ss_conf ----------------------------------------9
Q 000711 482 ----------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------s 482 (1338)
.
T Consensus 321 i~i~~G~~~~~~~~Ris~~g~~~~~di~~lv~al~~~L~~~ 361 (361)
T d1m32a_ 321 FVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAMYWT 361 (361)
T ss_dssp EECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHCTTC
T ss_pred CEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 28978986889989984788899999999999999975999
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=100.00 E-value=0 Score=27167.22 Aligned_cols=1 Identities=0% Similarity=0.272 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~F~pGP~~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ 80 (361)
T d2c0ra1 1 SERAYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQF 80 (361)
T ss_dssp CCCCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHH
T ss_conf 99873357988188899999999987632146865434576898999999999999999968999878999788725999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ea~~~~l~~~~~~~l~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~tg~~~~~~~i~~ 160 (361)
T d2c0ra1 81 AMIPMNFLKEGQTANYVMTGSWASKALKEAKLIGDTHVAASSEASNYMTLPKLQEIQLQDNAAYLHLTSNETIEGAQFKA 160 (361)
T ss_dssp HHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHSCEEEEEECGGGTTCSCCCGGGCCCCTTEEEEEEESEETTTTEECSS
T ss_pred HHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCCCCCCEEEEEECCCCEECCEEEE
T ss_conf 99985255689823898404111125555430374012102343333415555542046761489972464125115777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~al~~vDavss~g~~~id~~~~di~~~s~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (361)
T d2c0ra1 161 FPDTGSVPLIGDMSSDILSRPFDLNQFGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPP 240 (361)
T ss_dssp CCCCTTSCEEEECTTTTTSSCCCGGGCSEEEEETTTTTCCSSCEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCC
T ss_pred EECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 30468841899860333320234334325897413345245673799876876627443223324120003331014664
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~~~~~~~~~~~~~~~~~~~L~~~G 320 (361)
T d2c0ra1 241 SFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASEELEKEFVKASEQEG 320 (361)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCHHHHHHHHHHHHHTT
T ss_pred CEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 20230115677766502424777789999998756665404654345777431454399997898546999999999788
Q ss_pred ----------------------------------------C
Q ss_conf ----------------------------------------9
Q 000711 482 ----------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------s 482 (1338)
-
T Consensus 321 I~~~~G~~~~g~~RIs~~~~~~~edv~~Lv~~l~~~~~~~~ 361 (361)
T d2c0ra1 321 FVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKRSRG 361 (361)
T ss_dssp EESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred CEEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 88736988678698870688999999999999999999659
|
| >d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Homocysteine S-methyltransferase family: Homocysteine S-methyltransferase domain: Betaine-homocysteine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27164.03 Aligned_cols=1 Identities=0% Similarity=-0.194 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~llerL~~~~ililDGgmGteL~~rG~~~~~~Ws~~~~l~~Pe~V~~iH~~yi~AGAdiI~TNTy~a~~~~l~~~g~~~ 80 (361)
T d1lt7a_ 1 KGILERLNAGEIVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFYASEDKLENRGNYV 80 (361)
T ss_dssp CCHHHHHHTTCCEECCTTHHHHHHHHTC-------------CHHHHHHHHHHHHHHTCSEEEEEC---------------
T ss_pred CHHHHHHCCCCEEEEECHHHHHHHHCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCHHH
T ss_conf 95889862699799978889999977999899988688852959999999999996799998278857879998613266
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~aa~~~a~~~~~~~~~~VaGsigp~~~~~~~~~~~~~~~~~~~q~~~l~~~gvD~il~ETm~~~~Ea~~a 160 (361)
T d1lt7a_ 81 LEKISGQEVNEAAADIARQVADEGDALVAGGVSQTPSYLSAKSETEVKKVFLQQLEVFMKKNVDFLIAEYFEHVEEAVWA 160 (361)
T ss_dssp --------CHHHHHHHHHHHHHTTTCEEEEEECCCHHHHTTCCHHHHHHHHHHHHHHHHHTTCSEEEECCCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 78899999999999998510244321010256678631121104788999999899887504322336777568999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~a~~~~~~Pv~~s~t~~~~g~l~~g~~~e~~~~~~~~~~~~~g~nc~~~p~~~~~~i~~l~~~~~~~~~~~~~~~~p~~ 240 (361)
T d1lt7a_ 161 VETLIASGKPVAATMAIGPEGDLHGVPPGEAAVRLVKAGASIIGVNCHFDPTISLKTVKLMKEGLEAAQLKAHLMSQPLA 240 (361)
T ss_dssp HHHHGGGSSCEEEEECCBTTBSTTSCCHHHHHHHHHHTTCSEEEEESSSCHHHHHHHHHHHHHHHHHTTCCCEEEEECCS
T ss_pred HHHHHHCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 99986036608898787178863677849999988730620555214554676899999999765541455135404652
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~pn~~~~~~~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~Ga~iIGGCCGttP~HI~~la~~l~~~~~~~~p~~~~~~~ 320 (361)
T d1lt7a_ 241 YHTPDANKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPPASEKHGS 320 (361)
T ss_dssp BCCTTCCTTCGGGSTTTTTSCGGGBCCHHHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHTHHHHSSCCC-------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 33778776566789887687665647999999999999987990999898798999999999985145899998888877
Q ss_pred ----------------------------------------C
Q ss_conf ----------------------------------------9
Q 000711 482 ----------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 361 (361)
T d1lt7a_ 321 WGSGLDMHTKPWVRARARKEYWENLRIASGRPYNPSMSKPD 361 (361)
T ss_dssp -------------CTTSCHHHHHHCCCCCSCTTSCSCCCCC
T ss_pred CCCCEECCCCCEECHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 36776426875015446599998626678998881024898
|
| >d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Probab=100.00 E-value=0 Score=27164.32 Aligned_cols=1 Identities=0% Similarity=-1.856 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~v~~~~P~p~G~lHiGH~~~~~i~~Dil~R~~r~~G~~V~~v~g~D~~g~~i~~~A~~~g~~~~~~~~~~~~~~~~ 80 (361)
T d1rqga2 1 MVRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKI 80 (361)
T ss_dssp CCEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCC
T ss_conf 96599944898889873456445629999999999981599267158537650999999998299999999999986000
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~f~~~~~~ 160 (361)
T d1rqga2 81 TFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFAICGRPISFRDSAHYYIKMQDF 160 (361)
T ss_dssp HHHHHTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGTTTCCBCEEEEEEEEEECGGGT
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCHH
T ss_conf 00001222233544566002344553443101368533124664100022011033213589954310263478750113
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~d~~isr~~~wg~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 240 (361)
T d1rqga2 161 AERLKRWIEKQPWKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKP 240 (361)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCCCSSSTTCEECHHHHGGGHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCH
T ss_conf 54432101335433210345542002023333333346435667654346788278750345546564566676667733
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~g~l~~~G~KMSKSlGN~I~~ 320 (361)
T d1rqga2 241 NEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWV 320 (361)
T ss_dssp TTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHTTCCBCSSSCCBCBCCCSBCCEECCEEETTEECBTTTTBSCBH
T ss_pred HHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCEECCCCCCCCCCH
T ss_conf 57777654016886348734655533100148999998632565542014778978897023975898668779988788
Q ss_pred ----------------------------------------C
Q ss_conf ----------------------------------------9
Q 000711 482 ----------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------s 482 (1338)
-
T Consensus 321 ~d~i~~yg~D~lR~~l~~~~p~~~d~dfs~~~~~~~~n~~~ 361 (361)
T d1rqga2 321 HEFLDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEEL 361 (361)
T ss_dssp HHHTTTSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCC
T ss_conf 99998868089999999608888999889999999864589
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=0 Score=27162.02 Aligned_cols=1 Identities=0% Similarity=-1.092 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vihl 80 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHL 80 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEC
T ss_conf 97999888767999999999977997899984798644277787653168847998657898999999975799999989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 Aa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~e~~~ 160 (361)
T d1kewa_ 81 AAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTA 160 (361)
T ss_dssp CSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTTSC
T ss_pred CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 60166666775999999999999999999999841222101468549999344101177866775434567887566889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~g~~~~v~g~g~~~r~~i~v~D~a 240 (361)
T d1kewa_ 161 YAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHA 240 (361)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEECCCCCCCCHHHHHHHHHHCCCCCEEECCCCEEEECEEHHHHH
T ss_conf 99999899999999999999999968989999138568929985769999999997499817947999689078899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~ai~~~~~~~~~~~~~Ni~s~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgw~P~ 320 (361)
T d1kewa_ 241 RALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPL 320 (361)
T ss_dssp HHHHHHHHHCCTTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEECCCTTCCCBCCBCCHHHHHHHCCCCS
T ss_pred HHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCEEEECHHHHHHHHCCCCC
T ss_conf 99999985698899699899997534777767653001233445676543255689999875531578999998799889
Q ss_pred ----------------------------------------C
Q ss_conf ----------------------------------------9
Q 000711 482 ----------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------s 482 (1338)
-
T Consensus 321 ~~l~e~i~~ti~w~~~n~~~~~~~k~~~~~~~~~~~y~~~~ 361 (361)
T d1kewa_ 321 ETFESGIRKTVEWYLANTQWVNNVKSGAYQSWIEQNYEGRQ 361 (361)
T ss_dssp CCHHHHHHHHHHHHHHCHHHHHHSCCHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 89999999999999986998887661778999998515699
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=27161.71 Aligned_cols=1 Identities=0% Similarity=-1.523 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~df~~p~~i~eal~~~~~~~~~~Y~~~~g~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~~ 80 (361)
T d1d2fa_ 1 LLPFTISDMDFATAPCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSE 80 (361)
T ss_dssp CEECCSSSCSSCCCHHHHHHHHHHHTTCCCCCCCSCCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCC
T ss_conf 92738789799998999999999985788899899898999999999999838999802599908889999987653111
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~~~s~~~~~~i~~ 160 (361)
T d1d2fa_ 81 TGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMAD 160 (361)
T ss_dssp TTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 23223233334520368998503437861133332223322211021003677416873044432233320234343200
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~g~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (361)
T d1d2fa_ 161 LCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSP 240 (361)
T ss_dssp HHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSC
T ss_pred HHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 11332200010234332323333456532222233333334454444445420034132267888876510223466510
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~gg~~~~~~l~~~~~~~~~~~~~Ll~~~gv~ 320 (361)
T d1d2fa_ 241 SVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPLNIDDNALQKALIEQEKVA 320 (361)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCSEEEEECGGGCCCHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCEE
T ss_conf 01247889987503411210133322036778888765310223355567415999983589999999999999869999
Q ss_pred ----------------------------------------C
Q ss_conf ----------------------------------------9
Q 000711 482 ----------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------s 482 (1338)
-
T Consensus 321 v~pG~~F~~~~~~~vRis~~~~~e~l~~al~rl~~~l~~lr 361 (361)
T d1d2fa_ 321 IMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAIRAVR 361 (361)
T ss_dssp CEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCC
T ss_conf 98360018899987999971899999999999999999619
|
| >d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate lyase-like domain: Pectate lyase species: Erwinia chrysanthemi, type A [TaxId: 556]
Probab=100.00 E-value=0 Score=27158.99 Aligned_cols=1 Identities=0% Similarity=-0.526 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~s~~~~G~a~~~ggttGG~gg~~g~v~~Vt~l~dL~~al~~~~~p~iI~v~G~I~~~~~~~~~~~~~~~~~ 80 (361)
T d1pe9a_ 1 AELVSDKALESAPTVGWASQNGFTTGGAAATSDNIYIVTNISEFTSALSAGAEAKIIQIKGTIDISGGTPYTDFADQKAR 80 (361)
T ss_dssp CCCCCTTTTCCCCSSSGGGSSSCCCTTTTCCGGGEEEECSHHHHHHHHTTTTSCEEEEECSEEETTTTCCCCSHHHHHHH
T ss_pred CCCCCCCHHHCCCCCCEEECCCCCCCCCCCCCCEEEEECCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCCCC
T ss_conf 95212111322477634351799876888848779996999999998747997089998549978887443332220223
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~i~v~sn~TI~G~g~~~~i~~~gl~i~~~~~~~NVIiRnl~ir~~~~~~~~~~~~~~~~~~~Dai~i~~~s~~VwIDH~ 160 (361)
T d1pe9a_ 81 SQINIPANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHV 160 (361)
T ss_dssp SEEECCSSEEEEECTTCCEEESSEEEEEGGGTCEEEEEESCEEECCCCSSCEEETTTEEECCCCSEEEETTCEEEEEESC
T ss_pred CEEEECCCCEEEEECCCEEEEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECC
T ss_conf 15871898579870688489621699850366426999827865575577765668775667873687517743999852
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 s~s~~~~~~~~~~~~~~~~~~~~Dg~~di~~~s~~vTiS~~~f~~h~~~~l~G~~d~~~~~d~g~~~vT~hhN~~~~~~~ 240 (361)
T d1pe9a_ 161 TISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTE 240 (361)
T ss_dssp EEECTTSCGGGCCEETTEECCCCCCSEEECTTCEEEEEESCEEEEEEECEEESCCTTCHHHHTTCCEEEEESCEEEEEEE
T ss_pred EECCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEECCCCCCCCC
T ss_conf 74058766533345567630541025875057431373387546877623735677776555786259997854268757
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 R~P~~r~G~~Hv~NNy~~n~~~~~~~~~~y~~~~~~~a~il~E~NyF~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~ 320 (361)
T d1pe9a_ 241 RAPRVRYGSIHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIANLSASKACKVVKKFNGSIFSDNGSVLNGSA 320 (361)
T ss_dssp CSSEESSCEEEEESCEEEEETTCSSSCCCCSEEECTTCEEEEESCEEEEETCCGGGGGGGEEESSCCEEEEESCEETTEE
T ss_pred CCCCEECCEEEEECCEEECCCCCCCCCCCEEEECCCCCEEEEECEEEECCCCCCCCCCCEEECCCCCEEECCCEEECCCC
T ss_conf 68873076489989665368676430001565057887799985088899987553220012178877955882520741
Q ss_pred ----------------------------------------C
Q ss_conf ----------------------------------------9
Q 000711 482 ----------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~~~~~~~~~~py~y~~~~~a~~v~~~V~~~AGaGkl 361 (361)
T d1pe9a_ 321 VDLSGCGFSAYTSKIPYIYDVQPMTTELAQSITDNAGSGKL 361 (361)
T ss_dssp CCCTTSSCBCCCSCCCSCCCCCCCCHHHHHHHHHHCSTTCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 23368765555667875210456257788988744798879
|
| >d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=100.00 E-value=0 Score=27158.88 Aligned_cols=1 Identities=0% Similarity=0.105 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
|
T Consensus 1 ~~~~~~~~~~~~~q~f~w~~~~~~~~~~gi~~kLdylk~LGv~~Iwl~Pv~~~~~~~~~~gY~~~dy~~~~~~~~~~~vd 80 (361)
T d1mxga2 1 AKYLELEEGGVIMQAFYWDVPGGGIWWDHIRSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQKGTVE 80 (361)
T ss_dssp CCSSCGGGTCCEEECCCTTCCCSSCHHHHHHHHHHHHHHHTCCEEECCCCSEETTGGGCCSSSEEETTCSSCSCBTTBSS
T ss_pred CCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 93124455887999452687887855999999789999649998996957407999889998865665567543456778
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~Gt~~d~~~LV~~aH~~GikVIlD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (361)
T d1mxga2 81 TRFGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNPFVGDYTWTDFSKVASGKYTANYLDFHPNELHCCDEGTFG 160 (361)
T ss_dssp CSSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCCCEEEEETTTTEEEEEECTTCTTCCSCCCGGGBSSSSSCSCCSCCCT
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 78899999999999999779979998603255577656577666556545665567888766555676666554223456
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~giDGfR~Daa~~v~~~f~~~~~~~~~~~~~gE~~~~~~~~~~~~~~~~~~ 240 (361)
T d1mxga2 161 GFPDICHHKEWDQYWLWKSNESYAAYLRSIGFDGWRFDYVKGYGAWVVRDWLNWWGGWAVGEYWDTNVDALLSWAYESGA 240 (361)
T ss_dssp TSCBBCTTSHHHHHHHTSSTTSHHHHHHHTTCCEEEETTGGGSCHHHHHHHHHHHCCCEEECCCCSCHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHCCHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHCCCC
T ss_conf 76423677605689999999987655441687604505421199999987775168733256346788998655532688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~df~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fl~NHD~~R~~~~~~a~a~llt~pGiP~iyYGd~~~~ 320 (361)
T d1mxga2 241 KVFDFPLYYKMDEAFDNNNIPALVYALQNGQTVVSRDPFKAVTFVANHDTDIIWNKYPAYAFILTYEGQPVIFYRDFEEW 320 (361)
T ss_dssp EEECHHHHHHHHHHHTTTCHHHHHHHHHTTCSSTTTCTTTEEEESCCSSCCCCSCHHHHHHHHHHSSSEEEEEHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHEEECCCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCC
T ss_conf 43041589999999944983789999862521025798781336736678010158999999982899017885897566
Q ss_pred ----------------------------------------C
Q ss_conf ----------------------------------------9
Q 000711 482 ----------------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~~~l~~~~~~~~~g~~~~~~~~~d~~~f~R~gd~~~ 361 (361)
T d1mxga2 321 LNKDKLINLIWIHDHLAGGSTTIVYYDNDELIFVRNGDSRR 361 (361)
T ss_dssp SCHHHHHHHHHHHHHTCCSCEEEEEECSSEEEEEECCCSSC
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEECCCCCC
T ss_conf 77079999999999716798478987799899996788889
|
| >d1qo5a_ c.1.10.1 (A:) Fructose-1,6-bisphosphate aldolase {Human (Homo sapiens), liver isozyme [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Fructose-1,6-bisphosphate aldolase species: Human (Homo sapiens), liver isozyme [TaxId: 9606]
Probab=100.00 E-value=0 Score=27098.07 Aligned_cols=1 Identities=0% Similarity=0.204 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
.
T Consensus 1 ~~~~~~~~~e~~~eL~~~a~~~~~~GKGiLAaDeS~gT~~Krl~~igventeenr~~yR~~l~tt~~~~~~~IsGvILfe 80 (360)
T d1qo5a_ 1 AHRFPALTQEQKKELSEIAQSIVANGKGILAADESVGTMGNRLQRIKVENTEENRRQFREILFSVDSSINQSIGGVILFH 80 (360)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHSTTSCEEEEECCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSCGGGGGTEEEEEECT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHCCEEEEECCH
T ss_conf 99877689999999999999981489879982689983777898769999779999998888518703435656898369
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 eTl~q~~~~g~~~~~ll~~kGIvPgIKVDkGl~~l~~~~ge~~t~gLdgL~~Rl~~y~~~Ga~faKwRaVi~i~~~~ps~ 160 (360)
T d1qo5a_ 81 ETLYQKDSQGKLFRNILKEKGIVVGIKLDQGGAPLAGTNKETTIQGLDGLSERCAQYKKDGVDFGKWRAVLRIADQCPSS 160 (360)
T ss_dssp TGGGCBCTTSCBHHHHHHHTTCEEEEECCCCEEECTTSSSCEEECCCTTHHHHHHHHHHTTCCEEEEEEEECCBTTBSCH
T ss_pred HHHHHHCCCCCCHHHHHHHCCCEEEEECCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCH
T ss_conf 99841423677466899865963578348750007667765335662018899999986474445212200245577745
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~I~~na~~laryA~i~q~~GLVPIVEPEVlidg~h~~e~~~~vt~~vl~~l~~~l~~~~V~LeG~lLKpnMv~pG~~~~ 240 (360)
T d1qo5a_ 161 LAIQENANALARYASICQQNGLVPIVEPEVIPDGDHDLEHCQYVTEKVLAAVYKALNDHHVYLEGTLLKPNMVTAGHACT 240 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEEEEEECCCSSCCHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEECCBCCCCCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 88999999999999999971976431433245788746889999999999999887652134678742001025511055
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~va~~Tv~~l~~~vp~~VpgIvfLSGGqS~eeAt~~LnamN~~~~~~pW~lsfSygRALQ~s~Lk~W~g~~~n~ 320 (360)
T d1qo5a_ 241 KKYTPEQVAMATVTALHRTVPAAVPGICFLSGGMSEEDATLNLNAINLCPLPKPWKLSFSYGRALQASALAAWGGKAANK 320 (360)
T ss_dssp CCCCHHHHHHHHHHHHHHHSCTTCCEEEEBCTTCCHHHHHHHHHHHHHCSSCCCSEEEEEESGGGTHHHHHHHTTCGGGH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHCCCCHHH
T ss_conf 55787888899887764303667871001688744888999999986157899976899643756189999857881428
Q ss_pred ---------------------------------------C
Q ss_conf ---------------------------------------9
Q 000711 482 ---------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------s 482 (1338)
|
T Consensus 321 ~~aQ~~~~~ra~~Ns~A~~G~y~~~~~~~~~~~~~lfva~ 360 (360)
T d1qo5a_ 321 EATQEAFMKRAMANCQAAKGQYVHTGSSGAASTQSLFTAC 360 (360)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCCCSCCCHHHHSCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCC
T ss_conf 9999999999986068756740788887865443003139
|
| >d1sq1a_ d.258.1.1 (A:) Chorismate synthase, AroC {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Chorismate synthase, AroC superfamily: Chorismate synthase, AroC family: Chorismate synthase, AroC domain: Chorismate synthase, AroC species: Campylobacter jejuni [TaxId: 197]
Probab=100.00 E-value=0 Score=27094.66 Aligned_cols=1 Identities=0% Similarity=-1.025 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 mntfG~~~r~tt~GESHG~~lg~vidG~PaGl~i~~e~I~~~L~RR~pg~~~~t~R~E~D~veilSGv~~G~TtG~PI~~ 80 (360)
T d1sq1a_ 1 MNTFGTRLKFTSFGESHGVAVGCIIDGMPAGVKFDEEFLQNELDKRKGGSKFATPRKESDKAQVLSGVFEGYTTGHPIAI 80 (360)
T ss_dssp CCEECSSSEEEEECCGGGSCEEEEEECCCSSCBCCHHHHHHHHHHTTC-----------CCEEECSSEETTEECSSCEEE
T ss_pred CCCCCCCEEEEEEECCCCCEEEEEEECCCCCCEECHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCEECCCEEEE
T ss_conf 98775523898525578884489993409588609999999996179999889867888717992263689876750078
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~I~N~d~~s~dy~~~~~~pRPGHAD~~~~~KYg~~D~RgggRsSaReTa~rVaaGaiAk~lL~~~gI~v~s~v~~IG~~~ 160 (360)
T d1sq1a_ 81 VVFNENAHSKDYDNLKDLFRPAHADFTYFYKYGIRDHRGGGRSSARESVARVAGGAVAAMLLREFDICVQSGVFGVGTFV 160 (360)
T ss_dssp EEC----------------------------------------CCCTHHHHHHHHHHHHHHHHTTTCEEEEEEEEETTEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEEEEEEEE
T ss_conf 88716787310466623678750777876553985776887515999999999999999999862100666788996661
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~s~vrc~d~~~~~~m~~~I~~ak~~gDSvGG~ve~~~~gvP~GLG~p~fdkLda~LA~A~mSIpAv 240 (360)
T d1sq1a_ 161 SNLKEEEFDFEFAKKSEIFCLDPKLESDFKNEILNARNSKDSVGAAVFTKVSGMLIGLGEVLYDKLDSKLAHALMGINAV 240 (360)
T ss_dssp CCSCGGGSCHHHHHHSTTCBSCTTTHHHHHHHHHHHHHTTCCCCEEEEEEEESCCBSCSBTTTBCHHHHHHHHHHTSTTE
T ss_pred CCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCEECCCCCHHHHHHHHCCCCC
T ss_conf 47776646877732573347546778999999999854578763189999846997648601365135888777336310
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 KGVE~G~Gf~~a~~~GSe~nD~~~~~~~~tN~~GGi~GGiSnG~pi~~rva~KP~sSi~k~q~TVd~~~~~~~~~~~gRh 320 (360)
T d1sq1a_ 241 KAVEIGEGINASKMRGSCNNDALKDGKFLSNHSGGILGGISNGENLILKTYFKPTPSIFAKQESIDKFGNNLKFELKGRH 320 (360)
T ss_dssp EEEEETTGGGGGGSCHHHHCCCCSSSSCSCCTTCSEETTEEBSSCEEEEEEECCCC---------------------CCS
T ss_pred EEEEECCCHHHHHHHHHHCCCHHHCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCC
T ss_conf 01530565565420066462222136644456786000235888628999978875567753222178988788557877
Q ss_pred ---------------------------------------C
Q ss_conf ---------------------------------------9
Q 000711 482 ---------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------s 482 (1338)
-
T Consensus 321 Dpc~vprA~~V~Eam~a~vlad~~L~~~~~~~~~~~~~~g 360 (360)
T d1sq1a_ 321 DPCVGVRGSVVASAMVRLVLADCLLLNASANLNNLKNAYG 360 (360)
T ss_dssp CSCTHHHHHHHHHHHHHHHHHHHHHHTGGGSHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC
T ss_conf 8707165049999999999999999845779999875449
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=100.00 E-value=0 Score=27092.42 Aligned_cols=1 Identities=0% Similarity=-0.725 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~nF~pGP~~~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~ 80 (360)
T d1w23a_ 1 VKQVFNFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQF 80 (360)
T ss_dssp CCCCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHH
T ss_conf 98436707988488999999999998753046865434576788999999999999999968999878999478489999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~i~~ 160 (360)
T d1w23a_ 81 TMLPMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAASTKANSYQSIPDFSEFQLNENDAYLHITSNNTIYGTQYQN 160 (360)
T ss_dssp HHHHHHHCCTTCEEEEEECSHHHHHHHHHHHTTSEEEEEEECGGGTSCSCCCGGGCCCCTTEEEEEEESEETTTTEECSS
T ss_pred HHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHCCCCCCCCEEEECCCCCCCCEEEEE
T ss_conf 99876411467654155324123334788777640201202444453201112200335553213754881665104432
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~g~l~ivDavqs~g~~~id~~~~~vd~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (360)
T d1w23a_ 161 FPEINHAPLIADMSSDILSRPLKVNQFGMIYAGAQKNLGPSGVTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPP 240 (360)
T ss_dssp CCCCCSSCEEEECTTTTTSSCCCGGGCSEEEEETTTTTSCTTCEEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCC
T ss_pred CCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEECHHHHCCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 21463036986113453432243565542488504434457765046703434313445774200124543100013331
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~vvsf~i~~~~~~~~~~~~l~~~G 320 (360)
T d1w23a_ 241 TFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNEELNQQFLAKAKEQG 320 (360)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSHHHHHHHHHHHHHTT
T ss_pred CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 20120015778777641004899999999999888887633520036888201640699998599735999999999789
Q ss_pred ---------------------------------------C
Q ss_conf ---------------------------------------9
Q 000711 482 ---------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------s 482 (1338)
+
T Consensus 321 I~~~~G~~~~ggiRiS~~~~~t~e~V~~Li~~~~~~~~~~ 360 (360)
T d1w23a_ 321 FVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKENA 360 (360)
T ss_dssp EESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCC
T ss_conf 8665077766717899508999999999999999998559
|
| >d1jdwa_ d.126.1.2 (A:) L-arginine: glycine amidinotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pentein, beta/alpha-propeller superfamily: Pentein family: Amidinotransferase domain: L-arginine: glycine amidinotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27091.17 Aligned_cols=1 Identities=0% Similarity=-0.492 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~vn~~sE~~~Lk~VivGr~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ea~ee~d~l~~~Le~~GV~V~r 80 (360)
T d1jdwa_ 1 CPVSSYNEWDPLEEVIVGRAENACVPPFTIEVKANTYEKYWPFYQKQGGHYFPKDHLKKAVAEIEEMCNILKTEGVTVRR 80 (360)
T ss_dssp CCCBBCBSSSCEEEEEECBCTTCBCCCCCHHHHTTSCGGGHHHHHHHTTSBSCHHHHHHHHHHHHHHHHHHHHTTCEEEC
T ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 99722767463739999517767799976221347856665542332146455999999999999999999876967861
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 p~~~~~~~~~~~~~~~~~~~~~~~~RD~~~~ig~~~i~~~~~~~~r~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (360)
T d1jdwa_ 81 PDPIDWSLKYKTPDFESTGLYSAMPRDILIVVGNEIIEAPMAWRSRFFEYRAYRSIIKDYFHRGAKWTTAPKPTMADELY 160 (360)
T ss_dssp CCCCCTTCEEECSSCEEECCCBCCHHHHEEEEBTEEEECCBSCGGGTTGGGGTHHHHHHHHHTTCEEEECCCCCCCGGGB
T ss_pred CCCCCCCCCCCHHHHCCCCCCCCCCCCEEEEECCCCEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCCC
T ss_conf 46233310101000003675545476202663794233333456553524454157887514675304435543345333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~H 240 (360)
T d1jdwa_ 161 NQDYPIHSVEDRHKLAAQGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNYLGIEWMRRHLAPDYRVHIISFKDPNPMH 240 (360)
T ss_dssp CTTCCCSSHHHHHHHHHHTCCSBCSSSCCBCGGGEEEETTEEEECCCSSCCHHHHHHHHHHHTTTCEEEECCBSSCCSSC
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCEEECCCCEEECCCCEEECCCCCCCHHHHHHHHHHCCCCCCEEECCCCCHHHCC
T ss_conf 45544544454321112463254055125425420111652120234422135899998644665311102336733327
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 lD~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~N~LsI~p~~Vi~~~~n~~~~~~L 320 (360)
T d1jdwa_ 241 IDATFNIIGPGIVLSNPDRPCHQIDLFKKAGWTIITPPTPIIPDDHPLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKMF 320 (360)
T ss_dssp STTTEEEEETTEEEECTTSCBTTHHHHHHTTCEEECCCCCCCCTTSCCSSSCGGGGGCCEEEETTEEEEETTCHHHHHHH
T ss_pred CCCEEEEECCCCEEEECCCCCHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHCCEEEEEEECCCEEEECCCCHHHHHHH
T ss_conf 66226871587189951336355531332585358535223454542153453051589997699999908889999999
Q ss_pred ---------------------------------------C
Q ss_conf ---------------------------------------9
Q 000711 482 ---------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------s 482 (1338)
-
T Consensus 321 ~~~Gi~vi~i~~~e~~~~~GG~~CmT~pl~Reg~~e~y~~ 360 (360)
T d1jdwa_ 321 EKLGITTIKVNIRNANSLGGGFHCWTCDVRRRGTLQSYLD 360 (360)
T ss_dssp HHTTCEEEEECCHHHHTTTCCTTTTEEEEEESCCCCCSCC
T ss_pred HHCCCEEEEECHHHHHCCCCCCEEECCCEEECCCCCCCCC
T ss_conf 9888989992626543159997384725087786554669
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=27090.64 Aligned_cols=1 Identities=0% Similarity=-0.194 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~nF~pGP~~~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a 80 (360)
T d1bjna_ 1 QIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAA 80 (360)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHH
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHH
T ss_conf 93774798858899999999998751024686543457678899999999999999996899997799978826888863
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~t~~~~~~~~i 160 (360)
T d1bjna_ 81 VPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKVTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDET 160 (360)
T ss_dssp HHHHHCTTCCEEEEEESSHHHHHHHHHHTTTSEEEEEECEEEETTEEEECCGGGCCCCSSCSCEEECSEETTTTEECCCC
T ss_pred HHHCCCCCCCCCCEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCE
T ss_conf 00102566543330035630344687776417632121012477764035666412577604999655555457652100
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~v~vDa~~~~~~~~vd~~~~dv~~~ss~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (360)
T d1bjna_ 161 PDFGADVVVAADFSSTILSRPIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSILNDNGSMFNTPP 240 (360)
T ss_dssp CCCCTTCCEEEECTTTTTSSCCCGGGCSEEEEETTTTTSSTTCEEEEEEGGGCSCCCTTSCGGGCHHHHHHTTTCSSCCC
T ss_pred ECCCCCCEEEEEEECCCCCEEEEECCCEEEEEECCCCCCCCCCCEEEEEEHHHHHCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 01244522565662352424436513305999726665447776267641012211446774112678876532024444
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~f~~~~~~~~~~~~~~l~~~Gi 320 (360)
T d1bjna_ 241 TFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRMNVPFQLADSALDKLFLEESFAAGL 320 (360)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCSSEEEEEESSGGGHHHHHHHHHHTTE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 30278889999988641068999999999999988755335430125774344523999875885249999999997898
Q ss_pred ---------------------------------------C
Q ss_conf ---------------------------------------9
Q 000711 482 ---------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~G~~~~g~~Ris~~~~~t~edV~~li~~l~e~~~~~~ 360 (360)
T d1bjna_ 321 HALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERRHG 360 (360)
T ss_dssp ECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 7634877567388983488999999999999999999739
|
| >d1xfia_ e.50.1.1 (A:) Hypothetical protein At2g17340 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: AF1104-like superfamily: AF1104-like family: AF1104-like domain: Hypothetical protein At2g17340 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=0 Score=27090.22 Aligned_cols=1 Identities=0% Similarity=-0.592 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~v~~pll~~~~~~~y~~~tv~~~~~~~~~~~~~~~~~~Wl~~f~~~i~~~~~~A~s~~~~~da~~Ra~~f~~~y~~~L~ 80 (360)
T d1xfia_ 1 EMVPFPQLPMPIENNYRACTIPYRFPSDDPKKATPNEISWINVFANSIPSFKKRAESDITVPDAPARAEKFAERYAGILE 80 (360)
T ss_dssp CCBCCTTSCSCCTTTCCSBCSCCCCTTSCTTSCCHHHHHHHHHHHTTHHHHHHHHHTCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 97566466774213766887788887555221526677999999977889999985089999889999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~l~~~p~~~g~~~~~~ll~~~re~~Lr~~Gf~DpY~~~K~~eN~~Al~~lp~~~~~id~i~d~~~~l~~~vr~aiAGNif 160 (360)
T d1xfia_ 81 DLKKDPESHGGPPDGILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFPQVVSLSDAIEDDGKRLENLVRGIFAGNIF 160 (360)
T ss_dssp HHHHCTTGGGCSCCHHHHHHHHHHHHHHTTCSCTTHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99848765576017889999999999976999800999999999999987999999753016079999999999987764
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 D~Ga~~~~~~~~~~~~~~~~~~~~~~~rp~~vDd~d~~~~rl~~~~~k~vly~~DNaGe~Vfd~lL~~~rell~~g~~V~ 240 (360)
T d1xfia_ 161 DLGSAQLAEVFSRDGMSFLASCQNLVPRPWVIDDLENFQAKWINKSWKKAVIFVDNSGADIILGILPFARELLRRGAQVV 240 (360)
T ss_dssp ---------------CCHHHHTTCSCCSSCSEECHHHHHHHHTTTCCCEEEEECCBTTHHHHHTHHHHHHHHHHTTCEEE
T ss_pred HCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 30220021444046426999999854589753669999998735775407999358734999887899999965898499
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 l~v~~~PilNDvT~~El~~~~~~~~~~~~~~~gld~~~~~Vv~sG~~~Pg~dL~~~s~E~~~~~~~aDLVI~KGMGr~~~ 320 (360)
T d1xfia_ 241 LAANELPSINDITCTELTEILSQLKDENGQLLGVDTSKLLIANSGNDLPVIDLSRVSQELAYLSSDADLVIVEGMGRGIE 320 (360)
T ss_dssp EEEBSSCCTTBCBHHHHHHHHHHHC--CCEETTEECTTEEEEECCCCSSSCCTTSBCHHHHHHHTTCSEEEEESHHHHTT
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHCCHHHHHHHHCCCEEEECCCCCHHH
T ss_conf 99888752336249999999998751205765202135189657999887185768999999983699999828751132
Q ss_pred ---------------------------------------C
Q ss_conf ---------------------------------------9
Q 000711 482 ---------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------s 482 (1338)
.
T Consensus 321 tN~~a~f~c~~lkL~~vK~~~vA~~lGg~~~d~V~k~~~~ 360 (360)
T d1xfia_ 321 TNLYAQFKCDSLKIGMVKHLEVAEFLGGRLYDCVFKFNEV 360 (360)
T ss_dssp BSTTCCCSSEEEEEEECCCHHHHHHHTCCTTCEEEEEECC
T ss_pred CCCHHHCCCCEEHHHHHCCHHHHHHHCCCCCCEEEEECCC
T ss_conf 0101322788103334258999999499611279982479
|
| >d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FabD/lysophospholipase-like superfamily: FabD/lysophospholipase-like family: Patatin domain: Patatin species: Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]
Probab=100.00 E-value=0 Score=27087.90 Aligned_cols=1 Identities=0% Similarity=-1.091 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~v~iLsldGGG~rG~~~~~vL~~L~~~~~~~~~~~~~~~~d~fD~i~GTS~Gaiia~~la~g~~~~~~~~~~~~~~~ 80 (360)
T d1oxwa_ 1 LGEMVTVLSIDGGGIRGIIPATILEFLEGQLQEMDNNADARLADYFDVIGGTSTGGLLTAMISTPNENNRPFAAAKEIVP 80 (360)
T ss_dssp CCSCEEEEEECCCGGGGHHHHHHHHHHHHHHHHHTTCTTCCHHHHCSEEEECTHHHHHHHHHHSBCTTSSBSSCGGGHHH
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCEEEEECHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99700899989878999999999999997497234667997142099999963999999999869970318999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~ 160 (360)
T d1oxwa_ 81 FYFEHGPQIFNPSGQILGPKYDGKYLMQVLQEKLGETRVHQALTEVVISSFDIKTNKPVIFTKSNLANSPELDAKMYDIS 160 (360)
T ss_dssp HHHHHHHHHTCCCCCSSSCSCCCHHHHHHHHHHHTTCBGGGCSSEEEEEEEETTTTEEEEEESSSTTTCGGGCCBHHHHH
T ss_pred HHHHHCCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCHHHHHH
T ss_conf 99861210100123346764546999999999958701332167532673015888748973644356886322698861
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~ASsA~P~~F~p~~~~~~~~~~~~~~~~~~Dgg~~~~nnp~~~a~~e~~~l~~~~~~~~~~~~~~~~~~~~~s~gtg~~~ 240 (360)
T d1oxwa_ 161 YSTAAAPTYFPPHYFVTNTSNGDEYEFNLVDGAVATVADPALLSISVATRLAQKDPAFASIRSLNYKKMLLLSLGTGTTS 240 (360)
T ss_dssp HHHHCCTTTSCCEEEEEECTTSCEEEEEEEEGGGGTCSSCHHHHHHHHHHHTTTCGGGTTSTTCCGGGEEEEEECCCCBC
T ss_pred HHHHCCCCCCCCEEEECCCCCCCCEEEEECCCCHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 15513887778779732247787326774033542256726778999987624675322245677663155314666664
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~R~~~~~~~~~~~~lDd~s~~~l~~l~~ 320 (360)
T d1oxwa_ 241 EFDKTYTAKEAATWTAVHWMLVIQKMTDAASSYMTDYYLSTAFQALDSKNNYLRVQENALTGTTTEMDDASEANMELLVQ 320 (360)
T ss_dssp TTSSCCCHHHHTTCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTCGGGEEEECCCCBCGGGGCTTCCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 33333212442001167689999999876559999999999987447988479974886656541146899999999999
Q ss_pred ---------------------------------------C
Q ss_conf ---------------------------------------9
Q 000711 482 ---------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------s 482 (1338)
+
T Consensus 321 ~g~~~~~~~~~~~~~~~~~~~L~~~~~~L~~er~~r~~~~ 360 (360)
T d1oxwa_ 321 VGENLLKKPVSEDNPETYEEALKRFAKLLSDRKKLRANKA 360 (360)
T ss_dssp HHHHHHTSBSSSSCCCBHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999996330343066799999999999999998763059
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=100.00 E-value=0 Score=27088.64 Aligned_cols=1 Identities=0% Similarity=-0.293 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~~~r~~~l~~~~~~~L~~lGl~~~i~~~~~~~ 80 (360)
T d1pn0a1 1 TKYSESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLGLADKILSEANDM 80 (360)
T ss_dssp CCEEEEEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTTTCHHHHHTTCBCC
T ss_pred CCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCC
T ss_conf 99888788989989598999999998705332489868998689998868859998989999999869838999626776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~dg~~s 160 (360)
T d1pn0a1 81 STIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAY 160 (360)
T ss_dssp CEEEEEEECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSCEECSEEEEEEEECGGGTTCTTCC
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEEECCCC
T ss_conf 31599722667741112455543333344320253188999999999986165411356732563688638999605776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (360)
T d1pn0a1 161 PVTMTLRYMSEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSWVRRTLGFEMI 240 (360)
T ss_dssp CEEEEEEECCGGGSCCCTTCCCCCSSSCCCHHHHHHHHHTSCCCSTTCCTTCEEEEEEEEEEECCCTTCHHHHHHTCCCE
T ss_pred CEEEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCC
T ss_conf 35999998404566542331113787058866327765512456865302368888777631754332001011221110
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~l~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~ 320 (360)
T d1pn0a1 241 VTEKFSKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVLTGRAKRDILKTYEEERQPFAQALIDFDHQFSRL 320 (360)
T ss_dssp ECSCSEETTTEEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHHHHHTTCBCGGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHEEECCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 14444646928983675432050457887520889999999888876589738999999999999999999999999998
Q ss_pred ---------------------------------------C
Q ss_conf ---------------------------------------9
Q 000711 482 ---------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~G~~~~y~~ 360 (360)
T d1pn0a1 321 FSGRPAKDVADEMGVSMDVFKEAFVKGNEFASGTAINYDE 360 (360)
T ss_dssp HHSCBCSSTTCTTSBCHHHHHHHHHHHHHHHTTCCCCCCS
T ss_pred HCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHEEECCCCCC
T ss_conf 7799368888860335587899999865554330766688
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=100.00 E-value=0 Score=27084.58 Aligned_cols=1 Identities=0% Similarity=-0.227 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 t~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (360)
T d1kdga1 1 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFTDSNPFWWCKDI 80 (360)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCCSGGGTCCCCCGGGGGGTCCTTTCGGGGGGGGTCSCCTTBCTTB
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 95778998968899999999801879699998168987666543454422215764246763212211488755478655
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~G~~lGGsS~in~~~~~r~~~~D~~~~~gwp~~~~~l~py~~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g 160 (360)
T d1kdga1 81 TVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTNHAPYTSKLSSRLPSTDHPSTDGQRYLEQSFNVVSQLLKGQG 160 (360)
T ss_dssp SSCCBCSTTGGGGTSCCBCCCCCGGGGCGGGTCCGGGSCCHHHHHHHHHHSCCBSCCSTTSCCCSCHHHHHHHHHHHTTT
T ss_pred CCCCEEEECCHHCCCCCCCCCCCHHHHEECCCCCCCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 43101220111011333112244022100246653333013444333202332110037886344422589999999853
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~g~~~~~~~~G~R~s~~~~yl~~a~~r~nl~i~t~~~V~rI~~d~~ra~GV~~~~~~~~~~~~~ 240 (360)
T d1kdga1 161 YNQATINDNPNYKDHVFGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNGSQILGVQTNDPTLGPNGFI 240 (360)
T ss_dssp CEECCGGGSTTCCTTEEEECCBCEETTEECHHHHTHHHHHHTCTTEEEECSCCEEEEEEETTEEEEEEESCTTSSGGGEE
T ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEEEEECCEEEEEEEEECCCCCCEEE
T ss_conf 16787455788544321000120135322322211356664266300104867999997299899999985236762489
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~v~a~~eVILsAGai~SP~LLl~SGIGp~~~L~~~gi~p~v~~~l~~~~~~~~~p~g~~~~~~~~~~~v~~~~~~~~g~~ 320 (360)
T d1kdga1 241 PVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMTTIGSSPQSAVVDSNVKVFGTN 320 (360)
T ss_dssp EEEEEEEEEECSHHHHHHHHHHHTTBSCHHHHHHHHTSHHHHHHSCCGGGCBCCCTTTTCBCSCTTTCSBCTTCBBTTCS
T ss_pred EEEECCEEEEECHHHHCHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCEEEECCCCCCCCEECCCCEEECCC
T ss_conf 99979999993656747299986589955666775328643445546453133663200017897562777531463368
Q ss_pred ---------------------------------------C
Q ss_conf ---------------------------------------9
Q 000711 482 ---------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------s 482 (1338)
-
T Consensus 321 ~l~~~~a~~~p~~~~~~~~~~~~~~ae~aa~~il~~~~~~ 360 (360)
T d1kdga1 321 NLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKILALAGGP 360 (360)
T ss_dssp SEEECSGGGCSSCCSSCSHHHHHHHHHHHHHHHHHSTTCC
T ss_pred CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 8368854036545789977556588999998875204899
|
| >d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: 2,6-dihydropseudooxynicotine hydrolase-like domain: 2,6-dihydropseudooxynicotine hydrolase species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=100.00 E-value=0 Score=27086.54 Aligned_cols=1 Identities=0% Similarity=-0.426 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~W~~~w~~~a~~~~~~a~~~~~~g~~~~A~~~~~~A~~~~~~a~~~~~ 80 (360)
T d2jbwa1 1 KPEDEMDNWGRLILDGVSYSDMVGARDRPKEITWFDYWMSLANEYEQEAERKVALGHDLSAGELLMSAALCAQYAQFLWF 80 (360)
T ss_dssp CHHHHHCCHHHHHHHTCCHHHHHHHHTCCTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 92658888776761797589998630689942799999999999999999999769987899999999999997356557
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~ip~dg~~l~g~l~~P~~~~~~P~Vi~~hG~~~~~e~~~~~~~~l~~~G~~ 160 (360)
T d2jbwa1 81 DERRQKGQARKVELYQKAAPLLSPPAERHELVVDGIPMPVYVRIPEGPGPHPAVIMLGGLESTKEESFQMENLVLDRGMA 160 (360)
T ss_dssp STHHHHHHHHHHHHHHHHGGGSSSCEEEEEEEETTEEEEEEEECCSSSCCEEEEEEECCSSCCTTTTHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 93677899999999999986479873996357677666239993699999529999379876477899999999966998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 vl~~D~~G~G~s~~~~~~~~~~~~~~~~v~d~l~~~~~vd~~rI~l~G~S~GG~~Al~~A~~~pri~a~V~~~~~~~~~~ 240 (360)
T d2jbwa1 161 TATFDGPGQGEMFEYKRIAGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEPRLAACISWGGFSDLDY 240 (360)
T ss_dssp EEEECCTTSGGGTTTCCSCSCHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCTTCCEEEEESCCSCSTT
T ss_pred EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEHHHHCCCHHHHHHHHCCCCCCEEEEECCCCCHHH
T ss_conf 99971642223576555656699999999999996600155553423331050999987515987554999746555777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~vp~~~~~~l~~~~~~~~~~l~~~~~g 320 (360)
T d2jbwa1 241 WDLETPLTKESWKYVSKVDTLEEARLHVHAALETRDVLSQIACPTYILHGVHDEVPLSFVDTVLELVPAEHLNLVVEKDG 320 (360)
T ss_dssp GGGSCHHHHHHHHHHTTCSSHHHHHHHHHHHTCCTTTGGGCCSCEEEEEETTSSSCTHHHHHHHHHSCGGGEEEEEETTC
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 75433456677777506873577889877406645467527999899972999928999999999657998599997999
Q ss_pred ---------------------------------------C
Q ss_conf ---------------------------------------9
Q 000711 482 ---------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------s 482 (1338)
-
T Consensus 321 ~H~~~~~~~~~~~~i~dWl~~~L~~g~~~apt~~~~p~~~ 360 (360)
T d2jbwa1 321 DHCCHNLGIRPRLEMADWLYDVLVAGKKVAPTMKGWPLEH 360 (360)
T ss_dssp CGGGGGGTTHHHHHHHHHHHHHHTSSCCCCCCEESCSCC-
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 9677767579999999999998314897899877788889
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=100.00 E-value=0 Score=27088.48 Aligned_cols=1 Identities=0% Similarity=-0.194 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~ 80 (360)
T d1k32a3 1 SIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK 80 (360)
T ss_dssp ECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred CCCHHHCCCCCCCCCCEEEEEECCEEEEEECCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEE
T ss_conf 98601005146889999999989969999899994899169998888999899999999992899899999899994887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~ 160 (360)
T d1k32a3 81 FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA 160 (360)
T ss_dssp CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEE
T ss_pred EECCCCEEEEEEECCCCCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHCCCEEEEEEECCCCCCCEEECCCCC
T ss_conf 50897127741211454321000111110000012221000000135520230121322566521233121100025654
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 240 (360)
T d1k32a3 161 IHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSM 240 (360)
T ss_dssp EEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGG
T ss_pred EEEECCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCEECCCCCCCCEEECCCCCEEEEECCCCCCCCCEECCCCC
T ss_conf 26630455713530354322110012577999999959985575333544023203641179852469601206877767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~v~~~ 320 (360)
T d1k32a3 241 TSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDL 320 (360)
T ss_dssp SCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEEEEEE
T ss_pred CCCCCCEEECCCCCCEEECCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEE
T ss_conf 15531136526654001012476752675413898569999735997069996489987999979997498864886879
Q ss_pred ---------------------------------------C
Q ss_conf ---------------------------------------9
Q 000711 482 ---------------------------------------S 482 (1338)
Q Consensus 482 ---------------------------------------s 482 (1338)
.
T Consensus 321 ~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~~~~ 360 (360)
T d1k32a3 321 RLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPLV 360 (360)
T ss_dssp EECTTSCEEEEEETTSCEEEEESSCTTSCEECCCCSSCEE
T ss_pred EECCCCCEEEEEECCCEEEEEECCCCCCCEEEEECCCCCC
T ss_conf 9999898999997899499999999985459984162259
|
| >d4bcla_ b.75.1.1 (A:) Bacteriochlorophyll A protein {Prosthecochloris aestuarii, strain 2k [TaxId: 1102]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Bacteriochlorophyll A protein superfamily: Bacteriochlorophyll A protein family: Bacteriochlorophyll A protein domain: Bacteriochlorophyll A protein species: Prosthecochloris aestuarii, strain 2k [TaxId: 1102]
Probab=100.00 E-value=0 Score=27022.10 Aligned_cols=1 Identities=0% Similarity=-0.294 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 tTtA~~Dyeiileggssswg~vk~rakvNVP~a~pllp~dc~iKi~~Kpl~~~kgvVR~t~~ieSiVDstknkl~vE~DI 80 (359)
T d4bcla_ 1 TTTAHSDYEIILEGGSSSWGQVKGRAKVNVPAAIPLLPTDCNIRIDAKPLDAQKGVVRFTTKIESVVDSVKNTLNVEVDI 80 (359)
T ss_dssp CCEEEEEEEEEECCTTCCCEEEEEEEEECSCCCCSSCCEEEEEEEEEEECC---CCEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEHHHHHHHCCEEEEEEEE
T ss_conf 94212334789707876531023567603898777766666227620205776786999864045776401404899862
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ANEtkdrRiavGEG~vsVGdFSH~FsfEGsVvnl~YyRsdavrrNvpnp~ymqGrqfHDi~mkVPldn~dlIdTWe~~~~ 160 (359)
T d4bcla_ 81 ANETKDRRIAVGEGSLSVGDFSHSFSFEGSVVNMYYYRSDAVRRNIPNPIYMQGRQFHDILMKVPLDNNDLVDTWEGFQQ 160 (359)
T ss_dssp EESSSSEEEEEEEEEEEETTEEEEEEEEEEEEEEESCCCHHHHTTCSSCCCCCEEEEEEEEEEEECCSHHHHHHHHHHHH
T ss_pred CCCCCCCEEEECCCEEEECCCEEEEEEEEEEEEEEEECCHHHHHCCCCCEEECCCCHHHEEEECCCCCHHHHHHHHHHHH
T ss_conf 35787640673243387602224578620488999950146763599865552731100478558995568899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 a~~~~~~nF~dwIrdfWfIGPa~~al~egGQ~is~I~v~~~~~e~g~k~pvgv~rwrfsh~gsgivdsisrw~elfp~d~ 240 (359)
T d4bcla_ 161 SISGGGANFGDWIREFWFIGPAFAAINEGGQRISPIVVNSSNVEGGEKGPVGVTRWKFSHAGSGVVDSISRWTELFPVEQ 240 (359)
T ss_dssp HC---CCSHHHHHHHHHSTTTHHHHHHHTTEEECCCEEEEEEEECC---CEEEEEEEEEEEESSCCHHHHTTTTTCCGGG
T ss_pred HHHCCCCCHHHHHHHHEEECHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCHHH
T ss_conf 87538974566556514522778888752730330799741025688787553267863787510226777887477634
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 l~~pa~ieg~frsdsqgievkvdg~lpgvsvdaggg~rrilnhpliplvHHGmvgk~n~f~vd~q~kv~lPkGyK~ryaA 320 (359)
T d4bcla_ 241 LNKPASIEGGFRSDSQGIEVKVDGNLPGVSRDAGGGLRRILNHPLIPLVHHGMVGKFNDFTVDTQLKIVLPKGYKIRYAA 320 (359)
T ss_dssp CSSCEEEEEEEEECSSCEEEEEEEEETTSEEEEETTEEEECCCCHHHHHHHTTTTTSSCCEEEEEEEEECCTTCEEEEEE
T ss_pred CCCCCEECCCCCCCCCCEEEEEECCCCCEEECCCCCCHHHHCCCCCCEEECCCEECCCCCCEEEEEEEECCCCCEEEECC
T ss_conf 39850441454456774489982456860442788722441688620031230312577613368999726871676516
Q ss_pred --------------------------------------C
Q ss_conf --------------------------------------9
Q 000711 482 --------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------s 482 (1338)
-
T Consensus 321 pqf~sqn~eey~wsGG~Ya~W~EhvCKGg~gqF~ilyaq 359 (359)
T d4bcla_ 321 PQFRSQNLEEYRWSGGAYARWVEHVCKGGTGQFEVLYAQ 359 (359)
T ss_dssp SCCSEEETTEEEEESHHHHHHHHHHHTTCCCCCEEEEEC
T ss_pred CHHHHCCHHHEEECCCHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 301001254368637147888875414887754788429
|
| >d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Glycolate oxidase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=100.00 E-value=0 Score=27017.92 Aligned_cols=1 Identities=0% Similarity=-0.992 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~i~d~~~~A~~~lp~~~~~y~~gga~~~~t~~~N~~~Fd~i~l~pr~L~d~~~iDlst~~lG~~~~~P~~IspMtg 80 (359)
T d1goxa_ 1 MEITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAM 80 (359)
T ss_dssp CCCCSTTHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGEEECCCCSCCCSCCBCCEEETTEEESSSEEECCCSC
T ss_pred CCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCEECCCCCCCCCCCCCEEECCCCCCCCEEECCCCC
T ss_conf 95467999999999868888889870567741999999999984626331246887798755678835578615265323
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 g~~~~~~~e~~lA~aA~~~gi~~~~~s~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~vd~~~ 160 (359)
T d1goxa_ 81 QKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 160 (359)
T ss_dssp GGGTCTTHHHHHHHHHHHTTCCEEECTTCSSCHHHHHTTCCCCEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCSS
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
T ss_conf 46677864787656688629722334554565023677469984112222106778999999888754033442224102
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~kg~~~~~da~~ 240 (359)
T d1goxa_ 161 LGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARL 240 (359)
T ss_dssp CCCCHHHHHTTCCCCTTCCCGGGSSSCCC---------HHHHHHHTBCTTCCHHHHHHHHHHCCSCEEEECCCSHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHH
T ss_conf 22344412442357853314566553036676556411799998513788999999999861566532200244688899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 a~~~g~~~~~vsnhggr~ld~~~~~~~~l~~i~~~~~~~~~iiadGGIR~G~Di~KALaLGAd~vgigrp~L~~la~~g~ 320 (359)
T d1goxa_ 241 AVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGE 320 (359)
T ss_dssp HHHTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHHHH
T ss_pred HHHCCCCCEECCCCCCCCCCCCCCHHHHCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCH
T ss_conf 98706653220321110000000025445566503478621465057575778999998489989876899999984349
Q ss_pred --------------------------------------C
Q ss_conf --------------------------------------9
Q 000711 482 --------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------s 482 (1338)
-
T Consensus 321 ~gv~~~i~~l~~EL~~~M~l~G~~~i~~L~~~~l~~~~~ 359 (359)
T d1goxa_ 321 AGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWD 359 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSBTTTCCGGGEEETTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHCCCCCC
T ss_conf 999999999999999999985899978959954657899
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=100.00 E-value=0 Score=27014.88 Aligned_cols=1 Identities=0% Similarity=-0.992 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 m~~~~~l~M~gG~G~~SYa~NS~~Q~~~i~~~kp~leeai~~~~~~~~~~~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~ 80 (359)
T d1m6ex_ 1 MDVRQVLHMKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGCSSGPNALFAVTELIKTVEEL 80 (359)
T ss_dssp CCCHHHHCCCCCTTSTTTTSSCHHHHHHHHHTHHHHHHHHHHHHSSSSSSSEECCEEESCCSSTTTTTGGGTTHHHHHHH
T ss_pred CCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 98417603379998533999999999999998999999999624677899865999727899965799999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~ 160 (359)
T d1m6ex_ 81 RKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIE 160 (359)
T ss_dssp HHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCC
T ss_pred HHHCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHCCCCCCEEEEEEHHHHHHHHCCCCCCC
T ss_conf 98638999972899847888526799998463012678875898657722320178874577642003344303885445
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~al~dmv~eG 240 (359)
T d1m6ex_ 161 SNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQLLAMALNQMVSEG 240 (359)
T ss_dssp CCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTT
T ss_pred CCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 78886797479998999999999999999999999998357857999985567898888863518999999999999859
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 lI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~e~~~~~~~~~~~~~~~~~d~~~~~~~~a~~~RA~~e~~l~~hf 320 (359)
T d1m6ex_ 241 LIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCTKDGDGGGSVEEEGYNVARCMRAVAEPLLLDHF 320 (359)
T ss_dssp CSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEEEEETTCCSSCTTCCSSTTTTTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 98899997316842668889999885148975655447654154201223444565889999999999999999999985
Q ss_pred --------------------------------------C
Q ss_conf --------------------------------------9
Q 000711 482 --------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------s 482 (1338)
-
T Consensus 321 g~~i~D~lF~r~~~~v~~~~~~~~~~~~~~~~sL~rK~~ 359 (359)
T d1m6ex_ 321 GEAIIEDVFHRYKLLIIERMSKEKTKFINVIVSLIRKSD 359 (359)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSCCEEEEEEEEEEBCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCC
T ss_conf 828899999999999996076549953999999996689
|
| >d1yvra1 a.118.25.1 (A:5-363) 60-kda SS-aARo ribonucleoprotein {African clawed frog (Xenopus laevis) [TaxId: 8355]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TROVE domain-like family: TROVE domain-like domain: 60-kda SS-aARo ribonucleoprotein species: African clawed frog (Xenopus laevis) [TaxId: 8355]
Probab=100.00 E-value=0 Score=27013.42 Aligned_cols=1 Identities=0% Similarity=-1.856 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~q~~p~~~~qv~N~aGg~a~~~~~~~~L~rfl~~Gt~~~tyY~~~~~l~~e~~~~l~~l~~~~~~~~~v~~l~~~~~~g 80 (359)
T d1yvra1 1 MDQTQPLNEKQVPNSEGCYVWQVSDMNRLRRFLCFGSEGGTYYIEEKKLGQENAEALLRLIEDGKGCEVVQEIKTFSQEG 80 (359)
T ss_dssp CCTTSCSSTTCEECTTSCEEEECCHHHHHHHHHHHCCTTCCSSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 98777698211556667720369989999999961368986745826526889999999997278278999999998437
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~r~~p~l~aLal~a~~~d~~~r~~a~~~~~~v~r~~~~L~~fv~~~~~~~~~~~~~~~gr~lrkav~~Wy~~~~~~~L 160 (359)
T d1yvra1 81 RAAKQEPTLFALAVCSQCSDIKTKQAAFRAVPEVCRIPTHLFTFIQFKKDLKEGMKCGMWGRALRKAVSDWYNTKDALNL 160 (359)
T ss_dssp CSSCSHHHHHHHHHHHTSSCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHTSCHHHH
T ss_pred CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHH
T ss_conf 88784269999999986898889999999999996682189999999998536768786258999999999864998999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 A~~~~Ky~~r~gwShkDlLrl~Hpkp~~~~~~~l~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 240 (359)
T d1yvra1 161 AMAVTKYKQRNGWSHKDLLRLSHIKPANEGLTMVAKYVSKGWKEVQEAYKEKELSPETEKVLKYLEATERVKRTKDELEI 240 (359)
T ss_dssp HHHHTSCCCSSSCCHHHHHHHTTCCCSSHHHHHHHHHHHTCHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 99998517778997999999808999847899999999638511111134433660379999999999998715878889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~lI~~~~Lt~E~~p~~~~~~~~vWeaLi~~mp~~ALLRNL~~l~~~gvl~~~~~~~~~V~~rL~D~~~l~~arihP~~~ 320 (359)
T d1yvra1 241 IHLIDEYRLVREHLLTIHLKSKEIWKSLLQDMPLTALLRNLGKMTADSVLAPASSEVSSVCERLTNEKLLKKARIHPFHI 320 (359)
T ss_dssp HHHHHHHCCCGGGSCTTGGGCHHHHHHHHHTCCHHHHHHHHHHHHHTTTTCTTCHHHHHHHHHHTCHHHHHHTTCCHHHH
T ss_pred HHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHCCCCHHHH
T ss_conf 99999728989870144316899999998718899999978877452567877278999999847999999725582999
Q ss_pred --------------------------------------C
Q ss_conf --------------------------------------9
Q 000711 482 --------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------s 482 (1338)
-
T Consensus 321 L~A~~~Y~~g~~~~~~~~w~p~~~i~~AL~~A~~~sf~~ 359 (359)
T d1yvra1 321 LVALETYKKGHGNRGKLRWIPDTSIVEALDNAFYKSFKL 359 (359)
T ss_dssp HHHHHHHHHCC-----CCCCCCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 999999984478666677788599999999999987079
|
| >d1x74a1 c.123.1.1 (A:2-360) 2-methylacyl-CoA racemase Mcr {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-transferase family III (CaiB/BaiF) superfamily: CoA-transferase family III (CaiB/BaiF) family: CoA-transferase family III (CaiB/BaiF) domain: 2-methylacyl-CoA racemase Mcr species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=0 Score=27013.23 Aligned_cols=1 Identities=0% Similarity=0.305 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~gPL~girVld~~~~~agp~~~~~lad~GA~VikvE~p~~~~~~~~~~~nr~K~si~lDl~~~~g~~~~~~Lv~~aDv~i 80 (359)
T d1x74a1 1 AGPLSGLRVVELAGIGPGPHAAMILGDLGADVVRIDRPSSVDGISRDAMLRNRRIVTADLKSDQGLELALKLIAKADVLI 80 (359)
T ss_dssp CCTTTTCEEEEECCSTHHHHHHHHHHHTTCEEEEEECC-----CCCCGGGCSCEEEECCTTSHHHHHHHHHHHTTCSEEE
T ss_pred CCCCCCCEEEECCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCEEE
T ss_conf 98999989998278308999999999839979998999999813456651898599972859899999999986689988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~n~~pg~~~~lgl~~~~l~~~nP~lI~~sisgfG~~Gp~~~~~~~D~~~qA~sG~~~~~g~~~~~P~~~~~~~~d~~~g~ 160 (359)
T d1x74a1 81 EGYRPGVTERLGLGPEECAKVNDRLIYARMTGWGQTGPRSQQAGHDINYISLNGILHAIGRGDERPVPPLNLVGDFGGGS 160 (359)
T ss_dssp ECSCTTHHHHHTCSHHHHHHHCTTCEEEEEESSCSSSTTTTSCCCHHHHHHHTSTGGGSSCTTSCCCCCTTCCCCCCTTH
T ss_pred ECCCCCCHHHCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEHHHHHHHH
T ss_conf 66888736541898788776347816999968988898666565654455556622212789999878732189876799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 l~aa~ailaAL~~R~~tG~Gq~VdvSl~ea~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~y~t~DG~~i~~~~~~ 240 (359)
T d1x74a1 161 MFLLVGILAALWERQSSGKGQVVDAAMVDGSSVLIQMMWAMRATGMWTDTRGANMLDGGAPYYDTYECADGRYVAVGAIE 240 (359)
T ss_dssp HHHHHHHHHHHHHHHHHSCCEEEEEEHHHHHHHHTHHHHHHHHTTSCCSSTTCSTTTTCSTTEEEEECTTSCEEEEECCS
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEEEECC
T ss_conf 99999999999999856997486311167788877799999980798865688867666765476254788368996277
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~l~~d~~~~~~~~~~~~~~el~~~l~~~~~~~t~~e~~~~l~~~gvp~~pV~~~~ev~~dpq~~~r~~~~~ 320 (359)
T d1x74a1 241 PQFYAAMLAGLGLDAAELPPQNDRARWPELRALLTEAFASHDRDHWGAVFANSDACVTPVLAFGEVHNEPHIIERNTFYE 320 (359)
T ss_dssp HHHHHHHHHHHTCCGGGSCCTTCGGGHHHHHHHHHHHHHTSCHHHHHHHTSSSSSCEEECCCHHHHTTCHHHHHTTCEEE
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCHHHHHHCCEEE
T ss_conf 78777654121201344321101444688899998776666489999999767970895289999874978897199998
Q ss_pred --------------------------------------C
Q ss_conf --------------------------------------9
Q 000711 482 --------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~~~~~p~~s~tp~~~~~~P~lGeht~eIL~e~lG 359 (359)
T d1x74a1 321 ANGGWQPMPAPRFSRTASSQPRPPAATIDIEAVLTDWDG 359 (359)
T ss_dssp CSSSEEECCSSEESSSCCCCCCCCCCCCCHHHHHHHHTC
T ss_pred ECCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC
T ss_conf 689114578878899998899999999789999997279
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=27012.13 Aligned_cols=1 Identities=0% Similarity=-0.426 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~l~~~~~~~~~r~~d~~fa~~~~~~~~~~~~l~~al~s~~~~~Gh~cl~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (359)
T d1w36d1 1 KLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNW 80 (359)
T ss_dssp CTHHHHHHHHHTTSSCHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHTTCSEEETTTTTTGGGGSSSCCCCSSCCTTCSTH
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCCCCHHHCCCCCHHHH
T ss_conf 96899999998183568999999998558985899999999999839997627999751200244430222155558999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~l~~~~~v~~~~~~~p~vl~~~~lyl~~~~~~E~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~A~~~a 160 (359)
T d1w36d1 81 EECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVA 160 (359)
T ss_dssp HHHHHHSTTEESSSSCCSEEECSSEEEEHHHHHHHHHHHHHHTSCCBCCCCCHHHHHHHHHTTCCCTTSCCHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCCEEEECCEEEHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 99987276656777888658778884047899999999999998637799983789999997465765663899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 l~~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~ApTgkAA~~L~e~~~~~~~~~~~~~~~~~~~~~~~~t~~ 240 (359)
T d1w36d1 161 LTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLH 240 (359)
T ss_dssp HTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCCCCSCSCCCBTTT
T ss_pred HCCCEEEEECCCCCCCEEHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 70885999768988752169999999999875269828984375999999998887777645810445542013455789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~ll~~~~~~~~~~~~~~~~l~~d~lIIDEaSmv~~~l~~~ll~~~~~~~~lILvGD~~QLppV~~G~vl~dl~~~~~~~~ 320 (359)
T d1w36d1 241 RLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGF 320 (359)
T ss_dssp SCC-----------CTTSCCSCSEEEECSGGGCBHHHHHHHHHTCCTTCEEEEEECTTSGGGTSTTBCHHHHGGGGTTCC
T ss_pred HHHHHHHCCHHHHHHHHCCCCCCEEEEHHHHCCCHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCHHHHHHHHHHCCC
T ss_conf 98763100067777543666541346533214489999999987259998999777221668788818999999773477
Q ss_pred --------------------------------------C
Q ss_conf --------------------------------------9
Q 000711 482 --------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~~l~r~~~~~~~~~~~~~~~~i~d~l~~L~knyR 359 (359)
T d1w36d1 321 TAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYR 359 (359)
T ss_dssp CHHHHHHHHHHSSSCCCCCSTTTTHHHHTTEEECCCCCC
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCHHCCHHHCCCCCCC
T ss_conf 899999999985410001333334202172112545789
|
| >d2hrca1 c.92.1.1 (A:65-423) Ferrochelatase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Chelatase-like superfamily: Chelatase family: Ferrochelatase domain: Ferrochelatase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27011.12 Aligned_cols=1 Identities=0% Similarity=-1.024 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~K~K~aVLl~n~G~P~s~~dv~~yL~~~~~d~~vi~~P~~~~l~~~i~~~r~~~~~~~Y~~igg~SPL~~~t~~q~~~l~ 80 (359)
T d2hrca1 1 RKPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPIQNKLAPFIAKRLTPKIQEQYRRIGGGSPIKIWTSKQGEGMV 80 (359)
T ss_dssp CCCCEEEEEEECCCCSSGGGHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 99966999974799999789999999974799721163488888887411008899999863899922999999999988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~L~~~~~~~~~~~v~~amry~~P~i~~~l~~l~~~G~~~iv~lPLyPqyS~sTtgs~~~~~~k~l~~~~~~~~~~~~~i 160 (359)
T d2hrca1 81 KLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTI 160 (359)
T ss_dssp HHHHHHCGGGCSEEEEEEESSSSSBHHHHHHHHHHTTCSEEEEEESCSSCCTTTHHHHHHHHHHHHHHHTSCCSSEEEEE
T ss_pred HHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 89876347665437998514355305889999985587440010155423412003226899999998541013566434
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~p~yi~a~a~~i~~~~~~~~~~~~~~~~llfS~HglP~~~~~~gdpY~~q~~~t~~~i~~~l~~~~~~~~~fQSr 240 (359)
T d2hrca1 161 DRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYCNPYRLVWQSK 240 (359)
T ss_dssp CCCTTCHHHHHHHHHHHHHHHTTSCGGGTTTCEEEEEEECCBHHHHTTTCSHHHHHHHHHHHHHHHTTTCSCEEEEEECC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHEEEECC
T ss_conf 67788188999999999999972553357772699961123131454189517889999999998734430333244447
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~g~~~Wl~P~~~~~l~~l~~~G~k~v~v~p~gFvsD~lETl~Eidie~~e~~~~~~G~~~~~~vp~lN~~p~fi~~la~l 320 (359)
T d2hrca1 241 VGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADL 320 (359)
T ss_dssp CSSSCBSSSBHHHHHHHHHHTTCCEEEEEECSCSSCCHHHHTTTTTHHHHHSCSSSCCSEEEECCCSTTCHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH
T ss_conf 79976679858999999997499739998986566534679988899999999975996489827999998999999999
Q ss_pred --------------------------------------C
Q ss_conf --------------------------------------9
Q 000711 482 --------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------s 482 (1338)
-
T Consensus 321 v~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 359 (359)
T d2hrca1 321 VHSHIQSNELCSKQLTLSCPLCVNPVCRETKSFFTSQQL 359 (359)
T ss_dssp HHHHHHHTCSSCGGGGSCCTTCCCHHHHHHHHHHHTCCC
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCC
T ss_conf 999864788777556888999887103888850053779
|
| >d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectin lyase domain: Pectin lyase species: Aspergillus niger, type A [TaxId: 5061]
Probab=100.00 E-value=0 Score=27008.74 Aligned_cols=1 Identities=0% Similarity=-1.788 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~v~~~a~Gfa~~ttGG~~g~~~~Vtt~~eL~~al~~~~PriI~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (359)
T d1idka_ 1 VGVSGSAEGFAKGVTGGGSATPVYPDTIDELVSYLGDDEARVIVLTKTFDFTDSEGTTTGTGCAPWGTASACQVAIDQDD 80 (359)
T ss_dssp CCCCSCCCGGGTTCCTTTTCCCBCCCSHHHHHHHHHSSSCEEEEECSEEECTTTTCEEEEEEECTTCSSTTBCEEECGGG
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCEEEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 97565574144578788897379938999999986289974999863480356644112333234565431101114443
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~v~sn~TI~G~g~~~~i~g~g~~i~~~~~NVIiRNl~i~~~~~~~~~~~DaI~i~~ 160 (359)
T d1idka_ 81 WCENYEPDAPSVSVEYYNAGTLGITVTSNKSLIGEGSSGAIKGKGLRIVSGAENIIIQNIAVTDINPKYVWGGDAITLDD 160 (359)
T ss_dssp HHHHHSCCSCEEEEEEESSTTSCEEECSSEEEEECTTTCEEESCCEEECTTCEEEEEESCEEEEECTTEETSCCSEEECS
T ss_pred CCCCCCCCCCCCEEEEECCCCCCEEECCCCEEEECCCCEEEECCCEEEEECCCEEEEECCEEECCCCCCCCCCCEEEEEC
T ss_conf 22235556763014532167770572799608861588499657468874682199979599568777787887588517
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 s~nVwIDH~s~s~~~d~~~~~~~~~s~~vTis~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vT~hhN~f~~~~~R~P~~ 240 (359)
T d1idka_ 161 CDLVWIDHVTTARIGRQHYVLGTSADNRVSLTNNYIDGVSDYSATCDGYHYWAIYLDGDADLVTMKGNYIYHTSGRSPKV 240 (359)
T ss_dssp CEEEEEESCEEEEESSCSEEECCCTTCEEEEESCEEECBCSCBTTSSSBBSCCEEECCSSCEEEEESCEEESBCSCTTEE
T ss_pred CCCEEEEEEEECCCCCCCEEEECCCCCCEEEECEEEECCCCCCCCCCCCCCCCCEECCCCCCEEEEEEEECCCCCCCCEE
T ss_conf 86489980060357788635610578726620406523312234566556687332289862899924981577888401
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 r~g~~~hv~NN~~~n~~~~~i~~~~~~~i~~e~N~F~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~ 320 (359)
T d1idka_ 241 QDNTLLHAVNNYWYDISGHAFEIGEGGYVLAEGNVFQNVDTVLETYEGEAFTVPSSTAGEVCSTYLGRDCVINGFGSSGT 320 (359)
T ss_dssp CTTCEEEEESCEEEEEEEEEEEECTTCEEEEESCEEEEEEEEEEEESSEEECCSSTTGGGGGHHHHSSCCCCCEEESSCC
T ss_pred CCCCEEEEECCEEECCCCEEEECCCCEEEEEECEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 34305999876997762557835775158996618867767754467723733567777421244476443113354664
Q ss_pred --------------------------------------C
Q ss_conf --------------------------------------9
Q 000711 482 --------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~a~~v~~~V~~nAG~Gkl 359 (359)
T d1idka_ 321 FSEDSTSFLSDFEGKNIASASAYTSVASRVVANAGQGNL 359 (359)
T ss_dssp CCCBCCTTGGGGTTSCCCCCCCGGGHHHHHHHHCSTTCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 366776521355665545768878977766434898879
|
| >d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectin lyase domain: Pectin lyase species: Aspergillus niger, type B [TaxId: 5061]
Probab=100.00 E-value=0 Score=27008.33 Aligned_cols=1 Identities=0% Similarity=0.205 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 a~v~g~a~Gfa~~ttGG~~g~v~~Vtt~~eL~~al~~~~PriI~~~gtid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (359)
T d1qcxa_ 1 AGVVGAAEGFAHGVTGGGSASPVYPTTTDELVSYLGDNEPRVIILDQTFDFTGTEGTETTTGCAPWGTASQCQVAINLHS 80 (359)
T ss_dssp CCCCSCCCGGGTTCCTTTTCCCBCCCSHHHHHHHHHSSSCEEEEECSEEECTTTTCEEEEEEECTTCSSTTBCEEECGGG
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCEEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98776676055688788897489938999999986289974999886681344556322334245554322222325332
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~v~sn~TI~G~g~~~~i~g~g~~~~~~~~NVIirnl~ir~~~~~~~~~~Dai~i~~ 160 (359)
T d1qcxa_ 81 WCDNYQASAPKVSVTYDKAGILPITVNSNKSIVGQGTKGVIKGKGLRVVSGAKNVIIQNIAVTDINPKYVWGGDAITVDD 160 (359)
T ss_dssp HHHHHCTTSCEEEEEEEGGGTSCEECCSSEEEEECTTCCEEESCCEEEETTCCCEEEESCEEEEECTTEETSCCSEEEES
T ss_pred CCCCCCCCCCCEEEEEECCCCCEEEECCCCEEEECCCCEEEECCCEEEEECCCCEEEECEEEECCCCCCCCCCCEEEEEC
T ss_conf 22344556762035530267650784798749851588189746568886784489969098558777787897478617
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 s~nvwIDH~s~s~~~d~~~~~~~~~s~~vTvs~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~vT~hhN~~~~~~~R~P~~ 240 (359)
T d1qcxa_ 161 SDLVWIDHVTTARIGRQHIVLGTSADNRVTISYSLIDGRSDYSATCNGHHYWGVYLDGSNDMVTLKGNYFYNLSGRMPKV 240 (359)
T ss_dssp CCCEEEESCEEEEESSCSEEECSSCCEEEEEESCEEECBCSSBTTSSSBBSCCEEECCSSEEEEEESCEEESBCSCTTEE
T ss_pred CCCEEEEEEECCCCCCCCEEEECCCCCCEEEECCEECCCCCCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCCCCC
T ss_conf 88789982564456887537602677756865307616754101256567787400279861999925615887778606
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 r~g~~~hv~NN~~~n~~~~~~~~~~~~~v~~e~N~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~ 320 (359)
T d1qcxa_ 241 QGNTLLHAVNNLFHNFDGHAFEIGTGGYVLAEGNVFQDVNVVVETPISGQLFSSPDANTNQQCASVFGRSCQLNAFGNSG 320 (359)
T ss_dssp CSSEEEEEESCEEEEEEEEEEEECTTEEEEEESCEEEEEEEEECSSCSSEEECCCSHHHHGGGHHHHSSCCCCCEEESCC
T ss_pred CCCCEEEEEEEEEECCCCEEEECCCCEEEEEEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 07844899941796767778824775189998158889887665564320304687554531245556400011335676
Q ss_pred --------------------------------------C
Q ss_conf --------------------------------------9
Q 000711 482 --------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------s 482 (1338)
=
T Consensus 321 ~~~~~~~~~~~~~~~~~~~t~~~a~~v~~~V~~~AG~GK 359 (359)
T d1qcxa_ 321 SMSGSDTSIISKFAGKTIAAAHPPGAIAQWTMKNAGQGK 359 (359)
T ss_dssp CCCCBCGGGGGGGTTSCCCCCCCGGGHHHHHHHHSSTTC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 314688530046677663576899999987775289999
|
| >d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Alcohol dehydrogenase TM0920 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=27011.28 Aligned_cols=1 Identities=0% Similarity=-1.423 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~f~f~~P~~i~fG~g~l~~l~~~~~~~g~k~liV~~~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~~p~~~~v~~~~~ 80 (359)
T d1o2da_ 1 VWEFYMPTDVFFGEKILEKRGNIIDLLGKRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVE 80 (359)
T ss_dssp CCCCCCCCEEEESTTHHHHHGGGGGGTCSEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHH
T ss_pred CEECCCCCEEEEECCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 93737999899948999999999997599589998586888740999999999876984999757468979899987642
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~D~IIavGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gtgse~t~~avi~~~~~~~k~~ 160 (359)
T d1o2da_ 81 RYRNDSFDFVVGLGGGSPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPTTAGTGSEVTPYSILTDPEGNKRGC 160 (359)
T ss_dssp HHTTSCCSEEEEEESHHHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEECSSCCCGGGCCEEEEECTTSCEEEE
T ss_pred HCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCEEEECCCCCCCHHCCCHHHHHHHHHCCCCC
T ss_conf 00135775688516642001899999998489971331167534457787588426455422114214545675500102
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~P~~~i~Dp~l~~~~P~~~~~~~~~Dal~h~~E~~~s~~~~~~~~~~a~~ai~~~~~~l~~~~~~~~~a~~~l~~as 240 (359)
T d1o2da_ 161 TLMFPVYAFLDPRYTYSMSDELTLSTGVDALSHAVEGYLSRKSTPPSDALAIEAMKIIHRNLPKAIEGNREARKKMFVAS 240 (359)
T ss_dssp ECCCCSEEEECGGGGGGCCHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 35778768860754058534445665317999988876400255156688999999999876532104699999877899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~g~a~~~~g~g~~Hai~h~l~~~~~i~HG~~~ai~lp~v~~~~~~~~~ek~~~ia~~lg~~~~~~~~~lglp~~lg~~ 320 (359)
T d1o2da_ 241 CLAGMVIAQTGTTLAHALGYPLTTEKGIKHGKATGMVLPFVMEVMKEEIPEKVDTVNHIFGGSLLKFLKELGLYEKVAVS 320 (359)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTTCHHHHHHHTTCCCCCCCC
T ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99987551678644410245213303877412578879999999998759999999999889999999985991005979
Q ss_pred --------------------------------------C
Q ss_conf --------------------------------------9
Q 000711 482 --------------------------------------S 482 (1338)
Q Consensus 482 --------------------------------------s 482 (1338)
.
T Consensus 321 ~~~i~~~~~~a~~~~~~~~np~~~t~e~i~~il~~alg~ 359 (359)
T d1o2da_ 321 SEELEKWVEKGSRAKHLKNTPGTFTPEKIRNIYREALGV 359 (359)
T ss_dssp HHHHHHHHHHHTTCGGGGGSSSCCCHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 999999999987385021899468999999999987669
|
| >d2hdsa1 e.3.1.1 (A:4-361) AMPC beta-Lactamase, class C {Escherichia coli, cephalosporinase [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta-lactamase/transpeptidase-like superfamily: beta-lactamase/transpeptidase-like family: beta-Lactamase/D-ala carboxypeptidase domain: AMPC beta-Lactamase, class C species: Escherichia coli, cephalosporinase [TaxId: 562]
Probab=100.00 E-value=0 Score=26933.85 Aligned_cols=1 Identities=0% Similarity=0.237 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~p~~~~~~v~~~i~~~~~~~~ipG~~v~v~~~g~~~~~~~G~~~~~~~~~~~~dt~f~iaS~tK~~ta~~i~~lv~~G~l 80 (358)
T d2hdsa1 1 APQQINDIVHRTITPLIEQQKIPGMAVAVIYQGKPYYFTWGYADIAKKQPVTQQTLFELGSVSKTFTGVLGGDAIARGEI 80 (358)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSEEEEEEEETTEEEEEEEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEEEECCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCC
T ss_conf 96789999999999999838998699999999999999688602566988999997863045999999999999755986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~ld~~v~~ylp~~~~~~~~~iTir~LLshtsG~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~Ysn~~~~llg~iie 160 (358)
T d2hdsa1 81 KLSDPTTKYWPELTAKQWNGITLLHLATYTAGGLPLQVPDEVKSSSDLLRFYQNWQPAWAPGTQRLYANSSIGLFGALAV 160 (358)
T ss_dssp CTTSBHHHHCTTCCCGGGTTCBHHHHHHTCSSCCCSSCCTTCCSHHHHHHHHHHCCCSSCTTSEECCCHHHHHHHHHHHT
T ss_pred CCCHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHH
T ss_conf 42300010000002321101455665026768980430121222089999876175335898426743541110013231
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~tg~~~~~~~~~~i~~PLgm~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aggl~st~~Dla~f~~~~l~~~~~ 240 (358)
T d2hdsa1 161 KPSGLSFEQAMQTRVFQPLKLNHTWINVPPAEEKNYAWGYREGKAVHVSPGALDAEAYGVKSTIEDMARWVQSNLKPLDI 240 (358)
T ss_dssp GGGTSCHHHHHHHHTTTTTTCTTEESSCCGGGGGGBCCEEETTEEECCCCCTTHHHHTCCEECHHHHHHHHHHHHCGGGC
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHCCCCC
T ss_conf 13699821202667775059642527898467315102433686412344545578764623899999999998589987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~G~~~G~~ 320 (358)
T d2hdsa1 241 NEKTLQQGIQLAQSRYWQTGDMYQGLGWEMLDWPVNPDSIINGSDNKIALAARPVKAITPPTPAVRASWVHKTGATGGFG 320 (358)
T ss_dssp SSHHHHHHHHHHTSEEEEETTEEECSSCEEEESSCCTHHHHTSTTSSSSCCCEECEEEEEEECCCSSEEEEEEEEETTEE
T ss_pred CHHHHHHHHHHHHCEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHH
T ss_conf 86888888877632302368766555402035667753234676655211234444556777777850797345267425
Q ss_pred -------------------------------------C
Q ss_conf -------------------------------------9
Q 000711 482 -------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------s 482 (1338)
-
T Consensus 321 s~~~~~Pe~~~~ivvltN~~~~~~~~~~~~~~il~al~ 358 (358)
T d2hdsa1 321 SYVAFIPEKELGIVMLANKNYPNPARVDAAWQILNALQ 358 (358)
T ss_dssp EEEEEEGGGTEEEEEEESBCCCHHHHHHHHHHHHHHHC
T ss_pred EEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 89999987997999997799998789999999999759
|
| >d1ecea_ c.1.8.3 (A:) Endocellulase E1 {Acidothermus cellulolyticus [TaxId: 28049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endocellulase E1 species: Acidothermus cellulolyticus [TaxId: 28049]
Probab=100.00 E-value=0 Score=26932.56 Aligned_cols=1 Identities=0% Similarity=-0.161 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~g~l~~~G~~~~d~~G~~~~l~GvN~~g~~~~~~~~~~~~~~~~~~~~~~i~~~G~N~VRlpv~~~~~~~~~~~~~~~ 80 (358)
T d1ecea_ 1 AGGGYWHTSGREILDANNVPVRIAGINWFGFETCNYVVHGLWSRDYRSMLDQIKSLGYNTIRLPYSDDILKPGTMPNSIN 80 (358)
T ss_dssp CCCSCCEEETTEEECTTSCEECCEEEECCCBTTTTCSCTTTTTSCHHHHHHHHHHTTCCEEEEEEEGGGGSTTCCCCSCC
T ss_pred CCCCEEEEECCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCHHHCCCCCCCCCCC
T ss_conf 99970996099799999989999987667411345666667724799999999976998899347688746877777755
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~ld~~v~~a~~~Gl~Vildlh~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~v~~~el~ 160 (358)
T d1ecea_ 81 FYQMNQDLQGLTSLQVMDKIVAYAGQIGLRIILDRHRPDCSGQSALWYTSSVSEATWISDLQALAQRYKGNPTVVGFDLH 160 (358)
T ss_dssp CSSSCTTTTTCCHHHHHHHHHHHHHHTTCEEEEEEEESBTTBCCSSSCCSSSCHHHHHHHHHHHHHHTTTCTTEEEEECS
T ss_pred CCCCCHHHHCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 33368111011699999999999997899066401356666888655688277999999999998864476536755320
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 NEP~~~~~~~~~~~~~~~~~~~~~~~~~Ir~~d~~~~v~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~H~Y 240 (358)
T d1ecea_ 161 NEPHDPACWGCGDPSIDWRLAAERAGNAVLSVNPNLLIFVEGVQSYNGDSYWWGGNLQGAGQYPVVLNVPNRLVYSAHDY 240 (358)
T ss_dssp SCCCTTCBSSCCCTTTBHHHHHHHHHHHHHHHCTTSEEEEECBSEETTEECSTTTBCTTTTTSCCCCSSSSCEEEEEECC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCEEEEEEEC
T ss_conf 33456776775413455899999999999850899589996546676665322566430432776678667658986414
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~igEfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~W~ 320 (358)
T d1ecea_ 241 ATSVYPQTWFSDPTFPNNMPGIWNKNWGYLFNQNIAPVWLGEFGTTLQSTTDQTWLKTLVQYLRPTAQYGADSFQWTFWS 320 (358)
T ss_dssp CTTTCCCGGGSCTTTTTTHHHHHHHHTHHHHHTTSSCEEEEECCCCCCSHHHHHHHHHHHHHTCCHHHHTTSSCEEEESC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 78767753456630356677788889999998459709992678888999869999999999999998540181699973
Q ss_pred -------------------------------------C
Q ss_conf -------------------------------------9
Q 000711 482 -------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------s 482 (1338)
.
T Consensus 321 ~k~~~~~~~G~~~~dw~~~~~~~~~~i~~~~~~~~~~~ 358 (358)
T d1ecea_ 321 WNPDSGDTGGILKDDWQTVDTVKDGYLAPIKSSIFDPV 358 (358)
T ss_dssp SCSCCTTTCCSBCTTSSSBCHHHHHHHGGGCCCCCCCC
T ss_pred CCCCCCCCCCEECCCCCCCCHHHHHHCCCCCCCCCCCC
T ss_conf 77777887640169888878366532030213568989
|
| >d1m7ja3 c.1.9.11 (A:62-419) N-acyl-D-aminoacid amidohydrolase, catalytic domain {Alcaligenes faecalis [TaxId: 511]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: D-aminoacylase, catalytic domain domain: N-acyl-D-aminoacid amidohydrolase, catalytic domain species: Alcaligenes faecalis [TaxId: 511]
Probab=100.00 E-value=0 Score=26933.50 Aligned_cols=1 Identities=100% Similarity=2.331 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
|
T Consensus 1 GFID~HtH~D~~~~~~p~~~~~~~~GVTT~v~GncG~s~aP~~~~~~~~~~~~l~~g~~~~w~t~~eyl~~le~~~~~~N 80 (358)
T d1m7ja3 1 GFIDSHTHDDNYLLKHRDMTPKISQGVTTVVTGNCGISLAPLAHANPPAPLDLLDEGGSFRFARFSDYLEALRAAPPAVN 80 (358)
T ss_dssp CEEESSCCCTTHHHHCTTCHHHHTTTEEEEEESCTTCCSCSEECSSCCTTGGGGCSSSCCEESSHHHHHHHHHHSCCSSE
T ss_pred CCEECCCCCCHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 92522788845532597986414699764888177777145775442005778504777686789999999973587654
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 va~~vgH~~lR~~vmg~~~~~at~~ei~~M~~ll~eal~~GA~G~Stgl~y~P~~~A~~~El~~lak~~~~~g~~~~~h~ 160 (358)
T d1m7ja3 81 AACMVGHSTLRAAVMPDLRREATADEIQAMQALADDALASGAIGISTGAFYPPAAHASTEEIIEVCRPLITHGGVYATHM 160 (358)
T ss_dssp EEEEEEHHHHHHHHCSCCSSCCCHHHHHHHHHHHHHHHHHTCCEEEEETTSGGGTTCCHHHHHHHHTHHHHHTCEEEEEC
T ss_pred EEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 03541455554415583023578899999999999999658765235775441035898999999988886098346653
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 r~~~~~~~~~~~e~~~~a~~~g~~~~ish~~~~~~~~~~~~~~~~~~~~~a~~G~~i~~d~yPy~ag~t~l~~~~~~~~~ 240 (358)
T d1m7ja3 161 RDEGEHIVQALEETFRIGRELDVPVVISHHKVMGKLNFGRSKETLALIEAAMASQDVSLDAYPYVAGSTMLKQDRVLLAG 240 (358)
T ss_dssp SCSSTTHHHHHHHHHHHHHHHTSCEEECSCCCCSGGGTTTHHHHHHHHHHHHHHSCEEEEECSCSCEEEECCCCTTTTSS
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHCC
T ss_conf 25663178888999999997298657513345777652568999999999863798641215854134522234444133
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~G~~l~eiA~~~g~~p~d~~~dl~~~~~~~~~~~e~~v~~~l~~p~~~igSDgga~~~~~hpr~~gt 320 (358)
T d1m7ja3 241 RTLITWCKPYPELSGRDLEEIAAERGKSKYDVVPELQPAGAIYFMMDEPDVQRILAFGPTMIGSDGLPHDERPHPRLWGT 320 (358)
T ss_dssp CEEEEEESSCGGGTTCBHHHHHHHTTSCHHHHHHHHCSEEEEECCCCHHHHHHHHHSTTEEECCCCCTTCSSCCTHHHHH
T ss_pred CHHHHCCCCCHHHCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf 30110266676542574999998839987887888742210010589999999983999228767665789958888661
Q ss_pred -------------------------------------C
Q ss_conf -------------------------------------9
Q 000711 482 -------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------s 482 (1338)
-
T Consensus 321 f~r~L~~~vRe~~~lsLeeAI~k~T~~pA~~~Gl~dRG 358 (358)
T d1m7ja3 321 FPRVLGHYSRDLGLFPLETAVWKMTGLTAAKFGLAERG 358 (358)
T ss_dssp HHHHHCCCCCCTCSSCHHHHHHTTTHHHHHHHTCTTCS
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 89999999567881789999999987999983987899
|
| >d1dosa_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=26932.02 Aligned_cols=1 Identities=0% Similarity=-0.559 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
.
T Consensus 1 ~~~~~~~~~~v~t~~nlk~~L~~A~~~~yAV~AfNv~n~e~~~Aii~AAee~~sPvIlq~s~g~~~y~gg~~~~~~~~~~ 80 (358)
T d1dosa_ 1 SKIFDFVKPGVITGDDVQKVFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQG 80 (358)
T ss_dssp CCGGGTCCSEECCTHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHHTCCEEEEECHHHHHHHHCTTSCCCSTTH
T ss_pred CCHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCHHHHHHHH
T ss_conf 94663346776757999999999998795699878698999999999999968998999061688770764156668767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~a~~v~~~a~~~~VPV~lHLDHg~~~~~~~i~~~idag~~~~~~~~~~gfsSVMiDgS~l~~eeNi~~Tk~v 160 (358)
T d1dosa_ 81 AAILGAISGAHHVHQMAEHYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKY 160 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHSSCSCSEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 88888898999999999837997899657652146778887788899999982777776556778857789999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ve~Ah~~gv~VEaElG~igg~Edg~~~~~~~~~~~~T~peea~~~~~ef~~~tgvD~LAvaiGt~HG~Yk~~~~~l~p~l 240 (358)
T d1dosa_ 161 LERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKAGNVVLTPTI 240 (358)
T ss_dssp HHHHHHTTCEEEEECCCCCCCCCCCSCCCCCCCCCSCCHHHHHHHHHHHHTTCSCEEEECCSSCCCSSCCCSCCCCCTHH
T ss_pred HHHHHHHCCEEEEEEEEEECCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHCCCCCCCCCCHH
T ss_conf 99985537768984336404567753210102330599899999999876467651565432614553478876677014
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~i~~~~~vp~~~~~LVlHGgSGip~e~i~~ai~~GV~KiNi~Tdlr~a~~~~ir~~~~~n~~~~~~~~~~~~~~ 320 (358)
T d1dosa_ 241 LRDSQEYVSKKHNLPHNSLNFVFHGGSGSTAQEIKDSVSYGVVKMNIDTDTQWATWEGVLNYYKANEAYLQGQLGNPKGE 320 (358)
T ss_dssp HHHHHHHHHHHHTCCTTCSCEEECSCTTCCHHHHHHHHHTTEEEEEECHHHHHHHHHHHHHHHHHHGGGSSSSEEETTEE
T ss_pred HHHHHHHHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCC
T ss_conf 69999999987289986534120588897688999999819848961719999999999999984846541113675444
Q ss_pred -------------------------------------C
Q ss_conf -------------------------------------9
Q 000711 482 -------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~k~~fDPrk~l~~a~~am~~~v~~~~~~fgs~nkl 358 (358)
T d1dosa_ 321 DQPNKKYYDPRVWLRAGQTSMIARLEKAFQELNAIDVL 358 (358)
T ss_dssp EEECHHHHCHHHHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 57777767908889999999999999999982897779
|
| >d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Bacillus subtilis, brefeldin A esterase [TaxId: 1423]
Probab=100.00 E-value=0 Score=26931.91 Aligned_cols=1 Identities=0% Similarity=-0.593 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~~dpr~dP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~ 80 (358)
T d1jkma_ 1 PGRLGDESSGPRTDPRFSPAMVEALATFGLDAVAAAPPVSASDDLPTVLAAVGASHDGFQAVYDSIALDLPTDRDDVETS 80 (358)
T ss_dssp CHHHHCTTCCTTTCTTSCHHHHHHHHTTTTTSCCCCCSSCTTSCHHHHHHHHHHHHHHHHHHHHHSCCCCTTCCCCEEEE
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
T ss_conf 99888987786779998999999997536665677998783315599999987647999988755454269988885079
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~i~~~dg~~i~~~iy~P~~~~~~~Pviv~~HGGG~~~gs~~~~~~~~~~~~la~~g~~VvsvdYRla~~~~pe~~~p~ 160 (358)
T d1jkma_ 81 TETILGVDGNEITLHVFRPAGVEGVLPGLVYTHGGGMTILTTDNRVHRRWCTDLAAAGSVVVMVDFRNAWTAEGHHPFPS 160 (358)
T ss_dssp EEEEECTTSCEEEEEEEEETTCCSCEEEEEEECCSTTTSSCSSSHHHHHHHHHHHHTTCEEEEEECCCSEETTEECCTTH
T ss_pred EEEEECCCCCEEEEEEEECCCCCCCCCEEEEECCCEEEECCCCCCCCCHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCH
T ss_conf 99996789988899999417888898749996387104066542221067888875100133000001246565677733
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~l~D~~~a~~wl~~~~~~~~~~ri~i~G~SAGG~La~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 240 (358)
T d1jkma_ 161 GVEDCLAAVLWVDEHRESLGLSGVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYISGGYAWDHERRLTELPSL 240 (358)
T ss_dssp HHHHHHHHHHHHHHTHHHHTEEEEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEEEEESCCCCCCTTSCHHHHHHHCTHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCHHHCCCCCCH
T ss_conf 56777888889987232468754034444672679999999976527876542223455211366576411110234210
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~a~~~~~~~lPp~li~~g~~D~l~~e~~~~~~~L~~aGv~v~~~~ 320 (358)
T d1jkma_ 241 VENDGYFIENGGMALLVRAYDPTGEHAEDPIAWPYFASEDELRGLPPFVVAVNELDPLRDEGIAFARRLARAGVDVAARV 320 (358)
T ss_dssp HHTTTSSSCHHHHHHHHHHHSSSSTTTTCTTTCGGGCCHHHHTTCCCEEEEEETTCTTHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 00234445516666677642775577457300234530110258999899987887787999999999998799589999
Q ss_pred -------------------------------------C
Q ss_conf -------------------------------------9
Q 000711 482 -------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------s 482 (1338)
-
T Consensus 321 ~~g~~Hgf~~~~~~~~~~~~~~~~~~i~~Fl~~~~~~~ 358 (358)
T d1jkma_ 321 NIGLVHGADVIFRHWLPAALESTVRDVAGFAADRARLR 358 (358)
T ss_dssp ETTCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ECCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 79896463542466697899999999999999897569
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=26935.08 Aligned_cols=1 Identities=0% Similarity=-0.592 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 dRv~P~C~~f~~CGGC~~qh~~y~~Ql~~K~~~l~~~~~~~~~~v~~~~p~~YR~r~~~~v~~~~~~~~~~~Gf~~~~s~ 80 (358)
T d1uwva2 1 ERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSS 80 (358)
T ss_dssp TBCCCSCTTTTTBTTCSCTTBCHHHHHHHHHHHHHHHHTSCCCEEECCCSSSCBSEEEEEEEEETTTTEEEEEEEBTTSS
T ss_pred CCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEECCCC
T ss_conf 98898999999485861008999999999999999862765676657888777415999845765889569989735884
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~iV~i~~C~i~~~~i~~~l~~lr~~l~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 160 (358)
T d1uwva2 81 DIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAP 160 (358)
T ss_dssp CEEECSCCTTBCHHHHHHHHHHHHHHTTCGGGGGEEEEEEEEETTEEEEEEEESSCCCHHHHHHHHHHHHHHTCEEEEES
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 06614125145577999999988754033445520399999831880899995266677789999975311363899940
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~g~~~~~~~~g~~~~i~p~sFfQ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~~V~gv 240 (358)
T d1uwva2 161 DSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGV 240 (358)
T ss_dssp SSSCCEEEECCCCEEEETTEEEECCSSSCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEE
T ss_pred CCEEEEEECCCCEEEECCCEEEEECCCHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHCCCCCCEEEEC
T ss_conf 43367762487248960888999877133003303446779889875246788449995366665521003565279822
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 E~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~l~~~~~~~ivYVSCnp~Tl 320 (358)
T d1uwva2 241 EGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATL 320 (358)
T ss_dssp ESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTCCHHHHHHHHHHCCSEEEEEESCHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCHHHH
T ss_conf 47499999999848755324621342204543234455404675599679973479999999974999899992898998
Q ss_pred -------------------------------------C
Q ss_conf -------------------------------------9
Q 000711 482 -------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------s 482 (1338)
.
T Consensus 321 aRDl~~l~~~gy~l~~i~~~D~FP~T~HvE~v~~l~Rv 358 (358)
T d1uwva2 321 ARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 358 (358)
T ss_dssp HHHHHHHHHTTCEEEEEEEECCSTTSSCCEEEEEEEC-
T ss_pred HHHHHHHHHCCCEEEEEEEEECCCCCCCEEEEEEEEEC
T ss_conf 87799998779767599997359998618999999969
|
| >d1edqa2 c.1.8.5 (A:133-443,A:517-563) Chitinase A, catalytic domain {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Type II chitinase domain: Chitinase A, catalytic domain species: Serratia marcescens [TaxId: 615]
Probab=100.00 E-value=0 Score=26929.56 Aligned_cols=1 Identities=0% Similarity=-0.294 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~p~~~~~~~~~~~~~~~~~~~v~~Yy~~W~~y~~~~~~~~I~~~~~THi~YAFa~v~~~~~~~~~~~~~~~~~~ 80 (358)
T d1edqa2 1 TDGSHLAPLKEPLLEKNKPYKQNSGKVVGSYFVEWGVYGRNFTVDKIPAQNLTHLLYGFIPICGGNGINDSLKEIEGSFQ 80 (358)
T ss_dssp TTCTTSCCCCCCCCTTCCCBCCCSSCEEEEEEEGGGGSTTCCCGGGSCGGGCSEEEEEEECBCCCTTTSGGGGGSTTHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHCCHHHCCEEEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 99754688779778889888789998999995952023899992469986797699950772698874654222333222
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~LK~~~p~lKvllSiGGw~~s~~~~~~a~~~~R~~ 160 (358)
T d1edqa2 81 ALQRSCQGREDFKVSIHDPFAALQKAQKGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGGWTLSDPFFFMGDKVKRDR 160 (358)
T ss_dssp HHHHHTTTCCTTSBCCSCHHHHHTSCBTTBCSTTCSSCHHHHHHHHHHHHCTTCEEEEEEECSSSCGGGGGTTSHHHHHH
T ss_pred CCCCCCCCCCCCCEEECCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHH
T ss_conf 22224466777615612714432033467664344344289999999974899769999989987888602358789999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 Fi~svv~~l~~y~~fDGIDIDWEyP~~~g~~~~~~~~~D~~nf~~Ll~eLR~~l~~~~~~~~~~~~ls~a~~~~~~~~~~ 240 (358)
T d1edqa2 161 FVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKIDK 240 (358)
T ss_dssp HHHHHHHHHHHCTTCCEEEEECSCTTSCSSCTTCCCTTHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECSHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHH
T ss_conf 99999999998353786131124323345778778978998999999999999887643317742025650476445413
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~l~~~vD~inlMtYD~~G~w~~~~~g~~t~l~~~~~~~~~~~~v~~~v~~~~~~Gvp~~KlvlGip~YGRs~~~K~ 320 (358)
T d1edqa2 241 VAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKPGKIVVGTAMDARSVQAKG 320 (358)
T ss_dssp SCHHHHGGGCSEEEEECCCSSCTTCSSSCCCSSCSSCCTTCTTCSCCHHHHHHHHHHHTCCGGGEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHEEEEECCCHHHHHHHH
T ss_conf 21777863378898860245577787887877888887667877652999999999878998896999685479999887
Q ss_pred -------------------------------------C
Q ss_conf -------------------------------------9
Q 000711 482 -------------------------------------S 482 (1338)
Q Consensus 482 -------------------------------------s 482 (1338)
-
T Consensus 321 ~y~~~~~lgG~~~W~~~~D~g~ll~a~~~~l~~~~~~~ 358 (358)
T d1edqa2 321 KYVLDKQLGGLFSWEIDADNGDILNSMNASLGNSAGVQ 358 (358)
T ss_dssp HHHHHHTCCEEEEECGGGCCSHHHHHHHHHTTCCBSCC
T ss_pred HHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 78862897439887156786289999998647854679
|
| >d1taza_ a.211.1.2 (A:) Catalytic domain of cyclic nucleotide phosphodiesterase 1b, PDE1B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: HD-domain/PDEase-like superfamily: HD-domain/PDEase-like family: PDEase domain: Catalytic domain of cyclic nucleotide phosphodiesterase 1b, PDE1B species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=26864.23 Aligned_cols=1 Identities=100% Similarity=-0.360 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~w~Fd~f~l~~~~~~~~L~~~~~~if~~~~l~~~f~i~~~~l~~Fl~~v~~~Y~~~~nPYHN~ 80 (357)
T d1taza_ 1 VGPTYSTAVLNCLKNLDLWCFDVFSLNQAADDHALRTIVFELLTRHNLISRFKIPTVFLMSFLDALETGYGKYKNPYHNQ 80 (357)
T ss_dssp CCCCCCHHHHHHHTTTTSTTCCHHHHHHHTTSCHHHHHHHHHHHHTTHHHHTTCCHHHHHHHHHHHHHHHTTTCCSSSSH
T ss_pred CCCCCCHHHHHHHHCCCCCCCCCHHCCHHCCCCHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 99889899999986455699980130101389829999999999878376439899999999999998457789875359
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~HA~dV~q~~~~lL~~~~~~~~l~~~E~~alliAal~HD~~HpG~~N~flv~s~~~LA~lYnd~SvLEnhH~~~~~~lL~ 160 (357)
T d1taza_ 81 IHAADVTQTVHCFLLRTGMVHCLSEIELLAIIFAAAIHDYEHTGTTNSFHIQTKSECAIVYNDRSVLENHHISSVFRLMQ 160 (357)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGGSCHHHHHHHHHHHHHTTTTCCSSCHHHHHHHTCHHHHHHTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf 99999999999999635632338999999999999988248899635799863887888639987789999999999980
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~i~~~l~~~~~~~~r~~ii~~ILaTDm~~H~~~l~~~~~~~~~~~~~~r~~~~~~lik~ADis~~~rp~~~~~~W~ 240 (357)
T d1taza_ 161 DDEMNIFINLTKDEFVELRALVIEMVLATDMSCHFQQVKTMKTALQQLERIDKPKALSLLLHAADISHPTKQWLVHSRWT 240 (357)
T ss_dssp SGGGCTTTTSCHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTCGGGSCHHHHHHHH
T ss_pred CCCHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 61000103899899999999999998222267689999999999974114109999999998623554236779999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~l~~Ef~~Qgd~E~~~gl~~sp~~dr~~~~~~~~QigFi~~iv~Plf~~l~~~~p~~~~p~~~~~~~n~~~~~~~~~~~ 320 (357)
T d1taza_ 241 KALMEEFFRQGDKEAELGLPFSPLCDRTSTLVAQSQIGFIDFIVEPTFSVLTDVAEKSVQPLADEDSKSKNQPSFQWRQP 320 (357)
T ss_dssp HHHHHHHHHHHHHHHHHTCC------CCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999998899845999987668754320788999999999999999998770653688899999999899987641
Q ss_pred ------------------------------------C
Q ss_conf ------------------------------------9
Q 000711 482 ------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------s 482 (1338)
|
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~en~~~~~~~~a~ 357 (357)
T d1taza_ 321 SLDVEVGDPNPDVVSFRSTWVKRIQENKQKWKERAAS 357 (357)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 2234557876234321314556545438999987439
|
| >d2qapa1 c.1.10.1 (A:1-357) Fructose-1,6-bisphosphate aldolase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Fructose-1,6-bisphosphate aldolase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=100.00 E-value=0 Score=26862.13 Aligned_cols=1 Identities=0% Similarity=-0.992 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~el~~~a~~~~~~GKGilAADeS~gT~~Krl~~iGventEenr~~~R~~l~tsp~~~~ 80 (357)
T d2qapa1 1 MSRVTVLQSQLPAYNRLKTPYESELIATVKKLTTPGKGLLAADESIGSCTKRFQPIGLSNTEEHRRQYRALMLEAEGFEQ 80 (357)
T ss_dssp CCEEEEEGGGSGGGCSCCCTTHHHHHHHHHHHTCTTCEEEEECCCTTTHHHHHGGGTCCCCHHHHHHHHHHHHTCTTGGG
T ss_pred CCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHH
T ss_conf 96121111037775445847899999999998079986998358998277789876999978999999998847987555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~IsGvILfeeTm~q~~~~g~~~~~ll~~kGIVPgIKVDkGl~~~~~G~~~ek~t~gLD~L~~R~~ey~~~Ga~faKwRsV 160 (357)
T d2qapa1 81 YISGVILHDETVGQKASNGQTFPEYLTARGVVPGIKTDMGLCPLLEGAEGEQMTEGLDGYVKRASAYYKKGCRFCKWRNV 160 (357)
T ss_dssp TEEEEEECHHHHTCBCTTSSBHHHHHHHTTCEEEEECCCCEEECSSSSTTCEEECCCTTHHHHHHHHHHTTCCEEEEEEE
T ss_pred CEEEEEECHHHHHHHCCCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEECCCCHHC
T ss_conf 44689812898732302799779999847981544247751478789974642625677999877754233300310100
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 i~i~~~~ps~~~I~~na~~laryA~i~q~~GLVPIVEPEVlidg~h~~e~~~~vte~vl~~~~~~l~~~~V~Leg~lLKp 240 (357)
T d2qapa1 161 YKIQNGTVSESAVRFNAETLARYAILSQMSGLVPIVEPEVMIDGKHDIDTCQRVSEHVWREVVAALQRHGVIWEGCLLKP 240 (357)
T ss_dssp ECCBTTBCCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEECC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 43666775044466568999999999997497631051233224564688899999999999998875314445776543
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 nMv~~G~~~~~~~~~e~va~~tv~~l~~tvP~~VpgIvfLSGGqS~eeAt~~LnaiN~~~~~~pw~lsfSfsRALQ~s~L 320 (357)
T d2qapa1 241 NMVVPGAESGKTAAPEQVAHYTVMTLARTMPAMLPGVMFLSGGLSEVQASEYLNAINNSPLPRPYFLSFSYARALQSSAL 320 (357)
T ss_dssp CCCCCCTTSSCCCCHHHHHHHHHHHHHHHSBTTCCEEEECCTTCCHHHHHHHHHHHTTCCSCCCSEEEEEESHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHH
T ss_conf 42224543345688556302356665214797787113147886789999999997424578998589863397608999
Q ss_pred ------------------------------------C
Q ss_conf ------------------------------------9
Q 000711 482 ------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------s 482 (1338)
-
T Consensus 321 k~W~g~~env~~aQ~~~~~Ra~~ns~A~~G~y~~~~e 357 (357)
T d2qapa1 321 KAWGGKESGLAAGRRAFLHRARMNSMAQLGKYKRSDD 357 (357)
T ss_dssp HHHTTSGGGHHHHHHHHHHHHHHHHHHHTTCCCGGGC
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9857974639999999999999868986688687789
|
| >d2b61a1 c.69.1.40 (A:2-358) Homoserine O-acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=100.00 E-value=0 Score=26861.11 Aligned_cols=1 Identities=0% Similarity=0.437 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~f~~~~f~l~~G~~l~~~~laY~t~G~ln~~~~NaVlv~h~~tg~~~~~~~~~~~gWW~~liG~g~alDt~kyf 80 (357)
T d2b61a1 1 SVQNVVLFDTQPLTLMLGGKLSYINVAYQTYGTLNDEKNNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYF 80 (357)
T ss_dssp CCEEEEESSSSCEECTTSCEECSEEEEEEEESCCCTTCCCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCE
T ss_pred CCCEEEEEECCCEECCCCCCCCCCEEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCEE
T ss_conf 97428998479825689986589569999623337889988998488776653335678887588712799766777518
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 VI~~n~lG~~~gSs~p~s~~p~tg~~~g~~FP~iti~D~v~aq~~Ll~~LGI~~l~~viG~SmGGmqAl~wa~~~Pd~v~ 160 (357)
T d2b61a1 81 FISSNVLGGCKGTTGPSSINPQTGKPYGSQFPNIVVQDIVKVQKALLEHLGISHLKAIIGGSFGGMQANQWAIDYPDFMD 160 (357)
T ss_dssp EEEECCTTCSSSSSCTTSBCTTTSSBCGGGCCCCCHHHHHHHHHHHHHHTTCCCEEEEEEETHHHHHHHHHHHHSTTSEE
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_conf 99855667766667767889888997776422110689999999999871866488884040788899999874267774
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~i~i~~~a~~s~~~~~~~~~~~~aI~~Dp~~~~G~Y~~~~~p~~GL~~Ar~~a~~ty~s~~~~~~~f~r~~~~~~~~~~ 240 (357)
T d2b61a1 161 NIVNLCSSIYFSAEAIGFNHVMRQAVINDPNFNGGDYYEGTPPDQGLSIARMLGMLTYRTDLQLAKAFGRATKSDGSFWG 240 (357)
T ss_dssp EEEEESCCSSCCHHHHHHHHHHHHHHHTSTTCGGGCCTTSCCCHHHHHHHHHHHHHHHSCHHHHHHHTTTCBCTTCCTTS
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCC
T ss_conf 33244456433235788878899999828777788755688830689999999886404789999874522234433236
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~vesyL~~~g~kf~~rfDan~yl~l~~a~~~~D~~~~~~~l~~aL~~I~a~vLvi~~~sD~lFpp~~~~~~a~~l~~ 320 (357)
T d2b61a1 241 DYFQVESYLSYQGKKFLERFDANSYLHLLRALDMYDPSLGYENVKEALSRIKARYTLVSVTTDQLFKPIDLYKSKQLLEQ 320 (357)
T ss_dssp CCBHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCCTTTTSSCHHHHHTTCCSEEEEEEETTCSSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 53569999999889887607999999999986632654333338999862699889998477506598999999999986
Q ss_pred ------------------------------------C
Q ss_conf ------------------------------------9
Q 000711 482 ------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------s 482 (1338)
+
T Consensus 321 ~~~~v~~~~I~S~~GHdafL~e~~~~~~~I~~fL~~~ 357 (357)
T d2b61a1 321 SGVDLHFYEFPSDYGHDAFLVDYDQFEKRIRDGLAGN 357 (357)
T ss_dssp TTCEEEEEEECCTTGGGHHHHCHHHHHHHHHHHHHTC
T ss_pred CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 6998699997999875554769899999999997359
|
| >d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Isocitrate/Isopropylmalate dehydrogenase-like superfamily: Isocitrate/Isopropylmalate dehydrogenase-like family: Dimeric isocitrate & isopropylmalate dehydrogenases domain: 3-isopropylmalate dehydrogenase, IPMDH species: Thiobacillus ferrooxidans [TaxId: 920]
Probab=100.00 E-value=0 Score=26856.88 Aligned_cols=1 Identities=0% Similarity=-1.125 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 M~kI~vipGDGIGpEV~~~~~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~t~~~~~~~dail~Gai~~p~~~~ 80 (357)
T d1a05a_ 1 MKKIAIFAGDGIGPEIVAAARQVLDAVDQAAHLGLRCTEGLVGGAALDASDDPLPAASLQLAMAADAVILGAVGGPRWDA 80 (357)
T ss_dssp CCEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCHHHHHHHHSSSSCHHHHHHHHHCSEEEEEECCCGGGTT
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCEEHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 97899977678669999999999999987708985999997552425441994899999999973065406656887567
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~lR~~ldlyanvRP~k~~pg~~~~~pl~~~~~~~vD~vivREnteg~Y~g~~~~~~~~~~~~~a~~~~ 160 (357)
T d1a05a_ 81 YPPAKRPEQGLLRLRKGLDLYANLRPAQIFPQLLDASPLRPELVRDVDILVVRELTGDIYFGQPRGLEVIDGKRRGFNTM 160 (357)
T ss_dssp SCGGGSHHHHHHHHHHHHTCCEEEEEEECCTTSGGGCSBCHHHHTTCEEEEEEECSSSTTTCSSCEEEEETTEEEEEEEE
T ss_pred CCCCCCCCCHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEECCCCCEEEEEEE
T ss_conf 78555666477889975695588777640367666789886667761399987455643357753221267764899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~t~~~~~ri~~~Af~~a~~r~k~vt~v~K~ni~~~~~lf~~~~~eva~~yp~i~~~~~~vD~~~~~lv~~P~~fdViv~ 240 (357)
T d1a05a_ 161 VYDEDEIRRIAHVAFRAAQGRRKQLCSVDKANVLETTRLWREVVTEVARDYPDVRLSHMYVDNAAMQLIRAPAQFDVLLT 240 (357)
T ss_dssp EEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCHHHHHHHHHHHHHGGGCTTSEEEEEEHHHHHHHHHHCGGGCSEEEE
T ss_pred EEEHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCCCCEEEC
T ss_conf 96289999999999988645786488885366411368999999999865898278751799999998745456567851
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~Nl~GDIlSDl~a~l~GglGl~ps~nig~~~a~fE~~HGsapdiaGk~~aNP~a~ils~ammL~~~lg~~~~A~~i~~Av 320 (357)
T d1a05a_ 241 GNMFGDILSDEASQLTGSIGMLPSASLGEGRAMYEPIHGSAPDIAGQDKANPLATILSVAMMLRHSLNAEPWAQRVEAAV 320 (357)
T ss_dssp CHHHHHHHHHHHHHTTSCGGGCEEEEECSSCEEEEESSCCCGGGTTTTCSCCHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 17888878899988735765410300068730102456878000589865949999999999972089879999999999
Q ss_pred ------------------------------------C
Q ss_conf ------------------------------------9
Q 000711 482 ------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------s 482 (1338)
-
T Consensus 321 ~~~i~~g~~T~Dlgg~~t~~~~T~e~~daV~~~l~~~ 357 (357)
T d1a05a_ 321 QRVLDQGLRTADIAAPGTPVIGTKAMGAAVVNALNLK 357 (357)
T ss_dssp HHHHHTTCCCGGGCCTTSCCCCHHHHHHHHHHTTTCC
T ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 9999769967566999998768999999999987469
|
| >d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Heme-dependent peroxidases superfamily: Heme-dependent peroxidases family: CCP-like domain: Fungal peroxidase (ligninase) species: Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=100.00 E-value=0 Score=26856.55 Aligned_cols=1 Identities=0% Similarity=0.537 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 a~c~~g~~~~na~cc~~~~v~~dlq~~~~~~~c~~~A~~~lRL~FHDcfv~~~~~g~~~~gGcDgSill~~~~E~~~~~N 80 (357)
T d1yyda1 1 AVCPDGTRVSHAACCAFIPLAQDLQETIFQNECGEDAHEVIRLTFHDAIAISRSQGPKAGGGADGSMLLFPTVEPNFSAN 80 (357)
T ss_dssp CBCTTSCBCSCGGGTTHHHHHHHHHHHTTTTSSSHHHHHHHHHHHHHHHCCCTTTCGGGCCSSSCHHHHSTTTGGGSGGG
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC
T ss_conf 92899753677435467999999999985587507899999999824105103567678999781302178644678665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~Gld~i~~~~~~~~~~~~~VScADiialAardAV~~~~GGP~~~v~~GR~Da~~a~~~~~LP~p~~~~~~l~~~Fa~~~G 160 (357)
T d1yyda1 81 NGIDDSVNNLIPFMQKHNTISAADLVQFAGAVALSNCPGAPRLEFLAGRPNKTIAAVDGLIPEPQDSVTKILQRFEDAGG 160 (357)
T ss_dssp TTTHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHTSTTCCCCCCEECCCSCCCCCCTTCSCCTTCCHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 88799999999999637998999999999999997306897204248888642234446789864569999999766512
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 lt~~dmVaLsGAHTIG~ah~~~~~~~~~~~~~tp~~fDn~~f~~ll~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~L~ 240 (357)
T d1yyda1 161 FTPFEVVSLLASHSVARADKVDQTIDAAPFDSTPFTFDTQVFLEVLLKGVGFPGSANNTGEVASPLPLGSGSDTGEMRLQ 240 (357)
T ss_dssp CCHHHHHHHGGGGGGCEESSSSTTCSCEESSSCTTSCSSHHHHHHTBCCCBCSSCSCCTTEECBSCCCCBTTBCCCCEEH
T ss_pred CCHHHHHEEECCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 88377611323331000245677754333466656301799999986368988888887601377744440102466248
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 SD~~L~~D~~T~~~V~~yA~n~~~F~~~Fa~AmvKms~lG~~~~~l~dcs~v~p~~~~~~~~~~~~p~~~~~~d~~~~~~ 320 (357)
T d1yyda1 241 SDFALAHDPRTACIWQGFVNEQAFMAASFRAAMSKLAVLGHNRNSLIDCSDVVPVPKPATGQPAMFPASTGPQDLELSCP 320 (357)
T ss_dssp HHHHHHHSTTTHHHHHHTTTCHHHHHHHHHHHHHHHTTTTSCGGGSEECGGGSCCCCCCCCCCCCBCTTCCGGGBCCCCT
T ss_pred HHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 99988419889999999965999999999999999997699953144577657899887788876789998676553055
Q ss_pred ------------------------------------C
Q ss_conf ------------------------------------9
Q 000711 482 ------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------s 482 (1338)
+
T Consensus 321 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (357)
T d1yyda1 321 SERFPTLTTQPGASQSLIAHCPDGSMSCPGVQFNGPA 357 (357)
T ss_dssp TSCCCCCCBCSCSSCCCCCSSTTSCSCCCCCCCCCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 8999887789985334457899877689756678999
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Probab=100.00 E-value=0 Score=26855.96 Aligned_cols=1 Identities=0% Similarity=0.305 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~p~~~~~~y~~~~G~tG~Gv~VaViDtGvd~~H~dl~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~ 80 (357)
T d1t1ga_ 1 AAPTAYTPLDVAQAYQFPEGLDGQGQCIAIIALGGGYDETSLAQYFASLGVSAPQVVSVSVDGATNQPTGDPNGPDGEVE 80 (357)
T ss_dssp CCCEEECHHHHHHHTTCCTTCCCTTCEEEEEESSCCCCHHHHHHHHHHTTCCCCCEEEEESTTCCCCCCSCTTSTHHHHH
T ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 99874789999998787889898897899997688778688987775058878998633799999887876556443005
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~d~~~~~GvAp~A~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~g~~vv~ 160 (357)
T d1t1ga_ 81 LDIEVAGALAPGAKIAVYFAPNTDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLA 160 (357)
T ss_dssp HHHHHHHHHSTTSEEEEEECCSSHHHHHHHHHHHHHCTTTCCSEEEECCCEEGGGSCHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCCEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 77643125414676998741247884589999998741149808965666576766543489998766532157867999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~p~~~~~~~~~~~~ 240 (357)
T d1t1ga_ 161 AAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLVASAGRIERETVWNDGPDGGSTGGGVSRIFPLPSWQERANVPPSA 240 (357)
T ss_dssp ECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEEEECSSCEEEEEECBCHHHHCBCCCEECSSSCCCGGGTTSCCCCCS
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 84168743211344544201135776236654023678775445201266666433447744121367523354234556
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~pd~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VaG~~ALl~q~~~~~~g~~np~l~~~~~~~~~dit~g 320 (357)
T d1t1ga_ 241 NPGAGSGRGVPDVAGNADPATGYEVVIDGETTVIGGTSAVAPLFAALVARINQKLGKPVGYLNPTLYQLPPEVFHDITEG 320 (357)
T ss_dssp STTCCCCCEECSEEEECCTTEEEEEEETTEEEEECSGGGHHHHHHHHHHHHHHHHSSCCCCCHHHHTTSCGGGEECCCSC
T ss_pred CCCCCCCCEECCEECCCCCCCCEEEECCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCEECCCCC
T ss_conf 67777773313321135787742774699666168831687999999999976405886765999986260133124326
Q ss_pred ------------------------------------C
Q ss_conf ------------------------------------9
Q 000711 482 ------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------s 482 (1338)
=
T Consensus 321 ~~~~~~~~~~~~a~~G~d~~tG~G~~n~~~~~~~l~p 357 (357)
T d1t1ga_ 321 NNDIANRARIYQAGPGWDPCTGLGSPIGIRLLQALLP 357 (357)
T ss_dssp BCCCSSSSCCSBCCSSSBTTTBTCEECHHHHHHHHCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 7788888776567668988846741549999874088
|
| >d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) species: Pseudomonas stutzeri [TaxId: 316]
Probab=100.00 E-value=0 Score=26855.53 Aligned_cols=1 Identities=0% Similarity=-0.293 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~~~g~~~~~~~f~w~~~~~~~~~~~~~i~~kl~yl~~lGv~aIwl~P~~~~~~~~~~~~~~~~~hgY~~ 80 (357)
T d1gcya2 1 DQAGKSPNAVRYHGGDEIILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYFW 80 (357)
T ss_dssp CCCCCCTTCCCCGGGCCCEEECCCTTHHHHSTTTHHHHHHHHHHHHHHTTCSEEEECCCSCCCCCBC---CCBCCSSTTC
T ss_pred CCCCCCCCCEEECCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCEECCCCCCCCCCCCCCCCCCH
T ss_conf 95556898605358987788624468788777747999999789999739999996947547866777777888788470
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~dy~vd~~~Gt~~df~~LV~~aH~~GI~VIlD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (357)
T d1gcya2 81 HDFNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRNDCADPGNYPNDCDDGDRFIGGD 160 (357)
T ss_dssp SSSCSCSSSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTCSSCSCCCCSSSSCBGGGSCCCSSSCBTTBSSCCSTTST
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 30656866799999999999999638737898700354788875100465688765456677778888878555445665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~dln~~np~v~~~~~~~~~~~~~~~giDGfR~Daa~~i~~~~~~~~~~~~~~~~~~~gE~~~~~~~~~~~~~~~~~~~~~ 240 (357)
T d1gcya2 161 ADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFDFVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPNWDWRNTASWQQ 240 (357)
T ss_dssp TBBCTTSHHHHHHHHHHHHHHHHHSCEEEEEESCGGGSCHHHHHHHHHHHCTTSEEEECCCCCGGGSCTTSGGGGSCHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEHHCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCCCHHHH
T ss_conf 54477987999999999998777528987999515308999999998501788234543225763011011210110456
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fl~NHD~~r~~~~~~~~~~~~~~~~~~~la~a 320 (357)
T d1gcya2 241 IIKDWSDRAKCPVFDFALKERMQNGSIADWKHGLNGNPDPRWREVAVTFVDNHDTGYSPGQNGGQHHWALQDGLIRQAYA 320 (357)
T ss_dssp HHHHHHHHHTSCEECHHHHHHHHHSCGGGGGGSGGGCSSHHHHTTEEECSCCTTTSBCSSGGGBCCSSCCCGGGHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 66767640344310035554300456999999985076656645257740477755424457864334287999999999
Q ss_pred ------------------------------------C
Q ss_conf ------------------------------------9
Q 000711 482 ------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------s 482 (1338)
-
T Consensus 321 lllt~pGiP~IyyGde~d~g~~d~i~~li~iRk~~~i 357 (357)
T d1gcya2 321 YILTSPGTPVVYWDHMYDWGYGDFIRQLIQVRRAAGV 357 (357)
T ss_dssp HHHHSSSEEEEEHHHHHTSSCHHHHHHHHHHHHHHTC
T ss_pred HHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 9995799127970785467886999999999976879
|
| >d2amxa1 c.1.9.1 (A:20-376) Adenosine deaminase (ADA) {Plasmodium yoelii [TaxId: 5861]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Adenosine/AMP deaminase domain: Adenosine deaminase (ADA) species: Plasmodium yoelii [TaxId: 5861]
Probab=100.00 E-value=0 Score=26856.35 Aligned_cols=1 Identities=0% Similarity=-1.191 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~lPK~eLH~HL~Gsi~~~~l~~la~~~~i~~~~~~~~~~~~~~~~~~~~~l~ 80 (357)
T d2amxa1 1 EIKFLKKEDVQNIDLNGMSKKERYEIWRRIPKVELHCHLDLTFSAEFFLKWARKYNLQPNMSDDEILDHYLFTKEGKSLA 80 (357)
T ss_dssp SCCCCCHHHHTTCCGGGCCHHHHHHHHHHSCEEECCBBGGGCCCHHHHHHHHHHTTCCTTSCHHHHHHHHCCCSTTCCHH
T ss_pred CCCHHHHCCCCCCCHHCCCCHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHH
T ss_conf 93455522555687000470789999983908898667878999999999999729799999499999874567626599
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~f~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~v~y~Elr~~p~~~~~~~g~~~~~v~~~i~~g~~~a~~~~~~~~~~~ 160 (357)
T d2amxa1 81 EFIRKAISVSDLYRDYDFIEDLAKWAVIEKYKEGVVLMEFRYSPTFVSSSYGLDVELIHKAFIKGIKNATELLNNKIHVA 160 (357)
T ss_dssp HHHHHHHHHGGGCCSHHHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTTSSEEE
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99999878778733899999999999999998415161133454324545676457799999999999987439845898
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 l~~~~~~~~~~~~~~~~~~~a~~~~~~vvGidl~g~e~~~~~~~~~f~~ar~~gl~it~HaGE~~~~~~~~~i~~ai~~l 240 (357)
T d2amxa1 161 LICISDTGHAAASIKHSGDFAIKHKHDFVGFDHGGREIDLKDHKDVYHSVRDHGLHLTVHAGEDATLPNLNTLYTAINIL 240 (357)
T ss_dssp EEEECCCCCSHHHHHTTTHHHHHTTTTEEEEECCSSCCCCGGGHHHHHHHHHTTCEEEEEESCCTTCSSSHHHHHHHHTS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 63210266125557999999996388657312467766623469999999831876443455458999747899999704
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~RIgHGv~~~~d~~l~~~l~~~~I~leiCPtSN~~~~~~~~~~~HP~~~l~~~Gv~v~l~TDDp~~f~t~ls~ey~~~ 320 (357)
T d2amxa1 241 NVERIGHGIRVSESDELIELVKKKDILLEVCPISNLLLNNVKSMDTHPIRKLYDAGVKVSVNSDDPGMFLSNINDNYEKL 320 (357)
T ss_dssp CCSEEEECGGGGGCHHHHHHHHHHTCEEEECHHHHHHTTSSSCSTTCTHHHHHHTTCEEEECCBCHHHHTCCHHHHHHHH
T ss_pred CCCCCCCCHHEECCHHHHHHHHHHCCEEEECCCCHHHHCCCCCCCCCHHHHHHHCCCEEEEECCCCHHHCCCHHHHHHHH
T ss_conf 97313652430058788998887185389887500242358970028999999889959995899412178879999999
Q ss_pred ------------------------------------C
Q ss_conf ------------------------------------9
Q 000711 482 ------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------s 482 (1338)
=
T Consensus 321 ~~~~~ls~~el~~l~~nsi~~sF~~~~~K~~l~~~~~ 357 (357)
T d2amxa1 321 YIHLNFTLEEFMIMNNWAFEKSFVSDDVKSELKALYF 357 (357)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHC
T ss_pred HHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 9981989999999999999986899999999998659
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=26854.73 Aligned_cols=1 Identities=100% Similarity=0.869 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
.
T Consensus 1 ~K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (357)
T d1db3a_ 1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD 80 (357)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCCC
T ss_conf 98899968886899999999997869899997897555556688887403303897599982067979988887525987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~~E~~~~~P~~~Y~~sK 160 (357)
T d1db3a_ 81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAK 160 (357)
T ss_dssp EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTSCCCCCSHHHHHH
T ss_pred EEEEEECCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 89985203553446559999999999999999999998489988689999845651889888958999999988699999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~D~~~a~~~~~ 240 (357)
T d1db3a_ 161 LYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMML 240 (357)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCEEECHHHHHHHHHH
T ss_conf 99999999999996997899996454599877677714789999999838972699799980444443044878999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~yni~sg~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 320 (357)
T d1db3a_ 241 QQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAEVETLL 320 (357)
T ss_dssp SSSSCCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCTTCEEEEECGGGCCCCC-CCCC
T ss_pred HCCCCCEEEECCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 27899759978998164599999999983976321455331000233211222433566760376155357886446404
Q ss_pred ------------------------------------C
Q ss_conf ------------------------------------9
Q 000711 482 ------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------s 482 (1338)
|
T Consensus 321 ~d~skakk~LGw~P~~sl~egI~~~I~~~l~~~kk~~ 357 (357)
T d1db3a_ 321 GDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKKHS 357 (357)
T ss_dssp BCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 4889999997998689899999999999999970129
|
| >d1g01a_ c.1.8.3 (A:) Alkaline cellulase K catalytic domain {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Alkaline cellulase K catalytic domain species: Bacillus sp. [TaxId: 1409]
Probab=100.00 E-value=0 Score=26853.83 Aligned_cols=1 Identities=0% Similarity=-0.028 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~p~~a~~~~~l~~~G~~~l~d~~G~~v~lrGv~~~~~~w~~~~~~~~~~~~l~~~~G~N~VRlp~~~~~~~~ 80 (357)
T d1g01a_ 1 PAGMQAVKSPSEAGALQLVELNGQLTLAGEDGTPVQLRGMSTHGLQWFGEIVNENAFVALSNDWGSNMIRLAMYIGENGY 80 (357)
T ss_dssp CTTCTTCCCHHHHCSCEEEEETTEEEEECTTSCBCCCEEEEESCHHHHGGGCSHHHHHHHHTTSCCSEEEEEEESSSSST
T ss_pred CCCCCCCCCCCCCCCCCEEEECCEEEEECCCCCEEEEEEEECCCCHHCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCC
T ss_conf 98544567965346788599738589999999999999885676200465568999999998649977988636557887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~ld~~V~~a~~~GiyVIlD~H~~~~~~~~~~~~~~~~~~W~~iA~ry~~~~~~~~v~~el~NEP~~~~~~~~ 160 (357)
T d1g01a_ 81 ATNPEVKDLVYEGIELAFEHDMYVIVDWHVHAPGDPRADVYSGAYDFFEEIADHYKDHPKNHYIIWELANEPSPNNNGGP 160 (357)
T ss_dssp TTCTTHHHHHHHHHHHHHHTTCEEEEEEECCSSSCTTSGGGTTHHHHHHHHHHHHTTCTTGGGEEEECCSCCCSCCTTSC
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf 44989999999999999978988998613268888880355666779999999975476237999987516353567654
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~IR~~~~~~iiv~~~~w~~~~~~~~~~~~~~~nvvys~H~Y~~~~~~~~~~~~~~~~~~ 240 (357)
T d1g01a_ 161 GLTNDEKGWEAVKEYAEPIVEMLREKGDNMILVGNPNWSQRPDLSADNPIDAENIMYSVHFYTGSHGASHIGYPEGTPSS 240 (357)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHTCHHHHHHSCCSSSSEEEEEEEETTTSCCCCCCCCTTCCGG
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHH
T ss_conf 56676136899999999999999853993499804876665200013557999779998872675677667777566447
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~g~Pv~vgEfG~~~~~~~~~~~~~~~~~~~~~~~~~~isw~~W~~~~~~~~~~~~~~~~~~~~~~~ 320 (357)
T d1g01a_ 241 ERSNVMANVRYALDNGVAVFATEWGTSQANGDGGPYFDEADVWLNFLNKHNISWANWSLTNKNEISGAFTPFELGRTDAT 320 (357)
T ss_dssp GCCCHHHHHHHHHHTTCCEEEEEEESSBTTTBSCCCHHHHHHHHHHHHHTTCCEEEEEECCSSSTTCSBCCCCTTSCCCC
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 78999999999997699889983377678887876789999999999974993589957588776433067665566754
Q ss_pred ------------------------------------C
Q ss_conf ------------------------------------9
Q 000711 482 ------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------s 482 (1338)
.
T Consensus 321 ~~~~~~~~~w~~~~l~~sG~~v~~~l~g~~~~~~~~~ 357 (357)
T d1g01a_ 321 DLDPGANQVWAPEELSLSGEYVRARIKGIEYTPIDRT 357 (357)
T ss_dssp CSSCCTTCCCCGGGBCHHHHHHHHHHHTCCCCCCCCC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
T ss_conf 5566667888765615467999998536778885789
|
| >d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Pepsin species: Mucor pusillus [TaxId: 4840]
Probab=100.00 E-value=0 Score=26853.33 Aligned_cols=1 Identities=100% Similarity=2.364 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
|
T Consensus 1 ~~~~~~~~~~~~~~~Y~~~i~iGtP~Q~~~~ivDTGSs~~wv~~~~C~~~~~c~~~~~f~~~~SsT~~~~~~~~~~~y~~ 80 (357)
T d1mppa_ 1 GSVDTPGLYDFDLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKRFFDPSSSSTFKETDYNLNITYGT 80 (357)
T ss_dssp CCEEEEEEEETTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCGGGTCCSSCCBCGGGCTTCEEEEEEEEEECSS
T ss_pred CCCCCCCEECCCCCEEEEEEEECCCCEEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
T ss_conf 95445525458798899999982899599999948975428714899998553589878874587622679445886588
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 g~~~G~~~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 160 (357)
T d1mppa_ 81 GGANGIYFRDSITVGGATVKQQTLAYVDNVSGPTAEQSPDSELFLDGIFGAAYPDNTAMEAEYGDTYNTVHVNLYKQGLI 160 (357)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEEEESGGGSSCTTCSSCCCEEEECSCGGGSHHHHHHSCCCCCHHHHHHHTTSS
T ss_pred CCEEEEEEEEECCCCCCEECCEEEEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCC
T ss_conf 71789998350212660488688999994045423215655433211235545776422244688788789999861565
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~fs~~l~~~~~~G~l~~Gg~d~~~~~~~~~~~pi~~~~~~~~~~~v~l~~i~v~g~~~~~~~~~~~~ilDSGts~~~ 240 (357)
T d1mppa_ 161 SSPVFSVYMNTNDGGGQVVFGGVNNTLLGGDIQYTDVLKSRGGYFFWDAPVTGVKIDGSDAVSFDGAQAFTIDTGTNFFI 240 (357)
T ss_dssp SSSEEEEECCCSSSEEEEEESSCCGGGBSSCCEEEECEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTCCSEE
T ss_pred CCCEEEEEECCCCCCCEEECCCCCHHHCCCCEEEEEECCCCCCCEEEEEEEEEEEECCEEEEECCCCCCEEEECCCCCCC
T ss_conf 55169998336899963987531766727730578721477874368998706998875765328973148613674236
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 lp~~~~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~c~~~~~~~~ 320 (357)
T d1mppa_ 241 APSSFAEKVVKAALPDATESQQGYTVPCSKYQDSKTTFSLVLQKSGSSSDTIDVSVPISKMLLPVDKSGETCMFIVLPDG 320 (357)
T ss_dssp EEHHHHHHHHHHHCTTCEEETTEEEEEHHHHTTCCCEEEEEEECTTCSSCEEEEEEEGGGGEEECSSSSCEEEESEEEES
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCCCCEEEEECHHHEEEEECCCCCEEEEEECCCC
T ss_conf 98999999999856775346885102420144568507999811565356679998659928996589988999984799
Q ss_pred ------------------------------------C
Q ss_conf ------------------------------------9
Q 000711 482 ------------------------------------S 482 (1338)
Q Consensus 482 ------------------------------------s 482 (1338)
-
T Consensus 321 ~~~~ILG~~fl~~~yvvfD~~~~~iGfA~~~~~~~~~ 357 (357)
T d1mppa_ 321 GNQFIVGNLFLRFFVNVYDFGKNRIGFAPLASGYEND 357 (357)
T ss_dssp SSCCEEEHHHHTTEEEEEETTTTEEEEEEBCTTTCCC
T ss_pred CCCEEECHHHHCCEEEEEECCCCEEEEEECCCCCCCC
T ss_conf 9999945697397999998999999999998678998
|
| >d16vpa_ d.180.1.1 (A:) Conserved core of transcriptional regulatory protein vp16 {Herpes simplex virus type 1 [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Conserved core of transcriptional regulatory protein vp16 superfamily: Conserved core of transcriptional regulatory protein vp16 family: Conserved core of transcriptional regulatory protein vp16 domain: Conserved core of transcriptional regulatory protein vp16 species: Herpes simplex virus type 1 [TaxId: 10298]
Probab=100.00 E-value=0 Score=26790.26 Aligned_cols=1 Identities=0% Similarity=-0.559 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
.
T Consensus 1 ~r~psPp~~~sp~~Ly~rLl~eL~F~eGp~Lls~le~wNeDLFSclP~n~dLY~~~~~LSt~~~eVi~~~~~~~p~~~~i 80 (356)
T d16vpa_ 1 SRMPSPPMPVPPAALFNRLLDDLGFSAGPALCTMLDTWNEDLFSALPTNADLYRECKFLSTLPSDVVEWGDAYVPERTQI 80 (356)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHTCTTHHHHHHHHHHCCCCCSTTSCCCGGGGTTCGGGCSCHHHHHHHHHHCCCCCSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCC
T ss_conf 99998988789799999999873998517899999984205550377874676531055389899999876179987750
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 dL~ahG~~~~P~~Pa~~eeLP~Yv~avq~fF~sELrAREe~Y~~Ll~~YC~AL~~yLr~sa~~~~r~~~~~~~~~~~~~~ 160 (356)
T d16vpa_ 81 DIRAHGDVAFPTLPATRDGLGLYYEALSRFFHAELRAREESYRTVLANFCSALYRYLRASVRQLHRQAHMRGRDRDLGEM 160 (356)
T ss_dssp CTTCCCSSCCCCCCSSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 01478998899999882353899999999999999998999999999999999999999887751310344541679999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~rq~i~~rYYRE~arLArllylHLYls~tRevswrl~A~Q~~~q~vF~~L~y~W~q~RQf~ClFhPvlfnhGvV~leg~p 240 (356)
T d16vpa_ 161 LRATIADRYYRETARLARVLFLHLYLFLTREILWAAYAEQMMRPDLFDCLCCDLESWRQLAGLFQPFMFVNGALTVRGVP 240 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHTTEEEEESCSHHHHSSCCSCSBCCSEEEETTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEECCCCCEEEEECCCEEEECCEEEECCCC
T ss_conf 99999999999999999999999999999999999999986132634605740113432367535335417635667987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 L~a~~Lr~~Ny~R~eLGLPlvR~~lvEE~~~pL~~~P~fs~~~pRssGyl~~~IraKmeaYS~~hp~~~~~~~~dH~YaR 320 (356)
T d16vpa_ 241 IEARRLRELNHIREHLNLPLVRSAATEEPGAPLTTPPTLHGNQARASGYFMVLIRAKLDSYSSFTTSPSEAVMREHAYSR 320 (356)
T ss_dssp CCHHHHHHHHHHHHHTTCCCCBCTTTSCTTSCSCCCCCCCTTSCCHHHHHHHHHHHHHTSTTC-----------------
T ss_pred CCHHHHHHHHHHHHHCCCCEEEHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 88899988889998718840110100468987425886556785305689999999864420368888875444576447
Q ss_pred -----------------------------------C
Q ss_conf -----------------------------------9
Q 000711 482 -----------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------s 482 (1338)
-
T Consensus 321 ~~~~~nYGst~eaml~~~~~~~p~~~~~~~~r~~~~ 356 (356)
T d16vpa_ 321 APTKNNYGSTIEGLLDLPDDDAPEEAGLAAPRLSFL 356 (356)
T ss_dssp ----------------------------CCCEEEEC
T ss_pred CCCCCCCCCCHHHCCCCCCCCCHHHHCCCCCCCCCC
T ss_conf 888888773232101699999635532234321359
|
| >d1r3sa_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: UROD/MetE-like family: Uroporphyrinogen decarboxylase, UROD domain: Uroporphyrinogen decarboxylase, UROD species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=26782.94 Aligned_cols=1 Identities=0% Similarity=-1.657 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~ne~~l~al~g~~~dr~PVw~MrqAGRylpey~~~r~~~~f~e~~~~pe~~ae~tl~p~~~~~~DaaiifsDil~~ 80 (356)
T d1r3sa_ 1 FPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCRSPEACCELTLQPLRRFPLDAAIIFSGILVV 80 (356)
T ss_dssp CCCCSCCHHHHHHHTCCCSSCCBCCTTSSSTTSHHHHHHHHTSCHHHHHTCHHHHHHHHHHHHHHSCCSCEECCCCTTHH
T ss_pred CCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCHH
T ss_conf 99764489999975998999998888445425889999871289999855999999998448986795425622442101
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~ealG~~v~f~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~l~~v~eai~~~~~~l~~~~pliGf~ggP~Tla~yli~~~~ 160 (356)
T d1r3sa_ 81 PQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGG 160 (356)
T ss_dssp HHHTTCCCEEETTTEEECSSCCCSGGGGGGSCCGGGHHHHTHHHHHHHHHHHHHHTTSSCEEEEEECHHHHHHHHHHSSC
T ss_pred HHHCCCEEEECCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHCCC
T ss_conf 34228635644889866776433202332101100002144899999999998735565663032031888999872134
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~pe~~~~ll~~lt~~~~~~~~~qi~aGad~i~ifDs~a~~l~~~~~~~~~~~~~~~i~~~i~~~~~~ 240 (356)
T d1r3sa_ 161 SSTMAQAKRWLYQRPQASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLRE 240 (356)
T ss_dssp CSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEETTGGGSCHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 21378898876303577889999999988999999860566540203520121357888888899999999999875101
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~i~~~~~~~~~l~~~~~~g~d~is~D~~~~l~~~~~~~~~~i~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~ 320 (356)
T d1r3sa_ 241 AGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLDPCALYASEEEIGQLVKQMLDDFGP 320 (356)
T ss_dssp TTCCCCCEEEEETTCGGGHHHHTTSSCSEEECCTTSCHHHHHHHHCSSSEEEEEECGGGGGSCHHHHHHHHHHHHHHHCS
T ss_pred CCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHCC
T ss_conf 24777302101044787888874248561254235799999998489832882888899859999999999999998189
Q ss_pred -----------------------------------C
Q ss_conf -----------------------------------9
Q 000711 482 -----------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------s 482 (1338)
-
T Consensus 321 ~~~I~nlGhGI~p~tp~env~a~v~~vr~~~k~~~~ 356 (356)
T d1r3sa_ 321 HRYIANLGHGLYPDMDPEHVGAFVDAVHKHSRLLRQ 356 (356)
T ss_dssp SSEEEEESSCCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHHHCHHHCC
T ss_conf 994896999759899999999999999996887459
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=26781.09 Aligned_cols=1 Identities=100% Similarity=-0.360 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~e~~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg~s~~~g~~~~~~~~~~~~ 80 (356)
T d1jnra2 1 VYYPKKYELYKADEVPTEVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGLSAINTYIDLTG 80 (356)
T ss_dssp CCCCSSCCCCCGGGSCEEEEECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCSTTTTCEEEESCCCCSSS
T ss_pred CCCCCCHHHHCCCCCCCEEEECCEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 97775033213556776687649899898889999999999978867697999967889997359877899974233323
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~Ds~e~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (356)
T d1jnra2 81 RSERQNTLEDYVRYVTLDMMGLAREDLVADYARHVDGTVHLFEKWGLPIWKTPDGKYVREGQWQIMIHGESYKPIIAEAA 160 (356)
T ss_dssp SBSCCCCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCBCBCTTSCBCBSSSSCEEEEETTHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHH
T ss_conf 56766899999999998606876188999988741123556876097742013323322333100246640788999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~i~~~~~~~~l~~~~~~~~~v~~~~~~~~~~G~~~~i~Ak~VILATGG~~~~~~~~~~~~~~~~~~~~~~~tG 240 (356)
T d1jnra2 161 KMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGATLLFRPRSTGEAAGRTWYAIFDTG 240 (356)
T ss_dssp HHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCSSSCCSCCSGGGGCCSSCTTCBS
T ss_pred HHHHCCEEEEEEEEEEEEEEECCCCCCEEEEEEEEEECCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 86304517899999887653024665214568877404837984078799917875331357777644564447987577
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 dG~~ma~~aGa~l~~~~~~q~~p~~~~~~~~~~~~~~~~~~~~~~~gl~~~g~~~~~~g~rf~~~~~~~g~~a~~~~~~~ 320 (356)
T d1jnra2 241 SGYYMGLKAGAMLTQAGFWVCGPEDLMPEEYAKLFPLKYNRMTTVKGLFAIGDCAGANPHKFSSGSFTEGRIAAKAAVRF 320 (356)
T ss_dssp HHHHHHHHHTCCEESCEECCCCCTTTCCHHHHTTCSSCCTTBCSSBTEEECGGGBCSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 09999998534524787247616645782432456567664004352121420017766557355655412328999999
Q ss_pred -----------------------------------C
Q ss_conf -----------------------------------9
Q 000711 482 -----------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------s 482 (1338)
+
T Consensus 321 i~~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~~~~ 356 (356)
T d1jnra2 321 ILEQKPNPEIDDAVVEELKKKAYAPMERFMQYKDLS 356 (356)
T ss_dssp HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 972899887788999999988776899998507999
|
| >d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Isocitrate/Isopropylmalate dehydrogenase-like superfamily: Isocitrate/Isopropylmalate dehydrogenase-like family: Dimeric isocitrate & isopropylmalate dehydrogenases domain: 3-isopropylmalate dehydrogenase, IPMDH species: Bacillus coagulans [TaxId: 1398]
Probab=100.00 E-value=0 Score=26781.03 Aligned_cols=1 Identities=0% Similarity=-0.859 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 m~~rI~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~et~e~i~~~dail~Gav~~p~~~ 80 (356)
T d1v53a1 1 MKMKLAVLPGDGIGPEVMDAAIRVLKTVLDNDGHEAVFENALIGGAAIDEAGTPLPEETLDICRRSDAILLGAVGGPKWD 80 (356)
T ss_dssp CCEEEEEEEESTTHHHHHHHHHHHHHHHHTTSSCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGGS
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCCEEEECCCCCCCC
T ss_conf 97079998878765999999999999998624997499999556899997499288999999986082799256798867
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~lR~~ldlyanvRPv~~~~gi~~~~p~~~~~~~~vD~vivREnteg~Y~g~~~~~~~~~~~~~~~~~ 160 (356)
T d1v53a1 81 HNPASLRPEKGLLGLRKEMGLFANLRPVKAYATLLNASPLKRERVENVDLVIVRELTGGLYFGRPSERRGPGENEVVDTL 160 (356)
T ss_dssp SSCGGGCHHHHHHHHHHHHTCCEEEEEEECCGGGTTTSSBCHHHHTTCEEEEEEECSSBTTTCSCEEEESSTTCEEEEEE
T ss_pred CCCCCCCCCHHHHHHHHHHCCEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCEECCCCCCCCCCCC
T ss_conf 78988583021689998708725566665430344579977667788239996046766065305330224652002200
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~t~~~~~ri~r~af~~A~~r~kkVt~v~K~nv~~~~~~~~~~~~eva~eyp~I~~~~~~vD~~~~~lv~~P~~fdViv~ 240 (356)
T d1v53a1 161 AYTREEIERIIEKAFQLAQIRRKKLASVDKANVLESSRMWREIAEETAKKYPDVELSHMLVDSTSMQLIANPGQFDVIVT 240 (356)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTSEEEEEECTTTCHHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEE
T ss_pred EEEEEEEEEHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHCCCCCCEEEC
T ss_conf 02321430034577767874598465775254102450586999999836898699998836678898722344664532
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~Nl~GDIlSDl~a~l~GglGl~~s~ni~~d~~a~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~~lg~~~~A~~i~~A 320 (356)
T d1v53a1 241 ENMFGDILSDEASVITGSLGMLPSASLRSDRFGMYEPVHGSAPDIAGQGKANPLGTVLSAALMLRYSFGLEKEAAAIEKA 320 (356)
T ss_dssp CHHHHHHHHHHHTTTTSCTTSCEEEEECSSSCEEEEESSCCCGGGTTSSCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 67888888899988736763111200268731463378887234448996592999999999998637987999999999
Q ss_pred -----------------------------------C
Q ss_conf -----------------------------------9
Q 000711 482 -----------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------s 482 (1338)
+
T Consensus 321 v~~~l~~g~~T~Dl~~~~gg~~~T~e~~dav~~~L~ 356 (356)
T d1v53a1 321 VDDVLQDGYCTGDLQVANGKVVSTIELTDRLIEKLN 356 (356)
T ss_dssp HHHHHHTTEESSSSCCTTCEECCHHHHHHHHHHHCC
T ss_pred HHHHHHCCCCCCCCCCCCCCEECHHHHHHHHHHHCC
T ss_conf 999998599473556679970379999999998429
|
| >d1w8oa3 b.68.1.1 (A:47-402) Micromonospora sialidase, N-terminal domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Micromonospora sialidase, N-terminal domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=100.00 E-value=0 Score=26781.19 Aligned_cols=1 Identities=100% Similarity=2.331 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
|
T Consensus 1 ~~~~~~~~~~~~~g~~g~~~~RiPslv~~~~G~lla~~~~r~~~~~d~~~~~i~~~rS~D~G~TWs~~~~v~~~~~~~~~ 80 (356)
T d1w8oa3 1 GEPLYTEQDLAVNGREGFPNYRIPALTVTPDGDLLASYDGRPTGIGAPGPNSILQRRSTDGGRTWGEQQVVSAGQTTAPI 80 (356)
T ss_dssp CCCCEEEEEEEETTSTTCSCEEEEEEEECTTSCEEEEEEECTTSCSTTSCCEEEEEEESSTTSSCCCCEEEECCBCSSSC
T ss_pred CCCCCCEEECCCCCCCCCEEEEECEEEEECCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCC
T ss_conf 99741200110057688383670789998999999999646489988887329999906899787788873238887764
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~v~~~~~g~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~ 160 (356)
T d1w8oa3 81 KGFSDPSYLVDRETGTIFNFHVYSQRQGFAGSRPGTDPADPNVLHANVATSTDGGLTWSHRTITADITPDPGWRSRFAAS 160 (356)
T ss_dssp BEEEEEEEEECTTTCCEEEEEEEESSCCTTTCCSCCCTTCTTSCEEEEEEESSTTSSCEEEECGGGSCCSTTCCEEEECS
T ss_pred CCCCCCEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 34466248996899839999964035774443336787787479999983687652104652056655434432123466
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 240 (356)
T d1w8oa3 161 GEGIQLRYGPHAGRLIQQYTIINAAGAFQAVSVYSDDHGRTWRAGEAVGVGMDENKTVELSDGRVLLNSRDSARSGYRKV 240 (356)
T ss_dssp EECEECCSSTTTTCEEEEEEEECTTSCEEEEEEEESSTTSSCEECCCBCSSCCSEEEEECTTSCEEEEECCTTCCSEEEE
T ss_pred CCCEEEEECCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEECCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCEEE
T ss_conf 32046000244664045553012236632577752688752001446675543316899257620255642555540577
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~S~D~G~tw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~~S~D~G~tW~~~~~i~~~ 320 (356)
T d1w8oa3 241 AVSTDGGHSYGPVTIDRDLPDPTNNASIIRAFPDAPAGSARAKVLLFSNAASQTSRSQGTIRMSCDDGQTWPVSKVFQPG 320 (356)
T ss_dssp EEESSTTSCCCCCEEEEEEECSSCCCEEEESSTTCCTTCSGGGCEEEEEECCSSSSEEEEEEEESSTTSCCCEEEEEEEE
T ss_pred EEECCCCCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCEECCCCCEECCC
T ss_conf 88426887543022014335788787326743665346789809999799998897316999990799155886081799
Q ss_pred -----------------------------------C
Q ss_conf -----------------------------------9
Q 000711 482 -----------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------s 482 (1338)
-
T Consensus 321 ~~~Ys~~~~~~dg~i~~~ye~g~~~~~~~~~l~~~~ 356 (356)
T d1w8oa3 321 SMSYSTLTALPDGTYGLLYEPGTGIRYANFNLAWLG 356 (356)
T ss_dssp ECCCEEEEECTTSCEEEEECCSSEEEEEEECHHHHT
T ss_pred CCCCCEEEECCCCEEEEEEECCCCCEEEEEEHHHCC
T ss_conf 976863689589989999988997389996289979
|
| >d1lbqa_ c.92.1.1 (A:) Ferrochelatase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Chelatase-like superfamily: Chelatase family: Ferrochelatase domain: Ferrochelatase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=26779.95 Aligned_cols=1 Identities=0% Similarity=-0.260 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 k~~tgVLL~nlGtP~s~~~V~~yL~~fl~D~~vi~~p~~~~~~l~~~I~~~R~~k~a~~Y~~IgggSPL~~~t~~qa~~l 80 (356)
T d1lbqa_ 1 RSPTGIVLMNMGGPSKVEETYDFLYQLFADNDLIPISAKYQKTIAKYIAKFRTPKIEKQYREIGGGSPIRKWSEYQATEV 80 (356)
T ss_dssp CCCEEEEEEECCCCSSGGGHHHHHHHHTTCCSSSCCCSSSHHHHHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHH
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99659999878899986899999999758986446878899998656475687999999998189881089999989999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~L~~~~~~~~~~~V~~amry~~P~i~~~l~~l~~~G~~~ilvlPlyPqyS~sTt~s~~~~v~~~l~~~~~~~~~~~~~ 160 (356)
T d1lbqa_ 81 CKILDKTCPETAPHKPYVAFRYAKPLTAETYKQMLKDGVKKAVAFSQYPHFSYSTTGSSINELWRQIKALDSERSISWSV 160 (356)
T ss_dssp HHHHHHHCGGGCCEEEEEEESSSSSCHHHHHHHHHTTTCCEEEEEESCSSCCTTTHHHHHHHHHHHHHHHCTTCCSEEEE
T ss_pred HHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 98850233435772168873146320888999998579864378844234427888899999999988750102566426
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 I~~~~~~p~yI~a~a~~i~~~l~~~~~~~~~~~~LlfS~HgiP~~~~~~gdpY~~q~~~t~~~v~~~l~~~~~~~~~fQS 240 (356)
T d1lbqa_ 161 IDRWPTNEGLIKAFSENITKKLQEFPQPVRDKVVLLFSAHSLPMDVVNTGDAYPAEVAATVYNIMQKLKFKNPYRLVWQS 240 (356)
T ss_dssp ECCCTTCHHHHHHHHHHHHHHHHTSCSTTGGGCEEEEEEECCBHHHHTTTCSHHHHHHHHHHHHHHHTTTCSCEEEEEEC
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 44644312279999999999999767544567379995477653333327874689999999876430566645777640
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 r~g~~~WL~P~t~~~le~l~~g~k~v~v~p~gFvsD~lETL~Eidie~~~~~~gg~~f~~vp~lN~~p~fi~~La~lV~~ 320 (356)
T d1lbqa_ 241 QVGPKPWLGAQTAEIAEFLGPKVDGLMFIPIAFTSDHIETLHEIDLGVIGESEYKDKFKRCESLNGNQTFIEGMADLVKS 320 (356)
T ss_dssp CCSSSCBCSCBHHHHHHHHGGGCSCEEEECTTCSSCCHHHHTCCCCCCCTTCTTGGGEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 45677777875599999840489748998885242234449887777999971887499868998998999999999999
Q ss_pred -----------------------------------C
Q ss_conf -----------------------------------9
Q 000711 482 -----------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------s 482 (1338)
-
T Consensus 321 ~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (356)
T d1lbqa_ 321 HLQSNQLYSNQLPLDFALGKSNDPVKDLSLVFGNHE 356 (356)
T ss_dssp HHHHCCSSCTTHHHHHHHCCCSSCCSCHHHHSBCCC
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCC
T ss_conf 865685567446644334768871118698616899
|
| >d1jaka1 c.1.8.6 (A:151-506) beta-N-acetylhexosaminidase {Streptomyces plicatus [TaxId: 1922]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-N-acetylhexosaminidase catalytic domain domain: beta-N-acetylhexosaminidase species: Streptomyces plicatus [TaxId: 1922]
Probab=100.00 E-value=0 Score=26779.88 Aligned_cols=1 Identities=0% Similarity=-0.826 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 f~~RG~mlD~aR~f~~~~~i~~~id~ma~~K~N~lh~Hl~D~~~~r~e~~~~p~l~~~ga~~~~~~~~~~~yT~~di~~i 80 (356)
T d1jaka1 1 YAWRSAMLDVSRHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGGSTEVGGGPGGYYTKAEYKEI 80 (356)
T ss_dssp CSEEEEEEECSSSCCCHHHHHHHHHHHHTTTCCEEEEECBCSSCBCBCCTTSTHHHHTTTSCCTTSSCCCCBCHHHHHHH
T ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCEEECCCCHHHHCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 98438678767998599999999999998299079999864887610016873465436756667788885289999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 v~ya~~rgI~viPEid~PgH~~~~~~~~pel~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~v~~E~~~lfp~~~~Hi 160 (356)
T d1jaka1 81 VRYAASRHLEVVPEIDMPGHTNAALASYAELNCDGVAPPLYTGTKVGFSSLCVDKDVTYDFVDDVIGELAALTPGRYLHI 160 (356)
T ss_dssp HHHHHHTTCEEEEECCCSSSCHHHHHHCGGGSTTSCCCCCCCSCCCSCCCCCTTCHHHHHHHHHHHHHHHHTCCSSEEEC
T ss_pred HHHHHHCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99999729868644777304679987584002568998644466778865566856789999999999987515507986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 GgDE~~~~~~~~~~~f~~~~~~~v~~~gk~~~~W~e~~~~~~~~~~vV~~W~~~~~~~~~~~~~~~~~~~G~~vI~s~~~ 240 (356)
T d1jaka1 161 GGDEAHSTPKADFVAFMKRVQPIVAKYGKTVVGWHQLAGAEPVEGALVQYWGLDRTGDAEKAEVAEAARNGTGLILSPAD 240 (356)
T ss_dssp CCCCCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEGGGGGSCCCTTCEEEECCCTTSCHHHHHHHHHHHHTTCEEEECCTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCEEECCCC
T ss_conf 00244444078999999999999998599458740013678988867887730356763267999999809969977870
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~Yld~~~~~~~~~~~~w~~~~~~~~~y~~~P~~~~~~~~~~~ilG~e~~lWtE~i~~~~~~~~~~~PR~~AlAEr~Ws~ 320 (356)
T d1jaka1 241 RTYLDMKYTKDTPLGLSWAGYVEVQRSYDWDPAGYLPGAPADAVRGVEAPLWTETLSDPDQLDYMAFPRLPGVAELGWSP 320 (356)
T ss_dssp TTCTTBCSSTTCSSSBCTTCCCCHHHHHSCCGGGSSTTCCGGGEEEEEEEECCTTCCSHHHHHHHHTTHHHHHHHHHHSC
T ss_pred HHEECCCCCCCCCCCCCCCCEEEHHHEEECCCCCCCCCCCHHCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 12020366789987753345122311450366567874521056478855054777998999988775599999998688
Q ss_pred -----------------------------------C
Q ss_conf -----------------------------------9
Q 000711 482 -----------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------s 482 (1338)
+
T Consensus 321 ~~~~d~~~f~~RL~~~~~~l~~~Gv~y~r~p~~pw~ 356 (356)
T d1jaka1 321 ASTHDWDTYKVRLAAQAPYWEAAGIDFYRSPQVPWT 356 (356)
T ss_dssp GGGCCHHHHHHHHHTTHHHHHHHTCCCCCCTTSCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 867999999999999999999779980679999999
|
| >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Probab=100.00 E-value=0 Score=26779.79 Aligned_cols=1 Identities=0% Similarity=-0.227 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~p~~~~~~~~~~~~~~~~~Rl~~R~LdLR~~~~~~ilr~Rs~i~~~iR~ff~~~gfiEV~TP~L~~~~~eg~~~~~~ 80 (356)
T d1l0wa3 1 TPPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGARDFLV 80 (356)
T ss_dssp CCSSCCSSGGGTCCCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSCCCEE
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCHH
T ss_conf 96962685445654456698887413365117887999999999999999999988898999898124677764432002
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~yL~~Spel~lk~ll~~g~~~Vf~i~~~FRaE~~~t~H~~EFtmLE~e~~~~~~~~~m~~~E~li~~v~~~ 160 (356)
T d1l0wa3 81 PYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQLDLEMSFVEVEDVLELNERLMAHVFRE 160 (356)
T ss_dssp ECTTSTTEEEECCSCSHHHHHHHHHTTCSEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 22113201117772856777775232368679982123522268754045668877666788878999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~f~r~~~~~a~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~ 240 (356)
T d1l0wa3 161 ALGVELPLPFPRLSYEEAMERYGSDKPDLRREGFRFLWVVDFPLLEWDEEEEAWTYMHHPFTSPHPEDLPLLEKDPGRVR 240 (356)
T ss_dssp HTCCCCCSSCCEEEHHHHHHHHSSSSCCCSCCSCCEEEEECCBSBCCCTTTSCCCBSSCTTBCBCSTTTTHHHHCGGGCB
T ss_pred HHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHCCEEEEECCCCCCCHHHHCHHHCCCCCCE
T ss_conf 72877778977511776677870474767777566542036653113110012233437743687665100103888620
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 a~~FdL~~~G~ElanG~~r~~d~~~~~~r~~~~~~~~~~~~~~~~~yl~a~~~G~PP~~G~glGldRLlm~l~g~~~Ird 320 (356)
T d1l0wa3 241 ALAYDLVLNGVEVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIRE 320 (356)
T ss_dssp BSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHTCCTTTHHHHTHHHHHHTTBTCCCEEEEEEEHHHHHHHHHTCSSGGG
T ss_pred EEEEECCCCCEEEECCEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHCCCCCHHH
T ss_conf 21230233878862107871748999999999767832357789999999667989962377709999999809995885
Q ss_pred -----------------------------------C
Q ss_conf -----------------------------------9
Q 000711 482 -----------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------s 482 (1338)
-
T Consensus 321 vi~FPR~~~r~~p~~~~~~~~~~~~~~~~~~~~~~~ 356 (356)
T d1l0wa3 321 VIAFPKNKEGKDPLTGAPSPVPEEQLRELGLMVVRP 356 (356)
T ss_dssp GSSSCCCTTSCBTTTTBSEECCHHHHHHHTEEECCC
T ss_pred EECCCCCCCCCCCCCCCCCCCCHHHHHHCCEEECCC
T ss_conf 346899999998667899989999998668462185
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=100.00 E-value=0 Score=26779.47 Aligned_cols=1 Identities=0% Similarity=-1.456 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~ 80 (356)
T d1rkxa_ 1 INNSFWQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQP 80 (356)
T ss_dssp CCHHHHTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCHH
T ss_conf 97344188989997888779999999999779989999789986177776640146876998405685760023430202
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~y~~~k 160 (356)
T d1rkxa_ 81 EIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSK 160 (356)
T ss_dssp SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTSCBCCSSHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 44444421565653246775353322334035666643045543222222212234565433322234568988432432
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~a 240 (356)
T d1rkxa_ 161 GCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSG 240 (356)
T ss_dssp HHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTTCCEECSCTTCEECCEETHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCHHCCCCCCEEEECCCCCEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCH
T ss_conf 33204566776521342010355733774267776488855143799999999718996688621342122123342200
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~skak~~LGw~P~~~ 320 (356)
T d1rkxa_ 241 YLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLKLDCSKAKMQLGWHPRWN 320 (356)
T ss_dssp HHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------CCCCCCBCCHHHHHHHCCCCCCC
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEECHHHHHHHHCCCCCCC
T ss_conf 23455540345654444332222223322110245666787489862797179999875765686999999879986888
Q ss_pred -----------------------------------C
Q ss_conf -----------------------------------9
Q 000711 482 -----------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------s 482 (1338)
-
T Consensus 321 l~egi~~ti~wyk~~~~~~~~~~~~~~~~~~~~~~~ 356 (356)
T d1rkxa_ 321 LNTTLEYIVGWHKNWLSGTDMHEYSITEINNYMNTK 356 (356)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 999999999999998748998998999999971589
|
| >d2ebsa2 b.69.13.1 (A:431-786) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase family: Oligoxyloglucan reducing end-specific cellobiohydrolase domain: Oligoxyloglucan reducing end-specific cellobiohydrolase species: Yeast (Geotrichum sp. M128) [TaxId: 203496]
Probab=100.00 E-value=0 Score=26778.98 Aligned_cols=1 Identities=0% Similarity=-1.956 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~w~~~~~g~ee~~~~~l~spp~g~~l~s~~gd~~gf~~~dl~~p~~~~~~p~~~~~~~id~a~~~p~~ivr~G~~~~ 80 (356)
T d2ebsa2 1 WAPSWYLQIDGIEENAILSLRSPKSGAALLSGIGNISGMKHDDLTKPQKMFGAPQFSNLDSIDAAGNFPNVVVRAGSSGH 80 (356)
T ss_dssp CCCCEEECCTTCBCCBEEEEECCSSSSSEEEEESSSBCBEESCTTSCCCBCCSSCCSEEEEEEECSSCTTCEEEEEECCC
T ss_pred CCCCCEECCCCEEHHHEEEEECCCCCCCEEEEEECCCCEEECCCCCCCCCCCCCCCCCCHHEEEHHHCCCEEEEEECCCC
T ss_conf 99854576578010000015758999810688864785597458887535268885640120104118956999967788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~StDgG~TW~~~~~~~~g~~~~~~~~g~ia~s~dg~~ivw~~~~~~~~~gv~~StD~G~TW~~~~~~~~~ 160 (356)
T d2ebsa2 81 EYDSACARGAYATDGGDAWTIFPTCPPGMNASHYQGSTIAVDASGSQIVWSTKLDEQASGPWYSHDYGKTWSVPAGDLKA 160 (356)
T ss_dssp CBTTBCTTEEEESSSSSSEEECSCCCTTCSTTCCSCCEEEECTTSCCEEEECCCTTCCSCCEEESSTTSCCBCCEESCCS
T ss_pred CCCCCCCCEEEEECCHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCCEEEECCCCCCEEECCCCCCC
T ss_conf 78888872799840522442787688886566446646999458993078731467886449970797113876777888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~i~~d~~~~~~~Ya~~~g~ly~StDgG~TW~~~~~~~~~~~~~~~~v~p~~~g~v~v~~~~~Gl~~StDgG~TWt~i 240 (356)
T d2ebsa2 161 QTANVLSDKVQDGTFYATDGGKFFVSTDGGKSYAAKGAGLVTGTSLMPAVNPWVAGDVWVPVPEGGLFHSTDFGASFTRV 240 (356)
T ss_dssp CCSCEEECSSSTTCEEEEETTEEEEESSTTSEEEECCBTCCCCCCCCCEECTTSTTCEEEEETTTEEEEESSTTSBCEEE
T ss_pred CCCEEEEECCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCEEEECCCCCEEEEC
T ss_conf 73189996767965785046319994787654532256775454036888741699502112445259922776348981
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~g~~~~~~~~GvyrS~D~G~TW~~Ind~~~~~g~~~~i~~Dp~~~grvYv 320 (356)
T d2ebsa2 241 GTANATLVSVGAPKSKSDGKKASAPSAVFIWGTDKPGSDIGLYRSDDNGSTWTRVNDQEHNYSGPTMIEADPKVYGRVYL 320 (356)
T ss_dssp SSCEEEEEEEEEEC---------CCEEEEEEEESSTTSCSEEEEESSTTSSCEECCCTTSCTTCEEEEEECTTSTTCEEE
T ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCEECCCCCCCCCCEEEEECCCCCCCEEEE
T ss_conf 47888764013333566454678875599999864798076999969997934995997777752289718976998999
Q ss_pred -----------------------------------C
Q ss_conf -----------------------------------9
Q 000711 482 -----------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------s 482 (1338)
-
T Consensus 321 gT~GrGi~y~~~~~~~s~~~~~~~~~~~~~~~~~~~ 356 (356)
T d2ebsa2 321 GTNGRGIVYADLTNKKSNEEKSTAKCANGQKGTHCY 356 (356)
T ss_dssp EEBSSCEEEEECCC----CCCCEEEETTCCSSSCCC
T ss_pred EECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 968876799967788577887420127888887679
|
| >d1vbga1 c.1.12.2 (A:521-876) Pyruvate phosphate dikinase, C-terminal domain {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate phosphate dikinase, C-terminal domain domain: Pyruvate phosphate dikinase, C-terminal domain species: Maize (Zea mays) [TaxId: 4577]
Probab=100.00 E-value=0 Score=26778.46 Aligned_cols=1 Identities=0% Similarity=-0.194 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
.
T Consensus 1 ~~~~~~~~~~ad~~r~i~i~aNi~~~~e~~~a~~~gadGVGL~RtEflfl~~~~~~~~~~~~i~~p~~ee~~~~~~~~~~ 80 (356)
T d1vbga1 1 SGDLGTFMAWVDDVRKLKVLANADTPDDALTARNNGAQGIGLCRTEHMFFASDERIKAVRQMIMAPTLELRQQALDRLLP 80 (356)
T ss_dssp SCHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCCSEEEEEHHHHHTTCHHHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHCCCCEEEHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 93488999987537764899858999999999847997171777888741886304678987629999999999998788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~q~~~y~~i~~~~~g~pvtiRtlD~~~dk~lp~~~~~~~~~~l~~~~g~dk~~~~~~~~~~~E~NP~LG~RGiR~~l~~p 160 (356)
T d1vbga1 81 YQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGNIEDIVSELCAETGANQEDALARIEKLSEVNPMLGFRGCRLGISYP 160 (356)
T ss_dssp HHHHHHHHHHHHTTTSEEEEECCCSCGGGGSCCSCHHHHHHHHHHHHCCCHHHHHHHHHHHCCSCGGGSSCTHHHHHHSH
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCHHCEEEEECHHHH
T ss_conf 78999999999748996699984278776676630567999999871998024554321334688432020455010211
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~f~~ql~Ail~A~~~~~~~~~~~~~~IMiPmV~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~iGiMiEvPsaal~~d~ 240 (356)
T d1vbga1 161 ELTEMQARAIFEAAIAMTNQGVQVFPEIMVPLVGTPQELGHQVTLIRQVAEKVFANVGKTIGYKVGTMIEIPRAALVADE 240 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCCEEEEEECSCCSHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEEECSHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHH
T ss_conf 21357899999898744545756536550058763999999998887757888873066667435552357289997999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~DF~SIGTNDLtQytla~DRdn~~~~~~~y~~~~~~~~dp~~pav~~~i~~lI~~a~~~~k~~~~~i~vsiCGE~a 320 (356)
T d1vbga1 241 IAEQAEFFSFGTNDLTQMTFGYSRDDVGKFIPVYLAQGILQHDPFEVLDQRGVGELVKFATERGRKARPNLKVGICGEHG 320 (356)
T ss_dssp HTTTCSEEEECHHHHHHHHHTCCTTTGGGTHHHHHHTTSCSSCTTTSCCTTTHHHHHHHHHHHHHHHSTTCEEEEESGGG
T ss_pred HHHEEEEEEECCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 96567899953038999999861310000026888630122587547789999999999999988507999699706434
Q ss_pred -----------------------------------C
Q ss_conf -----------------------------------9
Q 000711 482 -----------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------s 482 (1338)
.
T Consensus 321 sdp~~~~~L~~lGi~~iS~sp~~ip~~k~a~aq~~~ 356 (356)
T d1vbga1 321 GEPSSVAFFAKAGLDYVSCSPFRVPIARLAAAQVLV 356 (356)
T ss_dssp GSHHHHHHHHHTTCSEEEECGGGHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHCC
T ss_conf 799999999987999899890778999999977509
|
| >d1goia2 c.1.8.5 (A:3-291,A:380-446) Chitinase B, catalytic domain {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Type II chitinase domain: Chitinase B, catalytic domain species: Serratia marcescens [TaxId: 615]
Probab=100.00 E-value=0 Score=26777.44 Aligned_cols=1 Identities=0% Similarity=-0.227 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~yy~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~lTHi~yaFa~i~~~g~~~~~~~~~~~~~~~~~~~~~~lK 80 (356)
T d1goia2 1 TRKAVIGYYFIPTNQINNYTETDTSVVPFPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALK 80 (356)
T ss_dssp CCCEEEEEEECCHHHHHTCCSSCTTTCSSCGGGSCHHHHHHCSEEEEEEEEECTTSSEECCTTCCHHHHHHHHHHHHHGG
T ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHCCEEEEEEEEECCCCCEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98579999867745767624467766776720088404752994999879977996488258765267788999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~p~lKvllSiGGW~~s~~~~~~~~~fs~~~~~~~~R~~Fi~siv~~l~~ygfDGIDIDWE~P~~~~~~~~~~l~~el~ 160 (356)
T d1goia2 81 AHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVNIDWEYPQAAEVDGFIAALQEIR 160 (356)
T ss_dssp GGCTTCEEEEEEECHHHHSTTSTTHHHHHHHTSSHHHHHHHHHHHHHHHHHHTCSEEEEECSCCCHHHHHHHHHHHHHHH
T ss_pred HHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf 87889869999837767788765543067885899999999999999999829982446420135444455336899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~d~~~l~~~vD~invMtYD~~g~w~~~tg~~spLy~~~~~p~~~~~ 240 (356)
T d1goia2 161 TLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNA 240 (356)
T ss_dssp HHHHHHHHHTTCTTSCCEEEEEEESSHHHHTTTGGGHHHHHTTCSEEEEECCCSSCTTSSSCCCTTCSSBCTTSCCBCCG
T ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCC
T ss_conf 98778888746545543058840577777752104799863215746787302367888887887745477889733212
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~vsydd~~Si~~K~~y~~~~~LgGv~iW~l~~Dd~ 320 (356)
T d1goia2 241 LREANLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFDDAESFKYKAKYIKQQQLGGVMFWHLGQDNR 320 (356)
T ss_dssp GGGSSCCCCHHHHHHHCCSSBCCCHHHHHHHHHTSTTCCGGGEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECGGGSCT
T ss_pred CCCCCCCCCHHHCCCCCCCCCCEECCHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 55444566765456566887522225899977986599843405882149999999999999957998999981488899
Q ss_pred -----------------------------------C
Q ss_conf -----------------------------------9
Q 000711 482 -----------------------------------S 482 (1338)
Q Consensus 482 -----------------------------------s 482 (1338)
-
T Consensus 321 ~gsLl~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (356)
T d1goia2 321 NGDLLAALDRYFNAADYDDSQLDMGTGLRYTGVGPG 356 (356)
T ss_dssp TCHHHHHHHHHHHCTTCCCTTCCCCSCBCCCCCCTT
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCC
T ss_conf 967999987762687899653506788154178999
|
| >d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: RmlC-like cupins family: Gentisate 1,2-dioxygenase-like domain: Gentisate 1,2-dioxygenase species: Silicibacter pomeroyi [TaxId: 89184]
Probab=100.00 E-value=0 Score=26708.55 Aligned_cols=1 Identities=0% Similarity=0.039 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~plw~~~~~~~p~~p~~~~~p~~w~~~~~~~~l~~~~~~~~~~~~~rr~~~l~np~~~~~~~ 80 (355)
T d3bu7a1 1 RDTPELEAYYDDLAKIETGALWTVANDIEPWEPTPKSAPVHWKWSDLRREVLRAIDLVRPEDAGRRVVYLRNPQRKDVSA 80 (355)
T ss_dssp CCCHHHHHHHHHHHHTTCCCGGGSCGGGSCSSCCCSSCCCEECHHHHHHHHHHHHHHSCSSCSSCCCEECCCGGGGGGTC
T ss_pred CCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHCCCHHHCCEEEEEEECCCCCCCCC
T ss_conf 98578999999998768945110046778999998862216009999999998741168311770599960798778777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~t~~l~~~~q~l~PGe~~~~HrH~~~~~~~vi~G~g~~t~v~ge~~~~~~GD~~~~P~~~~H~h~n~~~~~~~~~l~~~D 160 (355)
T d3bu7a1 81 ACGWLFSGIQTMKAGERAGAHRHAASALRFIMEGSGAYTIVDGHKVELGANDFVLTPNGTWHEHGILESGTECIWQDGLD 160 (355)
T ss_dssp SBTTBEEEEEEECTTCBCCCEEESSCEEEEEEECSCEEEEETTEEEEECTTCEEEECTTCCEEEEECTTCCCEEEEEEEC
T ss_pred CCCHHHHHEEEECCCCCCCCCCCCCCEEEEEEECCCEEEEECCEEEEEECCCEEEECCCCEEEEECCCCCCCEEEEEECC
T ss_conf 67204532076689983730115442048999898079989998877667999995899528622478997489998125
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~Pl~~~l~~~f~e~~p~~~~~~~~~~~~s~~~~~~~~~~p~~~~~~~~~sp~~~ypw~~~~~al~~~~~~~~~~~~~g~~ 240 (355)
T d3bu7a1 161 IPLTNCLEANFYEVHPNDYQTTDIPLNDSPLTYGGPALLPQLDKWDKPYSPLLKYSWEPTYEALLNYAKASDGSPYDGLI 240 (355)
T ss_dssp HHHHHHTTCCCEEECTTSSCCCCCCTTHHHHHHCSTTEEESSCCCCCSSCSCCEECHHHHHHHHHHHHTTCCCBTTTBEE
T ss_pred HHHHHHCCCEECCCCCHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEE
T ss_conf 67876326300125840014555787602455344565443456776668533366442167789898547888778559
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 l~y~nP~tg~~~~~ti~~~~~~l~pG~~~~~hrH~~~~v~~v~~G~g~~~i~g~~~~~~~GDv~~vP~~~~h~~~N~s~~ 320 (355)
T d3bu7a1 241 LRYTNPQTGGHPMLTMGASMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIVGGKRFDWSEHDIFCVPAWTWHEHCNTQER 320 (355)
T ss_dssp EEECCTTTSSCSSSSCEEEEEEECTTCBCCCEEESSCEEEEEEECCEEEEETTEEEEECTTCEEEECTTCCEEEEECCSS
T ss_pred EEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCEEEEECCEEEEEECCCEEEECCCCCEEEECCCCC
T ss_conf 99646655577752016789997899705883735707999997849999999998862899899499984785558998
Q ss_pred ----------------------------------C
Q ss_conf ----------------------------------9
Q 000711 482 ----------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------s 482 (1338)
+
T Consensus 321 e~~~Lf~~~D~P~~~~Lg~~~e~~~~~~~~~q~~~ 355 (355)
T d3bu7a1 321 DDACLFSFNDFPVMEKLGFWAEQALEDNGGHQIVA 355 (355)
T ss_dssp CCEEEEEEESHHHHHHTTCCCEEECCSTTTCCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 86899995475999876167775411047976569
|
| >d1fuia2 c.85.1.1 (A:1-355) L-fucose isomerase, N-terminal and second domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FucI/AraA N-terminal and middle domains superfamily: FucI/AraA N-terminal and middle domains family: L-fucose isomerase, N-terminal and second domains domain: L-fucose isomerase, N-terminal and second domains species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=26707.81 Aligned_cols=1 Identities=0% Similarity=-0.660 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~pkiGirp~~Dgr~~~~re~le~~t~~~ak~~a~~l~~~l~~~~g~~ve~V~~d~~i~~~~eA~~~aekf~~~~v 80 (355)
T d1fuia2 1 MKKISLPKIGIRPVIDGRRMGVRESLEEQTMNMAKATAALLTEKLRHACGAAVECVISDTCIAGMAEAAACEEKFSSQNV 80 (355)
T ss_dssp CCSCSCCEEEEEEBCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHCBCTTSCBCCEEECSSCBCSHHHHHHHHHHHHTTTE
T ss_pred CCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 98678980677853356504432038999999999999999987412689976999467516886999999999866598
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 d~~i~v~p~w~~~~~~~~~~~~~p~~vw~fn~~erpG~vgl~a~~aa~~q~Gip~~~iyg~~vqd~~d~~~p~dv~ekll 160 (355)
T d1fuia2 81 GLTITVTPCWCYGSETIDMDPTRPKAIWGFNGTERPGAVYLAAALAAHSQKGIPAFSIYGHDVQDADDTSIPADVEEKLL 160 (355)
T ss_dssp EEEEEEESSCCCHHHHSCCCSSSCEEEEECBCSSSBHHHHHHHHHHHHHHTTCCCEEEECSSCCCTTCCCCCHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHH
T ss_conf 77999825546615545314799866882689999868999999999986598734760776668754226699999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~faRAa~av~~Lrg~~ig~iG~~~mGm~~~~~d~~~l~~~fGi~ve~iDm~El~rr~e~~i~D~eEv~~Al~w~k~~~~~ 240 (355)
T d1fuia2 161 RFARAGLAVASMKGKSYLSLGGVSMGIAGSIVDHNFFESWLGMKVQAVDMTELRRRIDQKIYDEAELEMALAWADKNFRY 240 (355)
T ss_dssp HHHHHHHHHHHHTTCEEEEESSCSTTCGGGSCCHHHHHHHHCCEEEEECTHHHHHHHHTTCSCHHHHHHHHHHHHHHCEE
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEECHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 99999999998658927887785677441257999999983995278759999999974689999999999999973302
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 g~d~n~~~~~~~~~~~~e~~e~~vkm~~~~rdlm~~n~~l~~~~~~ee~~g~~aia~gfqgqr~wtd~~p~~d~~ea~LN 320 (355)
T d1fuia2 241 GEDENNKQYQRNAEQSRAVLRESLLMAMCIRDMMQGNSKLADIGRVEESLGYNAIAAGFQGQRHWTDQYPNGDTAEAILN 320 (355)
T ss_dssp CCCCSCGGGCCCHHHHHHHHHHHHHHHHHHHHHHHCCTHHHHTTCHHHHTCCCEEEEEECCTTTTTTTSCCSHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHCCCCCEEEEECCCCHHHCCCCCCHHHHHHHC
T ss_conf 41357512477776759899999999999999985081034414157656888425531245202103655107899857
Q ss_pred ----------------------------------C
Q ss_conf ----------------------------------9
Q 000711 482 ----------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------s 482 (1338)
+
T Consensus 321 s~~dwnG~rep~~~AtE~D~~~altMl~~~lLTgt 355 (355)
T d1fuia2 321 SSFDWNGVREPFVVATENDSLNGVAMLMGHQLTGT 355 (355)
T ss_dssp SSEETTEECCCCCEEETTCHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 84444787686336633340108999999875089
|
| >d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-jun N-terminal kinase (jnk3s) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=26704.22 Aligned_cols=1 Identities=0% Similarity=0.437 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~~~~~~~~~~~f~i~~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~ 80 (355)
T d2b1pa1 1 NQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIS 80 (355)
T ss_dssp CCEEEEEETTEEEEEETTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred CCCEEEEECCCCEEECCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99879995894045337759988962175859999999999989999998823369799999999999998648987648
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~f~~~~~~~~~~~~~iv~Ey~~~~l~~~~~~~~~~~~i~~~~~qil~gl~~LH~~giiHrDlKP~Nil~~~~~~~kl 160 (355)
T d2b1pa1 81 LLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKI 160 (355)
T ss_dssp CSEEECSCCSTTTCCEEEEEEECCSEEHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEE
T ss_pred EEEEEECCCCCCCCCEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 99897025643457626999841446778765038999999999999999998865221124567763211365443132
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~df~~~~~~~~~~~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~~~~~~~~~i~~~~~~~~~~ 240 (355)
T d2b1pa1 161 LDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPE 240 (355)
T ss_dssp CCCCC---------------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHH
T ss_pred ECHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHH
T ss_conf 01023211466655332214655558133147777877433356625789865989988897788999999720589879
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~Hpw~~~~~~~ 320 (355)
T d2b1pa1 241 FMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDP 320 (355)
T ss_dssp HHTTSCHHHHHHHHTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTSTTTGGGCCH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCCCCCCCCCC
T ss_conf 99876566777764175435666421264333543210133379999999999876994579089999669420878881
Q ss_pred ----------------------------------C
Q ss_conf ----------------------------------9
Q 000711 482 ----------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------s 482 (1338)
+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (355)
T d2b1pa1 321 AEVEAPPPQIYDKQLDEREHTIEEWKELIYKEVMN 355 (355)
T ss_dssp HHHTCCCC-------CCCCCCHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCC
T ss_conf 00458999877702332415999999999998629
|
| >d1luca_ c.1.16.1 (A:) Bacterial luciferase alpha chain, LuxA {Vibrio harveyi [TaxId: 669]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Bacterial luciferase-like family: Bacterial luciferase (alkanal monooxygenase) domain: Bacterial luciferase alpha chain, LuxA species: Vibrio harveyi [TaxId: 669]
Probab=100.00 E-value=0 Score=26704.20 Aligned_cols=1 Identities=0% Similarity=-1.092 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 M~fg~f~~~~~~~~~~~~~~~~~~~~~a~~ae~~Gf~~~~~~ehh~~~~~~~~~p~~~~a~~a~~T~~I~lgt~v~~~~~ 80 (355)
T d1luca_ 1 MKFGNFLLTYQPPELSQTEVMKRLVNLGKASEGCGFDTVWLLEHHFTEFGLLGNPYVAAAHLLGATETLNVGTAAIVLPT 80 (355)
T ss_dssp CEEEEEECCCCCTTCCHHHHHHHHHHHHHHTGGGTCSEEEECCCCSBTTBCCSCHHHHHHHHHHHCSSCEEEEEEEEGGG
T ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 91357668879999799999999999999999879989996235788877767999999999996791068542367887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~P~~~A~~~atLd~ls~GR~~lGig~G~~~~~~~~~G~~~~~~~~~~~E~~~il~~l~~~~~~~~~G~~~~~~~~~~~P 160 (355)
T d1luca_ 81 AHPVRQAEDVNLLDQMSKGRFRFGICRGLYDKDFRVFGTDMDNSRALMDCWYDLMKEGFNEGYIAADNEHIKFPKIQLNP 160 (355)
T ss_dssp SCHHHHHHHHHHHHHHHTSCEEEEEECCCCHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHHSEEEEESSSCEEEEEECSS
T ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 65999999998887626997146542034300343210121001101578888887520243322222344444322366
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~p~q~~~~Pi~~a~~sp~~~~~Aa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gr~~~~~~~~~~~~~~v~~~~e~A~ 240 (355)
T d1luca_ 161 SAYTQGGAPVYVVAESASTTEWAAERGLPMILSWIINTHEKKAQLDLYNEVATEHGYDVTKIDHCLSYITSVDHDSNRAK 240 (355)
T ss_dssp CCSSTTSSCEEECCCSHHHHHHHHHTTCCBEECSSSCHHHHHHHHHHHHHHHHHTTCCGGGCCCEEEEECEECSSHHHHH
T ss_pred CCCCCCCCCCCHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 43567888620120322789999985067644354203331127899999887622454333210010011467799999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGtpe~v~~~l~~~~e~~Gv 320 (355)
T d1luca_ 241 DICRNFLGHWYDSYVNATKIFDDSDQTKGYDFNKGQWRDFVLKGHKDTNRRIDYSYEINPVGTPEECIAIIQQDIDATGI 320 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-----------------------------CCSGGGGGSSEESHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHCC
T ss_conf 99999999999986421013576132125421102344555403501678887427741564899999999999997599
Q ss_pred ----------------------------------C
Q ss_conf ----------------------------------9
Q 000711 482 ----------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------s 482 (1338)
-
T Consensus 321 d~~~l~~~~~~~~~~~~~sl~lfae~V~P~lr~~~ 355 (355)
T d1luca_ 321 DNICCGFEANGSEEEIIASMKLFQSDVMPYLKEKQ 355 (355)
T ss_dssp CEEEEECGGGCSHHHHHHHHHHHHHHTGGGCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 97999788999999999999999984101124899
|
| >d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Cystathionine beta-synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=26703.69 Aligned_cols=1 Identities=0% Similarity=-2.022 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~IG~TPLv~l~~ls~~~G~~~~i~~K~E~~nptGSfKdRg 80 (355)
T d1jbqa_ 1 WIRPDAPSRCTWQLGRPASESPHHHTAPAKSPKILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRI 80 (355)
T ss_dssp CCCTTSCCCCCCCTTSCGGGCCSCCCCCCCCCSEESSGGGGSSCCCEEECCSHHHHTTCCSEEEEEEGGGSTTSBTHHHH
T ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEECCCHHHHHCCCCEEEEEECCCCCCCCHHHHH
T ss_conf 98899998865548986888997666776556410318775489973788643277599977999977889755979999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 a~~~i~~a~~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~Gi~~~iv~p~~~~~~k~~~i~~~GA~vv~v~~~~~~~~~~~ 160 (355)
T d1jbqa_ 81 SLRMIEDAERDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPES 160 (355)
T ss_dssp HHHHHHHHHHHTCSCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEECCC-------CC
T ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCEEEEECCCCCCHHHHH
T ss_conf 99999999972886667669972555400488999986257708996123168899999844976999216643101555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~t~~~EI~~ql~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~kii~vep 240 (355)
T d1jbqa_ 161 HVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDP 240 (355)
T ss_dssp HHHHHHHHHHHSTTEECCCTTTCTHHHHHHHHTHHHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 34699999973356513444576532001005650034441389998568622587037788888752487536986325
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~gs~~~~~~~~~~~~~~~~~i~gi~~~~~~~~~~~~~~~~~~~v~D~ea~~~~~~L~~~eGi~vepSsaa~laa~l~~~~ 320 (355)
T d1jbqa_ 241 EGSILAEPEELNQTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQ 320 (355)
T ss_dssp TTCSCSSSGGGGCCSCCCCSCCSCCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHHHHHSCCCBCHHHHHHHHHHHHHGG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHH
T ss_conf 67720133333322334522355456620111100120220358989999999999998095982899999999999977
Q ss_pred ----------------------------------C
Q ss_conf ----------------------------------9
Q 000711 482 ----------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------s 482 (1338)
-
T Consensus 321 ~~~~g~~VVvvlcd~G~kY~s~~~~d~~~~~~~~~ 355 (355)
T d1jbqa_ 321 ELQEGQRCVVILPDSVRNYMTKFLSDRWMLQKGFL 355 (355)
T ss_dssp GCCTTCEEEEEECBBGGGGTTTTTCHHHHHHTTCC
T ss_pred HCCCCCEEEEEECCCCCCCCCCCCCHHHHHHCCCC
T ss_conf 60896989999777976235642689999877899
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=26703.66 Aligned_cols=1 Identities=100% Similarity=-0.992 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
=
T Consensus 1 ~~p~~~tL~GH~~~vitc~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~ 80 (355)
T d1nexb2 1 FVPQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWD 80 (355)
T ss_dssp CCCEEEEEECCSSSCEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEE
T ss_pred CCCCCEEECCCCCCCEEEEEECCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCC
T ss_conf 98875888983788699999889999999189909999899993999997899988999986999999996452443211
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (355)
T d1nexb2 81 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 160 (355)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEECCCCCCCEECCCEECCCCCCCEEEEEEEC
T ss_conf 11111111110011111111111112322045543888689998567730012465200010000011234012101100
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~ 240 (355)
T d1nexb2 161 MASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ 240 (355)
T ss_dssp SSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred CCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCC
T ss_conf 22210000256334421144204443013110001100012332111111210021012456368763012211111111
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~h~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~ 320 (355)
T d1nexb2 241 GHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANI 320 (355)
T ss_dssp CCSSCCCEEEECSSEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCT
T ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCEEEEEECCEEEEEECCCCCEEEEEE
T ss_conf 11111111123210033320111111111111110001246882299998499989999809979999999997988884
Q ss_pred ----------------------------------C
Q ss_conf ----------------------------------9
Q 000711 482 ----------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------s 482 (1338)
|
T Consensus 321 ~~~~~~V~~v~~~~~~~~~~~s~dg~~~l~~~dfs 355 (355)
T d1nexb2 321 LKDADQIWSVNFKGKTLVAAVEKDGQSFLEILDFS 355 (355)
T ss_dssp TTTCSEEEEEEEETTEEEEEEESSSCEEEEEEECC
T ss_pred CCCCCCEEEEEECCCEEEEEEECCCCEEEEEEECC
T ss_conf 58999899999839919999989890999999588
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=0 Score=26701.62 Aligned_cols=1 Identities=0% Similarity=0.172 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~~p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v 80 (355)
T d2bbkh_ 1 DEPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYV 80 (355)
T ss_dssp CCCCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCEE
T ss_conf 99717476589999999982664777671999999999499999899998569948999999996777642015899989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (355)
T d2bbkh_ 81 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT 160 (355)
T ss_dssp EEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTE
T ss_pred EEEECCCCCEEEEEECCCCCEEECCCCCCEEEEECCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEECCCCC
T ss_conf 99999999798898058864031179873499933887157732798820454305788376677058740473069963
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 ~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 240 (355)
T d2bbkh_ 161 FFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEA 240 (355)
T ss_dssp EEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHH
T ss_pred EEEECCCCCEEEEEECCCCEEEEEECCCCCCEECCEEEECCCCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCC
T ss_conf 69993899989998347873799962433300011061021538997388746998299996589907998445784412
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 ~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~ 320 (355)
T d2bbkh_ 241 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST 320 (355)
T ss_dssp HHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEET
T ss_pred EEEEEEECCCEEEEEEECCCCEEEEEECCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEEEC
T ss_conf 68543303510899980799767887406871265179975999867888498996689987799992899969999978
Q ss_pred ----------------------------------C
Q ss_conf ----------------------------------9
Q 000711 482 ----------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------s 482 (1338)
-
T Consensus 321 ~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~~ 355 (355)
T d2bbkh_ 321 GDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355 (355)
T ss_dssp TTTEEEEEETTTCCEEEEECCCCSSCCEEECCCCC
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCEEEECCCC
T ss_conf 99989999999998999992869796589969999
|
| >d1iq8a1 c.1.20.1 (A:6-360) Archaeosine tRNA-guanine transglycosylase, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: tRNA-guanine transglycosylase family: tRNA-guanine transglycosylase domain: Archaeosine tRNA-guanine transglycosylase, N-terminal domain species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=26701.88 Aligned_cols=1 Identities=0% Similarity=-0.293 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000711 481 G------------------------------------------------------------------------------- 481 (1338)
Q Consensus 481 G------------------------------------------------------------------------------- 481 (1338)
-
T Consensus 1 ~m~~F~i~~~d~~AR~G~l~~~~g~i~TP~fmpv~t~~~v~~~p~~l~~~g~~iil~NtYhl~~~p~~~~~~~~gGLh~F 80 (355)
T d1iq8a1 1 KMLKFEIKARDGAGRIGKLEVNGKKIETPAIMPVVNPKQMVVEPKELEKMGFEIIITNSYIIYKDEELRRKALELGIHRM 80 (355)
T ss_dssp CCEEEEEEEEETTEEEEEEEETTEEEEESEEEEBCCSSSCSSCHHHHHHTTCCEEEEEHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEECCCCEEEEEECCEEEECCCEEEEECCCCCCCCHHHHHHHCCCEEECCCCCCCCCCCCEEEECCCCHHHH
T ss_conf 95689998611772248999699666089155654587401489999983899892111306789873443124770443
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 81 ~~w~~~ilTDSGgfQv~sl~~~~~~~e~~i~~q~~lgsDI~m~lD~~~~~~~~~~~~~~s~~rt~~~~~~~~~~~~~~~~ 160 (355)
T d1iq8a1 81 LDYNGIIEVDSGSFQLMKYGSIEVSNREIIEFQHRIGVDIGTFLDIPTPPDAPREQAVKELEITLSRAREAEEIKEIPMN 160 (355)
T ss_dssp HTCCSEEEEECSTTHHHHSSCCSSCHHHHHHHHHHTTCSBBCCCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHCCSCBB
T ss_pred HCCCCCEECCCCCCEEECCCHHHHHHHHHHEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 02789623055663121120011244566201204576179840346787777999999999999988887653205642
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 161 givqGG~~~dLR~~sa~~l~~~~~dG~aiGG~~~~~~~~~~~~~~~~i~~~~~~Lp~~kPrylmGvG~P~di~~~v~~Gi 240 (355)
T d1iq8a1 161 ATIQGSTYTDLRRYAARRLSSMNFEIHPIGGVVPLLESYRFRDVVDIVISSKMALRPDRPVHLFGAGHPIVFALAVAMGV 240 (355)
T ss_dssp CCBCCTTCHHHHHHHHHHHHHSCCSBEEECSCHHHHHTTCHHHHHHHHHHHHHHSCTTSCEEETTCCCGGGHHHHHHTTC
T ss_pred CEECCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHCC
T ss_conf 00012257317699986654178103201166765204789999998864101486336444137887567999998558
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000711 482 -------------------------------------------------------------------------------- 481 (1338)
Q Consensus 482 -------------------------------------------------------------------------------- 481 (1338)
T Consensus 241 D~FD~~~p~r~ar~g~~~t~~g~~~l~~~d~~pC~C~~C~~~srayl~HL~~~~e~~LltiHNl~~~~~l~~~iR~aI~~ 320 (355)
T d1iq8a1 241 DLFDSASYALYAKDDRYMTPEGTKRLDELDYFPCSCPVCSKYTPQELREMPKEERTRLLALHNLWVIKEEIKRVKQAIKE 320 (355)
T ss_dssp CEEEESHHHHHHHTTEEEETTEEEEGGGCSSCCCCSTTTTTCCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 96520588887640332157885235411013457852140589999976346488999999999999999999999985
Q ss_pred ----------------------------------C
Q ss_conf ----------------------------------9
Q 000711 482 ----------------------------------S 482 (1338)
Q Consensus 482 ----------------------------------s 482 (1338)
-
T Consensus 321 g~f~~~~e~~~~~~p~~~~~~~~l~~~~~~~~~~~ 355 (355)
T d1iq8a1 321 GELWRLVDERARSHPKLYSAYKRLLEHYTFLEEFE 355 (355)
T ss_dssp TCHHHHHHHHHTTCHHHHHHHHHHHHCHHHHHHHS
T ss_pred CCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999869999999999998888875019
|