Citrus Sinensis ID: 000736
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1323 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FNA4 | 1319 | Elongator complex protein | yes | no | 0.993 | 0.996 | 0.627 | 0.0 | |
| O95163 | 1332 | Elongator complex protein | yes | no | 0.817 | 0.812 | 0.287 | 1e-107 | |
| Q7TT37 | 1333 | Elongator complex protein | yes | no | 0.860 | 0.854 | 0.279 | 1e-104 | |
| Q8WND5 | 1333 | Elongator complex protein | yes | no | 0.843 | 0.837 | 0.280 | 1e-103 | |
| Q8VHU4 | 1331 | Elongator complex protein | yes | no | 0.851 | 0.845 | 0.284 | 1e-101 | |
| Q2TAQ1 | 1170 | Putative elongator comple | N/A | no | 0.736 | 0.832 | 0.281 | 2e-93 | |
| Q9VGK7 | 1252 | Putative elongator comple | yes | no | 0.812 | 0.858 | 0.258 | 8e-76 | |
| O59704 | 1253 | Elongator complex protein | yes | no | 0.808 | 0.853 | 0.245 | 1e-72 | |
| Q06706 | 1349 | Elongator complex protein | yes | no | 0.426 | 0.418 | 0.268 | 6e-49 |
| >sp|Q9FNA4|ELP1_ARATH Elongator complex protein 1 OS=Arabidopsis thaliana GN=ELP1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1663 bits (4306), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 833/1327 (62%), Positives = 1015/1327 (76%), Gaps = 12/1327 (0%)
Query: 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIK 60
M NLKL +EVP N++L S +E++QF+A DI+Q+RLFFASSAN +Y+ QLSSFQNE A K
Sbjct: 1 MKNLKLFSEVPQNIQLHSTEEVVQFAAYDIDQSRLFFASSANFVYALQLSSFQNESAGAK 60
Query: 61 TAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVR 120
+A+ E+ ID+EPGD ITAFDYL EKE+L++GTS GLLL+H+V+ + TE+VG +EGGV+
Sbjct: 61 SAMPVEVCSIDIEPGDFITAFDYLAEKESLLIGTSHGLLLVHNVESDVTELVGNIEGGVK 120
Query: 121 FISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180
ISP+P GDLLG+ TG GQ+LVMT+DW L+YE L E+ EG V E S IS
Sbjct: 121 CISPNPTGDLLGLITGLGQLLVMTYDWALMYEKALGEVPEGGYVRETNDLSVNCGGISIS 180
Query: 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAV 240
WRGDGKYFAT+ E S + K++K+WE DSG LQ+SSE K F +LEWMPSGA IAAV
Sbjct: 181 WRGDGKYFATMGEVYESGCMSKKIKIWESDSGALQSSSETKEFTQGILEWMPSGAKIAAV 240
Query: 241 YDRKSENKCPSIVFYERNGLERSSFDINEQIDST--VELLKWNCMSDLLAAVVRFEEYDS 298
Y RKS++ PSI F+ERNGLERSSF I E D+T E LKWN SDLLA VV + YD+
Sbjct: 241 YKRKSDDSSPSIAFFERNGLERSSFRIGEPEDATESCENLKWNSASDLLAGVVSCKTYDA 300
Query: 299 VKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMEN 358
+++ FFSNNHWYLK EIRY R G+ MW PTKPLQLICWTL GQ++ +F+W TAVME+
Sbjct: 301 IRVWFFSNNHWYLKQEIRYPREAGVTVMWDPTKPLQLICWTLSGQVSVRHFMWVTAVMED 360
Query: 359 STALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLC 418
STA VID SKILVTPLSLSLMPPPMYLFSL F +AV ++A+YS++SKNCLA LSDG L
Sbjct: 361 STAFVIDNSKILVTPLSLSLMPPPMYLFSLSFSSAVRDIAYYSRNSKNCLAVFLSDGNLS 420
Query: 419 VVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478
V+ PAP+ EDLEG +F VE +TA GS +HL+WL H LL VS +G H+
Sbjct: 421 FVEFPAPNTWEDLEGKDFSVEISDCKTALGSFVHLLWLDVHSLLCVSAYGSSHNKCLSSG 480
Query: 479 TLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSA 538
+ + L G Y QE+E+ C EDHV +TC+G+ A ++ Q LE V+A+A N +K+ SA
Sbjct: 481 GYDTE-LHGSYLQEVEVVCHEDHVPDQVTCSGFKASITFQTLLESPVLALAWNPSKRDSA 539
Query: 539 FLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGR 598
F++F GGK+ Y SR + + D FPS+CPW+ V V +G KPL+ GLDD GR
Sbjct: 540 FVEFEGGKVLGYASRSEIMETRSSDDSVCFPSTCPWVRVAQVDASGVHKPLICGLDDMGR 599
Query: 599 LHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTH 658
L ++GK +CNNCSSFSFYS+ A + ++HLI+ TKQ+ LFIVD D+L+G++AL F
Sbjct: 600 LSINGKNLCNNCSSFSFYSELANEVVTHLIILTKQDFLFIVDTKDVLNGDVALGNVFFVI 659
Query: 659 VGNRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALI 718
G RR EEN+SY+NIWERGAKVIGVL+GDEAAVILQT RGNLEC+YPRKLVL+SI NAL
Sbjct: 660 DGRRRDEENMSYVNIWERGAKVIGVLNGDEAAVILQTMRGNLECIYPRKLVLSSITNALA 719
Query: 719 QGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENIT 778
Q RF+DA +VRRHRI+FNVIVD GWQAFLQSA FV QVNNL+++TEFVCA+ NE++T
Sbjct: 720 QQRFKDAFNLVRRHRIDFNVIVDLYGWQAFLQSAVAFVEQVNNLNHVTEFVCAMKNEDVT 779
Query: 779 ETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPESPSRELCIL 838
ETLYKKF F S E F+ K S NKVSSVL AIRKALEE +PESPSRELCIL
Sbjct: 780 ETLYKKFSF-SKKGDEVFR------VKDSCSNKVSSVLQAIRKALEEHIPESPSRELCIL 832
Query: 839 TTLARSDPPALEEALERIKIIRETELLGS-DEPRRMSYPSAEEALKHLLWLADSEAVYEA 897
TTLARSDPPA+EE+L RIK +RE ELL S D+ R+ S PSAEEALKHLLWL DSEAV+EA
Sbjct: 833 TTLARSDPPAIEESLLRIKSVREMELLNSSDDIRKKSCPSAEEALKHLLWLLDSEAVFEA 892
Query: 898 ALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSM 957
ALGLYDLNLAAIVALNSQRDPKEFLPYLQELE MP LM + ID++LQRF++AL++IVS
Sbjct: 893 ALGLYDLNLAAIVALNSQRDPKEFLPYLQELEKMPESLMHFKIDIKLQRFDSALRNIVSA 952
Query: 958 GDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCS 1017
G Y DC+NL+KK QLFPLGL LITDP K VLEAWADHL D K FEDAATTY CC
Sbjct: 953 GVGYFPDCMNLIKKNPQLFPLGLLLITDPEKKLVVLEAWADHLIDEKRFEDAATTYLCCC 1012
Query: 1018 SLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYC 1077
LEKA KAYR G+WSGVL V L+KLGKDE+ KLA ELCEE+ ALGKP EAAKIAL+YC
Sbjct: 1013 KLEKASKAYRECGDWSGVLRVGALMKLGKDEILKLAYELCEEVNALGKPAEAAKIALEYC 1072
Query: 1078 GDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLEKVGKY 1137
D++ GISLLI+AR+WEEALRVAF+H +D I+ VK ++LECAS L+ E+KE +EKVGKY
Sbjct: 1073 SDISGGISLLINAREWEEALRVAFLHTADDRISVVKSSALECASGLVSEFKESIEKVGKY 1132
Query: 1138 LTRYLAVRQRRLLLVAKLQSEDRSMNDLDDDTVSETSSTFSGMSVYTTGTRKS-SAASIK 1196
LTRYLAVRQRRLLL AKL+SE+RS+ DLDDDT SE SS SGMS YT GTR+ +A+
Sbjct: 1133 LTRYLAVRQRRLLLAAKLKSEERSVVDLDDDTASEASSNLSGMSAYTLGTRRGSAASVSS 1192
Query: 1197 STAASKARESKRQRNRGKIRPGSPGEEMALVDHLKGMSLTVGAKQELKSLVVFLVMLGEV 1256
S A S+AR+ +RQR GKIR GS GEEMALVDHLKGM +T G K+ELKSL++ LV LGE+
Sbjct: 1193 SNATSRARDLRRQRKSGKIRAGSAGEEMALVDHLKGMRMTDGGKRELKSLLICLVTLGEM 1252
Query: 1257 DTARKLQDTGETFQLSQMAAIKLAEDTMSIDIINEHAHNMERYVQIVKLESQNSEAFSWR 1316
++A+KLQ T E FQ+SQ+AA++LA DT+S + ++E + ERY Q + +++S+AFSW
Sbjct: 1253 ESAQKLQQTAENFQVSQVAAVELAHDTVSSESVDEEVYCFERYAQKTRSTARDSDAFSWM 1312
Query: 1317 SKVFLSP 1323
KVF+SP
Sbjct: 1313 LKVFISP 1319
|
Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling and is involved in acetylation of histones H3 and probably H4 (By similarity). Promotes organs development by modulating cell division rate. Required for auxin distribution or signaling. Prevents abscisic acid (ABA) signaling leading to stomatal closure and seedling growth inhibition. Involved in oxidative stress signaling. Prevents anthocyanins accumulation. Arabidopsis thaliana (taxid: 3702) |
| >sp|O95163|ELP1_HUMAN Elongator complex protein 1 OS=Homo sapiens GN=IKBKAP PE=1 SV=3 | Back alignment and function description |
|---|
Score = 390 bits (1003), Expect = e-107, Method: Compositional matrix adjust.
Identities = 357/1242 (28%), Positives = 573/1242 (46%), Gaps = 160/1242 (12%)
Query: 59 IKTAISAEIEHIDLEPGDS-ITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEG 117
+K +S E E G I L+++E++ V T+SG ++L S+ E VG V
Sbjct: 51 VKNEVSLVAEGFLPEDGSGRIVGVQDLLDQESVCVATASGDVILCSLSTQQLECVGSVAS 110
Query: 118 GVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEE--------LAEGFDVHEPEL 169
G+ +S SPD +L+ + TG +++MT D++ + E + + + G+ E +
Sbjct: 111 GISVMSWSPDQELVLLATGQQTLIMMTKDFEPILEQQIHQDDFGESKFITVGWGRKETQF 170
Query: 170 SSS------FSF------------KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS 211
S F + ++WRGDG++FA +S C + ++++VW R+
Sbjct: 171 HGSEGRQAAFQMQMHESALPWDDHRPQVTWRGDGQFFA-VSVVCPETGA-RKVRVWNREF 228
Query: 212 GTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQI 271
LQ++SE A +G L W PSG+ IA+ D+ ++ IVF+E+NGL F +
Sbjct: 229 A-LQSTSEPVAGLGPALAWKPSGSLIASTQDKPNQQ---DIVFFEKNGLLHGHFTLPFLK 284
Query: 272 DST-VELLKWNCMSDLLAAVV---RFEEYDSVKICF----FSNNHWYLKYEIRYL---RR 320
D V L WN S +LA + + EE K C N HWYLK + + +
Sbjct: 285 DEVKVNDLLWNADSSVLAVWLEDLQREESSIPKTCVQLWTVGNYHWYLKQSLSFSTCGKS 344
Query: 321 DGIRFMWHPTKPLQLICWTLDGQITTYNFIWTT--AVMENSTAL----VIDGSKILVTPL 374
+ MW P P +L Y++ WTT +V +NS+ L VIDG+++LVT
Sbjct: 345 KIVSLMWDPVTPYRLHVLCQGWHYLAYDWHWTTDRSVGDNSSDLSNVAVIDGNRVLVTVF 404
Query: 375 SLSLMPPPMYLFSLKFPTAVTEMAFYSKSSK-NCLAAILSDGCLCVV---DLPAPDMLED 430
+++PPPM + L FP V ++ F + K N LA + + + V D P+ D
Sbjct: 405 RQTVVPPPMCTYQLLFPHPVNQVTFLAHPQKSNDLAVLDASNQISVYKCGDCPSAD---- 460
Query: 431 LEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNED------- 483
+ A G G + L H R+ F NED
Sbjct: 461 ---------PTVKLGAVGGS------GFKVCLRTPHLEKRYKIQFEN---NEDQDVNPLK 502
Query: 484 -GLLGFYAQEIELACSEDH-----VQGLLTCAG-------WHAKVSTQIPLEGLVIAIAP 530
GLL + +++ LA S V LT A VS+ ++G++I++
Sbjct: 503 LGLLTWIEEDVFLAVSHSEFSPRSVIHHLTAASSEMDEEHGQLNVSSSAAVDGVIISLC- 561
Query: 531 NNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLL 590
N+K S LQ G+I +Y+ + FP P+ + + +
Sbjct: 562 CNSKTKSVVLQLADGQIFKYLWESPSLAIKPWKNSGGFPVRFPYPCTQTELAMIGEEECV 621
Query: 591 FGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGEL- 649
GL D R ++ V +N +SF+ Y + L+L T + + D L
Sbjct: 622 LGLTDRCRFFINDIEVASNITSFAVYDE-------FLLLTTHSHTCQCFCLRDASFKTLQ 674
Query: 650 -ALKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKL 708
L + +H RK E RG++++ V+ D ++LQ RGNLE ++ R L
Sbjct: 675 AGLSSNHVSHGEVLRKVE---------RGSRIVTVVPQD-TKLVLQMPRGNLEVVHHRAL 724
Query: 709 VLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEF 768
VL I L + F++A +R+ RIN N+I DH + FL + F++Q++++++I F
Sbjct: 725 VLAQIRKWLDKLMFKEAFECMRKLRINLNLIYDH-NPKVFLGNVETFIKQIDSVNHINLF 783
Query: 769 VCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVP 828
+ E++T+T+Y P ++D + NK+ V A+R +E P
Sbjct: 784 FTELKEEDVTKTMY--------PAPVTSSVYLSRD---PDGNKIDLVCDAMRAVMESINP 832
Query: 829 ESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWL 888
L ILT+ + P LE L+++ EL G + P SAEEALK+LL L
Sbjct: 833 HKYC--LSILTSHVKKTTPELEIVLQKVH-----ELQG-NAPSDPDAVSAEEALKYLLHL 884
Query: 889 ADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFE 948
D +Y+ +LG YD +L +VA SQ+DPKE+LP+L L+ M R+TID L+R+E
Sbjct: 885 VDVNELYDHSLGTYDFDLVLMVAEKSQKDPKEYLPFLNTLKKMETNYQRFTIDKYLKRYE 944
Query: 949 NALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLE-AWADHLSDVKCFE 1007
A+ H+ G Y +CLNL+K L+ LKL + ++ Q + A+ +HL +E
Sbjct: 945 KAIGHLSKCGPEYFPECLNLIKD-KNLYNEALKLYSPSSQQYQDISIAYGEHLMQEHMYE 1003
Query: 1008 DAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPG 1067
A + C + EKA+ A+ GNW L VA L KD++ L + L +L K
Sbjct: 1004 PAGLMFARCGAHEKALSAFLTCGNWKQALCVAAQLNFTKDQLVGLGRTLAGKLVEQRKHI 1063
Query: 1068 EAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLI-TKVKHASLECASSLIGE 1126
+AA + + D + LL++ WEEALR+ + + R D+I T VK + LE +
Sbjct: 1064 DAAMVLEECAQDYEEAVLLLLEGAAWEEALRLVYKYNRLDIIETNVKPSILEAQKN---- 1119
Query: 1127 YKEGLEKVGKYLTRYLAVRQRRLLLVAKLQSEDRSMNDLDD--------DTVSETSSTFS 1178
Y L+ +R+ ++RLL+V +L+ E LDD D SETSS S
Sbjct: 1120 YMAFLDSQTATFSRH----KKRLLVVRELK-EQAQQAGLDDEVPHGQESDLFSETSSVVS 1174
Query: 1179 GMSVYTTGTRKSSAASIKSTAASKARESKRQRNRGKIRPGSP 1220
G + + K S ++ + +A S K +R + ++ GSP
Sbjct: 1175 GSEM----SGKYSHSNSRISARSSKNRRKAERKKHSLKEGSP 1212
|
Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling and is involved in acetylation of histones H3 and probably H4. Homo sapiens (taxid: 9606) |
| >sp|Q7TT37|ELP1_MOUSE Elongator complex protein 1 OS=Mus musculus GN=Ikbkap PE=2 SV=2 | Back alignment and function description |
|---|
Score = 379 bits (974), Expect = e-104, Method: Compositional matrix adjust.
Identities = 365/1304 (27%), Positives = 599/1304 (45%), Gaps = 165/1304 (12%)
Query: 56 RASIKTAISAEIEHIDLEPGDS-ITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGR 114
R +KT IS E E G I L+++E++ V T+SG +++ ++ E VG
Sbjct: 48 RREVKTEISLVAEGFLPEDGSGCIVGIQDLLDQESVCVATASGDVIVCNLSTQQLECVGS 107
Query: 115 VEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPL--EELAEG----------- 161
V G+ +S SPD +LL + T +++MT D++++ E + ++ EG
Sbjct: 108 VASGISVMSWSPDQELLLLATAQQTLIMMTKDFEVIAEEQIHQDDFGEGKFVTVGWGSKQ 167
Query: 162 ------------FDVHEPELSSSFSFKSP-ISWRGDGKYFATLSEFCNSSKLHKRLKVWE 208
F V PE + + + P I+WRGDG+YFA +S C ++ K ++VW
Sbjct: 168 TQFHGSEGRPTAFPVQLPENALPWDDRRPHITWRGDGQYFA-VSVVCRQTEARK-IRVWN 225
Query: 209 RDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN 268
R+ LQ++SE +G L W PSG+ IA+ D+ ++ +VF+E+NGL F +
Sbjct: 226 REFA-LQSTSESVPGLGPALAWKPSGSLIASTQDKPNQQ---DVVFFEKNGLLHGHFTLP 281
Query: 269 EQIDST-VELLKWNCMSDLLAAVVR-FEEYDS------VKICFFSNNHWYLKYEIRYL-- 318
D V L WN S +LA + + DS V++ N HWYLK + +
Sbjct: 282 FLKDEVKVNDLLWNADSSVLAIWLEDLPKEDSSTLKSYVQLWTVGNYHWYLKQSLPFSTT 341
Query: 319 -RRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTA------LVIDGSKILV 371
+ + +W P P +L + ++ WTT ++A VIDG+++LV
Sbjct: 342 GKNQIVSLLWDPVTPCRLHVLCTGWRYLCCDWHWTTDRSSGNSANDLANVAVIDGNRVLV 401
Query: 372 TPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDL 431
T +++PPPM + L P V ++ F + + L V+D
Sbjct: 402 TVFRQTVVPPPMCTYRLLIPHPVNQVIFSAHLGND----------LAVLD---------- 441
Query: 432 EGTEFVVEACISETAFGSVIHLIWLGSH---LLLSVSHHGPRHSNYFRGAT--------- 479
+ V C + S + L +G + + L+ H R+S F
Sbjct: 442 ASNQISVYKCGDKPNMDSTVKLGAVGGNGFKVPLTTPHLEKRYSIQFGNNEEEEEEEVNA 501
Query: 480 --------LNEDGLLGFYAQE---------IELACSE-DHVQGLLTCAGWHAKVSTQIPL 521
+ +D L + + SE D QG L VS+ + +
Sbjct: 502 LQLSFLTWVEDDTFLAISYSHSSSQSIIHHLTVTHSEVDEEQGQL-------DVSSSVTV 554
Query: 522 EGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFP----SSCPWMNV 577
+G+VI + +K S +Q G++ +Y+ + P C M V
Sbjct: 555 DGVVIGLC-CCSKTKSLAVQLADGQVLKYLWESPSLAVEPWKNSEGIPVRFVHPCTQMEV 613
Query: 578 VSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLF 637
++G + + GL D R ++ V +N +SF+ L++ T +
Sbjct: 614 ATIGG----EECVLGLTDRCRFFINDTEVASNITSFAVCD-------DFLLVTTHSHTCQ 662
Query: 638 IVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNR 697
+ +S +LK G+ I + ERG++++ V+ D +ILQ R
Sbjct: 663 VFSLSGA-----SLKMLQAALSGSHEASGEI--LRKVERGSRIVTVVPQD-TKLILQMPR 714
Query: 698 GNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVR 757
GNLE ++ R LVL I L + F++A +R+ RIN N+I DH + FL++ FV+
Sbjct: 715 GNLEVVHHRALVLAQIRKWLDKLMFKEAFECMRKLRINLNLIHDH-NPKVFLENVETFVK 773
Query: 758 QVNNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLL 817
Q++++++I F + E++T+T+Y P + + D K K+ +
Sbjct: 774 QIDSVNHINLFFTELREEDVTKTMYPP------PITKSVQVSTHPDGK-----KLDLICD 822
Query: 818 AIRKALEEKVPESPSRELC--ILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSY 875
A+R A+E P R+ C ILT+ + P LE L++++ EL G + P
Sbjct: 823 AMRAAMEAINP----RKFCLSILTSHVKKTTPELEIVLQKVQ-----ELQG-NLPFDPES 872
Query: 876 PSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLL 935
S EEALK+LL L D ++ +LG YD NL +VA SQ+DPKE+LP+L L+ M
Sbjct: 873 VSVEEALKYLLLLVDVNELFNHSLGTYDFNLVLMVAEKSQKDPKEYLPFLNTLKKMETNY 932
Query: 936 MRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI-TDPAKMEQVLE 994
R+TID L+R+E AL H+ G Y +CLNL+K L+ LKL D + + V
Sbjct: 933 QRFTIDKYLKRYEKALGHLSKCGPEYFTECLNLIKD-KNLYKEALKLYRPDSPQYQAVSM 991
Query: 995 AWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQ 1054
A+ +HL +E A + C + EKA++A+ A G+W L VA L++ KD+VA LA+
Sbjct: 992 AYGEHLMQEHLYEPAGLVFARCGAQEKALEAFLACGSWQQALCVAAQLQMSKDKVAGLAR 1051
Query: 1055 ELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLI-TKVK 1113
L +L K EAA + Y D + LL++ WEEALR+ + + R D+I T VK
Sbjct: 1052 TLAGKLVEQRKHSEAATVLEQYAQDYEEAVLLLLEGSAWEEALRLVYKYDRVDIIETSVK 1111
Query: 1114 HASLECASSLIGEYKEGLEKVGKYLTRYLAVRQRRLLLVAKLQSEDRSMNDLDDDTVSET 1173
+ LE + + ++ R VR R ++ + + + D SET
Sbjct: 1112 PSILEAQKNYMDFLDSETATFIRHKNRLQVVRALR-RQAPQVHVDHEVAHGPESDLFSET 1170
Query: 1174 SSTFSGMSVYTTGTRKSSAASIKSTAASKARESKRQRNRGKIRPGSPGEEMALVDHLKGM 1233
SS SG + R S + S S +SK R K +R + ++ GSP E +AL++ L +
Sbjct: 1171 SSIMSGSEM---SGRYSHSNSRISARSSKNRR-KAERKKHSLKEGSPLEGLALLEALSEV 1226
Query: 1234 SLTVGA-KQELKSLVVFLVMLGEVDTARKLQDTGE-TFQLSQMA 1275
+V K E+++++ L + + A++LQ E T QL + A
Sbjct: 1227 VQSVEKLKDEVRAILKVLFLFEFEEQAKELQRAFESTLQLMERA 1270
|
Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling and is involved in acetylation of histones H3 and probably H4. Mus musculus (taxid: 10090) |
| >sp|Q8WND5|ELP1_RABIT Elongator complex protein 1 OS=Oryctolagus cuniculus GN=IKBKAP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust.
Identities = 357/1274 (28%), Positives = 596/1274 (46%), Gaps = 158/1274 (12%)
Query: 78 ITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGF 137
I L+++E++ + T+SG ++L ++ + E VG V G+ +S SPD +L+ + TG
Sbjct: 71 IVGIQDLLDQESVCIATASGDVILCNLSTHQLECVGSVASGISVMSWSPDQELVLLATGQ 130
Query: 138 GQILVMTHDWDLLYENPLEEL---------------------AEG----FDVHEPELSSS 172
+++MT D++ + E + + +EG F + E +
Sbjct: 131 QTLIMMTKDFEPIMEQQIHQDDFGESKFITVGWGKKETQFHGSEGRQAAFQIQTHESALP 190
Query: 173 FSFKSP-ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM 231
+ P ++WRGDG++FA +S C + ++++VW R+ LQ++SE +G L W
Sbjct: 191 WDDHRPRVTWRGDGQFFA-VSVVCPETGA-RKVRVWNREFA-LQSTSEPVPGLGPALAWK 247
Query: 232 PSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDST-VELLKWNCMSDLLAAV 290
PSG+ IA+ ++ ++ +VF+E+NGL F + D V L WN S +LA
Sbjct: 248 PSGSLIASTQNKPNQQ---DVVFFEKNGLLHGQFTLPFLKDEVKVNDLLWNADSSVLAVW 304
Query: 291 VR--FEEYDSV-----KICFFSNNHWYLKYEI---RYLRRDGIRFMWHPTKPLQLICWTL 340
+ E DSV ++ N HWYL + Y + + MW P P +L
Sbjct: 305 LEDLQREEDSVLKTYVQLWTVGNYHWYLNECLPFSTYGKSKIVSLMWDPVIPYRLHVLCQ 364
Query: 341 DGQITTYNFIWTT--AVMENSTAL----VIDGSKILVTPLSLSLMPPPMYLFSLKFPTAV 394
Y++ WTT + +N + L VIDG++ILVT +++PPPM + L P V
Sbjct: 365 GWHYLCYDWRWTTDRSSGDNESDLANVAVIDGNRILVTVFQQTVVPPPMCTYRLLLPHPV 424
Query: 395 TEMAFYSKSSK-NCLAAILSDGCLCVV---DLPAPD---MLEDLEGTEFVVEACI----- 442
++ F + K N LA + + + V D P+ D L + G F V
Sbjct: 425 NQVTFCALPKKSNDLAVLDASNQISVYKCGDSPSMDPTVKLGAVGGNGFKVSLRTPHLEK 484
Query: 443 -----------SETAFGSVIHLIWLGSHLLLSVSHH--GPRHSNYFRGATLNEDGLLGFY 489
ET + L W+ + L++ H P+ S R +
Sbjct: 485 RYKIQFESNEDQETNPLKLSLLSWIEEDIFLAICHSQCSPQQSVIHRLTVV--------- 535
Query: 490 AQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISE 549
C D QG L+ VS+ I ++G++I++ N+K S LQ G+I +
Sbjct: 536 ------PCEVDEEQGQLS-------VSSSISVDGIIISMC-CNSKTKSVALQLADGQILK 581
Query: 550 YMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNN 609
Y+ + FP P+ + + + + GL D R ++ V +N
Sbjct: 582 YIWESPSLAVEPWKNPGGFPIQFPYPCIQTELAMIGGEECVLGLTDRCRFFINDTEVASN 641
Query: 610 CSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENIS 669
+SF+ Y + L+L T + + D L + +HV N +
Sbjct: 642 ITSFAVYDE-------FLLLTTHSHTCQCYCLKDASIKTLQAGLSS-SHVSNGEILRKV- 692
Query: 670 YINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMV 729
ERG++++ V+ D +ILQ RGNLE ++ R LVL I L + F++A +
Sbjct: 693 -----ERGSRIVTVVPQD-TKLILQMPRGNLEVVHHRALVLAQIRKWLDKIMFKEAFECM 746
Query: 730 RRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENITETLYKKFQFLS 789
R+ RIN N+I DH + FLQ+ F+RQ++ +++I F + E++T+T+Y
Sbjct: 747 RKLRINLNLIHDH-NPEVFLQNVETFIRQIDCVNHINLFFTELKEEDVTKTMYPP----P 801
Query: 790 LPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPAL 849
+P + P K+ + A+R A+E P L ILT+ + P L
Sbjct: 802 VPSSVQQSRDPGG-------TKLDLICDALRVAMENINPHKYC--LPILTSHVKKTTPEL 852
Query: 850 EEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAI 909
E L+++ EL G + P SAEEALK+LL L D +Y+ +LG YD +L +
Sbjct: 853 EIVLQKVH-----ELQG-NAPSDPDAVSAEEALKYLLLLVDVNELYDHSLGTYDFDLVLM 906
Query: 910 VALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLM 969
VA SQ+DPKE+LP+L L+ M R+TID L+R+E A+ H+ G Y ++CLNL+
Sbjct: 907 VAEKSQKDPKEYLPFLNTLKKMETNYQRFTIDKYLKRYEKAIGHLSKCGPEYFSECLNLI 966
Query: 970 KKYAQLFPLGLKLITDPAK-MEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRA 1028
K L+ LKL ++ + + A+ +HL + +E A + C + EKA+ A+
Sbjct: 967 KD-KNLYNEALKLYPPTSQEYKDISIAYGEHLMEEHQYEPAGLVFARCGAHEKALSAFLT 1025
Query: 1029 SGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLI 1088
G+W L +A L + ++++A L + L +L K +AA + Y D + LL+
Sbjct: 1026 CGSWQQTLCMAAQLNMTEEQLAGLGRTLAGKLAEQRKHSDAAIVLEQYTQDYEEAVLLLL 1085
Query: 1089 DARDWEEALRVAFMHRREDLI-TKVKHASLECASSLIGEYKEGLEKVGKYLTRYLAVRQR 1147
+ WEEALR+ + + R D+I T +K + LE + Y LE +R+ +
Sbjct: 1086 EGAAWEEALRLVYKYNRLDIIETNIKPSILEAYKN----YMAFLESQSATFSRH----KE 1137
Query: 1148 RLLLVAKLQSEDRSMNDLDD--------DTVSETSSTFSGMSVYTTGTRKSSAASIKSTA 1199
RLL V +L+ + + DLDD D SETSS SG + + K S ++ + +A
Sbjct: 1138 RLLEVRELKERAQQV-DLDDEMPHGQEADLFSETSSIVSGSEM----SSKYSHSNSRISA 1192
Query: 1200 ASKARESKRQRNRGKIRPGSPGEEMALVDHLKGMSLTVGA-KQELKSLVVFLVMLGEVDT 1258
S K +R + ++ GSP E++AL++ L + ++ K E+ ++ L + +
Sbjct: 1193 RSSKNRRKAERKKHSLKEGSPLEDLALLEALNEVVQSLDKLKDEVYRILKVLFLFEFDEQ 1252
Query: 1259 ARKLQDT-GETFQL 1271
R+LQ T +T QL
Sbjct: 1253 GRELQKTFQDTLQL 1266
|
Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling and is involved in acetylation of histones H3 and probably H4. Oryctolagus cuniculus (taxid: 9986) |
| >sp|Q8VHU4|ELP1_RAT Elongator complex protein 1 OS=Rattus norvegicus GN=Ikbkap PE=2 SV=1 | Back alignment and function description |
|---|
Score = 370 bits (949), Expect = e-101, Method: Compositional matrix adjust.
Identities = 372/1307 (28%), Positives = 604/1307 (46%), Gaps = 181/1307 (13%)
Query: 56 RASIKTAISAEIEHIDLEPGDS-ITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGR 114
+ +KT IS E E G I L+++E++ V T+SG +++ +V E VG
Sbjct: 48 KKEVKTEISLVAEGFLPEDGSGCIVGIQDLLDQESVCVATASGDVIVCNVSTQQLECVGN 107
Query: 115 VEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPL--EELAEG----------- 161
V G+ +S SPD +LL + T +++MT D++++ E + ++ EG
Sbjct: 108 VASGISVMSWSPDQELLLLATAQQTLIMMTRDYEVITEQQIHQDDFGEGKFITVGWGSKD 167
Query: 162 ------------FDVHEPELSSSFSFKSP-ISWRGDGKYFATLSEFCNSSKLHKRLKVWE 208
F V E + S+ P I+WRGDG++FA +S C+ + ++++VW
Sbjct: 168 TQFHGSEGRPITFPVQMHESALSWDDHRPQITWRGDGQFFA-VSVVCSQTGA-RKIRVWN 225
Query: 209 RDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN 268
R+ LQ++SE +G L W PSG+ IA+ D+ ++ +VF+E+NGL F +
Sbjct: 226 REFA-LQSTSESVPGLGPSLAWKPSGSLIASTQDKPNQQ---DVVFFEKNGLLHGYFTLP 281
Query: 269 EQIDST-VELLKWNCMSDLLAAVVRFEEYDS---------VKICFFSNNHWYLKYEIRYL 318
D V L WN S +LA V E+ V++ N HWYLK + +
Sbjct: 282 FLKDEVKVNDLLWNADSSVLA--VWLEDLPKEGSSTLKSYVQLWTVGNYHWYLKQSLPFS 339
Query: 319 ---RRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTA------LVIDGSKI 369
+ + +W P P +L + ++ WTT ++A VIDG+K+
Sbjct: 340 TTGKNQIVSLLWDPVTPGRLHVLCQGWRYLCCDWHWTTDRSSGNSADDLANVAVIDGNKV 399
Query: 370 LVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP-APDM- 427
LVT ++ PPPM + L P V ++ S N LA + + + V PDM
Sbjct: 400 LVTVFQRTVTPPPMCTYRLLIPHPVNQV-MSSAHLGNDLAVLDASNQISVYKCDDKPDMD 458
Query: 428 ----LEDLEGTEFVV--------------------EACISETAFGSVIHLIWLGSHLLLS 463
L + GT F V E +S F L W+ L+
Sbjct: 459 STVKLGAVGGTGFKVPLRTPHLEKRYRIQFGNKEEEEDVSPLQFR---FLTWIEGDAFLA 515
Query: 464 VSH-HGPRHSNYFRGATLNEDGLLGFYAQEIELACSE-DHVQGLLTCAGWHAKVSTQIPL 521
+SH H S + +A SE D QG L VS+ + +
Sbjct: 516 ISHSHSSPQS----------------IIHHLTMAGSEGDEEQGQLN-------VSSSVTV 552
Query: 522 EGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDD----ASFPSSCPWMNV 577
+G+VI + + K SA +Q G++ +Y+ + + F C M
Sbjct: 553 DGVVIGLCCCSKTKSSA-VQLADGQVLKYLWESPSSAVEPWKNSEGRPVRFARPCTQMEA 611
Query: 578 VSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLF 637
++G + + GL D R ++ V +N +SF+ L++ T +
Sbjct: 612 AAIGG----EECVLGLTDRCRFFINDTEVASNITSFAVCD-------DFLLVTTHSHTCQ 660
Query: 638 IVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNR 697
+S +LK G++ I + ERG++++ V+ D +ILQ R
Sbjct: 661 CFSLSGA-----SLKMLQAGLCGSQVPSGEI--LRKVERGSRIVTVVPQD-TKLILQMPR 712
Query: 698 GNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVR 757
GNLE ++ R LVL I L + F++A +R+ RIN N+I DH + FL++ F++
Sbjct: 713 GNLEVVHHRALVLAQIRKWLDKLMFKEAFECMRKLRINLNLIHDH-NPKVFLENVETFIK 771
Query: 758 QVNNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLL 817
Q+++++++ F + E++T+T+Y P + + D K KV +
Sbjct: 772 QIDSVNHLNLFFTELKEEDVTKTMYPP------PVTKSVQVSTNPDGK-----KVDLICD 820
Query: 818 AIRKALEEKVPESPSRELC--ILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSY 875
A+R A+E P R+ C ILT+ + P L+ L+++ EL G P
Sbjct: 821 AMRVAMETINP----RKFCLSILTSHVKKTTPELDIVLQKVH-----ELQGKI-PFVPES 870
Query: 876 PSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLL 935
SAEEALK+LL L D ++ +LG YD +L +VA SQ+DPKE+LP+L L+ M
Sbjct: 871 VSAEEALKYLLLLVDVNELFNHSLGTYDFDLVLMVAEKSQKDPKEYLPFLNTLKKMETNY 930
Query: 936 MRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI-TDPAKMEQVLE 994
R+TID L+R+E AL H+ G Y +CLNL+K L+ LKL D + + V
Sbjct: 931 QRFTIDKYLKRYEKALGHLSKCGPEYFTECLNLIKD-KNLYKEALKLYRPDSPQYQAVSV 989
Query: 995 AWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQ 1054
A+ +HL +E A + C + EKA++A+ A G+W L +A L++ KD+VA LA+
Sbjct: 990 AYGEHLVQELLYEPAGLVFARCGAHEKALEAFLACGSWQQALCMAAQLQMAKDKVAGLAR 1049
Query: 1055 ELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLI-TKVK 1113
L +L K EAA + Y D + LL++ WEEALR+ + + R D+I T VK
Sbjct: 1050 TLAGKLVEQRKHSEAATVLEQYALDYEEAVLLLLEGSAWEEALRLVYKYDRVDIIETSVK 1109
Query: 1114 HASLECASSLIGEYKEGLEKVGKYLTRYLAVRQRRLLLVAKLQSEDRSM-------NDLD 1166
+ LE + Y + L+ R+ + RL +V +L+S+ + + +
Sbjct: 1110 PSILEAQKN----YMDFLDSQTATFIRH----KNRLKVVRELKSQRPRVHVDHEVAHGRE 1161
Query: 1167 DDTVSETSSTFSGMSVYTTGTRKSSAASIKSTAASKARESKRQRNRGKIRPGSPGEEMAL 1226
D SETSS SG + R S + S S +SK R K +R + ++ GSP E +AL
Sbjct: 1162 TDLFSETSSIRSGSEM---SGRYSHSNSRISARSSKNRR-KAERKKHSLKEGSPLEGLAL 1217
Query: 1227 VDHLKGMSLTVGA-KQELKSLVVFLVMLGEVDTARKLQDTGE-TFQL 1271
++ L + ++ K E+ +++ L + + AR+LQ E T QL
Sbjct: 1218 LEALSEVVQSIEKLKDEVHAILKVLFLFEFEEQARELQRAFESTLQL 1264
|
Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling and is involved in acetylation of histones H3 and probably H4. Rattus norvegicus (taxid: 10116) |
| >sp|Q2TAQ1|ELP1_XENLA Putative elongator complex protein 1 OS=Xenopus laevis GN=ikbkap PE=2 SV=1 | Back alignment and function description |
|---|
Score = 345 bits (884), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 303/1075 (28%), Positives = 501/1075 (46%), Gaps = 101/1075 (9%)
Query: 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA 235
K I+WRGDG+ FA +S C S ++++VW R+ LQ++SE + L W PSGA
Sbjct: 46 KPRITWRGDGQLFA-VSSVCKESGT-RKIRVWNRELA-LQSTSESIEGLEQALSWKPSGA 102
Query: 236 NIAAVYDRKSENKCPSIVFYERNGLERSSFDI---NEQIDSTVELLKWNCMSDLLAAVVR 292
IA+ + +++ S++F+E+NGL F + QI V+ L WN S +LA +
Sbjct: 103 LIASSQSKPNKH---SVIFFEKNGLVHGEFTLPFTKGQI--KVKELLWNSDSTILAIWLE 157
Query: 293 FEEYDS------VKICFFSNNHWYLKYEIRYLRRDGIR---FMWHPTKPLQLICWTLDGQ 343
E D V++ N HWYLK + + + + MW P +L ++
Sbjct: 158 DNEKDESSSGCCVQLWTVGNYHWYLKQSLNFGTDEMKKIECLMWDPENAYRLHVFSTGWH 217
Query: 344 ITTYNFIWTTAVMENSTA--LVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYS 401
+++ W T + VIDG K+LVT +++PPPM + ++ AV E+ F
Sbjct: 218 YFCFDWFWGTDHSDGGQGDVAVIDGDKVLVTSFQQAVVPPPMSTYFIQLSCAVNEVTFQL 277
Query: 402 KSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLL 461
+ KN AIL + + + D V +S F + L L
Sbjct: 278 EPKKNSGIAILDSTNILSIYRYGNSTVND----PTVKLGAVSGNGFRTSSQTPKLEKKLR 333
Query: 462 LSVSHHGPRHS-----NYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVS 516
L PR++ FR T +D +QE + S H G V
Sbjct: 334 L------PRNACDVQLRSFRLLTWVQDDTFLAVSQESNSSISTVHHMNTDQMDGQDINVR 387
Query: 517 TQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHD----DASFPSSC 572
+ G +I++ + K+ A LQ GKI +Y+ D + FP C
Sbjct: 388 DVGTITGHIISLCYSPNTKHCA-LQTSNGKIWKYLCEYPTPAVEPWIDSMGQEVKFPQPC 446
Query: 573 PWMNVVSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATK 632
+ S+ + ++ GL + RL ++ V +N +SF Y + L+L T
Sbjct: 447 VQTALASIEG----EDMVIGLTERSRLFINNSEVASNITSFHLYEE-------FLLLTTH 495
Query: 633 QNLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAAVI 692
+ V + D L + N N I ERG+++I V+ D +I
Sbjct: 496 SHTCRCVSLRDTSLKALETQL-------NSASNPNDETIRKVERGSRIITVVPCD-TKLI 547
Query: 693 LQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSA 752
LQ RGNLE ++ R LVL I L + F++A +R+ RIN N++ DH +AFL +
Sbjct: 548 LQMPRGNLETIHHRALVLAQIRKWLDRLLFKEAFECMRKLRINLNLLYDHNP-KAFLDNV 606
Query: 753 SEFVRQVNNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKV 812
F++Q+ +++YI F+ I E++T+T+Y ++ E ++ KV
Sbjct: 607 DLFIKQIGSVNYINLFLTEIKEEDVTKTMYPTHALSTMQSSE-----------GAKAKKV 655
Query: 813 SSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDEPRR 872
V A+R A+E+ P+ L ILT+ R P LE AL+++ +RE+
Sbjct: 656 DIVCDAVRAAMEKWDPQKFC--LSILTSYVRRTIPQLEIALQKVHELRESP--------S 705
Query: 873 MSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMP 932
+ SA+EALK+LL+L D +Y+ +LG YD +L +VA SQ+DPKE+LP+L +L+ M
Sbjct: 706 TTIVSADEALKYLLFLVDVNELYDHSLGTYDFDLVVMVAEKSQKDPKEYLPFLNKLKKME 765
Query: 933 PLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYA------QLFPLGLKLITDP 986
RYTID L+R++ AL ++ G Y + L+ +K + +L+P G
Sbjct: 766 TNYQRYTIDKHLKRYKKALSNLSKCGPDYFTEFLSFVKDQSLYTEALELYPHG------T 819
Query: 987 AKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGK 1046
+ + + A+ DHL + +E A Y C+S+EKA+ A+ ASGNW V+ +A L+
Sbjct: 820 VEYKAINAAYGDHLVSKQQYELAGLIYARCNSIEKALDAFIASGNWHQVMCMASQLEYSG 879
Query: 1047 DEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRRE 1106
+++A LA+ + +L K +AA + Y D I LL++ WEEALR+ + + R
Sbjct: 880 EKIAALARTVAGKLVEQRKQADAAVLLEQYAEDYEEAILLLLEGAHWEEALRLIYKYIRL 939
Query: 1107 DLI-TKVKHASLECASSLIGEYKEGLEKVGKYLTRYLAVRQRRLLLVAKLQSEDRSMNDL 1165
D++ T +K A L+ + + + ++ R VR+ + L ED +
Sbjct: 940 DILETNLKPALLDAQRNHMILFDNQKTTFTRHKERLSVVREMKEKARLGLLDEDVT-GCA 998
Query: 1166 DDDTVSETSSTFSGMSVYTTGTRKSSAASIKSTAASKARESKRQRNRGKIRPGSP 1220
+ D S+TSS + + + K S ++ + ++ S K +R + ++ GSP
Sbjct: 999 EADLFSDTSSIMTA----SDASGKYSQSNSRISSRSSKNRRKAERKKHSLKEGSP 1049
|
Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Xenopus laevis (taxid: 8355) |
| >sp|Q9VGK7|ELP1_DROME Putative elongator complex protein 1 OS=Drosophila melanogaster GN=Elp1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 286 bits (732), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 342/1321 (25%), Positives = 571/1321 (43%), Gaps = 246/1321 (18%)
Query: 1 MNNLKL--CAEV-----PLNLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQ 53
M NLKL C E+ P +L LQ + L A DI +F + N IY+ Q
Sbjct: 1 MRNLKLRYCKELNAVAHPQHLLLQPE---LNGGASDI-----YFVVADNKIYAVQ----- 47
Query: 54 NERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVG 113
E ++ + A++ I ++L A+ V + +G ++L AT
Sbjct: 48 -ESGDVRLKVIADLP--------DIVGVEFLQLDNAICVASGAGEVILVDPQTGATSEGT 98
Query: 114 RVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLE-EL-------------- 158
+ G+ ++ SP+ +++ T +++MT +D++ E PL+ EL
Sbjct: 99 FCDVGIESMAWSPNQEVVAFVTRTHNVVLMTSTFDVIAEQPLDAELDPDQQFVNVGWGKK 158
Query: 159 ------AEG------------FDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKL 200
+EG F E EL+ S ISWRGDG++F +++L
Sbjct: 159 ETQFHGSEGKQAAKQKESDSTFIRDEQELNQDVS----ISWRGDGEFFVV---SYVAAQL 211
Query: 201 HKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL 260
+ KV++ + G L ++E A + + W P+G IA ++ NK +I +E+NGL
Sbjct: 212 GRTFKVYDSE-GKLNHTAEKSANLKDSVVWRPTGNWIAV--PQQFPNKS-TIALFEKNGL 267
Query: 261 ERSS----FDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIR 316
FD+ E+ V L+W+ SD+LA +E V + N HWYLK +
Sbjct: 268 RHRELVLPFDLQEE---PVVQLRWSEDSDILAIRTCAKEEQRVYLYTIGNYHWYLKQVLI 324
Query: 317 YLRRDGIRFMWHPTKPLQLICW-TLDGQITTYNFI----------WTTAVMENSTAL-VI 364
+ + D PL L+ W T G T + + W AV N++ + VI
Sbjct: 325 FEQAD----------PLALLHWDTRCGAEHTLHVLKESGKHLVYRWAFAVDRNNSIVGVI 374
Query: 365 DGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSK----NCLAAILSDGCLCVV 420
DG ++L+T +++PPPM LKF T + AF S + C I + + +
Sbjct: 375 DGKRLLLTDFDEAIVPPPMSKIVLKFETYIN--AFISHGTSLWVYTCDRKIYLNEHIHTL 432
Query: 421 --DLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478
+L P ML + +A +S ++ H H LL+ +H + +
Sbjct: 433 GKELQKPIML--------MPDAELSGLHLANLTHF---SPHYLLA-THSSAGSTRLLLLS 480
Query: 479 TLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLV--IAIAP------ 530
+ D G W +V + + + GLV +A+AP
Sbjct: 481 YKDNDNKPG----------------------EWFYRVHSSVRINGLVNAVAVAPYAMNEF 518
Query: 531 -----NNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGP 585
NN Y L+ E S V L A D C W G G
Sbjct: 519 YVQTVNNGHTYEVSLKADKTLKVE-RSYVQLHEPA-DQIDWVIVKGCIWD-----GYTGA 571
Query: 586 LKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDIL 645
L L + LH+ G + + +SF +++ ++ T+ N + V + D
Sbjct: 572 L----VTLRNQHLLHIDGYRIGEDVTSFC--------VVTNYLVYTQLNAMHFVQLDD-- 617
Query: 646 HGELALKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYP 705
RR+ ++ NI ERGAK++ + +A V+LQ RGNLE + P
Sbjct: 618 ----------------RRQ---VASRNI-ERGAKIVTAV-ARKARVVLQLPRGNLEAICP 656
Query: 706 RKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYI 765
R LVL + + L +G+++ A+ M R+ RIN N+I DH + F+ S F+ +N ++
Sbjct: 657 RVLVLELVGDLLERGKYQKAIEMSRKQRINLNIIFDH-DVKRFVSSVGAFLNDINEPQWL 715
Query: 766 TEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEE 825
F+ + NE+ T+ +Y S K D++ + KV V + LE+
Sbjct: 716 CLFLSELQNEDFTKGMYSSNYDAS-------KQTYPSDYRVDQ--KVEYVC----RLLEQ 762
Query: 826 KVPESPSRELCILTTLARSDPPALEEALERI-KIIRETELLGSDEPRRMSYPSAEEALKH 884
++ SR L T A LE AL+ I K +E L A++ L+H
Sbjct: 763 QMNRFVSRFRLPLIT-AYVKLGCLEMALQVIWKEQQEDASL------------ADQLLQH 809
Query: 885 LLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRL 944
LL+L D +Y ALG YD L VA SQ+DPKEFLPYL +L+++P ++ ID L
Sbjct: 810 LLYLVDVNDLYNVALGTYDFGLVLFVAQKSQKDPKEFLPYLNDLKALPIDYRKFRIDDHL 869
Query: 945 QRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQ-VLEAWADHLSDV 1003
+R+ +AL H+ + G+ ++ + L ++K+ L+ GL + + ++ + A+ADHL +
Sbjct: 870 KRYTSALSHLAACGEQHYEEALEYIRKHG-LYTDGLAFYREHIEFQKNIYVAYADHLRAI 928
Query: 1004 KCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQAL 1063
++A+ Y L++A+ + + + +W VL +A L D+V AQ L LQ
Sbjct: 929 AKLDNASLMYERGGQLQQALLSAKHTLDWQRVLVLAKKLSEPLDQV---AQSLVGPLQQQ 985
Query: 1064 GKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSL 1123
G+ EA ++ ++C D +L++ + A+ A + +D+ K+ A L L
Sbjct: 986 GRHMEAYELVKEHCQDRKRQFDVLLEGHLYSRAIYEAGL-EDDDVSEKIAPALLAYGVQL 1044
Query: 1124 IGEYKEGLEKVGKYLTRYLAVRQRRLLLVAKLQSEDRSMNDLD--DDTVSETSSTFSGMS 1181
+ L+ Y R L +R+ + D ++ ++D DT S SS +SG S
Sbjct: 1045 ESSLQADLQLFLDYKQRLLDIRRNQAKSGEGYIDTDVNLKEVDLLSDTTSLHSSQYSGTS 1104
Query: 1182 VYTTGTRKSSAASIKSTAASKARESKRQRNRGKIRPGSPGEEMALVDHLKGMSLTVGAKQ 1241
T T +SS K +R ++PG+P E++AL+D L + +Q
Sbjct: 1105 RRTGKTFRSS-----------KNRRKHERKLFSLKPGNPFEDIALIDALHNHVTKIAQQQ 1153
Query: 1242 E 1242
+
Sbjct: 1154 Q 1154
|
Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Drosophila melanogaster (taxid: 7227) |
| >sp|O59704|ELP1_SCHPO Elongator complex protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=iki3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 276 bits (705), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 306/1248 (24%), Positives = 537/1248 (43%), Gaps = 179/1248 (14%)
Query: 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE----VVGRVEGGVRFISPSPDGDLL 131
D I + +L E A+ + G +++ VD + E ++G VE G+ S D +
Sbjct: 74 DEIQSMQFLGEPMAICLSLKGGDIVMVKVDPSPEEAPWEIIGNVENGIVASCWSTDEQVF 133
Query: 132 GVTTGFGQILVMTHDWDLLYENPLEE---------------------------------- 157
+ TG IL MT ++D++ E L +
Sbjct: 134 CIITGGDTILFMTKNFDIISETSLSDADLNEFNKHISVGWGRSETQFRGKRVRAKLRDPT 193
Query: 158 LAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHK----RLKVWERDSGT 213
L E D E +LS K+ I WRGD +Y + ++L K ++V+ R+ G
Sbjct: 194 LPEKID--EGKLSDVDDGKTYICWRGDSQYVSI-------NRLEKGPRRAIRVYSRE-GL 243
Query: 214 LQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDS 273
L + SE + ++L W PSG+ +A + S+N ++F+ERNGL F + + D
Sbjct: 244 LDSISEPQDGQQSLLSWKPSGSVLATIKSDSSDNSS-KVIFFERNGLRHGEFSLRRREDE 302
Query: 274 TVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPL 333
L WN S +LA +SV + N HWYLK EI + I WHP
Sbjct: 303 KYTGLAWNVSSSILAVSTE----NSVMLWTTGNYHWYLKKEINIPQNALIS--WHPEHAN 356
Query: 334 QLICWT---LDGQITTYNFIWTTAVMENSTAL--VIDGSKILVTPLSLSLMPPPMYLFSL 388
L ++ + ++ + N L VIDGS +LVTPLSL +PPPM + L
Sbjct: 357 TLYITGKNHIEKVVFDLKYVTEFSTSPNDFGLIPVIDGSSLLVTPLSLCNIPPPMCRYKL 416
Query: 389 KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFG 448
V +M + +S AA D L + + + EF + F
Sbjct: 417 SLDYNV-QMTSINATSDMLFAA--DDRRLTAFTFNSQEDIAKF--GEFDISTYAEGLNFK 471
Query: 449 SVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTC 508
S++ L G+ +LL G + + F +ED + ++L SE +L
Sbjct: 472 SLLGLS--GNQVLLLAD--GTNNCSKFFVFQCDEDN------ESLKLLASESFESCILN- 520
Query: 509 AGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASF 568
A + +++ F Q GK+ Y L ++ SF
Sbjct: 521 ASYCSEM----------------------LFFQTSSGKLISY----NLNVKSIESISLSF 554
Query: 569 PSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLI 628
P C + V V + P+ GL GRL+ +++ SF + ++
Sbjct: 555 PKPCS--DFVVVPVHETFVPI--GLTSYGRLYAEQRLLSTGVLSFFCTER-------FVL 603
Query: 629 LATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDE 688
T +NLL V L ++ V + + + + ERG+K++ + +
Sbjct: 604 FTTTKNLLKFV--------HLVSTVDDLQVVEDDAVDRHDERCRVVERGSKIVASMPS-K 654
Query: 689 AAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAF 748
AV+LQ RGNLE +YPR +VL + + ++ DA + R HR++ N++ D+ F
Sbjct: 655 MAVVLQMPRGNLETIYPRIMVLDGVRTYIKALKYGDAFKVCRTHRLDLNILFDY-DPDLF 713
Query: 749 LQSASEFVRQVNNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASE 808
L++ FV + + Y+ F+ ++ EN+T +Y + ++ +
Sbjct: 714 LKNIPVFVDGLYRVDYLDLFLTSLKPENVTTGMYS-----------DTSKSQSQQSVTTI 762
Query: 809 CNKVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSD 868
NKV+ + IR+ L K ++ + I+T+ PP +E AL I + + +
Sbjct: 763 DNKVNLLCKIIREHLTSKYGDTHFQ--AIITSYLCESPPKIEAALGMISGLIKAQ----- 815
Query: 869 EPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQEL 928
+ + A++H+ +L D +++ ALGLYDL LA ++A SQ+DP+E++P+L E
Sbjct: 816 ------SETVDLAIEHMCFLVDVNMLFDHALGLYDLKLALLIAQQSQKDPREYVPFLHEF 869
Query: 929 ESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLIT-DPA 987
+ L ++ ID L+R+E AL H+ M +++ D +L+P L+L D
Sbjct: 870 QKQESLRRKFNIDCYLKRYERALGHLKEMENAF--DEFKNFTIQHKLYPRALELYKYDKE 927
Query: 988 KMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKD 1047
++VL +A +L + +AA Y + +A++AY+++G W L++ +D
Sbjct: 928 AQKEVLIIFAQYLRENGKSNEAAIAYESVGKISEAIEAYKSAGMWRECLSILQQTTNSED 987
Query: 1048 EVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRR-- 1105
+ + A++L + +A I L Y + + + + EA+R+A
Sbjct: 988 LIRETAEDLASLCIEKREHCDAGSINLLYLSNPREAVIQMCKGSQYSEAIRIARATGDSS 1047
Query: 1106 --EDLITKVKHASLECASSLIGEYKEGLEKVGKYLTRYLAVRQRRLLLVAKLQSEDR--- 1160
+DL+ V S AS L+ +++ ++ + R+L++ + + ED
Sbjct: 1048 IYKDLLISVLGESFGEASELVADFRNQIKS-----------QTERILVLREKKKEDPISW 1096
Query: 1161 ---SMNDLDDDTVSETSSTFS-GMSVYTTGTRKSSAASIKSTAASKARESKRQRNRGKIR 1216
+M D D +S S++ S S+YT T+ S+++ + + R +R+R RGK
Sbjct: 1097 MEGTMEDQTPDDISLASTSLSTNRSLYTQYTKSSNSSKMTRNTSKNNRRLERKRARGK-- 1154
Query: 1217 PGSPGEEMALVDHLKGMSLTVGA-KQELKSLVVFLVMLGEVDTARKLQ 1263
G+ EE LV+ L+ + V + E+ L+ LV A +LQ
Sbjct: 1155 KGTVFEEEYLVNSLRRLIARVEEIRPEVHRLLEALVRCNMTTQASELQ 1202
|
Acts as component of the RNA polymerase II elongator complex, which is a major histone acetyltransferase component of the RNA polymerase II (RNAPII) holoenzyme and is involved in transcriptional elongation. Association with elongating RNAPII requires a hyperphosphorylated state of the RNAPII C-terminal domain (CTD). Elongator binds to both naked and nucleosomal DNA, can acetylate both core and nucleosomal histones, and is involved in chromatin remodeling. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q06706|ELP1_YEAST Elongator complex protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IKI3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 197 bits (500), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 167/622 (26%), Positives = 303/622 (48%), Gaps = 58/622 (9%)
Query: 591 FGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELA 650
FG+ + G+L + ++ + +S S L+ T Q+ L V ++ L
Sbjct: 645 FGITNNGKLFANQVLLASAVTSLEITD-------SFLLFTTAQHNLQFVHLNSTDFKPLP 697
Query: 651 LKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVL 710
L E ++E + I ERG+ ++ V+ +++V+LQ RGNLE +YPR +VL
Sbjct: 698 LVEEGV-------EDERVRAI---ERGSILVSVIPS-KSSVVLQATRGNLETIYPRIMVL 746
Query: 711 TSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVC 770
+ ++ R+++A ++ R HRIN +++ D+ + F+++ F+ Q+ + Y+ F+
Sbjct: 747 AEVRKNIMAKRYKEAFIVCRTHRINLDILHDYAP-ELFIENLEVFINQIGRVDYLNLFIS 805
Query: 771 AINNENITETLYKK---------FQFLSLPCREEFKDLPAKDF--KASECNKVSSVLLAI 819
++ +++T+T YK+ F P E + K F K S+ NK+ +L +
Sbjct: 806 CLSEDDVTKTKYKETLYSGISKSFGMEPAPLTEMQIYMKKKMFDPKTSKVNKICDAVLNV 865
Query: 820 RKALEEKVPESPSREL-CILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSA 878
+ PE + L I+T A +P L AL+ I +EL S+E
Sbjct: 866 LLS----NPEYKKKYLQTIITAYASQNPQNLSAALKLI-----SELENSEE--------K 908
Query: 879 EEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRY 938
+ + +L +L D VY++AL LYD++LA +VA SQ DP+E+LP+LQEL+ PL ++
Sbjct: 909 DSCVTYLCFLQDVNVVYKSALSLYDVSLALLVAQKSQMDPREYLPFLQELQDNEPLRRKF 968
Query: 939 TIDLRLQRFENALKHI--VSMGDSYHADCLNLMKKYAQLFPLGLKLIT-DPAKMEQVLEA 995
ID L +E AL+H+ + + + ++ ++ + L+ GL L D K +
Sbjct: 969 LIDDYLGNYEKALEHLSEIDKDGNVSEEVIDYVESH-DLYKHGLALYRYDSEKQNVIYNI 1027
Query: 996 WADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQE 1055
+A HLS + + DAA Y L++AM AY+++ W +++A ++ +EV +A+E
Sbjct: 1028 YAKHLSSNQMYTDAAVAYEMLGKLKEAMGAYQSAKRWREAMSIA--VQKFPEEVESVAEE 1085
Query: 1056 LCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHA 1115
L L + +AA I L+Y +V ++L A ++ A VA ++++L+ +V
Sbjct: 1086 LISSLTFEHRYVDAADIQLEYLDNVKEAVALYCKAYRYDIASLVAIKAKKDELLEEVVDP 1145
Query: 1116 SLECASSLIGEYKEGLE-KVGKYLTRYLAVRQRRLLLVAKLQSEDRSMNDLDDDTVSETS 1174
L +I E + ++ L R +R ++ ++ D SETS
Sbjct: 1146 GLGEGFGIIAELLADCKGQINSQLRRLRELRAKKEENPYAFYGQETEQADDVSVAPSETS 1205
Query: 1175 STFSGMSVY---TTGTRKSSAA 1193
+ S + Y T GT K+ A+
Sbjct: 1206 TQESFFTRYTGKTGGTAKTGAS 1227
|
Acts as component of the RNA polymerase II elongator complex, which is a major histone acetyltransferase component of the RNA polymerase II (RNAPII) holoenzyme and is involved in transcriptional elongation. Association with elongating RNAPII requires a hyperphosphorylated state of the RNAPII C-terminal domain (CTD). Elongator binds to both naked and nucleosomal DNA, can acetylate both core and nucleosomal histones, and is involved in chromatin remodeling. It acetylates histones H3, preferentially at 'Lys-14', and H4, preferentially at 'Lys-8'. It functions as a gamma-toxin target (TOT); disruption of the complex confers resistance to Kluyveromyces lactis toxin zymocin (pGKL1 killer toxin). May also be involved in sensitiviy to Pichia inositovora toxin. May be involved in tRNA modification. Independently, ELP3 may be involved in polarized exocytosis. It is required for the polarized localization of GTPase-activating protein SEC2. Is required for an early step in synthesis of 5-methoxycarbonylmethyl (mcm5) and 5-carbamoylmethyl (ncm5) groups present on uridines at the wobble position in tRNA. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1323 | ||||||
| 225449591 | 1316 | PREDICTED: elongator complex protein 1 [ | 0.992 | 0.997 | 0.731 | 0.0 | |
| 224109568 | 1326 | predicted protein [Populus trichocarpa] | 0.997 | 0.995 | 0.705 | 0.0 | |
| 255575094 | 1335 | conserved hypothetical protein [Ricinus | 0.993 | 0.984 | 0.707 | 0.0 | |
| 224100935 | 1340 | predicted protein [Populus trichocarpa] | 0.996 | 0.984 | 0.695 | 0.0 | |
| 147843466 | 1533 | hypothetical protein VITISV_010008 [Viti | 0.961 | 0.829 | 0.699 | 0.0 | |
| 449483884 | 1317 | PREDICTED: elongator complex protein 1-l | 0.993 | 0.998 | 0.658 | 0.0 | |
| 449449974 | 1317 | PREDICTED: elongator complex protein 1-l | 0.993 | 0.998 | 0.657 | 0.0 | |
| 297811479 | 1317 | aba-overly sensitive 1 [Arabidopsis lyra | 0.991 | 0.996 | 0.628 | 0.0 | |
| 15240688 | 1319 | elongator complex protein 1 [Arabidopsis | 0.993 | 0.996 | 0.627 | 0.0 | |
| 125600729 | 1339 | hypothetical protein OsJ_24750 [Oryza sa | 0.990 | 0.979 | 0.554 | 0.0 |
| >gi|225449591|ref|XP_002279262.1| PREDICTED: elongator complex protein 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1977 bits (5122), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 969/1324 (73%), Positives = 1117/1324 (84%), Gaps = 11/1324 (0%)
Query: 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIK 60
MNNLKL +++ LNLEL+S +E++ FSA DIE+NRL FASS N IY+ QL S QNER K
Sbjct: 1 MNNLKLYSDLSLNLELRSAEEVVSFSAFDIERNRLVFASSDNFIYTTQLPSSQNERVWGK 60
Query: 61 TAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVR 120
T+ +++E IDLEPGD ITAFDYLMEKEALIVGTSSGLLLLH+VD NA EVVGRVEGGV+
Sbjct: 61 TSSYSKVEPIDLEPGDFITAFDYLMEKEALIVGTSSGLLLLHNVDDNAIEVVGRVEGGVK 120
Query: 121 FISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180
ISPSPDGDLLG+ TGFGQI+VMTHDWD+LYEN L++L E D+ EP SS + IS
Sbjct: 121 CISPSPDGDLLGIITGFGQIVVMTHDWDVLYENTLDDLPEDVDLSEPTFSSCY-----IS 175
Query: 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAV 240
WRGDGKYF TL E SS HK+LKVWERD+G L A+SE KAFMG VL+WMPSGA IA+V
Sbjct: 176 WRGDGKYFVTLGELHTSSS-HKKLKVWERDTGALHAASESKAFMGTVLDWMPSGAKIASV 234
Query: 241 YDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVK 300
YD+K EN+CP IVF+ERNGLERSSF INE D+ VE+LKWNC SDLLAAVVR E +DSVK
Sbjct: 235 YDKKVENECPLIVFFERNGLERSSFSINELTDAKVEILKWNCSSDLLAAVVRSETFDSVK 294
Query: 301 ICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENST 360
I FFSNNHWYLK EIRYLR DG++FMWHPTKPLQLICWTL G++T +F+W TAVMENST
Sbjct: 295 IWFFSNNHWYLKQEIRYLREDGVKFMWHPTKPLQLICWTLGGEVTVNSFVWVTAVMENST 354
Query: 361 ALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVV 420
ALVID SKIL TPLSLSLMPPPMYLF+LKF + + ++AFY+K+SKN LAA LSDGCLCV
Sbjct: 355 ALVIDESKILATPLSLSLMPPPMYLFNLKFSSTIRDIAFYTKNSKNLLAAFLSDGCLCVA 414
Query: 421 DLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATL 480
+LP D E+LEG E V+A SET FGS +HLIWL +H+LL VSH G HSNYF
Sbjct: 415 ELPPLDTWEELEGKELSVDASSSETIFGSFVHLIWLDAHILLGVSHFGFSHSNYFSQTPS 474
Query: 481 NEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFL 540
++D L G+Y QEIEL CSEDHV GL TC+GWHAK++ QIPL+GLVI +APN KK SAF+
Sbjct: 475 SKDMLHGYYLQEIELLCSEDHVPGLGTCSGWHAKITNQIPLDGLVIGLAPNPTKKCSAFV 534
Query: 541 QFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLH 600
QF GGK+ EY+ +G+ GA +D S SSCPWM+VV VG +G +PLLFGLDD GRLH
Sbjct: 535 QFDGGKVFEYIPNLGIMEGAPKTEDMSLSSSCPWMSVVPVGDSGSSRPLLFGLDDNGRLH 594
Query: 601 VSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVG 660
V GKI+CNNC SFSFYS SA A++HLILATKQ+LLF++DI DIL G+L +KYENF H G
Sbjct: 595 VGGKIICNNCRSFSFYSNSADLAITHLILATKQDLLFVIDIDDILDGKLEVKYENFIHAG 654
Query: 661 NRRKEE-NISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQ 719
N+R+EE N ++I IWERGAKVIGVLHGDEAAVILQT RGNLEC+YPRKLVL SI+NAL+Q
Sbjct: 655 NKRREEDNRNFITIWERGAKVIGVLHGDEAAVILQTARGNLECIYPRKLVLASIINALVQ 714
Query: 720 GRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENITE 779
RFRD L+MVRRHRI+FNVIVDHCGWQAFLQSA+EFVRQVNNLSYITEFVC+I NE ITE
Sbjct: 715 SRFRDGLLMVRRHRIDFNVIVDHCGWQAFLQSAAEFVRQVNNLSYITEFVCSIKNETITE 774
Query: 780 TLYKKFQFLSLPCREEFKDLPAKDFKA-SECNKVSSVLLAIRKALEEKVPESPSRELCIL 838
TLYK ++SL C E KD+ A DFK + NKVSSVL++IRKALEE+VPESP+RELCIL
Sbjct: 775 TLYK--NYISLLCLREAKDVQAGDFKGPNNNNKVSSVLMSIRKALEEQVPESPARELCIL 832
Query: 839 TTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAA 898
TTLARSDPPALEEALERIK+IRE ELLGSD+PRR SYPSAEEALKHLLWL+DSEAVYEA+
Sbjct: 833 TTLARSDPPALEEALERIKLIREMELLGSDDPRRKSYPSAEEALKHLLWLSDSEAVYEAS 892
Query: 899 LGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMG 958
LGLYDL+LAAIVALNSQRDPKEFLP+LQELE MP LMRY ID+RL+R+E+ALKHI S G
Sbjct: 893 LGLYDLHLAAIVALNSQRDPKEFLPFLQELERMPVHLMRYNIDIRLRRYESALKHIASAG 952
Query: 959 DSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSS 1018
D+Y+ADCLNLMK+ QLFPLGL+LITDPAK ++VLEAW DH SD KCFEDAATTY CCS
Sbjct: 953 DAYYADCLNLMKENPQLFPLGLQLITDPAKKKEVLEAWGDHFSDEKCFEDAATTYLCCSG 1012
Query: 1019 LEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG 1078
LEKA+KAYRA GNW GV+TVAGLLKLGK+E+ +LA ELCEELQALGKPGEAAKIALDYCG
Sbjct: 1013 LEKALKAYRACGNWGGVMTVAGLLKLGKEEIVQLANELCEELQALGKPGEAAKIALDYCG 1072
Query: 1079 DVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLEKVGKYL 1138
DV + I+LL+ ARDWEEALRVAFMHR +DLI++V++ASLECA+ LIGEY+EGLEKVGKYL
Sbjct: 1073 DVKSAINLLVSARDWEEALRVAFMHRCDDLISEVQNASLECATLLIGEYEEGLEKVGKYL 1132
Query: 1139 TRYLAVRQRRLLLVAKLQSEDRSMNDLDDDTVSETSSTFSGMSVYTTGTRKSSAASIKST 1198
RYLAVRQRRLLL AKLQSEDRS+NDLDDDT SE SS+FSGMS YTTGTRK SAASI S+
Sbjct: 1133 ARYLAVRQRRLLLAAKLQSEDRSINDLDDDTASEASSSFSGMSAYTTGTRKGSAASISSS 1192
Query: 1199 AASKARESKRQRNRGKIRPGSPGEEMALVDHLKGMSLTVGAKQELKSLVVFLVMLGEVDT 1258
ASK R +RQRNRGKIR GSPGEEMALV+HLKGM LT GA++ELKSL+V LV+LG+ +
Sbjct: 1193 TASKGRGMRRQRNRGKIRAGSPGEEMALVEHLKGMYLTPGAERELKSLLVSLVVLGKEEM 1252
Query: 1259 ARKLQDTGETFQLSQMAAIKLAEDTMSIDIINEHAHNMERYVQIVKLESQNSEAFSWRSK 1318
A+KLQ TGE FQLSQMAA+KLAEDTM D I+E+A+ +E Y+Q ++ E Q S+AF WRSK
Sbjct: 1253 AKKLQRTGEAFQLSQMAAVKLAEDTMPNDNIDEYAYTLENYIQKLRNE-QQSDAFVWRSK 1311
Query: 1319 VFLS 1322
V LS
Sbjct: 1312 VLLS 1315
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224109568|ref|XP_002315239.1| predicted protein [Populus trichocarpa] gi|222864279|gb|EEF01410.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1916 bits (4963), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 938/1329 (70%), Positives = 1094/1329 (82%), Gaps = 9/1329 (0%)
Query: 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIK 60
M NLKL E+ NLELQS E++ FSA DIE+NRLFFASSAN IY+A LSSFQN + S
Sbjct: 1 MKNLKLYREISQNLELQSLQEVILFSAFDIERNRLFFASSANIIYTAHLSSFQNGK-SKG 59
Query: 61 TAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVR 120
+ +EI I+LE GD ITAFDYLMEKEALI+GT +GLLLLH++D N+TE+VG+VEGGV+
Sbjct: 60 LLLPSEINQIELEDGDLITAFDYLMEKEALIIGTENGLLLLHNIDDNSTEIVGQVEGGVK 119
Query: 121 FISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEE---LAEGFDVHEPELSSSFSFKS 177
ISPSPDGDLL + TGF Q+LVMTHDWDLLYE +EE +G DV + + S F S
Sbjct: 120 CISPSPDGDLLAILTGFRQVLVMTHDWDLLYEIAVEEKENYGDGLDVRKGQPFSLNMFGS 179
Query: 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANI 237
ISWRGDGKYFAT+SE SS L K++KVWERDSG L ++S+ K FMGAVLEWMPSGA I
Sbjct: 180 FISWRGDGKYFATISEASESSALLKKIKVWERDSGALHSTSDSKVFMGAVLEWMPSGAKI 239
Query: 238 AAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYD 297
AAVYDRK EN+CP I FYERNGL RSSF I E D+TVE LKWNC SDL+A+VVR E+YD
Sbjct: 240 AAVYDRKVENRCPDIAFYERNGLVRSSFSIKEAADATVESLKWNCGSDLVASVVRCEKYD 299
Query: 298 SVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVME 357
+VK+ F SNNHWYLK+E+RY R+DG+R MW P KPLQLICWT GQIT YNF W +AV E
Sbjct: 300 AVKLWFLSNNHWYLKHEVRYSRQDGVRLMWDPVKPLQLICWTFGGQITIYNFTWISAVTE 359
Query: 358 NSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCL 417
NSTALVID SKILVTPLSLSLMPPP++LFSLKFP+AV ++A YS +SKN +AA LSDG L
Sbjct: 360 NSTALVIDDSKILVTPLSLSLMPPPLHLFSLKFPSAVRDLALYSNNSKNRVAAFLSDGSL 419
Query: 418 CVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRG 477
VV+LP PD EDLE EF VEA ISET FGS ++L WL SH+LL+VSH+G HSN
Sbjct: 420 GVVELPDPDTWEDLEEKEFTVEASISETGFGSFVNLTWLDSHILLAVSHYGFSHSNCASH 479
Query: 478 ATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYS 537
+++ EDGL GF QEIEL CSEDHV L+T +GWHAK+S + LEGLVI IAPN AKK S
Sbjct: 480 SSMGEDGLSGFCLQEIELLCSEDHVPSLVTGSGWHAKISHRNYLEGLVIGIAPNPAKKRS 539
Query: 538 AFLQFHGGKISEYMSRVGL--TGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDD 595
AF+QF GG I EY S +GL TGG+ HDD SF SSCPWM+V +G LKPLLFGLDD
Sbjct: 540 AFVQFDGGNIVEYTSMLGLAVTGGSTKHDDMSFSSSCPWMSVAKASDSGSLKPLLFGLDD 599
Query: 596 GGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYEN 655
GRLH GK++CNNCSSFS YS A Q ++HLIL+TKQ+ LF+V+I DILHGE+ LKYEN
Sbjct: 600 IGRLHFGGKVLCNNCSSFSCYSNLADQVVTHLILSTKQDFLFVVEIGDILHGEIELKYEN 659
Query: 656 FTHVGNRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVN 715
F H GNRRKEEN+++INIWERGAK+IGVLHGD+AAVI+QT RGNLE ++PRKLVL SIVN
Sbjct: 660 FVHTGNRRKEENMNFINIWERGAKIIGVLHGDDAAVIIQTTRGNLESIHPRKLVLASIVN 719
Query: 716 ALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNE 775
ALIQ RFRDAL++VRRHRI+FNVIVD+CGWQ FLQSASEFV+QVNNLSYITEF+C+I NE
Sbjct: 720 ALIQRRFRDALLLVRRHRIDFNVIVDYCGWQTFLQSASEFVKQVNNLSYITEFICSIKNE 779
Query: 776 NITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLL-AIRKALEEKVPESPSRE 834
NI ETLYK ++S PC+ D+ AKD + + + S LL AIRK LEE+V ESP+RE
Sbjct: 780 NIMETLYK--NYISTPCQNRAGDVQAKDVVSFDSSSKVSSLLLAIRKGLEEQVTESPARE 837
Query: 835 LCILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAV 894
LCILTTLARSDPP LEEAL+RIK+IRE ELLGS +PRR SYPSAEEALKHLLWL+DS+AV
Sbjct: 838 LCILTTLARSDPPMLEEALKRIKVIREMELLGSSDPRRTSYPSAEEALKHLLWLSDSDAV 897
Query: 895 YEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHI 954
+EAALGLYDLNLAAIVA+NSQRDPKEFLPYLQELE MP L+M Y IDLRL ++E AL+HI
Sbjct: 898 FEAALGLYDLNLAAIVAVNSQRDPKEFLPYLQELERMPSLVMCYNIDLRLHQYEKALRHI 957
Query: 955 VSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYF 1014
VS GD+Y++DC++LM K QLFPLGL++ITDPAK QVLEAW DHLSD KCFEDAA TY
Sbjct: 958 VSAGDAYYSDCMSLMNKNPQLFPLGLQMITDPAKKMQVLEAWGDHLSDEKCFEDAAITYL 1017
Query: 1015 CCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIAL 1074
CCSSL+ A+KAYRA G+WSGVLTVAGLLKL KDE+ +LA +LCEELQALGKPGEAAKIAL
Sbjct: 1018 CCSSLKNALKAYRACGDWSGVLTVAGLLKLEKDELMQLAHDLCEELQALGKPGEAAKIAL 1077
Query: 1075 DYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLEKV 1134
+YCGDV +GI+LLI ARDWEEALRVAFMHR+EDL+ +VK+A+L+CAS+LI E+KEGLEKV
Sbjct: 1078 EYCGDVNSGINLLISARDWEEALRVAFMHRQEDLVLEVKNAALDCASTLISEHKEGLEKV 1137
Query: 1135 GKYLTRYLAVRQRRLLLVAKLQSEDRSMNDLDDDTVSETSSTFSGMSVYTTGTRKSSAAS 1194
GKYLTRYLAVRQRRLLL AKLQSE+RS+NDLDDDTVSE SS FSGMS YTTGTRK SAAS
Sbjct: 1138 GKYLTRYLAVRQRRLLLAAKLQSEERSINDLDDDTVSEASSNFSGMSAYTTGTRKGSAAS 1197
Query: 1195 IKSTAASKARESKRQRNRGKIRPGSPGEEMALVDHLKGMSLTVGAKQELKSLVVFLVMLG 1254
+ S+ SKAR+ +RQR RGKIRPGSP EE+ALV+HLKGMSLT GAK EL+SL+ LV LG
Sbjct: 1198 VTSSVTSKARDMRRQRKRGKIRPGSPDEELALVEHLKGMSLTAGAKNELRSLLFTLVKLG 1257
Query: 1255 EVDTARKLQDTGETFQLSQMAAIKLAEDTMSIDIINEHAHNMERYVQIVKLESQNSEAFS 1314
+ ARKLQ GE FQL+QMAA+KLAEDT+S DIINE AH +E +++ ++ E N + FS
Sbjct: 1258 GEEIARKLQLAGENFQLTQMAAVKLAEDTISTDIINEKAHTLEHFIRKMRSELLNLDYFS 1317
Query: 1315 WRSKVFLSP 1323
WRSKVF+SP
Sbjct: 1318 WRSKVFISP 1326
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255575094|ref|XP_002528452.1| conserved hypothetical protein [Ricinus communis] gi|223532128|gb|EEF33935.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1902 bits (4926), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 939/1327 (70%), Positives = 1093/1327 (82%), Gaps = 13/1327 (0%)
Query: 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIK 60
M NLKL +E+ LN+ELQS E + FSA+DIE+NRLFFASS N IY+ QLSSF N A K
Sbjct: 1 MKNLKLYSELSLNVELQSNQEAILFSAIDIERNRLFFASSTNLIYATQLSSFHNGNAWRK 60
Query: 61 TAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVR 120
+++ A + IDLE GD IT+FDYLMEKEALIVGTS+G++LL++VD NA EVVG+VEGGV+
Sbjct: 61 SSLQAGVHPIDLEDGDFITSFDYLMEKEALIVGTSNGVMLLYNVDDNAMEVVGQVEGGVK 120
Query: 121 FISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEE-LAEGFDVHEPELSSSFSFKSPI 179
I+PSPDGDLLG+ TG GQILVMTHDWDLLYEN LEE +G DV + L SF I
Sbjct: 121 CIAPSPDGDLLGIVTGLGQILVMTHDWDLLYENALEEDQLDGVDVRKDLLHYSFY---SI 177
Query: 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAA 239
SWRGDGKY ATLSE N S L+KRLK+WERDSG L A+S+ KAFMGAVL+WMPSGA IAA
Sbjct: 178 SWRGDGKYLATLSEISNFSSLNKRLKIWERDSGALHAASDPKAFMGAVLDWMPSGAKIAA 237
Query: 240 VYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSV 299
V DR++E++CP IVFYERNGL RSSF+I+E +D+TVELLKWNC SDLLA+VVR ++YDSV
Sbjct: 238 VCDRRAEHRCPDIVFYERNGLFRSSFNISELVDATVELLKWNCSSDLLASVVRCDKYDSV 297
Query: 300 KICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENS 359
K+ FFSNNHWYLK+E RY R+DG+RFMW P KPL+ ICWTL+GQIT YNF+W +AVMENS
Sbjct: 298 KVWFFSNNHWYLKHETRYPRKDGVRFMWDPIKPLEFICWTLEGQITIYNFMWISAVMENS 357
Query: 360 TALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCV 419
TALVID S ILVTPLSLSLMPPP++LF+LKFP+AV ++AFY K SKN +AA LSDGCLCV
Sbjct: 358 TALVIDNSNILVTPLSLSLMPPPLHLFNLKFPSAVRDVAFYPKKSKNFVAAFLSDGCLCV 417
Query: 420 VDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGAT 479
V+LP D E+L+G E +VEACIS+T G++ HL WL SH+LL+VSH+G HSN F +
Sbjct: 418 VELPEFDTWEELDGKEIMVEACISDTVLGTLAHLTWLDSHVLLAVSHYGFSHSNCFSYTS 477
Query: 480 LNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAF 539
L E+ GFY QEIE+ACSEDHV GL+T +GWHAKVS LE LVI I PN ++ SAF
Sbjct: 478 LGEEEHHGFYLQEIEIACSEDHVPGLVTGSGWHAKVSHINYLEDLVIGITPNPVERCSAF 537
Query: 540 LQFHGGKISEYMSRVGL--TGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGG 597
+QF GKI EY S +G GGA H +F SSCPWM V+ +G L PLLFGLDD G
Sbjct: 538 VQFDAGKICEYTSTLGFGTPGGATEHYSMNFSSSCPWMTAVN---SGSLNPLLFGLDDIG 594
Query: 598 RLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFT 657
RLH GKI+CNNCSS SFYS A Q ++HLILATKQ+ LFIVDISDILH EL KYE F
Sbjct: 595 RLHFGGKILCNNCSSLSFYSNLADQVITHLILATKQDFLFIVDISDILHEELESKYEKFV 654
Query: 658 HVGNRRKEE-NISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNA 716
HV NRR+EE N+++I IWERGAK+IG+LHGD A VI+QT RGNLEC+YPRKLVL+SIVNA
Sbjct: 655 HVDNRRREEQNMNFIQIWERGAKIIGILHGDAATVIIQTIRGNLECIYPRKLVLSSIVNA 714
Query: 717 LIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNEN 776
LIQGRFRDAL+MVRRHRI+FN I+DHCGWQ+FLQSASEFV QVNNLSYITEFVCA+ NEN
Sbjct: 715 LIQGRFRDALLMVRRHRIDFNFILDHCGWQSFLQSASEFVNQVNNLSYITEFVCAVKNEN 774
Query: 777 ITETLYKKFQFLSLPCREEFKDLPAKDFKASECN-KVSSVLLAIRKALEEKVPESPSREL 835
I E LY+ ++S P ++ + + +D + + N KVSSVLLAIRKAL E VPE+P+REL
Sbjct: 775 IMEKLYR--NYISFPSKKGVEVIQGQDLRGFDANNKVSSVLLAIRKALVEIVPETPAREL 832
Query: 836 CILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVY 895
CILTTLARSDPPALEEALERIK+IRE ELLGS++PRR S+PSAEEALKHLLWL+DSEAV+
Sbjct: 833 CILTTLARSDPPALEEALERIKVIRELELLGSNDPRRTSFPSAEEALKHLLWLSDSEAVF 892
Query: 896 EAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIV 955
EAALGLYDL+LAAIVALNS+RDPKEFLPYLQELE MP L+M Y IDLRLQRFE ALKHI+
Sbjct: 893 EAALGLYDLHLAAIVALNSERDPKEFLPYLQELERMPSLIMHYNIDLRLQRFEKALKHII 952
Query: 956 SMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFC 1015
S GD+Y++DC+NL+KK QLFPLGL+LITD AK + LEAW DHLSD KCFEDAATTY C
Sbjct: 953 SAGDAYYSDCMNLLKKNPQLFPLGLQLITDHAKRMEALEAWGDHLSDKKCFEDAATTYLC 1012
Query: 1016 CSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075
CS L KA+KAYRA GNWSGVLTVAGLLKL K V +LA EL EELQALGKPGEAAKIAL+
Sbjct: 1013 CSCLGKALKAYRACGNWSGVLTVAGLLKLDKAAVLQLATELREELQALGKPGEAAKIALE 1072
Query: 1076 YCGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLEKVG 1135
YCGDV+ GISLLI+ARDWEEALRVAFMH EDLI+ VK AS+E A++LI EY+EG EKVG
Sbjct: 1073 YCGDVSGGISLLINARDWEEALRVAFMHMGEDLISDVKIASVEGANTLISEYEEGREKVG 1132
Query: 1136 KYLTRYLAVRQRRLLLVAKLQSEDRSMNDLDDDTVSETSSTFSGMSVYTTGTRKSSAASI 1195
KYLTRYLAVRQRRLLL AKLQSEDRS+NDLD DTVSE SS FSGMS YTTGTRK SAAS+
Sbjct: 1133 KYLTRYLAVRQRRLLLAAKLQSEDRSVNDLDYDTVSEASSNFSGMSAYTTGTRKGSAASV 1192
Query: 1196 KSTAASKARESKRQRNRGKIRPGSPGEEMALVDHLKGMSLTVGAKQELKSLVVFLVMLGE 1255
S+ SKAR++KRQRNR KIRPGSPGEE+ALV+H+KGMSLT GAK+EL+SL++ LVML E
Sbjct: 1193 SSSITSKARDTKRQRNRWKIRPGSPGEELALVEHIKGMSLTDGAKRELRSLLIALVMLNE 1252
Query: 1256 VDTARKLQDTGETFQLSQMAAIKLAEDTMSIDIINEHAHNMERYVQIVKLESQNSEAFSW 1315
+ ARKL GE+FQLSQ AA+KLAED+MS D INE A ++E Y+Q + + QN EAFSW
Sbjct: 1253 EELARKLHRVGESFQLSQTAAVKLAEDSMSTDSINEQALSLEHYIQKARSDPQNLEAFSW 1312
Query: 1316 RSKVFLS 1322
R KVF S
Sbjct: 1313 RPKVFSS 1319
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224100935|ref|XP_002312075.1| predicted protein [Populus trichocarpa] gi|222851895|gb|EEE89442.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1874 bits (4854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 935/1344 (69%), Positives = 1092/1344 (81%), Gaps = 25/1344 (1%)
Query: 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIK 60
M NLKL +E+ NLELQS+ E+L FSA D E+NRLFFASS N IY+A LSSFQN ++
Sbjct: 1 MKNLKLHSEISQNLELQSQQEVLLFSAFDFERNRLFFASSNNFIYTADLSSFQNGKSKSL 60
Query: 61 TAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVR 120
S+ I I+LE GD ITAFDYL+EKEALI+GT +GLLLLH+VD N+TE+VG+V GGV+
Sbjct: 61 LLASSVINQIELEDGDLITAFDYLLEKEALIIGTENGLLLLHNVDDNSTEIVGQVNGGVK 120
Query: 121 FISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEEL-AEGFDVHEP------------ 167
ISPSPDGDLL + TGF Q+LVMTHDWDLL+E + + G DV +
Sbjct: 121 CISPSPDGDLLAILTGFRQMLVMTHDWDLLHETAVGDGDGAGLDVSKDLSLLFYGLVGLW 180
Query: 168 ---ELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFM 224
E F+S +SWRGDGKYFATLSE +SS + KR+KVWERDSG L ++S+ K FM
Sbjct: 181 ISGEFDGKDMFESSVSWRGDGKYFATLSEASDSSLMFKRIKVWERDSGALHSTSDSKIFM 240
Query: 225 GAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMS 284
GAVLEWMPSGA IAAVYDRK EN+CP IVFYE+NGL RSSF I E +D+ VE LKWNC S
Sbjct: 241 GAVLEWMPSGAKIAAVYDRKVENRCPDIVFYEKNGLVRSSFSIKEAVDAKVESLKWNCSS 300
Query: 285 DLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQI 344
DLLA+VVR E+YD+VK+ FFSNNHWYLK+E+RY R+DG+RFMW P KPLQ ICWTL GQI
Sbjct: 301 DLLASVVRCEKYDAVKVWFFSNNHWYLKHEVRYSRQDGVRFMWDPVKPLQFICWTLGGQI 360
Query: 345 TTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSS 404
T+YNF W +AV+ENS AL IDGSKILVTPLSL LMPPP++LFSLKFP AV ++A YS +S
Sbjct: 361 TSYNFAWNSAVVENSIALAIDGSKILVTPLSLLLMPPPLHLFSLKFPRAVRDVALYSNNS 420
Query: 405 KNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSV 464
KN +AA LSDG L VV+LP PD E+LE EF VEA ISET FGS +HL WL SH+LL+V
Sbjct: 421 KNSVAAFLSDGSLGVVELPDPDTWEELEEKEFGVEASISETGFGSFVHLTWLDSHILLAV 480
Query: 465 SHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGL 524
SH+G S +++ EDGL GFY QEIEL CSEDHV L+T +GWHA++S + LEGL
Sbjct: 481 SHYGFTQSTCASDSSMGEDGLSGFYLQEIELVCSEDHVPSLVTGSGWHARISHRNYLEGL 540
Query: 525 VIAIAPNNAKKYSAFLQFHGGKISEYMSRVGL--TGGALTHDDASFPSSCPWMNVVSVGT 582
VI IAPN AKK SAF+QF GGKI EY S +GL TGG+ HDD SF SSCPWM+ V
Sbjct: 541 VIGIAPNPAKKCSAFVQFDGGKIVEYASILGLAGTGGSTKHDDMSFSSSCPWMSAAQVSD 600
Query: 583 NGPLKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDIS 642
+G LKPLLFGLDD GRLH GK++CNNCSSFS YS A Q ++HLIL+TKQ+ LF V+IS
Sbjct: 601 SGSLKPLLFGLDDIGRLHFGGKVLCNNCSSFSLYSNLADQVITHLILSTKQDFLFAVEIS 660
Query: 643 DILHGELALKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLEC 702
DILHGEL LKYENF H GNRRKEEN+++INIWERGAK+IGVLHGD AAV++QT RGNLEC
Sbjct: 661 DILHGELELKYENFVHTGNRRKEENMNFINIWERGAKIIGVLHGDAAAVVIQTTRGNLEC 720
Query: 703 MYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNL 762
+YPRKLVL SIVNALIQ RFRDAL++VR+HRI+FNVIVDHCGWQ F+QSASEFV+QVNNL
Sbjct: 721 IYPRKLVLASIVNALIQRRFRDALLLVRQHRIDFNVIVDHCGWQTFIQSASEFVKQVNNL 780
Query: 763 SYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKD---FKASECNKVSSVLLAI 819
SYITEF+C+I NENI ETLYK ++S P + D+ AKD F AS +KVS++LLAI
Sbjct: 781 SYITEFICSIKNENIMETLYK--NYISTPYQNGGGDVQAKDVMGFDAS--SKVSALLLAI 836
Query: 820 RKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAE 879
RKALEE+V ESP+RELCILTTLARSDPPALEEALERIK+IRE ELLGS PRRMSYPSAE
Sbjct: 837 RKALEEQVSESPARELCILTTLARSDPPALEEALERIKVIREMELLGSSGPRRMSYPSAE 896
Query: 880 EALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYT 939
EALKHLLWL+DS+AV+EAALGLYDLNLAAIVALNSQRDPKEFLPYLQELE MP L+M Y
Sbjct: 897 EALKHLLWLSDSDAVFEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELERMPSLIMSYN 956
Query: 940 IDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADH 999
IDLRL RFE AL+HIVS GD+Y++DC++LM K QLFPLGL+LITDPAK Q LEAW DH
Sbjct: 957 IDLRLHRFEKALRHIVSAGDAYYSDCMDLMNKNPQLFPLGLQLITDPAKKMQALEAWGDH 1016
Query: 1000 LSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEE 1059
LSD KCFEDAATT+ CCSSL+ A+KAYRA GNWSGVL+VAGLLK+ K+E+ +LA +LCEE
Sbjct: 1017 LSDEKCFEDAATTFLCCSSLKNALKAYRACGNWSGVLSVAGLLKMEKNEIMQLAYDLCEE 1076
Query: 1060 LQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLEC 1119
LQALGKP +AAKIAL+Y GDV +GI+LLI RDWEEALRVAFMH +E+L+ VK+A+L+C
Sbjct: 1077 LQALGKPRDAAKIALEYLGDVNSGINLLISGRDWEEALRVAFMHSQENLVLTVKNAALDC 1136
Query: 1120 ASSLIGEYKEGLEKVGKYLTRYLAVRQRRLLLVAKLQSEDRSMNDLDDDTVSETSSTFSG 1179
A +LI EYKEGLEKVGKYL RYLAVRQRRLLL AKLQSE+RSMNDLDDDTVSE SS FSG
Sbjct: 1137 ARTLISEYKEGLEKVGKYLARYLAVRQRRLLLAAKLQSEERSMNDLDDDTVSEASSNFSG 1196
Query: 1180 MSVYTTGTRKSSAASIKSTAASKARESKRQRNRGKIRPGSPGEEMALVDHLKGMSLTVGA 1239
MS YTTGTRK SA+S+ S+ SKAR+ +RQR RGKIR GS EE+ALV+HLKGMSLT GA
Sbjct: 1197 MSAYTTGTRKGSASSVTSSVTSKARDMRRQRKRGKIRSGSADEELALVEHLKGMSLTAGA 1256
Query: 1240 KQELKSLVVFLVMLGEVDTARKLQDTGETFQLSQMAAIKLAEDTMSIDIINEHAHNMERY 1299
K EL+SL+V LVMLG + ARKLQ GE FQLSQMAA+KL EDT+ DI++E AHN+E+Y
Sbjct: 1257 KHELRSLLVTLVMLGGEEIARKLQFAGENFQLSQMAAVKLTEDTIPTDILSEQAHNLEQY 1316
Query: 1300 VQIVKLESQNSEAFSWRSKVFLSP 1323
VQ ++ E N ++FSWR KVF+SP
Sbjct: 1317 VQKLRNELPNLDSFSWRYKVFISP 1340
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147843466|emb|CAN82069.1| hypothetical protein VITISV_010008 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1846 bits (4782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 923/1319 (69%), Positives = 1069/1319 (81%), Gaps = 47/1319 (3%)
Query: 6 LCAEVPLNLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISA 65
L +++ LNLEL+S +E++ FSA DIE+NRL FASS N IY+ QL S QNER KT+ +
Sbjct: 259 LYSDLSLNLELRSAEEVVSFSAFDIERNRLVFASSDNFIYTTQLPSSQNERVWGKTSSYS 318
Query: 66 EIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPS 125
++E IDLEPGD ITAFDYLMEKEALIVGTSSGLLLLH+VD NA EVVGRVEGGV+ ISPS
Sbjct: 319 KVEPIDLEPGDFITAFDYLMEKEALIVGTSSGLLLLHNVDDNAIEVVGRVEGGVKCISPS 378
Query: 126 PDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDG 185
PDGDLLG+ TGFGQI+VMTHDWD+LYEN L++L E D+ EP SS + ISWRGDG
Sbjct: 379 PDGDLLGIITGFGQIVVMTHDWDVLYENTLDDLPEDVDLSEPTFSSCY-----ISWRGDG 433
Query: 186 KYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKS 245
KYF TL E SS HK+LKVWERD+G L A+SE KAFMG VL+WMPSGA IA+VYD+K
Sbjct: 434 KYFVTLGELHTSSS-HKKLKVWERDTGALHAASESKAFMGTVLDWMPSGAKIASVYDKKV 492
Query: 246 ENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305
EN+CP IVF+ERNGLERSSF INE D+ VE+LKWNC SDLLAAVVR E +DSVKI FFS
Sbjct: 493 ENECPLIVFFERNGLERSSFSINELTDAKVEILKWNCSSDLLAAVVRSETFDSVKIWFFS 552
Query: 306 NNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVID 365
NNHWYLK EIRYLR DG++FMWHPTKPLQLICWTL G++T +F+W TAVMENSTALVID
Sbjct: 553 NNHWYLKQEIRYLREDGVKFMWHPTKPLQLICWTLGGEVTVNSFVWVTAVMENSTALVID 612
Query: 366 GSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425
SKIL TPLSLSLMPPPMYLF+LKF + + ++AFY+K+SKN LAA LSDGCLCV +LP
Sbjct: 613 ESKILATPLSLSLMPPPMYLFNLKFSSTIRDIAFYTKNSKNLLAAFLSDGCLCVAELPPL 672
Query: 426 DMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGL 485
D E+LEG E V+A SET FGS +HLIWL +H+LL VSH G HSNYF ++D L
Sbjct: 673 DTWEELEGKELSVDASSSETIFGSFVHLIWLDAHILLGVSHFGFSHSNYFSQTPSSKDML 732
Query: 486 LGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGG 545
G +Q E A GWHAK++ QIPL+GLVI +APN KK SAF+QF GG
Sbjct: 733 HGIMSQVWEPA------------PGWHAKITNQIPLDGLVIGLAPNPTKKCSAFVQFDGG 780
Query: 546 KISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLHVSGKI 605
K+ EY+ +G+ GGA +D S SSCPWM+VV VG +G +PLLFGLDD GRLHV GKI
Sbjct: 781 KVFEYIPNLGIMGGAPKTEDMSLSSSCPWMSVVPVGDSGSSRPLLFGLDDNGRLHVGGKI 840
Query: 606 VCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKE 665
+CNNC SFSFYS SA A++HLILATKQ+LLF++DI DIL G+L +KYENF H GN+R+E
Sbjct: 841 ICNNCRSFSFYSNSADLAITHLILATKQDLLFVIDIDDILDGKLEVKYENFIHAGNKRRE 900
Query: 666 E-NISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRD 724
E N ++I IWERGAKVIGVLHGDEAAVILQT RGNLEC+YPRKLVL SI+NAL+Q RFRD
Sbjct: 901 EDNRNFITIWERGAKVIGVLHGDEAAVILQTARGNLECIYPRKLVLASIINALVQSRFRD 960
Query: 725 ALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENITETLYKK 784
L+MVRRHRI+FNVIVDHCGWQAFLQSA+EFVRQVNNLSYITEFVC+I NE ITETLYK
Sbjct: 961 GLLMVRRHRIDFNVIVDHCGWQAFLQSAAEFVRQVNNLSYITEFVCSIKNETITETLYK- 1019
Query: 785 FQFLSLPCREEFKDLPAKDFKA-SECNKVSSVLLAIRKALEEKVPESPSRELCILTTLAR 843
++SL C E KD+ A+DFK + NKVSSVL++IRKALEE+VPESP+RELCILTTLAR
Sbjct: 1020 -NYISLLCPREAKDVQARDFKGPNNNNKVSSVLMSIRKALEEQVPESPARELCILTTLAR 1078
Query: 844 SDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYD 903
SDPPALEEALERIK+IRE ELLGSD+PRR SYPSAEEALKHLLWL+DSEAVYEA+LGLYD
Sbjct: 1079 SDPPALEEALERIKLIREMELLGSDDPRRKSYPSAEEALKHLLWLSDSEAVYEASLGLYD 1138
Query: 904 LNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHA 963
L+LAAIVALNSQRDPKEFLP+LQELE MP LMRY ID+RL+R+E+ALKHI S GD+Y+A
Sbjct: 1139 LHLAAIVALNSQRDPKEFLPFLQELERMPVHLMRYNIDIRLRRYESALKHIASAGDAYYA 1198
Query: 964 DCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAM 1023
DCLNLMK+ QLFPLGL+LITDPAK ++VLEAW DH SD KCFEDAATTY CCS LEKA+
Sbjct: 1199 DCLNLMKENPQLFPLGLQLITDPAKKKEVLEAWGDHFSDEKCFEDAATTYLCCSGLEKAL 1258
Query: 1024 KAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNG 1083
KAYRA GNW GV+TVAGLLKLGK+E+ +LA ELCEELQALGKPGEAAKIALDYCGDV +
Sbjct: 1259 KAYRACGNWGGVMTVAGLLKLGKEEIVQLANELCEELQALGKPGEAAKIALDYCGDVKSA 1318
Query: 1084 ISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLEKVGKYLTRYLA 1143
I+LL+ ++ + C + +EGLEKVGKYL RYLA
Sbjct: 1319 INLLVQC-------------------ARLGGGTKGCVYA-----QEGLEKVGKYLARYLA 1354
Query: 1144 VRQRRLLLVAKLQSEDRSMNDLDDDTVSETSSTFSGMSVYTTGTRKSSAASIKSTAASKA 1203
VRQRRLLL AKLQSEDRS+NDLDDDT SE SS+FSGMS YTTGTRK SAASI S+ ASK
Sbjct: 1355 VRQRRLLLAAKLQSEDRSINDLDDDTASEASSSFSGMSAYTTGTRKGSAASISSSTASKG 1414
Query: 1204 RESKRQRNRGKIRPGSPGEEMALVDHLKGMSLTVGAKQELKSLVVFLVMLGEVDTARKLQ 1263
R +RQRNRGKIR GSPGEEMALV+HLKGM LT GA++ELKSL+V LV+LG+ + A+KLQ
Sbjct: 1415 RGMRRQRNRGKIRAGSPGEEMALVEHLKGMYLTPGAERELKSLLVSLVVLGKEEMAKKLQ 1474
Query: 1264 DTGETFQLSQMAAIKLAEDTMSIDIINEHAHNMERYVQIVKLESQNSEAFSWRSKVFLS 1322
TGE FQLSQMAA+KLAEDTM D I+E+A+ +E Y+Q ++ E Q S+AF WRSKV LS
Sbjct: 1475 RTGEAFQLSQMAAVKLAEDTMPNDNIDEYAYTLENYIQKLRNE-QQSDAFVWRSKVLLS 1532
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449483884|ref|XP_004156721.1| PREDICTED: elongator complex protein 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1805 bits (4676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 873/1325 (65%), Positives = 1063/1325 (80%), Gaps = 10/1325 (0%)
Query: 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIK 60
MNNLKL +E L LELQ+ E++QFSA DIE+NRLFF SSAN IY+ QL+SF NER
Sbjct: 1 MNNLKLYSESSLKLELQTNGEVIQFSAFDIERNRLFFLSSANFIYTTQLTSFHNERMKSV 60
Query: 61 TAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVR 120
+ AE+ ID+E GD +T+FDYLMEKEALIVGT +G LLL SVDGN TE+VG VEGGV+
Sbjct: 61 AMLPAEVHPIDVETGDYVTSFDYLMEKEALIVGTRNGALLLFSVDGNGTEIVGMVEGGVK 120
Query: 121 FISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180
ISPSPDGDLL + +G QILVMTHDWDL+YEN LE+ EG EP S F+ IS
Sbjct: 121 RISPSPDGDLLCIISGLRQILVMTHDWDLMYENTLEDFPEG----EPNFSEQNDFEGSIS 176
Query: 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAV 240
WRGDGKYF TLS+ S+ K+LK+WERD G++ ASSE+K F+G VLEWMPSGA IAAV
Sbjct: 177 WRGDGKYFVTLSDVETSNTALKKLKIWERDGGSMHASSEVKTFVGGVLEWMPSGAKIAAV 236
Query: 241 YDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVK 300
YD+KSE++C ++VF+ERNGLERSSF INE+I + VELLKWNC SDLLA +VR E YDS+K
Sbjct: 237 YDKKSESECQTVVFFERNGLERSSFCINERIGAKVELLKWNCSSDLLAGIVRCESYDSLK 296
Query: 301 ICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENST 360
I FFSNNHWYLK+EIRY ++D +RF+W PT+PLQL CWT++GQIT +NF+WT+++MENST
Sbjct: 297 IWFFSNNHWYLKHEIRYSKKDVVRFVWDPTRPLQLFCWTVNGQITMHNFMWTSSIMENST 356
Query: 361 ALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVV 420
ALVID +KILVTPLSLSLMPPP+YLFSLKF +AV ++AF+SK+ KNCLAA LSDG LC+V
Sbjct: 357 ALVIDDAKILVTPLSLSLMPPPLYLFSLKFSSAVRDVAFFSKNFKNCLAAFLSDGLLCIV 416
Query: 421 DLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATL 480
+ PA D+ ++LEG EF VEA SE+ FGS H++WL H LL VSH+G NY +
Sbjct: 417 EFPAVDVWDELEGKEFNVEASTSESTFGSFQHIVWLDLHKLLVVSHYGSDDYNYVSQGSP 476
Query: 481 NEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFL 540
NE+ GF EI+L +DHV G TC+GW A++S + +EG V+ +A N A+ SAF+
Sbjct: 477 NEEPF-GFCLLEIDLKSPKDHVLGSPTCSGWGARISNRKFIEGPVVCVASNPAENCSAFI 535
Query: 541 QFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLH 600
Q +GGK+ +Y SR+G G L +D SF SSCPWM+V V NG LKPLLFGLDD GRLH
Sbjct: 536 QLNGGKVLKYASRLGFPGEFLKQEDKSFSSSCPWMSVALVDNNGLLKPLLFGLDDVGRLH 595
Query: 601 VSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVG 660
++G +VCNNCS FSFYS GQ +HLIL TKQ+LL I+DISD+LH ++ KY F
Sbjct: 596 LNGMVVCNNCSGFSFYSNLGGQITTHLILGTKQDLLCILDISDLLHEKIEEKYNFFQASS 655
Query: 661 NRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQG 720
++EEN ++I IWE+ AK++GVLHGD AAVILQT RGNLEC+YPRKLVL SI NALIQG
Sbjct: 656 KCKEEENRNFIYIWEKSAKIVGVLHGDAAAVILQTARGNLECIYPRKLVLASITNALIQG 715
Query: 721 RFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENITET 780
RFRDAL+MVRRHRI+FNVI+D+CG QAF+QSA EFV+QVNN +YITEFVCAI N+++T+T
Sbjct: 716 RFRDALLMVRRHRIDFNVIIDYCGLQAFIQSAVEFVKQVNNFNYITEFVCAIKNKDVTKT 775
Query: 781 LYKKFQFLSLPCREEFKDLPAKDFKASEC--NKVSSVLLAIRKALEEKVPESPSRELCIL 838
LYK F+S C ++ K ++ K S C KVS VLLAIR+A+EE + ESP+RELCIL
Sbjct: 776 LYK--NFISSSCTDDNKVGAPRESKDS-CVKTKVSLVLLAIRRAVEEHMMESPARELCIL 832
Query: 839 TTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAA 898
TTLARSDPPALEEALERIK+IRE ELL SD PRR SYPS+EEALKHLLWL+D +AV+E A
Sbjct: 833 TTLARSDPPALEEALERIKVIREIELLNSDVPRRTSYPSSEEALKHLLWLSDPDAVFETA 892
Query: 899 LGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMG 958
LGLYDL LAAIVA+NS+RDPKEF+PYLQELE MP LLM Y +DLRL RFE ALKHIVS G
Sbjct: 893 LGLYDLKLAAIVAINSERDPKEFIPYLQELEKMPFLLMCYNVDLRLSRFEKALKHIVSAG 952
Query: 959 DSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSS 1018
+ +DC+NLMKK QLF LGL+LITD AK + VLEAW D+LSD KCFEDAA TY CCS+
Sbjct: 953 EDNFSDCINLMKKKPQLFSLGLQLITDNAKRKLVLEAWGDYLSDEKCFEDAAETYLCCSN 1012
Query: 1019 LEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG 1078
LEKA+K+YRASGNWS V VAG LK+ +DE+ +LA ELCEELQALGKPGEAAKIAL+YCG
Sbjct: 1013 LEKALKSYRASGNWSQVFIVAGFLKMSEDEILQLAHELCEELQALGKPGEAAKIALEYCG 1072
Query: 1079 DVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLEKVGKYL 1138
D+ G++LLI+ARDWEE LR+AF ++REDL+T++K+AS ECAS LIGEY+EGLEKVGKYL
Sbjct: 1073 DINRGMALLINARDWEEGLRIAFRYQREDLVTELKNASAECASLLIGEYEEGLEKVGKYL 1132
Query: 1139 TRYLAVRQRRLLLVAKLQSEDRSMNDLDDDTVSETSSTFSGMSVYTTGTRKSSAASIKST 1198
TRYLAVRQRRLLL AK+++E+ SMN+LDDDT SE SS SGMS Y+ G+R+SSA ++ +T
Sbjct: 1133 TRYLAVRQRRLLLAAKIKAEESSMNNLDDDTASEASSNLSGMSAYSAGSRRSSAVTMSTT 1192
Query: 1199 AASKARESKRQRNRGKIRPGSPGEEMALVDHLKGMSLTVGAKQELKSLVVFLVMLGEVDT 1258
+ K+RE++RQ++RGKIRPGSPGEEMALV+HLKGM+LT G + ELKSL++ LVMLG+ +T
Sbjct: 1193 SGRKSREARRQKSRGKIRPGSPGEEMALVEHLKGMTLTAGPRSELKSLLISLVMLGKEET 1252
Query: 1259 ARKLQDTGETFQLSQMAAIKLAEDTMSIDIINEHAHNMERYVQIVKLESQNSEAFSWRSK 1318
A+KLQ T E+FQLSQMAA+ LA+DT+S DIINE A +E YVQ++K E Q EAFSWR K
Sbjct: 1253 AKKLQRTAESFQLSQMAAVNLADDTISSDIINEQADTLENYVQVLKSEVQKLEAFSWRYK 1312
Query: 1319 VFLSP 1323
VFLSP
Sbjct: 1313 VFLSP 1317
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449449974|ref|XP_004142739.1| PREDICTED: elongator complex protein 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1799 bits (4659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 871/1325 (65%), Positives = 1061/1325 (80%), Gaps = 10/1325 (0%)
Query: 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIK 60
MNNLKL +E L LELQ+ E++QFSA DIE+NRLFF SSAN IY+ QL+SF NER
Sbjct: 1 MNNLKLYSESSLKLELQTNGEVIQFSAFDIERNRLFFLSSANFIYTTQLTSFHNERMKSV 60
Query: 61 TAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVR 120
+ AE+ ID+E GD +T+FDYLMEKEALIVGT +G LLL SVDGN TE+VG VEGGV+
Sbjct: 61 AMLPAEVHPIDVETGDYVTSFDYLMEKEALIVGTRNGALLLFSVDGNGTEIVGMVEGGVK 120
Query: 121 FISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180
ISPSPDGDLL + +G QILVMTHDWDL+YEN LE+ EG EP S F+ IS
Sbjct: 121 RISPSPDGDLLCIISGLRQILVMTHDWDLMYENTLEDFPEG----EPNFSEQNDFEGSIS 176
Query: 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAV 240
WRGDGKYF TLS+ S+ K+LK+WERD G++ ASSE+K F+G VLEWMPSGA IAAV
Sbjct: 177 WRGDGKYFVTLSDVETSNTALKKLKIWERDGGSMHASSEVKTFVGGVLEWMPSGAKIAAV 236
Query: 241 YDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVK 300
YD+KSE++C ++VF+ERNGLERSSF INE+I + VELLKWNC SDLLA +VR E YDS+K
Sbjct: 237 YDKKSESECQTVVFFERNGLERSSFCINERIGAKVELLKWNCSSDLLAGIVRCESYDSLK 296
Query: 301 ICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENST 360
I FFSNNHWYLK+EIRY ++D +RF+W PT+PLQL CWT++GQIT +NF+WT+++MENST
Sbjct: 297 IWFFSNNHWYLKHEIRYSKKDVVRFVWDPTRPLQLFCWTVNGQITMHNFMWTSSIMENST 356
Query: 361 ALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVV 420
ALVID +KILVTPLSLSLMPPP+YLFSLKF +AV ++AF+SK+ KNCLAA LSDG LC+V
Sbjct: 357 ALVIDDAKILVTPLSLSLMPPPLYLFSLKFSSAVRDVAFFSKNFKNCLAAFLSDGLLCIV 416
Query: 421 DLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATL 480
+ PA D+ ++LEG EF VEA SE+ FGS H++WL H LL VSH+G NY +
Sbjct: 417 EFPAVDVWDELEGKEFNVEASTSESTFGSFQHIVWLDLHKLLVVSHYGSDDYNYVSQGSP 476
Query: 481 NEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFL 540
NE+ GF EI+L +DHV G TC+GW A++S + +EG V+ +A N A+ SAF+
Sbjct: 477 NEEPF-GFCLLEIDLKSPKDHVLGSPTCSGWGARISNRKFIEGPVVCVASNPAENCSAFI 535
Query: 541 QFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLH 600
Q +GGK+ +Y SR+G G L +D SF SSCPWM+V V NG LKPLLFGLDD GRLH
Sbjct: 536 QLNGGKVLKYASRLGFPGEFLKQEDKSFSSSCPWMSVALVDNNGLLKPLLFGLDDVGRLH 595
Query: 601 VSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVG 660
++G +VCNNCS FSFYS Q +HLIL TKQ+LL I+DISD+LH ++ KY F
Sbjct: 596 LNGMVVCNNCSGFSFYSNLGDQITTHLILGTKQDLLCILDISDLLHEKIEEKYNFFQASS 655
Query: 661 NRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQG 720
++EEN ++I IWE+ AK++GVLHGD AAVILQT RGNLEC+YPRKLVL SI NALIQG
Sbjct: 656 KCKEEENRNFIYIWEKSAKIVGVLHGDAAAVILQTARGNLECIYPRKLVLASITNALIQG 715
Query: 721 RFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENITET 780
RFRDAL+MVRRHRI+FNVI+D+CG QAF+QSA EFV+QVNN +YITEFVCAI N+++T+T
Sbjct: 716 RFRDALLMVRRHRIDFNVIIDYCGLQAFIQSAVEFVKQVNNFNYITEFVCAIKNKDVTKT 775
Query: 781 LYKKFQFLSLPCREEFKDLPAKDFKASEC--NKVSSVLLAIRKALEEKVPESPSRELCIL 838
LYK F+S C ++ K ++ K S C KVS VLLAIR+A+EE + ESP+RELCIL
Sbjct: 776 LYK--NFISSSCTDDNKVGAPRESKDS-CVKTKVSLVLLAIRRAVEEHMMESPARELCIL 832
Query: 839 TTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAA 898
TTLARSDPPALEEALERIK+I E ELL SD PRR SYPS+EEALKHLLWL+D +AV+E A
Sbjct: 833 TTLARSDPPALEEALERIKVICEIELLNSDVPRRTSYPSSEEALKHLLWLSDPDAVFETA 892
Query: 899 LGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMG 958
LGLYDL LAAIVA+NS+RDPKEF+PYLQELE MP LLM Y +DLRL RFE ALKHIVS G
Sbjct: 893 LGLYDLKLAAIVAINSERDPKEFIPYLQELEKMPFLLMCYNVDLRLSRFEKALKHIVSAG 952
Query: 959 DSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSS 1018
+ +DC+NLMKK QLF LGL+LITD AK + VLEAW D+LSD KCFEDAA TY CCS+
Sbjct: 953 EDNFSDCINLMKKKPQLFSLGLQLITDNAKRKLVLEAWGDYLSDEKCFEDAAETYLCCSN 1012
Query: 1019 LEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG 1078
LEKA+K+YRASGNWS V VAG LK+ +DE+ +LA ELCEELQALGKPGEAAKIAL+YCG
Sbjct: 1013 LEKALKSYRASGNWSQVFIVAGFLKMSEDEILQLAHELCEELQALGKPGEAAKIALEYCG 1072
Query: 1079 DVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLEKVGKYL 1138
D+ G++LLI+ARDWEE LR+AF ++REDL+T++K+AS ECAS LIGEY+EGLEKVGKYL
Sbjct: 1073 DINRGMALLINARDWEEGLRIAFRYQREDLVTELKNASAECASLLIGEYEEGLEKVGKYL 1132
Query: 1139 TRYLAVRQRRLLLVAKLQSEDRSMNDLDDDTVSETSSTFSGMSVYTTGTRKSSAASIKST 1198
TRYLAVRQRRLLL AK+++E+ SMN+LDDDT SE SS SGMS Y+ G+R+SSA ++ +T
Sbjct: 1133 TRYLAVRQRRLLLAAKIKAEESSMNNLDDDTASEASSNLSGMSAYSAGSRRSSAVTMSTT 1192
Query: 1199 AASKARESKRQRNRGKIRPGSPGEEMALVDHLKGMSLTVGAKQELKSLVVFLVMLGEVDT 1258
+ K+RE++RQ++RGKIRPGSPGEEMALV+HLKGM+LT G + ELKSL++ LVMLG+ +T
Sbjct: 1193 SGRKSREARRQKSRGKIRPGSPGEEMALVEHLKGMTLTAGPRSELKSLLISLVMLGKEET 1252
Query: 1259 ARKLQDTGETFQLSQMAAIKLAEDTMSIDIINEHAHNMERYVQIVKLESQNSEAFSWRSK 1318
A+KLQ T E+FQLSQMAA+ LA+DT+S DIINE A +E YVQ++K E Q EAFSWR K
Sbjct: 1253 AKKLQRTAESFQLSQMAAVNLADDTISSDIINEQADTLENYVQVLKSEVQKLEAFSWRYK 1312
Query: 1319 VFLSP 1323
VFLSP
Sbjct: 1313 VFLSP 1317
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297811479|ref|XP_002873623.1| aba-overly sensitive 1 [Arabidopsis lyrata subsp. lyrata] gi|297319460|gb|EFH49882.1| aba-overly sensitive 1 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1670 bits (4324), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 834/1328 (62%), Positives = 1023/1328 (77%), Gaps = 16/1328 (1%)
Query: 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIK 60
M NLKL +EV N++L S +E++QF+A DI+Q+RLFFASSAN +YS QLSSFQN R+
Sbjct: 1 MKNLKLYSEVSQNIQLHSTEEVVQFAAYDIDQSRLFFASSANFVYSLQLSSFQNGRSG-- 58
Query: 61 TAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVR 120
+A+ AE+ ID+EPGD ITAFDYL EKE+L++GTS GLLLLH+V+ + TE+VG +EGGV+
Sbjct: 59 SALPAEVCIIDMEPGDFITAFDYLAEKESLLIGTSHGLLLLHNVESDVTELVGNIEGGVK 118
Query: 121 FISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180
ISPSP GDLLG+ TG GQ+LVMT+DW L+YE L E+ +G V E + S IS
Sbjct: 119 CISPSPTGDLLGLITGLGQLLVMTYDWGLMYERALGEVPDGGYVREADDLSVTCGGISIS 178
Query: 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAV 240
WRGDGKYFAT+ E S + K++K+WE DSGTLQ+SSE K F +LEWMPSGA IAAV
Sbjct: 179 WRGDGKYFATMGEVYESGCMSKKIKIWESDSGTLQSSSETKEFTQGILEWMPSGAKIAAV 238
Query: 241 YDRKSENKCPSIVFYERNGLERSSFDINEQIDST--VELLKWNCMSDLLAAVVRFEEYDS 298
Y RKS++ PSI F+ERNGLERSSF I E D+T E LKWN SDLLA VV + YD+
Sbjct: 239 YKRKSDDSSPSIAFFERNGLERSSFRIGEPEDATESFETLKWNSASDLLAGVVSCKTYDA 298
Query: 299 VKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMEN 358
+++ FFSNNHWYLK EIRY R G+ MW PTKPLQLICWTL GQ++ N++W TAVME+
Sbjct: 299 IRVWFFSNNHWYLKQEIRYPREAGVTVMWDPTKPLQLICWTLSGQVSVRNYMWVTAVMED 358
Query: 359 STALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLC 418
STA VID SKILVTPLSLSLMPPP YLFSL F +AV ++A+YS++SKNCLA LSDG L
Sbjct: 359 STAFVIDNSKILVTPLSLSLMPPPTYLFSLSFSSAVRDIAYYSRNSKNCLAVFLSDGNLS 418
Query: 419 VVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478
V+ PAP+ EDLEG +F+VE TA GS +HL+WL +H LL VS +G H+
Sbjct: 419 FVEFPAPNTWEDLEGKDFIVEISDCNTALGSFVHLLWLDAHSLLCVSAYGSSHNKCLSSG 478
Query: 479 TLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSA 538
E L G Y QE+E+ C EDHV +TC+G+ A V+ Q LE V+A+A N +K+ SA
Sbjct: 479 AY-ETELHGSYLQEVEVVCHEDHVSDQVTCSGFKASVAFQTLLESPVLALAWNPSKRDSA 537
Query: 539 FLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGR 598
F++F GGK+ Y SR G+ ++ D FPS+CPW+ V V +G KPL+ GLDD GR
Sbjct: 538 FVEFEGGKVLGYASRSGIMESRISDDSVCFPSTCPWVRVAQVDASGVHKPLICGLDDMGR 597
Query: 599 LHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTH 658
L+++GK +CNNCSSFSFYS+ A + ++HLI+ TKQ+ LFIVD D+L G++AL F
Sbjct: 598 LYINGKNLCNNCSSFSFYSELANEVVTHLIILTKQDFLFIVDTKDVLQGDVALGNVYFVI 657
Query: 659 VGNRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALI 718
G RR EEN+SY+NIWERGAKVIGVL+GDEAAV+LQT RGNLEC+YPRKLVL+SI N L
Sbjct: 658 DGRRRDEENMSYVNIWERGAKVIGVLNGDEAAVVLQTMRGNLECIYPRKLVLSSITNVLA 717
Query: 719 QGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENIT 778
Q RF+DAL +VRRHRI+FNVIVD GWQAFLQSA EFV QVNNL+++TEFVCA+ NE++T
Sbjct: 718 QQRFKDALNLVRRHRIDFNVIVDLYGWQAFLQSAVEFVEQVNNLNHVTEFVCAMKNEDVT 777
Query: 779 ETLYKKFQFLSLPCREEFKDLPAKDFKASEC-NKVSSVLLAIRKALEEKVPESPSRELCI 837
ETLYKKF F ++ K KD C NKVSSVLLAIR+ALEE +PESPSRELCI
Sbjct: 778 ETLYKKFSF----SKKGDKVFEVKD----RCSNKVSSVLLAIREALEEHIPESPSRELCI 829
Query: 838 LTTLARSDPPALEEALERIKIIRETELLGS-DEPRRMSYPSAEEALKHLLWLADSEAVYE 896
LTTLARSDPPA+EE+L RIK +RE ELL S D+ R+ S PSAEEALKHLLWL DS+AV+E
Sbjct: 830 LTTLARSDPPAIEESLLRIKSVRELELLNSSDDIRKKSCPSAEEALKHLLWLLDSDAVFE 889
Query: 897 AALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVS 956
AALGLYDLNLAAIVALNSQRDPKEFLPYLQELE MP LM + ID++LQRF++AL++IVS
Sbjct: 890 AALGLYDLNLAAIVALNSQRDPKEFLPYLQELEKMPESLMHFKIDIKLQRFDSALRNIVS 949
Query: 957 MGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCC 1016
GD+Y DC+NL+KK QLFPLGL+LITDP K + VLEAWADHL D K FEDAATTY CC
Sbjct: 950 AGDAYFPDCMNLIKKNPQLFPLGLQLITDPEKKQAVLEAWADHLIDEKRFEDAATTYLCC 1009
Query: 1017 SSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDY 1076
LEKA KAYR G+WSGVL V L+KLGKDE+ KLA ELCEE+ ALGKP EAAKIAL+Y
Sbjct: 1010 CKLEKASKAYRECGDWSGVLRVGALMKLGKDEILKLAYELCEEVNALGKPAEAAKIALEY 1069
Query: 1077 CGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLEKVGK 1136
C D++ GISLLI+AR+WEEALRVAF+H +D I+ VK ++LECAS L+ E+KE +EKVGK
Sbjct: 1070 CRDISGGISLLINAREWEEALRVAFLHTTDDRISVVKSSALECASGLVSEFKESIEKVGK 1129
Query: 1137 YLTRYLAVRQRRLLLVAKLQSEDRSMNDLDDDTVSETSSTFSGMSVYTTGTRKS-SAASI 1195
YLTRYLAVRQRRLLL AKL+SE+RS+ DLDDDT SE SS SGMS YT GTR+ +A+
Sbjct: 1130 YLTRYLAVRQRRLLLAAKLKSEERSVVDLDDDTASEASSNLSGMSAYTLGTRRGSAASVS 1189
Query: 1196 KSTAASKARESKRQRNRGKIRPGSPGEEMALVDHLKGMSLTVGAKQELKSLVVFLVMLGE 1255
STA S+AR+ +RQR GKIR GS GEEMALVDHLKGM +T G K+ELKSL++ LV +GE
Sbjct: 1190 SSTATSRARDLRRQRKSGKIRAGSAGEEMALVDHLKGMRMTEGGKRELKSLLICLVTVGE 1249
Query: 1256 VDTARKLQDTGETFQLSQMAAIKLAEDTMSIDIINEHAHNMERYVQIVKLESQNSEAFSW 1315
+++A+KLQ T E FQ+SQ+AA++LA DT+S + ++E + ERY Q + +++S+ FSW
Sbjct: 1250 MESAQKLQQTAENFQVSQVAAVELAHDTVSSENVDEEVYCFERYAQKTRSTARDSDDFSW 1309
Query: 1316 RSKVFLSP 1323
KVF+SP
Sbjct: 1310 MLKVFISP 1317
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15240688|ref|NP_196872.1| elongator complex protein 1 [Arabidopsis thaliana] gi|75171810|sp|Q9FNA4.1|ELP1_ARATH RecName: Full=Elongator complex protein 1; Short=AtELP1; AltName: Full=Elongator component 1; AltName: Full=Protein ABA-OVERLY SENSITIVE 1; AltName: Full=Protein ELONGATA 2 gi|9758034|dbj|BAB08695.1| unnamed protein product [Arabidopsis thaliana] gi|332004544|gb|AED91927.1| elongator complex protein 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1663 bits (4306), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 833/1327 (62%), Positives = 1015/1327 (76%), Gaps = 12/1327 (0%)
Query: 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIK 60
M NLKL +EVP N++L S +E++QF+A DI+Q+RLFFASSAN +Y+ QLSSFQNE A K
Sbjct: 1 MKNLKLFSEVPQNIQLHSTEEVVQFAAYDIDQSRLFFASSANFVYALQLSSFQNESAGAK 60
Query: 61 TAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVR 120
+A+ E+ ID+EPGD ITAFDYL EKE+L++GTS GLLL+H+V+ + TE+VG +EGGV+
Sbjct: 61 SAMPVEVCSIDIEPGDFITAFDYLAEKESLLIGTSHGLLLVHNVESDVTELVGNIEGGVK 120
Query: 121 FISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180
ISP+P GDLLG+ TG GQ+LVMT+DW L+YE L E+ EG V E S IS
Sbjct: 121 CISPNPTGDLLGLITGLGQLLVMTYDWALMYEKALGEVPEGGYVRETNDLSVNCGGISIS 180
Query: 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAV 240
WRGDGKYFAT+ E S + K++K+WE DSG LQ+SSE K F +LEWMPSGA IAAV
Sbjct: 181 WRGDGKYFATMGEVYESGCMSKKIKIWESDSGALQSSSETKEFTQGILEWMPSGAKIAAV 240
Query: 241 YDRKSENKCPSIVFYERNGLERSSFDINEQIDST--VELLKWNCMSDLLAAVVRFEEYDS 298
Y RKS++ PSI F+ERNGLERSSF I E D+T E LKWN SDLLA VV + YD+
Sbjct: 241 YKRKSDDSSPSIAFFERNGLERSSFRIGEPEDATESCENLKWNSASDLLAGVVSCKTYDA 300
Query: 299 VKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMEN 358
+++ FFSNNHWYLK EIRY R G+ MW PTKPLQLICWTL GQ++ +F+W TAVME+
Sbjct: 301 IRVWFFSNNHWYLKQEIRYPREAGVTVMWDPTKPLQLICWTLSGQVSVRHFMWVTAVMED 360
Query: 359 STALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLC 418
STA VID SKILVTPLSLSLMPPPMYLFSL F +AV ++A+YS++SKNCLA LSDG L
Sbjct: 361 STAFVIDNSKILVTPLSLSLMPPPMYLFSLSFSSAVRDIAYYSRNSKNCLAVFLSDGNLS 420
Query: 419 VVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478
V+ PAP+ EDLEG +F VE +TA GS +HL+WL H LL VS +G H+
Sbjct: 421 FVEFPAPNTWEDLEGKDFSVEISDCKTALGSFVHLLWLDVHSLLCVSAYGSSHNKCLSSG 480
Query: 479 TLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSA 538
+ + L G Y QE+E+ C EDHV +TC+G+ A ++ Q LE V+A+A N +K+ SA
Sbjct: 481 GYDTE-LHGSYLQEVEVVCHEDHVPDQVTCSGFKASITFQTLLESPVLALAWNPSKRDSA 539
Query: 539 FLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGR 598
F++F GGK+ Y SR + + D FPS+CPW+ V V +G KPL+ GLDD GR
Sbjct: 540 FVEFEGGKVLGYASRSEIMETRSSDDSVCFPSTCPWVRVAQVDASGVHKPLICGLDDMGR 599
Query: 599 LHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTH 658
L ++GK +CNNCSSFSFYS+ A + ++HLI+ TKQ+ LFIVD D+L+G++AL F
Sbjct: 600 LSINGKNLCNNCSSFSFYSELANEVVTHLIILTKQDFLFIVDTKDVLNGDVALGNVFFVI 659
Query: 659 VGNRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALI 718
G RR EEN+SY+NIWERGAKVIGVL+GDEAAVILQT RGNLEC+YPRKLVL+SI NAL
Sbjct: 660 DGRRRDEENMSYVNIWERGAKVIGVLNGDEAAVILQTMRGNLECIYPRKLVLSSITNALA 719
Query: 719 QGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENIT 778
Q RF+DA +VRRHRI+FNVIVD GWQAFLQSA FV QVNNL+++TEFVCA+ NE++T
Sbjct: 720 QQRFKDAFNLVRRHRIDFNVIVDLYGWQAFLQSAVAFVEQVNNLNHVTEFVCAMKNEDVT 779
Query: 779 ETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPESPSRELCIL 838
ETLYKKF F S E F+ K S NKVSSVL AIRKALEE +PESPSRELCIL
Sbjct: 780 ETLYKKFSF-SKKGDEVFR------VKDSCSNKVSSVLQAIRKALEEHIPESPSRELCIL 832
Query: 839 TTLARSDPPALEEALERIKIIRETELLGS-DEPRRMSYPSAEEALKHLLWLADSEAVYEA 897
TTLARSDPPA+EE+L RIK +RE ELL S D+ R+ S PSAEEALKHLLWL DSEAV+EA
Sbjct: 833 TTLARSDPPAIEESLLRIKSVREMELLNSSDDIRKKSCPSAEEALKHLLWLLDSEAVFEA 892
Query: 898 ALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSM 957
ALGLYDLNLAAIVALNSQRDPKEFLPYLQELE MP LM + ID++LQRF++AL++IVS
Sbjct: 893 ALGLYDLNLAAIVALNSQRDPKEFLPYLQELEKMPESLMHFKIDIKLQRFDSALRNIVSA 952
Query: 958 GDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCS 1017
G Y DC+NL+KK QLFPLGL LITDP K VLEAWADHL D K FEDAATTY CC
Sbjct: 953 GVGYFPDCMNLIKKNPQLFPLGLLLITDPEKKLVVLEAWADHLIDEKRFEDAATTYLCCC 1012
Query: 1018 SLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYC 1077
LEKA KAYR G+WSGVL V L+KLGKDE+ KLA ELCEE+ ALGKP EAAKIAL+YC
Sbjct: 1013 KLEKASKAYRECGDWSGVLRVGALMKLGKDEILKLAYELCEEVNALGKPAEAAKIALEYC 1072
Query: 1078 GDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLEKVGKY 1137
D++ GISLLI+AR+WEEALRVAF+H +D I+ VK ++LECAS L+ E+KE +EKVGKY
Sbjct: 1073 SDISGGISLLINAREWEEALRVAFLHTADDRISVVKSSALECASGLVSEFKESIEKVGKY 1132
Query: 1138 LTRYLAVRQRRLLLVAKLQSEDRSMNDLDDDTVSETSSTFSGMSVYTTGTRKS-SAASIK 1196
LTRYLAVRQRRLLL AKL+SE+RS+ DLDDDT SE SS SGMS YT GTR+ +A+
Sbjct: 1133 LTRYLAVRQRRLLLAAKLKSEERSVVDLDDDTASEASSNLSGMSAYTLGTRRGSAASVSS 1192
Query: 1197 STAASKARESKRQRNRGKIRPGSPGEEMALVDHLKGMSLTVGAKQELKSLVVFLVMLGEV 1256
S A S+AR+ +RQR GKIR GS GEEMALVDHLKGM +T G K+ELKSL++ LV LGE+
Sbjct: 1193 SNATSRARDLRRQRKSGKIRAGSAGEEMALVDHLKGMRMTDGGKRELKSLLICLVTLGEM 1252
Query: 1257 DTARKLQDTGETFQLSQMAAIKLAEDTMSIDIINEHAHNMERYVQIVKLESQNSEAFSWR 1316
++A+KLQ T E FQ+SQ+AA++LA DT+S + ++E + ERY Q + +++S+AFSW
Sbjct: 1253 ESAQKLQQTAENFQVSQVAAVELAHDTVSSESVDEEVYCFERYAQKTRSTARDSDAFSWM 1312
Query: 1317 SKVFLSP 1323
KVF+SP
Sbjct: 1313 LKVFISP 1319
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|125600729|gb|EAZ40305.1| hypothetical protein OsJ_24750 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 1488 bits (3851), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 744/1341 (55%), Positives = 977/1341 (72%), Gaps = 30/1341 (2%)
Query: 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSS-FQNERASI 59
M NLK+ + L+LQ E + SA+D E+ R FF SS N +YS L + Q
Sbjct: 1 MKNLKVVTRIAQKLQLQLDGETVVVSAVDAERRRAFFVSSENFLYSVDLPAPTQQSLQWS 60
Query: 60 KTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGV 119
++ + ++ E + LEPGD I A DYLMEKE+L++G+S+G LLL++VD TEVVGR+EGGV
Sbjct: 61 ESTLDSDAEEVVLEPGDYIVAMDYLMEKESLLLGSSTGCLLLYNVDEKTTEVVGRLEGGV 120
Query: 120 RFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAE-GFDVHEPELSSSFSFKSP 178
+ I+ SPDG L+ VTTGFGQ+L+MT+DW++L+E L+ + D++ P + +S
Sbjct: 121 KTIASSPDGALISVTTGFGQLLIMTNDWEVLFETSLDPHCDLTGDINSP----NGHIQSS 176
Query: 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIA 238
ISWRGDGK+FATL SS+ +L +WER+SG + +SS+ KAF+GA L+WMPSGA +A
Sbjct: 177 ISWRGDGKFFATLGGLEGSSQ---KLTIWERESGNIHSSSDTKAFIGASLDWMPSGAKVA 233
Query: 239 AVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDS 298
+DRK+E KCP IVFYE+NGLERS F I+E ++ ++ LKWNC S+LLAA+V +YD
Sbjct: 234 TAHDRKTEGKCPLIVFYEKNGLERSHFSIDEPAEAVIQALKWNCNSELLAALVSCGQYDV 293
Query: 299 VKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMEN 358
+K+ SNNHWYLK E+RY +++G+RF W TKP+ LICWTL GQ+ T+ F WTTAV E
Sbjct: 294 IKVWSCSNNHWYLKQELRYTKKEGVRFYWDQTKPMHLICWTLGGQVITHRFAWTTAVSET 353
Query: 359 STALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLC 418
S ALVIDGS +LVTPLSL LMPPPM LF L FP AV E++F S +SKN +AA LS+G LC
Sbjct: 354 SIALVIDGSHVLVTPLSLGLMPPPMSLFHLTFPCAVNEVSFLSYNSKNHIAAYLSNGSLC 413
Query: 419 VVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNY---- 474
V LP D E+ EG+ V+ C SE+ + +HL W+ + L+ + S+
Sbjct: 414 VSVLPVADTWEEFEGSGISVDPCFSESTLNNYMHLTWIDTCTLIGICCRADAFSSTPMRS 473
Query: 475 FRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAK 534
++L E ++ EIEL CSED + G +GW AK+S ++PL+ VI I+ N AK
Sbjct: 474 SEASSLLEKNDSPYFINEIELVCSEDSLLGSACSSGWQAKISKKMPLQAAVIGISQNPAK 533
Query: 535 KYSAFLQFHGGKISEYMSRVGL------TGGALTHDDASFPSSCPWMNVVSVGTNGPLKP 588
+ SAF+Q GG++ EY S+V L + T D +FP+SCPWM V NG ++
Sbjct: 534 EGSAFIQLSGGRVVEYCSKVNLFRMSAPVQVSETGSDHTFPTSCPWMTAVQCHENGMVRT 593
Query: 589 LLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAG---QAMSHLILATKQNLLFIVDISDIL 645
LLFGLDD +LHV +++ +NCSSF+FYS + G Q ++HL++ TKQ+LLFIVDIS+IL
Sbjct: 594 LLFGLDDSSKLHVGKRLLSSNCSSFTFYSSAYGAKEQVVTHLLVTTKQDLLFIVDISEIL 653
Query: 646 --HGELALKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECM 703
+GE+ +H ++ +E +I +WE+GAK+IGVLHGDEAAVI+QT RGNLEC+
Sbjct: 654 LKNGEVTTDSHIRSHPRGKQSKE---HITVWEKGAKLIGVLHGDEAAVIMQTTRGNLECI 710
Query: 704 YPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLS 763
YPRKLVL SIV AL+QGRFRDA MVRRHRI+FN++VD+CGW++F++SA++FV+QVNNLS
Sbjct: 711 YPRKLVLVSIVQALVQGRFRDAFDMVRRHRIDFNMVVDYCGWKSFMKSAADFVKQVNNLS 770
Query: 764 YITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKAL 823
+ITEFVC+I NEN++ LY+ + C D S+ NKV+SVL+AIRKAL
Sbjct: 771 HITEFVCSIKNENVSSKLYETYISFPDHCATSVADTVNTHGLLSD-NKVTSVLMAIRKAL 829
Query: 824 EEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALK 883
E +V ES SRELCILTTLARS+PP LEEAL RIK+IRE ELLG D+ RR YPSAEE+LK
Sbjct: 830 EVQVEESSSRELCILTTLARSEPPLLEEALNRIKVIRELELLGVDDARRKLYPSAEESLK 889
Query: 884 HLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLR 943
HLLWL + EAV+ AALGLYDLNL+AIVALNSQ+DPKEFLP+L+ LE +PP +M+YT+DLR
Sbjct: 890 HLLWLTEPEAVFNAALGLYDLNLSAIVALNSQKDPKEFLPFLKSLECLPPAIMKYTVDLR 949
Query: 944 LQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDV 1003
L R+E+ALK+IVS GD YH DC+ L+ QLFPLGL+L TDP K Q+LEAW D LS+
Sbjct: 950 LGRYESALKNIVSAGDEYHEDCMKLLNANPQLFPLGLQLFTDPDKRHQILEAWGDQLSEE 1009
Query: 1004 KCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQAL 1063
KCF DAA TY CCSS +K++KAYR G+W GV TVAGLLK K+E+ +LA +LC+E QAL
Sbjct: 1010 KCFADAAITYQCCSSYQKSLKAYRDCGDWRGVFTVAGLLKFKKEEILQLAHDLCDEFQAL 1069
Query: 1064 GKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSL 1123
GKPG+AAKIAL+YC DV G+ I AR+WEEALRVA+MH R+DL+ V+ A+LEC++ L
Sbjct: 1070 GKPGDAAKIALEYCSDVDRGVGYFITAREWEEALRVAYMHSRQDLVDTVRDAALECSALL 1129
Query: 1124 IGEYKEGLEKVGKYLTRYLAVRQRRLLLVAKLQSEDRSMNDLDDDTVSETSSTFSGMSVY 1183
I EY+EGL KVGKYL RY+AVRQRRL L AKLQSEDR M D++DD++SE S++FS MS Y
Sbjct: 1130 ISEYQEGLLKVGKYLARYVAVRQRRLSLAAKLQSEDRFM-DVEDDSISEVSTSFSEMSAY 1188
Query: 1184 TTGTRKSSAASIKSTAASKARESKRQRNRGKIRPGSPGEEMALVDHLKGMSLTVGAKQEL 1243
TT + K S+AS+ S++ASK+R ++RQ+ GKIR GSPGEEMALV+HLKGMSLT GA EL
Sbjct: 1189 TTRSTKESSASVISSSASKSRGARRQKKGGKIRAGSPGEEMALVEHLKGMSLTSGALTEL 1248
Query: 1244 KSLVVFLVMLGEVDTARKLQDTGETFQLSQMAAIKLAEDTMSIDIINEHAHNMERYVQIV 1303
KSL+V L+ LG +TAR++Q G+ F++SQ AA+KLAEDT+S D I+E+AH +E YV+++
Sbjct: 1249 KSLLVVLIQLGREETARQVQLAGDNFEVSQRAAVKLAEDTVSNDKIDENAHTLENYVKML 1308
Query: 1304 KL-ESQNSEAFSWRSKVFLSP 1323
+ +S +SE WR K P
Sbjct: 1309 RAHQSADSETTCWRIKALSPP 1329
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1323 | ||||||
| TAIR|locus:2173199 | 1319 | ABO1 "ABA-OVERLY SENSITIVE 1" | 0.993 | 0.996 | 0.584 | 0.0 | |
| UNIPROTKB|F1SP27 | 1342 | IKBKAP "Uncharacterized protei | 0.337 | 0.332 | 0.306 | 4e-90 | |
| UNIPROTKB|O95163 | 1332 | IKBKAP "Elongator complex prot | 0.339 | 0.337 | 0.302 | 2.1e-88 | |
| MGI|MGI:1914544 | 1333 | Ikbkap "inhibitor of kappa lig | 0.339 | 0.336 | 0.307 | 4.1e-84 | |
| UNIPROTKB|E1BBQ3 | 1191 | LOC505465 "Uncharacterized pro | 0.273 | 0.303 | 0.312 | 2.5e-81 | |
| UNIPROTKB|Q8WND5 | 1333 | IKBKAP "Elongator complex prot | 0.337 | 0.334 | 0.291 | 3.7e-81 | |
| RGD|620072 | 1331 | Ikbkap "inhibitor of kappa lig | 0.336 | 0.334 | 0.306 | 7.2e-80 | |
| DICTYBASE|DDB_G0284075 | 1390 | elp1 "elongation protein 1" [D | 0.417 | 0.397 | 0.284 | 2.4e-77 | |
| UNIPROTKB|F5H2T0 | 983 | IKBKAP "Elongator complex prot | 0.339 | 0.456 | 0.302 | 2.1e-65 | |
| SGD|S000004376 | 1349 | IKI3 "Subunit of Elongator com | 0.399 | 0.392 | 0.277 | 4.5e-64 |
| TAIR|locus:2173199 ABO1 "ABA-OVERLY SENSITIVE 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3866 (1366.0 bits), Expect = 0., P = 0.
Identities = 776/1327 (58%), Positives = 948/1327 (71%)
Query: 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIK 60
M NLKL +EVP N++L S +E++QF+A DI+Q+RLFFASSAN +Y+ QLSSFQNE A K
Sbjct: 1 MKNLKLFSEVPQNIQLHSTEEVVQFAAYDIDQSRLFFASSANFVYALQLSSFQNESAGAK 60
Query: 61 TAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATXXXXXXXXXXX 120
+A+ E+ ID+EPGD ITAFDYL EKE+L++GTS GLLL+H+V+ + T
Sbjct: 61 SAMPVEVCSIDIEPGDFITAFDYLAEKESLLIGTSHGLLLVHNVESDVTELVGNIEGGVK 120
Query: 121 FISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELXXXXXXXXXXX 180
ISP+P GDLLG+ TG GQ+LVMT+DW L+YE L E+ EG V E
Sbjct: 121 CISPNPTGDLLGLITGLGQLLVMTYDWALMYEKALGEVPEGGYVRETNDLSVNCGGISIS 180
Query: 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAV 240
WRGDGKYFAT+ E S + K++K+WE DSG LQ+SSE K F +LEWMPSGA IAAV
Sbjct: 181 WRGDGKYFATMGEVYESGCMSKKIKIWESDSGALQSSSETKEFTQGILEWMPSGAKIAAV 240
Query: 241 YDRKSENKCPSIVFYERNGLERSSFDINEQIDST--VELLKWNCMSDLLAAVVRFEEYDS 298
Y RKS++ PSI F+ERNGLERSSF I E D+T E LKWN SDLLA VV + YD+
Sbjct: 241 YKRKSDDSSPSIAFFERNGLERSSFRIGEPEDATESCENLKWNSASDLLAGVVSCKTYDA 300
Query: 299 VKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMEN 358
+++ FFSNNHWYLK EIRY R G+ MW PTKPLQLICWTL GQ++ +F+W TAVME+
Sbjct: 301 IRVWFFSNNHWYLKQEIRYPREAGVTVMWDPTKPLQLICWTLSGQVSVRHFMWVTAVMED 360
Query: 359 STALVIDGSKILVTXXXXXXXXXXXXXXXXKFPTAVTEMAFYSKSSKNCLAAILSDGCLC 418
STA VID SKILVT F +AV ++A+YS++SKNCLA LSDG L
Sbjct: 361 STAFVIDNSKILVTPLSLSLMPPPMYLFSLSFSSAVRDIAYYSRNSKNCLAVFLSDGNLS 420
Query: 419 VVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGXXXXXXXXXXGPRHSNYFRGA 478
V+ PAP+ EDLEG +F VE +TA GS +HL+WL G H+
Sbjct: 421 FVEFPAPNTWEDLEGKDFSVEISDCKTALGSFVHLLWLDVHSLLCVSAYGSSHNKCLSSG 480
Query: 479 TLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSA 538
+ + L G Y QE+E+ C EDHV +TC+G+ A ++ Q LE V+A+A N +K+ SA
Sbjct: 481 GYDTE-LHGSYLQEVEVVCHEDHVPDQVTCSGFKASITFQTLLESPVLALAWNPSKRDSA 539
Query: 539 FLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGR 598
F++F GGK+ Y SR + + D FPS+CPW+ V V +G KPL+ GLDD GR
Sbjct: 540 FVEFEGGKVLGYASRSEIMETRSSDDSVCFPSTCPWVRVAQVDASGVHKPLICGLDDMGR 599
Query: 599 LHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTH 658
L ++GK +CNNCSSFSFYS+ A + ++HLI+ TKQ+ LFIVD D+L+G++AL F
Sbjct: 600 LSINGKNLCNNCSSFSFYSELANEVVTHLIILTKQDFLFIVDTKDVLNGDVALGNVFFVI 659
Query: 659 VGNRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALI 718
G RR EEN+SY+NIWERGAKVIGVL+GDEAAVILQT RGNLEC+YPRKLVL+SI NAL
Sbjct: 660 DGRRRDEENMSYVNIWERGAKVIGVLNGDEAAVILQTMRGNLECIYPRKLVLSSITNALA 719
Query: 719 QGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENIT 778
Q RF+DA +VRRHRI+FNVIVD GWQAFLQSA FV QVNNL+++TEFVCA+ NE++T
Sbjct: 720 QQRFKDAFNLVRRHRIDFNVIVDLYGWQAFLQSAVAFVEQVNNLNHVTEFVCAMKNEDVT 779
Query: 779 ETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPESPSRELCIL 838
ETLYKKF F S E F+ KD S NKVSSVL AIRKALEE +PESPSRELCIL
Sbjct: 780 ETLYKKFSF-SKKGDEVFR---VKD---SCSNKVSSVLQAIRKALEEHIPESPSRELCIL 832
Query: 839 TTLARSDPPALEEALERIKIIRETELLGS-DEPRRMSYPSAEEALKHLLWLADSEAVYEA 897
TTLARSDPPA+EE+L RIK +RE ELL S D+ R+ S PSAEEALKHLLWL DSEAV+EA
Sbjct: 833 TTLARSDPPAIEESLLRIKSVREMELLNSSDDIRKKSCPSAEEALKHLLWLLDSEAVFEA 892
Query: 898 ALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSM 957
ALGLYDLNLAAIVALNSQRDPKEFLPYLQELE MP LM + ID++LQRF++AL++IVS
Sbjct: 893 ALGLYDLNLAAIVALNSQRDPKEFLPYLQELEKMPESLMHFKIDIKLQRFDSALRNIVSA 952
Query: 958 GDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCS 1017
G Y DC+NL+KK QLFPLGL LITDP K VLEAWADHL D K FEDAATTY CC
Sbjct: 953 GVGYFPDCMNLIKKNPQLFPLGLLLITDPEKKLVVLEAWADHLIDEKRFEDAATTYLCCC 1012
Query: 1018 SLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKXXXXXXXXXXXXGKPGEAAKIALDYC 1077
LEKA KAYR G+WSGVL V L+KLGKDE+ K GKP EAAKIAL+YC
Sbjct: 1013 KLEKASKAYRECGDWSGVLRVGALMKLGKDEILKLAYELCEEVNALGKPAEAAKIALEYC 1072
Query: 1078 GDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLEKVGKY 1137
D++ GISLLI+AR+WEEALRVAF+H +D I+ VK ++LECAS L+ E+KE +EKVGKY
Sbjct: 1073 SDISGGISLLINAREWEEALRVAFLHTADDRISVVKSSALECASGLVSEFKESIEKVGKY 1132
Query: 1138 LTRYXXXXXXXXXXXXXXXSEDRSMNDLDDDTVSETSSTFSGMSVYTTGTRXXXXXXXXX 1197
LTRY SE+RS+ DLDDDT SE SS SGMS YT GTR
Sbjct: 1133 LTRYLAVRQRRLLLAAKLKSEERSVVDLDDDTASEASSNLSGMSAYTLGTRRGSAASVSS 1192
Query: 1198 XXXXX-XRESKRQRNRGKIRPGSPGEEMALVDHLKGMSLTVGAKQELKSLVVFLVMLGEV 1256
R+ +RQR GKIR GS GEEMALVDHLKGM +T G K+ELKSL++ LV LGE+
Sbjct: 1193 SNATSRARDLRRQRKSGKIRAGSAGEEMALVDHLKGMRMTDGGKRELKSLLICLVTLGEM 1252
Query: 1257 DTARKLQDTGETFQLSQMAAIKLAEDTMSIDIINEHAHNMERYVQIVKLESQNSEAFSWR 1316
++A+KLQ T E FQ+SQ+AA++LA DT+S + ++E + ERY Q + +++S+AFSW
Sbjct: 1253 ESAQKLQQTAENFQVSQVAAVELAHDTVSSESVDEEVYCFERYAQKTRSTARDSDAFSWM 1312
Query: 1317 SKVFLSP 1323
KVF+SP
Sbjct: 1313 LKVFISP 1319
|
|
| UNIPROTKB|F1SP27 IKBKAP "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 511 (184.9 bits), Expect = 4.0e-90, Sum P(4) = 4.0e-90
Identities = 144/470 (30%), Positives = 225/470 (47%)
Query: 811 KVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDEP 870
KV + A+R A+E P L ILT+ + P LE L+++ ++ L D
Sbjct: 825 KVDLICDAMRAAMENINPHKYC--LSILTSHVKKTTPELETVLQKVHELQGNAALVPDAV 882
Query: 871 RRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELES 930
SAEEALK+LL L D +Y+ +LG Y+ +L +VA SQ+DPKE+LP+L L+
Sbjct: 883 ------SAEEALKYLLLLVDVNELYDHSLGTYNFDLVLMVAEKSQKDPKEYLPFLNTLKK 936
Query: 931 MPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLIT-DPAKM 989
M R+TID L+R+E A+ H+ G Y +CLNL+K L+ L+L D +
Sbjct: 937 METNYQRFTIDKYLKRYEKAIGHLSKCGPEYFPECLNLIKD-KNLYNKALELYPPDSQQY 995
Query: 990 EQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEV 1049
+ + A+ +HL E A + C + EKA+ A+ A GNW L VA L+L KD++
Sbjct: 996 KDISIAYGEHLLQEHLHEPAGLVFARCGAHEKALSAFLACGNWRQALCVAAQLELNKDQL 1055
Query: 1050 AKXXXXXXXXXXXXGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLI 1109
A K +AA + Y D + LL++ WEEALR+ + R D+I
Sbjct: 1056 ASLGRTLAGKLVEQRKYSDAAAVLEQYAQDYEEAVLLLLEGAAWEEALRLVHKYNRPDII 1115
Query: 1110 -TKVKHASLECASSLIGEYKEGLEKVGKYLTRYXXXXXXXXXXXXXXXS---EDRSMNDL 1165
T VK + LE + Y L+ +R+ +D + +
Sbjct: 1116 ETNVKPSILEAQKN----YMAFLDSQSSIFSRHKNRLLVVRELKEQAQQVNLDDEAPHGQ 1171
Query: 1166 DDDTVSETSSTFSGMSVYTTGTRXXXXXXXXXXXXXXXRESKRQRNRGKIRPGSPGEEMA 1225
+ D SETSS SG + +G R+++R+++ ++ GSP E++A
Sbjct: 1172 ESDLFSETSSVMSGSDM--SGRYSHSNSRISARSSKNRRKAERKKH--SLKEGSPLEDLA 1227
Query: 1226 LVDHLKGM-SLTVGAKQELKSLVVFLVMLGEVDTARKLQDTGE-TFQLSQ 1273
L++ L + T K E+ ++ L + G + R+LQ T E T QL +
Sbjct: 1228 LLEALSEVVQSTEQLKDEISHILKMLFLFGFDEQGRELQKTFEDTLQLME 1277
|
|
| UNIPROTKB|O95163 IKBKAP "Elongator complex protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 487 (176.5 bits), Expect = 2.1e-88, Sum P(4) = 2.1e-88
Identities = 142/469 (30%), Positives = 222/469 (47%)
Query: 810 NKVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDE 869
NK+ V A+R +E P L ILT+ + P LE L+++ EL G+
Sbjct: 814 NKIDLVCDAMRAVMESINPHKYC--LSILTSHVKKTTPELEIVLQKVH-----ELQGN-A 865
Query: 870 PRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELE 929
P SAEEALK+LL L D +Y+ +LG YD +L +VA SQ+DPKE+LP+L L+
Sbjct: 866 PSDPDAVSAEEALKYLLHLVDVNELYDHSLGTYDFDLVLMVAEKSQKDPKEYLPFLNTLK 925
Query: 930 SMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKM 989
M R+TID L+R+E A+ H+ G Y +CLNL+K L+ LKL + ++
Sbjct: 926 KMETNYQRFTIDKYLKRYEKAIGHLSKCGPEYFPECLNLIKD-KNLYNEALKLYSPSSQQ 984
Query: 990 EQVLE-AWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDE 1048
Q + A+ +HL +E A + C + EKA+ A+ GNW L VA L KD+
Sbjct: 985 YQDISIAYGEHLMQEHMYEPAGLMFARCGAHEKALSAFLTCGNWKQALCVAAQLNFTKDQ 1044
Query: 1049 VAKXXXXXXXXXXXXGKPGEAAKIALDYCG-DVTNGISLLIDARDWEEALRVAFMHRRED 1107
+ K +AA + L+ C D + LL++ WEEALR+ + + R D
Sbjct: 1045 LVGLGRTLAGKLVEQRKHIDAAMV-LEECAQDYEEAVLLLLEGAAWEEALRLVYKYNRLD 1103
Query: 1108 LI-TKVKHASLECASSLIGEYKEGLEKVGKYLTRYXXXXXXXXXXXXXXXSEDRSMNDLD 1166
+I T VK + LE + + ++ R +D + +
Sbjct: 1104 IIETNVKPSILEAQKNYMAFLDSQTATFSRHKKRLLVVRELKEQAQQAGL-DDEVPHGQE 1162
Query: 1167 DDTVSETSSTFSGMSVYTTGTRXXXXXXXXXXXXXXXRESKRQRNRGKIRPGSPGEEMAL 1226
D SETSS SG + +G R+++R+++ ++ GSP E++AL
Sbjct: 1163 SDLFSETSSVVSGSEM--SGKYSHSNSRISARSSKNRRKAERKKH--SLKEGSPLEDLAL 1218
Query: 1227 VDHLKGM-SLTVGAKQELKSLVVFLVMLGEVDTARKLQDTGE-TFQLSQ 1273
++ L + T K E+ ++ L + + R+LQ E T QL +
Sbjct: 1219 LEALSEVVQNTENLKDEVYHILKVLFLFEFDEQGRELQKAFEDTLQLME 1267
|
|
| MGI|MGI:1914544 Ikbkap "inhibitor of kappa light polypeptide enhancer in B cells, kinase complex-associated protein" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 501 (181.4 bits), Expect = 4.1e-84, Sum P(4) = 4.1e-84
Identities = 145/471 (30%), Positives = 228/471 (48%)
Query: 811 KVSSVLLAIRKALEEKVPESPSRELC--ILTTLARSDPPALEEALERIKIIRETELLGSD 868
K+ + A+R A+E P R+ C ILT+ + P LE L++++ EL G+
Sbjct: 816 KLDLICDAMRAAMEAINP----RKFCLSILTSHVKKTTPELEIVLQKVQ-----ELQGN- 865
Query: 869 EPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQEL 928
P S EEALK+LL L D ++ +LG YD NL +VA SQ+DPKE+LP+L L
Sbjct: 866 LPFDPESVSVEEALKYLLLLVDVNELFNHSLGTYDFNLVLMVAEKSQKDPKEYLPFLNTL 925
Query: 929 ESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLIT-DPA 987
+ M R+TID L+R+E AL H+ G Y +CLNL+K L+ LKL D
Sbjct: 926 KKMETNYQRFTIDKYLKRYEKALGHLSKCGPEYFTECLNLIKD-KNLYKEALKLYRPDSP 984
Query: 988 KMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKD 1047
+ + V A+ +HL +E A + C + EKA++A+ A G+W L VA L++ KD
Sbjct: 985 QYQAVSMAYGEHLMQEHLYEPAGLVFARCGAQEKALEAFLACGSWQQALCVAAQLQMSKD 1044
Query: 1048 EVAKXXXXXXXXXXXXGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRRED 1107
+VA K EAA + Y D + LL++ WEEALR+ + + R D
Sbjct: 1045 KVAGLARTLAGKLVEQRKHSEAATVLEQYAQDYEEAVLLLLEGSAWEEALRLVYKYDRVD 1104
Query: 1108 LI-TKVKHASLECASSLIGEYKEGLEKVGKYLTRYXXXXXXXXXXXXXXXSEDRSMNDLD 1166
+I T VK + LE + + ++ R + + +
Sbjct: 1105 IIETSVKPSILEAQKNYMDFLDSETATFIRHKNRLQVVRALRRQAPQVHVDHEVAHGP-E 1163
Query: 1167 DDTVSETSSTFSGMSVYTTGTRXXXXXXXXXXXXXXXRESKRQRNRGKIRPGSPGEEMAL 1226
D SETSS SG + +G R+++R+++ ++ GSP E +AL
Sbjct: 1164 SDLFSETSSIMSGSEM--SGRYSHSNSRISARSSKNRRKAERKKH--SLKEGSPLEGLAL 1219
Query: 1227 VDHLKGMSLTVGA-KQELKSLVVFLVMLGEVDTARKLQDTGE-TFQLSQMA 1275
++ L + +V K E+++++ L + + A++LQ E T QL + A
Sbjct: 1220 LEALSEVVQSVEKLKDEVRAILKVLFLFEFEEQAKELQRAFESTLQLMERA 1270
|
|
| UNIPROTKB|E1BBQ3 LOC505465 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 426 (155.0 bits), Expect = 2.5e-81, Sum P(4) = 2.5e-81
Identities = 117/374 (31%), Positives = 180/374 (48%)
Query: 811 KVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDEP 870
KV + A+R A+E P L ILT+ + P LE AL+++ +L GS P
Sbjct: 815 KVDLICDAMRAAMENINPHKYC--LSILTSHVKKTTPELEIALQKVH-----KLQGSAPP 867
Query: 871 RRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELES 930
+ SAEEALK+LL L D +Y+ +LG YD +L +VA SQ+DPKE+LP+L L+
Sbjct: 868 VPDTV-SAEEALKYLLLLVDVNELYDHSLGTYDFDLVLMVAEKSQKDPKEYLPFLNTLKK 926
Query: 931 MPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKM- 989
M R+TID L+R+E A+ H+ G Y +CLNL+K L+ LKL ++
Sbjct: 927 MEMNYQRFTIDKHLKRYEKAIGHLSKCGPEYFPECLNLIKD-KNLYNEALKLYPPNSQQY 985
Query: 990 EQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEV 1049
+ + A+ +HL E A + C + EKA+ A+ A G+W L A L L +++
Sbjct: 986 KDISIAYGEHLLQEHLHEPAGLVFARCGAHEKALSAFLACGSWQQALCAAAQLHLTAEQL 1045
Query: 1050 AKXXXXXXXXXXXXGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLI 1109
A K +AA + Y D + +L++ WEEALR+ + R D+I
Sbjct: 1046 AGLGRTLAGKLVEQRKHSDAATVLEQYAQDHEEAVLVLLEGAAWEEALRLVHKYNRPDII 1105
Query: 1110 -TKVKHASLECASSLIGEYKEGLEKVGKYLTRYXXXXXXXXXXXXXXXSEDRSMNDLDDD 1168
T +K + LE + + ++ R +D + + + D
Sbjct: 1106 ETNIKPSILEGEKNYMAFLDSQTATFSRHKKRLLVVRELKEQAQPVSL-DDEAPHGPESD 1164
Query: 1169 TVSETSSTFSGMSV 1182
SETSS SG ++
Sbjct: 1165 LFSETSSVMSGSNL 1178
|
|
| UNIPROTKB|Q8WND5 IKBKAP "Elongator complex protein 1" [Oryctolagus cuniculus (taxid:9986)] | Back alignment and assigned GO terms |
|---|
Score = 469 (170.2 bits), Expect = 3.7e-81, Sum P(4) = 3.7e-81
Identities = 136/466 (29%), Positives = 221/466 (47%)
Query: 811 KVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDEP 870
K+ + A+R A+E P L ILT+ + P LE L+++ EL G+ P
Sbjct: 816 KLDLICDALRVAMENINPHKYC--LPILTSHVKKTTPELEIVLQKVH-----ELQGN-AP 867
Query: 871 RRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELES 930
SAEEALK+LL L D +Y+ +LG YD +L +VA SQ+DPKE+LP+L L+
Sbjct: 868 SDPDAVSAEEALKYLLLLVDVNELYDHSLGTYDFDLVLMVAEKSQKDPKEYLPFLNTLKK 927
Query: 931 MPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKME 990
M R+TID L+R+E A+ H+ G Y ++CLNL+K L+ LKL P E
Sbjct: 928 METNYQRFTIDKYLKRYEKAIGHLSKCGPEYFSECLNLIKD-KNLYNEALKLYP-PTSQE 985
Query: 991 --QVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDE 1048
+ A+ +HL + +E A + C + EKA+ A+ G+W L +A L + +++
Sbjct: 986 YKDISIAYGEHLMEEHQYEPAGLVFARCGAHEKALSAFLTCGSWQQTLCMAAQLNMTEEQ 1045
Query: 1049 VAKXXXXXXXXXXXXGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDL 1108
+A K +AA + Y D + LL++ WEEALR+ + + R D+
Sbjct: 1046 LAGLGRTLAGKLAEQRKHSDAAIVLEQYTQDYEEAVLLLLEGAAWEEALRLVYKYNRLDI 1105
Query: 1109 I-TKVKHASLECASSLIGEYKEGLEKVGKYLTRYXXXXXXXXXXXXXXXSEDRSMNDLDD 1167
I T +K + LE + + + ++ R +D + +
Sbjct: 1106 IETNIKPSILEAYKNYMAFLESQSATFSRHKERLLEVRELKERAQQVDL-DDEMPHGQEA 1164
Query: 1168 DTVSETSSTFSGMSVYTTGTRXXXXXXXXXXXXXXXRESKRQRNRGKIRPGSPGEEMALV 1227
D SETSS SG + ++ R K +R + ++ GSP E++AL+
Sbjct: 1165 DLFSETSSIVSGSEM---SSKYSHSNSRISARSSKNRR-KAERKKHSLKEGSPLEDLALL 1220
Query: 1228 DHLKGMSLTVGA-KQELKSLVVFLVMLGEVDTARKLQDT-GETFQL 1271
+ L + ++ K E+ ++ L + + R+LQ T +T QL
Sbjct: 1221 EALNEVVQSLDKLKDEVYRILKVLFLFEFDEQGRELQKTFQDTLQL 1266
|
|
| RGD|620072 Ikbkap "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 478 (173.3 bits), Expect = 7.2e-80, Sum P(4) = 7.2e-80
Identities = 143/467 (30%), Positives = 225/467 (48%)
Query: 811 KVSSVLLAIRKALEEKVPESPSRELC--ILTTLARSDPPALEEALERIKIIRETELLGSD 868
KV + A+R A+E P R+ C ILT+ + P L+ L+++ EL G
Sbjct: 814 KVDLICDAMRVAMETINP----RKFCLSILTSHVKKTTPELDIVLQKVH-----ELQGKI 864
Query: 869 EPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQEL 928
P SAEEALK+LL L D ++ +LG YD +L +VA SQ+DPKE+LP+L L
Sbjct: 865 -PFVPESVSAEEALKYLLLLVDVNELFNHSLGTYDFDLVLMVAEKSQKDPKEYLPFLNTL 923
Query: 929 ESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLIT-DPA 987
+ M R+TID L+R+E AL H+ G Y +CLNL+K L+ LKL D
Sbjct: 924 KKMETNYQRFTIDKYLKRYEKALGHLSKCGPEYFTECLNLIKD-KNLYKEALKLYRPDSP 982
Query: 988 KMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKD 1047
+ + V A+ +HL +E A + C + EKA++A+ A G+W L +A L++ KD
Sbjct: 983 QYQAVSVAYGEHLVQELLYEPAGLVFARCGAHEKALEAFLACGSWQQALCMAAQLQMAKD 1042
Query: 1048 EVAKXXXXXXXXXXXXGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRRED 1107
+VA K EAA + Y D + LL++ WEEALR+ + + R D
Sbjct: 1043 KVAGLARTLAGKLVEQRKHSEAATVLEQYALDYEEAVLLLLEGSAWEEALRLVYKYDRVD 1102
Query: 1108 LI-TKVKHASLECASSLIGEYKEGLEKVGKYLTRYXXXXXXXXXXXXXXXSEDRSMNDLD 1166
+I T VK + LE + + ++ R + + + +
Sbjct: 1103 IIETSVKPSILEAQKNYMDFLDSQTATFIRHKNRLKVVRELKSQRPRVHVDHEVA-HGRE 1161
Query: 1167 DDTVSETSSTFSGMSVYTTGTRXXXXXXXXXXXXXXXRESKRQRNRGKIRPGSPGEEMAL 1226
D SETSS SG + +G R+++R+++ ++ GSP E +AL
Sbjct: 1162 TDLFSETSSIRSGSEM--SGRYSHSNSRISARSSKNRRKAERKKH--SLKEGSPLEGLAL 1217
Query: 1227 VDHLKGMSLTVGA-KQELKSLVVFLVMLGEVDTARKLQDTGE-TFQL 1271
++ L + ++ K E+ +++ L + + AR+LQ E T QL
Sbjct: 1218 LEALSEVVQSIEKLKDEVHAILKVLFLFEFEEQARELQRAFESTLQL 1264
|
|
| DICTYBASE|DDB_G0284075 elp1 "elongation protein 1" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 588 (212.0 bits), Expect = 2.4e-77, Sum P(3) = 2.4e-77
Identities = 169/595 (28%), Positives = 300/595 (50%)
Query: 568 FPSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSA-GQAMSH 626
FP+ CPW + ++ + GL+D +L+++ ++C +C+SF+ ++K +SH
Sbjct: 587 FPTPCPWFSSCTINQEDSV----VGLNDRNKLYINQSLLCTDCNSFALHNKFLLFTTVSH 642
Query: 627 LILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISY---INIWERGAKVIGV 683
++ + +LL + + ++ N+ ++ ++ +Y I ERG++++ V
Sbjct: 643 VLRSV--SLLAPPPTQPLTYVPVSNVIGNYVGHKSQALQQQSNYDDSIRDVERGSRIVAV 700
Query: 684 LHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHC 743
+ D ++LQ RGNLE + PR L L +I + ++ A + +RR+RI+ N I DH
Sbjct: 701 VPHD-TRLVLQMPRGNLEAISPRSLTLATIREMINNHQYLSAFLTMRRNRIDMNFIYDHN 759
Query: 744 GWQAFLQSASEFVRQVNNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKD 803
F++ EFV Q+ + Y+ F+ ++ +E+ T+TL F+ L + P
Sbjct: 760 PTD-FIRHIEEFVDQIQQIDYLNLFISSLRDEDTTKTL-----FIDLETKHLLP--PTNV 811
Query: 804 FKASEC--NKVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRE 861
K S KV+ V ++RK EK +S L ILTT + PP L++ L I+ +R
Sbjct: 812 VKPSSIVVGKVNLVCDSLRKVFMEK--DSIKFNLPILTTYVKKSPPELDQVLRLIQSLRG 869
Query: 862 TELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEF 921
E+ +++ + AEE+L ++++L D +Y+ ALG YD L +VA SQ+DPKE+
Sbjct: 870 EEI--NEQGETIVNRLAEESLDYIVFLVDVNKLYDIALGTYDFELVIMVAQKSQKDPKEY 927
Query: 922 LPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLM---KKYAQ-LFP 977
+P+LQEL+ M RY+ID L R+E AL ++ G Y DCL+L+ K Y + L
Sbjct: 928 IPFLQELQKMEKFYQRYSIDKYLSRWELALYNLSRAGKKYQQDCLDLIISNKIYKEALVN 987
Query: 978 LGLK-------LITDPAKM-EQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRAS 1029
G LI + +M ++VL + D+L + FEDAA + + +K++ A+R +
Sbjct: 988 YGGSAADSDDNLIEEKDEMFKKVLNIYGDYLLESNQFEDAAYLFLQANQEKKSINAFRDA 1047
Query: 1030 GNWSGVLTVAGLLKLGKDEVAKXXXXXXXXXXXXGKPGEAAKIALDYCGDVTNGISLLID 1089
G W ++ A L K+++ + K +AA+ L+ + I + +
Sbjct: 1048 GLWENAISQANKLSYTKEQLNQLVIELSEILKRNSKFQQAAQ-CLEKFQLIDQAIHMYCE 1106
Query: 1090 ARDWEEALRVAFM----HRREDLITKVKHASLECASSLIGEYKEGLEKVGKYLTR 1140
+ EAL ++ ++ E+ K+K + L+ S+ I E EK K TR
Sbjct: 1107 GYYFNEALLLSSSSSSSNQEEEQQIKIKKSLLDSLSNQINEINNNFEKYEKMSTR 1161
|
|
| UNIPROTKB|F5H2T0 IKBKAP "Elongator complex protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 487 (176.5 bits), Expect = 2.1e-65, Sum P(3) = 2.1e-65
Identities = 142/469 (30%), Positives = 222/469 (47%)
Query: 810 NKVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDE 869
NK+ V A+R +E P L ILT+ + P LE L+++ EL G+
Sbjct: 465 NKIDLVCDAMRAVMESINPHKYC--LSILTSHVKKTTPELEIVLQKVH-----ELQGN-A 516
Query: 870 PRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELE 929
P SAEEALK+LL L D +Y+ +LG YD +L +VA SQ+DPKE+LP+L L+
Sbjct: 517 PSDPDAVSAEEALKYLLHLVDVNELYDHSLGTYDFDLVLMVAEKSQKDPKEYLPFLNTLK 576
Query: 930 SMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKM 989
M R+TID L+R+E A+ H+ G Y +CLNL+K L+ LKL + ++
Sbjct: 577 KMETNYQRFTIDKYLKRYEKAIGHLSKCGPEYFPECLNLIKD-KNLYNEALKLYSPSSQQ 635
Query: 990 EQVLE-AWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDE 1048
Q + A+ +HL +E A + C + EKA+ A+ GNW L VA L KD+
Sbjct: 636 YQDISIAYGEHLMQEHMYEPAGLMFARCGAHEKALSAFLTCGNWKQALCVAAQLNFTKDQ 695
Query: 1049 VAKXXXXXXXXXXXXGKPGEAAKIALDYCG-DVTNGISLLIDARDWEEALRVAFMHRRED 1107
+ K +AA + L+ C D + LL++ WEEALR+ + + R D
Sbjct: 696 LVGLGRTLAGKLVEQRKHIDAAMV-LEECAQDYEEAVLLLLEGAAWEEALRLVYKYNRLD 754
Query: 1108 LI-TKVKHASLECASSLIGEYKEGLEKVGKYLTRYXXXXXXXXXXXXXXXSEDRSMNDLD 1166
+I T VK + LE + + ++ R +D + +
Sbjct: 755 IIETNVKPSILEAQKNYMAFLDSQTATFSRHKKRLLVVRELKEQAQQAGL-DDEVPHGQE 813
Query: 1167 DDTVSETSSTFSGMSVYTTGTRXXXXXXXXXXXXXXXRESKRQRNRGKIRPGSPGEEMAL 1226
D SETSS SG + +G R+++R+++ ++ GSP E++AL
Sbjct: 814 SDLFSETSSVVSGSEM--SGKYSHSNSRISARSSKNRRKAERKKH--SLKEGSPLEDLAL 869
Query: 1227 VDHLKGM-SLTVGAKQELKSLVVFLVMLGEVDTARKLQDTGE-TFQLSQ 1273
++ L + T K E+ ++ L + + R+LQ E T QL +
Sbjct: 870 LEALSEVVQNTENLKDEVYHILKVLFLFEFDEQGRELQKAFEDTLQLME 918
|
|
| SGD|S000004376 IKI3 "Subunit of Elongator complex" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 517 (187.1 bits), Expect = 4.5e-64, Sum P(2) = 4.5e-64
Identities = 158/569 (27%), Positives = 271/569 (47%)
Query: 675 ERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRI 734
ERG+ ++ V+ +++V+LQ RGNLE +YPR +VL + ++ R+++A ++ R HRI
Sbjct: 712 ERGSILVSVIPS-KSSVVLQATRGNLETIYPRIMVLAEVRKNIMAKRYKEAFIVCRTHRI 770
Query: 735 NFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENIT-----ETLY----KKF 785
N +++ D+ + F+++ F+ Q+ + Y+ F+ ++ +++T ETLY K F
Sbjct: 771 NLDILHDYAP-ELFIENLEVFINQIGRVDYLNLFISCLSEDDVTKTKYKETLYSGISKSF 829
Query: 786 QFLSLPCREEFKDLPAKDF--KASECNKVSSVLLAIRKALEEKVPESPSREL-CILTTLA 842
P E + K F K S+ NK+ +L + L PE + L I+T A
Sbjct: 830 GMEPAPLTEMQIYMKKKMFDPKTSKVNKICDAVLNV--LLSN--PEYKKKYLQTIITAYA 885
Query: 843 RSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLY 902
+P L AL K+I E E S+E + + +L +L D VY++AL LY
Sbjct: 886 SQNPQNLSAAL---KLISELE--NSEEK--------DSCVTYLCFLQDVNVVYKSALSLY 932
Query: 903 DLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHI--VSMGDS 960
D++LA +VA SQ DP+E+LP+LQEL+ PL ++ ID L +E AL+H+ + +
Sbjct: 933 DVSLALLVAQKSQMDPREYLPFLQELQDNEPLRRKFLIDDYLGNYEKALEHLSEIDKDGN 992
Query: 961 YHADCLNLMKKYAQLFPLGLKLIT-DPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL 1019
+ ++ ++ + L+ GL L D K + +A HLS + + DAA Y L
Sbjct: 993 VSEEVIDYVESH-DLYKHGLALYRYDSEKQNVIYNIYAKHLSSNQMYTDAAVAYEMLGKL 1051
Query: 1020 EKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKXXXXXXXXXXXXGKPGEAAKIALDYCGD 1079
++AM AY+++ W +++A ++ +EV + +AA I L+Y +
Sbjct: 1052 KEAMGAYQSAKRWREAMSIA--VQKFPEEVESVAEELISSLTFEHRYVDAADIQLEYLDN 1109
Query: 1080 VTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLE-KVGKYL 1138
V ++L A ++ A VA ++++L+ +V L +I E + ++ L
Sbjct: 1110 VKEAVALYCKAYRYDIASLVAIKAKKDELLEEVVDPGLGEGFGIIAELLADCKGQINSQL 1169
Query: 1139 TRYXXXXXXXXXXXXXXXSEDRSMNDLDDDTVSETSSTFSGMSVYTTGTRXXXXXXXXXX 1198
R ++ D SETS+ S + YT T
Sbjct: 1170 RRLRELRAKKEENPYAFYGQETEQADDVSVAPSETSTQESFFTRYTGKTGGTAKTGASRR 1229
Query: 1199 XXXXXRESKRQRNRGKIRPGSPGEEMALV 1227
R +R+R RGK G+ EE LV
Sbjct: 1230 TAKNKRREERKRARGK--KGTIYEEEYLV 1256
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FNA4 | ELP1_ARATH | No assigned EC number | 0.6277 | 0.9939 | 0.9969 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | GSVIVG00018528001 | SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (1316 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00010464001 | SubName- Full=Chromosome chr17 scaffold_263, whole genome shotgun sequence; (563 aa) | • | • | 0.547 | ||||||
 | GSVIVG00031573001 | SubName- Full=Chromosome chr12 scaffold_57, whole genome shotgun sequence; (462 aa) | • | • | 0.436 | ||||||
 | GSVIVG00011637001 | SubName- Full=Chromosome undetermined scaffold_324, whole genome shotgun sequence; (363 aa) | • | 0.400 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1323 | |||
| pfam04762 | 903 | pfam04762, IKI3, IKI3 family | 0.0 | |
| COG5290 | 1243 | COG5290, COG5290, IkappaB kinase complex, IKAP com | 2e-81 |
| >gnl|CDD|218251 pfam04762, IKI3, IKI3 family | Back alignment and domain information |
|---|
Score = 752 bits (1943), Expect = 0.0
Identities = 310/1001 (30%), Positives = 465/1001 (46%), Gaps = 141/1001 (14%)
Query: 1 MNNLKLCAEVPLNLELQS-KDEILQFSALDIEQNRLFFASSANNI-YSAQLSSFQNERAS 58
M NLKL + + ++ D + SA D + + F +L F+ +
Sbjct: 1 MRNLKLLSHGEFKPQSETGPDLPITASAFDTASDAIIFVLGPTESNVVIELQRFRKDGEV 60
Query: 59 IKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGN--ATEVVGRVE 116
A P D + + +L + L + + G +LL + D E+VG ++
Sbjct: 61 SVLASFDAPS----PPDDKVVSLHHLADSNQLCLALAGGDILLVTYDPGTTVVEIVGSID 116
Query: 117 GGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEE------------------- 157
G+ + SPD +LL +TTG +L+MT D++ + E PL+
Sbjct: 117 VGISAAAWSPDEELLALTTGENTVLLMTRDFEPIAEVPLDPDDLKDSKHVSVGWGKKETQ 176
Query: 158 -------LAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD 210
A D PE + ISWRGDG+YFA S + + ++V+ R+
Sbjct: 177 FHGSGAKAAALRDPTVPEDDGKVT----ISWRGDGEYFAV-SSIEPETGSRRVIRVYSRE 231
Query: 211 SGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQ 270
G L + SE + L W PSG IA++ +VF+ERNGL F +
Sbjct: 232 -GALDSVSEPVDGLEGALSWRPSGNLIASIQRLP---DRLDVVFFERNGLRHGEFTLRLP 287
Query: 271 IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHP 329
+ V L+WN S++LA V E D V++ N HWYLK E+R+ G F W P
Sbjct: 288 EEEKVISLEWNSDSEVLA--VSLE--DRVQLWTTGNYHWYLKQELRFPESAGVAFFKWDP 343
Query: 330 TKPLQLICWTLDGQITTYNFIWTTAVME------NSTALVIDGSKILVTPLSLSLMPPPM 383
KPL L T GQI +F WT A N T VIDGS +L+TPL L+ +PPPM
Sbjct: 344 EKPLTLHVLTESGQILIVDFAWTVARSPTLSPNDNGTVAVIDGSTLLLTPLRLANVPPPM 403
Query: 384 YLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLE------DLEGTEFV 437
L+ P+ + ++AF +S C+A + SDG + + +L + +
Sbjct: 404 SARELELPSNINDVAFSKSNS--CVAVLTSDGDISIYELSLKKRKPGSPPKLTSKFSLDK 461
Query: 438 VEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELAC 497
VE SE A GS+ L +L LL + + EI L
Sbjct: 462 VENSDSEVALGSLRQLAFLNDSELLVL-SDSDNIT-------------------EIVLVD 501
Query: 498 SEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLT 557
+D L VS +EG+V+ ++ N+ K +++ GK+ +S
Sbjct: 502 VDDTENPL--------SVSVITEIEGIVLILSSNDYKH--VYIETRDGKVLS-LS----A 546
Query: 558 GGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYS 617
G L + FP C W VV +G + L FGL D G+L+ +G+++ +N +SF
Sbjct: 547 EGEL--SEIGFPQLCRWFRVVQIGNDERL---AFGLTDNGKLYANGRLLASNVTSFLVTD 601
Query: 618 KSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERG 677
SHL+ T Q+LL V ++ + +E ERG
Sbjct: 602 -------SHLLFTTAQHLLKFVHLTSEDLLVPL---------DDPEIDERC---RSIERG 642
Query: 678 AKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFN 737
++++ V+ A+V+LQ RGNLE +YPR LVL I L R+++A + R HRI+ N
Sbjct: 643 SRLVTVVPSK-ASVVLQMPRGNLETIYPRALVLAGIRKLLDAKRYKEAFLTCRTHRIDLN 701
Query: 738 VIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFK 797
++ D+ + FL + FV QVN + Y+ F+ ++ E++T+T+YK S P + K
Sbjct: 702 ILHDY-DPELFLDNVELFVDQVNKVDYLDLFLSSLREEDVTKTMYKDTLKASDPPGQSKK 760
Query: 798 DLPAKDFKASECNKVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIK 857
KD +KV+ + AI ALE K L ILT +PP LE+AL+ I
Sbjct: 761 SGDPKD------SKVNRICDAILAALE-KPKYKDKYLLNILTAYVCKNPPDLEDALQLIA 813
Query: 858 IIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRD 917
+RE AEEALKHL +L D +Y+ ALGLYDL LA +VA SQ+D
Sbjct: 814 ELRE-----------EDSEQAEEALKHLCFLVDVNKLYDVALGLYDLKLALLVAQKSQKD 862
Query: 918 PKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMG 958
PKE+LP+LQEL+ MP L ++TID L+R+E ALKH+ ++G
Sbjct: 863 PKEYLPFLQELQKMPELRRKFTIDDYLKRYEKALKHLSALG 903
|
Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation. This region contains WD40 like repeats. Length = 903 |
| >gnl|CDD|227610 COG5290, COG5290, IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Score = 292 bits (748), Expect = 2e-81
Identities = 283/1204 (23%), Positives = 467/1204 (38%), Gaps = 166/1204 (13%)
Query: 110 EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEE------------ 157
E+VG+V G+ S S D V T +IL+ +D + E L++
Sbjct: 106 EIVGKVSNGIVAASWSADEKTWCVVTSTREILLFDKYFDPISEYHLKKSDLVEFGKHIRV 165
Query: 158 --------------LAEGFDVHEPE------LSSSFSFKSPISWRGDGKYFATLSEFCNS 197
A+ D P L + + K I WRGD +Y S
Sbjct: 166 GWGKKETQFRGKGARAQLRDPTMPYMVDYGDLFAVDTNKKIIFWRGDTEYNLVGR----S 221
Query: 198 SKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER 257
+ +R G L ++SE M L W P G+ A + S++F+ER
Sbjct: 222 EERPRRAFRVYSREGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTS-ESVIFFER 280
Query: 258 NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRY 317
NGL FD+ D L WN +S +LA E + +K+ N HWYLK E +
Sbjct: 281 NGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA----EGNLLKLWTTKNYHWYLKVERQI 336
Query: 318 LRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIW------TTAVMENSTALVIDGSKILV 371
++ WHP + L+ + +I F + +N T+ VIDGS +L
Sbjct: 337 PGISYVK--WHPEEKNTLL-FRDGERILRVFFSEKKTHHGSEYPFDNGTSYVIDGSYMLY 393
Query: 372 TPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDL 431
TPLSL +PPPM+ + F T V F S + K AA+L D + + D E +
Sbjct: 394 TPLSLKNLPPPMFSVRVGFDTNV-VDVFPSFAEKK-GAALLRD----RLIMFRWDSEEFI 447
Query: 432 -EGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYA 490
+ TEF+ S F + L H+ L + + Y
Sbjct: 448 NKRTEFLESEFDSIVLFDGFLVL--KSGHVFL----------------LKDTNNESDTYI 489
Query: 491 QEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEY 550
+ + ++ +Y G + Y
Sbjct: 490 ----TRNGDVDERKKRGTVETRRTS--------TLVHQLCQTLLRY----GTCVGVVKHY 533
Query: 551 MSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNNC 610
L ++ FP+ +V V + + G+ D G+L V
Sbjct: 534 NFEEKL------YELLKFPNGVIDFSVDPVHST----LVAIGITDIGQLFALQ--VLLKK 581
Query: 611 SSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGN-RRKEENIS 669
S FS ++ T +N+L +H E K G R +E
Sbjct: 582 SVFSHNGTK-----LFVLFTTTENIL------SFVHLESTFKPLITVEEGTVRFFDERKR 630
Query: 670 YINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMV 729
+ ERG+ + +L + V+LQ RGNLE +YPR +VL + + +++DA +
Sbjct: 631 SV---ERGSHKVELL-PSKDFVVLQVTRGNLETIYPRIMVLAFVRKLIAAKKYKDAFDVC 686
Query: 730 RRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENITETLYKKFQFLS 789
R HR+ +++D+ + F+++ FV + + Y++ F A+ +++T+T Y F+S
Sbjct: 687 RTHRVPLGILLDY-DPELFIENLEVFVTECRRVDYLSLFSEALQRDDVTKTDY---SFIS 742
Query: 790 LPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPAL 849
K A+ F+ KV+ R+ LE + S + I L + P
Sbjct: 743 -------KSEQARRFRKVFDLKVNLECKDTREHLESLIYNDESIQTIITAYLIGN-PGNG 794
Query: 850 EEALERIK-IIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAA 908
+ AL RI + R +E S +E +K+L +L D E AL LYD +LA
Sbjct: 795 KAALMRISPLSRCSE-------------SLDEDVKNLCFLRDVNFFNEFALSLYDKSLAL 841
Query: 909 IVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNL 968
++A SQ+DP+E+LP+L E + + L +++ID L +E+AL H+ + + +
Sbjct: 842 LIAQLSQKDPREYLPFLVERQDLEALRRKFSIDNYLSIYESALGHLNED-LNVIREVMKY 900
Query: 969 MKKYAQLFPLGLKLIT-DPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYR 1027
+ ++ L+ L L D + + +A +L D AA Y +A AY
Sbjct: 901 ICRH-DLYDFLLLLYRYDGELQKFKINIFAGNLVDNLYHISAAKAYEVEGKYIEAHGAYD 959
Query: 1028 ASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALG-KPGEAAKIALDYCGDVTNGISL 1086
++ W +++ K E A+ L +L K G+A KI L Y ++ +++
Sbjct: 960 SALMWRECGSISTQEK--GYEFNLCAELLPSDLLVEFRKAGDAEKILLTYLENLYEAVAM 1017
Query: 1087 LIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLEKVGKYLTRYLAVRQ 1146
++ EA A + R + + A L E+ E + +
Sbjct: 1018 DCKGSEYREAFCEAMVSRLVESEKHYE------AGQLGEEFGGKPELAADEYVQIKSQGD 1071
Query: 1147 RRLLLVAK-----LQSEDRSMNDLDDDTVSETSSTFSG-MSVYTTGTRKSSAASIKSTAA 1200
R +L K E L D VSE +S +S T T+ + +
Sbjct: 1072 RLRVLRDKKCEMPEAREILREELLTLDDVSEAFVKYSTRLSALTEYTKDECMSKTSRSTT 1131
Query: 1201 SKARESKRQRNRGKIRPGSPGEEMALVDHLKGMSLTV-GAKQELKSLVVFLVMLGEVDTA 1259
R +R+R RGK G+ EE LV ++ + L + G + E + LV L + A
Sbjct: 1132 KNMRRGERKRARGK--KGTRYEEEYLVSSIRRLILRLVGWRPETERLVEILKRFNMEEQA 1189
Query: 1260 RKLQ 1263
R Q
Sbjct: 1190 RAHQ 1193
|
Length = 1243 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1323 | |||
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 100.0 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 100.0 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 100.0 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.98 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.96 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.95 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.95 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.95 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.95 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.95 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.94 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.94 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.94 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.94 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.94 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.94 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.93 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.93 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.93 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.92 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.92 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.92 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.92 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.91 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.91 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.91 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.9 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.9 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.9 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.9 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.89 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.89 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.87 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.87 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.87 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.87 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 99.87 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.86 | |
| PTZ00421 | 493 | coronin; Provisional | 99.86 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.86 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.85 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.85 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.84 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.83 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.83 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.83 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.83 | |
| PTZ00420 | 568 | coronin; Provisional | 99.83 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.83 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.82 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.82 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.82 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.81 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.81 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.81 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.81 | |
| PTZ00421 | 493 | coronin; Provisional | 99.8 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.8 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.8 | |
| PTZ00420 | 568 | coronin; Provisional | 99.79 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.79 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.79 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.79 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.79 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.78 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.77 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.77 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.77 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.76 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.76 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.76 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.75 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.75 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.75 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.73 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.73 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.73 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.72 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.72 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.72 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.71 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.7 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.7 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.7 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.69 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.69 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.68 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.68 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.68 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.67 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.67 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.67 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.66 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.66 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.66 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.66 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.65 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.65 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.65 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.65 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.64 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.64 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.64 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.64 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.64 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.63 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.63 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.62 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.62 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.62 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.62 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.61 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.61 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.6 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.6 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.6 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.59 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.59 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.59 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.59 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.58 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.58 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.58 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.58 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.58 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.57 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.56 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.55 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.55 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.55 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.53 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.53 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.53 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.52 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.52 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.52 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.51 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.51 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.51 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.51 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.5 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.5 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.5 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.5 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.5 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.49 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.49 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.49 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.49 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.49 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.47 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.47 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.47 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.47 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.45 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.44 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.44 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.44 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.43 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.43 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.43 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.43 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.42 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.42 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.42 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.41 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.41 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.4 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.4 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.38 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.38 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.38 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.38 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.38 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.37 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.35 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.35 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.34 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.32 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.32 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.3 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.29 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.29 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.29 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.26 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.26 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.26 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.25 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.24 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.24 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.23 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.23 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.23 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.22 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.21 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.21 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.2 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.2 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.2 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.2 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.19 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.19 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.19 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.16 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.15 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.14 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.14 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.13 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.11 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.1 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.09 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.09 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.09 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.09 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.07 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.03 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.01 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 98.99 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 98.98 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 98.97 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.96 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 98.91 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 98.9 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 98.9 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 98.88 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 98.88 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.87 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 98.86 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 98.85 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 98.83 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.81 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 98.81 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.8 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 98.79 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.78 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 98.75 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.71 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.69 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.68 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.67 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 98.64 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.61 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 98.6 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.59 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.59 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 98.56 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.56 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.56 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.54 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 98.51 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.5 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 98.5 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.48 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.48 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.47 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.45 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.44 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 98.42 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.42 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.4 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 98.39 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.37 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.35 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 98.3 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.3 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.22 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.21 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.21 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.2 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 98.12 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 98.12 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.07 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.07 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.02 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.02 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.01 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.01 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.0 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 97.92 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.84 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 97.81 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 97.77 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 97.74 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 97.74 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 97.71 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 97.65 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 97.62 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 97.54 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 97.53 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.53 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 97.49 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 97.47 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 97.44 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.43 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 97.43 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.37 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 97.35 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.31 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.3 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 97.28 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.27 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 97.27 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.27 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.24 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 97.24 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.22 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 97.21 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 97.2 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 97.2 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.19 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.17 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 97.12 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 97.06 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 97.05 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.03 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 96.99 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 96.98 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 96.94 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 96.93 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 96.91 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.86 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.81 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 96.77 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 96.77 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.75 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 96.72 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 96.72 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.71 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 96.7 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.68 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 96.68 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 96.65 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 96.63 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.53 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.52 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 96.46 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.43 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 96.41 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.41 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 96.41 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.39 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 96.34 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 96.34 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 96.32 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 96.27 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.24 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.24 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.24 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 96.21 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 96.21 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 96.21 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 96.15 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 96.15 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 96.13 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 96.08 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.06 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 96.05 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 95.98 | |
| PF12931 | 284 | Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_ | 95.91 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 95.89 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 95.85 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 95.83 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.82 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.79 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 95.73 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 95.71 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 95.68 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 95.64 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 95.53 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 95.53 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 95.44 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 95.38 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 95.34 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 95.32 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 95.28 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 95.23 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 95.13 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 95.13 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 94.93 | |
| PRK10115 | 686 | protease 2; Provisional | 94.93 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 94.91 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 94.85 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 94.79 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 94.77 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 94.73 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 94.73 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.62 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 94.61 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 94.59 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 94.55 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 94.49 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 94.48 | |
| KOG2034 | 911 | consensus Vacuolar sorting protein PEP3/VPS18 [Int | 94.44 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 94.35 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 94.19 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 94.17 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 94.1 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 94.01 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 93.76 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 93.72 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 93.7 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 93.69 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 93.65 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 93.65 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 93.43 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 93.42 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 93.35 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 93.26 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 93.2 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 93.2 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 93.18 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 93.02 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 92.99 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 92.98 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 92.88 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 92.87 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 92.86 | |
| PRK10115 | 686 | protease 2; Provisional | 92.81 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 92.7 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 92.6 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 92.58 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 92.57 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 92.55 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 92.37 | |
| KOG2168 | 835 | consensus Cullins [Cell cycle control, cell divisi | 92.33 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 92.21 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 92.1 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 92.03 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 91.93 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 91.93 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 91.85 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 91.84 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 91.76 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 91.68 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 91.65 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 91.62 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 91.46 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 91.44 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 91.4 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 91.38 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 91.34 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 91.33 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 91.28 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 91.18 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 91.17 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 91.17 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 91.15 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 91.09 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 91.05 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 91.02 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 90.85 | |
| PF12931 | 284 | Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_ | 90.84 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 90.28 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 90.08 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 90.06 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 89.75 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 89.75 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 89.7 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 89.48 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 89.43 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 89.4 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 89.22 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 89.19 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 89.14 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 89.02 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 88.81 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.63 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 88.43 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 88.17 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 88.09 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 88.02 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 88.0 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 87.66 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 87.22 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 87.19 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 87.19 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 87.13 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 86.86 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 86.63 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 85.75 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 85.63 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 85.54 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 85.45 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 85.34 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 85.23 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 85.18 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 84.96 |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-217 Score=1949.17 Aligned_cols=1211 Identities=34% Similarity=0.474 Sum_probs=1004.7
Q ss_pred CcCceecccccccccccccccceeEEeeecCCCEEEEEeCC-C-----cEEEEecccccccccceeeccccccccccCCC
Q 000736 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFASSA-N-----NIYSAQLSSFQNERASIKTAISAEIEHIDLEP 74 (1323)
Q Consensus 1 MrNL~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~s~~-~-----~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 74 (1323)
||||++..+..++. ...++ .+.+|+...+.++++|+. + .+++... .+++ +-.+.++...+
T Consensus 1 MkNL~l~~~~~f~~-~~~~~---~~~~f~l~~~~~~~ass~~~~~~~~~~~ei~~---~~kv-------~~~~~s~~~~~ 66 (1265)
T KOG1920|consen 1 MKNLKLRYMKTFEI-VAGPG---NAQAFILSPELVTVASSTINELLGLKIFEIES---VGKV-------RLVAESFLPED 66 (1265)
T ss_pred CCceeeeeeeeecc-cCCCC---chhheeeccccceeeeceeeecccccceeeec---cccc-------cceeecccCcC
Confidence 99999999999873 33333 445555555666666651 1 1233322 1111 10122232333
Q ss_pred C-CCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeee
Q 000736 75 G-DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1323)
Q Consensus 75 ~-~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~ 153 (1323)
| +.|++++|+.|+..+|+++++|+|.+.|+.+..++++|.+++||.+++||||+++||.+|+.+|+.+||++|+++.+.
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 4 499999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccC--CCceec------cCcccc---------------------CCCCeEEEEEecCCcEEEEeeccccccCCCCEE
Q 000736 154 PLEELA--EGFDVH------EPELSS---------------------SFSFKSPISWRGDGKYFATLSEFCNSSKLHKRL 204 (1323)
Q Consensus 154 ~l~~~~--~~~~Vs------~tqf~~---------------------~~~~i~~isWspDG~~lAtvss~d~~~~~d~~I 204 (1323)
+++.+. .+++|+ +|||+| .++..++|+||+||+||| +++..++ .+.|+|
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fA-Vs~~~~~-~~~Rki 224 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFA-VSFVESE-TGTRKI 224 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEE-EEEEecc-CCceeE
Confidence 996666 677876 899992 456778899999999999 8877665 445999
Q ss_pred EEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCc-EEEEEEccC
Q 000736 205 KVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDST-VELLKWNCM 283 (1323)
Q Consensus 205 rVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~-V~~laWSpD 283 (1323)
||||+ +|.|.+++++..++.++++|.|+|.+||+.+.+++ ..+|+||||||++|++|.++.+.+.. |..|+||.+
T Consensus 225 rV~dr-Eg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s---d~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 225 RVYDR-EGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS---DSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred EEecc-cchhhcccCcccccccceeecCCCCeEeeeeecCC---CCcEEEEecCCccccccccCCcccccchheeeecCC
Confidence 99999 69999999999999999999999999999999875 56899999999999999998665444 999999999
Q ss_pred CCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeee--CCCeeE
Q 000736 284 SDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAV--MENSTA 361 (1323)
Q Consensus 284 g~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~--~d~~~v 361 (1323)
|++||+...+..++.|++|+++||||||||++.|++... +.|||..+++|+++..+|++..++|.|.++. ++.+.+
T Consensus 301 sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~~~~t~~s~~d~S~~ 378 (1265)
T KOG1920|consen 301 SDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDFAWTTDRSPNDGSTV 378 (1265)
T ss_pred CCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEEEEeeeccCCCCceE
Confidence 999999887776668999999999999999999976544 9999999999999999999999999999995 788999
Q ss_pred EEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCCCCccccccCCceeEee-
Q 000736 362 LVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEA- 440 (1323)
Q Consensus 362 ~viDg~~l~lt~l~~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~- 440 (1323)
.||||+.+++|||+..+||||||.+.+.++.+ +...|..+...++...+|+.....-.+.+.....+.++.|...+
T Consensus 379 ~VIDgs~llvT~ls~~vvPPPM~~y~l~~~~~---~~~~~~~s~~~~~l~~sd~~~~~~~~~~~n~~~~~~~~~f~~f~~ 455 (1265)
T KOG1920|consen 379 YVIDGSRLLVTPLSLAVVPPPMCSYSLLFDSN---IVVMPAESKSALHLFASDIKSRWDGLDFPNSREFLKLKEFSEFIG 455 (1265)
T ss_pred EEEeCCEEEEecchhhcCCCCceeeeecCCcc---ceeecccccCchhhhhcccchhhhhccccCchhhcccccccccch
Confidence 99999999999999999999999998877664 11223332234555555654443333444444444444443111
Q ss_pred eccccccCcEEEEEEecCCeEEEEEecCCCCeeEEEEeecccCccccchhhhhhhhcccccccccccccccceeeeeecc
Q 000736 441 CISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIP 520 (1323)
Q Consensus 441 ~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (1323)
+....+.+..+.+.|+.+....+.... ++...+..+.. +++. .+..+.....+.
T Consensus 456 ~~~t~~~~~~~~~~~~~~~~~~v~~~~--~~~~k~~~~~~----------~~~~--------------~~~~l~~~~v~d 509 (1265)
T KOG1920|consen 456 SLVTPSGHKFYLLEFSVNEDTDVNANG--SNRSKIGEVGV----------QETT--------------EHHQLCQVEVYD 509 (1265)
T ss_pred hhhcCCcceEEEEEEecccceeeecCC--cchhheeeece----------EEcc--------------cccEEEEEEEEe
Confidence 111223345666666555433332222 12222222211 1100 111111111111
Q ss_pred cCCcEEEEeeCCCCCceEEEEeeCCeEEEEeccc-----cccCCCCCCCCCCCCCCCCceeEEEecCCCCCcceEEEEcC
Q 000736 521 LEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRV-----GLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDD 595 (1323)
Q Consensus 521 ~~~~v~~v~~~~~~~~~~~~q~~dG~v~~~~~~~-----~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~~gL~~ 595 (1323)
....+.. .++. ....+++..||+|+.++.+. ... ...+....+.|.+|+|..+..++ + +.+.+||++
T Consensus 510 ~~~~v~~-~~~~--~h~~~~~~~dg~Iv~~~~~~i~k~i~~~-~s~ei~~~~sp~~~~d~~~~~v~--~--~~v~~glts 581 (1265)
T KOG1920|consen 510 HCVGVVS-SYNF--EHGLFLLAGDGVIVSLCDNGIHKGIGIA-PSLEIVELKSPSPCHDGNVAFVD--E--DTVEFGLTS 581 (1265)
T ss_pred ccccchh-eeec--cccchhhcCCceEEEcccCCcccccccc-ccccEEEecCCccccccceeeec--c--ccccccccc
Confidence 1111111 1111 12277888889998875331 111 12233456789999999999887 4 457899999
Q ss_pred CCceeeCCEeeecCceeEEEeccCccccceEEEEEeeCCeEEEEEcCccccccccccccccccccCcccccccccccccc
Q 000736 596 GGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWE 675 (1323)
Q Consensus 596 ~~~L~~~~~~~~~~~tSf~~~~~~~~~~~~~Ll~tT~~~~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~R~vE 675 (1323)
.|+||+|+..|++||+||.++++ |+++||++|.|.|++|.+..+++++...+. ...+ +||++|.||
T Consensus 582 ~~~~~~n~~~l~~~~~sf~~~se-------~~~~~t~~~~l~~~~l~~~~fd~l~~~~~~----~~~~---~~E~vr~vE 647 (1265)
T KOG1920|consen 582 FGRLFINQILLSSNVSSFFFYSE-------FVLFTTTSHLLQFVCLVDFDFDTLQRVEDD----ESGR---HDERVRNVE 647 (1265)
T ss_pred eeEEEEeeEEeecCceEEEEehh-------hhhHHHHHhhhhhheeeeeeecchhhcccc----cccc---cchhhhhhh
Confidence 99999999999999999999999 999999999999999998877777664333 1112 689999999
Q ss_pred CCCEEEEEeCCCCcEEEEEeCCCceeeccchhhhHHHHHHHHhcccHHHHHHHHHhccccccEEEecCCHHHHHHhHHHH
Q 000736 676 RGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEF 755 (1323)
Q Consensus 676 rGs~iV~~~p~~~~~vVLQmpRGNLEti~PR~lvL~~i~~~l~~~~y~~Af~~~R~hRIdlNll~D~~~p~~Fl~~i~~F 755 (1323)
|||+||+++|++ ++||||||||||||||||.|||+.||.+|++++|++||.+|||||||||+|+||+ |+.|++||+.|
T Consensus 648 rGsklVa~~~~k-a~VvLQ~~RGNLEtI~pR~lVLa~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~-~~~Fl~nv~af 725 (1265)
T KOG1920|consen 648 RGSKLVAVVPQK-AAVVLQMPRGNLETIYPRILVLAKVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYD-PKRFLKNVPAF 725 (1265)
T ss_pred hcceEEEeccch-hhHhHhhcCCCceeechhhhHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhcC-HHHHHhhHHHH
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HhhcCCcchhhHHHhhccCCccccccccccccccCCccccccCCCcccccccCCCcHHHHHHHHHHHHhhcCCCCCcchh
Q 000736 756 VRQVNNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPESPSREL 835 (1323)
Q Consensus 756 v~qv~~~~~l~lFls~L~~edvt~t~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~KV~~iC~a~~~~l~~~~~~~~~~~~ 835 (1323)
|+|+++++||+|||++|++||||+|||+.+ ..+.. +...+.....+|||+||+++|++|++ ..+++|.|
T Consensus 726 l~~in~~~~l~lfl~~lk~eDvtk~~y~~~--~~s~k-------~~~~~r~~~d~kv~~vc~~vr~~l~~--~~~~~~~~ 794 (1265)
T KOG1920|consen 726 LKQINRVNHLELFLTELKEEDVTKTMYSST--SGSGK-------QVYMSRDPYDNKVNSVCDAVRNALER--RAPDKFNL 794 (1265)
T ss_pred hccCCcHHHHHHHHhhcccchhhhhhcccc--ccccc-------eeEEeccchhhHHHHHHHHHHHHHhh--cCcchhhH
Confidence 999999999999999999999999999987 52211 12233344569999999999999999 56779999
Q ss_pred HHhHHhhcCCCccHHHHHHHHHHHHhhcccCCCCCCCCChhhHHHHHHHHHhhccHHHHHHHHHhccChhHHHHHHHHhc
Q 000736 836 CILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQ 915 (1323)
Q Consensus 836 ~ilT~~v~~~pp~le~aL~~i~~l~~~~~~~~~~~~~~~~~~ae~alk~l~~L~d~~~Ly~~ALg~yD~~lal~VAq~sq 915 (1323)
+|||+|||+.||++|+||++|+++++.+ ..++|++||+|||||||+|.|||+|||+|||+||++|||+||
T Consensus 795 ~ilTs~vk~~~~~ie~aL~kI~~l~~~~----------~~~~ad~al~hll~Lvdvn~lfn~ALgtYDl~Lal~VAq~Sq 864 (1265)
T KOG1920|consen 795 FILTSYVKSNPPEIEEALQKIKELQLAQ----------VAVSADEALKHLLFLVDVNELFNSALGTYDLDLALLVAQKSQ 864 (1265)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHhcc----------cchhHHHHHHHHHhhccHHHHHHhhhcccchHHHHHHHHHhc
Confidence 9999999999999999999999998621 367999999999999999999999999999999999999999
Q ss_pred CCcccchHhHHHHhcCCchhccccHHHHhcCHHHHHHHHHHcCCCcHHHHHHHHHHHhcchHHHHhhc-CCcHHHHHHHH
Q 000736 916 RDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI-TDPAKMEQVLE 994 (1323)
Q Consensus 916 kDPkeYLpfL~~L~~l~~~~~~~~Id~~L~rye~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~-~d~~~~~~i~~ 994 (1323)
|||||||||||+|++||+++|+|+||+|||||++|+.||++||+.+|++|++|+++| +||++||.|| +|+++++.+++
T Consensus 865 kDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh-~Ly~~aL~ly~~~~e~~k~i~~ 943 (1265)
T KOG1920|consen 865 KDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKH-GLYDEALALYKPDSEKQKVIYE 943 (1265)
T ss_pred cChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhc-ccchhhhheeccCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998999999999999 9999999999 99999999999
Q ss_pred HHHHHHhcccCHHHHHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000736 995 AWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIAL 1074 (1323)
Q Consensus 995 ~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~ag~W~~al~lA~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~ 1074 (1323)
+||+||++.+.|++|+.+|++||+.+||++||.++|+|++|+++|.++..+++++..++++|+..|.++|+|.|||++.+
T Consensus 944 ~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~ 1023 (1265)
T KOG1920|consen 944 AYADHLREELMSDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILL 1023 (1265)
T ss_pred HHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHhcCHHHHHHHHHhcCCchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HhHH
Q 000736 1075 DYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITK-VKHASLECASSLIGEYKEGLEKVGKYLTRYLAVRQRR-LLLV 1152 (1323)
Q Consensus 1075 ~yl~d~e~Av~~~i~~~~w~eA~rla~~~~~~dLie~-V~~~l~e~~~~~~e~l~e~~~~~~k~~~RL~~vR~~k-~~~~ 1152 (1323)
+||+|+++||.+||+|..|++|+|+|.++++.|++++ ++|+++|++.++++.|++++++|.+|++||++||++| ++|.
T Consensus 1024 e~~sd~~~av~ll~ka~~~~eAlrva~~~~~~d~iee~l~~al~e~~~~~~~~L~~~k~~f~~yk~RLl~vRe~k~~~~~ 1103 (1265)
T KOG1920|consen 1024 EYLSDPEEAVALLCKAKEWEEALRVASKAKRDDIIEEVLKPALLEAFGEVLEFLEDVKEQFVKYKKRLLVVRENKEKRPE 1103 (1265)
T ss_pred HHhcCHHHHHHHHhhHhHHHHHHHHHHhcccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh
Confidence 9999999999999999999999999999999999999 9999999999999999999999999999999999999 8888
Q ss_pred hhccccccCCCCCCCCcccccccccccCceeecCCccCccccccccccccchhhHHHhccCCCCCCChhhhHHHHHHhhc
Q 000736 1153 AKLQSEDRSMNDLDDDTVSETSSTFSGMSVYTTGTRKSSAASIKSTAASKARESKRQRNRGKIRPGSPGEEMALVDHLKG 1232 (1323)
Q Consensus 1153 ~~~~~~~~~~~~~~~D~~S~~ss~~s~~s~yt~~~~~~s~~s~~ss~rs~k~rrk~erk~~~~k~Gs~~Ee~~Lv~~l~~ 1232 (1323)
+ |+++|. ..+.++|++|++||..+| +.|| |++.+ |.+| +||+|||||.||||+||||||||||+|||++|++
T Consensus 1104 ~-~~~~ev-~~d~d~dlas~ssS~~~~-s~ys-G~sr~---S~~s-~~tsKnrR~~ERKr~s~K~G~~yEd~aLl~~L~~ 1175 (1265)
T KOG1920|consen 1104 A-FADGEV-EHDLDDDLASESSSTNSG-SQYS-GSSRS---SAIS-ARTSKNRRKLERKRASLKEGGPYEDEALLNALSE 1175 (1265)
T ss_pred h-hhcccc-Cccccccccccccccccc-cccc-CCCCc---cccc-hhhhhcchhHHHHhhccCCCCchhHHHHHHHHHH
Confidence 8 998887 347788999998887666 6776 54344 3455 8999999999999999999999999999999999
Q ss_pred -cccccchhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcchhc----cccCcHHHHHHHHhhcc
Q 000736 1233 -MSLTVGAKQELKSLVVFLVMLGEVDTARKLQDTGETFQLSQMAAIKLAEDTMSIDIIN----EHAHNMERYVQIVKLES 1307 (1323)
Q Consensus 1233 -~~~~~~~~~e~~~Ll~~L~~~~~~~~A~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 1307 (1323)
+.+++++++|+++||++|+++||+|+|++||++|++ .+++|+.+++|.+.. ....+-.+++|+...++
T Consensus 1176 ~~~~le~~r~E~~~Ll~~l~~~g~~eqa~~Lq~~f~e-------v~~~i~~~~~eI~~~~~s~~~~~~gpn~~qk~~~p~ 1248 (1265)
T KOG1920|consen 1176 IARRLENIRNELKRLLEVLVTFGMDEQARALQKAFDE-------VLQAIQASLDEIWTVELSLNSHLLGPNDPQKTPRPA 1248 (1265)
T ss_pred HHHHhhcccHHHHHHHHHHHHcCCcHHHHHHHHHHHH-------HHHHHHhhhhhhcChhhhccccccCCcccccCcCCC
Confidence 999999999999999999999999999999999999 555555555552222 11222233667655566
Q ss_pred CCCccceeeeecccCC
Q 000736 1308 QNSEAFSWRSKVFLSP 1323 (1323)
Q Consensus 1308 ~~~~~~~w~~~~~~~~ 1323 (1323)
++...++|..++..|+
T Consensus 1249 ~~~p~~~~~~kl~i~~ 1264 (1265)
T KOG1920|consen 1249 LDSPLFSPFPKLVIPD 1264 (1265)
T ss_pred CCCcccccchhhhcCC
Confidence 6888999999988764
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-179 Score=1712.02 Aligned_cols=870 Identities=34% Similarity=0.570 Sum_probs=740.1
Q ss_pred CcCceeccccccccccccccc-ceeEEeeecCCCEEEEEeCCCcE---EEEecccccccccce-eeccccccccccCCCC
Q 000736 1 MNNLKLCAEVPLNLELQSKDE-ILQFSALDIEQNRLFFASSANNI---YSAQLSSFQNERASI-KTAISAEIEHIDLEPG 75 (1323)
Q Consensus 1 MrNL~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~l~~~s~~~~i---~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~ 75 (1323)
||||++++++.+.++...+++ .+.+.+||++++.+|++.+.+.+ +.++. ..+....+ +.+++.. .+..++
T Consensus 1 MRNL~~~~~~~~~~~~~~~~~~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~--~~~~~~~~~l~s~~~~---~~~~~~ 75 (928)
T PF04762_consen 1 MRNLRLLRRGEFKLESQSGPDLPITATAFDSDSDSIYFVLGPNEIDYVIELDR--FSQDGSVEVLASWDAP---LPDDPN 75 (928)
T ss_pred CCCcEEeeeeeEeccccCCcccccceEEEecCCCeEEEEECCCCcceEEEEEe--eccCCceeEEEecccc---CCcCCC
Confidence 999999999999877765422 78999999999999999875544 45555 34333111 2222211 113457
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEE----eCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceee
Q 000736 76 DSITAFDYLMEKEALIVGTSSGLLLLH----SVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY 151 (1323)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw----~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~ 151 (1323)
+.|++++|.+|...||+++++|+|.++ +.++..+|++|.+++||.|++||||+++||++|++++|++|+++|++++
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~ 155 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPIS 155 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEE
Confidence 899999999999999999999999999 7888899999999999999999999999999999999999999999999
Q ss_pred eeeecccC--CCceec------cCcccc------------------------CCCCeEEEEEecCCcEEEEeeccccccC
Q 000736 152 ENPLEELA--EGFDVH------EPELSS------------------------SFSFKSPISWRGDGKYFATLSEFCNSSK 199 (1323)
Q Consensus 152 e~~l~~~~--~~~~Vs------~tqf~~------------------------~~~~i~~isWspDG~~lAtvss~d~~~~ 199 (1323)
|.+++.++ ..++|+ |||||| +|++.++|+|||||+||| +++.+++ .
T Consensus 156 E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFA-Vss~~~~-~ 233 (928)
T PF04762_consen 156 EVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFA-VSSVEPE-T 233 (928)
T ss_pred EeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEE-EEEEEcC-C
Confidence 99999887 778997 999982 456788999999999999 8888665 3
Q ss_pred C-CCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEecc-CCCCcEEE
Q 000736 200 L-HKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINE-QIDSTVEL 277 (1323)
Q Consensus 200 ~-d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~-~~~~~V~~ 277 (1323)
+ .|+||||+| +|++++++|+.+|++.+++|+|+|++||++++.++ +++|+||||||++||+|.++. +.+..|..
T Consensus 234 ~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~---~~~VvFfErNGLrhgeF~l~~~~~~~~v~~ 309 (928)
T PF04762_consen 234 GSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPD---RHDVVFFERNGLRHGEFTLRFDPEEEKVIE 309 (928)
T ss_pred CceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCC---CcEEEEEecCCcEeeeEecCCCCCCceeeE
Confidence 3 799999999 89999999999999999999999999999998654 789999999999999999985 55678999
Q ss_pred EEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCc-EEEEEccCCCcEEEEEecCCcEEEEEEEEeee--
Q 000736 278 LKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTA-- 354 (1323)
Q Consensus 278 laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~-- 354 (1323)
|+||+||++||++..|. ||||+++||||||||++.|+.... ..+.|||+.+++|++++.+|++..++|.|.++
T Consensus 310 l~Wn~ds~iLAv~~~~~----vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s 385 (928)
T PF04762_consen 310 LAWNSDSEILAVWLEDR----VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRS 385 (928)
T ss_pred EEECCCCCEEEEEecCC----ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEec
Confidence 99999999999999886 999999999999999999987655 66999999999999999989999999999998
Q ss_pred ----eCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCCCCcccc
Q 000736 355 ----VMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLED 430 (1323)
Q Consensus 355 ----~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~ 430 (1323)
++|.++|+||||+++++|||+.++||||||.++++++++|++|+|++++ ..+|+.++||+|.+|.++....+..
T Consensus 386 ~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~--~~~avl~~d~~l~~~~~~~~~~~~~ 463 (928)
T PF04762_consen 386 PGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSN--SRFAVLTSDGSLSIYEWDLKNMWSV 463 (928)
T ss_pred CCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCC--CeEEEEECCCCEEEEEecCCCcccc
Confidence 4578999999999999999999999999999999999999999999999 7799999999999999865433210
Q ss_pred cc---CCceeEe---eeccccccCcEEEEEEecCCeEEEEEecC-CCCeeEEEEeecccCccccchhhhhhhhccccccc
Q 000736 431 LE---GTEFVVE---ACISETAFGSVIHLIWLGSHLLLSVSHHG-PRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQ 503 (1323)
Q Consensus 431 ~~---g~~~~~~---~~~~~~~~~~v~~l~~~~d~~lla~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 503 (1323)
.. ...+... ..........+++++|..++.++++...+ ..+.+.++...-
T Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------------------- 520 (928)
T PF04762_consen 464 KPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDD----------------------- 520 (928)
T ss_pred cCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEecc-----------------------
Confidence 00 0001000 00012234579999999999988877665 334555554421
Q ss_pred ccccccccceeeeeecccCCcEEEEeeCCCCCceEEEEeeCCeEEEEeccccccCCCCCCCCCCCCCCCCceeEEEecCC
Q 000736 504 GLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTN 583 (1323)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~q~~dG~v~~~~~~~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~ 583 (1323)
......+......++.+..+..++ ....+++|+.+|+|+.+..... .....+||++|+|++++.++
T Consensus 521 -----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~G~v~~~~~~~~------~~~~~~fp~~c~~~~~~~~~-- 586 (928)
T PF04762_consen 521 -----SENSASVESSTEVDGVVLIISSSP-DSGSLYIQTNDGKVFQLSSDGE------LSQIVKFPQPCPWMEVCQIN-- 586 (928)
T ss_pred -----CCCceeEEEEeccCceEEEEeeCC-CCcEEEEEECCCEEEEeecCCC------ccccccCCCCCcEEEEEEEC--
Confidence 111333445566677777776655 4446999999999998865431 12237999999999999987
Q ss_pred CC-CcceEEEEcCCCceeeCCEeeecCceeEEEeccCccccceEEEEEeeCCeEEEEEcCccccccccccccccccccCc
Q 000736 584 GP-LKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNR 662 (1323)
Q Consensus 584 ~~-~~~~~~gL~~~~~L~~~~~~~~~~~tSf~~~~~~~~~~~~~Ll~tT~~~~l~~v~l~~~~~~~~~~~~~~~~~~~~~ 662 (1323)
+. .+.++|||+++|+||+|+++||+|||||+++++ ||||||.+|+|+||||. ....+++++.+. ..
T Consensus 587 ~~~~~~~~~GLs~~~~Ly~n~~~la~~~tSF~v~~~-------~Ll~TT~~h~l~fv~L~-~~~~~l~~~~~~----~~- 653 (928)
T PF04762_consen 587 GSEDKRVLFGLSSNGRLYANSRLLASNCTSFAVTDS-------FLLFTTTQHTLKFVHLN-SSVEDLEIPPDS----PE- 653 (928)
T ss_pred CccceeEEEEECCCCEEEECCEEEecCCceEEEEcC-------EEEEEecCceEEEEECc-CchhhcccccCc----cc-
Confidence 40 023899999999999999999999999999999 99999999999999998 233444544332 11
Q ss_pred cccccccccccccCCCEEEEEeCCCCcEEEEEeCCCceeeccchhhhHHHHHHHHhcccHHHHHHHHHhccccccEEEec
Q 000736 663 RKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDH 742 (1323)
Q Consensus 663 ~~~~~~e~~R~vErGs~iV~~~p~~~~~vVLQmpRGNLEti~PR~lvL~~i~~~l~~~~y~~Af~~~R~hRIdlNll~D~ 742 (1323)
..+||++|+||||||||+|+|++ ++||||||||||||||||+|||+.||++|++++|++||.+||||||||||||||
T Consensus 654 --~~~de~~R~VERGsriVt~vp~~-~~vVLQmPRGNLEtI~PR~LVL~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh 730 (928)
T PF04762_consen 654 --NSYDERCRRVERGSRIVTAVPSD-TSVVLQMPRGNLETIYPRALVLAGIRKLLDAKDYKEAFELCRKHRIDLNLLYDH 730 (928)
T ss_pred --cccccccccCccCCEEEEEeCCC-ceEEEEcCCCchhhhccHhHHHHHHHHHHhhccHHHHHHHHHHhccccceEEEC
Confidence 11589999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHhHHHHHhhcCCcchhhHHHhhccCCccccccccccccccCCccccccCCCcccccccCCCcHHHHHHHHHHH
Q 000736 743 CGWQAFLQSASEFVRQVNNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKA 822 (1323)
Q Consensus 743 ~~p~~Fl~~i~~Fv~qv~~~~~l~lFls~L~~edvt~t~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~KV~~iC~a~~~~ 822 (1323)
| |++||+||+.||+||++++|||||||+|+|||||+|||+++ +. ...... ..........++|||+||+|||++
T Consensus 731 ~-p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt~tmY~~~--~~--~~~~~~-~~~~~~~~~~~~KVn~ICdair~~ 804 (928)
T PF04762_consen 731 N-PEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVTKTMYKDT--YP--PSSEAQ-PNSNSSTASSESKVNKICDAIRKA 804 (928)
T ss_pred C-HHHHHHHHHHHHHhcCCHHHHHHHHHhcccccccccccccc--cc--cccccc-cccccCCCccccHHHHHHHHHHHH
Confidence 9 99999999999999999999999999999999999999999 61 111000 011111223579999999999999
Q ss_pred HhhcCCCCCcchhHHhHHhhcCCCccHHHHHHHHHHHHhhcccCCCCCCCCChhhHHHHHHHHHhhccHHHHHHHHHhcc
Q 000736 823 LEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLY 902 (1323)
Q Consensus 823 l~~~~~~~~~~~~~ilT~~v~~~pp~le~aL~~i~~l~~~~~~~~~~~~~~~~~~ae~alk~l~~L~d~~~Ly~~ALg~y 902 (1323)
|++. .++.+|+||||||||||+||+||+||++|++||++ +++.||+||||||||+|+|+||++|||||
T Consensus 805 l~~~-~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~-----------~~~~ae~alkyl~fLvDvn~Ly~~ALG~Y 872 (928)
T PF04762_consen 805 LEKP-KDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE-----------DPESAEEALKYLCFLVDVNKLYDVALGTY 872 (928)
T ss_pred hccc-ccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc-----------ChHHHHHHHhHheeeccHHHHHHHHhhhc
Confidence 9943 78999999999999999999999999999999976 68899999999999999999999999999
Q ss_pred ChhHHHHHHHHhcCCcccchHhHHHHhcCCchhccccHHHHhcCHHHHHHHHHHcC
Q 000736 903 DLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMG 958 (1323)
Q Consensus 903 D~~lal~VAq~sqkDPkeYLpfL~~L~~l~~~~~~~~Id~~L~rye~Al~~l~~~g 958 (1323)
||+||+||||||||||||||||||+|++||+++|||+||+|||||++||+||++||
T Consensus 873 Dl~Lal~VAq~SQkDPKEYLPfL~~L~~l~~~~rry~ID~hLkRy~kAL~~L~~~G 928 (928)
T PF04762_consen 873 DLELALMVAQQSQKDPKEYLPFLQELQKLPPLYRRYKIDDHLKRYEKALRHLSACG 928 (928)
T ss_pred CHHHHHHHHHHhccChHHHHHHHHHHHhCChhheeeeHhhhhCCHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999997
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-168 Score=1452.46 Aligned_cols=1149 Identities=23% Similarity=0.271 Sum_probs=940.0
Q ss_pred CcCceecccccccccccccccceeEEeeecCCCEEEEE----eCCCcEEEEecccccccccceeeccccccccc--cCCC
Q 000736 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFA----SSANNIYSAQLSSFQNERASIKTAISAEIEHI--DLEP 74 (1323)
Q Consensus 1 MrNL~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~----s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~ 74 (1323)
||||.-+....++ -.+ | ..-.+++|..+|.||+. |.|..|+....+ ..... +++..+ |+.
T Consensus 1 M~Nl~t~~~~~fp-t~s--g-~~~~l~fdsv~D~iyi~c~l~s~d~Giev~~~s-~~~d~--------s~l~~F~ip~f- 66 (1243)
T COG5290 1 MENLFTRYMSTFP-TAS--G-DEDELGFDSVGDWIYITCVLGSTDKGIEVAKES-SIYDE--------SGLKRFEIPFF- 66 (1243)
T ss_pred CcchHhhhhccCC-CCC--C-ChHHhcccccCceEEEEeecCCCCCCeeeeeec-cccch--------hheeEeccCCc-
Confidence 9999998888774 333 4 55678889999999975 345566655552 11111 113322 232
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCC-C---CeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCcee
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVD-G---NATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLL 150 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~-~---~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~ 150 (1323)
.+.+.++.|+.+-.+++..-..|+|+..-.+ + -.++++|.+++||.+++||.|.+++++++++.+|.+|++.||++
T Consensus 67 ~dkl~s~~hf~~~~~~~f~~~~gDii~~~~dp~p~e~~~eivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~fd~i 146 (1243)
T COG5290 67 PDKLLSFKHFHVLTFEYFLIDEGDIIHLVNDPTPAELEMEIVGKVSNGIVAASWSADEKTWCVVTSTREILLFDKYFDPI 146 (1243)
T ss_pred chHhhhhhhhhhhheeeEEecCCcEEEEEcCCCcccchhhhhccccCceEEEeeccCCceEEEEEcCceEEEEecccccc
Confidence 3789999999999999999999998764332 2 34679999999999999999999999999999999999999999
Q ss_pred eeeeecccC---CCceec------cCcccc-----------------------CCCCeEEEEEecCCcEEEEeecccccc
Q 000736 151 YENPLEELA---EGFDVH------EPELSS-----------------------SFSFKSPISWRGDGKYFATLSEFCNSS 198 (1323)
Q Consensus 151 ~e~~l~~~~---~~~~Vs------~tqf~~-----------------------~~~~i~~isWspDG~~lAtvss~d~~~ 198 (1323)
++..+...+ -+++|+ +|||+| -++...-|+|+||.+|++ ++....
T Consensus 147 se~~L~~~dl~ef~khi~VgWgkketqfrgk~~raqlrdptmp~~vD~G~l~avd~~k~~i~wrgD~~y~~-v~r~Ee-- 223 (1243)
T COG5290 147 SEYHLKKSDLVEFGKHIRVGWGKKETQFRGKGARAQLRDPTMPYMVDYGDLFAVDTNKKIIFWRGDTEYNL-VGRSEE-- 223 (1243)
T ss_pred chhhcchhHHHHhccceEeeecccchhccccchhhhccCCCCcccccccceeEeeCCceEEEEccCcceee-ecchhc--
Confidence 999988776 467776 899983 234557799999999999 887653
Q ss_pred CCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEE
Q 000736 199 KLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELL 278 (1323)
Q Consensus 199 ~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~l 278 (1323)
..+|.+|||.| +|++.+.++|.+|..+.++|.|+|..+|+-+.|+. ....+|.|||+||++||+|.++.+-+..+..+
T Consensus 224 ~prra~rvysr-eg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~-~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~ 301 (1243)
T COG5290 224 RPRRAFRVYSR-EGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGC-STSESVIFFERNGLRHGEFDLRVGCDEKAFLE 301 (1243)
T ss_pred ccccceeeecc-ccccccccCCcccchhccccccCCceeeeeccCCC-CCcceEEEEccCCcccCCccccCCchhhhhhh
Confidence 45789999999 99999999999999999999999999999986632 33568999999999999998886656788999
Q ss_pred EEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEe------
Q 000736 279 KWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWT------ 352 (1323)
Q Consensus 279 aWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~------ 352 (1323)
+|+..+++||++..+. |+||+++|||||||+++..++ ...+.|||+...+|.... .+.+....|...
T Consensus 302 ~wn~~s~vlav~~~n~----~~lwttkNyhWYLK~e~~ip~--~s~vkwhpe~~nTl~f~d-~~~I~~V~f~~k~~~~~s 374 (1243)
T COG5290 302 NWNLLSTVLAVAEGNL----LKLWTTKNYHWYLKVERQIPG--ISYVKWHPEEKNTLLFRD-GERILRVFFSEKKTHHGS 374 (1243)
T ss_pred hhhHHHHHHHHhhcce----EEEEEccceEEEEEEeecCCC--cceeeeccccCcEEEEec-CCeEEEEEeehhhhcCCc
Confidence 9999999999997775 999999999999999997642 367899999999887754 355554444322
Q ss_pred eeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCCCCcccccc
Q 000736 353 TAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLE 432 (1323)
Q Consensus 353 ~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~ 432 (1323)
..|.|.|+..||||+.+++|||...++|||||.+.+.++.+|..|+-|... ...|++..| .+..+.++..+-+...
T Consensus 375 ~~p~d~g~~~ViDGs~~l~Tplsl~n~PPPm~~~~~~~d~NV~dv~~s~~~--~~~aa~~~d-rli~f~~~s~e~i~k~- 450 (1243)
T COG5290 375 EYPFDNGTSYVIDGSYMLYTPLSLKNLPPPMFSVRVGFDTNVVDVFPSFAE--KKGAALLRD-RLIMFRWDSEEFINKR- 450 (1243)
T ss_pred ccCccCCceEEEcCceEEecchhhhcCCCCeEEEEecCCCceeeeccchhh--hhHhhhccc-eeEEEecCcHHHHHHh-
Confidence 227889999999999999999999999999999999999999998876665 677877666 4555666543222100
Q ss_pred CCceeEeeeccccccC---cEEEEEEecCCeEEEEEecCCCCeeEEEEeecccCccccchhhhhhhhccccccccccccc
Q 000736 433 GTEFVVEACISETAFG---SVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCA 509 (1323)
Q Consensus 433 g~~~~~~~~~~~~~~~---~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 509 (1323)
.+| .....+ .+.++.+..+|..+...- .++-..++-+.. + | ...|
T Consensus 451 -~ef------~~sef~s~v~f~~~l~l~~~~v~ll~d--tnn~s~~~i~~~-~---------d-------~~e~------ 498 (1243)
T COG5290 451 -TEF------LESEFDSIVLFDGFLVLKSGHVFLLKD--TNNESDTYITRN-G---------D-------VDER------ 498 (1243)
T ss_pred -ccc------cHHhhhhhccccceEEecCceEEEEec--cCCCcceEEeec-C---------c-------ccch------
Confidence 011 111111 356777777776544332 122222222211 1 1 1100
Q ss_pred ccceeeeeecccCCcEEEEeeCCCCCceEEEEeeCCeEEEEeccccccCCCCCCCCCCCCCCCCceeEEEecCCCCCcce
Q 000736 510 GWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPL 589 (1323)
Q Consensus 510 ~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~q~~dG~v~~~~~~~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~ 589 (1323)
........ ...++. .+......++.++.+|+|..|+....+ -..++||++|..+.+.++. . ..+
T Consensus 499 -~k~~~ve~---~~~~~l--~~~~c~~~l~y~t~~G~v~~yn~e~kl------~e~~kfp~~v~df~v~pVH--~--t~v 562 (1243)
T COG5290 499 -KKRGTVET---RRTSTL--VHQLCQTLLRYGTCVGVVKHYNFEEKL------YELLKFPNGVIDFSVDPVH--S--TLV 562 (1243)
T ss_pred -hhccceee---eeeehh--hHHHHHHHHhhcccceeEEEecchhhh------HHHhhCCCceeEEEeeccc--c--cee
Confidence 00000000 011111 111145667899999999999653311 1245899999999998876 3 457
Q ss_pred EEEEcCCCceeeCCEeeecCceeEEEeccCccccceEEEEEeeCCeEEEEEcCccccccccccccccccccCcccccccc
Q 000736 590 LFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENIS 669 (1323)
Q Consensus 590 ~~gL~~~~~L~~~~~~~~~~~tSf~~~~~~~~~~~~~Ll~tT~~~~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e 669 (1323)
.||+++.|+||++..++++.|+||-.|.. |++|||++|.|.||||... ++++..-.++.+ .-.||
T Consensus 563 ~igit~~g~lfa~qvll~~~V~s~~~T~~-------FvlftTt~n~l~Fvhl~st-~~~l~~Veeg~v-------~~~dE 627 (1243)
T COG5290 563 AIGITDIGQLFALQVLLKKSVFSHNGTKL-------FVLFTTTENILSFVHLEST-FKPLITVEEGTV-------RFFDE 627 (1243)
T ss_pred eeecccHHHHHHHHHHHHhhhheeeccee-------EEeecchhhhhheEEeecc-cccceeecccch-------hhhhh
Confidence 89999999999999999999999999999 9999999999999999754 666665333211 12589
Q ss_pred ccccccCCCEEEEEeCCCCcEEEEEeCCCceeeccchhhhHHHHHHHHhcccHHHHHHHHHhccccccEEEecCCHHHHH
Q 000736 670 YINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFL 749 (1323)
Q Consensus 670 ~~R~vErGs~iV~~~p~~~~~vVLQmpRGNLEti~PR~lvL~~i~~~l~~~~y~~Af~~~R~hRIdlNll~D~~~p~~Fl 749 (1323)
++|.|||||++|.++|+. +.||||||||||||||||+|||+.||++|.+++|++||..||+|||||||++||+ |+.|+
T Consensus 628 r~r~vergs~~v~~lpsk-~~vVlq~tRGnLETiyPrImvLa~Vrk~i~akkYkdAf~vCrthrv~l~Il~Dyd-pelfi 705 (1243)
T COG5290 628 RKRSVERGSHKVELLPSK-DFVVLQVTRGNLETIYPRIMVLAFVRKLIAAKKYKDAFDVCRTHRVPLGILLDYD-PELFI 705 (1243)
T ss_pred hHHHhhhcceeeEeeccc-ceEEEecccCcceeecceeeeHHHHHHHHHHhhhhHHHHHHHheeeccceeecCC-hHHHH
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HhHHHHHhhcCCcchhhHHHhhccCCccccccccccccccCCccccccCCCcccccccCCCcHHHHHHHHHHHHhhcCCC
Q 000736 750 QSASEFVRQVNNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPE 829 (1323)
Q Consensus 750 ~~i~~Fv~qv~~~~~l~lFls~L~~edvt~t~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~KV~~iC~a~~~~l~~~~~~ 829 (1323)
+|++.||.|+.++|||+||+++|+++|||+|||... .++ . +.........+|||.+|+++|+.|++. .+
T Consensus 706 enlevFv~~~~rvdyl~lF~~~L~~ddvt~~~ys~i--skS-~-------q~~~~~k~fD~kvnl~ck~~rehl~s~-~y 774 (1243)
T COG5290 706 ENLEVFVTECRRVDYLSLFSEALQRDDVTKTDYSFI--SKS-E-------QARRFRKVFDLKVNLECKDTREHLESL-IY 774 (1243)
T ss_pred hhHHHHHHhhhhhhHHHHHHHhcChhhccccchhhh--hHH-H-------HHHHHHHHhcchhhhccHHHHHHHHhh-hc
Confidence 999999999999999999999999999999999876 321 0 111122234589999999999999986 78
Q ss_pred CCcchhHHhHHhhcCCCccHHHHHHHHHHHHhhcccCCCCCCCCChhhHHHHHHHHHhhccHHHHHHHHHhccChhHHHH
Q 000736 830 SPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAI 909 (1323)
Q Consensus 830 ~~~~~~~ilT~~v~~~pp~le~aL~~i~~l~~~~~~~~~~~~~~~~~~ae~alk~l~~L~d~~~Ly~~ALg~yD~~lal~ 909 (1323)
.++|+|+|+|||++.+||++++||.+|+.|-. ..++.+++++|||||+|+|-+|+.||++||+.||++
T Consensus 775 ~d~~~qtiitayl~~np~n~~aal~~is~l~r------------~se~~d~~v~~lCfl~dvn~~~~~aLsLyd~slall 842 (1243)
T COG5290 775 NDESIQTIITAYLIGNPGNGKAALMRISPLSR------------CSESLDEDVKNLCFLRDVNFFNEFALSLYDKSLALL 842 (1243)
T ss_pred cchhHHHHHHHHHhcCCcchHHHHhhhhhhhh------------ccccchHHHHhHhhhhhHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999998842 356788999999999999999999999999999999
Q ss_pred HHHHhcCCcccchHhHHHHhcCCchhccccHHHHhcCHHHHHHHHHHcCCCcHHHHHHHHHHHhcchHHHHhhc-CCcHH
Q 000736 910 VALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI-TDPAK 988 (1323)
Q Consensus 910 VAq~sqkDPkeYLpfL~~L~~l~~~~~~~~Id~~L~rye~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~-~d~~~ 988 (1323)
|||+|||||+||||||++++++++.+++|.||+||++|++||.|+.+.- .-++|.++|+..| .+|+.+|.|| +|.+.
T Consensus 843 iaq~sqkdpReylpfl~e~qd~e~lrrkf~Id~yl~~ye~ALghl~E~~-n~~~Ev~~yi~~h-dly~~~l~lyrYd~e~ 920 (1243)
T COG5290 843 IAQLSQKDPREYLPFLVERQDLEALRRKFSIDNYLSIYESALGHLNEDL-NVIREVMKYICRH-DLYDFLLLLYRYDGEL 920 (1243)
T ss_pred HHHHhccCchhhhhHHHHhhhhHHHHhHhchhhhHHHHHHHHHhhHhHH-HHHHHHHHHHHhc-cchHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999999999999999999873 3489999999999 9999999999 99999
Q ss_pred HHHHHHHHHHHHhcccCHHHHHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHhhcCCCHHHHHHHHHHHHH-HHHHcCChH
Q 000736 989 MEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCE-ELQALGKPG 1067 (1323)
Q Consensus 989 ~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~ag~W~~al~lA~~l~~~~~~~~~l~~~la~-~L~~~~~~~ 1067 (1323)
.+.++..||.||.+.+.+.+|+.+|+..|++.+|+.+|..|+.|++|+.++.+- .+.++...|+.|+. .+.+.++|.
T Consensus 921 Qk~~~nifa~~l~~n~~~~~aa~aye~~gK~~Ea~gay~sA~mwrec~si~~q~--~~~e~~~~AE~L~S~l~ve~R~~~ 998 (1243)
T COG5290 921 QKFKINIFAGNLVDNLYHISAAKAYEVEGKYIEAHGAYDSALMWRECGSISTQE--KGYEFNLCAELLPSDLLVEFRKAG 998 (1243)
T ss_pred hhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhh--cchHHHHHHHhhhhhHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999874 34567778888887 455777799
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCCchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000736 1068 EAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITK-VKHASLECASSLIGEYKEGLEKVGKYLTRYLAVRQ 1146 (1323)
Q Consensus 1068 eAa~i~~~yl~d~e~Av~~~i~~~~w~eA~rla~~~~~~dLie~-V~~~l~e~~~~~~e~l~e~~~~~~k~~~RL~~vR~ 1146 (1323)
+|+.+.+.|+.++.+|+.|+|+|.++.+|+++|......++.+. +.+.|.|.+....|.+++++.|++.|.+||+++|.
T Consensus 999 da~~i~l~yl~N~~eava~~ckgs~y~ea~~~a~~s~~~e~~k~~~~~~LgE~Fg~~~El~ad~~~qikSq~~rlrvlr~ 1078 (1243)
T COG5290 999 DAEKILLTYLENLYEAVAMDCKGSEYREAFCEAMVSRLVESEKHYEAGQLGEEFGGKPELAADEYVQIKSQGDRLRVLRD 1078 (1243)
T ss_pred CHHHHHHHHHhCHHHHHHHHcccccchHHHHHHHHhhhhhHHHHhhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999998877778777 99999999999999999999999999999999999
Q ss_pred Hh-HhHHhhccccccCCCCCCCCccccccccccc----CceeecCCccCccccccccccccchhhHHHhccCCCCCCChh
Q 000736 1147 RR-LLLVAKLQSEDRSMNDLDDDTVSETSSTFSG----MSVYTTGTRKSSAASIKSTAASKARESKRQRNRGKIRPGSPG 1221 (1323)
Q Consensus 1147 ~k-~~~~~~~~~~~~~~~~~~~D~~S~~ss~~s~----~s~yt~~~~~~s~~s~~ss~rs~k~rrk~erk~~~~k~Gs~~ 1221 (1323)
+| ++|.+ ++.+-. .....|| +|++++..|. +++|| ++.+++ -.| ++++||.||.||||++||||++|
T Consensus 1079 kk~e~p~a-~~~~~~-e~~t~dD-vs~a~~~~st~~s~~t~yt--k~~~~s--k~s-r~ttkN~rr~erkRargkkGt~y 1150 (1243)
T COG5290 1079 KKCEMPEA-REILRE-ELLTLDD-VSEAFVKYSTRLSALTEYT--KDECMS--KTS-RSTTKNMRRGERKRARGKKGTRY 1150 (1243)
T ss_pred hhhcChHH-HHhhhh-hhcCccc-hhhhhhhhhhHHHHHHHHh--cccccc--hhh-hhhhhhcccchhhhhcCCCCcee
Confidence 99 99999 554211 1223344 5776554333 34676 222332 245 89999999999999999999999
Q ss_pred hhHHHHHHhhc-cccccchhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCc
Q 000736 1222 EEMALVDHLKG-MSLTVGAKQELKSLVVFLVMLGEVDTARKLQDTGETFQLSQMAAIKLAEDTMSI 1286 (1323)
Q Consensus 1222 Ee~~Lv~~l~~-~~~~~~~~~e~~~Ll~~L~~~~~~~~A~~lq~~~~~~~~~~~~~~~~~~~~~~~ 1286 (1323)
||||||++|++ |.|+.+++.|+.+|+++|++|||.|||+++|+.|.+ ...+|+..+-+
T Consensus 1151 EeEylv~sirrli~rl~~~rpe~~rlve~l~r~nM~eqa~~~q~nF~e-------V~~~ik~~V~~ 1209 (1243)
T COG5290 1151 EEEYLVSSIRRLILRLVGWRPETERLVEILKRFNMEEQARAHQTNFDE-------VGRAIKTEVDS 1209 (1243)
T ss_pred hHHHHHHHHHHHHHHHhccChhHHHHHHHHHHcChHHHHHHHhhhHHH-------HHHHHhhccce
Confidence 99999999999 999999999999999999999999999999999999 55555554443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=318.86 Aligned_cols=819 Identities=16% Similarity=0.199 Sum_probs=480.1
Q ss_pred cccccccccceeEEeeecCCCEEEEEeCCCcEEEEeccccccccc----ceeecccc--ccccccCCCCCCEEEEEEecC
Q 000736 13 NLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERA----SIKTAISA--EIEHIDLEPGDSITAFDYLME 86 (1323)
Q Consensus 13 ~~~~~~~~~~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~----~~~~~l~~--~~~~~~~~~~~~V~~v~~spd 86 (1323)
++.++.+. ...|.+|+.+++-+.++..|+.+...-+...+-... ...+.|.. -|.+| .+.|..+.|.-.
T Consensus 8 ki~iPnnv-kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH----~~sV~vvTWNe~ 82 (1189)
T KOG2041|consen 8 KIGIPNNV-KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGH----NASVMVVTWNEN 82 (1189)
T ss_pred ccCCCCCc-eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccC----cceEEEEEeccc
Confidence 33454445 889999999999999999999666555521111110 01111111 13444 478999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeE-E--EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccC----
Q 000736 87 KEALIVGTSSGLLLLHSVDGNAT-E--VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELA---- 159 (1323)
Q Consensus 87 g~~La~as~dG~I~lw~~~~~~~-e--~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~---- 159 (1323)
.+.|-+.-.+|-|++|-+-.+.+ | +-....+-|.+|+|+.||+.++++-.||.|++=+-+++-+.+..+....
T Consensus 83 ~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv 162 (1189)
T KOG2041|consen 83 NQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHV 162 (1189)
T ss_pred cccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccce
Confidence 99999999999999998865543 2 2223356699999999999999999999998765554444333222111
Q ss_pred --------------CCc-eecc------------------CccccCCCCeEEEEEe--------cCCcEEEEeecccccc
Q 000736 160 --------------EGF-DVHE------------------PELSSSFSFKSPISWR--------GDGKYFATLSEFCNSS 198 (1323)
Q Consensus 160 --------------~~~-~Vs~------------------tqf~~~~~~i~~isWs--------pDG~~lAtvss~d~~~ 198 (1323)
++. ++-+ ..|......+..|.|. ||.-.|| +...
T Consensus 163 ~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~la-vcy~---- 237 (1189)
T KOG2041|consen 163 LWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLA-VCYA---- 237 (1189)
T ss_pred eecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEE-EEEc----
Confidence 000 1100 1111233456778884 6777888 6643
Q ss_pred CCCCEEEEEECCC-CceeeeeccCCCceeEEEEccCCCeEEEEecCCC---CCCCCeEEEEeCCCeeEEEEEeccCCCCc
Q 000736 199 KLHKRLKVWERDS-GTLQASSELKAFMGAVLEWMPSGANIAAVYDRKS---ENKCPSIVFYERNGLERSSFDINEQIDST 274 (1323)
Q Consensus 199 ~~d~~IrVWd~~~-G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~---~~~~~~V~~~e~nGl~~~~f~l~~~~~~~ 274 (1323)
++.++|-..++ .+..-... .-.+...-|+|+|..+|.++.+.. +...+.|.|+..-|...|.+..++ ..
T Consensus 238 --nGr~QiMR~eND~~Pvv~dt--gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg---~~ 310 (1189)
T KOG2041|consen 238 --NGRMQIMRSENDPEPVVVDT--GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPG---SC 310 (1189)
T ss_pred --CceehhhhhcCCCCCeEEec--ccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCC---ce
Confidence 35555543322 12211111 133577899999999999987643 122457999999998888776653 46
Q ss_pred EEEEEEccCCCeeEEEEccCCCCeEEEEEee-CCee-EEEeEEEEecCCcEEEEEccCCCc-EEEEEecCCcEEEEEEEE
Q 000736 275 VELLKWNCMSDLLAAVVRFEEYDSVKICFFS-NNHW-YLKYEIRYLRRDGIRFMWHPTKPL-QLICWTLDGQITTYNFIW 351 (1323)
Q Consensus 275 V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~-n~~w-ylkq~l~~~~~~~~~v~Wsp~~~~-~L~~~~~~g~~~~~~~~~ 351 (1323)
|.+|+|-..|-.+|.+... .|.+=+.. +|.| |...++.|-- =-++.|. .++ .|
T Consensus 311 It~lsWEg~gLriA~Avds----fiyfanIRP~ykWgy~e~TvVy~y-------~~~e~p~y~i~-------------Fw 366 (1189)
T KOG2041|consen 311 ITGLSWEGTGLRIAIAVDS----FIYFANIRPEYKWGYIEETVVYVY-------QKEELPQYGIM-------------FW 366 (1189)
T ss_pred eeeeEEcCCceEEEEEecc----eEEEEeecccceEEEeeeEEEEEE-------ccCCCcceEEE-------------EE
Confidence 9999999999999988654 46665554 7888 5544444311 1122221 011 12
Q ss_pred eeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCCCCccccc
Q 000736 352 TTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDL 431 (1323)
Q Consensus 352 ~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~ 431 (1323)
++.. +.+.++ ++ ....+++|+.+. -.|+.-..||.+.=++. ++..
T Consensus 367 dtk~---------nek~vK----------------~V---~~~~~~a~~~eh--CvL~~~~d~~~i~e~s~-----le~~ 411 (1189)
T KOG2041|consen 367 DTKT---------NEKTVK----------------TV---THFENMAFYREH--CVLINRQDDGVIPEYST-----LENR 411 (1189)
T ss_pred eccc---------Chhhhh----------------hh---cceeehheeccc--EEEEeccccCCCcchhh-----hhcc
Confidence 2211 011110 00 011234444443 33444333443332210 0000
Q ss_pred cCCceeEeeecc-----ccccCcEEE-EEEecCCeEEEEEecCCCCeeEEEEeecccCccc----cchhhhhhhhccccc
Q 000736 432 EGTEFVVEACIS-----ETAFGSVIH-LIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLL----GFYAQEIELACSEDH 501 (1323)
Q Consensus 432 ~g~~~~~~~~~~-----~~~~~~v~~-l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~----~~~~~e~~~~~~~~~ 501 (1323)
|..+...-|-+ +...-.++. +... ++..+++++. ....+|.+.... ..+ ....+|.. -+.|.
T Consensus 412 -~~~~~l~LCNSIGT~lD~kytdirP~Fv~v-n~~~vviAS~---e~~~iWhy~~pK-~~s~l~~~k~rkegr--~h~Dd 483 (1189)
T KOG2041|consen 412 -SRVYFLQLCNSIGTSLDYKYTDIRPKFVCV-NGICVVIASE---ERYFIWHYVLPK-FNSVLAGVKIRKEGR--FHGDD 483 (1189)
T ss_pred -cceEEEeeecccCCcCCCCcceeeeeEEEe-cceEEEEecc---ccEEEEEEeccc-hhhhhhhhhhccccc--ccCCC
Confidence 00111110100 000011211 1111 3344444443 466777654321 000 00111111 01122
Q ss_pred ccccccccccceeeeeecccCCcEEEEeeCCCCCceEEEEeeCCeEEEEeccccccCCCCCCCCCCCCCCCCceeEEEec
Q 000736 502 VQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVG 581 (1323)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~q~~dG~v~~~~~~~~~~~~~~~~~~~~fp~~c~~~~~~~~~ 581 (1323)
+|.-.....-.+.-++..+...+|.+++-+ .+.+.+....|.|+.|+.+.. ....+.|-.|...
T Consensus 484 tp~ga~d~~l~ys~kt~~G~~DpICAl~~s---dk~l~vareSG~I~rySl~nv-------~l~n~y~~n~~~y------ 547 (1189)
T KOG2041|consen 484 TPEGAQDRTLEYSTKTLLGSKDPICALCIS---DKFLMVARESGGIYRYSLNNV-------VLTNSYPVNPSIY------ 547 (1189)
T ss_pred CccchhhceeeccceeeccCCCcceeeeec---ceEEEEEeccCceEEEEecce-------eeeeccccCchhe------
Confidence 221100000011112345556778887753 466778889999999975431 0111233332221
Q ss_pred CCCCCcceEEEEcCCCceeeCCEeeecCceeEEEeccCccccceEEEEEeeCCeEEEEEcCccccccccccccccccccC
Q 000736 582 TNGPLKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGN 661 (1323)
Q Consensus 582 ~~~~~~~~~~gL~~~~~L~~~~~~~~~~~tSf~~~~~~~~~~~~~Ll~tT~~~~l~~v~l~~~~~~~~~~~~~~~~~~~~ 661 (1323)
.++=||+|= -|......+.+-|.+|.- .+
T Consensus 548 -----------------------~~~lNCnst------------RlAiId~~gv~tf~dLd~-d~--------------- 576 (1189)
T KOG2041|consen 548 -----------------------SIKLNCNST------------RLAIIDLVGVVTFQDLDY-DF--------------- 576 (1189)
T ss_pred -----------------------eEeeccCcc------------hhhhhhhhceeeeeeccc-cc---------------
Confidence 234455552 222223344444555420 00
Q ss_pred ccccccccccccccCCCEEEEEeCCCCcEEEEEeCCCceeeccchhhhHHHHHHHHhcccHHHHHHHHHhccccccEEEe
Q 000736 662 RRKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVD 741 (1323)
Q Consensus 662 ~~~~~~~e~~R~vErGs~iV~~~p~~~~~vVLQmpRGNLEti~PR~lvL~~i~~~l~~~~y~~Af~~~R~hRIdlNll~D 741 (1323)
+|-.++...-.+ -| -|-+ + ++ ..+--.-|.+|-|.|+ .|++
T Consensus 577 --------------~g~ql~~~~~~e-rr-----------------DVWd-~-~W--a~dNp~llAlmeKtrm---yifr 617 (1189)
T KOG2041|consen 577 --------------DGDQLKLIYTSE-RR-----------------DVWD-Y-EW--AQDNPNLLALMEKTRM---YIFR 617 (1189)
T ss_pred --------------Ccceeeeeehhh-hh-----------------hhhh-h-hh--ccCCchHHhhhhhceE---EEec
Confidence 011111111111 00 0000 0 00 1111234567888887 5666
Q ss_pred cCCHHHHHHhHHHHHhhcCCcchhhHHHhhccCCccccccccccccccCCccccccCCCcccccccCCCc---HHHHHHH
Q 000736 742 HCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNK---VSSVLLA 818 (1323)
Q Consensus 742 ~~~p~~Fl~~i~~Fv~qv~~~~~l~lFls~L~~edvt~t~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~K---V~~iC~a 818 (1323)
-|.| .+++.-.-||++|= +=.+|.-+-..- +..|+ .++| |+..-.+
T Consensus 618 gndp----------eEp~s~sGyIc~Fe----dLeitsVlld~I--l~~pE---------------~pnk~~ii~~~iks 666 (1189)
T KOG2041|consen 618 GNDP----------EEPSSVSGYICLFE----DLEITSVLLDKI--LLTPE---------------NPNKTCIIEVMIKS 666 (1189)
T ss_pred CcCc----------cccccccceEEEee----ceEEEEEEHhhH--hcCcC---------------CCCcceEEEEEehh
Confidence 6634 36777778888771 101111010000 10011 0011 1111222
Q ss_pred HHHHHhhcCCCCCcchhHHhHHhhcCCCccHHHHHHHHHHHHhhcccCCCCCCCCChhhHHHHHHHHHhhccHHHHHHHH
Q 000736 819 IRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAA 898 (1323)
Q Consensus 819 ~~~~l~~~~~~~~~~~~~ilT~~v~~~pp~le~aL~~i~~l~~~~~~~~~~~~~~~~~~ae~alk~l~~L~d~~~Ly~~A 898 (1323)
+|+.+.= +-+. .||+|-+.|.. + | .|. + +.-|.+.|
T Consensus 667 lrD~~~L----------------ve~v--gledA~qfiEd---n-------P---Hpr---------L----WrllAe~A 702 (1189)
T KOG2041|consen 667 LRDVMNL----------------VEAV--GLEDAIQFIED---N-------P---HPR---------L----WRLLAEYA 702 (1189)
T ss_pred hhhHHHH----------------HHHh--chHHHHHHHhc---C-------C---chH---------H----HHHHHHHH
Confidence 3333210 0111 15555444320 0 0 111 1 23456777
Q ss_pred HhccChhHHHHHHHHhcCCcccc--hHhHHHHhcC-CchhccccHHHHhcCHHHHHHHHHHcCCCcHHHHHHHHHHHhcc
Q 000736 899 LGLYDLNLAAIVALNSQRDPKEF--LPYLQELESM-PPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQL 975 (1323)
Q Consensus 899 Lg~yD~~lal~VAq~sqkDPkeY--LpfL~~L~~l-~~~~~~~~Id~~L~rye~Al~~l~~~g~~~~~~ale~~~~~~~l 975 (1323)
|-..+|+. |++|+..+++| +.|+++|+.+ .+..||++|-.|.|+||+|.+.|.++ +|.|.|++|+++. +.
T Consensus 703 l~Kl~l~t----AE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~--drrDLAielr~kl-gD 775 (1189)
T KOG2041|consen 703 LFKLALDT----AEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDA--DRRDLAIELRKKL-GD 775 (1189)
T ss_pred HHHHhhhh----HhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhcc--chhhhhHHHHHhh-hh
Confidence 76666664 79999999999 9999999999 89999999999999999999999998 7799999999999 99
Q ss_pred hHHHHhhc------CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHhhcCCCHHHH
Q 000736 976 FPLGLKLI------TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEV 1049 (1323)
Q Consensus 976 y~~AL~L~------~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~ag~W~~al~lA~~l~~~~~~~ 1049 (1323)
|.+.++|+ .|++.....++..|+|+.+..+|++|+.+|.++|+.+.-++||++..++.++..+|+.++.+
T Consensus 776 wfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~---- 851 (1189)
T KOG2041|consen 776 WFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPED---- 851 (1189)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcc----
Confidence 99999999 25667889999999999999999999999999999999999999999999999999999755
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCCchh
Q 000736 1050 AKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDL 1108 (1323)
Q Consensus 1050 ~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~e~Av~~~i~~~~w~eA~rla~~~~~~dL 1108 (1323)
.+++..||+.|.+.|++++|.++|++ .++++.||..|++.++|.+|+.||+.|..|++
T Consensus 852 s~llp~~a~mf~svGMC~qAV~a~Lr-~s~pkaAv~tCv~LnQW~~avelaq~~~l~qv 909 (1189)
T KOG2041|consen 852 SELLPVMADMFTSVGMCDQAVEAYLR-RSLPKAAVHTCVELNQWGEAVELAQRFQLPQV 909 (1189)
T ss_pred cchHHHHHHHHHhhchHHHHHHHHHh-ccCcHHHHHHHHHHHHHHHHHHHHHhccchhH
Confidence 67999999999999999999999999 99999999999999999999999999997764
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-34 Score=326.21 Aligned_cols=743 Identities=16% Similarity=0.187 Sum_probs=434.9
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEeCCCC-eEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeee
Q 000736 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGN-ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1323)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~~~~~-~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~ 154 (1323)
..|.+++|-|||..|++|. +..+.+||.+.| .+..+..|.+.|.|+|||.||+.+|+|+.|+.|++|+..-+-+-..
T Consensus 13 hci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkY- 90 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKY- 90 (1081)
T ss_pred cchheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeee-
Confidence 4799999999999999875 567899999764 5566666799999999999999999999999999987432222111
Q ss_pred ecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCC
Q 000736 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG 234 (1323)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG 234 (1323)
.|.+.|.+++|+|=.+.|||++ . ..+-+|+.+. +-..... ....+.+.+|..||
T Consensus 91 ----------------SH~D~IQCMsFNP~~h~LasCs-L-------sdFglWS~~q-K~V~K~k-ss~R~~~CsWtnDG 144 (1081)
T KOG1538|consen 91 ----------------SHNDAIQCMSFNPITHQLASCS-L-------SDFGLWSPEQ-KSVSKHK-SSSRIICCSWTNDG 144 (1081)
T ss_pred ----------------ccCCeeeEeecCchHHHhhhcc-h-------hhccccChhh-hhHHhhh-hheeEEEeeecCCC
Confidence 4667889999999999999554 2 3567898833 2222111 23346889999999
Q ss_pred CeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCC-----eeEEEEccCCCCeEEEEEeeCCee
Q 000736 235 ANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSD-----LLAAVVRFEEYDSVKICFFSNNHW 309 (1323)
Q Consensus 235 ~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~-----~LA~~~~d~~~~~V~LW~~~n~~w 309 (1323)
+++|-|-.+ ++|.+-+++|...+...-|+.....|++|+|+|.+. ++|+..... |+-+++++...-
T Consensus 145 qylalG~~n------GTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~q---TLSFy~LsG~~I 215 (1081)
T KOG1538|consen 145 QYLALGMFN------GTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQ---TLSFYQLSGKQI 215 (1081)
T ss_pred cEEEEeccC------ceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccc---eeEEEEecceee
Confidence 999999875 468888998877665444444457899999999874 455554444 454444443110
Q ss_pred EEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeee-
Q 000736 310 YLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL- 388 (1323)
Q Consensus 310 ylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l- 388 (1323)
-....+.| ++.++..-|.|-..| ++..++.+..+. -+| |++. ++
T Consensus 216 gk~r~L~F---dP~CisYf~NGEy~L-iGGsdk~L~~fT---------------R~G--vrLG--------------Tvg 260 (1081)
T KOG1538|consen 216 GKDRALNF---DPCCISYFTNGEYIL-LGGSDKQLSLFT---------------RDG--VRLG--------------TVG 260 (1081)
T ss_pred cccccCCC---CchhheeccCCcEEE-EccCCCceEEEe---------------ecC--eEEe--------------ecc
Confidence 00001111 223444555554422 222233332110 011 2221 22
Q ss_pred cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCCCCccccccCCceeEeeecc---------cccc-----CcEEEEE
Q 000736 389 KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACIS---------ETAF-----GSVIHLI 454 (1323)
Q Consensus 389 ~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~---------~~~~-----~~v~~l~ 454 (1323)
+++.+||.|+..|++ +..++|..||||.-|++.-.. .+.+....+..-.++. .+.. +-|..++
T Consensus 261 ~~D~WIWtV~~~PNs--Q~v~~GCqDGTiACyNl~fST-VH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKia 337 (1081)
T KOG1538|consen 261 EQDSWIWTVQAKPNS--QYVVVGCQDGTIACYNLIFST-VHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIA 337 (1081)
T ss_pred ccceeEEEEEEccCC--ceEEEEEccCeeehhhhHHhH-hhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHH
Confidence 357899999999999 999999999999999975321 1111111110000000 0000 0011111
Q ss_pred EecCCeEEEEEecCCCCeeEEEEeecccCccccch-hhhhhhhcccccccccccccccceeeeeecccCCcEEEEeeCCC
Q 000736 455 WLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFY-AQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNA 533 (1323)
Q Consensus 455 ~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~ 533 (1323)
... .-||+- -+..+.+|.+.. ++.....| .+|- + ...++-....|+.
T Consensus 338 iYr--nrLAVQ---Lpeki~iYel~s-e~~~~mhY~v~ek-I----------------------~kkf~cSLlVVc~--- 385 (1081)
T KOG1538|consen 338 IYR--NRLAVQ---LPEKILIYELYS-EDLSDMHYRVKEK-I----------------------IKKFECSLLVVCA--- 385 (1081)
T ss_pred hhh--hhheec---ccceEEEEeccc-cccccchhHHHHH-H----------------------HhhccceEEEEEc---
Confidence 111 124432 235667776642 21111111 1110 0 0111111111211
Q ss_pred CCceEE-EEeeCCeEEEEeccc--c-ccCCCCCC-CCCCCCCCCCceeEEEecCCCCCcceEEEEcCCCceeeCCEeeec
Q 000736 534 KKYSAF-LQFHGGKISEYMSRV--G-LTGGALTH-DDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLHVSGKIVCN 608 (1323)
Q Consensus 534 ~~~~~~-~q~~dG~v~~~~~~~--~-~~~~~~~~-~~~~fp~~c~~~~~~~~~~~~~~~~~~~gL~~~~~L~~~~~~~~~ 608 (1323)
..++ -|...=..+.+.+-. . .|..-... ..+.=|. + - +.+++||.+.+-+-+
T Consensus 386 --~HiVlCqekrLqClDF~Gvk~ReW~M~S~iRYikV~GGP~----------g--R--EgL~vGlknGqV~ki------- 442 (1081)
T KOG1538|consen 386 --NHIVLCQEKRLQCLDFSGVKEREWQMESLIRYIKVIGGPP----------G--R--EGLLVGLKNGQVLKI------- 442 (1081)
T ss_pred --CeEEEEcccceeeecccchhhhhhhHHHHHHhhhhhcCCC----------C--c--ceeEEEecCCcEEEE-------
Confidence 1111 111111111111000 0 00000000 0001111 1 1 236777775443322
Q ss_pred CceeEEEeccCccccceEEEEEeeCCeEEEEEcCccccccccccccccccccCccccccccccccccCCCEEEEEeCCCC
Q 000736 609 NCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDE 688 (1323)
Q Consensus 609 ~~tSf~~~~~~~~~~~~~Ll~tT~~~~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~R~vErGs~iV~~~p~~~ 688 (1323)
.+.++ . =+|++|+..-.+|++++..- +.+.+-. |.|--+|.=+-++
T Consensus 443 -----F~dN~-----~-PiLl~~~~tAvrClDINA~R-~kLAvVD---------------------D~~~c~v~DI~t~- 488 (1081)
T KOG1538|consen 443 -----FVDNL-----F-PILLLKQATAVRCLDINASR-KKLAVVD---------------------DNDTCLVYDIDTK- 488 (1081)
T ss_pred -----EecCC-----c-hhheecccceeEEeeccCCc-ceEEEEc---------------------cCCeEEEEEccCC-
Confidence 22223 1 23455666677777775321 1111111 1111122222222
Q ss_pred cEEEEEeCCCceeeccchhhhHHHHHHHHhcccHHHHHHHHHhccccc---------------cEEEecCCHHHHHHhHH
Q 000736 689 AAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINF---------------NVIVDHCGWQAFLQSAS 753 (1323)
Q Consensus 689 ~~vVLQmpRGNLEti~PR~lvL~~i~~~l~~~~y~~Af~~~R~hRIdl---------------Nll~D~~~p~~Fl~~i~ 753 (1323)
-+.+|-|--|==+.+-.- .. .+|=+|.=.| .+.+-|+|...|-
T Consensus 489 -elL~QEpg~nSV~wNT~~------E~-----------MlcfT~~g~L~VR~~~~P~h~qk~~G~VvG~~gsk~FC---- 546 (1081)
T KOG1538|consen 489 -ELLFQEPGANSVAWNTQC------ED-----------MLCFTGGGYLNVRASTFPVHRQKLQGFVVGYNGSKIFC---- 546 (1081)
T ss_pred -ceEeecCCCceEEeeccc------cc-----------eEEEecCCceEEEeccCCcchhcceEEEEEecCceEEE----
Confidence 333444433322221100 00 0011111111 2333344333322
Q ss_pred HHHhhcCCcchhhHHHhhccCCccccccccccccccCCccccccCCCcccccccCCCcHHHHHHHHHHHHhhcCCCCCcc
Q 000736 754 EFVRQVNNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPESPSR 833 (1323)
Q Consensus 754 ~Fv~qv~~~~~l~lFls~L~~edvt~t~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~KV~~iC~a~~~~l~~~~~~~~~~ 833 (1323)
|+ |+ +..+++- +.....
T Consensus 547 ------------------L~--------------------------------------~~-----~i~~~ev--p~~~~m 563 (1081)
T KOG1538|consen 547 ------------------LH--------------------------------------VF-----SISAVEV--PQSAPM 563 (1081)
T ss_pred ------------------EE--------------------------------------ee-----eeecccc--cccccc
Confidence 00 00 0000000 111111
Q ss_pred hhHHhHHhhcCCCccHHHHHHHHHHHHhhcccCCCCCCCCChhhHHHHHHHHHhhccHHHHHHHHHhccChhHHHHHHHH
Q 000736 834 ELCILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALN 913 (1323)
Q Consensus 834 ~~~ilT~~v~~~pp~le~aL~~i~~l~~~~~~~~~~~~~~~~~~ae~alk~l~~L~d~~~Ly~~ALg~yD~~lal~VAq~ 913 (1323)
.|+ +-. -.+.+|++.- -+ . ....|+..|.+.||+..||+. |++
T Consensus 564 ~q~-----Iea--g~f~ea~~ia-cl--------------g-----------Vv~~DW~~LA~~ALeAL~f~~----ARk 606 (1081)
T KOG1538|consen 564 YQY-----IER--GLFKEAYQIA-CL--------------G-----------VTDTDWRELAMEALEALDFET----ARK 606 (1081)
T ss_pred hhh-----hhc--cchhhhhccc-cc--------------c-----------eecchHHHHHHHHHhhhhhHH----HHH
Confidence 111 000 0122222220 00 0 123488999999999999997 466
Q ss_pred hcCCccc--chHhHHHHhcC------CchhccccHHHHhcCHHHHHHHHHHcCCCcHHHHHHHHHHHhcchHHHHhhc--
Q 000736 914 SQRDPKE--FLPYLQELESM------PPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI-- 983 (1323)
Q Consensus 914 sqkDPke--YLpfL~~L~~l------~~~~~~~~Id~~L~rye~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~-- 983 (1323)
|.+.-++ ||-++-+|+++ |....+++|.+|.|+|.+|.++|.++|. -..|+||+.+. ++|+.|.+.+
T Consensus 607 AY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~G~--enRAlEmyTDl-RMFD~aQE~~~~ 683 (1081)
T KOG1538|consen 607 AYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRSGH--ENRALEMYTDL-RMFDYAQEFLGS 683 (1081)
T ss_pred HHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHcCc--hhhHHHHHHHH-HHHHHHHHHhhc
Confidence 6443333 57777788764 4578889999999999999999999997 49999999999 9999999999
Q ss_pred CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHc
Q 000736 984 TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQAL 1063 (1323)
Q Consensus 984 ~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~ag~W~~al~lA~~l~~~~~~~~~l~~~la~~L~~~ 1063 (1323)
+++++.+.+.++.|+|..+-++.+.||+|.++||+..||++.-...|.-+.++.+++++. ..+. +-+..+|.+|...
T Consensus 684 g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld--~~er-e~l~~~a~ylk~l 760 (1081)
T KOG1538|consen 684 GDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD--KAER-EPLLLCATYLKKL 760 (1081)
T ss_pred CChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc--hhhh-hHHHHHHHHHhhc
Confidence 899999999999999999999999999999999999999999999997778899999985 4454 5678899999999
Q ss_pred CChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCCchhHHHHH
Q 000736 1064 GKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVK 1113 (1323)
Q Consensus 1064 ~~~~eAa~i~~~yl~d~e~Av~~~i~~~~w~eA~rla~~~~~~dLie~V~ 1113 (1323)
+.+.-|++||.+ +||...-|+|+++.+.|.||++||++| |+++++|.
T Consensus 761 ~~~gLAaeIF~k-~gD~ksiVqlHve~~~W~eAFalAe~h--Pe~~~dVy 807 (1081)
T KOG1538|consen 761 DSPGLAAEIFLK-MGDLKSLVQLHVETQRWDEAFALAEKH--PEFKDDVY 807 (1081)
T ss_pred cccchHHHHHHH-hccHHHHhhheeecccchHhHhhhhhC--cccccccc
Confidence 999999999999 999999999999999999999999999 57877743
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-32 Score=297.54 Aligned_cols=321 Identities=13% Similarity=0.115 Sum_probs=244.8
Q ss_pred ccceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcE
Q 000736 20 DEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLL 99 (1323)
Q Consensus 20 ~~~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I 99 (1323)
++.+.+..|.+++..|.++|.|.....||+ .+..- ..+ .++| ...|.+|+|||||+.||+|+.||+|
T Consensus 115 ~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~--~TeTp---~~t----~KgH----~~WVlcvawsPDgk~iASG~~dg~I 181 (480)
T KOG0271|consen 115 GEAVLSVQFSPTGSRLVTGSGDTTVRLWDL--DTETP---LFT----CKGH----KNWVLCVAWSPDGKKIASGSKDGSI 181 (480)
T ss_pred CCcEEEEEecCCCceEEecCCCceEEeecc--CCCCc---cee----ecCC----ccEEEEEEECCCcchhhccccCCeE
Confidence 448999999999999999999999999999 34321 111 4555 3589999999999999999999999
Q ss_pred EEEeCCCCeEE--EeceecCcEEEEEE-----cCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccC
Q 000736 100 LLHSVDGNATE--VVGRVEGGVRFISP-----SPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSS 172 (1323)
Q Consensus 100 ~lw~~~~~~~e--~vg~~~~~I~~~aw-----SPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~ 172 (1323)
.+||..+++.. .+..|..+|++++| .|.+.+||+++.||+|+||+. ....++.... +|
T Consensus 182 ~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~----~~~~~~~~ls-----------gH 246 (480)
T KOG0271|consen 182 RLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDT----KLGTCVRTLS-----------GH 246 (480)
T ss_pred EEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEc----cCceEEEEec-----------cC
Confidence 99999876543 44457999999999 568899999999999988753 2323322222 67
Q ss_pred CCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEc-----------cCCCe-----
Q 000736 173 FSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM-----------PSGAN----- 236 (1323)
Q Consensus 173 ~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slaws-----------PdG~l----- 236 (1323)
+..|++|.|-|+| ++. ++| .||+||||+...|.+..++.+|..+|+.|+.| |.|+.
T Consensus 247 T~~VTCvrwGG~g-liy-SgS------~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~s 318 (480)
T KOG0271|consen 247 TASVTCVRWGGEG-LIY-SGS------QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFS 318 (480)
T ss_pred ccceEEEEEcCCc-eEE-ecC------CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChH
Confidence 7889999999999 566 564 46999999999999999999999999999877 44544
Q ss_pred --------------------EEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCC
Q 000736 237 --------------------IAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEY 296 (1323)
Q Consensus 237 --------------------IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~ 296 (1323)
++|+++| .++-+|+.+-...-.-.+ ..|..-|+.+.|||||.++|+++.|.
T Consensus 319 e~~~~Al~rY~~~~~~~~erlVSgsDd------~tlflW~p~~~kkpi~rm-tgHq~lVn~V~fSPd~r~IASaSFDk-- 389 (480)
T KOG0271|consen 319 EEQKKALERYEAVLKDSGERLVSGSDD------FTLFLWNPFKSKKPITRM-TGHQALVNHVSFSPDGRYIASASFDK-- 389 (480)
T ss_pred HHHHHHHHHHHHhhccCcceeEEecCC------ceEEEecccccccchhhh-hchhhheeeEEECCCccEEEEeeccc--
Confidence 9999986 569999865322110011 22356799999999999999999999
Q ss_pred CeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCC
Q 000736 297 DSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSL 376 (1323)
Q Consensus 297 ~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~ 376 (1323)
.|+||+..+++. + ..++.|-.....++|+.|..+ |+.++ .++++++|+++.
T Consensus 390 -SVkLW~g~tGk~-l-asfRGHv~~VYqvawsaDsRL-lVS~S-------------------------kDsTLKvw~V~t 440 (480)
T KOG0271|consen 390 -SVKLWDGRTGKF-L-ASFRGHVAAVYQVAWSADSRL-LVSGS-------------------------KDSTLKVWDVRT 440 (480)
T ss_pred -ceeeeeCCCcch-h-hhhhhccceeEEEEeccCccE-EEEcC-------------------------CCceEEEEEeee
Confidence 999999987652 2 234433333366788877643 33322 345677777765
Q ss_pred cCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEE
Q 000736 377 SLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1323)
Q Consensus 377 ~~vPppm~~~~l-~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~ 421 (1323)
.-+ .+.| .|.+.|.+|.||||| +.+|+++.|..++||.
T Consensus 441 kKl-----~~DLpGh~DEVf~vDwspDG--~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 441 KKL-----KQDLPGHADEVFAVDWSPDG--QRVASGGKDKVLRLWR 479 (480)
T ss_pred eee-----cccCCCCCceEEEEEecCCC--ceeecCCCceEEEeec
Confidence 432 1234 388999999999999 9999999999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-30 Score=286.67 Aligned_cols=311 Identities=15% Similarity=0.164 Sum_probs=233.4
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeE-EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeee
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~ 153 (1323)
++.|.+++|+|+|..||+|+.|.|+++||++|... -....|...|.|++|||||+.||+|+.||+|.+|+ |-++.
T Consensus 115 ~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd----pktg~ 190 (480)
T KOG0271|consen 115 GEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD----PKTGQ 190 (480)
T ss_pred CCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec----CCCCC
Confidence 57899999999999999999999999999998643 34445699999999999999999999999998864 43333
Q ss_pred eecccCCCceeccCccccCCCCeEEEEEe-----cCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEE
Q 000736 154 PLEELAEGFDVHEPELSSSFSFKSPISWR-----GDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVL 228 (1323)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~i~~isWs-----pDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~sl 228 (1323)
+... .|.+|...|++++|- |++++|| +++ .|+.|||||..-|.++.++.+|...|++|
T Consensus 191 ~~g~----------~l~gH~K~It~Lawep~hl~p~~r~la-s~s------kDg~vrIWd~~~~~~~~~lsgHT~~VTCv 253 (480)
T KOG0271|consen 191 QIGR----------ALRGHKKWITALAWEPLHLVPPCRRLA-SSS------KDGSVRIWDTKLGTCVRTLSGHTASVTCV 253 (480)
T ss_pred cccc----------cccCcccceeEEeecccccCCCcccee-ccc------CCCCEEEEEccCceEEEEeccCccceEEE
Confidence 2211 233667778999995 5888999 553 46899999998889999999999999999
Q ss_pred EEccCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEc-----------cCC------------
Q 000736 229 EWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWN-----------CMS------------ 284 (1323)
Q Consensus 229 awsPdG~lIAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWS-----------pDg------------ 284 (1323)
.|--+| +|+|++.|. +|++|+.+ |.... .+++| ..+|+.|+.| |-|
T Consensus 254 rwGG~g-liySgS~Dr------tIkvw~a~dG~~~r--~lkGH-ahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~ 323 (480)
T KOG0271|consen 254 RWGGEG-LIYSGSQDR------TIKVWRALDGKLCR--ELKGH-AHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKK 323 (480)
T ss_pred EEcCCc-eEEecCCCc------eEEEEEccchhHHH--hhccc-chheeeeeccchhhhhccccccccccCCChHHHHHH
Confidence 998777 799999864 69999854 32222 13333 4578888877 223
Q ss_pred -------------CeeEEEEccCCCCeEEEEEeeCCeeEEEeEE---EEecCCcEEEEEccCCCcEEEEEecCCcEEEEE
Q 000736 285 -------------DLLAAVVRFEEYDSVKICFFSNNHWYLKYEI---RYLRRDGIRFMWHPTKPLQLICWTLDGQITTYN 348 (1323)
Q Consensus 285 -------------~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l---~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~ 348 (1323)
+.|++++.|. ++-||+-...+ +.+ ..|+.....+.||||+.+ ++..+-|.
T Consensus 324 Al~rY~~~~~~~~erlVSgsDd~---tlflW~p~~~k----kpi~rmtgHq~lVn~V~fSPd~r~-IASaSFDk------ 389 (480)
T KOG0271|consen 324 ALERYEAVLKDSGERLVSGSDDF---TLFLWNPFKSK----KPITRMTGHQALVNHVSFSPDGRY-IASASFDK------ 389 (480)
T ss_pred HHHHHHHhhccCcceeEEecCCc---eEEEecccccc----cchhhhhchhhheeeEEECCCccE-EEEeeccc------
Confidence 4599999998 99999865432 222 244444478999999864 44443322
Q ss_pred EEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCCCCc
Q 000736 349 FIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDM 427 (1323)
Q Consensus 349 ~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l-~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~ 427 (1323)
-|++|+-+.+. ...++ .|-++|..|+||.|. .+|++++.|.|+++|++.+...
T Consensus 390 -------------------SVkLW~g~tGk-----~lasfRGHv~~VYqvawsaDs--RLlVS~SkDsTLKvw~V~tkKl 443 (480)
T KOG0271|consen 390 -------------------SVKLWDGRTGK-----FLASFRGHVAAVYQVAWSADS--RLLVSGSKDSTLKVWDVRTKKL 443 (480)
T ss_pred -------------------ceeeeeCCCcc-----hhhhhhhccceeEEEEeccCc--cEEEEcCCCceEEEEEeeeeee
Confidence 23333332211 11233 367889999999999 8999999999999999987655
Q ss_pred cccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecC
Q 000736 428 LEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHG 468 (1323)
Q Consensus 428 ~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~ 468 (1323)
...+.|+ .+.|..+-|+|||..+|++..+
T Consensus 444 ~~DLpGh------------~DEVf~vDwspDG~rV~sggkd 472 (480)
T KOG0271|consen 444 KQDLPGH------------ADEVFAVDWSPDGQRVASGGKD 472 (480)
T ss_pred cccCCCC------------CceEEEEEecCCCceeecCCCc
Confidence 5556654 4689999999999999876543
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.6e-29 Score=275.99 Aligned_cols=279 Identities=15% Similarity=0.125 Sum_probs=218.8
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe-EEEeceecCcEEEEEEcCC--CCeEEEEeCCccEEEEeecCceee
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-TEVVGRVEGGVRFISPSPD--GDLLGVTTGFGQILVMTHDWDLLY 151 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~-~e~vg~~~~~I~~~awSPD--G~~LA~~s~d~tV~l~t~~~d~~~ 151 (1323)
...|..+.||+|++.||+||-+|++++|+..+.. +..+-.|.+.|.++.|+|. +..||+++.||+|++|.-+ .
T Consensus 175 ~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~----~ 250 (459)
T KOG0272|consen 175 TRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS----Q 250 (459)
T ss_pred CCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC----C
Confidence 3578899999999999999999999999998753 3344446899999999998 6799999999999987543 3
Q ss_pred eeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEc
Q 000736 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM 231 (1323)
Q Consensus 152 e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slaws 231 (1323)
+.++... -+|...|..++|.|+|+||+ ++++ |.+-|+||.+++..+--.|+|+..|.+|+|.
T Consensus 251 e~~l~~l-----------~gH~~RVs~VafHPsG~~L~-Tasf------D~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~ 312 (459)
T KOG0272|consen 251 ETPLQDL-----------EGHLARVSRVAFHPSGKFLG-TASF------DSTWRLWDLETKSELLLQEGHSKGVFSIAFQ 312 (459)
T ss_pred Ccchhhh-----------hcchhhheeeeecCCCceee-eccc------ccchhhcccccchhhHhhcccccccceeEec
Confidence 3333332 26667889999999999999 6655 4799999999999888899999999999999
Q ss_pred cCCCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeE
Q 000736 232 PSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1323)
Q Consensus 232 PdG~lIAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wy 310 (1323)
|||.++|||+-|. .=++|| |.|.. ...|.+ |...|.+|+|||+|..||+++.|. ++++||+....-
T Consensus 313 ~DGSL~~tGGlD~------~~RvWDlRtgr~--im~L~g-H~k~I~~V~fsPNGy~lATgs~Dn---t~kVWDLR~r~~- 379 (459)
T KOG0272|consen 313 PDGSLAATGGLDS------LGRVWDLRTGRC--IMFLAG-HIKEILSVAFSPNGYHLATGSSDN---TCKVWDLRMRSE- 379 (459)
T ss_pred CCCceeeccCccc------hhheeecccCcE--EEEecc-cccceeeEeECCCceEEeecCCCC---cEEEeeeccccc-
Confidence 9999999999874 356799 44432 233444 356799999999999999999999 999999874321
Q ss_pred EEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeee-c
Q 000736 311 LKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-K 389 (1323)
Q Consensus 311 lkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l-~ 389 (1323)
...+..|.+-...|.|+|+.+.-|...+-| +++++|.-..|. +.++| .
T Consensus 380 -ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD-------------------------~t~kiWs~~~~~-----~~ksLaG 428 (459)
T KOG0272|consen 380 -LYTIPAHSNLVSQVKYSPQEGYFLVTASYD-------------------------NTVKIWSTRTWS-----PLKSLAG 428 (459)
T ss_pred -ceecccccchhhheEecccCCeEEEEcccC-------------------------cceeeecCCCcc-----cchhhcC
Confidence 245556555557799999666544443323 345555443332 23455 5
Q ss_pred CCCCEEEEEEecCCCCCEEEEEECCCcEEEEE
Q 000736 390 FPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1323)
Q Consensus 390 ~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~ 421 (1323)
|.+.|.+|..|||+ +.+++++.|.|++||.
T Consensus 429 He~kV~s~Dis~d~--~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 429 HEGKVISLDISPDS--QAIATSSFDRTIKLWR 458 (459)
T ss_pred CccceEEEEeccCC--ceEEEeccCceeeecc
Confidence 99999999999999 9999999999999996
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-24 Score=246.67 Aligned_cols=425 Identities=12% Similarity=0.089 Sum_probs=285.0
Q ss_pred ceeEEeeecCCCEEEEEeCCC----cEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCC-EEEEEeCC
Q 000736 22 ILQFSALDIEQNRLFFASSAN----NIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKE-ALIVGTSS 96 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~----~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~-~La~as~d 96 (1323)
++..++||.|+.+|..+.+-. ..+.||..+..++ +.+| ...|++++|-|.-. .++++++|
T Consensus 105 ~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGe-----------i~Gh----Sr~ins~~~KpsRPfRi~T~sdD 169 (603)
T KOG0318|consen 105 PIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGE-----------ITGH----SRRINSVDFKPSRPFRIATGSDD 169 (603)
T ss_pred ccccceeCCCCcEEEEEecCccceeEEEEecCCCccce-----------eecc----ceeEeeeeccCCCceEEEeccCC
Confidence 788999999999999987732 4789998423333 4455 45899999988654 68899999
Q ss_pred CcEEEEeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe-ecCceeeeeeecccCCCceeccCccccCCC
Q 000736 97 GLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1323)
Q Consensus 97 G~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~ 174 (1323)
++|.++.-.--+.. ..+.|..-|+|++|||||+.+|+++.||+|.+++ ++++.+.++.- .+ +|.+
T Consensus 170 n~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~--~~-----------aHkG 236 (603)
T KOG0318|consen 170 NTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELED--SD-----------AHKG 236 (603)
T ss_pred CeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecC--CC-----------Cccc
Confidence 99999975544444 5677888999999999999999999999999986 66666655432 22 6889
Q ss_pred CeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecc---CCCceeEEEEccCCCeEEEEecCCCCCCCCe
Q 000736 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL---KAFMGAVLEWMPSGANIAAVYDRKSENKCPS 251 (1323)
Q Consensus 175 ~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~---~~~~v~slawsPdG~lIAs~s~d~~~~~~~~ 251 (1323)
.|..++|+||++.|+|+| +|.++||||..++.+.+++.- .....-.+-|. .+ .|.+.+-. ..
T Consensus 237 sIfalsWsPDs~~~~T~S-------aDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq-kd-~lItVSl~------G~ 301 (603)
T KOG0318|consen 237 SIFALSWSPDSTQFLTVS-------ADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-KD-HLITVSLS------GT 301 (603)
T ss_pred cEEEEEECCCCceEEEec-------CCceEEEEEeeccceEEEeecCCchhceEEEEEEe-CC-eEEEEEcC------cE
Confidence 999999999999999554 368999999999999888542 22222345576 44 45555553 57
Q ss_pred EEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEE---------eEEEEec-CC
Q 000736 252 IVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLK---------YEIRYLR-RD 321 (1323)
Q Consensus 252 V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylk---------q~l~~~~-~~ 321 (1323)
|.+++++... -...+.+| ...|.+|+-|||++.|-+++.|+ .|.=|+.+..+--.. ..+.... ++
T Consensus 302 in~ln~~d~~-~~~~i~GH-nK~ITaLtv~~d~~~i~SgsyDG---~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~ 376 (603)
T KOG0318|consen 302 INYLNPSDPS-VLKVISGH-NKSITALTVSPDGKTIYSGSYDG---HINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE 376 (603)
T ss_pred EEEecccCCC-hhheeccc-ccceeEEEEcCCCCEEEeeccCc---eEEEEecCCccccccccccccceEEEEeecCCCc
Confidence 9999976433 12233343 56799999999999999999999 899999876543111 1111111 11
Q ss_pred cEEEEEccCCCcEEEEEec-CCcEEEEEEEEeee-------eC-C-CeeEEEEeCCEEEEeecCCcCCCCCceeeeecCC
Q 000736 322 GIRFMWHPTKPLQLICWTL-DGQITTYNFIWTTA-------VM-E-NSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFP 391 (1323)
Q Consensus 322 ~~~v~Wsp~~~~~L~~~~~-~g~~~~~~~~~~~~-------~~-d-~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~~~ 391 (1323)
...+.|+.. |.+... ++.+... .+.... .. + ...+++.+...+.+.++..-. ++...
T Consensus 377 ~~t~g~Dd~----l~~~~~~~~~~t~~-~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~--------~~~~~ 443 (603)
T KOG0318|consen 377 LFTIGWDDT----LRVISLKDNGYTKS-EVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVS--------SIPIG 443 (603)
T ss_pred EEEEecCCe----EEEEecccCccccc-ceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcce--------eeccc
Confidence 155566531 222221 1111111 111111 11 1 123333444444444444321 12222
Q ss_pred CCEEEEEEecCCCCCEEEEEECCCcEEEEECCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCC
Q 000736 392 TAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRH 471 (1323)
Q Consensus 392 ~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~ 471 (1323)
=.+.+||++|++ +.+|+++.||.|++|.+.+....++. . ...+...+..++||||+.+||++- .+.
T Consensus 444 y~~s~vAv~~~~--~~vaVGG~Dgkvhvysl~g~~l~ee~-----~-----~~~h~a~iT~vaySpd~~yla~~D--a~r 509 (603)
T KOG0318|consen 444 YESSAVAVSPDG--SEVAVGGQDGKVHVYSLSGDELKEEA-----K-----LLEHRAAITDVAYSPDGAYLAAGD--ASR 509 (603)
T ss_pred cccceEEEcCCC--CEEEEecccceEEEEEecCCccccee-----e-----eecccCCceEEEECCCCcEEEEec--cCC
Confidence 245789999999 99999999999999999864322110 0 013456899999999999999753 346
Q ss_pred eeEEEEeecccCccccchhhhhhhhcccccccccccccccceeeeeecccCCcEEEEeeCCCCCceEEEEeeCCeEEEEe
Q 000736 472 SNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYM 551 (1323)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~q~~dG~v~~~~ 551 (1323)
.+++|.+.-.. ..-+.-.-+.++|..++++| ++..++--+-|-.|+.|+
T Consensus 510 kvv~yd~~s~~------------------------------~~~~~w~FHtakI~~~aWsP-~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 510 KVVLYDVASRE------------------------------VKTNRWAFHTAKINCVAWSP-NNKLVATGSLDTNVIIYS 558 (603)
T ss_pred cEEEEEcccCc------------------------------eecceeeeeeeeEEEEEeCC-CceEEEeccccceEEEEE
Confidence 78888763100 00111122567899999999 888888889999999996
Q ss_pred c
Q 000736 552 S 552 (1323)
Q Consensus 552 ~ 552 (1323)
.
T Consensus 559 v 559 (603)
T KOG0318|consen 559 V 559 (603)
T ss_pred c
Confidence 4
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-26 Score=256.03 Aligned_cols=335 Identities=16% Similarity=0.188 Sum_probs=232.0
Q ss_pred ceeEEeeecCCCEEE-EEeCCCcEEEEecccccccccceeeccc----cccccccCCCCCCEEEEEEecCCCEEEEEeCC
Q 000736 22 ILQFSALDIEQNRLF-FASSANNIYSAQLSSFQNERASIKTAIS----AEIEHIDLEPGDSITAFDYLMEKEALIVGTSS 96 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~-~~s~~~~i~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~V~~v~~spdg~~La~as~d 96 (1323)
.+.+++|+|..+.+| +++.+..-..|++.+..... ..++. -...+........|++++|+-||..||+|+.|
T Consensus 180 ~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~---~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~ 256 (524)
T KOG0273|consen 180 EVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIG---STQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSED 256 (524)
T ss_pred ceEEEecCchhhhhhhccCCccceeeeeehhhcccc---chhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecC
Confidence 578899999999555 45668778889884211110 01000 00011111124679999999999999999999
Q ss_pred CcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEee-cCceeeeeeecccCCCceeccCccccCCCC
Q 000736 97 GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSF 175 (1323)
Q Consensus 97 G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~-~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1323)
|.+++|+.++..+..++.|.++|.++.|+-+|.+|++++-|+|+++|+. .+.......+ |...
T Consensus 257 G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~----------------~s~~ 320 (524)
T KOG0273|consen 257 GEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEF----------------HSAP 320 (524)
T ss_pred cEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeee----------------ccCC
Confidence 9999999999999999999999999999999999999999999999853 2222222222 2233
Q ss_pred eEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEE
Q 000736 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1323)
Q Consensus 176 i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~ 255 (1323)
-..|-|..+-. || +++. ++.|+|+-...-....++.+|.+.|.+|-|.|.|.+|||+++|. ++++|
T Consensus 321 ~lDVdW~~~~~-F~-ts~t------d~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~------TlkiW 386 (524)
T KOG0273|consen 321 ALDVDWQSNDE-FA-TSST------DGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDG------TLKIW 386 (524)
T ss_pred ccceEEecCce-Ee-ecCC------CceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCC------eeEee
Confidence 36799998886 56 4432 58999999966778889999999999999999999999999975 69999
Q ss_pred eCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcE
Q 000736 256 ERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQ 334 (1323)
Q Consensus 256 e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~ 334 (1323)
... +.... .+..+ ...|..+.|||+|.. .|+|.....
T Consensus 387 s~~~~~~~~--~l~~H-skei~t~~wsp~g~v---------------------------------------~~n~~~~~~ 424 (524)
T KOG0273|consen 387 SMGQSNSVH--DLQAH-SKEIYTIKWSPTGPV---------------------------------------TSNPNMNLM 424 (524)
T ss_pred ecCCCcchh--hhhhh-ccceeeEeecCCCCc---------------------------------------cCCCcCCce
Confidence 843 21111 12222 446888889887631 011111111
Q ss_pred EEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEEC
Q 000736 335 LICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILS 413 (1323)
Q Consensus 335 L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l-~~~~~V~~VaFSpdg~~~~LAs~s~ 413 (1323)
|... .-.++|++|+... +.+.+++ .|..+|.+|+|||+| .++|+++-
T Consensus 425 l~sa-------------------------s~dstV~lwdv~~-----gv~i~~f~kH~~pVysvafS~~g--~ylAsGs~ 472 (524)
T KOG0273|consen 425 LASA-------------------------SFDSTVKLWDVES-----GVPIHTLMKHQEPVYSVAFSPNG--RYLASGSL 472 (524)
T ss_pred EEEe-------------------------ecCCeEEEEEccC-----CceeEeeccCCCceEEEEecCCC--cEEEecCC
Confidence 1111 1122333443321 2223345 689999999999999 99999999
Q ss_pred CCcEEEEECCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCeeEEEEe
Q 000736 414 DGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1323)
Q Consensus 414 Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1323)
||.|++|+..+....+...| .+.|..++|+-+|..|+++..+ +.+++..+
T Consensus 473 dg~V~iws~~~~~l~~s~~~-------------~~~Ifel~Wn~~G~kl~~~~sd--~~vcvldl 522 (524)
T KOG0273|consen 473 DGCVHIWSTKTGKLVKSYQG-------------TGGIFELCWNAAGDKLGACASD--GSVCVLDL 522 (524)
T ss_pred CCeeEeccccchheeEeecC-------------CCeEEEEEEcCCCCEEEEEecC--CCceEEEe
Confidence 99999999987544433333 2468899999999887766544 45555443
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-27 Score=261.36 Aligned_cols=264 Identities=14% Similarity=0.099 Sum_probs=216.8
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecC--CCEEEEEeCCCcE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLME--KEALIVGTSSGLL 99 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spd--g~~La~as~dG~I 99 (1323)
++..+.+..|++.|.++|=++....|+. .+.+. +.+ +.+| .+.|.++.|+|. +..||+++.||+|
T Consensus 177 Pis~~~fS~ds~~laT~swsG~~kvW~~--~~~~~---~~~----l~gH----~~~v~~~~fhP~~~~~~lat~s~Dgtv 243 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSGLVKVWSV--PQCNL---LQT----LRGH----TSRVGAAVFHPVDSDLNLATASADGTV 243 (459)
T ss_pred cceeeEeecCCCeEEEeecCCceeEeec--CCcce---eEE----Eecc----ccceeeEEEccCCCccceeeeccCCce
Confidence 7888899999999999999999999998 45543 333 6677 468999999998 6799999999999
Q ss_pred EEEeCCCC-eEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEE
Q 000736 100 LLHSVDGN-ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1323)
Q Consensus 100 ~lw~~~~~-~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~ 178 (1323)
++|+.++. .+..+.+|...|..++|.|+|++|++++-|.+-.+ ||+-+...+.... ||+.+|.+
T Consensus 244 klw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRl----WD~~tk~ElL~QE-----------GHs~~v~~ 308 (459)
T KOG0272|consen 244 KLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRL----WDLETKSELLLQE-----------GHSKGVFS 308 (459)
T ss_pred eeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhh----cccccchhhHhhc-----------ccccccce
Confidence 99999884 34333345789999999999999999999998755 5665555554443 77888899
Q ss_pred EEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000736 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1323)
Q Consensus 179 isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~n 258 (1323)
|+|.|||..++ +++. |..-||||.++|.++-.+++|...|.+++|||+|..||+|+.| +++++|+..
T Consensus 309 iaf~~DGSL~~-tGGl------D~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~D------nt~kVWDLR 375 (459)
T KOG0272|consen 309 IAFQPDGSLAA-TGGL------DSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSD------NTCKVWDLR 375 (459)
T ss_pred eEecCCCceee-ccCc------cchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCC------CcEEEeeec
Confidence 99999999888 6654 4778999999999999999999999999999999999999986 469999965
Q ss_pred CeeEEEEEeccCCCCcEEEEEEcc-CCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCc
Q 000736 259 GLERSSFDINEQIDSTVELLKWNC-MSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPL 333 (1323)
Q Consensus 259 Gl~~~~f~l~~~~~~~V~~laWSp-Dg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~ 333 (1323)
+.+. -++++.| .+-|..|.|+| -|..|++++.|. +++||...+ |.+.+.+.+|.+...++.-+|++..
T Consensus 376 ~r~~-ly~ipAH-~nlVS~Vk~~p~~g~fL~TasyD~---t~kiWs~~~--~~~~ksLaGHe~kV~s~Dis~d~~~ 444 (459)
T KOG0272|consen 376 MRSE-LYTIPAH-SNLVSQVKYSPQEGYFLVTASYDN---TVKIWSTRT--WSPLKSLAGHEGKVISLDISPDSQA 444 (459)
T ss_pred cccc-ceecccc-cchhhheEecccCCeEEEEcccCc---ceeeecCCC--cccchhhcCCccceEEEEeccCCce
Confidence 4322 3456654 56799999999 789999999999 999999876 5566788887666677877877754
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-22 Score=233.63 Aligned_cols=380 Identities=12% Similarity=0.119 Sum_probs=246.4
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1323)
.+.+..+-|..--+..+-=++.+..|+. .++.. +.+++ +. .-.|.+..|.+-.+.+++|++|+.|++
T Consensus 15 RVKsVd~HPtePw~la~LynG~V~IWny--etqtm---Vksfe--V~------~~PvRa~kfiaRknWiv~GsDD~~IrV 81 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALYNGDVQIWNY--ETQTM---VKSFE--VS------EVPVRAAKFIARKNWIVTGSDDMQIRV 81 (794)
T ss_pred ceeeeecCCCCceEEEeeecCeeEEEec--cccee---eeeee--ec------ccchhhheeeeccceEEEecCCceEEE
Confidence 4444444443333443333566888998 45443 22111 11 235888999999999999999999999
Q ss_pred EeCCCC-eEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEE
Q 000736 102 HSVDGN-ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1323)
Q Consensus 102 w~~~~~-~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~is 180 (1323)
+|.+|. ++..+..|++.|+|++-.|..-++.++|.|-+|++|+.+.....++ .|.||...|.+|+
T Consensus 82 fnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~q--------------tfeGH~HyVMqv~ 147 (794)
T KOG0276|consen 82 FNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQ--------------TFEGHEHYVMQVA 147 (794)
T ss_pred EecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeee--------------EEcCcceEEEEEE
Confidence 999984 5678888999999999999999999999999999997433322222 2447778899999
Q ss_pred Eec-CCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCC--eEEEEecCCCCCCCCeEEEEeC
Q 000736 181 WRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA--NIAAVYDRKSENKCPSIVFYER 257 (1323)
Q Consensus 181 Wsp-DG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~--lIAs~s~d~~~~~~~~V~~~e~ 257 (1323)
|.| |...|| +++. |++||||+......-.|+++|...|++|.+=|-|. +|.||++| .+|++||-
T Consensus 148 fnPkD~ntFa-S~sL------DrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD------~tiKvWDy 214 (794)
T KOG0276|consen 148 FNPKDPNTFA-SASL------DRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADD------LTIKVWDY 214 (794)
T ss_pred ecCCCcccee-eeec------cccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCC------ceEEEeec
Confidence 999 567999 6665 59999999977778889999999999999988774 78888886 67999995
Q ss_pred CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEE
Q 000736 258 NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLIC 337 (1323)
Q Consensus 258 nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~ 337 (1323)
....- .-+|.+ |...|..+.|.|.=.++++|+.|+ ||+||+.++|. +-.++.+.-...++++=.+.+.. +.+
T Consensus 215 Qtk~C-V~TLeG-Ht~Nvs~v~fhp~lpiiisgsEDG---TvriWhs~Ty~--lE~tLn~gleRvW~I~~~k~~~~-i~v 286 (794)
T KOG0276|consen 215 QTKSC-VQTLEG-HTNNVSFVFFHPELPIIISGSEDG---TVRIWNSKTYK--LEKTLNYGLERVWCIAAHKGDGK-IAV 286 (794)
T ss_pred chHHH-HHHhhc-ccccceEEEecCCCcEEEEecCCc---cEEEecCccee--hhhhhhcCCceEEEEeecCCCCe-EEE
Confidence 32110 012333 356799999999999999999999 99999999875 23344442222245554444443 666
Q ss_pred EecCCcEEE--------------EEEEEeeeeCCCeeEEEEeCCEEEEe-ecCCcCCCCCceeeeecC-CCCEEEEEEec
Q 000736 338 WTLDGQITT--------------YNFIWTTAVMENSTALVIDGSKILVT-PLSLSLMPPPMYLFSLKF-PTAVTEMAFYS 401 (1323)
Q Consensus 338 ~~~~g~~~~--------------~~~~~~~~~~d~~~v~viDg~~l~lt-~l~~~~vPppm~~~~l~~-~~~V~~VaFSp 401 (1323)
+...|.+.+ ...+|+.. +-+..++++.+.-- .+. ...+-|++.+.+.- .-....++-||
T Consensus 287 G~Deg~i~v~lgreeP~vsMd~~gKIiwa~~----~ei~~~~~ks~~~~~ev~-DgErL~LsvKeLgs~eiyPq~L~hsP 361 (794)
T KOG0276|consen 287 GFDEGSVTVKLGREEPAVSMDSNGKIIWAVH----SEIQAVNLKSVGAQKEVT-DGERLPLSVKELGSVEIYPQTLAHSP 361 (794)
T ss_pred eccCCcEEEEccCCCCceeecCCccEEEEcC----ceeeeeeceeccCccccc-CCccccchhhhccccccchHHhccCC
Confidence 665555432 11234332 01111111111000 000 01122344344321 11234677789
Q ss_pred CCCCCEEEEEECCCcEEEEECCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCeeEEE
Q 000736 402 KSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFR 476 (1323)
Q Consensus 402 dg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~ 476 (1323)
+| ++++...||.-.||..-. +.- ...+.-..+.|++|..-.|+-- +++.++++
T Consensus 362 NG---rfV~VcgdGEyiIyTala------~Rn-----------K~fG~~~eFvw~~dsne~avRe--s~~~vki~ 414 (794)
T KOG0276|consen 362 NG---RFVVVCGDGEYIIYTALA------LRN-----------KAFGSGLEFVWAADSNEFAVRE--SNGNVKIF 414 (794)
T ss_pred CC---cEEEEecCccEEEEEeee------hhh-----------cccccceeEEEcCCCCeEEEEe--cCCceEEE
Confidence 98 666777899999987432 110 1234567789999954455432 22456665
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-22 Score=239.27 Aligned_cols=448 Identities=14% Similarity=0.131 Sum_probs=319.3
Q ss_pred EEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeC
Q 000736 25 FSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSV 104 (1323)
Q Consensus 25 ~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~ 104 (1323)
.++|++||..|++-..+. +..+|+ ..++. -|+| +.....|..|+.||||..|++.-+.|...+.+.
T Consensus 19 nl~ft~dG~sviSPvGNr-vsv~dL--knN~S----~Tl~-------~e~~~NI~~ialSp~g~lllavdE~g~~~lvs~ 84 (893)
T KOG0291|consen 19 NLVFTKDGNSVISPVGNR-VSVFDL--KNNKS----YTLP-------LETRYNITRIALSPDGTLLLAVDERGRALLVSL 84 (893)
T ss_pred cEEECCCCCEEEeccCCE-EEEEEc--cCCcc----eeEE-------eecCCceEEEEeCCCceEEEEEcCCCcEEEEec
Confidence 478899999999877766 888888 33332 2222 333568999999999999999999999999987
Q ss_pred CCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecC
Q 000736 105 DGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD 184 (1323)
Q Consensus 105 ~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspD 184 (1323)
....+--.-+...+|-|+.|||||+.+|++.+. -+.+|-. ...+.+ .+.+. +-...+.+|.+.+.+|.|+-|
T Consensus 85 ~~r~Vlh~f~fk~~v~~i~fSPng~~fav~~gn-~lqiw~~-P~~~~~-~~~pF-----vl~r~~~g~fddi~si~Ws~D 156 (893)
T KOG0291|consen 85 LSRSVLHRFNFKRGVGAIKFSPNGKFFAVGCGN-LLQIWHA-PGEIKN-EFNPF-----VLHRTYLGHFDDITSIDWSDD 156 (893)
T ss_pred ccceeeEEEeecCccceEEECCCCcEEEEEecc-eeEEEec-Ccchhc-ccCcc-----eEeeeecCCccceeEEEeccC
Confidence 653322111357899999999999999998875 6777732 122221 11111 112234488899999999999
Q ss_pred CcEEEEeeccccccCCCCEEEEEECCCCc--eeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCC----
Q 000736 185 GKYFATLSEFCNSSKLHKRLKVWERDSGT--LQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN---- 258 (1323)
Q Consensus 185 G~~lAtvss~d~~~~~d~~IrVWd~~~G~--l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~n---- 258 (1323)
.++|+ +++ .|.++|||+.+.-+ ....+.+|...|-+.-|..+..-|.+.+.|+ .+-+|+-+
T Consensus 157 Sr~l~-~gs------rD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG------~l~~W~~~~~P~ 223 (893)
T KOG0291|consen 157 SRLLV-TGS------RDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDG------ALFVWTCDLRPP 223 (893)
T ss_pred CceEE-ecc------ccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCc------eEEEEEecCCCc
Confidence 99999 664 46899999984322 2455778999998889999999999998863 56677644
Q ss_pred --------------------Cee--EEEE--Eec----cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeE
Q 000736 259 --------------------GLE--RSSF--DIN----EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1323)
Q Consensus 259 --------------------Gl~--~~~f--~l~----~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wy 310 (1323)
|.. |.-+ .+. ......|.+.+|++-..+||++-..+ ...|+.+... .
T Consensus 224 ~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG---~f~LyelP~f--~ 298 (893)
T KOG0291|consen 224 ELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSG---EFGLYELPDF--N 298 (893)
T ss_pred ccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCC---eeEEEecCCc--e
Confidence 211 1101 111 11236799999999999999999988 7788888764 3
Q ss_pred EEeEEEEecCCcEEEEEccCCCcEEEEEec-CCcEEEEEEEEee---------------e--eCCCeeEEEEeCCEEEEe
Q 000736 311 LKYEIRYLRRDGIRFMWHPTKPLQLICWTL-DGQITTYNFIWTT---------------A--VMENSTALVIDGSKILVT 372 (1323)
Q Consensus 311 lkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~-~g~~~~~~~~~~~---------------~--~~d~~~v~viDg~~l~lt 372 (1323)
+.+.+..++.....+.|+..|.. |++++. -|++.+|+|.-.. + |++.-+++..|+++|++|
T Consensus 299 lih~LSis~~~I~t~~~N~tGDW-iA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvW 377 (893)
T KOG0291|consen 299 LIHSLSISDQKILTVSFNSTGDW-IAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVW 377 (893)
T ss_pred EEEEeecccceeeEEEecccCCE-EEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEE
Confidence 55666665444478899988876 677664 3677776664211 1 555566777888899999
Q ss_pred ecCCcCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCCCCccccccCCceeE------ee-----
Q 000736 373 PLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVV------EA----- 440 (1323)
Q Consensus 373 ~l~~~~vPppm~~~~l-~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~------~~----- 440 (1323)
+... ..|..++ +|.+.|..|.|+..| +.+.+.+-||+|+.||+..-.+..++..+...- .+
T Consensus 378 n~~S-----gfC~vTFteHts~Vt~v~f~~~g--~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV 450 (893)
T KOG0291|consen 378 NTQS-----GFCFVTFTEHTSGVTAVQFTARG--NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELV 450 (893)
T ss_pred eccC-----ceEEEEeccCCCceEEEEEEecC--CEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEE
Confidence 8643 4788888 599999999999999 999999999999999986532222222111100 00
Q ss_pred ---------------------eccccccCcEEEEEEecCCeEEEEEecCCCCeeEEEEeecccCccccchhhhhhhhccc
Q 000736 441 ---------------------CISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSE 499 (1323)
Q Consensus 441 ---------------------~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 499 (1323)
..+.+|-+.|..++|+|++..||+++.+ .++.+|++- +.
T Consensus 451 ~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD--kTVRiW~if-~s----------------- 510 (893)
T KOG0291|consen 451 CAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD--KTVRIWDIF-SS----------------- 510 (893)
T ss_pred EeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecccc--ceEEEEEee-cc-----------------
Confidence 0113455689999999999999999988 789999862 00
Q ss_pred ccccccccccccceeeeeecccCCcEEEEeeCCCCCceEEEEeeCCeEEEEeccc
Q 000736 500 DHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRV 554 (1323)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~q~~dG~v~~~~~~~ 554 (1323)
.+ .....++...|..++++| +++.+++.+.||.+-.|+...
T Consensus 511 ---------~~----~vEtl~i~sdvl~vsfrP-dG~elaVaTldgqItf~d~~~ 551 (893)
T KOG0291|consen 511 ---------SG----TVETLEIRSDVLAVSFRP-DGKELAVATLDGQITFFDIKE 551 (893)
T ss_pred ---------Cc----eeeeEeeccceeEEEEcC-CCCeEEEEEecceEEEEEhhh
Confidence 01 122455677899999999 999999999999999997643
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-22 Score=231.28 Aligned_cols=360 Identities=13% Similarity=0.133 Sum_probs=249.9
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1323)
...-+..|+-+|.+..+...+ ++.-++ .+... ..+ ..+| ...++-..|||.|.++|+|-..|+|+|
T Consensus 20 ~~~~ig~dpkgd~ilY~nGks-v~ir~i--~~~~~-~~i------YtEH----~~~vtVAkySPsG~yiASGD~sG~vRI 85 (603)
T KOG0318|consen 20 VPIIIGGDPKGDNILYTNGKS-VIIRNI--DNPAS-VDI------YTEH----AHQVTVAKYSPSGFYIASGDVSGKVRI 85 (603)
T ss_pred cceEeccCCCCCeEEEeCCCE-EEEEEC--CCccc-eee------eccc----cceeEEEEeCCCceEEeecCCcCcEEE
Confidence 566788899998888777766 555555 22221 111 3444 347888999999999999999999999
Q ss_pred EeCCCC--eEE-EeceecCcEEEEEEcCCCCeEEEEeCC----ccEEEEeecCceeeeeeecccCCCceeccCccccCCC
Q 000736 102 HSVDGN--ATE-VVGRVEGGVRFISPSPDGDLLGVTTGF----GQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1323)
Q Consensus 102 w~~~~~--~~e-~vg~~~~~I~~~awSPDG~~LA~~s~d----~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~ 174 (1323)
|+.... .++ .+.-+.+.|..++|++||+.||.+++- |.+.+|+. +..+-++ .+|..
T Consensus 86 Wdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DS-G~SvGei----------------~GhSr 148 (603)
T KOG0318|consen 86 WDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDS-GNSVGEI----------------TGHSR 148 (603)
T ss_pred EeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecC-CCcccee----------------eccce
Confidence 997652 222 344457889999999999999987642 23444422 2222222 25666
Q ss_pred CeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEE
Q 000736 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1323)
Q Consensus 175 ~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~ 254 (1323)
.+.++.|.|---|=+.++ +.|++|-+|+---=+...++..|...|+++.|||||+++|+++.|+ +|.+
T Consensus 149 ~ins~~~KpsRPfRi~T~------sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDg------ki~i 216 (603)
T KOG0318|consen 149 RINSVDFKPSRPFRIATG------SDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDG------KIYI 216 (603)
T ss_pred eEeeeeccCCCceEEEec------cCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCc------cEEE
Confidence 789999999887654133 3479999997544466667778889999999999999999999874 6889
Q ss_pred Ee-CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecC--Cc-EEEEEccC
Q 000736 255 YE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRR--DG-IRFMWHPT 330 (1323)
Q Consensus 255 ~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~--~~-~~v~Wsp~ 330 (1323)
|| +.|...+++.-...+.+.|++|+|||||+.+++++.|. ++||||++... +.+++.+... +. +.+.|-.+
T Consensus 217 yDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk---t~KIWdVs~~s--lv~t~~~~~~v~dqqvG~lWqkd 291 (603)
T KOG0318|consen 217 YDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADK---TIKIWDVSTNS--LVSTWPMGSTVEDQQVGCLWQKD 291 (603)
T ss_pred EcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCc---eEEEEEeeccc--eEEEeecCCchhceEEEEEEeCC
Confidence 98 67777776643334568899999999999999999999 99999998763 4556665432 33 55666622
Q ss_pred CCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeee-cCCCCEEEEEEecCCCCCEEE
Q 000736 331 KPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLA 409 (1323)
Q Consensus 331 ~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l-~~~~~V~~VaFSpdg~~~~LA 409 (1323)
.|...+.+|.+..++ +++ + . | .+.+ .|..+|++++.+||+ +.|-
T Consensus 292 ---~lItVSl~G~in~ln------~~d--------~-----------~---~--~~~i~GHnK~ITaLtv~~d~--~~i~ 336 (603)
T KOG0318|consen 292 ---HLITVSLSGTINYLN------PSD--------P-----------S---V--LKVISGHNKSITALTVSPDG--KTIY 336 (603)
T ss_pred ---eEEEEEcCcEEEEec------ccC--------C-----------C---h--hheecccccceeEEEEcCCC--CEEE
Confidence 244445555443211 111 1 1 1 1233 588899999999999 9999
Q ss_pred EEECCCcEEEEECCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCeeEEEEe
Q 000736 410 AILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1323)
Q Consensus 410 s~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1323)
+++.||.|.-|+......- .+.| +.|.+.|..++-...+.++-++.+ +++....+
T Consensus 337 SgsyDG~I~~W~~~~g~~~-~~~g----------~~h~nqI~~~~~~~~~~~~t~g~D---d~l~~~~~ 391 (603)
T KOG0318|consen 337 SGSYDGHINSWDSGSGTSD-RLAG----------KGHTNQIKGMAASESGELFTIGWD---DTLRVISL 391 (603)
T ss_pred eeccCceEEEEecCCcccc-cccc----------ccccceEEEEeecCCCcEEEEecC---CeEEEEec
Confidence 9999999999998753221 1222 234556777777776666666655 45555544
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-25 Score=234.90 Aligned_cols=280 Identities=16% Similarity=0.207 Sum_probs=207.2
Q ss_pred eceecCcEEEEEEcCC-CCeEEEEeCCccEEEEeec-CceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEE
Q 000736 112 VGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFA 189 (1323)
Q Consensus 112 vg~~~~~I~~~awSPD-G~~LA~~s~d~tV~l~t~~-~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lA 189 (1323)
+..|.+.|+.++|+|- |.+||++++|+.|++|+.. .+.......-. + +|.-.|.+|+|||.|+|||
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld-~-----------~hkrsVRsvAwsp~g~~La 77 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLD-D-----------GHKRSVRSVAWSPHGRYLA 77 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEecc-c-----------cchheeeeeeecCCCcEEE
Confidence 3446788999999999 9999999999999999754 33322222111 1 3556779999999999999
Q ss_pred EeeccccccCCCCEEEEEECCCC--ceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEe
Q 000736 190 TLSEFCNSSKLHKRLKVWERDSG--TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDI 267 (1323)
Q Consensus 190 tvss~d~~~~~d~~IrVWd~~~G--~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l 267 (1323)
++|+| .++-||.-..| ++..++|+|..-|.+++||++|++||++++|+ .|-+||..+ ..+|..
T Consensus 78 -~aSFD------~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDK------SVWiWe~de--ddEfec 142 (312)
T KOG0645|consen 78 -SASFD------ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDK------SVWIWEIDE--DDEFEC 142 (312)
T ss_pred -Eeecc------ceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCC------eEEEEEecC--CCcEEE
Confidence 77764 79999987655 56788999999999999999999999999975 599999763 234432
Q ss_pred c---cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee-CCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCc
Q 000736 268 N---EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS-NNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQ 343 (1323)
Q Consensus 268 ~---~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~-n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~ 343 (1323)
- .+|...|..+.|.|.-.+|+++++|. +|++|... ...|-+.|.|..+.....++.|+|.|. +|...+.|+.
T Consensus 143 ~aVL~~HtqDVK~V~WHPt~dlL~S~SYDn---TIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~-rl~s~sdD~t 218 (312)
T KOG0645|consen 143 IAVLQEHTQDVKHVIWHPTEDLLFSCSYDN---TIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS-RLVSCSDDGT 218 (312)
T ss_pred EeeeccccccccEEEEcCCcceeEEeccCC---eEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc-eEEEecCCcc
Confidence 2 34466799999999999999999999 99999988 788999999988765558999999885 5888888888
Q ss_pred EEEEEEE-----------EeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCcee---eeecCCCCEEEEEEecCCCCCEEE
Q 000736 344 ITTYNFI-----------WTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYL---FSLKFPTAVTEMAFYSKSSKNCLA 409 (1323)
Q Consensus 344 ~~~~~~~-----------~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~---~~l~~~~~V~~VaFSpdg~~~~LA 409 (1323)
+.++... +++...+..++.+..+..+.+..-...+..|-... ....|...|++|.|.|.+ +++|+
T Consensus 219 v~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~-~~~L~ 297 (312)
T KOG0645|consen 219 VSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKV-SNRLA 297 (312)
T ss_pred eEeeeeccCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCC-CCcee
Confidence 7654421 11222222233333444555554333323232111 122377789999999953 28999
Q ss_pred EEECCCcEEEEECC
Q 000736 410 AILSDGCLCVVDLP 423 (1323)
Q Consensus 410 s~s~Dgti~lw~~~ 423 (1323)
+++.||.|++|.+.
T Consensus 298 s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 298 SGGDDGIVNFWELE 311 (312)
T ss_pred ecCCCceEEEEEec
Confidence 99999999999874
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-23 Score=246.02 Aligned_cols=419 Identities=14% Similarity=0.088 Sum_probs=277.3
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1323)
.+.++.|.|+|..+.++.++- +-.|..+..-++ +..-=.+.....+ +-+.|++|.||.|++.|++|+.|-+++|
T Consensus 98 ~v~~i~fSPng~~fav~~gn~-lqiw~~P~~~~~-~~~pFvl~r~~~g----~fddi~si~Ws~DSr~l~~gsrD~s~rl 171 (893)
T KOG0291|consen 98 GVGAIKFSPNGKFFAVGCGNL-LQIWHAPGEIKN-EFNPFVLHRTYLG----HFDDITSIDWSDDSRLLVTGSRDLSARL 171 (893)
T ss_pred ccceEEECCCCcEEEEEecce-eEEEecCcchhc-ccCcceEeeeecC----CccceeEEEeccCCceEEeccccceEEE
Confidence 788899999888777776654 667877421111 0110000011112 2478999999999999999999999999
Q ss_pred EeCCCCe---EEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeee-----------cccC--C-----
Q 000736 102 HSVDGNA---TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPL-----------EELA--E----- 160 (1323)
Q Consensus 102 w~~~~~~---~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l-----------~~~~--~----- 160 (1323)
|.++..+ ......|.+.|.+.-|+.|...|.+++.||.+.+|+-+-.|...... ...+ +
T Consensus 172 ~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~ 251 (893)
T KOG0291|consen 172 FGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKI 251 (893)
T ss_pred EEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcce
Confidence 9987622 34556679999999999999999999999999999755212110000 0000 0
Q ss_pred -------------CceeccCccc------------------------------cCCCCeEEEEEecCCcEEEEeeccccc
Q 000736 161 -------------GFDVHEPELS------------------------------SSFSFKSPISWRGDGKYFATLSEFCNS 197 (1323)
Q Consensus 161 -------------~~~Vs~tqf~------------------------------~~~~~i~~isWspDG~~lAtvss~d~~ 197 (1323)
+..|+...|| -.+..|..++|+--|.++| .++
T Consensus 252 ~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA-~g~---- 326 (893)
T KOG0291|consen 252 FWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIA-FGC---- 326 (893)
T ss_pred EEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEE-EcC----
Confidence 0111112222 1235788999999999999 775
Q ss_pred cCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec--cCCCCcE
Q 000736 198 SKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN--EQIDSTV 275 (1323)
Q Consensus 198 ~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~--~~~~~~V 275 (1323)
..-+.+-||+-.+-.-+-..++|-..+.++++||||++||+|++| ..|++|+.+. .|++. ..++..|
T Consensus 327 -~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eD------gKVKvWn~~S----gfC~vTFteHts~V 395 (893)
T KOG0291|consen 327 -SKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAED------GKVKVWNTQS----GFCFVTFTEHTSGV 395 (893)
T ss_pred -CccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCC------CcEEEEeccC----ceEEEEeccCCCce
Confidence 235799999985555555566788889999999999999999986 5799999541 12222 3457789
Q ss_pred EEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCc-EEEEEccCCCcEEEEEecCCcEEEEEEEEeee
Q 000736 276 ELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTA 354 (1323)
Q Consensus 276 ~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~ 354 (1323)
..+.|+.+|+.|.+.+-|| +|+.||+.+|.-|... ..+..-+ .+++=+|.|.. +..+++| .+. -++|++.
T Consensus 396 t~v~f~~~g~~llssSLDG---tVRAwDlkRYrNfRTf--t~P~p~QfscvavD~sGel-V~AG~~d-~F~--IfvWS~q 466 (893)
T KOG0291|consen 396 TAVQFTARGNVLLSSSLDG---TVRAWDLKRYRNFRTF--TSPEPIQFSCVAVDPSGEL-VCAGAQD-SFE--IFVWSVQ 466 (893)
T ss_pred EEEEEEecCCEEEEeecCC---eEEeeeecccceeeee--cCCCceeeeEEEEcCCCCE-EEeeccc-eEE--EEEEEee
Confidence 9999999999999999999 9999999998876533 2222222 45555665543 2222222 121 1344433
Q ss_pred ---------------------eCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEEC
Q 000736 355 ---------------------VMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILS 413 (1323)
Q Consensus 355 ---------------------~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~ 413 (1323)
+++..++...=+++|++|++-... -...++++.+-|.+|+|+||| ..||+++-
T Consensus 467 TGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~----~~vEtl~i~sdvl~vsfrPdG--~elaVaTl 540 (893)
T KOG0291|consen 467 TGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS----GTVETLEIRSDVLAVSFRPDG--KELAVATL 540 (893)
T ss_pred cCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC----ceeeeEeeccceeEEEEcCCC--CeEEEEEe
Confidence 223333433345789999864321 112356778889999999999 99999999
Q ss_pred CCcEEEEECCCCCccccccCC------ceeEeeeccc--cccCcEEEEEEecCCeEEEEEecCCCCeeEEEEee
Q 000736 414 DGCLCVVDLPAPDMLEDLEGT------EFVVEACISE--TAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGAT 479 (1323)
Q Consensus 414 Dgti~lw~~~~~~~~~~~~g~------~~~~~~~~~~--~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~ 479 (1323)
||.|.+|+...........|. ......-..+ .....+..+++++||..+.++ +.++.+|+|.+.
T Consensus 541 dgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAg--G~sn~iCiY~v~ 612 (893)
T KOG0291|consen 541 DGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAG--GESNSICIYDVP 612 (893)
T ss_pred cceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEec--CCcccEEEEECc
Confidence 999999998653322222221 1100000001 112378999999999987655 455889999864
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-23 Score=246.34 Aligned_cols=433 Identities=15% Similarity=0.117 Sum_probs=306.3
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1323)
.++..+.|...+....++...++..||+ .+++.+..+..+.. ...|+++.=+||.-.||+|.+||.|+|
T Consensus 23 N~~~~~~~~~~Gr~va~~a~E~vn~Wdl--Rtge~~~~l~~~~~---------k~evt~l~~~~d~l~lAVGYaDGsVqi 91 (888)
T KOG0306|consen 23 NINFVVKRSGKGRAVAVSALEQVNIWDL--RTGEIEKKLILLKK---------KAEVTCLRSSDDILLLAVGYADGSVQI 91 (888)
T ss_pred ceeEEEeecCCCcEEEEeccccEeEEee--ecchhhhhhhhhcc---------cceEEEeeccCCcceEEEEecCceEEe
Confidence 6777888866555555555555999999 67754333321111 136888888999999999999999999
Q ss_pred EeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEE
Q 000736 102 HSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1323)
Q Consensus 102 w~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~is 180 (1323)
|+..++.+. .+..|...|+++.|+-+|..||+||.|+.|++| |.+.|.-+-. .+||.+.++..-
T Consensus 92 f~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvw----DlV~E~Gl~r-----------L~GHkd~iT~~~ 156 (888)
T KOG0306|consen 92 FSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVW----DLVGEEGLFR-----------LRGHKDSITQAL 156 (888)
T ss_pred eccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEE----EeccceeeEE-----------eecchHHHhHHh
Confidence 999865443 344469999999999999999999999999986 5555443322 226777788888
Q ss_pred EecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeC---
Q 000736 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER--- 257 (1323)
Q Consensus 181 WspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~--- 257 (1323)
|..+..++++++ .|..||+||.++-.+..|--.|.+.++++++.+ +++.++..+. .+.+|+.
T Consensus 157 F~~~~~~lvS~s-------KDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~ds------e~~v~~L~~~ 221 (888)
T KOG0306|consen 157 FLNGDSFLVSVS-------KDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDS------ELKVWELAFE 221 (888)
T ss_pred ccCCCeEEEEec-------cCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCC------ceEEEEeecc
Confidence 888777777443 368999999988888888777778788888777 2222222110 1111111
Q ss_pred --------------------------------------------------------------------------------
Q 000736 258 -------------------------------------------------------------------------------- 257 (1323)
Q Consensus 258 -------------------------------------------------------------------------------- 257 (1323)
T Consensus 222 ~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~ 301 (888)
T KOG0306|consen 222 DDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENED 301 (888)
T ss_pred cccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcccccccc
Confidence
Q ss_pred -----------------------------CCeeEE-----------EEEec-----------------cCCCCcEEEEEE
Q 000736 258 -----------------------------NGLERS-----------SFDIN-----------------EQIDSTVELLKW 280 (1323)
Q Consensus 258 -----------------------------nGl~~~-----------~f~l~-----------------~~~~~~V~~laW 280 (1323)
.+.... -+.++ ..|...|.++++
T Consensus 302 ~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~v 381 (888)
T KOG0306|consen 302 DVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCV 381 (888)
T ss_pred chhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEe
Confidence 000000 00010 012346889999
Q ss_pred ccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEE-----------
Q 000736 281 NCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNF----------- 349 (1323)
Q Consensus 281 SpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~----------- 349 (1323)
|.|+.++++++.+. +++|+..+.+... .+.........|-|.+. .+.+++.+|.+..++.
T Consensus 382 S~d~~~~~Sga~~S----ikiWn~~t~kciR----Ti~~~y~l~~~Fvpgd~-~Iv~G~k~Gel~vfdlaS~~l~Eti~A 452 (888)
T KOG0306|consen 382 SSDSILLASGAGES----IKIWNRDTLKCIR----TITCGYILASKFVPGDR-YIVLGTKNGELQVFDLASASLVETIRA 452 (888)
T ss_pred ecCceeeeecCCCc----EEEEEccCcceeE----EeccccEEEEEecCCCc-eEEEeccCCceEEEEeehhhhhhhhhc
Confidence 99999999987765 9999998754322 22223336677888554 4888888898766543
Q ss_pred ----EEeee--eCCCeeEEEEeCCEEEEeecCCcC-CCCCce-------eeeecCCCCEEEEEEecCCCCCEEEEEECCC
Q 000736 350 ----IWTTA--VMENSTALVIDGSKILVTPLSLSL-MPPPMY-------LFSLKFPTAVTEMAFYSKSSKNCLAAILSDG 415 (1323)
Q Consensus 350 ----~~~~~--~~d~~~v~viDg~~l~lt~l~~~~-vPppm~-------~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dg 415 (1323)
+|+++ |++.+.+.+..+++|++|+|.... +|-..- .++|++++.|.+|++|||| ..||++.-|+
T Consensus 453 HdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg--k~LaVsLLdn 530 (888)
T KOG0306|consen 453 HDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG--KLLAVSLLDN 530 (888)
T ss_pred cccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC--cEEEEEeccC
Confidence 48877 788899999999999999997543 332221 1467789999999999999 9999999999
Q ss_pred cEEEEECCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCeeEEEEeecccCccccchhhhhhh
Q 000736 416 CLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIEL 495 (1323)
Q Consensus 416 ti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 495 (1323)
||++|-+++-.-.-.+.||. -.|.++--+||+.++++++.+ .++++|-+++.+
T Consensus 531 TVkVyflDtlKFflsLYGHk------------LPV~smDIS~DSklivTgSAD--KnVKiWGLdFGD------------- 583 (888)
T KOG0306|consen 531 TVKVYFLDTLKFFLSLYGHK------------LPVLSMDISPDSKLIVTGSAD--KNVKIWGLDFGD------------- 583 (888)
T ss_pred eEEEEEecceeeeeeecccc------------cceeEEeccCCcCeEEeccCC--CceEEeccccch-------------
Confidence 99999998743333345543 357888889999999999887 678999886632
Q ss_pred hcccccccccccccccceeeeeecccCCcEEEEeeCCCCCceEEEEeeCCeEEEEec
Q 000736 496 ACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMS 552 (1323)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~q~~dG~v~~~~~ 552 (1323)
| + .+...++..|..|.+-| +..-+|....||+|-.|+.
T Consensus 584 -C---H--------------KS~fAHdDSvm~V~F~P-~~~~FFt~gKD~kvKqWDg 621 (888)
T KOG0306|consen 584 -C---H--------------KSFFAHDDSVMSVQFLP-KTHLFFTCGKDGKVKQWDG 621 (888)
T ss_pred -h---h--------------hhhhcccCceeEEEEcc-cceeEEEecCcceEEeech
Confidence 2 1 22455677889998888 6666777899999999965
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-24 Score=229.50 Aligned_cols=280 Identities=15% Similarity=0.093 Sum_probs=212.9
Q ss_pred ceeEEeeecC-CCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEE
Q 000736 22 ILQFSALDIE-QNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1323)
Q Consensus 22 ~~~~~~~d~~-~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~ 100 (1323)
.+..+++-+. .++++++|-|..|+.|+++ ..+ ++.-..--.+.+| ...|.++..++||++..+++.||+++
T Consensus 17 ~Vt~la~~~~~~~~l~sasrDk~ii~W~L~--~dd--~~~G~~~r~~~GH----sH~v~dv~~s~dg~~alS~swD~~lr 88 (315)
T KOG0279|consen 17 WVTALAIKIKNSDILVSASRDKTIIVWKLT--SDD--IKYGVPVRRLTGH----SHFVSDVVLSSDGNFALSASWDGTLR 88 (315)
T ss_pred eEEEEEeecCCCceEEEcccceEEEEEEec--cCc--cccCceeeeeecc----ceEecceEEccCCceEEeccccceEE
Confidence 7788887766 7899999999999999995 222 1111000114555 34799999999999999999999999
Q ss_pred EEeCCCCeE--EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEE
Q 000736 101 LHSVDGNAT--EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1323)
Q Consensus 101 lw~~~~~~~--e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~ 178 (1323)
+||+.+++. ..+| |...|.+++||||...+++|+.|.||++|+..++...+..-. .+.+.|.+
T Consensus 89 lWDl~~g~~t~~f~G-H~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~--------------~~~~WVsc 153 (315)
T KOG0279|consen 89 LWDLATGESTRRFVG-HTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHED--------------SHREWVSC 153 (315)
T ss_pred EEEecCCcEEEEEEe-cCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecC--------------CCcCcEEE
Confidence 999998654 3666 588899999999999999999999999987666555444321 11357899
Q ss_pred EEEecC--CcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEe
Q 000736 179 ISWRGD--GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE 256 (1323)
Q Consensus 179 isWspD--G~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e 256 (1323)
+.|+|. .-+|+ +++ .|++|||||.++-++..++-+|.+.++.+++||||.++|+|+.| ..+.+|+
T Consensus 154 vrfsP~~~~p~Iv-s~s------~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkd------g~~~Lwd 220 (315)
T KOG0279|consen 154 VRFSPNESNPIIV-SAS------WDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKD------GEAMLWD 220 (315)
T ss_pred EEEcCCCCCcEEE-Ecc------CCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCC------ceEEEEE
Confidence 999998 56777 443 47999999998888888999999999999999999999999885 5699999
Q ss_pred CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCee--EEEeEEEEec---CCc--EEEEEcc
Q 000736 257 RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW--YLKYEIRYLR---RDG--IRFMWHP 329 (1323)
Q Consensus 257 ~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~w--ylkq~l~~~~---~~~--~~v~Wsp 329 (1323)
.|-.++- +.+. +...|.+++|||+--.|+.+.... |+||+...... .|+.+...+. .++ .+++|++
T Consensus 221 L~~~k~l-ysl~--a~~~v~sl~fspnrywL~~at~~s----IkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~ 293 (315)
T KOG0279|consen 221 LNEGKNL-YSLE--AFDIVNSLCFSPNRYWLCAATATS----IKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSA 293 (315)
T ss_pred ccCCcee-Eecc--CCCeEeeEEecCCceeEeeccCCc----eEEEeccchhhhhhccccccccccccCCcEEEEEEEcC
Confidence 8755542 2332 345799999999999999988775 99999976432 1233333321 123 7899999
Q ss_pred CCCcEEEEEecCCcEE
Q 000736 330 TKPLQLICWTLDGQIT 345 (1323)
Q Consensus 330 ~~~~~L~~~~~~g~~~ 345 (1323)
+|.. |..+..+|.+.
T Consensus 294 dG~t-Lf~g~td~~ir 308 (315)
T KOG0279|consen 294 DGQT-LFAGYTDNVIR 308 (315)
T ss_pred CCcE-EEeeecCCcEE
Confidence 9864 66666677664
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-23 Score=238.52 Aligned_cols=781 Identities=15% Similarity=0.158 Sum_probs=443.7
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1323)
.+..+||-|||..|..+.++. ++.+|.| -+.. ..+ +++| .+.|.+|+||.||+.+|+|++|..|++
T Consensus 14 ci~d~afkPDGsqL~lAAg~r-lliyD~n--dG~l---lqt----LKgH----KDtVycVAys~dGkrFASG~aDK~VI~ 79 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSR-LLVYDTS--DGTL---LQP----LKGH----KDTVYCVAYAKDGKRFASGSADKSVII 79 (1081)
T ss_pred chheeEECCCCceEEEecCCE-EEEEeCC--Cccc---ccc----cccc----cceEEEEEEccCCceeccCCCceeEEE
Confidence 567799999999999998887 8899994 2221 122 5666 478999999999999999999999999
Q ss_pred EeCCC-CeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEE
Q 000736 102 HSVDG-NATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1323)
Q Consensus 102 w~~~~-~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~is 180 (1323)
|+..- |.+. =+|.+.|.||+|+|=.+.||+++-. ..-+|+.+-+.+... -....+.+.+
T Consensus 80 W~~klEG~Lk--YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~-----------------kss~R~~~Cs 139 (1081)
T KOG1538|consen 80 WTSKLEGILK--YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKH-----------------KSSSRIICCS 139 (1081)
T ss_pred ecccccceee--eccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhh-----------------hhheeEEEee
Confidence 99753 2232 2468899999999999999999754 244554321111110 0114678999
Q ss_pred EecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeec---cCCCceeEEEEccCC-----CeEEEEecCCCCCCCCeE
Q 000736 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE---LKAFMGAVLEWMPSG-----ANIAAVYDRKSENKCPSI 252 (1323)
Q Consensus 181 WspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e---~~~~~v~slawsPdG-----~lIAs~s~d~~~~~~~~V 252 (1323)
|..||+||| .|- ++++|.|.|. +|+..-.-+ +.+..+++|+|+|+. ..+|+.... .++
T Consensus 140 WtnDGqyla-lG~------~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~------qTL 205 (1081)
T KOG1538|consen 140 WTNDGQYLA-LGM------FNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWG------QTL 205 (1081)
T ss_pred ecCCCcEEE-Eec------cCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEecc------cee
Confidence 999999999 873 4689999998 766544333 356679999999974 367777663 568
Q ss_pred EEEeCCCeeEE-EEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCc--EEEEEcc
Q 000736 253 VFYERNGLERS-SFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG--IRFMWHP 329 (1323)
Q Consensus 253 ~~~e~nGl~~~-~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~--~~v~Wsp 329 (1323)
.|+...|...+ +-++ +..-..|++-|+|+++..|+.|+ .+++++...-. -.++. +.+. ++|.-+|
T Consensus 206 SFy~LsG~~Igk~r~L----~FdP~CisYf~NGEy~LiGGsdk---~L~~fTR~Gvr---LGTvg--~~D~WIWtV~~~P 273 (1081)
T KOG1538|consen 206 SFYQLSGKQIGKDRAL----NFDPCCISYFTNGEYILLGGSDK---QLSLFTRDGVR---LGTVG--EQDSWIWTVQAKP 273 (1081)
T ss_pred EEEEecceeecccccC----CCCchhheeccCCcEEEEccCCC---ceEEEeecCeE---Eeecc--ccceeEEEEEEcc
Confidence 88888876655 2122 12345788999999999999998 78888876521 11111 1122 6677788
Q ss_pred CCCcEEEEEecCCcEEEEEEEEeeee--------CCCeeEEE-----EeCCEEEEeecCCcCCCCCceeeeecCCCCEEE
Q 000736 330 TKPLQLICWTLDGQITTYNFIWTTAV--------MENSTALV-----IDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTE 396 (1323)
Q Consensus 330 ~~~~~L~~~~~~g~~~~~~~~~~~~~--------~d~~~v~v-----iDg~~l~lt~l~~~~vPppm~~~~l~~~~~V~~ 396 (1323)
.+.. ..++++||++..++.++++-. ...++.-| +-+..+. +...+-|..
T Consensus 274 NsQ~-v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvr-----------------IkC~DLVkK 335 (1081)
T KOG1538|consen 274 NSQY-VVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVR-----------------IKCKDLVKK 335 (1081)
T ss_pred CCce-EEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceee-----------------eeHHHHHHH
Confidence 7764 889999999998888876540 00011000 1111111 111122333
Q ss_pred EEEecCCCCCEEEEEECCCcEEEEECCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCeeEEE
Q 000736 397 MAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFR 476 (1323)
Q Consensus 397 VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~ 476 (1323)
++... +.||+-..+ .|.||.+...... .-.+++... ....+.+ .++++.+. .+++.
T Consensus 336 iaiYr----nrLAVQLpe-ki~iYel~se~~~----~mhY~v~ek-------I~kkf~c----SLlVVc~~----HiVlC 391 (1081)
T KOG1538|consen 336 IAIYR----NRLAVQLPE-KILIYELYSEDLS----DMHYRVKEK-------IIKKFEC----SLLVVCAN----HIVLC 391 (1081)
T ss_pred HHhhh----hhheecccc-eEEEEeccccccc----cchhHHHHH-------HHhhccc----eEEEEEcC----eEEEE
Confidence 44432 468888777 6888888642211 000000000 0011111 12232221 22222
Q ss_pred ------EeecccCccccchhhhhhhhcccccccccccccccceeeeeecccCCcEEEEeeCCCCCceEEEEeeCCeEEEE
Q 000736 477 ------GATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEY 550 (1323)
Q Consensus 477 ------~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~q~~dG~v~~~ 550 (1323)
-+++.| ....| |+.. +.+. -+.|.-.|+..+++.+-+.+|.|++.
T Consensus 392 qekrLqClDF~G-----vk~Re------------------W~M~--S~iR----YikV~GGP~gREgL~vGlknGqV~ki 442 (1081)
T KOG1538|consen 392 QEKRLQCLDFSG-----VKERE------------------WQME--SLIR----YIKVIGGPPGREGLLVGLKNGQVLKI 442 (1081)
T ss_pred cccceeeecccc-----hhhhh------------------hhHH--HHHH----hhhhhcCCCCcceeEEEecCCcEEEE
Confidence 122222 11111 1111 0000 01122234456889999999999987
Q ss_pred eccccccCCCCCCCCCCCCCCCCceeEEEecCCCCCcceEEEEcCCCceee----CCEeee--cCceeEEE---eccCcc
Q 000736 551 MSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLHV----SGKIVC--NNCSSFSF---YSKSAG 621 (1323)
Q Consensus 551 ~~~~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~~gL~~~~~L~~----~~~~~~--~~~tSf~~---~~~~~~ 621 (1323)
-.+..+ |. --....-..-|-.+.+ + ...+--..+++++-+ ++.++- .+|.|.+. .++
T Consensus 443 F~dN~~-Pi--Ll~~~~tAvrClDINA-----~---R~kLAvVDD~~~c~v~DI~t~elL~QEpg~nSV~wNT~~E~--- 508 (1081)
T KOG1538|consen 443 FVDNLF-PI--LLLKQATAVRCLDINA-----S---RKKLAVVDDNDTCLVYDIDTKELLFQEPGANSVAWNTQCED--- 508 (1081)
T ss_pred EecCCc-hh--heecccceeEEeeccC-----C---cceEEEEccCCeEEEEEccCCceEeecCCCceEEeeccccc---
Confidence 443311 10 0000011111322211 0 122223333444332 233332 56777664 344
Q ss_pred ccceEEEEEeeCCeEEEEEcCccccccccccccccccccCccccccccccccccCCCE-EEEEeCCCCcEEEEEeCCCce
Q 000736 622 QAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAK-VIGVLHGDEAAVILQTNRGNL 700 (1323)
Q Consensus 622 ~~~~~Ll~tT~~~~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~R~vErGs~-iV~~~p~~~~~vVLQmpRGNL 700 (1323)
.|.||+. +-|.+=-+. .|. | ..+|-- +|+..-+. +-+. |||.
T Consensus 509 ----MlcfT~~-g~L~VR~~~-------------------~P~-------h-~qk~~G~VvG~~gsk-~FCL----~~~~ 551 (1081)
T KOG1538|consen 509 ----MLCFTGG-GYLNVRAST-------------------FPV-------H-RQKLQGFVVGYNGSK-IFCL----HVFS 551 (1081)
T ss_pred ----eEEEecC-CceEEEecc-------------------CCc-------c-hhcceEEEEEecCce-EEEE----Eeee
Confidence 6677665 343321111 010 1 122211 22222222 1111 2222
Q ss_pred eeccchhhhHHHHHHHHhcccHHHHHHHHHhccccccEEEecCCHHHHHHhHHHHHhhcCCcchhhHHHhhccCCccccc
Q 000736 701 ECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENITET 780 (1323)
Q Consensus 701 Eti~PR~lvL~~i~~~l~~~~y~~Af~~~R~hRIdlNll~D~~~p~~Fl~~i~~Fv~qv~~~~~l~lFls~L~~edvt~t 780 (1323)
-.--|.+++- ..-++|.++.|++| .||-===+++-| |+-.-..+= + +|. -|+...
T Consensus 552 i~~~evp~~~-~m~q~Ieag~f~ea------~~iaclgVv~~D-W~~LA~~AL---e-------------AL~-f~~ARk 606 (1081)
T KOG1538|consen 552 ISAVEVPQSA-PMYQYIERGLFKEA------YQIACLGVTDTD-WRELAMEAL---E-------------ALD-FETARK 606 (1081)
T ss_pred eecccccccc-cchhhhhccchhhh------hcccccceecch-HHHHHHHHH---h-------------hhh-hHHHHH
Confidence 1122333333 46688999999999 566544455666 654332111 1 010 011111
Q ss_pred cccccccccCCccccccCCCcccccccCCCcHHHHHHHHHHHHh---hcCCCCCcchhHHhHHhhcCCCccHHHHHHHHH
Q 000736 781 LYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALE---EKVPESPSRELCILTTLARSDPPALEEALERIK 857 (1323)
Q Consensus 781 ~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~KV~~iC~a~~~~l~---~~~~~~~~~~~~ilT~~v~~~pp~le~aL~~i~ 857 (1323)
-|..- .+ -| ... +...|+ ++...+...++.-+-||.+| +.+|-++.+
T Consensus 607 AY~rV-----Rd-----------------l~---~L~-li~EL~~~k~rge~P~~iLlA~~~Ay~gK----F~EAAklFk 656 (1081)
T KOG1538|consen 607 AYIRV-----RD-----------------LR---YLE-LISELEERKKRGETPNDLLLADVFAYQGK----FHEAAKLFK 656 (1081)
T ss_pred HHHHH-----hc-----------------cH---HHH-HHHHHHHHHhcCCCchHHHHHHHHHhhhh----HHHHHHHHH
Confidence 11100 00 00 000 011111 11011222222222233322 333433321
Q ss_pred HHHhhcccCCCCCCCCChhhHHHHHHHHHhhccHHHHHHHHHhccC----hhHHHHHHHHhcCCcccchHhHHHHhcCCc
Q 000736 858 IIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYD----LNLAAIVALNSQRDPKEFLPYLQELESMPP 933 (1323)
Q Consensus 858 ~l~~~~~~~~~~~~~~~~~~ae~alk~l~~L~d~~~Ly~~ALg~yD----~~lal~VAq~sqkDPkeYLpfL~~L~~l~~ 933 (1323)
+. |. =+.||+||- |++|..+.. -.+|+|=-. -
T Consensus 657 ---~~------G~------------------------enRAlEmyTDlRMFD~aQE~~~--~g~~~eKKm---------L 692 (1081)
T KOG1538|consen 657 ---RS------GH------------------------ENRALEMYTDLRMFDYAQEFLG--SGDPKEKKM---------L 692 (1081)
T ss_pred ---Hc------Cc------------------------hhhHHHHHHHHHHHHHHHHHhh--cCChHHHHH---------H
Confidence 11 00 134666663 344433321 135554111 1
Q ss_pred hhccccHHHHhcCHHHHHHHHHHcCCCcHHHHHHHHHHHhcchHHHHhhc-CCcHHHHHHHHHHHHHHhcccCHHHHHHH
Q 000736 934 LLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI-TDPAKMEQVLEAWADHLSDVKCFEDAATT 1012 (1323)
Q Consensus 934 ~~~~~~Id~~L~rye~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~-~d~~~~~~i~~~~A~~L~~~~~~~eAa~~ 1012 (1323)
-+.|++-.--.+...-|.+.|+.+|+ .++|++++.+| +--+.+.++. .=+..-++-++..|.||.....+--|+++
T Consensus 693 ~RKRA~WAr~~kePkaAAEmLiSaGe--~~KAi~i~~d~-gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeI 769 (1081)
T KOG1538|consen 693 IRKRADWARNIKEPKAAAEMLISAGE--HVKAIEICGDH-GWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEI 769 (1081)
T ss_pred HHHHHHHhhhcCCcHHHHHHhhcccc--hhhhhhhhhcc-cHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHH
Confidence 33455555556778889999999998 79999999999 8777777777 33333445677899999999999999999
Q ss_pred HHhcCCHHHHHHHHHHhCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHh
Q 000736 1013 YFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDA 1090 (1323)
Q Consensus 1013 y~~ag~~~kAl~~y~~ag~W~~al~lA~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~e~Av~~~i~~ 1090 (1323)
|.+.|+...-+++.+..++|.+|+++|.+++. =+.+++...|..|.+..+|.||-+.|.+ +|.-.+|++++-+.
T Consensus 770 F~k~gD~ksiVqlHve~~~W~eAFalAe~hPe---~~~dVy~pyaqwLAE~DrFeEAqkAfhk-AGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 770 FLKMGDLKSLVQLHVETQRWDEAFALAEKHPE---FKDDVYMPYAQWLAENDRFEEAQKAFHK-AGRQREAVQVLEQL 843 (1081)
T ss_pred HHHhccHHHHhhheeecccchHhHhhhhhCcc---ccccccchHHHHhhhhhhHHHHHHHHHH-hcchHHHHHHHHHh
Confidence 99999999999999999999999999999753 3356788899999999999999999999 88888888877654
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.4e-26 Score=251.36 Aligned_cols=283 Identities=16% Similarity=0.167 Sum_probs=219.7
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeee
Q 000736 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1323)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~ 154 (1323)
-.|..|.|.|+|+.|++|+..|.+.|||..+--.| +...|++.|+++.||++|.++++|+.+|.|+.|....+.+....
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ 176 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQ 176 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhh
Confidence 46899999999999999999999999998654445 67789999999999999999999999999999866555443333
Q ss_pred ecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCC
Q 000736 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG 234 (1323)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG 234 (1323)
.+ |+..|.+++|||.-.-|+|+| +|++|+|||-..++.-+.+.+|.-.|.+++|+|.-
T Consensus 177 ah---------------h~eaIRdlafSpnDskF~t~S-------dDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~k 234 (464)
T KOG0284|consen 177 AH---------------HAEAIRDLAFSPNDSKFLTCS-------DDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTK 234 (464)
T ss_pred Hh---------------hhhhhheeccCCCCceeEEec-------CCCeEEEEeccCCchhheeccCCCCcceeccCCcc
Confidence 22 335789999999777788453 36999999987777777778898899999999999
Q ss_pred CeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEe
Q 000736 235 ANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKY 313 (1323)
Q Consensus 235 ~lIAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq 313 (1323)
.+|||++.| +.|+|||. .|... .++.. +...|..+.|+|+|..|++++.|. .++++|.....- -+
T Consensus 235 gLiasgskD------nlVKlWDprSg~cl--~tlh~-HKntVl~~~f~~n~N~Llt~skD~---~~kv~DiR~mkE--l~ 300 (464)
T KOG0284|consen 235 GLIASGSKD------NLVKLWDPRSGSCL--ATLHG-HKNTVLAVKFNPNGNWLLTGSKDQ---SCKVFDIRTMKE--LF 300 (464)
T ss_pred ceeEEccCC------ceeEeecCCCcchh--hhhhh-ccceEEEEEEcCCCCeeEEccCCc---eEEEEehhHhHH--HH
Confidence 999999986 47999994 33211 12222 346799999999999999999999 999999874320 12
Q ss_pred EEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCC
Q 000736 314 EIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTA 393 (1323)
Q Consensus 314 ~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~~~~~ 393 (1323)
.++.|.++..++.|||-.+..+.++..||++.+ |.+. +......+|+ .|...
T Consensus 301 ~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh----~~v~-------------------~~~p~~~i~~-----AHd~~ 352 (464)
T KOG0284|consen 301 TYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVH----WVVG-------------------LEEPLGEIPP-----AHDGE 352 (464)
T ss_pred HhhcchhhheeeccccccccceeeccCCCceEE----Eecc-------------------ccccccCCCc-----ccccc
Confidence 334455566999999998877777777787753 2211 0010111222 47889
Q ss_pred EEEEEEecCCCCCEEEEEECCCcEEEEECCC
Q 000736 394 VTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1323)
Q Consensus 394 V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~ 424 (1323)
|++++|+|=| -+||+++.|.++++|....
T Consensus 353 iwsl~~hPlG--hil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 353 IWSLAYHPLG--HILATGSNDRTVRFWTRNR 381 (464)
T ss_pred eeeeeccccc--eeEeecCCCcceeeeccCC
Confidence 9999999999 8999999999999998764
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=224.80 Aligned_cols=298 Identities=15% Similarity=0.151 Sum_probs=221.5
Q ss_pred EeceecCcEEEEEEcCC-CCeEEEEeCCccEEEEeecC-ceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEE
Q 000736 111 VVGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMTHDW-DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYF 188 (1323)
Q Consensus 111 ~vg~~~~~I~~~awSPD-G~~LA~~s~d~tV~l~t~~~-d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~l 188 (1323)
....|.+.|+.++..|+ -++|.+++.|.++++|.-.- |..++.+.. .|.||...|..+.-++||+|+
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r-----------~~~GHsH~v~dv~~s~dg~~a 78 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVR-----------RLTGHSHFVSDVVLSSDGNFA 78 (315)
T ss_pred eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceee-----------eeeccceEecceEEccCCceE
Confidence 44457899999999998 57889999999999995322 222333332 244777888999999999998
Q ss_pred EEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec
Q 000736 189 ATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN 268 (1323)
Q Consensus 189 Atvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~ 268 (1323)
. +++ .|+++|+||..+|+....+.+|..-|.+++||||.+.|.||++|+ +|.+|+.-|.. .+++.
T Consensus 79 l-S~s------wD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDk------Tiklwnt~g~c--k~t~~ 143 (315)
T KOG0279|consen 79 L-SAS------WDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDK------TIKLWNTLGVC--KYTIH 143 (315)
T ss_pred E-ecc------ccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcc------eeeeeeecccE--EEEEe
Confidence 7 554 369999999999999999999999999999999999999999975 69999965532 34444
Q ss_pred cCC-CCcEEEEEEccC--CCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEE
Q 000736 269 EQI-DSTVELLKWNCM--SDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQIT 345 (1323)
Q Consensus 269 ~~~-~~~V~~laWSpD--g~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~ 345 (1323)
... .++|..+.|+|. .-+|++++.|+ +||+||..|.+ +++.+..+......+..||||.++ +.+..+
T Consensus 144 ~~~~~~WVscvrfsP~~~~p~Ivs~s~Dk---tvKvWnl~~~~--l~~~~~gh~~~v~t~~vSpDGslc-asGgkd---- 213 (315)
T KOG0279|consen 144 EDSHREWVSCVRFSPNESNPIIVSASWDK---TVKVWNLRNCQ--LRTTFIGHSGYVNTVTVSPDGSLC-ASGGKD---- 213 (315)
T ss_pred cCCCcCcEEEEEEcCCCCCcEEEEccCCc---eEEEEccCCcc--hhhccccccccEEEEEECCCCCEE-ecCCCC----
Confidence 333 679999999999 78999999999 99999999864 455555555555889999999752 232223
Q ss_pred EEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCCC
Q 000736 346 TYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1323)
Q Consensus 346 ~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~ 425 (1323)
..+.+|+++.. -+.+++++...|++++|+|+. ..|+.++.. .|+||++++.
T Consensus 214 ---------------------g~~~LwdL~~~-----k~lysl~a~~~v~sl~fspnr--ywL~~at~~-sIkIwdl~~~ 264 (315)
T KOG0279|consen 214 ---------------------GEAMLWDLNEG-----KNLYSLEAFDIVNSLCFSPNR--YWLCAATAT-SIKIWDLESK 264 (315)
T ss_pred ---------------------ceEEEEEccCC-----ceeEeccCCCeEeeEEecCCc--eeEeeccCC-ceEEEeccch
Confidence 34556666543 235788899999999999997 677777554 6999999987
Q ss_pred CccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCeeEEEEe
Q 000736 426 DMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1323)
Q Consensus 426 ~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1323)
.+..++.-...- ..++...-...+++|++||.-|..+..+ +-+.+|.+
T Consensus 265 ~~v~~l~~d~~g---~s~~~~~~~clslaws~dG~tLf~g~td--~~irv~qv 312 (315)
T KOG0279|consen 265 AVVEELKLDGIG---PSSKAGDPICLSLAWSADGQTLFAGYTD--NVIRVWQV 312 (315)
T ss_pred hhhhhccccccc---cccccCCcEEEEEEEcCCCcEEEeeecC--CcEEEEEe
Confidence 776554321110 0011112257889999999988877654 56677765
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-24 Score=263.40 Aligned_cols=318 Identities=15% Similarity=0.169 Sum_probs=225.8
Q ss_pred CCCEEEEEEecCCCEEEEEe--CCCcEEEEeCCC-------------CeEEEeceecCcEEEEEEcCCCCeEEEEeCCcc
Q 000736 75 GDSITAFDYLMEKEALIVGT--SSGLLLLHSVDG-------------NATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQ 139 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~La~as--~dG~I~lw~~~~-------------~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~t 139 (1323)
+..|.+|+.+|||..+|+|+ .||.+.+|+.+. +.+-.+-.|.+.|+|+.|||||++||+||+|+-
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~ 92 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL 92 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence 35689999999999999999 999999999753 011244567899999999999999999999999
Q ss_pred EEEEeecCceeeeeeecccCCCceec----cCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCcee
Q 000736 140 ILVMTHDWDLLYENPLEELAEGFDVH----EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQ 215 (1323)
Q Consensus 140 V~l~t~~~d~~~e~~l~~~~~~~~Vs----~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~ 215 (1323)
|.+|.+..-........+.. .+.+. -..+.+|+..|..+.|+||+.+|| +.+. |++|-|||..+.++.
T Consensus 93 v~iW~~~~~~~~~~fgs~g~-~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lv-S~s~------DnsViiwn~~tF~~~ 164 (942)
T KOG0973|consen 93 VMIWERAEIGSGTVFGSTGG-AKNVESWKVVSILRGHDSDVLDVNWSPDDSLLV-SVSL------DNSVIIWNAKTFELL 164 (942)
T ss_pred EEEeeecccCCccccccccc-ccccceeeEEEEEecCCCccceeccCCCccEEE-Eecc------cceEEEEccccceee
Confidence 99998764122222211111 01110 123448999999999999999999 4444 589999999999999
Q ss_pred eeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCe--eEEEEEec---cCCCCcEEEEEEccCCCeeEEE
Q 000736 216 ASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL--ERSSFDIN---EQIDSTVELLKWNCMSDLLAAV 290 (1323)
Q Consensus 216 ~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl--~~~~f~l~---~~~~~~V~~laWSpDg~~LA~~ 290 (1323)
.++++|.++|..++|-|-|+++||-++| .+|++|..+.+ .|. .+-+ .+.+.....++|||||++||+.
T Consensus 165 ~vl~~H~s~VKGvs~DP~Gky~ASqsdD------rtikvwrt~dw~i~k~-It~pf~~~~~~T~f~RlSWSPDG~~las~ 237 (942)
T KOG0973|consen 165 KVLRGHQSLVKGVSWDPIGKYFASQSDD------RTLKVWRTSDWGIEKS-ITKPFEESPLTTFFLRLSWSPDGHHLASP 237 (942)
T ss_pred eeeecccccccceEECCccCeeeeecCC------ceEEEEEcccceeeEe-eccchhhCCCcceeeecccCCCcCeecch
Confidence 9999999999999999999999999997 46999985532 221 1111 1223468899999999999997
Q ss_pred Ec-cCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEE-EeCCE
Q 000736 291 VR-FEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALV-IDGSK 368 (1323)
Q Consensus 291 ~~-d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~v-iDg~~ 368 (1323)
.. ++++.+++|.+.++ |.-.+.+.+|......+.|+|-=-. --..+|.....+..+ .++|+ .-+..
T Consensus 238 nA~n~~~~~~~IieR~t--Wk~~~~LvGH~~p~evvrFnP~lfe---~~~~ng~~~~~~~~y-------~i~AvgSqDrS 305 (942)
T KOG0973|consen 238 NAVNGGKSTIAIIERGT--WKVDKDLVGHSAPVEVVRFNPKLFE---RNNKNGTSTQPNCYY-------CIAAVGSQDRS 305 (942)
T ss_pred hhccCCcceeEEEecCC--ceeeeeeecCCCceEEEEeChHHhc---cccccCCccCCCcce-------EEEEEecCCcc
Confidence 54 33466999999976 5445667776553388899973110 000123221111000 12222 23445
Q ss_pred EEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCC
Q 000736 369 ILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1323)
Q Consensus 369 l~lt~l~~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~ 424 (1323)
|.+|... .|.||..-.=-+...|.+++||||| -.|.+.|.||+|.+..++.
T Consensus 306 lSVW~T~---~~RPl~vi~~lf~~SI~DmsWspdG--~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 306 LSVWNTA---LPRPLFVIHNLFNKSIVDMSWSPDG--FSLFACSLDGTVALIHFEE 356 (942)
T ss_pred EEEEecC---CCCchhhhhhhhcCceeeeeEcCCC--CeEEEEecCCeEEEEEcch
Confidence 7777663 3677753211257789999999999 8899999999999999975
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-22 Score=242.08 Aligned_cols=305 Identities=12% Similarity=0.100 Sum_probs=215.9
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe-EEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeee
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~-~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~ 153 (1323)
..+|-+++|+|.-..+.++-.+|.|.+||-.-+. ++.+..|+|+|+.++|.|++-++++|+.|-+|++|+-. ...
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk----~rr 84 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK----TRR 84 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc----cce
Confidence 3589999999999999999999999999987654 45666789999999999999999999999999999732 112
Q ss_pred eecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccC
Q 000736 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS 233 (1323)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPd 233 (1323)
++-+.. ||.+.|..+.|.+.=-++. ++| .|.||||||-.+++++.++.+|...|.+-.|.|.
T Consensus 85 clftL~-----------GHlDYVRt~~FHheyPWIl-SAS------DDQTIrIWNwqsr~~iavltGHnHYVMcAqFhpt 146 (1202)
T KOG0292|consen 85 CLFTLL-----------GHLDYVRTVFFHHEYPWIL-SAS------DDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPT 146 (1202)
T ss_pred ehhhhc-----------cccceeEEeeccCCCceEE-Ecc------CCCeEEEEeccCCceEEEEecCceEEEeeccCCc
Confidence 222222 7778899999999999998 554 3689999999999999999999999999999999
Q ss_pred CCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeE---EEEccCCCCeEEEEEeeCCeeE
Q 000736 234 GANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLA---AVVRFEEYDSVKICFFSNNHWY 310 (1323)
Q Consensus 234 G~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA---~~~~d~~~~~V~LW~~~n~~wy 310 (1323)
-.+|+|+|-| .+|++||..|++.+... ++ ++.=-+-|..+. .+..|- .|+.
T Consensus 147 EDlIVSaSLD------QTVRVWDisGLRkk~~~-pg-------~~e~~~~~~~~~~dLfg~~Da---VVK~--------- 200 (1202)
T KOG0292|consen 147 EDLIVSASLD------QTVRVWDISGLRKKNKA-PG-------SLEDQMRGQQGNSDLFGQTDA---VVKH--------- 200 (1202)
T ss_pred cceEEEeccc------ceEEEEeecchhccCCC-CC-------CchhhhhccccchhhcCCcCe---eeee---------
Confidence 9999999997 46999999998765310 00 000001111111 111121 3331
Q ss_pred EEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCC---cCCCCCceeee
Q 000736 311 LKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSL---SLMPPPMYLFS 387 (1323)
Q Consensus 311 lkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~---~~vPppm~~~~ 387 (1323)
.+.+|.....-++|||.-|. ++.+. |+..|++|.... |-+. .|
T Consensus 201 ---VLEGHDRGVNwaAfhpTlpl-iVSG~-------------------------DDRqVKlWrmnetKaWEvD--tc--- 246 (1202)
T KOG0292|consen 201 ---VLEGHDRGVNWAAFHPTLPL-IVSGA-------------------------DDRQVKLWRMNETKAWEVD--TC--- 246 (1202)
T ss_pred ---eecccccccceEEecCCcce-EEecC-------------------------CcceeeEEEeccccceeeh--hh---
Confidence 33333333356677777664 33322 222333333221 1110 01
Q ss_pred ecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEec
Q 000736 388 LKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHH 467 (1323)
Q Consensus 388 l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~ 467 (1323)
-.|-++|.+|-|+|.. +++.+.+.|++|++||.+.....+++. ...++.|-++-.|...++|++++
T Consensus 247 rgH~nnVssvlfhp~q--~lIlSnsEDksirVwDm~kRt~v~tfr------------rendRFW~laahP~lNLfAAgHD 312 (1202)
T KOG0292|consen 247 RGHYNNVSSVLFHPHQ--DLILSNSEDKSIRVWDMTKRTSVQTFR------------RENDRFWILAAHPELNLFAAGHD 312 (1202)
T ss_pred hcccCCcceEEecCcc--ceeEecCCCccEEEEecccccceeeee------------ccCCeEEEEEecCCcceeeeecC
Confidence 1478899999999988 899999999999999998654443221 13468999999999999999887
Q ss_pred CCCCeeEEEEe
Q 000736 468 GPRHSNYFRGA 478 (1323)
Q Consensus 468 ~~~~~~~~~~~ 478 (1323)
+ ...++.+
T Consensus 313 s---Gm~VFkl 320 (1202)
T KOG0292|consen 313 S---GMIVFKL 320 (1202)
T ss_pred C---ceEEEEE
Confidence 3 3444444
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-22 Score=238.17 Aligned_cols=446 Identities=15% Similarity=0.079 Sum_probs=293.5
Q ss_pred EeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000736 26 SALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVD 105 (1323)
Q Consensus 26 ~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~~ 105 (1323)
++|+++|+.||+.+.+- |+..|+ .++.. . +|+.- ....+.+++++..||++.|.+++.++-+++|+++
T Consensus 25 ~~~s~nG~~L~t~~~d~-Vi~idv--~t~~~----~-l~s~~----~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~ 92 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDR-VIIIDV--ATGSI----A-LPSGS----NEDEDEITALALTPDEEVLVTASRSQLLRVWSLP 92 (775)
T ss_pred eeECCCCCEEEEecCce-EEEEEc--cCCce----e-cccCC----ccchhhhheeeecCCccEEEEeeccceEEEEEcc
Confidence 89999999999999887 777888 45542 1 23221 1114789999999999999999999999999999
Q ss_pred CCeE-E-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccC-CCceeccCccc------------
Q 000736 106 GNAT-E-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELA-EGFDVHEPELS------------ 170 (1323)
Q Consensus 106 ~~~~-e-~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~-~~~~Vs~tqf~------------ 170 (1323)
++++ . ....|+++|.-++|+|-|.+||+|+.|+.|++|+-. .+...|... +++.|+..-|+
T Consensus 93 tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~----~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~ 168 (775)
T KOG0319|consen 93 TGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIK----NGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGA 168 (775)
T ss_pred cchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEee----CCEEEEEecCCCceEEEEEeCCccchhheeecC
Confidence 8764 2 556689999999999999999999999999998643 222222222 23333322222
Q ss_pred ---------------------cCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEE
Q 000736 171 ---------------------SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLE 229 (1323)
Q Consensus 171 ---------------------~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~sla 229 (1323)
.|...+.++++++||.-+.++ +.|+.+-|||..+-+...+.+-..+. .++.
T Consensus 169 ~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~-------~RDkvi~vwd~~~~~~l~~lp~ye~~-E~vv 240 (775)
T KOG0319|consen 169 TDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSV-------GRDKVIIVWDLVQYKKLKTLPLYESL-ESVV 240 (775)
T ss_pred CCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEe-------ccCcEEEEeehhhhhhhheechhhhe-eeEE
Confidence 578899999999999888733 34689999998665555554432222 3444
Q ss_pred EccC-----CCeEEEEecCCC-----------------C--------------------CCCCeEEEEeCCCe-------
Q 000736 230 WMPS-----GANIAAVYDRKS-----------------E--------------------NKCPSIVFYERNGL------- 260 (1323)
Q Consensus 230 wsPd-----G~lIAs~s~d~~-----------------~--------------------~~~~~V~~~e~nGl------- 260 (1323)
+-++ |.+|.+++..+. . ...+.+.++|...+
T Consensus 241 ~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~iv 320 (775)
T KOG0319|consen 241 RLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIV 320 (775)
T ss_pred EechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhc
Confidence 4444 444444433210 0 00122333321110
Q ss_pred --------------------------eEEEEEec-------cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCC
Q 000736 261 --------------------------ERSSFDIN-------EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1323)
Q Consensus 261 --------------------------~~~~f~l~-------~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~ 307 (1323)
..+-|+++ ..|+..|.+|.-..+|.+||+++.|. +|+||..+|.
T Consensus 321 G~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~---svilWr~~~~ 397 (775)
T KOG0319|consen 321 GYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDK---SVILWRLNNN 397 (775)
T ss_pred CCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCc---eEEEEEecCC
Confidence 00111111 11245688888556679999999999 9999998553
Q ss_pred eeE--EEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEE------------------------Ee--eeeCCCe
Q 000736 308 HWY--LKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFI------------------------WT--TAVMENS 359 (1323)
Q Consensus 308 ~wy--lkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~------------------------~~--~~~~d~~ 359 (1323)
.-. ..+....|......++.+.-++.-++.+++|+++..+... .. ++|+|.-
T Consensus 398 ~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkL 477 (775)
T KOG0319|consen 398 CSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKL 477 (775)
T ss_pred cchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCce
Confidence 210 0011123333334555555554444555555544332111 11 1155555
Q ss_pred eEEEEeCCEEEEeecCCcCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCCCCccccccCCceeE
Q 000736 360 TALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVV 438 (1323)
Q Consensus 360 ~v~viDg~~l~lt~l~~~~vPppm~~~~l-~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~ 438 (1323)
++...-+++.++|.+... .-..+| .|...|++|.|+|.. +.+|+.|.|+||+||.+++..|++++.||+
T Consensus 478 iAT~SqDktaKiW~le~~-----~l~~vLsGH~RGvw~V~Fs~~d--q~laT~SgD~TvKIW~is~fSClkT~eGH~--- 547 (775)
T KOG0319|consen 478 IATGSQDKTAKIWDLEQL-----RLLGVLSGHTRGVWCVSFSKND--QLLATCSGDKTVKIWSISTFSCLKTFEGHT--- 547 (775)
T ss_pred EEecccccceeeecccCc-----eEEEEeeCCccceEEEEecccc--ceeEeccCCceEEEEEeccceeeeeecCcc---
Confidence 555667788899887522 223345 488899999999998 999999999999999999999999998864
Q ss_pred eeeccccccCcEEEEEEecCCeEEEEEecCCCCeeEEEEeecccCccccchhhhhhhhcccccccccccccccceeeeee
Q 000736 439 EACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQ 518 (1323)
Q Consensus 439 ~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (1323)
..|....|..+|+.|.++..+ .-+++|+++-+. .++ +.
T Consensus 548 ---------~aVlra~F~~~~~qliS~~ad--GliKlWnikt~e------------C~~-------------------tl 585 (775)
T KOG0319|consen 548 ---------SAVLRASFIRNGKQLISAGAD--GLIKLWNIKTNE------------CEM-------------------TL 585 (775)
T ss_pred ---------ceeEeeeeeeCCcEEEeccCC--CcEEEEeccchh------------hhh-------------------hh
Confidence 467788999999988876544 688999985322 111 12
Q ss_pred cccCCcEEEEeeCCCCCceEEEEeeCCeEEEEe
Q 000736 519 IPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYM 551 (1323)
Q Consensus 519 ~~~~~~v~~v~~~~~~~~~~~~q~~dG~v~~~~ 551 (1323)
-.++.+|=+++.++ ..+.++-...||++..|.
T Consensus 586 D~H~DrvWaL~~~~-~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 586 DAHNDRVWALSVSP-LLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred hhccceeEEEeecC-ccceeEecCCCeEEEEee
Confidence 34577888887777 666666678899999884
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=240.02 Aligned_cols=377 Identities=15% Similarity=0.132 Sum_probs=274.2
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1323)
.++.+-||..|..+.++|.|+.|+.||+ ....+-.+ +++| .+.|+..-|+-+.+.|++.+.|+.|++
T Consensus 109 AVt~l~fd~~G~rlaSGskDt~IIvwDl--V~E~Gl~r-------L~GH----kd~iT~~~F~~~~~~lvS~sKDs~iK~ 175 (888)
T KOG0306|consen 109 AVTTLKFDKIGTRLASGSKDTDIIVWDL--VGEEGLFR-------LRGH----KDSITQALFLNGDSFLVSVSKDSMIKF 175 (888)
T ss_pred ceEEEEEcccCceEeecCCCccEEEEEe--ccceeeEE-------eecc----hHHHhHHhccCCCeEEEEeccCceEEE
Confidence 6788899999999999999999999999 44443222 5666 468999999998999999999999999
Q ss_pred EeCCCCeE-EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCce--------ee--------------eeeeccc
Q 000736 102 HSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDL--------LY--------------ENPLEEL 158 (1323)
Q Consensus 102 w~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~--------~~--------------e~~l~~~ 158 (1323)
||+.++.+ ++.-.|.+.|+++++.+ +.+++++.|+.+++|.-.++. ++ +..+..+
T Consensus 176 WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d 253 (888)
T KOG0306|consen 176 WDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTD 253 (888)
T ss_pred EecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeec
Confidence 99999776 44444688999999998 789999999999999652110 00 0000000
Q ss_pred CCCceec-------------------------------------------------------------------------
Q 000736 159 AEGFDVH------------------------------------------------------------------------- 165 (1323)
Q Consensus 159 ~~~~~Vs------------------------------------------------------------------------- 165 (1323)
....++.
T Consensus 254 ~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~ 333 (888)
T KOG0306|consen 254 FSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGG 333 (888)
T ss_pred CcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCC
Confidence 0000000
Q ss_pred -c-------------------------------CccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCc
Q 000736 166 -E-------------------------------PELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT 213 (1323)
Q Consensus 166 -~-------------------------------tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~ 213 (1323)
+ ..+.+|...|.++++|.|...++ ++ +.+.|+|||+.+++
T Consensus 334 ~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~-Sg-------a~~SikiWn~~t~k 405 (888)
T KOG0306|consen 334 TENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLA-SG-------AGESIKIWNRDTLK 405 (888)
T ss_pred cceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeee-ec-------CCCcEEEEEccCcc
Confidence 0 00115666778888888887777 43 24789999998777
Q ss_pred eeeeec----------------------------------------cCCCceeEEEEccCCCeEEEEecCCCCCCCCeEE
Q 000736 214 LQASSE----------------------------------------LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV 253 (1323)
Q Consensus 214 l~~t~e----------------------------------------~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~ 253 (1323)
++.|.+ .|+|.+++++-+|||+-.++++.| .+|+
T Consensus 406 ciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saD------ktVk 479 (888)
T KOG0306|consen 406 CIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSAD------KTVK 479 (888)
T ss_pred eeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCC------cEEE
Confidence 666543 367778999999999999999987 4699
Q ss_pred EEeC------CCeeEEEEEec----cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcE
Q 000736 254 FYER------NGLERSSFDIN----EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGI 323 (1323)
Q Consensus 254 ~~e~------nGl~~~~f~l~----~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~ 323 (1323)
||+- +|.+..-..+. ..-+..|.++++||||++||++.-|. ||+++.+++.+.|+ .+.+|.--..
T Consensus 480 fWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdn---TVkVyflDtlKFfl--sLYGHkLPV~ 554 (888)
T KOG0306|consen 480 FWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDN---TVKVYFLDTLKFFL--SLYGHKLPVL 554 (888)
T ss_pred EEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccC---eEEEEEecceeeee--eeccccccee
Confidence 9972 34433222222 11245699999999999999999998 99999999987765 4444322227
Q ss_pred EEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeee-cCCCCEEEEEEecC
Q 000736 324 RFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSK 402 (1323)
Q Consensus 324 ~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l-~~~~~V~~VaFSpd 402 (1323)
++.-+||+.. +..++. +++|++|-+.=+ -|++++ .|++.|.+|-|-|+
T Consensus 555 smDIS~DSkl-ivTgSA-------------------------DKnVKiWGLdFG-----DCHKS~fAHdDSvm~V~F~P~ 603 (888)
T KOG0306|consen 555 SMDISPDSKL-IVTGSA-------------------------DKNVKIWGLDFG-----DCHKSFFAHDDSVMSVQFLPK 603 (888)
T ss_pred EEeccCCcCe-EEeccC-------------------------CCceEEeccccc-----hhhhhhhcccCceeEEEEccc
Confidence 7888888764 333322 345666644322 266666 69999999999998
Q ss_pred CCCCEEEEEECCCcEEEEECCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCeeEEEEee
Q 000736 403 SSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGAT 479 (1323)
Q Consensus 403 g~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~ 479 (1323)
. ..+.+++.||.|+-||-+...+.+.+.|| ...|+.++-+|+|.++++++++ .++.+|..+
T Consensus 604 ~--~~FFt~gKD~kvKqWDg~kFe~iq~L~~H------------~~ev~cLav~~~G~~vvs~shD--~sIRlwE~t 664 (888)
T KOG0306|consen 604 T--HLFFTCGKDGKVKQWDGEKFEEIQKLDGH------------HSEVWCLAVSPNGSFVVSSSHD--KSIRLWERT 664 (888)
T ss_pred c--eeEEEecCcceEEeechhhhhhheeeccc------------hheeeeeEEcCCCCeEEeccCC--ceeEeeecc
Confidence 7 78999999999999998776666556654 4579999999999999998876 678888763
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-22 Score=215.21 Aligned_cols=284 Identities=15% Similarity=0.158 Sum_probs=214.8
Q ss_pred cccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC-CeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEee
Q 000736 67 IEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDG-NATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH 145 (1323)
Q Consensus 67 ~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~~~-~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~ 145 (1323)
|++| .++|.+++|++|++.|+++|.||.+++||.-| .+...+.--..+|...||||.|+.+|.|+-|+...+...
T Consensus 51 LkGH----~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 51 LKGH----LNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred eccc----ccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 6666 47999999999999999999999999999866 444444434678999999999999999999998877642
Q ss_pred cCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCce
Q 000736 146 DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMG 225 (1323)
Q Consensus 146 ~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v 225 (1323)
...-. +....| ...+.+|.+.+.+..|-+|+++|- .| +|.+.-+||.++|+....+.+|.+-|
T Consensus 127 s~~d~--------~g~~~v-~r~l~gHtgylScC~f~dD~~ilT-~S-------GD~TCalWDie~g~~~~~f~GH~gDV 189 (343)
T KOG0286|consen 127 STRDA--------EGNVRV-SRELAGHTGYLSCCRFLDDNHILT-GS-------GDMTCALWDIETGQQTQVFHGHTGDV 189 (343)
T ss_pred ccccc--------ccccee-eeeecCccceeEEEEEcCCCceEe-cC-------CCceEEEEEcccceEEEEecCCcccE
Confidence 21100 000111 123447888889999999998764 33 47899999999999999999999999
Q ss_pred eEEEEcc-CCCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEE
Q 000736 226 AVLEWMP-SGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICF 303 (1323)
Q Consensus 226 ~slawsP-dG~lIAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~ 303 (1323)
-+|+++| +++..+||+.|+ ..++|| |.|.-.+.| ++ ++..|++|.|-|+|.-+|+++.|+ +.+++|
T Consensus 190 ~slsl~p~~~ntFvSg~cD~------~aklWD~R~~~c~qtF--~g-hesDINsv~ffP~G~afatGSDD~---tcRlyD 257 (343)
T KOG0286|consen 190 MSLSLSPSDGNTFVSGGCDK------SAKLWDVRSGQCVQTF--EG-HESDINSVRFFPSGDAFATGSDDA---TCRLYD 257 (343)
T ss_pred EEEecCCCCCCeEEeccccc------ceeeeeccCcceeEee--cc-cccccceEEEccCCCeeeecCCCc---eeEEEe
Confidence 9999999 999999999875 488999 566444444 33 366799999999999999999999 999999
Q ss_pred eeCCeeEEEeEEE-EecC---Cc-EEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcC
Q 000736 304 FSNNHWYLKYEIR-YLRR---DG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSL 378 (1323)
Q Consensus 304 ~~n~~wylkq~l~-~~~~---~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~ 378 (1323)
+...+ ++. |.+. .+ +++.||..|.+ |..+..|.... +|++- -|.++
T Consensus 258 lRaD~-----~~a~ys~~~~~~gitSv~FS~SGRl-Lfagy~d~~c~----vWDtl----------k~e~v--------- 308 (343)
T KOG0286|consen 258 LRADQ-----ELAVYSHDSIICGITSVAFSKSGRL-LFAGYDDFTCN----VWDTL----------KGERV--------- 308 (343)
T ss_pred ecCCc-----EEeeeccCcccCCceeEEEcccccE-EEeeecCCcee----Eeecc----------ccceE---------
Confidence 97643 333 3221 23 78899887754 44444343332 34322 11111
Q ss_pred CCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEE
Q 000736 379 MPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1323)
Q Consensus 379 vPppm~~~~l-~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~ 421 (1323)
-.| .|...|.++..+||| ..+|+++.|.+++||.
T Consensus 309 -------g~L~GHeNRvScl~~s~DG--~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 309 -------GVLAGHENRVSCLGVSPDG--MAVATGSWDSTLRIWA 343 (343)
T ss_pred -------EEeeccCCeeEEEEECCCC--cEEEecchhHheeecC
Confidence 122 589999999999999 8999999999999994
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.2e-24 Score=252.52 Aligned_cols=245 Identities=14% Similarity=0.154 Sum_probs=196.5
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEeccccccc-----ccceeeccc---cc----------------cccccCCCCCC
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNE-----RASIKTAIS---AE----------------IEHIDLEPGDS 77 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~-----~~~~~~~l~---~~----------------~~~~~~~~~~~ 77 (1323)
.+.|..|..|+..+..+..|+.|+.|.+. ..+ ....+..++ ++ +.+| ++.
T Consensus 380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl~--p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH----~GP 453 (707)
T KOG0263|consen 380 GVTCAEFSDDSSMLACGFVDSSVRVWSLT--PKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGH----SGP 453 (707)
T ss_pred cceeEeecCCcchhhccccccEEEEEecc--hhhhccccchhhhccccccccchhhhhccccCCceeEEeecC----CCc
Confidence 56777888888888888888899999993 211 001111111 00 2233 689
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeec
Q 000736 78 ITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLE 156 (1323)
Q Consensus 78 V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~ 156 (1323)
|.+..|+||.++|+++|+|++|+||++++..+- ....|..+|+.+.|+|-|=++|++|.|+|..+|+.+- ..+++
T Consensus 454 Vyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~----~~PlR 529 (707)
T KOG0263|consen 454 VYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH----NKPLR 529 (707)
T ss_pred eeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc----CCchh
Confidence 999999999999999999999999999986543 2334688999999999999999999999999987542 22222
Q ss_pred ccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCe
Q 000736 157 ELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGAN 236 (1323)
Q Consensus 157 ~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~l 236 (1323)
-|.+|-..+.+++|.|++.|+| .+|. |++||+||..+|.....+.+|.+.|.+|+|||+|++
T Consensus 530 -----------ifaghlsDV~cv~FHPNs~Y~a-TGSs------D~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~ 591 (707)
T KOG0263|consen 530 -----------IFAGHLSDVDCVSFHPNSNYVA-TGSS------DRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRY 591 (707)
T ss_pred -----------hhcccccccceEEECCcccccc-cCCC------CceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCce
Confidence 2446777889999999999999 6643 699999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeC
Q 000736 237 IAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1323)
Q Consensus 237 IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n 306 (1323)
||||+.+ +.|.+||. +|....++ .+| ++.|.+|.||.||.+||+++.|. +|++||+..
T Consensus 592 LaSg~ed------~~I~iWDl~~~~~v~~l--~~H-t~ti~SlsFS~dg~vLasgg~Dn---sV~lWD~~~ 650 (707)
T KOG0263|consen 592 LASGDED------GLIKIWDLANGSLVKQL--KGH-TGTIYSLSFSRDGNVLASGGADN---SVRLWDLTK 650 (707)
T ss_pred EeecccC------CcEEEEEcCCCcchhhh--hcc-cCceeEEEEecCCCEEEecCCCC---eEEEEEchh
Confidence 9999986 46999994 55655543 344 78899999999999999999998 999999864
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.8e-21 Score=217.86 Aligned_cols=231 Identities=11% Similarity=0.143 Sum_probs=172.2
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEec-------CCCEEEEEe
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM-------EKEALIVGT 94 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~sp-------dg~~La~as 94 (1323)
.+++..|-. +..+|++++|++++.|.- .+.+. ..+..+|.++ .| +++...| ..+.+++.+
T Consensus 16 ~vc~v~w~~-~eei~~~~dDh~~~~~~~--~~~~s-~~~~~~p~df-----~p----t~~h~~~rs~~~g~~~d~~~i~s 82 (737)
T KOG1524|consen 16 KVCCVDWSS-NEEIYFVSDDHQIFKWSD--VSRDS-VEVAKLPDDF-----VP----TDMHLGGRSSGGGKGSDTLLICS 82 (737)
T ss_pred eEEeecccc-cceEEEeccCceEEEeec--ccchh-hhhhhCCccc-----CC----ccccccccccCCCCCcceEEEEc
Confidence 455666655 455666666665665543 23332 3344455442 11 2222222 236899999
Q ss_pred CCCcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecC----------ceeeeeeecccC-----
Q 000736 95 SSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDW----------DLLYENPLEELA----- 159 (1323)
Q Consensus 95 ~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~----------d~~~e~~l~~~~----- 159 (1323)
.||.+.|.+..++--..+..|.+.|.|..|||||.-|+++++||.|++|+|.+ .+++...+.+..
T Consensus 83 ~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~ 162 (737)
T KOG1524|consen 83 NDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVF 162 (737)
T ss_pred CCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEE
Confidence 99999999987643336778899999999999999999999999999999864 344555555544
Q ss_pred -CCceec---------cCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEE
Q 000736 160 -EGFDVH---------EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLE 229 (1323)
Q Consensus 160 -~~~~Vs---------~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~sla 229 (1323)
.+++++ ..+|++||+-|.+++|++....++ ++ ++|.++||||. .|+.+.++.+|+..++++|
T Consensus 163 c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~-sg------GED~kfKvWD~-~G~~Lf~S~~~ey~ITSva 234 (737)
T KOG1524|consen 163 CQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIA-SG------GEDFRFKIWDA-QGANLFTSAAEEYAITSVA 234 (737)
T ss_pred ecCCeEEEeecccccceeEEeccCcEEEEeecCcccccee-ec------CCceeEEeecc-cCcccccCChhccceeeee
Confidence 344443 457889999999999999999999 55 46799999999 9999999999999999999
Q ss_pred EccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccC
Q 000736 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE 294 (1323)
Q Consensus 230 wsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~ 294 (1323)
|.|+ .+.|.++.. +.+ +..+..+.|..|+|||||+.+|.|+..+
T Consensus 235 ~npd-~~~~v~S~n-------t~R-------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G 278 (737)
T KOG1524|consen 235 FNPE-KDYLLWSYN-------TAR-------------FSSPRVGSIFNLSWSADGTQATCGTSTG 278 (737)
T ss_pred eccc-cceeeeeee-------eee-------------ecCCCccceEEEEEcCCCceeeccccCc
Confidence 9999 888887752 333 2233456899999999999999999887
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-22 Score=226.38 Aligned_cols=327 Identities=15% Similarity=0.164 Sum_probs=239.8
Q ss_pred CCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCC--CeEE----------Eece---ecCcEEEEEEcCCCCeEEEEeCCc
Q 000736 75 GDSITAFDYLMEKE-ALIVGTSSGLLLLHSVDG--NATE----------VVGR---VEGGVRFISPSPDGDLLGVTTGFG 138 (1323)
Q Consensus 75 ~~~V~~v~~spdg~-~La~as~dG~I~lw~~~~--~~~e----------~vg~---~~~~I~~~awSPDG~~LA~~s~d~ 138 (1323)
...|...+|.|-.+ .|++++.|-+.++|++.. ...+ .-|. -...|++++||.||.+||+|+.||
T Consensus 178 ~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G 257 (524)
T KOG0273|consen 178 ESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDG 257 (524)
T ss_pred CCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCc
Confidence 45699999999887 999999999999999863 1111 0111 135699999999999999999999
Q ss_pred cEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeee
Q 000736 139 QILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS 218 (1323)
Q Consensus 139 tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~ 218 (1323)
.+++|+.++..+.... .|.++|.++.|+.+|.||+ ++++ |+++-+||.-+|+....+
T Consensus 258 ~~riw~~~G~l~~tl~----------------~HkgPI~slKWnk~G~yil-S~~v------D~ttilwd~~~g~~~q~f 314 (524)
T KOG0273|consen 258 EARIWNKDGNLISTLG----------------QHKGPIFSLKWNKKGTYIL-SGGV------DGTTILWDAHTGTVKQQF 314 (524)
T ss_pred EEEEEecCchhhhhhh----------------ccCCceEEEEEcCCCCEEE-eccC------CccEEEEeccCceEEEee
Confidence 9999998887665433 3456789999999999999 6654 589999999899988888
Q ss_pred ccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCe
Q 000736 219 ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDS 298 (1323)
Q Consensus 219 e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~ 298 (1323)
+-|....-.|.|.-+-. +|+++-| ..|.++-..+.+-- -++.+ |.+.|..|.|+|.|.+||++++|+ |
T Consensus 315 ~~~s~~~lDVdW~~~~~-F~ts~td------~~i~V~kv~~~~P~-~t~~G-H~g~V~alk~n~tg~LLaS~SdD~---T 382 (524)
T KOG0273|consen 315 EFHSAPALDVDWQSNDE-FATSSTD------GCIHVCKVGEDRPV-KTFIG-HHGEVNALKWNPTGSLLASCSDDG---T 382 (524)
T ss_pred eeccCCccceEEecCce-EeecCCC------ceEEEEEecCCCcc-eeeec-ccCceEEEEECCCCceEEEecCCC---e
Confidence 87777666789987765 4555543 45766654433211 12223 567899999999999999999999 9
Q ss_pred EEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcC
Q 000736 299 VKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSL 378 (1323)
Q Consensus 299 V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~ 378 (1323)
++||..++... -+.+..|.++...+.|+|++|- + +
T Consensus 383 lkiWs~~~~~~--~~~l~~Hskei~t~~wsp~g~v-----~--~------------------------------------ 417 (524)
T KOG0273|consen 383 LKIWSMGQSNS--VHDLQAHSKEIYTIKWSPTGPV-----T--S------------------------------------ 417 (524)
T ss_pred eEeeecCCCcc--hhhhhhhccceeeEeecCCCCc-----c--C------------------------------------
Confidence 99999875321 1234444445577888887763 0 0
Q ss_pred CCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCCCCccccccCCceeEeeeccccccCcEEEEEEecC
Q 000736 379 MPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGS 458 (1323)
Q Consensus 379 vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d 458 (1323)
.| .++ .+||+++.|++|++|+...+.++.++.+ |...|..++|+|+
T Consensus 418 --n~------------------~~~--~~l~sas~dstV~lwdv~~gv~i~~f~k------------H~~pVysvafS~~ 463 (524)
T KOG0273|consen 418 --NP------------------NMN--LMLASASFDSTVKLWDVESGVPIHTLMK------------HQEPVYSVAFSPN 463 (524)
T ss_pred --CC------------------cCC--ceEEEeecCCeEEEEEccCCceeEeecc------------CCCceEEEEecCC
Confidence 01 122 5799999999999999987766644433 3457999999999
Q ss_pred CeEEEEEecCCCCeeEEEEeecccCccccchhhhhhhhcccccccccccccccceeeeeecccCCcEEEEeeCCCCCceE
Q 000736 459 HLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSA 538 (1323)
Q Consensus 459 ~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~ 538 (1323)
|+++|+++-+ ..+.+|.... + .+-+...-.+-|..+++|. .++.+
T Consensus 464 g~ylAsGs~d--g~V~iws~~~-~-------------------------------~l~~s~~~~~~Ifel~Wn~-~G~kl 508 (524)
T KOG0273|consen 464 GRYLASGSLD--GCVHIWSTKT-G-------------------------------KLVKSYQGTGGIFELCWNA-AGDKL 508 (524)
T ss_pred CcEEEecCCC--CeeEeccccc-h-------------------------------heeEeecCCCeEEEEEEcC-CCCEE
Confidence 9999998765 5778887631 0 1122333456688899988 77888
Q ss_pred EEEeeCCeEEEE
Q 000736 539 FLQFHGGKISEY 550 (1323)
Q Consensus 539 ~~q~~dG~v~~~ 550 (1323)
.+.-.||.|...
T Consensus 509 ~~~~sd~~vcvl 520 (524)
T KOG0273|consen 509 GACASDGSVCVL 520 (524)
T ss_pred EEEecCCCceEE
Confidence 888888877654
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-21 Score=217.29 Aligned_cols=277 Identities=18% Similarity=0.266 Sum_probs=204.7
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeE-EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecC-ceeee
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDW-DLLYE 152 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~-d~~~e 152 (1323)
.+.|.++.|+|+++.|++++.+|.|.+|+..++.. .....|...|.++.|+|+++.|++++.||.|.+|+..- ..+..
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~ 88 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRT 88 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEE
Confidence 36899999999999999999999999999987643 34444577899999999999999999999999986432 12211
Q ss_pred eeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEcc
Q 000736 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP 232 (1323)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsP 232 (1323)
+..|...+.++.|+|++++++ +++ .++.|++||..+++.......+.+.+.+++|+|
T Consensus 89 ----------------~~~~~~~i~~~~~~~~~~~~~-~~~------~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 145 (289)
T cd00200 89 ----------------LTGHTSYVSSVAFSPDGRILS-SSS------RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP 145 (289)
T ss_pred ----------------EeccCCcEEEEEEcCCCCEEE-Eec------CCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC
Confidence 123445789999999999888 553 258999999977888888888888899999999
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEE
Q 000736 233 SGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYL 311 (1323)
Q Consensus 233 dG~lIAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wyl 311 (1323)
++.+|++++.+ ..|.+|+.+ +.....+. .+...|.+++|+|+++.|++++.++ .|++|+......
T Consensus 146 ~~~~l~~~~~~------~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~~~---~i~i~d~~~~~~-- 211 (289)
T cd00200 146 DGTFVASSSQD------GTIKLWDLRTGKCVATLT---GHTGEVNSVAFSPDGEKLLSSSSDG---TIKLWDLSTGKC-- 211 (289)
T ss_pred cCCEEEEEcCC------CcEEEEEccccccceeEe---cCccccceEEECCCcCEEEEecCCC---cEEEEECCCCce--
Confidence 99999998854 469999975 33333232 2245799999999999999998887 899999976432
Q ss_pred EeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeee-cC
Q 000736 312 KYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KF 390 (1323)
Q Consensus 312 kq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l-~~ 390 (1323)
...+..+......+.|+|++.. +.....+|.+. +|+.. .+..+ ..+ .|
T Consensus 212 ~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~i~----i~~~~----------~~~~~----------------~~~~~~ 260 (289)
T cd00200 212 LGTLRGHENGVNSVAFSPDGYL-LASGSEDGTIR----VWDLR----------TGECV----------------QTLSGH 260 (289)
T ss_pred ecchhhcCCceEEEEEcCCCcE-EEEEcCCCcEE----EEEcC----------CceeE----------------EEcccc
Confidence 2233222223377889988432 33333355543 23221 01111 112 35
Q ss_pred CCCEEEEEEecCCCCCEEEEEECCCcEEEEE
Q 000736 391 PTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1323)
Q Consensus 391 ~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~ 421 (1323)
...|.+++|+|++ +.|++++.||.|++|+
T Consensus 261 ~~~i~~~~~~~~~--~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 261 TNSVTSLAWSPDG--KRLASGSADGTIRIWD 289 (289)
T ss_pred CCcEEEEEECCCC--CEEEEecCCCeEEecC
Confidence 6789999999998 8999999999999996
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-21 Score=254.13 Aligned_cols=293 Identities=11% Similarity=0.055 Sum_probs=206.5
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCC----e-----EEEeceecCcEEEEEEcC-CCCeEEEEeCCccEEEEe
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGN----A-----TEVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILVMT 144 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~----~-----~e~vg~~~~~I~~~awSP-DG~~LA~~s~d~tV~l~t 144 (1323)
.+.|.+++|+|+|+.||+|+.||+|+||+..+. . ..... +...|.+++|+| ++.+||+++.||+|++|+
T Consensus 483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd 561 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWD 561 (793)
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEE
Confidence 578999999999999999999999999997531 1 11122 246799999987 488999999999999986
Q ss_pred ec-CceeeeeeecccCCCceeccCccccCCCCeEEEEEec-CCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCC
Q 000736 145 HD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA 222 (1323)
Q Consensus 145 ~~-~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWsp-DG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~ 222 (1323)
.. +..+. .+.+|.+.|.+++|+| ||.+|+ +++ .|++|+|||..+|....+...+
T Consensus 562 ~~~~~~~~----------------~~~~H~~~V~~l~~~p~~~~~L~-Sgs------~Dg~v~iWd~~~~~~~~~~~~~- 617 (793)
T PLN00181 562 VARSQLVT----------------EMKEHEKRVWSIDYSSADPTLLA-SGS------DDGSVKLWSINQGVSIGTIKTK- 617 (793)
T ss_pred CCCCeEEE----------------EecCCCCCEEEEEEcCCCCCEEE-EEc------CCCEEEEEECCCCcEEEEEecC-
Confidence 32 22221 1235677899999996 899999 554 3689999999889888877644
Q ss_pred CceeEEEE-ccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEE
Q 000736 223 FMGAVLEW-MPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKI 301 (1323)
Q Consensus 223 ~~v~slaw-sPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~L 301 (1323)
..+.+++| +|+|.+||+|+.| +.|.+|+..........+.. +...|..+.|+ |+..|++++.|+ +|+|
T Consensus 618 ~~v~~v~~~~~~g~~latgs~d------g~I~iwD~~~~~~~~~~~~~-h~~~V~~v~f~-~~~~lvs~s~D~---~iki 686 (793)
T PLN00181 618 ANICCVQFPSESGRSLAFGSAD------HKVYYYDLRNPKLPLCTMIG-HSKTVSYVRFV-DSSTLVSSSTDN---TLKL 686 (793)
T ss_pred CCeEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCCccceEecC-CCCCEEEEEEe-CCCEEEEEECCC---EEEE
Confidence 56789999 5679999999986 57999995322211122332 35679999997 788999999998 9999
Q ss_pred EEeeCC----eeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCc
Q 000736 302 CFFSNN----HWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLS 377 (1323)
Q Consensus 302 W~~~n~----~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~ 377 (1323)
|++... .|....++..+......+.|+|++.. |++++.||.+. +|+.... ..+..+.+...
T Consensus 687 Wd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~-lasgs~D~~v~----iw~~~~~----------~~~~s~~~~~~ 751 (793)
T PLN00181 687 WDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGY-IATGSETNEVF----VYHKAFP----------MPVLSYKFKTI 751 (793)
T ss_pred EeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCE-EEEEeCCCEEE----EEECCCC----------CceEEEecccC
Confidence 998632 23233344444333377899998764 77888788764 4443210 11111122111
Q ss_pred CCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEEC
Q 000736 378 LMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDL 422 (1323)
Q Consensus 378 ~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~ 422 (1323)
...+.+. .-.+...|.+|+|+|++ +.|++++.||+|++|++
T Consensus 752 ~~~~~~~--~~~~~~~V~~v~ws~~~--~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 752 DPVSGLE--VDDASQFISSVCWRGQS--STLVAANSTGNIKILEM 792 (793)
T ss_pred Ccccccc--cCCCCcEEEEEEEcCCC--CeEEEecCCCcEEEEec
Confidence 1000010 11245679999999999 89999999999999985
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.9e-23 Score=244.58 Aligned_cols=238 Identities=16% Similarity=0.184 Sum_probs=197.0
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC--------------------------------CeEE-EeceecCcEEE
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDG--------------------------------NATE-VVGRVEGGVRF 121 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~--------------------------------~~~e-~vg~~~~~I~~ 121 (1323)
...+++..|++|+..||.|..|-.|++|++.. +..+ ..| |.+.|..
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G-H~GPVyg 456 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG-HSGPVYG 456 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec-CCCceee
Confidence 35789999999999999999999999998752 1122 345 6999999
Q ss_pred EEEcCCCCeEEEEeCCccEEEEee-cCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCC
Q 000736 122 ISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKL 200 (1323)
Q Consensus 122 ~awSPDG~~LA~~s~d~tV~l~t~-~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~ 200 (1323)
.+||||-++|+++|+|++|++|+. .|..+-. ++||...|+.+.|+|-|.||| +++ .
T Consensus 457 ~sFsPd~rfLlScSED~svRLWsl~t~s~~V~----------------y~GH~~PVwdV~F~P~GyYFa-tas------~ 513 (707)
T KOG0263|consen 457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVI----------------YKGHLAPVWDVQFAPRGYYFA-TAS------H 513 (707)
T ss_pred eeecccccceeeccCCcceeeeecccceeEEE----------------ecCCCcceeeEEecCCceEEE-ecC------C
Confidence 999999999999999999999973 3433221 235667889999999999999 554 3
Q ss_pred CCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEeccCCCCcEEEEE
Q 000736 201 HKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLK 279 (1323)
Q Consensus 201 d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~la 279 (1323)
|++-|+|..+.-.....+.+|-+-|.+++|+|+++++|+||.| .+|++|+ .+|...+.|+ + |.+.|.+|+
T Consensus 514 D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD------~tVRlWDv~~G~~VRiF~--G-H~~~V~al~ 584 (707)
T KOG0263|consen 514 DQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSD------RTVRLWDVSTGNSVRIFT--G-HKGPVTALA 584 (707)
T ss_pred CceeeeeecccCCchhhhcccccccceEEECCcccccccCCCC------ceEEEEEcCCCcEEEEec--C-CCCceEEEE
Confidence 6899999998888888999999999999999999999999986 5699999 5677766663 2 467899999
Q ss_pred EccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCe
Q 000736 280 WNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENS 359 (1323)
Q Consensus 280 WSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~ 359 (1323)
|||+|.+||+|+.|+ .|+|||+.+..- + ++
T Consensus 585 ~Sp~Gr~LaSg~ed~---~I~iWDl~~~~~-------------------------v------~~---------------- 614 (707)
T KOG0263|consen 585 FSPCGRYLASGDEDG---LIKIWDLANGSL-------------------------V------KQ---------------- 614 (707)
T ss_pred EcCCCceEeecccCC---cEEEEEcCCCcc-------------------------h------hh----------------
Confidence 999999999999999 999999876310 0 00
Q ss_pred eEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCC
Q 000736 360 TALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1323)
Q Consensus 360 ~v~viDg~~l~lt~l~~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~ 424 (1323)
-.+|.+.|.+|+||.|| +.||+++.|++|++||+..
T Consensus 615 ---------------------------l~~Ht~ti~SlsFS~dg--~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 615 ---------------------------LKGHTGTIYSLSFSRDG--NVLASGGADNSVRLWDLTK 650 (707)
T ss_pred ---------------------------hhcccCceeEEEEecCC--CEEEecCCCCeEEEEEchh
Confidence 02356789999999999 9999999999999999864
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-21 Score=231.24 Aligned_cols=404 Identities=13% Similarity=0.072 Sum_probs=281.5
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCC--EEEEEeCCCcE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKE--ALIVGTSSGLL 99 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~--~La~as~dG~I 99 (1323)
++..+++|+.+..|..++.|+.+..||. ..+.. +.. +++| ++.|.++.|.|+-. .|++|..||+|
T Consensus 107 Pvi~ma~~~~g~LlAtggaD~~v~VWdi--~~~~~---th~----fkG~----gGvVssl~F~~~~~~~lL~sg~~D~~v 173 (775)
T KOG0319|consen 107 PVITMAFDPTGTLLATGGADGRVKVWDI--KNGYC---THS----FKGH----GGVVSSLLFHPHWNRWLLASGATDGTV 173 (775)
T ss_pred CeEEEEEcCCCceEEeccccceEEEEEe--eCCEE---EEE----ecCC----CceEEEEEeCCccchhheeecCCCceE
Confidence 6788999999999999999999999999 34332 232 6766 57899999999875 58999999999
Q ss_pred EEEeCCCCeEE--EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEee-cCceeee----------eeecccCCC--ce-
Q 000736 100 LLHSVDGNATE--VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYE----------NPLEELAEG--FD- 163 (1323)
Q Consensus 100 ~lw~~~~~~~e--~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~-~~d~~~e----------~~l~~~~~~--~~- 163 (1323)
++||..++... +.-.|.+.|++++|++|+..+.+++.|..+.+|+- ....... ..++..... ..
T Consensus 174 ~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~ 253 (775)
T KOG0319|consen 174 RVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYI 253 (775)
T ss_pred EEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEE
Confidence 99999864432 34457889999999999999999999999999852 1111000 011110000 00
Q ss_pred ec----------------------------------------------c--------------CccccCCCCeEEEEE-e
Q 000736 164 VH----------------------------------------------E--------------PELSSSFSFKSPISW-R 182 (1323)
Q Consensus 164 Vs----------------------------------------------~--------------tqf~~~~~~i~~isW-s 182 (1323)
++ + .|+-|..+.|..+.| -
T Consensus 254 ~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG 333 (775)
T KOG0319|consen 254 ITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLG 333 (775)
T ss_pred EEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecC
Confidence 00 0 011155567777765 4
Q ss_pred cCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeE
Q 000736 183 GDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLER 262 (1323)
Q Consensus 183 pDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~ 262 (1323)
|+-+++| +++- ...+|+|+. .|--.+...+|+..|.+++-.-+|-+|||++.|+ +|+||..|....
T Consensus 334 ~e~~~la-VATN------s~~lr~y~~-~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~------svilWr~~~~~~ 399 (775)
T KOG0319|consen 334 PEESHLA-VATN------SPELRLYTL-PTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDK------SVILWRLNNNCS 399 (775)
T ss_pred CccceEE-EEeC------CCceEEEec-CCCceEEEeCchhheeeeeecccCcEEEEecCCc------eEEEEEecCCcc
Confidence 5667888 7753 368999988 4444447889999999999666789999999974 699996532211
Q ss_pred EEEEec--cCCCCcEEEEEEccCC-CeeEEEEccCCCCeEEEEEeeC-------CeeEEEeEEEEecCCcEEEEEccCCC
Q 000736 263 SSFDIN--EQIDSTVELLKWNCMS-DLLAAVVRFEEYDSVKICFFSN-------NHWYLKYEIRYLRRDGIRFMWHPTKP 332 (1323)
Q Consensus 263 ~~f~l~--~~~~~~V~~laWSpDg-~~LA~~~~d~~~~~V~LW~~~n-------~~wylkq~l~~~~~~~~~v~Wsp~~~ 332 (1323)
....+. ..+++.|..|+.|-.| ..|++++.|. ++|+|+... +..........|.++..++.-+|+..
T Consensus 400 ~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~---tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk 476 (775)
T KOG0319|consen 400 KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDC---TLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDK 476 (775)
T ss_pred hhhhhhhhcccccccceeeecccCccEEEEecCCc---eEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCc
Confidence 111111 2346789999997766 4899999999 999999864 11000011112333445566666553
Q ss_pred cEEEEEecCCcEE---------------EEEEEEeeee--CCCeeEEEEeCCEEEEeecCCcCCCCCceeeeec-CCCCE
Q 000736 333 LQLICWTLDGQIT---------------TYNFIWTTAV--MENSTALVIDGSKILVTPLSLSLMPPPMYLFSLK-FPTAV 394 (1323)
Q Consensus 333 ~~L~~~~~~g~~~---------------~~~~~~~~~~--~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~-~~~~V 394 (1323)
. ++.+++|-... +..-+|++.+ .|+-++....+++|++|.+..- -|.++++ |.+.|
T Consensus 477 L-iAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f-----SClkT~eGH~~aV 550 (775)
T KOG0319|consen 477 L-IATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF-----SCLKTFEGHTSAV 550 (775)
T ss_pred e-EEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc-----eeeeeecCcccee
Confidence 2 33333322211 2345788884 4556666778889999988653 4778886 99999
Q ss_pred EEEEEecCCCCCEEEEEECCCcEEEEECCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCeeE
Q 000736 395 TEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNY 474 (1323)
Q Consensus 395 ~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~ 474 (1323)
..++|-.+| +.|.++++||-|+||+..+..|..++.+ |.+.|+.++-++.+.++++++.+ ..+.
T Consensus 551 lra~F~~~~--~qliS~~adGliKlWnikt~eC~~tlD~------------H~DrvWaL~~~~~~~~~~tgg~D--g~i~ 614 (775)
T KOG0319|consen 551 LRASFIRNG--KQLISAGADGLIKLWNIKTNECEMTLDA------------HNDRVWALSVSPLLDMFVTGGGD--GRII 614 (775)
T ss_pred EeeeeeeCC--cEEEeccCCCcEEEEeccchhhhhhhhh------------ccceeEEEeecCccceeEecCCC--eEEE
Confidence 999999999 8999999999999999999888755544 56799999999999888776654 4666
Q ss_pred EEE
Q 000736 475 FRG 477 (1323)
Q Consensus 475 ~~~ 477 (1323)
+|.
T Consensus 615 ~wk 617 (775)
T KOG0319|consen 615 FWK 617 (775)
T ss_pred Eee
Confidence 663
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=208.43 Aligned_cols=277 Identities=13% Similarity=0.129 Sum_probs=206.6
Q ss_pred ceeEEeeecC-CCEEEEEeCCCcEEEEecccccccccceee-ccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcE
Q 000736 22 ILQFSALDIE-QNRLFFASSANNIYSAQLSSFQNERASIKT-AISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLL 99 (1323)
Q Consensus 22 ~~~~~~~d~~-~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I 99 (1323)
.+-.+||.+- |..|++|++|..|..|+.+ .+.. |... .|+.+ | .-.|.+|+|+|.|+.||+||-|+++
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~--~~~s-~~ck~vld~~---h----krsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTS--SGDS-WTCKTVLDDG---H----KRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecC--CCCc-EEEEEecccc---c----hheeeeeeecCCCcEEEEeeccceE
Confidence 7899999998 7789999999999999994 2222 3322 22222 2 3579999999999999999999999
Q ss_pred EEEeCCCCeEEE---eceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCe
Q 000736 100 LLHSVDGNATEV---VGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1323)
Q Consensus 100 ~lw~~~~~~~e~---vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i 176 (1323)
.||...++.+++ +..|+..|.|++||++|.+||++|.|+.|-+|..+-+--.+... -+++|...|
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~a------------VL~~HtqDV 153 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIA------------VLQEHTQDV 153 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEe------------eeccccccc
Confidence 999988877763 34578999999999999999999999999998543111111110 112455567
Q ss_pred EEEEEecCCcEEEEeeccccccCCCCEEEEEECCCC---ceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEE
Q 000736 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG---TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV 253 (1323)
Q Consensus 177 ~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G---~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~ 253 (1323)
-.+.|.|--..|+ ++++ |.+||+|..+.+ ++..++.+|.+.|.+++|.|.|+.++++++|. +|+
T Consensus 154 K~V~WHPt~dlL~-S~SY------DnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~------tv~ 220 (312)
T KOG0645|consen 154 KHVIWHPTEDLLF-SCSY------DNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDG------TVS 220 (312)
T ss_pred cEEEEcCCcceeE-Eecc------CCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCc------ceE
Confidence 8899999888999 5555 489999998623 57888999999999999999999999999974 599
Q ss_pred EEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeC----CeeEE--EeEEEEecCCcEEEEE
Q 000736 254 FYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN----NHWYL--KYEIRYLRRDGIRFMW 327 (1323)
Q Consensus 254 ~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n----~~wyl--kq~l~~~~~~~~~v~W 327 (1323)
+|-.- ..++..+...++.++|. ...||+++.|. .|+|+..+. ..|-+ +++ ..|..+..++.|
T Consensus 221 Iw~~~------~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~---~i~lf~~s~~~d~p~~~l~~~~~-~aHe~dVNsV~w 288 (312)
T KOG0645|consen 221 IWRLY------TDLSGMHSRALYDVPWD--NGVIASGGGDD---AIRLFKESDSPDEPSWNLLAKKE-GAHEVDVNSVQW 288 (312)
T ss_pred eeeec------cCcchhcccceEeeeec--ccceEeccCCC---EEEEEEecCCCCCchHHHHHhhh-cccccccceEEE
Confidence 99631 12333345679999999 45799999888 899998763 22211 111 123335589999
Q ss_pred ccCCCcEEEEEecCCcEE
Q 000736 328 HPTKPLQLICWTLDGQIT 345 (1323)
Q Consensus 328 sp~~~~~L~~~~~~g~~~ 345 (1323)
.|..+.+|..+..||.+.
T Consensus 289 ~p~~~~~L~s~~DDG~v~ 306 (312)
T KOG0645|consen 289 NPKVSNRLASGGDDGIVN 306 (312)
T ss_pred cCCCCCceeecCCCceEE
Confidence 997677787777777665
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.8e-22 Score=241.58 Aligned_cols=287 Identities=15% Similarity=0.138 Sum_probs=209.5
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe--E-EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceee
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA--T-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY 151 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~--~-e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~ 151 (1323)
...|+++.|+|||+.|+.++.+++|++|+..+.. + .....|..+|..++|||||+.|++++.|++|++|+.. ..
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~---~~ 235 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK---DD 235 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeecc---CC
Confidence 3689999999999999999999999999996654 3 2334568999999999999999999999999988641 11
Q ss_pred eeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEc
Q 000736 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM 231 (1323)
Q Consensus 152 e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slaws 231 (1323)
...+. .+++|...+.+++|+|+|++++ +++ .|++|||||..+|++..++.+|.+.+.+++|+
T Consensus 236 ~~~~~-----------~l~gH~~~v~~~~f~p~g~~i~-Sgs------~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~ 297 (456)
T KOG0266|consen 236 GRNLK-----------TLKGHSTYVTSVAFSPDGNLLV-SGS------DDGTVRIWDVRTGECVRKLKGHSDGISGLAFS 297 (456)
T ss_pred CeEEE-----------EecCCCCceEEEEecCCCCEEE-Eec------CCCcEEEEeccCCeEEEeeeccCCceEEEEEC
Confidence 12222 2337778899999999999888 554 46899999998999999999999999999999
Q ss_pred cCCCeEEEEecCCCCCCCCeEEEEeCCCeeEE-EEEeccCCCC-cEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCee
Q 000736 232 PSGANIAAVYDRKSENKCPSIVFYERNGLERS-SFDINEQIDS-TVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1323)
Q Consensus 232 PdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~-~f~l~~~~~~-~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~w 309 (1323)
|+|++|++++.| +.|++||..+.... ...+...... .+..+.|||+|++|++++.|+ ++++|++...+-
T Consensus 298 ~d~~~l~s~s~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~---~~~~w~l~~~~~ 368 (456)
T KOG0266|consen 298 PDGNLLVSASYD------GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDR---TLKLWDLRSGKS 368 (456)
T ss_pred CCCCEEEEcCCC------ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCC---eEEEEEccCCcc
Confidence 999999999875 56999997544321 0112222222 689999999999999999998 899999987542
Q ss_pred EEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeee-
Q 000736 310 YLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL- 388 (1323)
Q Consensus 310 ylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l- 388 (1323)
..++..+.... ...+++.. . +.+..++.-..+..|.+|++...... ..+
T Consensus 369 --~~~~~~~~~~~-~~~~~~~~-------~---------------~~~~~i~sg~~d~~v~~~~~~s~~~~-----~~l~ 418 (456)
T KOG0266|consen 369 --VGTYTGHSNLV-RCIFSPTL-------S---------------TGGKLIYSGSEDGSVYVWDSSSGGIL-----QRLE 418 (456)
T ss_pred --eeeecccCCcc-eeEecccc-------c---------------CCCCeEEEEeCCceEEEEeCCccchh-----hhhc
Confidence 22333322211 11111110 1 11222233334456677766532221 122
Q ss_pred cC-CCCEEEEEEecCCCCCEEEEEE--CCCcEEEEECC
Q 000736 389 KF-PTAVTEMAFYSKSSKNCLAAIL--SDGCLCVVDLP 423 (1323)
Q Consensus 389 ~~-~~~V~~VaFSpdg~~~~LAs~s--~Dgti~lw~~~ 423 (1323)
.| ...|..++|+|.. +.+|+.+ .|+.+++|..+
T Consensus 419 ~h~~~~~~~~~~~~~~--~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 419 GHSKAAVSDLSSHPTE--NLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCCCCceeccccCCCc--CeeeecCcCCCceEEEecCC
Confidence 35 6788999999999 8999998 78999999864
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.5e-22 Score=218.76 Aligned_cols=292 Identities=15% Similarity=0.131 Sum_probs=216.8
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeee
Q 000736 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1323)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~ 154 (1323)
..|+.+-|+|+--..+++++|++|++||..+++++ .+-+|.++|..++|+.-|++||+++.|-.+++|+.+ ... .+
T Consensus 109 ~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~--~~~-~c 185 (406)
T KOG0295|consen 109 SSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFD--TFF-RC 185 (406)
T ss_pred cceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHH--HHH-HH
Confidence 57999999999999999999999999999999886 344468889999999999999999999889888532 111 11
Q ss_pred ecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCC
Q 000736 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG 234 (1323)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG 234 (1323)
+... ++|+..+.++.|.|-|.+++ +.+ .|++|+.|+..+|.+..++.+|..++..+.-+-||
T Consensus 186 ~ks~-----------~gh~h~vS~V~f~P~gd~il-S~s------rD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DG 247 (406)
T KOG0295|consen 186 IKSL-----------IGHEHGVSSVFFLPLGDHIL-SCS------RDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDG 247 (406)
T ss_pred HHHh-----------cCcccceeeEEEEecCCeee-ecc------cccceeEEecccceeEEeccCchHhEEEEEecCCe
Confidence 1111 26677899999999999999 443 36899999999999999999999999999999999
Q ss_pred CeEEEEecCCCCCCCCeEEEEeCCCe-eEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEe
Q 000736 235 ANIAAVYDRKSENKCPSIVFYERNGL-ERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKY 313 (1323)
Q Consensus 235 ~lIAs~s~d~~~~~~~~V~~~e~nGl-~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq 313 (1323)
.+|||++.| ++|++|-.+.. -.. .++. ++..|..++|-|...+=. ..+..
T Consensus 248 ti~As~s~d------qtl~vW~~~t~~~k~--~lR~-hEh~vEci~wap~~~~~~--i~~at------------------ 298 (406)
T KOG0295|consen 248 TIIASCSND------QTLRVWVVATKQCKA--ELRE-HEHPVECIAWAPESSYPS--ISEAT------------------ 298 (406)
T ss_pred eEEEecCCC------ceEEEEEeccchhhh--hhhc-cccceEEEEecccccCcc--hhhcc------------------
Confidence 999999985 56999974321 011 2232 255799999999775211 11110
Q ss_pred EEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeee-cCCC
Q 000736 314 EIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPT 392 (1323)
Q Consensus 314 ~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l-~~~~ 392 (1323)
.+ .++..-+..++. ++++++|+ |+.|||+.+| .|.+
T Consensus 299 ------~~-------~~~~~~l~s~Sr-------------------------DktIk~wd-----v~tg~cL~tL~ghdn 335 (406)
T KOG0295|consen 299 ------GS-------TNGGQVLGSGSR-------------------------DKTIKIWD-----VSTGMCLFTLVGHDN 335 (406)
T ss_pred ------CC-------CCCccEEEeecc-------------------------cceEEEEe-----ccCCeEEEEEecccc
Confidence 00 001111222222 23556554 4668999998 5999
Q ss_pred CEEEEEEecCCCCCEEEEEECCCcEEEEECCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCe
Q 000736 393 AVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHS 472 (1323)
Q Consensus 393 ~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~ 472 (1323)
+|.+++|+|.| ++|++...|+++++|++.+..|..+++.++ .-+..+.|..+--++.+|+-+ .+
T Consensus 336 wVr~~af~p~G--kyi~ScaDDktlrvwdl~~~~cmk~~~ah~------------hfvt~lDfh~~~p~VvTGsVd--qt 399 (406)
T KOG0295|consen 336 WVRGVAFSPGG--KYILSCADDKTLRVWDLKNLQCMKTLEAHE------------HFVTSLDFHKTAPYVVTGSVD--QT 399 (406)
T ss_pred eeeeeEEcCCC--eEEEEEecCCcEEEEEeccceeeeccCCCc------------ceeEEEecCCCCceEEecccc--ce
Confidence 99999999999 999999999999999999988887766443 246666776666677766644 45
Q ss_pred eEEE
Q 000736 473 NYFR 476 (1323)
Q Consensus 473 ~~~~ 476 (1323)
+.+|
T Consensus 400 ~Kvw 403 (406)
T KOG0295|consen 400 VKVW 403 (406)
T ss_pred eeee
Confidence 5554
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-20 Score=208.09 Aligned_cols=273 Identities=15% Similarity=0.157 Sum_probs=207.3
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1323)
.+.+++|+++++.|++++.++.|..|+. .+++. ... +..+ ...+..+.|+|+++.|++++.+|.|.+
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~--~~~~~---~~~----~~~~----~~~i~~~~~~~~~~~l~~~~~~~~i~i 77 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDL--ETGEL---LRT----LKGH----TGPVRDVAASADGTYLASGSSDKTIRL 77 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEe--eCCCc---EEE----EecC----CcceeEEEECCCCCEEEEEcCCCeEEE
Confidence 7899999999999999999999999999 34332 111 2222 346789999999999999999999999
Q ss_pred EeCCCC-eEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeec-CceeeeeeecccCCCceeccCccccCCCCeEEE
Q 000736 102 HSVDGN-ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1323)
Q Consensus 102 w~~~~~-~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~-~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~i 179 (1323)
|+..++ .+.....+...|.+++|+|+++++++++.++.|.+|+.. ........ .|...+.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----------------~~~~~i~~~ 141 (289)
T cd00200 78 WDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR----------------GHTDWVNSV 141 (289)
T ss_pred EEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec----------------cCCCcEEEE
Confidence 999874 333444557789999999999999988889999998643 33322221 344678999
Q ss_pred EEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCC
Q 000736 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNG 259 (1323)
Q Consensus 180 sWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nG 259 (1323)
+|+|++++++ +++ .++.|++||..+++.......+.+.+.+++|+|+|+.|++++.+ ..|.+|+...
T Consensus 142 ~~~~~~~~l~-~~~------~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~------~~i~i~d~~~ 208 (289)
T cd00200 142 AFSPDGTFVA-SSS------QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD------GTIKLWDLST 208 (289)
T ss_pred EEcCcCCEEE-EEc------CCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCC------CcEEEEECCC
Confidence 9999999988 553 25899999997888888888888889999999999989888864 4699999653
Q ss_pred -eeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEE
Q 000736 260 -LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICW 338 (1323)
Q Consensus 260 -l~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~ 338 (1323)
.....+ . .+...|..++|+|++.++++++.++ .|++|+..+.. ....+..+......+.|+|++.. |.++
T Consensus 209 ~~~~~~~--~-~~~~~i~~~~~~~~~~~~~~~~~~~---~i~i~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~-l~~~ 279 (289)
T cd00200 209 GKCLGTL--R-GHENGVNSVAFSPDGYLLASGSEDG---TIRVWDLRTGE--CVQTLSGHTNSVTSLAWSPDGKR-LASG 279 (289)
T ss_pred Cceecch--h-hcCCceEEEEEcCCCcEEEEEcCCC---cEEEEEcCCce--eEEEccccCCcEEEEEECCCCCE-EEEe
Confidence 222222 1 2345799999999999999988777 89999997643 23344433333488999998654 6666
Q ss_pred ecCCcEE
Q 000736 339 TLDGQIT 345 (1323)
Q Consensus 339 ~~~g~~~ 345 (1323)
+.+|.+.
T Consensus 280 ~~d~~i~ 286 (289)
T cd00200 280 SADGTIR 286 (289)
T ss_pred cCCCeEE
Confidence 6677654
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.6e-21 Score=233.57 Aligned_cols=293 Identities=15% Similarity=0.156 Sum_probs=210.8
Q ss_pred EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEE
Q 000736 111 VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFAT 190 (1323)
Q Consensus 111 ~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAt 190 (1323)
..+++...|.++.|||||+.||+++.++++++|.... .....++.. .+|...|..++|+|||++++
T Consensus 154 ~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~--~~~~~~~~l-----------~~h~~~v~~~~fs~d~~~l~- 219 (456)
T KOG0266|consen 154 LAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEG--IKSNLLREL-----------SGHTRGVSDVAFSPDGSYLL- 219 (456)
T ss_pred ecccccCceEEEEEcCCCCeEEEccCCCcEEEeeccc--ccchhhccc-----------cccccceeeeEECCCCcEEE-
Confidence 3455578899999999999999999999999985411 110011111 25677899999999999999
Q ss_pred eeccccccCCCCEEEEEEC-CCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEec
Q 000736 191 LSEFCNSSKLHKRLKVWER-DSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDIN 268 (1323)
Q Consensus 191 vss~d~~~~~d~~IrVWd~-~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~ 268 (1323)
+++ .|.+|||||. ..|....++.+|...|.+++|+|+|++|+||+.|. +|++|+.. |...+. +.
T Consensus 220 s~s------~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~------tvriWd~~~~~~~~~--l~ 285 (456)
T KOG0266|consen 220 SGS------DDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDG------TVRIWDVRTGECVRK--LK 285 (456)
T ss_pred Eec------CCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCC------cEEEEeccCCeEEEe--ee
Confidence 554 3689999999 66789999999999999999999999999999974 69999965 444332 33
Q ss_pred cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCC-c-EEEEEccCCCcEEEEEecCCcEEE
Q 000736 269 EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRD-G-IRFMWHPTKPLQLICWTLDGQITT 346 (1323)
Q Consensus 269 ~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~-~-~~v~Wsp~~~~~L~~~~~~g~~~~ 346 (1323)
. +...|..++|++||.+|++++.|+ .|++||+.+++-.+..++...... . ..+.|+|++.. +.+.+
T Consensus 286 ~-hs~~is~~~f~~d~~~l~s~s~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~-ll~~~------- 353 (456)
T KOG0266|consen 286 G-HSDGISGLAFSPDGNLLVSASYDG---TIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKY-LLSAS------- 353 (456)
T ss_pred c-cCCceEEEEECCCCCEEEEcCCCc---cEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcE-EEEec-------
Confidence 3 356899999999999999999999 999999988652112334333333 3 67778877654 33333
Q ss_pred EEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCC---CEEEEEEecCCCCCEEEEEECCCcEEEEECC
Q 000736 347 YNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPT---AVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1323)
Q Consensus 347 ~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~~~~---~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~ 423 (1323)
+++.+++|+++....+-... .|.. .+.+..++++| ..+.+++.|+.|.+|+..
T Consensus 354 ------------------~d~~~~~w~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 354 ------------------LDRTLKLWDLRSGKSVGTYT----GHSNLVRCIFSPTLSTGG--KLIYSGSEDGSVYVWDSS 409 (456)
T ss_pred ------------------CCCeEEEEEccCCcceeeec----ccCCcceeEecccccCCC--CeEEEEeCCceEEEEeCC
Confidence 44455666655432211100 1222 34455567788 899999999999999998
Q ss_pred CCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCeeEEEEe
Q 000736 424 APDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1323)
Q Consensus 424 ~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1323)
+......+.|+. ...+..+.|.+...++++.+......+.+|..
T Consensus 410 s~~~~~~l~~h~-----------~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 410 SGGILQRLEGHS-----------KAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred ccchhhhhcCCC-----------CCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 765554555542 34678889999999999887655566777754
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-21 Score=215.03 Aligned_cols=284 Identities=13% Similarity=0.070 Sum_probs=199.3
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC-CeEE----EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCce
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDG-NATE----VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDL 149 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~-~~~e----~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~ 149 (1323)
.+.|+-+.||++|+.||+||.|.|..+|.+.. ..++ ++| |..+|..++||||.++|++++.|..+.+| |+
T Consensus 224 tdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvg-h~~~V~yi~wSPDdryLlaCg~~e~~~lw----Dv 298 (519)
T KOG0293|consen 224 TDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVG-HSQPVSYIMWSPDDRYLLACGFDEVLSLW----DV 298 (519)
T ss_pred CCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeec-ccCceEEEEECCCCCeEEecCchHheeec----cC
Confidence 57899999999999999999999999998753 2322 556 57899999999999999999999888775 44
Q ss_pred eeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCC-CceeEE
Q 000736 150 LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA-FMGAVL 228 (1323)
Q Consensus 150 ~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~-~~v~sl 228 (1323)
-++...+.... ++...+.+.+|.|||..|+ +|+ .||+|..||. +|......++.. ..+.++
T Consensus 299 ~tgd~~~~y~~----------~~~~S~~sc~W~pDg~~~V-~Gs------~dr~i~~wdl-Dgn~~~~W~gvr~~~v~dl 360 (519)
T KOG0293|consen 299 DTGDLRHLYPS----------GLGFSVSSCAWCPDGFRFV-TGS------PDRTIIMWDL-DGNILGNWEGVRDPKVHDL 360 (519)
T ss_pred Ccchhhhhccc----------CcCCCcceeEEccCCceeE-ecC------CCCcEEEecC-CcchhhcccccccceeEEE
Confidence 44443333221 2235678999999999999 775 3699999999 999888877654 458999
Q ss_pred EEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCe
Q 000736 229 EWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1323)
Q Consensus 229 awsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~ 308 (1323)
+.+|||+.+.+...| ..|+++++....... .+ ..+..|.+++.|.||++..+-..+. .|++||...
T Consensus 361 ait~Dgk~vl~v~~d------~~i~l~~~e~~~dr~-li--se~~~its~~iS~d~k~~LvnL~~q---ei~LWDl~e-- 426 (519)
T KOG0293|consen 361 AITYDGKYVLLVTVD------KKIRLYNREARVDRG-LI--SEEQPITSFSISKDGKLALVNLQDQ---EIHLWDLEE-- 426 (519)
T ss_pred EEcCCCcEEEEEecc------cceeeechhhhhhhc-cc--cccCceeEEEEcCCCcEEEEEcccC---eeEEeecch--
Confidence 999999988777765 458888764322111 11 1245799999999999999988888 899999984
Q ss_pred eEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeee
Q 000736 309 WYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL 388 (1323)
Q Consensus 309 wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l 388 (1323)
|.+.+...++... ...+....+++ ++.-++.-..+.+|++|...... |.. +|
T Consensus 427 ~~lv~kY~Ghkq~----------~fiIrSCFgg~-------------~~~fiaSGSED~kvyIWhr~sgk---ll~--~L 478 (519)
T KOG0293|consen 427 NKLVRKYFGHKQG----------HFIIRSCFGGG-------------NDKFIASGSEDSKVYIWHRISGK---LLA--VL 478 (519)
T ss_pred hhHHHHhhccccc----------ceEEEeccCCC-------------CcceEEecCCCceEEEEEccCCc---eeE--ee
Confidence 3222222121111 11111111100 11112222345566677654332 222 34
Q ss_pred -cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCC
Q 000736 389 -KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1323)
Q Consensus 389 -~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~ 424 (1323)
+|...|++|+|+|... .++|+++.||||+||....
T Consensus 479 sGHs~~vNcVswNP~~p-~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 479 SGHSKTVNCVSWNPADP-EMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cCCcceeeEEecCCCCH-HHhhccCCCCeEEEecCCc
Confidence 4788999999999874 7899999999999998763
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.4e-20 Score=198.18 Aligned_cols=263 Identities=13% Similarity=0.068 Sum_probs=205.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1323)
.+.++-|-+|+..|.++|.|+.++.||. .+.+. ++. + -+|...|...+|+|.|+++|.|+-|....+
T Consensus 57 Ki~~~~ws~Dsr~ivSaSqDGklIvWDs--~TtnK---~ha-------i-pl~s~WVMtCA~sPSg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 57 KIYAMDWSTDSRRIVSASQDGKLIVWDS--FTTNK---VHA-------I-PLPSSWVMTCAYSPSGNFVACGGLDNKCSI 123 (343)
T ss_pred ceeeeEecCCcCeEEeeccCCeEEEEEc--ccccc---eeE-------E-ecCceeEEEEEECCCCCeEEecCcCceeEE
Confidence 7889999999999999999999999999 55442 221 1 134679999999999999999999999999
Q ss_pred EeCCCC------eE-EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCC
Q 000736 102 HSVDGN------AT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1323)
Q Consensus 102 w~~~~~------~~-e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~ 174 (1323)
|++.+. .. ..+..|.+.+.|..|-+|+ .|+++|+|.|.-+|+ .-+++... .|++|.+
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWD----ie~g~~~~-----------~f~GH~g 187 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWD----IETGQQTQ-----------VFHGHTG 187 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEE----cccceEEE-----------EecCCcc
Confidence 999753 22 2455579999999999985 577899999998864 33333322 3668999
Q ss_pred CeEEEEEec-CCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEE
Q 000736 175 FKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV 253 (1323)
Q Consensus 175 ~i~~isWsp-DG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~ 253 (1323)
.|.+++.+| |++.|+ +++- |+..+|||.++|.+..++++|+.-|++|.|-|+|.-+|+|++|. +.+
T Consensus 188 DV~slsl~p~~~ntFv-Sg~c------D~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~------tcR 254 (343)
T KOG0286|consen 188 DVMSLSLSPSDGNTFV-SGGC------DKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDA------TCR 254 (343)
T ss_pred cEEEEecCCCCCCeEE-eccc------ccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCc------eeE
Confidence 999999999 999999 5543 58999999999999999999999999999999999999999975 599
Q ss_pred EEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCC
Q 000736 254 FYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKP 332 (1323)
Q Consensus 254 ~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~ 332 (1323)
+||. .+.....|.- ......|.+++||-.|++|-.+..|. ++.+||+-...- .-.+..|.+...++.-+|||-
T Consensus 255 lyDlRaD~~~a~ys~-~~~~~gitSv~FS~SGRlLfagy~d~---~c~vWDtlk~e~--vg~L~GHeNRvScl~~s~DG~ 328 (343)
T KOG0286|consen 255 LYDLRADQELAVYSH-DSIICGITSVAFSKSGRLLFAGYDDF---TCNVWDTLKGER--VGVLAGHENRVSCLGVSPDGM 328 (343)
T ss_pred EEeecCCcEEeeecc-CcccCCceeEEEcccccEEEeeecCC---ceeEeeccccce--EEEeeccCCeeEEEEECCCCc
Confidence 9983 3322222321 11235799999999999999999888 899999633211 123344433337777888874
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.7e-18 Score=202.65 Aligned_cols=349 Identities=11% Similarity=0.082 Sum_probs=244.9
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1323)
.+.+++|-|-+--|.+.--++.|-.||. .++.. +.. +.+| .+.|.+|+|+|++..+++|++|-.|++
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlWDY--RM~tl---i~r----FdeH----dGpVRgv~FH~~qplFVSGGDDykIkV 77 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLWDY--RMGTL---IDR----FDEH----DGPVRGVDFHPTQPLFVSGGDDYKIKV 77 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeeehh--hhhhH---Hhh----hhcc----CCccceeeecCCCCeEEecCCccEEEE
Confidence 5677888888888887777888999999 56543 221 3444 579999999999999999999999999
Q ss_pred EeCCCCeEE--EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEE
Q 000736 102 HSVDGNATE--VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1323)
Q Consensus 102 w~~~~~~~e--~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~i 179 (1323)
||..+.++- ..| |.+.|+.+.|.|.-=++.++|.|+||++|+ |..-+.+.. .. ||...|.+.
T Consensus 78 WnYk~rrclftL~G-HlDYVRt~~FHheyPWIlSASDDQTIrIWN--wqsr~~iav--lt-----------GHnHYVMcA 141 (1202)
T KOG0292|consen 78 WNYKTRRCLFTLLG-HLDYVRTVFFHHEYPWILSASDDQTIRIWN--WQSRKCIAV--LT-----------GHNHYVMCA 141 (1202)
T ss_pred Eecccceehhhhcc-ccceeEEeeccCCCceEEEccCCCeEEEEe--ccCCceEEE--Ee-----------cCceEEEee
Confidence 999998764 566 589999999999999999999999999986 443333322 21 667788999
Q ss_pred EEecCCcEEEEeeccccccCCCCEEEEEECCCCc------------------------------eeeeeccCCCceeEEE
Q 000736 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT------------------------------LQASSELKAFMGAVLE 229 (1323)
Q Consensus 180 sWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~------------------------------l~~t~e~~~~~v~sla 229 (1323)
.|.|.-..++ ++|. |.+|||||. .|- .-..+|+|+..|+-+|
T Consensus 142 qFhptEDlIV-SaSL------DQTVRVWDi-sGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaA 213 (1202)
T KOG0292|consen 142 QFHPTEDLIV-SASL------DQTVRVWDI-SGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAA 213 (1202)
T ss_pred ccCCccceEE-Eecc------cceEEEEee-cchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEE
Confidence 9999888888 6766 479999997 330 1224678888899999
Q ss_pred EccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEE-EeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCe
Q 000736 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSF-DINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1323)
Q Consensus 230 wsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f-~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~ 308 (1323)
|+|.--+|+||++| ..|++|.-|-.+--+. +.++| .+.|.++-|.|.-+++.+.++|+ +|++||++...
T Consensus 214 fhpTlpliVSG~DD------RqVKlWrmnetKaWEvDtcrgH-~nnVssvlfhp~q~lIlSnsEDk---sirVwDm~kRt 283 (1202)
T KOG0292|consen 214 FHPTLPLIVSGADD------RQVKLWRMNETKAWEVDTCRGH-YNNVSSVLFHPHQDLILSNSEDK---SIRVWDMTKRT 283 (1202)
T ss_pred ecCCcceEEecCCc------ceeeEEEeccccceeehhhhcc-cCCcceEEecCccceeEecCCCc---cEEEEeccccc
Confidence 99999999999996 4799998775332221 12233 56899999999999999999999 99999997532
Q ss_pred eEEEeEEEEec-CCc-EEEEEccCCCcEEEEEecCCcEEEEEEEEe---eeeCCCeeEEEEeCCEEEEeecCCcCCCCCc
Q 000736 309 WYLKYEIRYLR-RDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWT---TAVMENSTALVIDGSKILVTPLSLSLMPPPM 383 (1323)
Q Consensus 309 wylkq~l~~~~-~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~---~~~~d~~~v~viDg~~l~lt~l~~~~vPppm 383 (1323)
- -| .|.. ++. +.++=||...+ ++.+..+| +.++..-.. .+.++.++..| .++.|...+|+..---+-|
T Consensus 284 ~--v~--tfrrendRFW~laahP~lNL-fAAgHDsG-m~VFkleRErpa~~v~~n~LfYv-kd~~i~~~d~~t~~d~~v~ 356 (1202)
T KOG0292|consen 284 S--VQ--TFRRENDRFWILAAHPELNL-FAAGHDSG-MIVFKLERERPAYAVNGNGLFYV-KDRFIRSYDLRTQKDTAVA 356 (1202)
T ss_pred c--ee--eeeccCCeEEEEEecCCcce-eeeecCCc-eEEEEEcccCceEEEcCCEEEEE-ccceEEeeeccccccceeE
Confidence 1 12 2322 344 88888998764 55555444 433222111 11334443333 4677777777753222222
Q ss_pred eeeeec-CCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCC
Q 000736 384 YLFSLK-FPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1323)
Q Consensus 384 ~~~~l~-~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~ 424 (1323)
..+... .-.++.+++|+|.-.--.|.+-..+|+..|+..+.
T Consensus 357 ~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk 398 (1202)
T KOG0292|consen 357 SLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPK 398 (1202)
T ss_pred eccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecC
Confidence 222221 23567899999986111233334667788887753
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9e-21 Score=233.78 Aligned_cols=305 Identities=16% Similarity=0.183 Sum_probs=210.1
Q ss_pred EeceecCcEEEEEEcCCCCeEEEEe--CCccEEEEeecCceee-eeeecccCCCceeccCccccCCCCeEEEEEecCCcE
Q 000736 111 VVGRVEGGVRFISPSPDGDLLGVTT--GFGQILVMTHDWDLLY-ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKY 187 (1323)
Q Consensus 111 ~vg~~~~~I~~~awSPDG~~LA~~s--~d~tV~l~t~~~d~~~-e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~ 187 (1323)
.++|++..|.++..+|||..+|+++ .|+.+.+|+.+ ++. +.......-.+++ .+...|++.+.++.|+|||+|
T Consensus 8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~--~vl~~~~~~~~~l~k~l--~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQD--PVLDEKEEKNENLPKHL--CTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred ccccCCeeEEEEEecCCceeEecCCccccccceeeccc--cccchhhhhhcccchhh--eeeccccCceeEEEECCCCCe
Confidence 5677777899999999999999999 89999999753 221 1110000001111 222367889999999999999
Q ss_pred EEEeeccccccCCCCEEEEEECCC-------C-----------ceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCC
Q 000736 188 FATLSEFCNSSKLHKRLKVWERDS-------G-----------TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKC 249 (1323)
Q Consensus 188 lAtvss~d~~~~~d~~IrVWd~~~-------G-----------~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~ 249 (1323)
|| +|+ .|+.|.||.+.+ | +...++.+|++-|..++|+|++.++||++-|
T Consensus 84 lA-sGS------DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~D------ 150 (942)
T KOG0973|consen 84 LA-SGS------DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLD------ 150 (942)
T ss_pred Ee-ecc------CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEeccc------
Confidence 99 774 469999999952 1 1455678899999999999999999999996
Q ss_pred CeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecC----Cc--E
Q 000736 250 PSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRR----DG--I 323 (1323)
Q Consensus 250 ~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~----~~--~ 323 (1323)
+.|.+|+..-. +..-++++ |...|..+.|.|-|++||+.+.|+ +|++|.+.+ |-+-+.+..+-. .. .
T Consensus 151 nsViiwn~~tF-~~~~vl~~-H~s~VKGvs~DP~Gky~ASqsdDr---tikvwrt~d--w~i~k~It~pf~~~~~~T~f~ 223 (942)
T KOG0973|consen 151 NSVIIWNAKTF-ELLKVLRG-HQSLVKGVSWDPIGKYFASQSDDR---TLKVWRTSD--WGIEKSITKPFEESPLTTFFL 223 (942)
T ss_pred ceEEEEccccc-eeeeeeec-ccccccceEECCccCeeeeecCCc---eEEEEEccc--ceeeEeeccchhhCCCcceee
Confidence 56999984221 11112333 357899999999999999999999 999999876 655555543221 12 5
Q ss_pred EEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeee-ecCCCCEEEEEEecC
Q 000736 324 RFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFS-LKFPTAVTEMAFYSK 402 (1323)
Q Consensus 324 ~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~-l~~~~~V~~VaFSpd 402 (1323)
.+.|||||.. |++... + . .+..++++++-++ |.. .+. ++|.+++..|+|+|.
T Consensus 224 RlSWSPDG~~-las~nA---~---------n-~~~~~~~IieR~t---Wk~----------~~~LvGH~~p~evvrFnP~ 276 (942)
T KOG0973|consen 224 RLSWSPDGHH-LASPNA---V---------N-GGKSTIAIIERGT---WKV----------DKDLVGHSAPVEVVRFNPK 276 (942)
T ss_pred ecccCCCcCe-ecchhh---c---------c-CCcceeEEEecCC---cee----------eeeeecCCCceEEEEeChH
Confidence 6899999875 433221 0 0 1223455555433 111 112 478899999999884
Q ss_pred --------CCC---C----EEEEEECCCcEEEEECCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEec
Q 000736 403 --------SSK---N----CLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHH 467 (1323)
Q Consensus 403 --------g~~---~----~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~ 467 (1323)
|.. + .+|+|+.|++|.||....+..+ +--+ .....+|..++|+|||..|.+++.
T Consensus 277 lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl--~vi~---------~lf~~SI~DmsWspdG~~LfacS~ 345 (942)
T KOG0973|consen 277 LFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL--FVIH---------NLFNKSIVDMSWSPDGFSLFACSL 345 (942)
T ss_pred HhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch--hhhh---------hhhcCceeeeeEcCCCCeEEEEec
Confidence 111 2 7999999999999998643322 1111 112348999999999988877777
Q ss_pred CCCCeeEEEEee
Q 000736 468 GPRHSNYFRGAT 479 (1323)
Q Consensus 468 ~~~~~~~~~~~~ 479 (1323)
+ .++.++.+.
T Consensus 346 D--GtV~~i~Fe 355 (942)
T KOG0973|consen 346 D--GTVALIHFE 355 (942)
T ss_pred C--CeEEEEEcc
Confidence 6 567666654
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.5e-20 Score=237.99 Aligned_cols=281 Identities=9% Similarity=0.053 Sum_probs=198.3
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEec-CCCEEEEEeCCCcEE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM-EKEALIVGTSSGLLL 100 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~sp-dg~~La~as~dG~I~ 100 (1323)
.+.+++|+++++.+++++.|+.|..|+.+ +..........+ .. .+.....|.+++|+| ++..|++++.||+|+
T Consensus 485 ~V~~i~fs~dg~~latgg~D~~I~iwd~~--~~~~~~~~~~~~--~~--~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~ 558 (793)
T PLN00181 485 LVCAIGFDRDGEFFATAGVNKKIKIFECE--SIIKDGRDIHYP--VV--ELASRSKLSGICWNSYIKSQVASSNFEGVVQ 558 (793)
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECC--cccccccccccc--eE--EecccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence 78899999999999999999999999983 210000000000 00 011135789999987 478999999999999
Q ss_pred EEeCCCCeE-EEeceecCcEEEEEEcC-CCCeEEEEeCCccEEEEee-cCceeeeeeecccCCCceeccCccccCCCCeE
Q 000736 101 LHSVDGNAT-EVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1323)
Q Consensus 101 lw~~~~~~~-e~vg~~~~~I~~~awSP-DG~~LA~~s~d~tV~l~t~-~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~ 177 (1323)
+||..+++. ..+..|.+.|++++|+| ||.+|++++.|++|++|+. .+..+..... ...+.
T Consensus 559 lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~-----------------~~~v~ 621 (793)
T PLN00181 559 VWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT-----------------KANIC 621 (793)
T ss_pred EEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec-----------------CCCeE
Confidence 999987653 45555789999999997 8999999999999999973 3333322211 13568
Q ss_pred EEEEe-cCCcEEEEeeccccccCCCCEEEEEECCCCc-eeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEE
Q 000736 178 PISWR-GDGKYFATLSEFCNSSKLHKRLKVWERDSGT-LQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1323)
Q Consensus 178 ~isWs-pDG~~lAtvss~d~~~~~d~~IrVWd~~~G~-l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~ 255 (1323)
++.|+ ++|.+|| +++ .+++|++||..++. ...+..+|.+.+.+++|. +|..|++++.| ..|++|
T Consensus 622 ~v~~~~~~g~~la-tgs------~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D------~~ikiW 687 (793)
T PLN00181 622 CVQFPSESGRSLA-FGS------ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTD------NTLKLW 687 (793)
T ss_pred EEEEeCCCCCEEE-EEe------CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECC------CEEEEE
Confidence 99994 6799999 664 36899999986665 456677899999999997 78889999886 469999
Q ss_pred eCCC-------eeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeE--EEeE-------EEEec
Q 000736 256 ERNG-------LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY--LKYE-------IRYLR 319 (1323)
Q Consensus 256 e~nG-------l~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wy--lkq~-------l~~~~ 319 (1323)
+... .... .+.+ +...+..++|+|+|.+||+++.|+ +|.+|+....... .+.. +....
T Consensus 688 d~~~~~~~~~~~~l~--~~~g-h~~~i~~v~~s~~~~~lasgs~D~---~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~ 761 (793)
T PLN00181 688 DLSMSISGINETPLH--SFMG-HTNVKNFVGLSVSDGYIATGSETN---EVFVYHKAFPMPVLSYKFKTIDPVSGLEVDD 761 (793)
T ss_pred eCCCCccccCCcceE--EEcC-CCCCeeEEEEcCCCCEEEEEeCCC---EEEEEECCCCCceEEEecccCCcccccccCC
Confidence 9641 1111 2222 356788999999999999999999 9999997643211 0000 00111
Q ss_pred -CC-cEEEEEccCCCcEEEEEecCCcEEE
Q 000736 320 -RD-GIRFMWHPTKPLQLICWTLDGQITT 346 (1323)
Q Consensus 320 -~~-~~~v~Wsp~~~~~L~~~~~~g~~~~ 346 (1323)
.. ...+.|+|++.. |+.++.+|.+.+
T Consensus 762 ~~~~V~~v~ws~~~~~-lva~~~dG~I~i 789 (793)
T PLN00181 762 ASQFISSVCWRGQSST-LVAANSTGNIKI 789 (793)
T ss_pred CCcEEEEEEEcCCCCe-EEEecCCCcEEE
Confidence 11 267788887764 666666776653
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-17 Score=204.37 Aligned_cols=316 Identities=18% Similarity=0.168 Sum_probs=193.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCCcchhHHhHHhhcCCCccHHHHHHHHHHHHhhcccCCCCCCCCChhhHHHHHHHHHh
Q 000736 808 ECNKVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLW 887 (1323)
Q Consensus 808 ~~~KV~~iC~a~~~~l~~~~~~~~~~~~~ilT~~v~~~pp~le~aL~~i~~l~~~~~~~~~~~~~~~~~~ae~alk~l~~ 887 (1323)
.++|-+.||++.|.-||. .++..+.+.-++.+..... +-+|....+++|-.- .-.=+. ++..-.+.+. .|
T Consensus 656 ~~~ka~VvLQ~~RGNLEt--I~pR~lVLa~vr~~l~~~~--y~~AF~~~RkhRidl-nii~d~---~~~~Fl~nv~--af 725 (1265)
T KOG1920|consen 656 VPQKAAVVLQMPRGNLET--IYPRILVLAKVRTLLDRLR--YKEAFEVMRKHRIDL-NIIFDY---DPKRFLKNVP--AF 725 (1265)
T ss_pred ccchhhHhHhhcCCCcee--echhhhHHHHHHHHHHHHH--HHHHHHHHHHhccCc-cchhhc---CHHHHHhhHH--HH
Confidence 467899999999999998 7899999999999998887 999999988887321 000000 1111122221 22
Q ss_pred hccHH-----HHHHHHHhccCh-hHHHHHHHHhc------CCccc----chH-h-HHHHhcC-CchhccccHHHHhcC--
Q 000736 888 LADSE-----AVYEAALGLYDL-NLAAIVALNSQ------RDPKE----FLP-Y-LQELESM-PPLLMRYTIDLRLQR-- 946 (1323)
Q Consensus 888 L~d~~-----~Ly~~ALg~yD~-~lal~VAq~sq------kDPke----YLp-f-L~~L~~l-~~~~~~~~Id~~L~r-- 946 (1323)
|=+.| .||=.+|.-=|+ +.+.-.--.|+ +||-. +++ - ++-|..- |..+..+-|-.|++.
T Consensus 726 l~~in~~~~l~lfl~~lk~eDvtk~~y~~~~~s~k~~~~~r~~~d~kv~~vc~~vr~~l~~~~~~~~~~~ilTs~vk~~~ 805 (1265)
T KOG1920|consen 726 LKQINRVNHLELFLTELKEEDVTKTMYSSTSGSGKQVYMSRDPYDNKVNSVCDAVRNALERRAPDKFNLFILTSYVKSNP 805 (1265)
T ss_pred hccCCcHHHHHHHHhhcccchhhhhhccccccccceeEEeccchhhHHHHHHHHHHHHHhhcCcchhhHHHHHHHHhcCc
Confidence 22211 344444543333 11110111111 34422 221 1 1222222 334555556666654
Q ss_pred --HHHHHHHHHHcC----CCcHHHHHHHH----HHHhcchHHHHhhc-------------CCcHHHHHHHHHHHHHHhcc
Q 000736 947 --FENALKHIVSMG----DSYHADCLNLM----KKYAQLFPLGLKLI-------------TDPAKMEQVLEAWADHLSDV 1003 (1323)
Q Consensus 947 --ye~Al~~l~~~g----~~~~~~ale~~----~~~~~ly~~AL~L~-------------~d~~~~~~i~~~~A~~L~~~ 1003 (1323)
-++||+.+.+.. ..-.++|++++ .-. .+|+.||.+| .||.++-++++.+=..=...
T Consensus 806 ~~ie~aL~kI~~l~~~~~~~~ad~al~hll~Lvdvn-~lfn~ALgtYDl~Lal~VAq~SqkDPkEyLP~L~el~~m~~~~ 884 (1265)
T KOG1920|consen 806 PEIEEALQKIKELQLAQVAVSADEALKHLLFLVDVN-ELFNSALGTYDLDLALLVAQKSQKDPKEYLPFLNELKKMETLL 884 (1265)
T ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHhhccHH-HHHHhhhcccchHHHHHHHHHhccChHHHHHHHHHHhhchhhh
Confidence 577777766553 22358888877 344 6788888776 49999998887765222222
Q ss_pred cCHHHHHHHHHhcCCHHHHHHHHHHhC--CHHHHHHHHhhc----------CCCHHHHHHHHHHHHHHHHHcCChHHHHH
Q 000736 1004 KCFEDAATTYFCCSSLEKAMKAYRASG--NWSGVLTVAGLL----------KLGKDEVAKLAQELCEELQALGKPGEAAK 1071 (1323)
Q Consensus 1004 ~~~~eAa~~y~~ag~~~kAl~~y~~ag--~W~~al~lA~~l----------~~~~~~~~~l~~~la~~L~~~~~~~eAa~ 1071 (1323)
++| .+-...++|++|+....++| .|.+++.+.++. ..+++..+.++...|++|.+.+++.+||-
T Consensus 885 rkF----~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal 960 (1265)
T KOG1920|consen 885 RKF----KIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAAL 960 (1265)
T ss_pred hhe----eHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 222 33344455555555555554 355554444432 34667778899999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcC--CchhH---HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q 000736 1072 IALDYCGDVTNGISLLIDARDWEEALRVAFMHR--REDLI---TKVKHAS------LECASSLIGEYKEGLEKVGKYLT 1139 (1323)
Q Consensus 1072 i~~~yl~d~e~Av~~~i~~~~w~eA~rla~~~~--~~dLi---e~V~~~l------~e~~~~~~e~l~e~~~~~~k~~~ 1139 (1323)
+|+. +|..++|+.+|...++|.+|+++|.+-. ..++. +++...| .|++..+.|.+.+.++++.-+++
T Consensus 961 ~Ye~-~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~k 1038 (1265)
T KOG1920|consen 961 MYER-CGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCK 1038 (1265)
T ss_pred HHHH-hccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhh
Confidence 9999 9999999999999999999999998644 33444 2233334 34566666666666666655543
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-21 Score=216.21 Aligned_cols=272 Identities=15% Similarity=0.156 Sum_probs=204.4
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1323)
.+..+.|-+||.+|.++|+++-+.+|+...++.+. | +-+| .+.|.++.||++|..+++|..+|.|+.
T Consensus 98 ~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEt---i------lQaH----Ds~Vr~m~ws~~g~wmiSgD~gG~iKy 164 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFET---I------LQAH----DSPVRTMKWSHNGTWMISGDKGGMIKY 164 (464)
T ss_pred ceeeEEEcCCCceeEeecccccEEEecCceeeHHH---H------hhhh----cccceeEEEccCCCEEEEcCCCceEEe
Confidence 46667899999999999999999999994333332 2 2334 357999999999999999999999999
Q ss_pred EeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEE
Q 000736 102 HSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1323)
Q Consensus 102 w~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~is 180 (1323)
|+.+-.-+. +-++|...|++++|||...-++++|+||+|+||+- ..... +.+..+|.-.+.++.
T Consensus 165 WqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf----~~~ke-----------e~vL~GHgwdVksvd 229 (464)
T KOG0284|consen 165 WQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDF----RMPKE-----------ERVLRGHGWDVKSVD 229 (464)
T ss_pred cccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEec----cCCch-----------hheeccCCCCcceec
Confidence 998865555 44566688999999999999999999999999852 11111 112224555678999
Q ss_pred EecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCe
Q 000736 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL 260 (1323)
Q Consensus 181 WspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl 260 (1323)
|.|.-..+| +++ .|..||+||+.+|.++.++..|...|..+.|+|+|++|+++|+| ..+++||..-
T Consensus 230 WHP~kgLia-sgs------kDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD------~~~kv~DiR~- 295 (464)
T KOG0284|consen 230 WHPTKGLIA-SGS------KDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKD------QSCKVFDIRT- 295 (464)
T ss_pred cCCccceeE-Ecc------CCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCC------ceEEEEehhH-
Confidence 999988888 664 35799999999999999999999999999999999999999997 4699998531
Q ss_pred eEEEEEeccCCCCcEEEEEEccC-CCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEec-CCcEEEEEccCCCcEEEEE
Q 000736 261 ERSSFDINEQIDSTVELLKWNCM-SDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLR-RDGIRFMWHPTKPLQLICW 338 (1323)
Q Consensus 261 ~~~~f~l~~~~~~~V~~laWSpD-g~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~-~~~~~v~Wsp~~~~~L~~~ 338 (1323)
...-|+.+++ ...|.+++|+|= -.+|++++.|+ .|..|.+....- .-++...+ ...++++|||-|.. |+.+
T Consensus 296 mkEl~~~r~H-kkdv~~~~WhP~~~~lftsgg~Dg---svvh~~v~~~~p--~~~i~~AHd~~iwsl~~hPlGhi-l~tg 368 (464)
T KOG0284|consen 296 MKELFTYRGH-KKDVTSLTWHPLNESLFTSGGSDG---SVVHWVVGLEEP--LGEIPPAHDGEIWSLAYHPLGHI-LATG 368 (464)
T ss_pred hHHHHHhhcc-hhhheeeccccccccceeeccCCC---ceEEEecccccc--ccCCCcccccceeeeecccccee-Eeec
Confidence 1111333333 456999999995 45888999998 899998862110 11222222 23389999998754 4444
Q ss_pred ecCC
Q 000736 339 TLDG 342 (1323)
Q Consensus 339 ~~~g 342 (1323)
+.|.
T Consensus 369 snd~ 372 (464)
T KOG0284|consen 369 SNDR 372 (464)
T ss_pred CCCc
Confidence 4333
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.3e-19 Score=217.99 Aligned_cols=225 Identities=13% Similarity=0.165 Sum_probs=163.9
Q ss_pred CCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCe--------EEEeceecCcEEEEEEcCCC-CeEEEEeCCccEEEEe
Q 000736 75 GDSITAFDYLM-EKEALIVGTSSGLLLLHSVDGNA--------TEVVGRVEGGVRFISPSPDG-DLLGVTTGFGQILVMT 144 (1323)
Q Consensus 75 ~~~V~~v~~sp-dg~~La~as~dG~I~lw~~~~~~--------~e~vg~~~~~I~~~awSPDG-~~LA~~s~d~tV~l~t 144 (1323)
.+.|.+++|+| +++.|++|+.||+|++||+.++. +..+..|...|.+++|+|++ .+||+++.|++|++|+
T Consensus 75 ~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWD 154 (493)
T PTZ00421 75 EGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWD 154 (493)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEE
Confidence 47899999999 89999999999999999986531 23344468899999999986 6999999999999986
Q ss_pred ec-CceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCC
Q 000736 145 HD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF 223 (1323)
Q Consensus 145 ~~-~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~ 223 (1323)
.. ...+.. +.+|.+.+.+++|+|||.+|| +++ .|++|+|||..+|+...+..+|.+
T Consensus 155 l~tg~~~~~----------------l~~h~~~V~sla~spdG~lLa-tgs------~Dg~IrIwD~rsg~~v~tl~~H~~ 211 (493)
T PTZ00421 155 VERGKAVEV----------------IKCHSDQITSLEWNLDGSLLC-TTS------KDKKLNIIDPRDGTIVSSVEAHAS 211 (493)
T ss_pred CCCCeEEEE----------------EcCCCCceEEEEEECCCCEEE-Eec------CCCEEEEEECCCCcEEEEEecCCC
Confidence 32 222211 224567889999999999999 554 368999999989999888887766
Q ss_pred c-eeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEE-eccCCCCcEEEEEEccCCCeeEEEEc-cCCCCeEE
Q 000736 224 M-GAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFD-INEQIDSTVELLKWNCMSDLLAAVVR-FEEYDSVK 300 (1323)
Q Consensus 224 ~-v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~-l~~~~~~~V~~laWSpDg~~LA~~~~-d~~~~~V~ 300 (1323)
. ...+.|.|++..|++++..+. ....|++||...... .+. ...+....+....|+||+.+|++++. |+ .|+
T Consensus 212 ~~~~~~~w~~~~~~ivt~G~s~s--~Dr~VklWDlr~~~~-p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg---~Ir 285 (493)
T PTZ00421 212 AKSQRCLWAKRKDLIITLGCSKS--QQRQIMLWDTRKMAS-PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEG---NIR 285 (493)
T ss_pred CcceEEEEcCCCCeEEEEecCCC--CCCeEEEEeCCCCCC-ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCC---eEE
Confidence 4 357889999998887764321 246799999542211 111 11122335667789999999999874 77 899
Q ss_pred EEEeeCCeeEEEeEEEEecCCc-EEEEEccC
Q 000736 301 ICFFSNNHWYLKYEIRYLRRDG-IRFMWHPT 330 (1323)
Q Consensus 301 LW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~ 330 (1323)
+|++.+.+.+.. ..+...++ ..+.|.|.
T Consensus 286 iwdl~~~~~~~~--~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 286 CFELMNERLTFC--SSYSSVEPHKGLCMMPK 314 (493)
T ss_pred EEEeeCCceEEE--eeccCCCCCcceEeccc
Confidence 999998765432 33322233 45566654
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-19 Score=190.97 Aligned_cols=250 Identities=11% Similarity=0.066 Sum_probs=190.3
Q ss_pred ccccccceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeC
Q 000736 16 LQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTS 95 (1323)
Q Consensus 16 ~~~~~~~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~ 95 (1323)
++-+...+..+.+.+|+.-|..++--+ |..+|++ +++-. .+.+ +.++ ...|++|.|..||+.+.+|++
T Consensus 36 iqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~~--S~np~-Pv~t----~e~h----~kNVtaVgF~~dgrWMyTgse 103 (311)
T KOG0315|consen 36 IQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYDLN--SNNPN-PVAT----FEGH----TKNVTAVGFQCDGRWMYTGSE 103 (311)
T ss_pred EecCccceeeEEEcCCcchhhhccCCe-eEEEEcc--CCCCC-ceeE----Eecc----CCceEEEEEeecCeEEEecCC
Confidence 333333788999999999888887776 9999995 33321 1222 3322 468999999999999999999
Q ss_pred CCcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCC
Q 000736 96 SGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSF 175 (1323)
Q Consensus 96 dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1323)
||+++|||+..-.+...=.+...|+++...|++.-|.+++.+|.|.+|+-.-+.-+... -+++ +..
T Consensus 104 Dgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l-iPe~-------------~~~ 169 (311)
T KOG0315|consen 104 DGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL-IPED-------------DTS 169 (311)
T ss_pred CceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc-CCCC-------------Ccc
Confidence 99999999988555422234689999999999999999999999988764322222222 2221 246
Q ss_pred eEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeee------eccCCCceeEEEEccCCCeEEEEecCCCCCCC
Q 000736 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS------SELKAFMGAVLEWMPSGANIAAVYDRKSENKC 249 (1323)
Q Consensus 176 i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t------~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~ 249 (1323)
+.+++--|||.+++ .+ +..+...||+.-++...+- +..|.+.+...-+|||+++||+++.|+
T Consensus 170 i~sl~v~~dgsml~-a~------nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdk----- 237 (311)
T KOG0315|consen 170 IQSLTVMPDGSMLA-AA------NNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDK----- 237 (311)
T ss_pred eeeEEEcCCCcEEE-Ee------cCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCc-----
Confidence 68999999999998 33 2357899999855443332 445788889999999999999999974
Q ss_pred CeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCe
Q 000736 250 PSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1323)
Q Consensus 250 ~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~ 308 (1323)
+|++|+..+-...+..+.++ +.+|+..+||.||++|++++.|. +++||++.+.+
T Consensus 238 -tv~iwn~~~~~kle~~l~gh-~rWvWdc~FS~dg~YlvTassd~---~~rlW~~~~~k 291 (311)
T KOG0315|consen 238 -TVKIWNTDDFFKLELVLTGH-QRWVWDCAFSADGEYLVTASSDH---TARLWDLSAGK 291 (311)
T ss_pred -eEEEEecCCceeeEEEeecC-CceEEeeeeccCccEEEecCCCC---ceeecccccCc
Confidence 69999988765555555443 57999999999999999999998 99999998753
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-19 Score=213.83 Aligned_cols=277 Identities=17% Similarity=0.172 Sum_probs=201.0
Q ss_pred EeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000736 26 SALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVD 105 (1323)
Q Consensus 26 ~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~~ 105 (1323)
+.|. -.+.|.++.+.. +|+|+. .++++ .. +..+. .+.|+++.|+++|..||+|..+|.|.|||..
T Consensus 183 ldWs-s~n~laValg~~-vylW~~--~s~~v----~~----l~~~~---~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~ 247 (484)
T KOG0305|consen 183 LDWS-SANVLAVALGQS-VYLWSA--SSGSV----TE----LCSFG---EELVTSVKWSPDGSHLAVGTSDGTVQIWDVK 247 (484)
T ss_pred hhcc-cCCeEEEEecce-EEEEec--CCCce----EE----eEecC---CCceEEEEECCCCCEEEEeecCCeEEEEehh
Confidence 3455 467788777766 999999 56653 11 22221 4689999999999999999999999999987
Q ss_pred CC-eEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEec
Q 000736 106 GN-ATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG 183 (1323)
Q Consensus 106 ~~-~~e-~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWsp 183 (1323)
.. .++ ..++|...|-+++|+ +..|.+|+.|+.|..++.. ...... . ..++|...|+.+.|++
T Consensus 248 ~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR----~~~~~~---------~-~~~~H~qeVCgLkws~ 311 (484)
T KOG0305|consen 248 EQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVR----ISQHVV---------S-TLQGHRQEVCGLKWSP 311 (484)
T ss_pred hccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEe----cchhhh---------h-hhhcccceeeeeEECC
Confidence 63 444 444488999999999 6789999999999775421 111110 0 1336677889999999
Q ss_pred CCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccC-CCeEEEEecCCCCCCCCeEEEEeCCC-ee
Q 000736 184 DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS-GANIAAVYDRKSENKCPSIVFYERNG-LE 261 (1323)
Q Consensus 184 DG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPd-G~lIAs~s~d~~~~~~~~V~~~e~nG-l~ 261 (1323)
||.+|| ++ +.|+.+.|||...-+...+...|.+-|.+++|+|- ..+||+|+.-. +..|+||+.++ ..
T Consensus 312 d~~~lA-SG------gnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~----D~~i~fwn~~~g~~ 380 (484)
T KOG0305|consen 312 DGNQLA-SG------GNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSA----DRCIKFWNTNTGAR 380 (484)
T ss_pred CCCeec-cC------CCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCc----ccEEEEEEcCCCcE
Confidence 999999 66 35799999999666667777789999999999995 67899987643 57899999763 22
Q ss_pred EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecC
Q 000736 262 RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLD 341 (1323)
Q Consensus 262 ~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~ 341 (1323)
... + .-...|.+|.||+..+-|+++.... .+.|.||....+. .++.
T Consensus 381 i~~--v--dtgsQVcsL~Wsk~~kEi~sthG~s-~n~i~lw~~ps~~-------------------------~~~~---- 426 (484)
T KOG0305|consen 381 IDS--V--DTGSQVCSLIWSKKYKELLSTHGYS-ENQITLWKYPSMK-------------------------LVAE---- 426 (484)
T ss_pred ecc--c--ccCCceeeEEEcCCCCEEEEecCCC-CCcEEEEeccccc-------------------------eeee----
Confidence 211 1 1135699999999986666554322 1246666543210 0000
Q ss_pred CcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEE
Q 000736 342 GQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1323)
Q Consensus 342 g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~ 421 (1323)
-..|...|..+++|||| ..+++++.|.|+++|+
T Consensus 427 ---------------------------------------------l~gH~~RVl~la~SPdg--~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 427 ---------------------------------------------LLGHTSRVLYLALSPDG--ETIVTGAADETLRFWN 459 (484)
T ss_pred ---------------------------------------------ecCCcceeEEEEECCCC--CEEEEecccCcEEecc
Confidence 01467789999999999 8999999999999999
Q ss_pred CCCC
Q 000736 422 LPAP 425 (1323)
Q Consensus 422 ~~~~ 425 (1323)
+-+.
T Consensus 460 ~f~~ 463 (484)
T KOG0305|consen 460 LFDE 463 (484)
T ss_pred ccCC
Confidence 8653
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.5e-20 Score=204.45 Aligned_cols=293 Identities=14% Similarity=0.182 Sum_probs=204.0
Q ss_pred eEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcE
Q 000736 108 ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKY 187 (1323)
Q Consensus 108 ~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~ 187 (1323)
+..++..|.+.|+-+.|||+|++||++|.|.|..+|....|..-.. .++.. +|..+|..|.||||.+|
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl-~~tlv-----------gh~~~V~yi~wSPDdry 283 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKL-KKTLV-----------GHSQPVSYIMWSPDDRY 283 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceee-eeeee-----------cccCceEEEEECCCCCe
Confidence 3446677899999999999999999999999999986544432111 11111 56678899999999999
Q ss_pred EEEeeccccccCCCCEEEEEECCCCceeeeecc-CCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEE
Q 000736 188 FATLSEFCNSSKLHKRLKVWERDSGTLQASSEL-KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFD 266 (1323)
Q Consensus 188 lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~-~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~ 266 (1323)
+.+++. +..+++||..+|.+...... +...+.+.+|.|||..+.+|+.| ..+.-|+.+|...+.+.
T Consensus 284 LlaCg~-------~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d------r~i~~wdlDgn~~~~W~ 350 (519)
T KOG0293|consen 284 LLACGF-------DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPD------RTIIMWDLDGNILGNWE 350 (519)
T ss_pred EEecCc-------hHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCC------CcEEEecCCcchhhccc
Confidence 986653 35699999999998887553 34567999999999999999886 45889999987655432
Q ss_pred eccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEE-ecCCc-EEEEEccCCCcEEEEEecCCcE
Q 000736 267 INEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRY-LRRDG-IRFMWHPTKPLQLICWTLDGQI 344 (1323)
Q Consensus 267 l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~-~~~~~-~~v~Wsp~~~~~L~~~~~~g~~ 344 (1323)
+.....|.+++.++||+.+.+.+.|. .|++++..... +... ....+ +++.-|.++ .+
T Consensus 351 --gvr~~~v~dlait~Dgk~vl~v~~d~---~i~l~~~e~~~-----dr~lise~~~its~~iS~d~-----------k~ 409 (519)
T KOG0293|consen 351 --GVRDPKVHDLAITYDGKYVLLVTVDK---KIRLYNREARV-----DRGLISEEQPITSFSISKDG-----------KL 409 (519)
T ss_pred --ccccceeEEEEEcCCCcEEEEEeccc---ceeeechhhhh-----hhccccccCceeEEEEcCCC-----------cE
Confidence 11234699999999999998888888 79999876421 1100 01112 333333333 22
Q ss_pred EEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCC
Q 000736 345 TTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1323)
Q Consensus 345 ~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~ 424 (1323)
.. .....+.+.+|++..+.++..-..+ .....|..-.|.-.. ...+|+|+.|+.|+||+...
T Consensus 410 ~L---------------vnL~~qei~LWDl~e~~lv~kY~Gh--kq~~fiIrSCFgg~~-~~fiaSGSED~kvyIWhr~s 471 (519)
T KOG0293|consen 410 AL---------------VNLQDQEIHLWDLEENKLVRKYFGH--KQGHFIIRSCFGGGN-DKFIASGSEDSKVYIWHRIS 471 (519)
T ss_pred EE---------------EEcccCeeEEeecchhhHHHHhhcc--cccceEEEeccCCCC-cceEEecCCCceEEEEEccC
Confidence 11 1123456777887755443221111 112334444453322 26899999999999999988
Q ss_pred CCccccccCCceeEeeeccccccCcEEEEEEecCC-eEEEEEecCCCCeeEEEEe
Q 000736 425 PDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSH-LLLSVSHHGPRHSNYFRGA 478 (1323)
Q Consensus 425 ~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~-~lla~~~~~~~~~~~~~~~ 478 (1323)
+..+.++.|| ...|..++|.|.+ .++|+++++ +++.+|..
T Consensus 472 gkll~~LsGH------------s~~vNcVswNP~~p~m~ASasDD--gtIRIWg~ 512 (519)
T KOG0293|consen 472 GKLLAVLSGH------------SKTVNCVSWNPADPEMFASASDD--GTIRIWGP 512 (519)
T ss_pred CceeEeecCC------------cceeeEEecCCCCHHHhhccCCC--CeEEEecC
Confidence 7777677775 3479999999965 678988887 78999965
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-19 Score=191.99 Aligned_cols=258 Identities=16% Similarity=0.150 Sum_probs=187.5
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecC-CCEEEEEeCCCcEE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLME-KEALIVGTSSGLLL 100 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spd-g~~La~as~dG~I~ 100 (1323)
.+..++|..+|..|.++|-|+....|++ .-...... ...++| ++.|..+.|+|. ...+++++.|.+|+
T Consensus 22 ~v~Sv~wn~~g~~lasgs~dktv~v~n~--e~~r~~~~-----~~~~gh----~~svdql~w~~~~~d~~atas~dk~ir 90 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSFDKTVSVWNL--ERDRFRKE-----LVYRGH----TDSVDQLCWDPKHPDLFATASGDKTIR 90 (313)
T ss_pred cceEEEEcccCceeeecccCCceEEEEe--cchhhhhh-----hcccCC----CcchhhheeCCCCCcceEEecCCceEE
Confidence 6888999999999999999998888988 22221000 012333 467888999885 47899999999999
Q ss_pred EEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe-ecCceeee---------eeecccCC------C-ce
Q 000736 101 LHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYE---------NPLEELAE------G-FD 163 (1323)
Q Consensus 101 lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t-~~~d~~~e---------~~l~~~~~------~-~~ 163 (1323)
+||...+++-..-...++-..+.|||||+++|.++.|..|.+.+ +...+..+ ..++...+ + +.
T Consensus 91 ~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 91 IWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred EEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence 99998766532222356667789999999999999998887664 44444332 22221110 0 11
Q ss_pred ec---------cCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCC
Q 000736 164 VH---------EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG 234 (1323)
Q Consensus 164 Vs---------~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG 234 (1323)
|. ....++|.....+|.|+|||+||| +|+. |..+-+||.++-.+..+...++.+|..|+||-||
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA-~GsA------DAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg 243 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFA-TGSA------DALVSLWDVDELICERCISRLDWPVRTLSFSHDG 243 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECCCCceEe-eccc------cceeeccChhHhhhheeeccccCceEEEEeccCc
Confidence 10 122337889999999999999999 8865 4789999998888888888899999999999999
Q ss_pred CeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCC------CeEEEEEeeC
Q 000736 235 ANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEY------DSVKICFFSN 306 (1323)
Q Consensus 235 ~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~------~~V~LW~~~n 306 (1323)
++|||+|.|- -.+|..- ..|.+..+. +.++..+.++|+|..-+||.++.|..+ ++|||+-..|
T Consensus 244 ~~lASaSEDh----~IDIA~v-etGd~~~eI----~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~~ 312 (313)
T KOG1407|consen 244 RMLASASEDH----FIDIAEV-ETGDRVWEI----PCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLSN 312 (313)
T ss_pred ceeeccCccc----eEEeEec-ccCCeEEEe----eccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCCC
Confidence 9999999863 2333322 345544432 235668899999999999999998854 4788776543
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.3e-19 Score=196.25 Aligned_cols=284 Identities=13% Similarity=0.175 Sum_probs=208.8
Q ss_pred CCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEE-EeceecCcEEEEEE-cCC--CCeEEEEeCCccEEEEeecC
Q 000736 72 LEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISP-SPD--GDLLGVTTGFGQILVMTHDW 147 (1323)
Q Consensus 72 ~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~aw-SPD--G~~LA~~s~d~tV~l~t~~~ 147 (1323)
++..|.|.+|.-. ++.+.+|+-||++++|+..|.... .+| |.+.|.+++| .+| ..++++++.|+++.+|. |
T Consensus 102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~G-ht~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~--~ 176 (423)
T KOG0313|consen 102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVG-HTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWK--W 176 (423)
T ss_pred ccchhhhhhhccc--CceEEEeecCCeeEEEecCCceEEEEec-CCcceeeeEEEecCCccceEEEecCCceEEEEE--e
Confidence 3446788888777 789999999999999999997665 555 5899998888 344 33699999999999984 2
Q ss_pred ceee--eeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECC---------------
Q 000736 148 DLLY--ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD--------------- 210 (1323)
Q Consensus 148 d~~~--e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~--------------- 210 (1323)
++-. .... .+-+||...|.+|+-.+||..|+ ++++ |.+++||+.+
T Consensus 177 ~~~~~~~~~~-----------~~~~GHk~~V~sVsv~~sgtr~~-SgS~------D~~lkiWs~~~~~~~~~E~~s~~rr 238 (423)
T KOG0313|consen 177 NVGENKVKAL-----------KVCRGHKRSVDSVSVDSSGTRFC-SGSW------DTMLKIWSVETDEEDELESSSNRRR 238 (423)
T ss_pred cCchhhhhHH-----------hHhcccccceeEEEecCCCCeEE-eecc------cceeeecccCCCccccccccchhhh
Confidence 2210 0111 11227888999999999999999 6765 5899999921
Q ss_pred ----------CCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEE
Q 000736 211 ----------SGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKW 280 (1323)
Q Consensus 211 ----------~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laW 280 (1323)
++....++++|...|.++-|++ ...+.|++.| ++|+.||.. .+.............+++.
T Consensus 239 k~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwD------HTIk~WDle---tg~~~~~~~~~ksl~~i~~ 308 (423)
T KOG0313|consen 239 KKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWD------HTIKVWDLE---TGGLKSTLTTNKSLNCISY 308 (423)
T ss_pred hhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeeccc------ceEEEEEee---cccceeeeecCcceeEeec
Confidence 1234556788999999999999 4567788875 789999942 1111111112346889999
Q ss_pred ccCCCeeEEEEccCCCCeEEEEEeeCCee-EEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCe
Q 000736 281 NCMSDLLAAVVRFEEYDSVKICFFSNNHW-YLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENS 359 (1323)
Q Consensus 281 SpDg~~LA~~~~d~~~~~V~LW~~~n~~w-ylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~ 359 (1323)
+|.+.+||+|+.|. .++|||-.+..= ..+|.+..|.+-...+.|+|...++|..++-|
T Consensus 309 ~~~~~Ll~~gssdr---~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D------------------ 367 (423)
T KOG0313|consen 309 SPLSKLLASGSSDR---HIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYD------------------ 367 (423)
T ss_pred ccccceeeecCCCC---ceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecC------------------
Confidence 99999999999999 899999765422 33466666655447899999988766555433
Q ss_pred eEEEEeCCEEEEeecCCcCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECC
Q 000736 360 TALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1323)
Q Consensus 360 ~v~viDg~~l~lt~l~~~~vPppm~~~~l-~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~ 423 (1323)
+++++|++|..- .||+ .+ .|.+.|.+|.|+..+ .+++|+.|++|+++.-.
T Consensus 368 -------~t~klWDvRS~k--~ply--dI~~h~DKvl~vdW~~~~---~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 368 -------NTVKLWDVRSTK--APLY--DIAGHNDKVLSVDWNEGG---LIVSGGADNKLRIFKGS 418 (423)
T ss_pred -------CeEEEEEeccCC--Ccce--eeccCCceEEEEeccCCc---eEEeccCcceEEEeccc
Confidence 456777776532 1443 56 589999999998664 89999999999998764
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-19 Score=197.77 Aligned_cols=263 Identities=14% Similarity=0.101 Sum_probs=207.5
Q ss_pred eeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEE
Q 000736 23 LQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLH 102 (1323)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw 102 (1323)
+...-+-|.--.++++|+|..|+.||. .+++. ...|++|. +.|.+|+|+.-|+.||++|.|=.+++|
T Consensus 111 vt~v~~hp~~~~v~~as~d~tikv~D~--~tg~~-------e~~LrGHt----~sv~di~~~a~Gk~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 111 VTRVIFHPSEALVVSASEDATIKVFDT--ETGEL-------ERSLRGHT----DSVFDISFDASGKYLATCSSDLSAKLW 177 (406)
T ss_pred eeeeeeccCceEEEEecCCceEEEEEc--cchhh-------hhhhhccc----cceeEEEEecCccEEEecCCccchhhe
Confidence 344456677788888999999999999 77774 22377773 569999999999999999999999999
Q ss_pred eCCCC--eEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEE
Q 000736 103 SVDGN--ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1323)
Q Consensus 103 ~~~~~--~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~is 180 (1323)
|.++. .+...-.|+-+|.+++|=|-|.+|++++.|++|+.| +.-++.++.+ |.+|...+..|.
T Consensus 178 d~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~W----e~~tg~cv~t-----------~~~h~ewvr~v~ 242 (406)
T KOG0295|consen 178 DFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAW----ECDTGYCVKT-----------FPGHSEWVRMVR 242 (406)
T ss_pred eHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEE----ecccceeEEe-----------ccCchHhEEEEE
Confidence 99872 233233358899999999999999999999999876 4444455443 446777788999
Q ss_pred EecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccC---------------CCeEEEEecCCC
Q 000736 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS---------------GANIAAVYDRKS 245 (1323)
Q Consensus 181 WspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPd---------------G~lIAs~s~d~~ 245 (1323)
-+.||..|| +.+ .+.+++||-..++++...+..|...+.+++|.|. |+.++++++|+
T Consensus 243 v~~DGti~A-s~s------~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk- 314 (406)
T KOG0295|consen 243 VNQDGTIIA-SCS------NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK- 314 (406)
T ss_pred ecCCeeEEE-ecC------CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccc-
Confidence 999999999 443 3589999999899888888889999999999884 35788888874
Q ss_pred CCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEE
Q 000736 246 ENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRF 325 (1323)
Q Consensus 246 ~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v 325 (1323)
+|++||.+-- .--|+|.++ .++|.+++|+|-|++|++...|+ ++++||.+|.... ..+..++.-.+++
T Consensus 315 -----tIk~wdv~tg-~cL~tL~gh-dnwVr~~af~p~Gkyi~ScaDDk---tlrvwdl~~~~cm--k~~~ah~hfvt~l 382 (406)
T KOG0295|consen 315 -----TIKIWDVSTG-MCLFTLVGH-DNWVRGVAFSPGGKYILSCADDK---TLRVWDLKNLQCM--KTLEAHEHFVTSL 382 (406)
T ss_pred -----eEEEEeccCC-eEEEEEecc-cceeeeeEEcCCCeEEEEEecCC---cEEEEEeccceee--eccCCCcceeEEE
Confidence 6999996521 223566554 67999999999999999999999 9999999997642 2333333334788
Q ss_pred EEccCCCc
Q 000736 326 MWHPTKPL 333 (1323)
Q Consensus 326 ~Wsp~~~~ 333 (1323)
.||.+.|+
T Consensus 383 Dfh~~~p~ 390 (406)
T KOG0295|consen 383 DFHKTAPY 390 (406)
T ss_pred ecCCCCce
Confidence 89988874
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-18 Score=188.04 Aligned_cols=279 Identities=13% Similarity=0.167 Sum_probs=202.3
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe---EEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceee
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA---TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY 151 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~---~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~ 151 (1323)
.+.|..+.|+|||..||+|+.|..|.||++.+.. ....| |.+.|..+.|++||..|.+++.|.+|..| |..+
T Consensus 47 ~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkg-HsgAVM~l~~~~d~s~i~S~gtDk~v~~w----D~~t 121 (338)
T KOG0265|consen 47 KGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKG-HSGAVMELHGMRDGSHILSCGTDKTVRGW----DAET 121 (338)
T ss_pred cceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeecc-ccceeEeeeeccCCCEEEEecCCceEEEE----eccc
Confidence 5789999999999999999999999999987621 22334 69999999999999999999999999765 5555
Q ss_pred eeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEc
Q 000736 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM 231 (1323)
Q Consensus 152 e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slaws 231 (1323)
+....- |++|.+-+.++.=+--|..++ ++. ..|+++||||.+.-....+.+ ....+.+++|+
T Consensus 122 G~~~rk-----------~k~h~~~vNs~~p~rrg~~lv-~Sg-----sdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~ 183 (338)
T KOG0265|consen 122 GKRIRK-----------HKGHTSFVNSLDPSRRGPQLV-CSG-----SDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFK 183 (338)
T ss_pred ceeeeh-----------hccccceeeecCccccCCeEE-Eec-----CCCceEEEEeecccchhhccc-cceeEEEEEec
Confidence 554433 235555556666555677777 443 236999999987777776665 34567999999
Q ss_pred cCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeE
Q 000736 232 PSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1323)
Q Consensus 232 PdG~lIAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wy 310 (1323)
-++..+-+|+-| +.|++|+. ++ ++.+++.++ ...|..|+-||+|..|-+-+-|. +|++||+.-++--
T Consensus 184 d~s~qv~sggId------n~ikvWd~r~~--d~~~~lsGh-~DtIt~lsls~~gs~llsnsMd~---tvrvwd~rp~~p~ 251 (338)
T KOG0265|consen 184 DTSDQVISGGID------NDIKVWDLRKN--DGLYTLSGH-ADTITGLSLSRYGSFLLSNSMDN---TVRVWDVRPFAPS 251 (338)
T ss_pred ccccceeecccc------CceeeeccccC--cceEEeecc-cCceeeEEeccCCCccccccccc---eEEEEEecccCCC
Confidence 999999999986 57999995 22 233456655 46899999999999999999888 9999999876642
Q ss_pred EEeE--EEEecC--C--cEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCce
Q 000736 311 LKYE--IRYLRR--D--GIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMY 384 (1323)
Q Consensus 311 lkq~--l~~~~~--~--~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~ 384 (1323)
..+. ...+.. + -....|+|++.. +..++.| ...++|++.. .. +
T Consensus 252 ~R~v~if~g~~hnfeknlL~cswsp~~~~-i~ags~d----r~vyvwd~~~--r~------------------------~ 300 (338)
T KOG0265|consen 252 QRCVKIFQGHIHNFEKNLLKCSWSPNGTK-ITAGSAD----RFVYVWDTTS--RR------------------------I 300 (338)
T ss_pred CceEEEeecchhhhhhhcceeeccCCCCc-ccccccc----ceEEEeeccc--cc------------------------E
Confidence 2211 222211 1 266789998764 2232222 2334555431 01 1
Q ss_pred eeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEE
Q 000736 385 LFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1323)
Q Consensus 385 ~~~l-~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~ 421 (1323)
.+.+ .|.+.|++++|+|.- ..|-++++|.+|.|=+
T Consensus 301 lyklpGh~gsvn~~~Fhp~e--~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 301 LYKLPGHYGSVNEVDFHPTE--PIILSCSSDKTIYLGE 336 (338)
T ss_pred EEEcCCcceeEEEeeecCCC--cEEEEeccCceeEeec
Confidence 1223 377899999999998 8999999999998743
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.4e-17 Score=190.72 Aligned_cols=453 Identities=14% Similarity=0.122 Sum_probs=271.5
Q ss_pred eEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCC---EEEEEeCCCcEE
Q 000736 24 QFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKE---ALIVGTSSGLLL 100 (1323)
Q Consensus 24 ~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~---~La~as~dG~I~ 100 (1323)
...+| .-++.|.++++.. |..||+ ..- . ...+ +.+| ...|++++|.|+++ .+++|+.||.|+
T Consensus 18 ~v~sw-~~~~~vafGa~~~-Iav~dp--~k~-~--i~t~----l~GH----~a~VnC~~~l~~s~~~a~~vsG~sD~~v~ 82 (764)
T KOG1063|consen 18 KVSSW-GPGGLVAFGAGPA-IAVADP--EKI-L--IVTT----LDGH----VARVNCVHWLPTSEIVAEMVSGDSDGRVI 82 (764)
T ss_pred ccccc-cccceEEecCCce-EEEeCc--ccc-e--eEEe----ccCC----ccceEEEEEcccccccceEEEccCCCcEE
Confidence 34455 3456666666655 888998 222 1 1222 5555 46899999999998 899999999999
Q ss_pred EEeCCCCeEEEeceecC-cEEEEEEcCCCCeEEEEeCCccEEEEeecCcee---ee----------eeecccC-CCceec
Q 000736 101 LHSVDGNATEVVGRVEG-GVRFISPSPDGDLLGVTTGFGQILVMTHDWDLL---YE----------NPLEELA-EGFDVH 165 (1323)
Q Consensus 101 lw~~~~~~~e~vg~~~~-~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~---~e----------~~l~~~~-~~~~Vs 165 (1323)
+|.+....+..+-++++ .+.|++++.--........|+++.+|++.-+-+ .. .++.... +..++.
T Consensus 83 lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~ll 162 (764)
T KOG1063|consen 83 LWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLL 162 (764)
T ss_pred EEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEE
Confidence 99997433221111222 566677775444444447899999998632220 00 0110000 111111
Q ss_pred ---------------cCccc------cCCCCeEEEEEecCCc---EEEEeeccccccCCCCEEEEEECCCCc--------
Q 000736 166 ---------------EPELS------SSFSFKSPISWRGDGK---YFATLSEFCNSSKLHKRLKVWERDSGT-------- 213 (1323)
Q Consensus 166 ---------------~tqf~------~~~~~i~~isWspDG~---~lAtvss~d~~~~~d~~IrVWd~~~G~-------- 213 (1323)
..+|+ ||.|.|.+|+|+--|. ++| ++ ++|+.||||...-+.
T Consensus 163 a~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~la-S~------SQD~yIRiW~i~~~~~~~~~~~e 235 (764)
T KOG1063|consen 163 ACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLA-SS------SQDRYIRIWRIVLGDDEDSNERE 235 (764)
T ss_pred EecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEE-ec------CCceEEEEEEEEecCCccccccc
Confidence 22444 8999999999986654 566 44 357999999753221
Q ss_pred -----------------ee------eeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCC---CeeEEEEEe
Q 000736 214 -----------------LQ------ASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN---GLERSSFDI 267 (1323)
Q Consensus 214 -----------------l~------~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~n---Gl~~~~f~l 267 (1323)
.. ....+|+.+|.++-|+|+|..|.|++.|+ ++.+|++. |.-.....+
T Consensus 236 ~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDk------smiiW~pd~~tGiWv~~vRl 309 (764)
T KOG1063|consen 236 DSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADK------SMIIWKPDENTGIWVDVVRL 309 (764)
T ss_pred cccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCc------ceEEEecCCccceEEEEEEe
Confidence 11 12237999999999999998888888875 48889864 221111112
Q ss_pred c--cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEe-eCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcE
Q 000736 268 N--EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF-SNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQI 344 (1323)
Q Consensus 268 ~--~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~-~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~ 344 (1323)
- ++....-+..-|||+|..+.+.+..+ ..++|-. ++..|.....+.+|-+....+.|+|+|...|.+++ |.+-
T Consensus 310 Ge~gg~a~GF~g~lw~~n~~~ii~~g~~G---g~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~-DQTT 385 (764)
T KOG1063|consen 310 GEVGGSAGGFWGGLWSPNSNVIIAHGRTG---GFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSL-DQTT 385 (764)
T ss_pred ecccccccceeeEEEcCCCCEEEEecccC---cEEEEeccCccceeeccccccccccceeeeecCCCCEEEEecc-ccce
Confidence 1 11134578899999999888888877 7999994 45667655455555455589999999976333332 3221
Q ss_pred EE-EEE----EEe-ee---------------eCCCeeEEE----------------------------------------
Q 000736 345 TT-YNF----IWT-TA---------------VMENSTALV---------------------------------------- 363 (1323)
Q Consensus 345 ~~-~~~----~~~-~~---------------~~d~~~v~v---------------------------------------- 363 (1323)
.. ..| .|. ++ ..+...|.-
T Consensus 386 RlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~Vp 465 (764)
T KOG1063|consen 386 RLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVP 465 (764)
T ss_pred eeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccc
Confidence 10 011 000 00 001111111
Q ss_pred --------------EeCCEE---EEeecCCc---CCCCCceeee------------ecCCCCEEEEEEecCCCCCEEEEE
Q 000736 364 --------------IDGSKI---LVTPLSLS---LMPPPMYLFS------------LKFPTAVTEMAFYSKSSKNCLAAI 411 (1323)
Q Consensus 364 --------------iDg~~l---~lt~l~~~---~vPppm~~~~------------l~~~~~V~~VaFSpdg~~~~LAs~ 411 (1323)
-+|..- .=||+... ...||+-.+- ..|.--|.+++.||+| +.+|++
T Consensus 466 aLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~g--nliASa 543 (764)
T KOG1063|consen 466 ALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTG--NLIASA 543 (764)
T ss_pred cccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCC--CEEeeh
Confidence 112110 11122211 1125553211 1255569999999999 999997
Q ss_pred ECC-----CcEEEEECCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCeeEEEEeecccCccc
Q 000736 412 LSD-----GCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLL 486 (1323)
Q Consensus 412 s~D-----gti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~ 486 (1323)
... --|+||+..+-...+++.||. -.|.+++|||||++|++.+.+ .++.+|+...+.
T Consensus 544 CKS~~~ehAvI~lw~t~~W~~~~~L~~Hs------------LTVT~l~FSpdg~~LLsvsRD--Rt~sl~~~~~~~---- 605 (764)
T KOG1063|consen 544 CKSSLKEHAVIRLWNTANWLQVQELEGHS------------LTVTRLAFSPDGRYLLSVSRD--RTVSLYEVQEDI---- 605 (764)
T ss_pred hhhCCccceEEEEEeccchhhhheecccc------------eEEEEEEECCCCcEEEEeecC--ceEEeeeeeccc----
Confidence 543 468999987654444555543 369999999999999988876 578888763211
Q ss_pred cchhhhhhhhcccccccccccccccceeeeeecccCCcEE-EEeeCCCCCceEEEEeeCCeEEEEecc
Q 000736 487 GFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVI-AIAPNNAKKYSAFLQFHGGKISEYMSR 553 (1323)
Q Consensus 487 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~~~~~~~~~~~q~~dG~v~~~~~~ 553 (1323)
.+ ...+.... ...+|+ ...++| ++..++-.+.|.+|..|...
T Consensus 606 ---------------~~--------e~~fa~~k-~HtRIIWdcsW~p-de~~FaTaSRDK~VkVW~~~ 648 (764)
T KOG1063|consen 606 ---------------KD--------EFRFACLK-AHTRIIWDCSWSP-DEKYFATASRDKKVKVWEEP 648 (764)
T ss_pred ---------------ch--------hhhhcccc-ccceEEEEcccCc-ccceeEEecCCceEEEEecc
Confidence 00 00011111 123344 345677 77778889999999999654
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-17 Score=191.48 Aligned_cols=235 Identities=12% Similarity=0.158 Sum_probs=192.3
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeE-EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEee-cCceeee
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYE 152 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~-~~d~~~e 152 (1323)
.++|-+|+|+|.-..+..+.-+|+|.|||.+++.+ ..+.-.+-+|+++.|=+--+++++|+.|..|++++- .++.+
T Consensus 13 SdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV-- 90 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKV-- 90 (794)
T ss_pred CCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceee--
Confidence 57999999999999999999999999999998653 333334678999999999999999999999988752 12222
Q ss_pred eeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCC-ceeeeeccCCCceeEEEEc
Q 000736 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG-TLQASSELKAFMGAVLEWM 231 (1323)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G-~l~~t~e~~~~~v~slaws 231 (1323)
.+|.+|++.+.+|+-.|.--|+. +|| .|-+||+||-+.+ .+..++++|...|..|+|.
T Consensus 91 --------------~~FeAH~DyIR~iavHPt~P~vL-tsS------DDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fn 149 (794)
T KOG0276|consen 91 --------------KTFEAHSDYIRSIAVHPTLPYVL-TSS------DDMTIKLWDWENEWACEQTFEGHEHYVMQVAFN 149 (794)
T ss_pred --------------EEeeccccceeeeeecCCCCeEE-ecC------CccEEEEeeccCceeeeeEEcCcceEEEEEEec
Confidence 25668889999999999999998 554 3689999998433 4677899999999999999
Q ss_pred c-CCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCC--CeeEEEEccCCCCeEEEEEeeCCe
Q 000736 232 P-SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMS--DLLAAVVRFEEYDSVKICFFSNNH 308 (1323)
Q Consensus 232 P-dG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg--~~LA~~~~d~~~~~V~LW~~~n~~ 308 (1323)
| |-+..||++-|. +|++|.. |..+..|++.+| +..|+++.+=|-| -+|.+|+.|. +|++||.+|..
T Consensus 150 PkD~ntFaS~sLDr------TVKVWsl-gs~~~nfTl~gH-ekGVN~Vdyy~~gdkpylIsgaDD~---tiKvWDyQtk~ 218 (794)
T KOG0276|consen 150 PKDPNTFASASLDR------TVKVWSL-GSPHPNFTLEGH-EKGVNCVDYYTGGDKPYLISGADDL---TIKVWDYQTKS 218 (794)
T ss_pred CCCccceeeeeccc------cEEEEEc-CCCCCceeeecc-ccCcceEEeccCCCcceEEecCCCc---eEEEeecchHH
Confidence 9 567999999975 6999986 455667888755 5679999998765 4899999998 99999998754
Q ss_pred eEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEE
Q 000736 309 WYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITT 346 (1323)
Q Consensus 309 wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~ 346 (1323)
+ .|++.+|.++...+.|||+-|. +..++.||++..
T Consensus 219 C--V~TLeGHt~Nvs~v~fhp~lpi-iisgsEDGTvri 253 (794)
T KOG0276|consen 219 C--VQTLEGHTNNVSFVFFHPELPI-IISGSEDGTVRI 253 (794)
T ss_pred H--HHHhhcccccceEEEecCCCcE-EEEecCCccEEE
Confidence 3 4678888777788999999987 677778888754
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.6e-18 Score=208.30 Aligned_cols=226 Identities=9% Similarity=0.022 Sum_probs=157.4
Q ss_pred CCCEEEEEEecC-CCEEEEEeCCCcEEEEeCCCCe---------EEEeceecCcEEEEEEcCCCCe-EEEEeCCccEEEE
Q 000736 75 GDSITAFDYLME-KEALIVGTSSGLLLLHSVDGNA---------TEVVGRVEGGVRFISPSPDGDL-LGVTTGFGQILVM 143 (1323)
Q Consensus 75 ~~~V~~v~~spd-g~~La~as~dG~I~lw~~~~~~---------~e~vg~~~~~I~~~awSPDG~~-LA~~s~d~tV~l~ 143 (1323)
.+.|.+++|+|+ +..||+|+.||+|++|++.++. +..+..|...|.+++|+|++.. ||+++.|++|++|
T Consensus 74 ~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIW 153 (568)
T PTZ00420 74 TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIW 153 (568)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEE
Confidence 468999999997 7999999999999999986421 1234557889999999999986 5789999999998
Q ss_pred ee-cCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCC
Q 000736 144 TH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA 222 (1323)
Q Consensus 144 t~-~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~ 222 (1323)
+. ....+.... +.+.+.+++|+|||.+|| +++ .+++|+|||..+|+...++.+|.
T Consensus 154 Dl~tg~~~~~i~-----------------~~~~V~SlswspdG~lLa-t~s------~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 154 DIENEKRAFQIN-----------------MPKKLSSLKWNIKGNLLS-GTC------VGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred ECCCCcEEEEEe-----------------cCCcEEEEEECCCCCEEE-EEe------cCCEEEEEECCCCcEEEEEeccc
Confidence 63 222222111 224679999999999999 553 35899999998999998888888
Q ss_pred Ccee-----EEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCe--eEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCC
Q 000736 223 FMGA-----VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL--ERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEE 295 (1323)
Q Consensus 223 ~~v~-----slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl--~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~ 295 (1323)
+.+. ...|+|++++|++++.++. ....|++||.... ....+.+... .+.+.....+++|.++++|..|+
T Consensus 210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~--~~R~VkLWDlr~~~~pl~~~~ld~~-~~~L~p~~D~~tg~l~lsGkGD~- 285 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYILSTGFSKN--NMREMKLWDLKNTTSALVTMSIDNA-SAPLIPHYDESTGLIYLIGKGDG- 285 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEEEEEcCCC--CccEEEEEECCCCCCceEEEEecCC-ccceEEeeeCCCCCEEEEEECCC-
Confidence 7543 3346799999999887631 1246999995421 1222222211 12233333455699999999998
Q ss_pred CCeEEEEEeeCCeeEEEeEEEEecCCc-EEEEEccCCC
Q 000736 296 YDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKP 332 (1323)
Q Consensus 296 ~~~V~LW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~~~ 332 (1323)
+|++|++.... +..--.+....+ ..+.|.|...
T Consensus 286 --tIr~~e~~~~~--~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 286 --NCRYYQHSLGS--IRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred --eEEEEEccCCc--EEeecccccCCCccceEEccccc
Confidence 99999987542 111111222233 6678888654
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-19 Score=203.80 Aligned_cols=301 Identities=16% Similarity=0.130 Sum_probs=199.3
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe-----EE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCce
Q 000736 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-----TE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDL 149 (1323)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~-----~e-~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~ 149 (1323)
..|.++++-|.|-.+++|+-|-+|++||.++.. .. +...-...|++++|||.|+.|+.+++..+.++.+|++-.
T Consensus 168 k~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~ 247 (641)
T KOG0772|consen 168 KIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFE 247 (641)
T ss_pred eEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCce
Confidence 357889999999999999999999999998621 11 111112359999999999999999999999999998877
Q ss_pred eeeeeecccCCCceec-cCccccCCCCeEEEEEecCCc-EEEEeeccccccCCCCEEEEEECCCCc-eeeeec-----cC
Q 000736 150 LYENPLEELAEGFDVH-EPELSSSFSFKSPISWRGDGK-YFATLSEFCNSSKLHKRLKVWERDSGT-LQASSE-----LK 221 (1323)
Q Consensus 150 ~~e~~l~~~~~~~~Vs-~tqf~~~~~~i~~isWspDG~-~lAtvss~d~~~~~d~~IrVWd~~~G~-l~~t~e-----~~ 221 (1323)
+.+..-. + ++|. -..-+||...+.+.+|.|+.+ .|.|+| .|+++||||.+.-+ ...+.. +.
T Consensus 248 ~~e~~KG-D---QYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s-------~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 248 IVEFSKG-D---QYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCS-------YDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred eeeeecc-c---hhhhhhhccCCceeeeeccccccCcccceEEec-------CCCcEEEEecCCchhheeEEeeccCCCc
Confidence 6665422 1 2221 011136677889999999975 455343 36899999985432 222222 12
Q ss_pred CCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCee-EEEEEeccCCC--CcEEEEEEccCCCeeEEEEccCCCCe
Q 000736 222 AFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE-RSSFDINEQID--STVELLKWNCMSDLLAAVVRFEEYDS 298 (1323)
Q Consensus 222 ~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~-~~~f~l~~~~~--~~V~~laWSpDg~~LA~~~~d~~~~~ 298 (1323)
.-.+.+.+|+|||++||+|..|+ .|.+|+.-++. +-.+.++..|. ..|.+|+||+||++|++.+.|. +
T Consensus 317 Rv~~tsC~~nrdg~~iAagc~DG------SIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~---t 387 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKLIAAGCLDG------SIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD---T 387 (641)
T ss_pred ccCceeeecCCCcchhhhcccCC------ceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCC---c
Confidence 22468999999999999999864 69999963322 22334442222 3799999999999999999998 9
Q ss_pred EEEEEeeCCeeEEEeEEEEec--CCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCC
Q 000736 299 VKICFFSNNHWYLKYEIRYLR--RDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSL 376 (1323)
Q Consensus 299 V~LW~~~n~~wylkq~l~~~~--~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~ 376 (1323)
+++||+.|..--|. +...-. -..+.++|||+... |..++. + ......+...+-|-.++-
T Consensus 388 LKvWDLrq~kkpL~-~~tgL~t~~~~tdc~FSPd~kl-i~TGtS---~--------~~~~~~g~L~f~d~~t~d------ 448 (641)
T KOG0772|consen 388 LKVWDLRQFKKPLN-VRTGLPTPFPGTDCCFSPDDKL-ILTGTS---A--------PNGMTAGTLFFFDRMTLD------ 448 (641)
T ss_pred eeeeeccccccchh-hhcCCCccCCCCccccCCCceE-EEeccc---c--------cCCCCCceEEEEecccee------
Confidence 99999998642221 111101 12267899998753 333321 0 000011122222222210
Q ss_pred cCCCCCceeeeecC-CCCEEEEEEecCCCCCEEEEEECCCcEEEEECCC
Q 000736 377 SLMPPPMYLFSLKF-PTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1323)
Q Consensus 377 ~~vPppm~~~~l~~-~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~ 424 (1323)
..+.+.. ...|..+.|+|.- +.|.+++.||++++|=-++
T Consensus 449 -------~v~ki~i~~aSvv~~~WhpkL--NQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 449 -------TVYKIDISTASVVRCLWHPKL--NQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred -------eEEEecCCCceEEEEeecchh--hheeeecCCCceEEEECcc
Confidence 0122222 4568899999998 8999999999999986543
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5e-18 Score=179.41 Aligned_cols=276 Identities=14% Similarity=0.123 Sum_probs=193.0
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceecc
Q 000736 88 EALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHE 166 (1323)
Q Consensus 88 ~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~ 166 (1323)
-+|++|+-|.||++|...+|.+. .+.+-++.|+.+..+||++.||.|+. ..|++++ +-+..+- ++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD----~~S~np~-------Pv-- 76 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYD----LNSNNPN-------PV-- 76 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEE----ccCCCCC-------ce--
Confidence 47899999999999999999875 67776788999999999999998866 4787764 2211110 00
Q ss_pred CccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCC
Q 000736 167 PELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSE 246 (1323)
Q Consensus 167 tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~ 246 (1323)
..|-+|...|..|.|--||++.. +|+ +|+++||||.+.-.++..++ +...|++|..+|+-.-|.++...
T Consensus 77 ~t~e~h~kNVtaVgF~~dgrWMy-Tgs------eDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqs--- 145 (311)
T KOG0315|consen 77 ATFEGHTKNVTAVGFQCDGRWMY-TGS------EDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQS--- 145 (311)
T ss_pred eEEeccCCceEEEEEeecCeEEE-ecC------CCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCC---
Confidence 12335667789999999999999 553 57999999987766666666 55889999999987777777553
Q ss_pred CCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEe-----EEEEecCC
Q 000736 247 NKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKY-----EIRYLRRD 321 (1323)
Q Consensus 247 ~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq-----~l~~~~~~ 321 (1323)
..|++||.-......--+|+. ...|.+++--|||++||.+...+ ...+|++-+.. ...+ .+..+...
T Consensus 146 ---g~irvWDl~~~~c~~~liPe~-~~~i~sl~v~~dgsml~a~nnkG---~cyvW~l~~~~-~~s~l~P~~k~~ah~~~ 217 (311)
T KOG0315|consen 146 ---GNIRVWDLGENSCTHELIPED-DTSIQSLTVMPDGSMLAAANNKG---NCYVWRLLNHQ-TASELEPVHKFQAHNGH 217 (311)
T ss_pred ---CcEEEEEccCCccccccCCCC-CcceeeEEEcCCCcEEEEecCCc---cEEEEEccCCC-ccccceEhhheecccce
Confidence 469999953222222123333 35799999999999999998887 89999987621 1111 11122122
Q ss_pred cEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeee-cCCCCEEEEEEe
Q 000736 322 GIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFY 400 (1323)
Q Consensus 322 ~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l-~~~~~V~~VaFS 400 (1323)
.....+||++.+ |+..+.|. ++++|....- + |-..++ .|..+|++.+||
T Consensus 218 il~C~lSPd~k~-lat~ssdk-------------------------tv~iwn~~~~-~---kle~~l~gh~rWvWdc~FS 267 (311)
T KOG0315|consen 218 ILRCLLSPDVKY-LATCSSDK-------------------------TVKIWNTDDF-F---KLELVLTGHQRWVWDCAFS 267 (311)
T ss_pred EEEEEECCCCcE-EEeecCCc-------------------------eEEEEecCCc-e---eeEEEeecCCceEEeeeec
Confidence 266777887765 44444333 3333322211 0 111123 367899999999
Q ss_pred cCCCCCEEEEEECCCcEEEEECCCCCcc
Q 000736 401 SKSSKNCLAAILSDGCLCVVDLPAPDML 428 (1323)
Q Consensus 401 pdg~~~~LAs~s~Dgti~lw~~~~~~~~ 428 (1323)
.|| .+|.++++|+++++|++......
T Consensus 268 ~dg--~YlvTassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 268 ADG--EYLVTASSDHTARLWDLSAGKEV 293 (311)
T ss_pred cCc--cEEEecCCCCceeecccccCcee
Confidence 999 99999999999999999865433
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-16 Score=187.24 Aligned_cols=446 Identities=15% Similarity=0.118 Sum_probs=265.4
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1323)
.++++||...++.|..+-.++.|-.|++. .+ |-... -+.+ -+...|-+++|+ +|..|-+.+.+|.|.-
T Consensus 27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~~--~~---w~~~~---vi~g---~~drsIE~L~W~-e~~RLFS~g~sg~i~E 94 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTDGNIEIWNLS--NN---WFLEP---VIHG---PEDRSIESLAWA-EGGRLFSSGLSGSITE 94 (691)
T ss_pred ceEEEEEeccCCceeeeccCCcEEEEccC--CC---ceeeE---EEec---CCCCceeeEEEc-cCCeEEeecCCceEEE
Confidence 79999999999999999889999999993 32 22110 0111 125789999999 5667778888999999
Q ss_pred EeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCcee-eeeeecccCCCceeccCccccCCCCeEEE
Q 000736 102 HSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLL-YENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1323)
Q Consensus 102 w~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~-~e~~l~~~~~~~~Vs~tqf~~~~~~i~~i 179 (1323)
||+.+.+.. ......+.||+|+.+|-+..|++++.||.+...+-.-+.+ +...+. -..+.+.++
T Consensus 95 wDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~--------------rq~sRvLsl 160 (691)
T KOG2048|consen 95 WDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLM--------------RQKSRVLSL 160 (691)
T ss_pred EecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecc--------------cccceEEEE
Confidence 999885543 3444457799999999999999999999665544332322 222221 123678999
Q ss_pred EEecCCcEEEEeeccccccCCCCEEEEEECCCCceeee--------eccCCCceeEEEEccCCCeEEEEecCCCCCCCCe
Q 000736 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS--------SELKAFMGAVLEWMPSGANIAAVYDRKSENKCPS 251 (1323)
Q Consensus 180 sWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t--------~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~ 251 (1323)
+|.|||..+| .|+. |+.||+||...|..... .+...-.|++|.|=.+| .||||.. .++
T Consensus 161 sw~~~~~~i~-~Gs~------Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS------~G~ 226 (691)
T KOG2048|consen 161 SWNPTGTKIA-GGSI------DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDS------AGT 226 (691)
T ss_pred EecCCccEEE-eccc------CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecC------Cce
Confidence 9999999888 6654 58999999988876652 11123345666665555 5676644 468
Q ss_pred EEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCe-eEEEeEEEEecCCcEEEEEcc
Q 000736 252 IVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH-WYLKYEIRYLRRDGIRFMWHP 329 (1323)
Q Consensus 252 V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~-wylkq~l~~~~~~~~~v~Wsp 329 (1323)
|.|||. +|.....+.. +...|.+|+=++++..+.+++-|++ ++++-...|.. |.......+|..+..+++-.+
T Consensus 227 V~FWd~~~gTLiqS~~~---h~adVl~Lav~~~~d~vfsaGvd~~--ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~ 301 (691)
T KOG2048|consen 227 VTFWDSIFGTLIQSHSC---HDADVLALAVADNEDRVFSAGVDPK--IIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIE 301 (691)
T ss_pred EEEEcccCcchhhhhhh---hhcceeEEEEcCCCCeEEEccCCCc--eEEEEecCCccceeeeccccCCcccceeeeeec
Confidence 999994 4433332222 3567999999999999999998882 44444444422 533222233333433333222
Q ss_pred CCCcEEEEEecCCcEEEEE--------EE-EeeeeCCC--------eeEEEEeCCEEEEeecCCcCCCC---C---ceee
Q 000736 330 TKPLQLICWTLDGQITTYN--------FI-WTTAVMEN--------STALVIDGSKILVTPLSLSLMPP---P---MYLF 386 (1323)
Q Consensus 330 ~~~~~L~~~~~~g~~~~~~--------~~-~~~~~~d~--------~~v~viDg~~l~lt~l~~~~vPp---p---m~~~ 386 (1323)
. .|..+..|+.+.+.. .. -.+.+... .+...+-...+.+|.+. ..+|. + ++..
T Consensus 302 ~---~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlG-S~~~~g~~~~~~Llkl 377 (691)
T KOG2048|consen 302 N---ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLG-SVILQGEYNYIHLLKL 377 (691)
T ss_pred c---eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceecc-CcccccccChhhheee
Confidence 2 122222222221100 00 00001111 12222333333333332 22222 1 2222
Q ss_pred eecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCCCCcc---------ccc----------cCCc-eeEe-------
Q 000736 387 SLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDML---------EDL----------EGTE-FVVE------- 439 (1323)
Q Consensus 387 ~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~---------~~~----------~g~~-~~~~------- 439 (1323)
.++-...|.+-+.||+| +.||.++.. .++||.+...... ..+ .++. |.+.
T Consensus 378 ~~k~~~nIs~~aiSPdg--~~Ia~st~~-~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le 454 (691)
T KOG2048|consen 378 FTKEKENISCAAISPDG--NLIAISTVS-RTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLE 454 (691)
T ss_pred ecCCccceeeeccCCCC--CEEEEeecc-ceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeE
Confidence 23346678999999999 899988643 4555555320000 000 0000 0000
Q ss_pred ------------eecc-ccccCcEEEEEEecCCeEEEEEecCCCCeeEEEEeecccCccccchhhhhhhhcccccccccc
Q 000736 440 ------------ACIS-ETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLL 506 (1323)
Q Consensus 440 ------------~~~~-~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 506 (1323)
..+. ....+.+.+++-+++|.++|+.+.. ..+.+|++. +
T Consensus 455 ~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~--g~I~v~nl~--~------------------------ 506 (691)
T KOG2048|consen 455 EFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTR--GQIFVYNLE--T------------------------ 506 (691)
T ss_pred EEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEecc--ceEEEEEcc--c------------------------
Confidence 0000 1122478899999999999987743 456666652 1
Q ss_pred cccccceeeeee-cccCCcEEEEeeCCCCCceEEEEeeCCeEEEEecc
Q 000736 507 TCAGWHAKVSTQ-IPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSR 553 (1323)
Q Consensus 507 ~~~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~~~~q~~dG~v~~~~~~ 553 (1323)
...... ..++..|+....+|.+.+.+++.+.|++|++|+..
T Consensus 507 ------~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~ 548 (691)
T KOG2048|consen 507 ------LESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIE 548 (691)
T ss_pred ------ceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEecc
Confidence 001111 24456778888887688999999999999999763
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.7e-18 Score=200.14 Aligned_cols=367 Identities=14% Similarity=0.101 Sum_probs=243.6
Q ss_pred cceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEE
Q 000736 21 EILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1323)
Q Consensus 21 ~~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~ 100 (1323)
+.+....|-+++-.|.++|.|++++.|-+ ..+.+.|... +--|-.+. ..+.-.+..|+|++..++.-+..|-.+
T Consensus 268 DWV~sv~W~p~~~~LLSASaDksmiiW~p--d~~tGiWv~~-vRlGe~gg---~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 268 DWVYSVWWHPEGLDLLSASADKSMIIWKP--DENTGIWVDV-VRLGEVGG---SAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred cceEEEEEccchhhheecccCcceEEEec--CCccceEEEE-EEeecccc---cccceeeEEEcCCCCEEEEecccCcEE
Confidence 37888899999999999999999999999 5555555422 11111110 023468899999999999989999999
Q ss_pred EEeCCC-CeE---EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeec-----CceeeeeeecccC---------CCc
Q 000736 101 LHSVDG-NAT---EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-----WDLLYENPLEELA---------EGF 162 (1323)
Q Consensus 101 lw~~~~-~~~---e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~-----~d~~~e~~l~~~~---------~~~ 162 (1323)
+|.... ..+ ...+.|-++|..++|+|.|++|.++|.|.|-+++.+- |--+..-++|..+ ..+
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~ 421 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ 421 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence 998322 221 2344567899999999999999999999999887542 2211111111111 111
Q ss_pred eec-----------------------------------------------------------------------------
Q 000736 163 DVH----------------------------------------------------------------------------- 165 (1323)
Q Consensus 163 ~Vs----------------------------------------------------------------------------- 165 (1323)
+||
T Consensus 422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ 501 (764)
T KOG1063|consen 422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT 501 (764)
T ss_pred eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence 222
Q ss_pred ----cCccc------------cCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEE
Q 000736 166 ----EPELS------------SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLE 229 (1323)
Q Consensus 166 ----~tqf~------------~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~sla 229 (1323)
|.|.+ ||.-.+.+++-+|+|+++| ++.-.. ......|++|++.+-...+.+++|+-.|+.|+
T Consensus 502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliA-SaCKS~-~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~ 579 (764)
T KOG1063|consen 502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIA-SACKSS-LKEHAVIRLWNTANWLQVQELEGHSLTVTRLA 579 (764)
T ss_pred CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEe-ehhhhC-CccceEEEEEeccchhhhheecccceEEEEEE
Confidence 00000 7888999999999999999 432110 12346799999966666667889999999999
Q ss_pred EccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec--cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCC
Q 000736 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN--EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1323)
Q Consensus 230 wsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~--~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~ 307 (1323)
|||||++|+++++|. ++.+|++......+|... ..|..-|++..|+||+..+|+++.|+ +|++|...+.
T Consensus 580 FSpdg~~LLsvsRDR------t~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK---~VkVW~~~~~ 650 (764)
T KOG1063|consen 580 FSPDGRYLLSVSRDR------TVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDK---KVKVWEEPDL 650 (764)
T ss_pred ECCCCcEEEEeecCc------eEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCc---eEEEEeccCc
Confidence 999999999999974 699998632222333321 34456699999999999999999999 9999999865
Q ss_pred e-eEEEe--EEEEecCCc-EEEEEcc----CCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCC
Q 000736 308 H-WYLKY--EIRYLRRDG-IRFMWHP----TKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLM 379 (1323)
Q Consensus 308 ~-wylkq--~l~~~~~~~-~~v~Wsp----~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~v 379 (1323)
. -|..+ .+.+ ... +.+.|.| +....+.++...|.+..+.+ ... +....+ |...+ +.+.
T Consensus 651 ~d~~i~~~a~~~~--~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~--~~~-~~~~~~----~~~~~--~~~l--- 716 (764)
T KOG1063|consen 651 RDKYISRFACLKF--SLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRR--KRE-HRQVTV----GTFNL--DTRL--- 716 (764)
T ss_pred hhhhhhhhchhcc--CCceeeEEeeccccccccceEEEEecccEEEEEec--ccc-cccccc----eeeee--cccc---
Confidence 1 12222 1222 222 6677665 33446788888888864432 111 010000 00000 1111
Q ss_pred CCCceeeeecCCCCEEEEEEecCCC--------CCEEEEEECCCcEEEEECC
Q 000736 380 PPPMYLFSLKFPTAVTEMAFYSKSS--------KNCLAAILSDGCLCVVDLP 423 (1323)
Q Consensus 380 Pppm~~~~l~~~~~V~~VaFSpdg~--------~~~LAs~s~Dgti~lw~~~ 423 (1323)
++ ++.+.+.|+.+.|+|.-+ .-.||+++.|.++++++++
T Consensus 717 ~~-----~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 717 CA-----TIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred cc-----ccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 22 233567899999997721 1457999999999999874
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-17 Score=172.43 Aligned_cols=288 Identities=16% Similarity=0.095 Sum_probs=203.8
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCC------C-----C-----eEEEeceecCcEEEEEEcCCCCeEEEEeCCc
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVD------G-----N-----ATEVVGRVEGGVRFISPSPDGDLLGVTTGFG 138 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~------~-----~-----~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~ 138 (1323)
...|.+|+|+|.|...|+||.+.+.++.... . . .++.-.+|.+.|.|.+|||+|++||+++.|+
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk 111 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK 111 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence 4689999999999999999999999986421 1 0 1233456789999999999999999999999
Q ss_pred cEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecC----CcEEEEeeccccccCCCCEEEEEECCCCce
Q 000736 139 QILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD----GKYFATLSEFCNSSKLHKRLKVWERDSGTL 214 (1323)
Q Consensus 139 tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspD----G~~lAtvss~d~~~~~d~~IrVWd~~~G~l 214 (1323)
+|++|--+-+. ...... +..|.-|++.|..++|--| |..|| +++ .+|+.|.+-|-.+|+-
T Consensus 112 ~ik~l~fn~dt--~~~~g~--------dle~nmhdgtirdl~fld~~~s~~~il~-s~g-----agdc~iy~tdc~~g~~ 175 (350)
T KOG0641|consen 112 TIKVLPFNADT--CNATGH--------DLEFNMHDGTIRDLAFLDDPESGGAILA-SAG-----AGDCKIYITDCGRGQG 175 (350)
T ss_pred eEEEEeccccc--ccccCc--------ceeeeecCCceeeeEEecCCCcCceEEE-ecC-----CCcceEEEeecCCCCc
Confidence 99997422121 111000 1235567888899999543 56787 543 3678898888888998
Q ss_pred eeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec--cC----CCCcEEEEEEccCCCeeE
Q 000736 215 QASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN--EQ----IDSTVELLKWNCMSDLLA 288 (1323)
Q Consensus 215 ~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~--~~----~~~~V~~laWSpDg~~LA 288 (1323)
.....+|.|.+-++ ++=+|.++||++.|+ +|+||+..-.. ..-++. .+ ....|.+++-.|.|++||
T Consensus 176 ~~a~sghtghilal-yswn~~m~~sgsqdk------tirfwdlrv~~-~v~~l~~~~~~~glessavaav~vdpsgrll~ 247 (350)
T KOG0641|consen 176 FHALSGHTGHILAL-YSWNGAMFASGSQDK------TIRFWDLRVNS-CVNTLDNDFHDGGLESSAVAAVAVDPSGRLLA 247 (350)
T ss_pred ceeecCCcccEEEE-EEecCcEEEccCCCc------eEEEEeeeccc-eeeeccCcccCCCcccceeEEEEECCCcceee
Confidence 88888999988665 333689999999874 69999942100 000111 01 135699999999999999
Q ss_pred EEEccCCCCeEEEEEeeCCeeEEEeEEEEecC--CcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeC
Q 000736 289 AVVRFEEYDSVKICFFSNNHWYLKYEIRYLRR--DGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDG 366 (1323)
Q Consensus 289 ~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~--~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg 366 (1323)
++-.|. .-.|+|+....- .| +|++. +..++.|+|...+.| ..+ =+
T Consensus 248 sg~~ds---sc~lydirg~r~--iq--~f~phsadir~vrfsp~a~yll-t~s-------------------------yd 294 (350)
T KOG0641|consen 248 SGHADS---SCMLYDIRGGRM--IQ--RFHPHSADIRCVRFSPGAHYLL-TCS-------------------------YD 294 (350)
T ss_pred eccCCC---ceEEEEeeCCce--ee--eeCCCccceeEEEeCCCceEEE-Eec-------------------------cc
Confidence 999998 899999986642 23 34443 448899999654422 111 12
Q ss_pred CEEEEeecCCcCC--CCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECC
Q 000736 367 SKILVTPLSLSLM--PPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1323)
Q Consensus 367 ~~l~lt~l~~~~v--Pppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~ 423 (1323)
..|++|++.+... -|-|- .-+|.+.+..+.|+|.. -.+.+.+.|.++.||.++
T Consensus 295 ~~ikltdlqgdla~el~~~v--v~ehkdk~i~~rwh~~d--~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 295 MKIKLTDLQGDLAHELPIMV--VAEHKDKAIQCRWHPQD--FSFISSSADKTATLWALN 349 (350)
T ss_pred ceEEEeecccchhhcCceEE--EEeccCceEEEEecCcc--ceeeeccCcceEEEeccC
Confidence 3577777765432 12222 23688999999999997 778899999999999875
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-17 Score=184.42 Aligned_cols=323 Identities=14% Similarity=0.141 Sum_probs=230.0
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1323)
.+-+++.+|....+.++++|..-+.|+. .+++.. .. +.+| .+.|+++.||-||.+||+|.-+|.|++
T Consensus 66 svFavsl~P~~~l~aTGGgDD~AflW~~--~~ge~~--~e-----ltgH----KDSVt~~~FshdgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATGGGDDLAFLWDI--STGEFA--GE-----LTGH----KDSVTCCSFSHDGTLLATGDMSGKVLV 132 (399)
T ss_pred ceEEEEeCCCCceEEecCCCceEEEEEc--cCCcce--eE-----ecCC----CCceEEEEEccCceEEEecCCCccEEE
Confidence 5777888997888888888888999999 566631 11 5566 579999999999999999999999999
Q ss_pred EeCCCCeEE--EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEE
Q 000736 102 HSVDGNATE--VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1323)
Q Consensus 102 w~~~~~~~e--~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~i 179 (1323)
|..+++..+ +.+. -+.|.-+.|.|-+.+|+.|+.||.|-+|...-.. .. ..|.+|...+.+=
T Consensus 133 ~~~stg~~~~~~~~e-~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~-~~--------------kv~~Gh~~~ct~G 196 (399)
T KOG0296|consen 133 FKVSTGGEQWKLDQE-VEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA-LC--------------KVMSGHNSPCTCG 196 (399)
T ss_pred EEcccCceEEEeecc-cCceEEEEecccccEEEeecCCCcEEEEECCCcc-ee--------------eEecCCCCCcccc
Confidence 999987543 4433 3568889999999999999999999888532110 00 1133666777888
Q ss_pred EEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCc-eeEEEEccCCCeEEEEecCCC----CCCCCeEEE
Q 000736 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFM-GAVLEWMPSGANIAAVYDRKS----ENKCPSIVF 254 (1323)
Q Consensus 180 sWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~-v~slawsPdG~lIAs~s~d~~----~~~~~~V~~ 254 (1323)
.|.|||+.++ ++.. +++|++||..+|+.+.......+. -..++++-.|.++.+|+.+.. ......|++
T Consensus 197 ~f~pdGKr~~-tgy~------dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~ 269 (399)
T KOG0296|consen 197 EFIPDGKRIL-TGYD------DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVN 269 (399)
T ss_pred cccCCCceEE-EEec------CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEE
Confidence 8999999999 6643 589999999999887765433333 378889999999888877532 111233444
Q ss_pred EeCC-CeeEEEEEec-cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCC
Q 000736 255 YERN-GLERSSFDIN-EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKP 332 (1323)
Q Consensus 255 ~e~n-Gl~~~~f~l~-~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~ 332 (1323)
...+ +-.. ... ......|.++.||.+=.+.|+|+-|+ +|-|||... |.+.+... ++...+.+.|.+ .+
T Consensus 270 ~~n~~~~~l---~~~~e~~~esve~~~~ss~lpL~A~G~vdG---~i~iyD~a~--~~~R~~c~-he~~V~~l~w~~-t~ 339 (399)
T KOG0296|consen 270 CNNGTVPEL---KPSQEELDESVESIPSSSKLPLAACGSVDG---TIAIYDLAA--STLRHICE-HEDGVTKLKWLN-TD 339 (399)
T ss_pred ecCCCCccc---cccchhhhhhhhhcccccccchhhcccccc---eEEEEeccc--chhheecc-CCCceEEEEEcC-cc
Confidence 3331 1100 000 11235688888999999999999999 999999865 33333221 222238899998 44
Q ss_pred cEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEE
Q 000736 333 LQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAI 411 (1323)
Q Consensus 333 ~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l-~~~~~V~~VaFSpdg~~~~LAs~ 411 (1323)
. |...+.+|.+. .|+ -|.+ .+.+++ .|...|.+.+.+|+. +.+.++
T Consensus 340 ~-l~t~c~~g~v~----~wD---------------------aRtG-----~l~~~y~GH~~~Il~f~ls~~~--~~vvT~ 386 (399)
T KOG0296|consen 340 Y-LLTACANGKVR----QWD---------------------ARTG-----QLKFTYTGHQMGILDFALSPQK--RLVVTV 386 (399)
T ss_pred h-heeeccCceEE----eee---------------------cccc-----ceEEEEecCchheeEEEEcCCC--cEEEEe
Confidence 4 55556566553 232 2222 122344 588899999999999 999999
Q ss_pred ECCCcEEEEECC
Q 000736 412 LSDGCLCVVDLP 423 (1323)
Q Consensus 412 s~Dgti~lw~~~ 423 (1323)
+.|++.++|+.+
T Consensus 387 s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 387 SDDNTALVFEVP 398 (399)
T ss_pred cCCCeEEEEecC
Confidence 999999999875
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.6e-17 Score=186.17 Aligned_cols=271 Identities=12% Similarity=0.081 Sum_probs=170.3
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEE-EeceecCcEEEEEEcCCCCeE-EEEeCCccEEEEee-cCceeeeeeecccCCCcee
Q 000736 88 EALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLL-GVTTGFGQILVMTH-DWDLLYENPLEELAEGFDV 164 (1323)
Q Consensus 88 ~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDG~~L-A~~s~d~tV~l~t~-~~d~~~e~~l~~~~~~~~V 164 (1323)
..+++++.||+|.+||..++++. .+.. ...+.+++|+|||+.| ++++.+++|.+|+. ..........+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~-~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-------- 72 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPV-GQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG-------- 72 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEEC-CCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC--------
Confidence 56788999999999999876543 3332 3457889999999987 55677889998863 22222211111
Q ss_pred ccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCC
Q 000736 165 HEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRK 244 (1323)
Q Consensus 165 s~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~ 244 (1323)
.....++|+|||++++ ++. ..++.+++||..+++.....+. .....+++|+|+|+++++++.+.
T Consensus 73 ---------~~~~~~~~~~~g~~l~-~~~-----~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~ 136 (300)
T TIGR03866 73 ---------PDPELFALHPNGKILY-IAN-----EDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETT 136 (300)
T ss_pred ---------CCccEEEECCCCCEEE-EEc-----CCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCC
Confidence 1235789999999876 443 2357999999977777666542 22357899999999999887642
Q ss_pred CCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEE-ccCCCCeEEEEEeeCCeeEEEeEEEEecC---
Q 000736 245 SENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVV-RFEEYDSVKICFFSNNHWYLKYEIRYLRR--- 320 (1323)
Q Consensus 245 ~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~-~d~~~~~V~LW~~~n~~wylkq~l~~~~~--- 320 (1323)
..+.+|+.+....-. .+.. ...+..++|+|||+.|++++ .++ .|++|+..+.... ..+.+...
T Consensus 137 -----~~~~~~d~~~~~~~~-~~~~--~~~~~~~~~s~dg~~l~~~~~~~~---~v~i~d~~~~~~~--~~~~~~~~~~~ 203 (300)
T TIGR03866 137 -----NMAHFIDTKTYEIVD-NVLV--DQRPRFAEFTADGKELWVSSEIGG---TVSVIDVATRKVI--KKITFEIPGVH 203 (300)
T ss_pred -----CeEEEEeCCCCeEEE-EEEc--CCCccEEEECCCCCEEEEEcCCCC---EEEEEEcCcceee--eeeeecccccc
Confidence 356677865322211 1111 22456899999999886654 355 8999999875421 22322110
Q ss_pred ----CcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEE
Q 000736 321 ----DGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTE 396 (1323)
Q Consensus 321 ----~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~~~~~V~~ 396 (1323)
....+.|+|++.. +.+... +.+.+.+|+...+.+ ...+.+...+.+
T Consensus 204 ~~~~~~~~i~~s~dg~~-~~~~~~------------------------~~~~i~v~d~~~~~~-----~~~~~~~~~~~~ 253 (300)
T TIGR03866 204 PEAVQPVGIKLTKDGKT-AFVALG------------------------PANRVAVVDAKTYEV-----LDYLLVGQRVWQ 253 (300)
T ss_pred cccCCccceEECCCCCE-EEEEcC------------------------CCCeEEEEECCCCcE-----EEEEEeCCCcce
Confidence 1135667777654 222111 111222222221100 011223456889
Q ss_pred EEEecCCCCCEEEEEE-CCCcEEEEECCCCCcc
Q 000736 397 MAFYSKSSKNCLAAIL-SDGCLCVVDLPAPDML 428 (1323)
Q Consensus 397 VaFSpdg~~~~LAs~s-~Dgti~lw~~~~~~~~ 428 (1323)
++|+|+| +.|+++. .+|+|.+|+..+..+.
T Consensus 254 ~~~~~~g--~~l~~~~~~~~~i~v~d~~~~~~~ 284 (300)
T TIGR03866 254 LAFTPDE--KYLLTTNGVSNDVSVIDVAALKVI 284 (300)
T ss_pred EEECCCC--CEEEEEcCCCCeEEEEECCCCcEE
Confidence 9999999 8888764 5899999999875443
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-18 Score=197.28 Aligned_cols=293 Identities=14% Similarity=0.146 Sum_probs=202.3
Q ss_pred ccccccc--ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCC--CCCEEEEEEecCCCEE
Q 000736 15 ELQSKDE--ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEP--GDSITAFDYLMEKEAL 90 (1323)
Q Consensus 15 ~~~~~~~--~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~V~~v~~spdg~~L 90 (1323)
+++.++. .+.++++|+-|-+++++|=|..+..||.. +- . +++++ ++. +.| +..|.+++|||.|.+|
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~---gM---d-as~~~-fr~--l~P~E~h~i~sl~ys~Tg~~i 229 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQ---GM---D-ASMRS-FRQ--LQPCETHQINSLQYSVTGDQI 229 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecc---cc---c-ccchh-hhc--cCcccccccceeeecCCCCeE
Confidence 4544443 68899999999999999999999999983 11 0 11111 222 234 5789999999999999
Q ss_pred EEEeCCCcEEEEeCCCCeE-EE-------------eceecCcEEEEEEcCCC-CeEEEEeCCccEEEEeecCceeeee-e
Q 000736 91 IVGTSSGLLLLHSVDGNAT-EV-------------VGRVEGGVRFISPSPDG-DLLGVTTGFGQILVMTHDWDLLYEN-P 154 (1323)
Q Consensus 91 a~as~dG~I~lw~~~~~~~-e~-------------vg~~~~~I~~~awSPDG-~~LA~~s~d~tV~l~t~~~d~~~e~-~ 154 (1323)
++++..-..+|+|.++.++ |+ .| |-..++|.+|.|+. +.+.+++.||++++|+-+ +..... -
T Consensus 230 Lvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKG-Hia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~-~~k~q~qV 307 (641)
T KOG0772|consen 230 LVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKG-HIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVN-NTKSQLQV 307 (641)
T ss_pred EEEecCcceeEEccCCceeeeeeccchhhhhhhccCC-ceeeeeccccccCcccceEEecCCCcEEEEecC-CchhheeE
Confidence 9999999999999998543 22 33 46789999999996 457788999999998632 111111 1
Q ss_pred ecccC-CCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCce----eeeeccCCC--ceeE
Q 000736 155 LEELA-EGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL----QASSELKAF--MGAV 227 (1323)
Q Consensus 155 l~~~~-~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l----~~t~e~~~~--~v~s 227 (1323)
+.+-. .++- -.+.+.+|+|||+.|| .+. .|+.|++|+. .+.. ...-..|.+ .+++
T Consensus 308 ik~k~~~g~R----------v~~tsC~~nrdg~~iA-agc------~DGSIQ~W~~-~~~~v~p~~~vk~AH~~g~~Its 369 (641)
T KOG0772|consen 308 IKTKPAGGKR----------VPVTSCAWNRDGKLIA-AGC------LDGSIQIWDK-GSRTVRPVMKVKDAHLPGQDITS 369 (641)
T ss_pred EeeccCCCcc----------cCceeeecCCCcchhh-hcc------cCCceeeeec-CCcccccceEeeeccCCCCceeE
Confidence 11111 1222 2568899999999999 553 4689999996 3222 222345666 6899
Q ss_pred EEEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec-cCCCCcEEEEEEccCCCeeEEEEccCC---CCeEEEEE
Q 000736 228 LEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN-EQIDSTVELLKWNCMSDLLAAVVRFEE---YDSVKICF 303 (1323)
Q Consensus 228 lawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~-~~~~~~V~~laWSpDg~~LA~~~~d~~---~~~V~LW~ 303 (1323)
|+||+||++|+|=+.| .++++|+...-..--+... .+....-...+||||-++|.+|.+-.. ..++.+++
T Consensus 370 i~FS~dg~~LlSRg~D------~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d 443 (641)
T KOG0772|consen 370 ISFSYDGNYLLSRGFD------DTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFD 443 (641)
T ss_pred EEeccccchhhhccCC------CceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEe
Confidence 9999999999998886 4699999421111000000 111223457899999999999876432 22788888
Q ss_pred eeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEE
Q 000736 304 FSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITT 346 (1323)
Q Consensus 304 ~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~ 346 (1323)
..++. ..+.|.++..+.+.+.|||--. +|.+++.||...+
T Consensus 444 ~~t~d--~v~ki~i~~aSvv~~~WhpkLN-Qi~~gsgdG~~~v 483 (641)
T KOG0772|consen 444 RMTLD--TVYKIDISTASVVRCLWHPKLN-QIFAGSGDGTAHV 483 (641)
T ss_pred cccee--eEEEecCCCceEEEEeecchhh-heeeecCCCceEE
Confidence 87764 5677777644448899999654 5888888988764
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-17 Score=182.98 Aligned_cols=328 Identities=15% Similarity=0.132 Sum_probs=222.3
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeE--EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeec-Cceee
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT--EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLLY 151 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~--e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~-~d~~~ 151 (1323)
.+.|-+++.+|+...+|+|+.|..-.||+..++.. ++.| |.+.|+|+.||.||.+||+|.-+|.|.+|... ....
T Consensus 64 ~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltg-HKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~- 141 (399)
T KOG0296|consen 64 TDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTG-HKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQ- 141 (399)
T ss_pred CCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecC-CCCceEEEEEccCceEEEecCCCccEEEEEcccCceE-
Confidence 57899999999999999999999999999988764 4666 58999999999999999999999999998422 1111
Q ss_pred eeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEc
Q 000736 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM 231 (1323)
Q Consensus 152 e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slaws 231 (1323)
..+. +.+ +.+.=+.|.|-+.+|+ .++ .|+.+-+|...++....++.+|...+++-.|.
T Consensus 142 -~~~~-----~e~---------~dieWl~WHp~a~ill-AG~------~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~ 199 (399)
T KOG0296|consen 142 -WKLD-----QEV---------EDIEWLKWHPRAHILL-AGS------TDGSVWMWQIPSQALCKVMSGHNSPCTCGEFI 199 (399)
T ss_pred -EEee-----ccc---------CceEEEEecccccEEE-eec------CCCcEEEEECCCcceeeEecCCCCCccccccc
Confidence 1111 011 3456799999999998 664 36899999997778888899999999999999
Q ss_pred cCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeE
Q 000736 232 PSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1323)
Q Consensus 232 PdG~lIAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wy 310 (1323)
|||++|+++..| .+|++|+. .|.. .+++..........++++.+|..+..+..++ .+.+-.-...+
T Consensus 200 pdGKr~~tgy~d------gti~~Wn~ktg~p--~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~---~~~~~~~~sgK-- 266 (399)
T KOG0296|consen 200 PDGKRILTGYDD------GTIIVWNPKTGQP--LHKITQAEGLELPCISLNLAGSTLTKGNSEG---VACGVNNGSGK-- 266 (399)
T ss_pred CCCceEEEEecC------ceEEEEecCCCce--eEEecccccCcCCccccccccceeEeccCCc---cEEEEccccce--
Confidence 999999999986 46999994 4522 2334322223455788889999888888877 44443332211
Q ss_pred EEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEE-EEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeec
Q 000736 311 LKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNF-IWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLK 389 (1323)
Q Consensus 311 lkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~-~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~ 389 (1323)
+.....|..|. |...... ......+ -|+.. -+...+...|| +|.+|++..+-+ .+..+
T Consensus 267 ------------Vv~~~n~~~~~-l~~~~e~-~~esve~~~~ss~-lpL~A~G~vdG-~i~iyD~a~~~~-----R~~c~ 325 (399)
T KOG0296|consen 267 ------------VVNCNNGTVPE-LKPSQEE-LDESVESIPSSSK-LPLAACGSVDG-TIAIYDLAASTL-----RHICE 325 (399)
T ss_pred ------------EEEecCCCCcc-ccccchh-hhhhhhhcccccc-cchhhcccccc-eEEEEecccchh-----heecc
Confidence 11111111111 0000000 0000000 01100 01111222344 456666654322 23457
Q ss_pred CCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCC
Q 000736 390 FPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGP 469 (1323)
Q Consensus 390 ~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~ 469 (1323)
|+..|..+-|-++ ..|++++.||+|+.||.-+..+..+..|| ...|..++.+|+.+++++++++
T Consensus 326 he~~V~~l~w~~t---~~l~t~c~~g~v~~wDaRtG~l~~~y~GH------------~~~Il~f~ls~~~~~vvT~s~D- 389 (399)
T KOG0296|consen 326 HEDGVTKLKWLNT---DYLLTACANGKVRQWDARTGQLKFTYTGH------------QMGILDFALSPQKRLVVTVSDD- 389 (399)
T ss_pred CCCceEEEEEcCc---chheeeccCceEEeeeccccceEEEEecC------------chheeEEEEcCCCcEEEEecCC-
Confidence 8899999999995 58999999999999999877666455554 4578999999999999998886
Q ss_pred CCeeEEEE
Q 000736 470 RHSNYFRG 477 (1323)
Q Consensus 470 ~~~~~~~~ 477 (1323)
+...++.
T Consensus 390 -~~a~VF~ 396 (399)
T KOG0296|consen 390 -NTALVFE 396 (399)
T ss_pred -CeEEEEe
Confidence 4555543
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.5e-18 Score=183.44 Aligned_cols=290 Identities=16% Similarity=0.151 Sum_probs=186.8
Q ss_pred cccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe------EE-EeceecCcEEEEEEcCCCCeEEEEeCCc-
Q 000736 67 IEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA------TE-VVGRVEGGVRFISPSPDGDLLGVTTGFG- 138 (1323)
Q Consensus 67 ~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~------~e-~vg~~~~~I~~~awSPDG~~LA~~s~d~- 138 (1323)
|++| ++.|++++||.||+.||+++.||+|+||+++.-+ +. .+. -+.-+.++|+||.+-+++.-..|
T Consensus 82 LKgH----~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve--~dhpT~V~FapDc~s~vv~~~~g~ 155 (420)
T KOG2096|consen 82 LKGH----KKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE--YDHPTRVVFAPDCKSVVVSVKRGN 155 (420)
T ss_pred hhcc----CCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc--CCCceEEEECCCcceEEEEEccCC
Confidence 4555 6799999999999999999999999999997511 11 122 12467899999998877665433
Q ss_pred cEEEEe--ecCceeeeeeecccCCCceeccCccc-cCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCcee
Q 000736 139 QILVMT--HDWDLLYENPLEELAEGFDVHEPELS-SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQ 215 (1323)
Q Consensus 139 tV~l~t--~~~d~~~e~~l~~~~~~~~Vs~tqf~-~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~ 215 (1323)
++.++. +.-|- ..++ +.-++....|+ -|.-.+..|..-+.|+|++ +++. +.+|.+|+. .|+++
T Consensus 156 ~l~vyk~~K~~dG--~~~~----~~v~~D~~~f~~kh~v~~i~iGiA~~~k~im-sas~------dt~i~lw~l-kGq~L 221 (420)
T KOG2096|consen 156 KLCVYKLVKKTDG--SGSH----HFVHIDNLEFERKHQVDIINIGIAGNAKYIM-SASL------DTKICLWDL-KGQLL 221 (420)
T ss_pred EEEEEEeeecccC--CCCc----ccccccccccchhcccceEEEeecCCceEEE-EecC------CCcEEEEec-CCcee
Confidence 454431 11110 0000 01111111222 3445667888899999999 4433 579999999 69988
Q ss_pred eeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeC----CCeeE---EEEEeccCCCCcEEEEEEccCCCeeE
Q 000736 216 ASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER----NGLER---SSFDINEQIDSTVELLKWNCMSDLLA 288 (1323)
Q Consensus 216 ~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~----nGl~~---~~f~l~~~~~~~V~~laWSpDg~~LA 288 (1323)
.+-..........+-||+|++||+++.- .+|.+||. .|.-. .-|.|.+| ...|.+++|||+|+..+
T Consensus 222 ~~idtnq~~n~~aavSP~GRFia~~gFT------pDVkVwE~~f~kdG~fqev~rvf~LkGH-~saV~~~aFsn~S~r~v 294 (420)
T KOG2096|consen 222 QSIDTNQSSNYDAAVSPDGRFIAVSGFT------PDVKVWEPIFTKDGTFQEVKRVFSLKGH-QSAVLAAAFSNSSTRAV 294 (420)
T ss_pred eeeccccccccceeeCCCCcEEEEecCC------CCceEEEEEeccCcchhhhhhhheeccc-hhheeeeeeCCCcceeE
Confidence 8755444444678999999999999984 57999984 44211 12445554 56799999999999999
Q ss_pred EEEccCCCCeEEEEEeeC-CeeEEEeE---EE-E----ec--CCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCC
Q 000736 289 AVVRFEEYDSVKICFFSN-NHWYLKYE---IR-Y----LR--RDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVME 357 (1323)
Q Consensus 289 ~~~~d~~~~~V~LW~~~n-~~wylkq~---l~-~----~~--~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d 357 (1323)
+.+.|+ +++|||++- || ++|. +. + +. .++..+.-+|++.
T Consensus 295 tvSkDG---~wriwdtdVrY~--~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~------------------------- 344 (420)
T KOG2096|consen 295 TVSKDG---KWRIWDTDVRYE--AGQDPKILKEGSAPLHAAGSEPVRLELSPSGD------------------------- 344 (420)
T ss_pred EEecCC---cEEEeeccceEe--cCCCchHhhcCCcchhhcCCCceEEEeCCCCc-------------------------
Confidence 999999 999999862 32 1111 00 0 00 0112222333222
Q ss_pred CeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEE
Q 000736 358 NSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1323)
Q Consensus 358 ~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~ 421 (1323)
..++.-|..|++..-+....-|.. +--|...|.+++|+|+| +.+|+. .|..+++..
T Consensus 345 --~lA~s~gs~l~~~~se~g~~~~~~---e~~h~~~Is~is~~~~g--~~~atc-Gdr~vrv~~ 400 (420)
T KOG2096|consen 345 --SLAVSFGSDLKVFASEDGKDYPEL---EDIHSTTISSISYSSDG--KYIATC-GDRYVRVIR 400 (420)
T ss_pred --EEEeecCCceEEEEcccCccchhH---HHhhcCceeeEEecCCC--cEEeee-cceeeeeec
Confidence 334455666665544433332211 11378899999999999 888887 577888775
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-17 Score=204.91 Aligned_cols=243 Identities=14% Similarity=0.109 Sum_probs=157.3
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEeCCC----------CeE----EEeceecCcEEEEEEcC-CCCeEEEEeCCccEEE
Q 000736 78 ITAFDYLMEKEALIVGTSSGLLLLHSVDG----------NAT----EVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILV 142 (1323)
Q Consensus 78 V~~v~~spdg~~La~as~dG~I~lw~~~~----------~~~----e~vg~~~~~I~~~awSP-DG~~LA~~s~d~tV~l 142 (1323)
|....+++|+..++.++.+.....|+..+ ++. ..+..|.+.|++++||| |+++||+++.|++|++
T Consensus 23 i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkI 102 (493)
T PTZ00421 23 VTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMG 102 (493)
T ss_pred cccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence 34444555655555555555444554433 221 12334688999999999 9999999999999999
Q ss_pred EeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCC-cEEEEeeccccccCCCCEEEEEECCCCceeeeeccC
Q 000736 143 MTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDG-KYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK 221 (1323)
Q Consensus 143 ~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG-~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~ 221 (1323)
|+..-....... ...+ ..+.+|...|.+++|+|++ .+|| +++ .|++|+|||.++|+...++..|
T Consensus 103 Wdi~~~~~~~~~------~~~l--~~L~gH~~~V~~l~f~P~~~~iLa-Sgs------~DgtVrIWDl~tg~~~~~l~~h 167 (493)
T PTZ00421 103 WGIPEEGLTQNI------SDPI--VHLQGHTKKVGIVSFHPSAMNVLA-SAG------ADMVVNVWDVERGKAVEVIKCH 167 (493)
T ss_pred EecCCCcccccc------Ccce--EEecCCCCcEEEEEeCcCCCCEEE-EEe------CCCEEEEEECCCCeEEEEEcCC
Confidence 864211100000 0000 1244778889999999986 6888 554 3689999999899998888889
Q ss_pred CCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccC-CCCeE
Q 000736 222 AFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE-EYDSV 299 (1323)
Q Consensus 222 ~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~-~~~~V 299 (1323)
...+.+++|+|+|++||+++.| ..|++||. +|..... +..+....+..+.|+|++..|++++.++ ...+|
T Consensus 168 ~~~V~sla~spdG~lLatgs~D------g~IrIwD~rsg~~v~t--l~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~V 239 (493)
T PTZ00421 168 SDQITSLEWNLDGSLLCTTSKD------KKLNIIDPRDGTIVSS--VEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQI 239 (493)
T ss_pred CCceEEEEEECCCCEEEEecCC------CEEEEEECCCCcEEEE--EecCCCCcceEEEEcCCCCeEEEEecCCCCCCeE
Confidence 9999999999999999999986 46999994 4543332 3333333456788999988877665321 12289
Q ss_pred EEEEeeCCeeEEEeEEEEecCCc-EEEEEccCCCcEEEEEe-cCCcEE
Q 000736 300 KICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWT-LDGQIT 345 (1323)
Q Consensus 300 ~LW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~~~~~L~~~~-~~g~~~ 345 (1323)
+|||..+...-+ .....+.... ....|+|++.. |+++. .||.+.
T Consensus 240 klWDlr~~~~p~-~~~~~d~~~~~~~~~~d~d~~~-L~lggkgDg~Ir 285 (493)
T PTZ00421 240 MLWDTRKMASPY-STVDLDQSSALFIPFFDEDTNL-LYIGSKGEGNIR 285 (493)
T ss_pred EEEeCCCCCCce-eEeccCCCCceEEEEEcCCCCE-EEEEEeCCCeEE
Confidence 999998643211 1111222222 44567877764 44443 355443
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-17 Score=180.82 Aligned_cols=285 Identities=13% Similarity=0.139 Sum_probs=200.1
Q ss_pred EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEE
Q 000736 110 EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFA 189 (1323)
Q Consensus 110 e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lA 189 (1323)
+...+|++.|..+.|+|||..||+++.|..|.+|+-..|.-.-..+ ++|.+.|..+.|.+||..+.
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~l--------------kgHsgAVM~l~~~~d~s~i~ 106 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVL--------------KGHSGAVMELHGMRDGSHIL 106 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeee--------------ccccceeEeeeeccCCCEEE
Confidence 3445579999999999999999999999999999755543221111 26778899999999999998
Q ss_pred EeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCC-eEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec
Q 000736 190 TLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYERNGLERSSFDIN 268 (1323)
Q Consensus 190 tvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~-lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~ 268 (1323)
++| .|++|++||.++|+.......|..-++++.=+--|. +|.|+++| .++++||.-- .+ .++
T Consensus 107 S~g-------tDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD------~t~kl~D~R~---k~-~~~ 169 (338)
T KOG0265|consen 107 SCG-------TDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDD------GTLKLWDIRK---KE-AIK 169 (338)
T ss_pred Eec-------CCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCC------ceEEEEeecc---cc-hhh
Confidence 443 369999999999999999999999999988333343 66777776 4699999421 11 111
Q ss_pred c-CCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEE
Q 000736 269 E-QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTY 347 (1323)
Q Consensus 269 ~-~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~ 347 (1323)
. +....+.++.|+-+|+...+|+-|. .||+||..+.+- .+.+.+|.+..+.+.-+|++.. +..-..|..+
T Consensus 170 t~~~kyqltAv~f~d~s~qv~sggIdn---~ikvWd~r~~d~--~~~lsGh~DtIt~lsls~~gs~-llsnsMd~tv--- 240 (338)
T KOG0265|consen 170 TFENKYQLTAVGFKDTSDQVISGGIDN---DIKVWDLRKNDG--LYTLSGHADTITGLSLSRYGSF-LLSNSMDNTV--- 240 (338)
T ss_pred ccccceeEEEEEecccccceeeccccC---ceeeeccccCcc--eEEeecccCceeeEEeccCCCc-cccccccceE---
Confidence 1 1234689999999999999999988 799999965542 3466666544577888888765 2122222222
Q ss_pred EEEEeeeeC--CCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCCC
Q 000736 348 NFIWTTAVM--ENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1323)
Q Consensus 348 ~~~~~~~~~--d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~ 425 (1323)
-+|++.|- ....+.+--|.. ..+.-+....+|||++ +.+.+++.|..+++|+....
T Consensus 241 -rvwd~rp~~p~~R~v~if~g~~-------------------hnfeknlL~cswsp~~--~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 241 -RVWDVRPFAPSQRCVKIFQGHI-------------------HNFEKNLLKCSWSPNG--TKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred -EEEEecccCCCCceEEEeecch-------------------hhhhhhcceeeccCCC--CccccccccceEEEeecccc
Confidence 23443311 111122222211 1123345678999999 89999999999999998764
Q ss_pred CccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecC
Q 000736 426 DMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHG 468 (1323)
Q Consensus 426 ~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~ 468 (1323)
..+--++| +.+.|.++.|.|...++.+++.+
T Consensus 299 ~~lyklpG------------h~gsvn~~~Fhp~e~iils~~sd 329 (338)
T KOG0265|consen 299 RILYKLPG------------HYGSVNEVDFHPTEPIILSCSSD 329 (338)
T ss_pred cEEEEcCC------------cceeEEEeeecCCCcEEEEeccC
Confidence 43322333 45689999999999999887765
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-17 Score=202.74 Aligned_cols=260 Identities=17% Similarity=0.286 Sum_probs=196.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1323)
..+.++||++|+.|++|+.|+.|..|+-++ -+ ..|..+. . .+..|.++ .-++..|++++.+++|..
T Consensus 15 G~t~i~~d~~gefi~tcgsdg~ir~~~~~s--d~------e~P~ti~---~-~g~~v~~i--a~~s~~f~~~s~~~tv~~ 80 (933)
T KOG1274|consen 15 GLTLICYDPDGEFICTCGSDGDIRKWKTNS--DE------EEPETID---I-SGELVSSI--ACYSNHFLTGSEQNTVLR 80 (933)
T ss_pred ceEEEEEcCCCCEEEEecCCCceEEeecCC--cc------cCCchhh---c-cCceeEEE--eecccceEEeeccceEEE
Confidence 478899999999999999999999998841 11 1111111 0 13455555 445669999999999999
Q ss_pred EeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEE
Q 000736 102 HSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1323)
Q Consensus 102 w~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~is 180 (1323)
|....++.. ++..+.-.++++++|-+|+++|.||.|-.|++.+.+ |.-.+. .+.+|+..|.+++
T Consensus 81 y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~-D~s~~~--------------~lrgh~apVl~l~ 145 (933)
T KOG1274|consen 81 YKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLD-DSSQEK--------------VLRGHDAPVLQLS 145 (933)
T ss_pred eeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEecc-ccchhe--------------eecccCCceeeee
Confidence 999887655 667778899999999999999999999999886432 222222 2347888999999
Q ss_pred EecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccC--------CCceeEEEEccCCCeEEEEecCCCCCCCCeE
Q 000736 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK--------AFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1323)
Q Consensus 181 WspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~--------~~~v~slawsPdG~lIAs~s~d~~~~~~~~V 252 (1323)
+.|.|.+|| +++. +|+|+|||.++|.+..++.+. .....-++|+|+|..+|....| +.|
T Consensus 146 ~~p~~~fLA-vss~------dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d------~~V 212 (933)
T KOG1274|consen 146 YDPKGNFLA-VSSC------DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVD------NTV 212 (933)
T ss_pred EcCCCCEEE-EEec------CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccC------CeE
Confidence 999999999 6643 589999999999887776542 2345789999997666666653 579
Q ss_pred EEEeCCCeeEEEEEeccC-CCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCC
Q 000736 253 VFYERNGLERSSFDINEQ-IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTK 331 (1323)
Q Consensus 253 ~~~e~nGl~~~~f~l~~~-~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~ 331 (1323)
++|.++|+.+. |.|+.. ....+..++|||.|++||++.-++ .|-+|++.+ |-. ++. .....+.+|.|+.
T Consensus 213 kvy~r~~we~~-f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g---~I~vWnv~t-~~~--~~~---~~~Vc~~aw~p~~ 282 (933)
T KOG1274|consen 213 KVYSRKGWELQ-FKLRDKLSSSKFSDLQWSPNGKYIAASTLDG---QILVWNVDT-HER--HEF---KRAVCCEAWKPNA 282 (933)
T ss_pred EEEccCCceeh-eeecccccccceEEEEEcCCCcEEeeeccCC---cEEEEeccc-chh--ccc---cceeEEEecCCCC
Confidence 99999998764 677733 234589999999999999999998 899999986 311 111 0123789999988
Q ss_pred Cc
Q 000736 332 PL 333 (1323)
Q Consensus 332 ~~ 333 (1323)
+.
T Consensus 283 n~ 284 (933)
T KOG1274|consen 283 NA 284 (933)
T ss_pred Ce
Confidence 74
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.2e-17 Score=200.65 Aligned_cols=238 Identities=12% Similarity=0.054 Sum_probs=154.6
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEeCCCCe-EEEeceecCcEEEEEEcCC-CCeEEEEeCCccEEEEeec-Cc-eeeee
Q 000736 78 ITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-TEVVGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMTHD-WD-LLYEN 153 (1323)
Q Consensus 78 V~~v~~spdg~~La~as~dG~I~lw~~~~~~-~e~vg~~~~~I~~~awSPD-G~~LA~~s~d~tV~l~t~~-~d-~~~e~ 153 (1323)
.+++-|...| |+.+|.|.+|+..... +..+..|.+.|.+++|||+ +.+||+++.|++|++|+.. .. .....
T Consensus 40 ~~A~~w~~~g-----GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i 114 (568)
T PTZ00420 40 FVAVPWEVEG-----GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEI 114 (568)
T ss_pred eEEEEEEcCC-----CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccc
Confidence 3444454433 5677889999976533 3344456899999999997 8999999999999998632 11 01000
Q ss_pred eecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccC
Q 000736 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS 233 (1323)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPd 233 (1323)
. .++ ..+.+|...|.+++|+|+|.+++.+++ .|++|+|||..+|+...... +...+.+++|+|+
T Consensus 115 --~-----~p~--~~L~gH~~~V~sVaf~P~g~~iLaSgS------~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswspd 178 (568)
T PTZ00420 115 --K-----DPQ--CILKGHKKKISIIDWNPMNYYIMCSSG------FDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIK 178 (568)
T ss_pred --c-----cce--EEeecCCCcEEEEEECCCCCeEEEEEe------CCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCC
Confidence 0 000 123467788999999999987541443 36899999998888776665 4567899999999
Q ss_pred CCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCC----CcEEEEEEccCCCeeEEEEccCC-CCeEEEEEeeCC
Q 000736 234 GANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQID----STVELLKWNCMSDLLAAVVRFEE-YDSVKICFFSNN 307 (1323)
Q Consensus 234 G~lIAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~----~~V~~laWSpDg~~LA~~~~d~~-~~~V~LW~~~n~ 307 (1323)
|++||+++.| ..|++||. .|....+ +..|.. ..++...|++|+..|++++.++. ..+|+|||+.+.
T Consensus 179 G~lLat~s~D------~~IrIwD~Rsg~~i~t--l~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 179 GNLLSGTCVG------KHMHIIDPRKQEIASS--FHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT 250 (568)
T ss_pred CCEEEEEecC------CEEEEEECCCCcEEEE--EecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC
Confidence 9999999875 46999995 4433333 333321 12334457799999999887642 127999998863
Q ss_pred eeEEEeEEEEecCCc-EEEEEccCCCcEEEEEecCCcEE
Q 000736 308 HWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQIT 345 (1323)
Q Consensus 308 ~wylkq~l~~~~~~~-~~v~Wsp~~~~~L~~~~~~g~~~ 345 (1323)
.--+ +.+..+.... ..-.|+++.+..+.++.+|+.+.
T Consensus 251 ~~pl-~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr 288 (568)
T PTZ00420 251 TSAL-VTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCR 288 (568)
T ss_pred CCce-EEEEecCCccceEEeeeCCCCCEEEEEECCCeEE
Confidence 2111 1222211112 34466666655555555565554
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.2e-19 Score=192.93 Aligned_cols=270 Identities=15% Similarity=0.117 Sum_probs=181.9
Q ss_pred cCcEEEEEEcCCCCeEEEEeCCccEEEEee-cCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeecc
Q 000736 116 EGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEF 194 (1323)
Q Consensus 116 ~~~I~~~awSPDG~~LA~~s~d~tV~l~t~-~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~ 194 (1323)
.+.+.|+.|||||++|++++-||-|-+|+- .+.......... ..+|.-+++.+.+|+||.|...+| +++
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQA--------qd~fMMmd~aVlci~FSRDsEMlA-sGs- 282 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQA--------QDNFMMMDDAVLCISFSRDSEMLA-SGS- 282 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhh--------hcceeecccceEEEeecccHHHhh-ccC-
Confidence 567999999999999999999999999862 222211111111 124456788999999999999999 665
Q ss_pred ccccCCCCEEEEEECCCCceeeeec-cCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEeccCCC
Q 000736 195 CNSSKLHKRLKVWERDSGTLQASSE-LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQID 272 (1323)
Q Consensus 195 d~~~~~d~~IrVWd~~~G~l~~t~e-~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~ 272 (1323)
.|++||||..++|.++..++ .|...|.+++||.|+..|.|++.| ++|++.- +.|....+| ++ +.
T Consensus 283 -----qDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD------~tvRiHGlKSGK~LKEf--rG-Hs 348 (508)
T KOG0275|consen 283 -----QDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFD------QTVRIHGLKSGKCLKEF--RG-HS 348 (508)
T ss_pred -----cCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhccccc------ceEEEeccccchhHHHh--cC-cc
Confidence 46899999999999999987 788889999999999999999996 5688764 233333333 22 35
Q ss_pred CcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCC-c-EEEEEccCCCcEEEEEecCCcEEEEEEE
Q 000736 273 STVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRD-G-IRFMWHPTKPLQLICWTLDGQITTYNFI 350 (1323)
Q Consensus 273 ~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~-~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~ 350 (1323)
..|+...|++||..+.+++.|+ +|++|+.++..+. +++...+.+ . .++.--|.+|-.+.+.+.++++.+.+..
T Consensus 349 Syvn~a~ft~dG~~iisaSsDg---tvkvW~~KtteC~--~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q 423 (508)
T KOG0275|consen 349 SYVNEATFTDDGHHIISASSDG---TVKVWHGKTTECL--STFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ 423 (508)
T ss_pred ccccceEEcCCCCeEEEecCCc---cEEEecCcchhhh--hhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc
Confidence 6799999999999999999999 9999998865542 223222222 2 5566667776655555554444332211
Q ss_pred ------Eeee-------------eCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeec-CCCCEEEEEEecCCCCCEEEE
Q 000736 351 ------WTTA-------------VMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLK-FPTAVTEMAFYSKSSKNCLAA 410 (1323)
Q Consensus 351 ------~~~~-------------~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~-~~~~V~~VaFSpdg~~~~LAs 410 (1323)
|+.. |.+.-+.++..+..+.-.....+.. .+++. |..-|..++-+|.. +.||+
T Consensus 424 GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~L-----E~tl~VhEkdvIGl~HHPHq--NllAs 496 (508)
T KOG0275|consen 424 GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKL-----ERTLPVHEKDVIGLTHHPHQ--NLLAS 496 (508)
T ss_pred ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCce-----eeeeecccccccccccCccc--chhhh
Confidence 1100 1111112222222222111111111 12332 56667889999998 99999
Q ss_pred EECCCcEEEEE
Q 000736 411 ILSDGCLCVVD 421 (1323)
Q Consensus 411 ~s~Dgti~lw~ 421 (1323)
.+.||.++||.
T Consensus 497 YsEDgllKLWk 507 (508)
T KOG0275|consen 497 YSEDGLLKLWK 507 (508)
T ss_pred hcccchhhhcC
Confidence 99999999996
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-18 Score=198.97 Aligned_cols=281 Identities=15% Similarity=0.127 Sum_probs=207.1
Q ss_pred CCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCC-C-eEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceee
Q 000736 75 GDSITAFDYLM-EKEALIVGTSSGLLLLHSVDG-N-ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY 151 (1323)
Q Consensus 75 ~~~V~~v~~sp-dg~~La~as~dG~I~lw~~~~-~-~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~ 151 (1323)
...|.++.|+| .+..|++++-||.|+|||+-+ + .+...-+|..+|.+++||++|..+.++|-|++|++|+ +-+
T Consensus 214 ~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwD----tET 289 (503)
T KOG0282|consen 214 TKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWD----TET 289 (503)
T ss_pred ccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeec----ccc
Confidence 35899999999 899999999999999999865 3 3456666799999999999999999999999998764 334
Q ss_pred eeeecccCCCceeccCccccCCCCeEEEEEecCC-cEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEE
Q 000736 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDG-KYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEW 230 (1323)
Q Consensus 152 e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG-~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slaw 230 (1323)
+..+.... .+....++.|.||+ ..|. +|+ .++.|+-||.++|+.......|-+.+..|.|
T Consensus 290 G~~~~~f~------------~~~~~~cvkf~pd~~n~fl-~G~------sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F 350 (503)
T KOG0282|consen 290 GQVLSRFH------------LDKVPTCVKFHPDNQNIFL-VGG------SDKKIRQWDIRSGKVVQEYDRHLGAILDITF 350 (503)
T ss_pred ceEEEEEe------------cCCCceeeecCCCCCcEEE-Eec------CCCcEEEEeccchHHHHHHHhhhhheeeeEE
Confidence 43332211 11244899999999 5666 564 4689999999899998888888899999999
Q ss_pred ccCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeC-Ce
Q 000736 231 MPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN-NH 308 (1323)
Q Consensus 231 sPdG~lIAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n-~~ 308 (1323)
-|+|+..+++++++ .|++||-. +-.+. +.. .+......+|.-+|++..+|..+-|. .|-++.+.+ +.
T Consensus 351 ~~~g~rFissSDdk------s~riWe~~~~v~ik-~i~-~~~~hsmP~~~~~P~~~~~~aQs~dN---~i~ifs~~~~~r 419 (503)
T KOG0282|consen 351 VDEGRRFISSSDDK------SVRIWENRIPVPIK-NIA-DPEMHTMPCLTLHPNGKWFAAQSMDN---YIAIFSTVPPFR 419 (503)
T ss_pred ccCCceEeeeccCc------cEEEEEcCCCccch-hhc-chhhccCcceecCCCCCeehhhccCc---eEEEEecccccc
Confidence 99999999999975 59999832 11111 111 11223466899999999999999887 788888653 11
Q ss_pred eEEEeEEEEecCCc--EEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceee
Q 000736 309 WYLKYEIRYLRRDG--IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLF 386 (1323)
Q Consensus 309 wylkq~l~~~~~~~--~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~ 386 (1323)
-..|..+..|.-.+ ..+.||||+.. |+.++.+|.+..++ |.+. ++ + .
T Consensus 420 ~nkkK~feGh~vaGys~~v~fSpDG~~-l~SGdsdG~v~~wd--wkt~---------------kl-----------~--~ 468 (503)
T KOG0282|consen 420 LNKKKRFEGHSVAGYSCQVDFSPDGRT-LCSGDSDGKVNFWD--WKTT---------------KL-----------V--S 468 (503)
T ss_pred cCHhhhhcceeccCceeeEEEcCCCCe-EEeecCCccEEEee--chhh---------------hh-----------h--h
Confidence 12233333433333 78999999975 78888777764332 2211 00 0 1
Q ss_pred ee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEE
Q 000736 387 SL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1323)
Q Consensus 387 ~l-~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~ 421 (1323)
.+ .|+.++..|.|+|.-. +.+|+++.||.|++|+
T Consensus 469 ~lkah~~~ci~v~wHP~e~-Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 469 KLKAHDQPCIGVDWHPVEP-SKVATCGWDGLIKIWD 503 (503)
T ss_pred ccccCCcceEEEEecCCCc-ceeEecccCceeEecC
Confidence 22 3677889999999864 7899999999999995
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-18 Score=183.37 Aligned_cols=278 Identities=16% Similarity=0.167 Sum_probs=204.9
Q ss_pred CCEEEEEEec---CCCEEEEEeCCCcEEEEeCCCCeE-EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceee
Q 000736 76 DSITAFDYLM---EKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY 151 (1323)
Q Consensus 76 ~~V~~v~~sp---dg~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~ 151 (1323)
..|++++||| +|-+|++++.||.=.|-+-+|+.+ -.+..|.+.|++...+.+-..-|+++.|=+-++ |+.++
T Consensus 15 rpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakv----w~a~t 90 (334)
T KOG0278|consen 15 RPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKV----WDAVT 90 (334)
T ss_pred cceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhh----hhhhh
Confidence 4799999986 889999999999999888888764 355567999999999999999999999988876 45666
Q ss_pred eeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCc-eeeeeccCCCceeEEEE
Q 000736 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT-LQASSELKAFMGAVLEW 230 (1323)
Q Consensus 152 e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~-l~~t~e~~~~~v~slaw 230 (1323)
+-.++... |..-|..++|+.|.++|. .++ .+..+||||.+.-+ ......+|++.|..+-|
T Consensus 91 gdelhsf~------------hkhivk~~af~~ds~~ll-tgg------~ekllrvfdln~p~App~E~~ghtg~Ir~v~w 151 (334)
T KOG0278|consen 91 GDELHSFE------------HKHIVKAVAFSQDSNYLL-TGG------QEKLLRVFDLNRPKAPPKEISGHTGGIRTVLW 151 (334)
T ss_pred hhhhhhhh------------hhheeeeEEecccchhhh-ccc------hHHHhhhhhccCCCCCchhhcCCCCcceeEEE
Confidence 66666543 344578999999999999 554 35789999974332 22235578899999999
Q ss_pred ccCCCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCee
Q 000736 231 MPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1323)
Q Consensus 231 sPdG~lIAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~w 309 (1323)
...-+.|.|+++| .+|++|| +.|.+...+.+ ...|.++..|+||.+|.++... +|++|+.++..-
T Consensus 152 c~eD~~iLSSadd------~tVRLWD~rTgt~v~sL~~----~s~VtSlEvs~dG~ilTia~gs----sV~Fwdaksf~~ 217 (334)
T KOG0278|consen 152 CHEDKCILSSADD------KTVRLWDHRTGTEVQSLEF----NSPVTSLEVSQDGRILTIAYGS----SVKFWDAKSFGL 217 (334)
T ss_pred eccCceEEeeccC------CceEEEEeccCcEEEEEec----CCCCcceeeccCCCEEEEecCc----eeEEeccccccc
Confidence 9999999998776 4699999 56766554333 2458999999999999888655 599999988652
Q ss_pred EEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeec
Q 000736 310 YLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLK 389 (1323)
Q Consensus 310 ylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~ 389 (1323)
|| +...+ ....+..-+|+.. .++++..++.+..+++ .+ |..+- .+.-+
T Consensus 218 -lK-s~k~P-~nV~SASL~P~k~-~fVaGged~~~~kfDy--~T------------geEi~--------------~~nkg 265 (334)
T KOG0278|consen 218 -LK-SYKMP-CNVESASLHPKKE-FFVAGGEDFKVYKFDY--NT------------GEEIG--------------SYNKG 265 (334)
T ss_pred -ee-eccCc-cccccccccCCCc-eEEecCcceEEEEEec--cC------------Cceee--------------ecccC
Confidence 22 22221 2335667889884 3555554443332222 11 11111 01235
Q ss_pred CCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCC
Q 000736 390 FPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1323)
Q Consensus 390 ~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~ 424 (1323)
|.++|.+|.||||| ...|+++.||+|+||+...
T Consensus 266 h~gpVhcVrFSPdG--E~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 266 HFGPVHCVRFSPDG--ELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred CCCceEEEEECCCC--ceeeccCCCceEEEEEecC
Confidence 78999999999999 8999999999999999864
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.3e-16 Score=181.52 Aligned_cols=241 Identities=16% Similarity=0.088 Sum_probs=167.7
Q ss_pred ccccccc-ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEE
Q 000736 15 ELQSKDE-ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVG 93 (1323)
Q Consensus 15 ~~~~~~~-~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~a 93 (1323)
.+..+.+ .+..+||- ++++||+++-++.|.+||+ .+.+- .. .++ ..++.|++++.+|.+..+++|
T Consensus 63 vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl--~~lk~--~~--------~~d-~~gg~IWsiai~p~~~~l~Ig 128 (691)
T KOG2048|consen 63 VIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDL--HTLKQ--KY--------NID-SNGGAIWSIAINPENTILAIG 128 (691)
T ss_pred EEecCCCCceeeEEEc-cCCeEEeecCCceEEEEec--ccCce--eE--------Eec-CCCcceeEEEeCCccceEEee
Confidence 4444433 78899997 8999999999999999999 66553 11 111 116899999999999999999
Q ss_pred eCCCcEEEEeCCCCeEE---EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe-ecCceeeeeeecccCCCceeccCcc
Q 000736 94 TSSGLLLLHSVDGNATE---VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPEL 169 (1323)
Q Consensus 94 s~dG~I~lw~~~~~~~e---~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t-~~~d~~~e~~l~~~~~~~~Vs~tqf 169 (1323)
.+||.+...+...+.++ .++...+.|.+++|+|+|..||.|+.||.|++|+ +..+.+.-.....+.-++
T Consensus 129 cddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k------- 201 (691)
T KOG2048|consen 129 CDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSK------- 201 (691)
T ss_pred cCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeeccccccc-------
Confidence 99997777777777765 5677678999999999999999999999998875 222222211111111000
Q ss_pred ccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCC
Q 000736 170 SSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKC 249 (1323)
Q Consensus 170 ~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~ 249 (1323)
....-++++.+=.||. +| ++ +..|+|++||...|.+.....-|++.|.+++-.++++.+.+++.|+
T Consensus 202 -~~~~iVWSv~~Lrd~t-I~-sg------DS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~----- 267 (691)
T KOG2048|consen 202 -REPTIVWSVLFLRDST-IA-SG------DSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDP----- 267 (691)
T ss_pred -CCceEEEEEEEeecCc-EE-Ee------cCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCC-----
Confidence 0112356777778886 44 33 3358999999999999998888999999999999999999999874
Q ss_pred CeEEEEeCCCeeEEEEEec---cCCCCcEEEEEEccCCCeeEEEEccC
Q 000736 250 PSIVFYERNGLERSSFDIN---EQIDSTVELLKWNCMSDLLAAVVRFE 294 (1323)
Q Consensus 250 ~~V~~~e~nGl~~~~f~l~---~~~~~~V~~laWSpDg~~LA~~~~d~ 294 (1323)
..+.+... |... ++... ..+...|.+++-.++ .|.+|+.|.
T Consensus 268 ~ii~~~~~-~~~~-~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~ 311 (691)
T KOG2048|consen 268 KIIQYSLT-TNKS-EWVINSRRDLHAHDVRSMAVIEN--ALISGGRDF 311 (691)
T ss_pred ceEEEEec-CCcc-ceeeeccccCCcccceeeeeecc--eEEecceee
Confidence 34444432 2211 12211 122345777776666 555555554
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.8e-17 Score=174.01 Aligned_cols=266 Identities=15% Similarity=0.134 Sum_probs=185.4
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeE--E--EeceecCcEEEEEEcCC-CCeEEEEeCCccEEEEe-ecCc
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT--E--VVGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMT-HDWD 148 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~--e--~vg~~~~~I~~~awSPD-G~~LA~~s~d~tV~l~t-~~~d 148 (1323)
...|.+|+|..+|..|++++.|+++.+|+++..+. + ..| |.+.|-.++|+|- ..++|++++|.+|++|+ +..+
T Consensus 20 ~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~g-h~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k 98 (313)
T KOG1407|consen 20 VQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRG-HTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGK 98 (313)
T ss_pred hhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccC-CCcchhhheeCCCCCcceEEecCCceEEEEEeccCc
Confidence 35899999999999999999999999999987432 2 333 4677889999875 46899999999999986 5556
Q ss_pred eeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEE
Q 000736 149 LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVL 228 (1323)
Q Consensus 149 ~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~sl 228 (1323)
++..+..... -.-|+|+|||+|+| ++.- +..|.+.|..+-+... .+....-+..+
T Consensus 99 ~~~~i~~~~e-----------------ni~i~wsp~g~~~~-~~~k------dD~it~id~r~~~~~~-~~~~~~e~ne~ 153 (313)
T KOG1407|consen 99 CTARIETKGE-----------------NINITWSPDGEYIA-VGNK------DDRITFIDARTYKIVN-EEQFKFEVNEI 153 (313)
T ss_pred EEEEeeccCc-----------------ceEEEEcCCCCEEE-EecC------cccEEEEEecccceee-hhcccceeeee
Confidence 6555543322 26799999999999 7643 3456666663444333 33355567899
Q ss_pred EEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCe
Q 000736 229 EWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1323)
Q Consensus 229 awsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~ 308 (1323)
+|+-++.+..-.... ++|.+..---+++- ..+..| ......|.|+|||+++|+|+.|. .|-|||++..-
T Consensus 154 ~w~~~nd~Fflt~Gl------G~v~ILsypsLkpv-~si~AH-~snCicI~f~p~GryfA~GsADA---lvSLWD~~ELi 222 (313)
T KOG1407|consen 154 SWNNSNDLFFLTNGL------GCVEILSYPSLKPV-QSIKAH-PSNCICIEFDPDGRYFATGSADA---LVSLWDVDELI 222 (313)
T ss_pred eecCCCCEEEEecCC------ceEEEEeccccccc-cccccC-CcceEEEEECCCCceEeeccccc---eeeccChhHhh
Confidence 999888876544332 35655542222221 133333 46788999999999999999999 89999998643
Q ss_pred eEEEeEEEEec-CCc-EEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceee
Q 000736 309 WYLKYEIRYLR-RDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLF 386 (1323)
Q Consensus 309 wylkq~l~~~~-~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~ 386 (1323)
. +-.++. +-+ ..+.|+-++.+ |+.++.|..+ + ++-|-+|.++ +
T Consensus 223 C----~R~isRldwpVRTlSFS~dg~~-lASaSEDh~I---D-----------IA~vetGd~~----------------~ 267 (313)
T KOG1407|consen 223 C----ERCISRLDWPVRTLSFSHDGRM-LASASEDHFI---D-----------IAEVETGDRV----------------W 267 (313)
T ss_pred h----heeeccccCceEEEEeccCcce-eeccCccceE---E-----------eEecccCCeE----------------E
Confidence 2 223332 234 77899988875 6776655322 1 2334456653 3
Q ss_pred eecCCCCEEEEEEecCCCCCEEEEEECC
Q 000736 387 SLKFPTAVTEMAFYSKSSKNCLAAILSD 414 (1323)
Q Consensus 387 ~l~~~~~V~~VaFSpdg~~~~LAs~s~D 414 (1323)
++++.++-..|||+|.. .+||-+..|
T Consensus 268 eI~~~~~t~tVAWHPk~--~LLAyA~dd 293 (313)
T KOG1407|consen 268 EIPCEGPTFTVAWHPKR--PLLAYACDD 293 (313)
T ss_pred EeeccCCceeEEecCCC--ceeeEEecC
Confidence 56678888999999998 788877665
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-15 Score=179.37 Aligned_cols=113 Identities=17% Similarity=0.263 Sum_probs=86.9
Q ss_pred EEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEe
Q 000736 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE 256 (1323)
Q Consensus 177 ~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e 256 (1323)
.-++|.|---+|| |++..++ ..+.|.||-- +|+.+.--+ .+-.+.+++|+|.--.||++=. -..+.+|.
T Consensus 19 ti~SWHPsePlfA-VA~fS~e--r~GSVtIfad-tGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe------~g~~~v~~ 87 (1416)
T KOG3617|consen 19 TISSWHPSEPLFA-VASFSPE--RGGSVTIFAD-TGEPQRDVT-YPVHATSLCWHPEEFVLAQGWE------MGVSDVQK 87 (1416)
T ss_pred cccccCCCCceeE-EEEecCC--CCceEEEEec-CCCCCcccc-cceehhhhccChHHHHHhhccc------cceeEEEe
Confidence 4478999999999 8888774 4578999977 888655321 1223578999999989998755 35688898
Q ss_pred CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee
Q 000736 257 RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1323)
Q Consensus 257 ~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~ 305 (1323)
.|..... +.+.++...|..+.|||||..|.++..-+ .|.+|...
T Consensus 88 ~~~~e~h--tv~~th~a~i~~l~wS~~G~~l~t~d~~g---~v~lwr~d 131 (1416)
T KOG3617|consen 88 TNTTETH--TVVETHPAPIQGLDWSHDGTVLMTLDNPG---SVHLWRYD 131 (1416)
T ss_pred cCCceee--eeccCCCCCceeEEecCCCCeEEEcCCCc---eeEEEEee
Confidence 8754333 45556677899999999999999998887 89999875
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.9e-16 Score=174.95 Aligned_cols=394 Identities=15% Similarity=0.158 Sum_probs=247.9
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1323)
.+....|-|-...|.+....+.|+.|++ ..+.. .+... +.+-.. ...|.++.|.++|+. ++|-++|+|.|
T Consensus 202 ~v~~a~FHPtd~nliit~Gk~H~~Fw~~--~~~~l-~k~~~----~fek~e--kk~Vl~v~F~engdv-iTgDS~G~i~I 271 (626)
T KOG2106|consen 202 VVFLATFHPTDPNLIITCGKGHLYFWTL--RGGSL-VKRQG----IFEKRE--KKFVLCVTFLENGDV-ITGDSGGNILI 271 (626)
T ss_pred eEEEEEeccCCCcEEEEeCCceEEEEEc--cCCce-EEEee----cccccc--ceEEEEEEEcCCCCE-EeecCCceEEE
Confidence 4555667665555555555555999998 33332 22111 111111 257999999999976 57899999999
Q ss_pred EeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccC-------CCc---eec-----
Q 000736 102 HSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELA-------EGF---DVH----- 165 (1323)
Q Consensus 102 w~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~-------~~~---~Vs----- 165 (1323)
|+..+.++. .+-.|++||.+++---||.+|- |+.|..|..|+.+...+.++.+...- +++ .|.
T Consensus 272 w~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~ 350 (626)
T KOG2106|consen 272 WSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNF 350 (626)
T ss_pred EeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccce
Confidence 999887653 3337899999999999998776 99999999999877777776655432 111 111
Q ss_pred ------cCccc----cCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCC
Q 000736 166 ------EPELS----SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA 235 (1323)
Q Consensus 166 ------~tqf~----~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~ 235 (1323)
+..|. +|.+..+.++-.|+...|+|++ .|+.+++|+ .-++..+-. ......+++|.|.|
T Consensus 351 iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~g-------qdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg- 419 (626)
T KOG2106|consen 351 ILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCG-------QDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG- 419 (626)
T ss_pred EEEeeecCCceEEEEecccceeeEEcCCChhheeecc-------CcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-
Confidence 22222 7888999999999999999543 469999999 445555432 45567899999999
Q ss_pred eEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCC-eeEEEeE
Q 000736 236 NIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN-HWYLKYE 314 (1323)
Q Consensus 236 lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~-~wylkq~ 314 (1323)
.||.|..- ...-+.+... +...+++.. ...+..++|||||..||+++.|. .|.|+.++.. .-|-+.
T Consensus 420 ~va~Gt~~------G~w~V~d~e~--~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~---~iyiy~Vs~~g~~y~r~- 486 (626)
T KOG2106|consen 420 VVAVGTAT------GRWFVLDTET--QDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDN---HIYIYRVSANGRKYSRV- 486 (626)
T ss_pred eEEEeecc------ceEEEEeccc--ceeEEEEec-CCceEEEEEcCCCCEEEEecCCC---eEEEEEECCCCcEEEEe-
Confidence 88887653 2233344321 222344433 56799999999999999999998 8999999743 323221
Q ss_pred EEEecCCc-EEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeee--cCC
Q 000736 315 IRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL--KFP 391 (1323)
Q Consensus 315 l~~~~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l--~~~ 391 (1323)
-..+ ... +.+.|++|+.. |..- +|.+.. ..|........ ..+ +.++...-+ .. .-+... .+.
T Consensus 487 ~k~~-gs~ithLDwS~Ds~~-~~~~--S~d~ei--LyW~~~~~~~~-ts~---kDvkW~t~~-c~----lGF~v~g~s~~ 551 (626)
T KOG2106|consen 487 GKCS-GSPITHLDWSSDSQF-LVSN--SGDYEI--LYWKPSECKQI-TSV---KDVKWATYT-CT----LGFEVFGGSDG 551 (626)
T ss_pred eeec-CceeEEeeecCCCce-EEec--cCceEE--EEEccccCccc-cee---cceeeeeeE-EE----EEEEEecccCC
Confidence 1122 244 88999999875 4333 343332 24522211100 011 112111100 00 000011 234
Q ss_pred CCEEEEEEecCCCCCEEEEEECCCcEEEEECCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCC
Q 000736 392 TAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRH 471 (1323)
Q Consensus 392 ~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~ 471 (1323)
..|+.++-|.+. +++|++...|+|+||..+-.... ..-+++ ..+..-|.+++|+.++..+.+...+ .
T Consensus 552 t~i~a~~rs~~~--~~lA~gdd~g~v~lf~yPc~s~r--A~~he~-------~ghs~~vt~V~Fl~~d~~li~tg~D--~ 618 (626)
T KOG2106|consen 552 TDINAVARSHCE--KLLASGDDFGKVHLFSYPCSSPR--APSHEY-------GGHSSHVTNVAFLCKDSHLISTGKD--T 618 (626)
T ss_pred chHHHhhhhhhh--hhhhccccCceEEEEccccCCCc--ccceee-------ccccceeEEEEEeeCCceEEecCCC--c
Confidence 557788888888 89999999999999998632111 111111 2345579999999988776654432 5
Q ss_pred eeEEEEe
Q 000736 472 SNYFRGA 478 (1323)
Q Consensus 472 ~~~~~~~ 478 (1323)
++..|.+
T Consensus 619 Si~qW~l 625 (626)
T KOG2106|consen 619 SIMQWRL 625 (626)
T ss_pred eEEEEEe
Confidence 5655543
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.7e-17 Score=193.01 Aligned_cols=278 Identities=14% Similarity=0.119 Sum_probs=194.5
Q ss_pred cEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccc
Q 000736 118 GVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNS 197 (1323)
Q Consensus 118 ~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~ 197 (1323)
..+-+.|| -.+.||+|.+. .|.+|+..-..+.... .. +.+.++++.|++||.+|| ++.
T Consensus 179 Y~nlldWs-s~n~laValg~-~vylW~~~s~~v~~l~--~~-------------~~~~vtSv~ws~~G~~La-vG~---- 236 (484)
T KOG0305|consen 179 YLNLLDWS-SANVLAVALGQ-SVYLWSASSGSVTELC--SF-------------GEELVTSVKWSPDGSHLA-VGT---- 236 (484)
T ss_pred hhhHhhcc-cCCeEEEEecc-eEEEEecCCCceEEeE--ec-------------CCCceEEEEECCCCCEEE-Eee----
Confidence 35568999 44788888775 6889874322222211 11 135789999999999999 885
Q ss_pred cCCCCEEEEEECCCCceeeeecc-CCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcE
Q 000736 198 SKLHKRLKVWERDSGTLQASSEL-KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTV 275 (1323)
Q Consensus 198 ~~~d~~IrVWd~~~G~l~~t~e~-~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V 275 (1323)
.++.|.|||+.+.+...+... |.+.|.+++|+ +..+.+|+++ ..|.+++.. +..+.. ++.+ +...|
T Consensus 237 --~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~------~~I~~~dvR~~~~~~~-~~~~-H~qeV 304 (484)
T KOG0305|consen 237 --SDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRD------GKILNHDVRISQHVVS-TLQG-HRQEV 304 (484)
T ss_pred --cCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCC------CcEEEEEEecchhhhh-hhhc-cccee
Confidence 458999999988777777777 99999999999 6778888885 468888843 222221 2322 35679
Q ss_pred EEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeee
Q 000736 276 ELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAV 355 (1323)
Q Consensus 276 ~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~ 355 (1323)
..++||+|+.+||+++.|. .+.|||....++ ++.+.-|....-.++|+|=.+..|+++. |.-
T Consensus 305 CgLkws~d~~~lASGgnDN---~~~Iwd~~~~~p--~~~~~~H~aAVKA~awcP~q~~lLAsGG--Gs~----------- 366 (484)
T KOG0305|consen 305 CGLKWSPDGNQLASGGNDN---VVFIWDGLSPEP--KFTFTEHTAAVKALAWCPWQSGLLATGG--GSA----------- 366 (484)
T ss_pred eeeEECCCCCeeccCCCcc---ceEeccCCCccc--cEEEeccceeeeEeeeCCCccCceEEcC--CCc-----------
Confidence 9999999999999999998 999999854333 2233333233477899997776566654 321
Q ss_pred CCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEE--EECCCcEEEEECCCCCccccccC
Q 000736 356 MENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAA--ILSDGCLCVVDLPAPDMLEDLEG 433 (1323)
Q Consensus 356 ~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs--~s~Dgti~lw~~~~~~~~~~~~g 433 (1323)
+.+|++|+.... .+...+.-.+.|.+|.||+.. +-|++ |..++.|.||+.++......+.|
T Consensus 367 ----------D~~i~fwn~~~g-----~~i~~vdtgsQVcsL~Wsk~~--kEi~sthG~s~n~i~lw~~ps~~~~~~l~g 429 (484)
T KOG0305|consen 367 ----------DRCIKFWNTNTG-----ARIDSVDTGSQVCSLIWSKKY--KELLSTHGYSENQITLWKYPSMKLVAELLG 429 (484)
T ss_pred ----------ccEEEEEEcCCC-----cEecccccCCceeeEEEcCCC--CEEEEecCCCCCcEEEEeccccceeeeecC
Confidence 123444433211 111233446789999999998 44444 56788999999987555444444
Q ss_pred CceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCeeEEEEe
Q 000736 434 TEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1323)
Q Consensus 434 ~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1323)
|...|.+++|+|||..+++++.+ .++.+|++
T Consensus 430 ------------H~~RVl~la~SPdg~~i~t~a~D--ETlrfw~~ 460 (484)
T KOG0305|consen 430 ------------HTSRVLYLALSPDGETIVTGAAD--ETLRFWNL 460 (484)
T ss_pred ------------CcceeEEEEECCCCCEEEEeccc--CcEEeccc
Confidence 45689999999999999998876 68888876
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.8e-15 Score=167.30 Aligned_cols=411 Identities=13% Similarity=0.080 Sum_probs=271.7
Q ss_pred eecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCc--------E
Q 000736 28 LDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGL--------L 99 (1323)
Q Consensus 28 ~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~--------I 99 (1323)
+=+-++.||++..=..++-|+. ..+.. ..+| ++.|.+++.+||-..+++|-..|+ |
T Consensus 73 ~lptgE~vyfvA~V~Vl~n~ee--~~Qr~----------y~GH----~ddikc~~vHPdri~vatGQ~ag~~g~~~~phv 136 (626)
T KOG2106|consen 73 LLPTGELVYFVAAVGVLYNWEE--RSQRH----------YLGH----NDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHV 136 (626)
T ss_pred EccCccEEEEeccEEEEEeehh--hhccc----------ccCC----CCceEEEeecCCceeeccCcccccCCCcCCCee
Confidence 3466788888877665666644 22221 2223 578999999999988887766664 8
Q ss_pred EEEeCCC-CeEEEeceecCcEEEEEEcCC--CCeEEEEe--CCccEEEEeecCceeeeeeecccCCCceeccCccccCCC
Q 000736 100 LLHSVDG-NATEVVGRVEGGVRFISPSPD--GDLLGVTT--GFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1323)
Q Consensus 100 ~lw~~~~-~~~e~vg~~~~~I~~~awSPD--G~~LA~~s--~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~ 174 (1323)
++||..+ ..+.++|..+.||.|++||+- |.+|+... .+.-+.+|+..|. ..+.+-. ....
T Consensus 137 riWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~----~~~~~vk-----------~sne 201 (626)
T KOG2106|consen 137 RIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKK----AKLGPVK-----------TSNE 201 (626)
T ss_pred eecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhh----hccCcce-----------eccc
Confidence 9999765 456688888999999999984 55555553 2334555543222 2111110 1123
Q ss_pred CeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeee---eccCC-CceeEEEEccCCCeEEEEecCCCCCCCC
Q 000736 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS---SELKA-FMGAVLEWMPSGANIAAVYDRKSENKCP 250 (1323)
Q Consensus 175 ~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t---~e~~~-~~v~slawsPdG~lIAs~s~d~~~~~~~ 250 (1323)
.+.-..|.|-+.-+. +. -+.+.+..|+++.|.+... ++.++ ..|.+++|.|+|..|..=| ..
T Consensus 202 ~v~~a~FHPtd~nli-it------~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS-------~G 267 (626)
T KOG2106|consen 202 VVFLATFHPTDPNLI-IT------CGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDS-------GG 267 (626)
T ss_pred eEEEEEeccCCCcEE-EE------eCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecC-------Cc
Confidence 567889999887666 43 2358999999977776553 44332 5689999999999775322 35
Q ss_pred eEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCc--EEEEEc
Q 000736 251 SIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG--IRFMWH 328 (1323)
Q Consensus 251 ~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~--~~v~Ws 328 (1323)
.|.+|.+.|.+...-.. .+++.|.+|.---||++|- |+.|+ .|-+|| .||.-. +++..+...+ ..+.
T Consensus 268 ~i~Iw~~~~~~~~k~~~--aH~ggv~~L~~lr~GtllS-GgKDR---ki~~Wd-~~y~k~--r~~elPe~~G~iRtv~-- 336 (626)
T KOG2106|consen 268 NILIWSKGTNRISKQVH--AHDGGVFSLCMLRDGTLLS-GGKDR---KIILWD-DNYRKL--RETELPEQFGPIRTVA-- 336 (626)
T ss_pred eEEEEeCCCceEEeEee--ecCCceEEEEEecCccEee-cCccc---eEEecc-cccccc--ccccCchhcCCeeEEe--
Confidence 79999997766443222 3467899999999999987 88898 899999 776532 3444443332 2221
Q ss_pred cCCCcEEEEEecCCcEEE--------------EEEEEeee--eCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCC
Q 000736 329 PTKPLQLICWTLDGQITT--------------YNFIWTTA--VMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPT 392 (1323)
Q Consensus 329 p~~~~~L~~~~~~g~~~~--------------~~~~~~~~--~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~~~~ 392 (1323)
+.++- |.+++..+.+.. .+-.|..+ |++...+.....+++.+|+ .... .++.....
T Consensus 337 e~~~d-i~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~~k~------~wt~~~~d 408 (626)
T KOG2106|consen 337 EGKGD-ILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-DHKL------EWTKIIED 408 (626)
T ss_pred cCCCc-EEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-CCce------eEEEEecC
Confidence 22232 566654433332 12235444 5555556666677788887 2221 23445678
Q ss_pred CEEEEEEecCCCCCEEEEEECCCcEEEEECCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCe
Q 000736 393 AVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHS 472 (1323)
Q Consensus 393 ~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~ 472 (1323)
++.+++|.|.| .+|+++..|...+.|.++...... . .....+.-+.|+|+|.+||+++.+ +.
T Consensus 409 ~~~~~~fhpsg---~va~Gt~~G~w~V~d~e~~~lv~~--------~-----~d~~~ls~v~ysp~G~~lAvgs~d--~~ 470 (626)
T KOG2106|consen 409 PAECADFHPSG---VVAVGTATGRWFVLDTETQDLVTI--------H-----TDNEQLSVVRYSPDGAFLAVGSHD--NH 470 (626)
T ss_pred ceeEeeccCcc---eEEEeeccceEEEEecccceeEEE--------E-----ecCCceEEEEEcCCCCEEEEecCC--Ce
Confidence 89999999998 999999999999999876433310 0 113467888999999999999987 67
Q ss_pred eEEEEeecccCccccchhhhhhhhcccccccccccccccceeeeeecccCCcEEEEeeCCCCCceEEEEeeCCeEEEE
Q 000736 473 NYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEY 550 (1323)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~q~~dG~v~~~ 550 (1323)
+.+|.++-+| ..+........ .+|+++-+|+ |++.+.-++.|=.+..|
T Consensus 471 iyiy~Vs~~g----------------------------~~y~r~~k~~g-s~ithLDwS~-Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 471 IYIYRVSANG----------------------------RKYSRVGKCSG-SPITHLDWSS-DSQFLVSNSGDYEILYW 518 (626)
T ss_pred EEEEEECCCC----------------------------cEEEEeeeecC-ceeEEeeecC-CCceEEeccCceEEEEE
Confidence 8888775433 22322222333 7788998988 88888788888788877
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-16 Score=175.62 Aligned_cols=282 Identities=10% Similarity=0.042 Sum_probs=205.8
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeee
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~ 153 (1323)
-+.|.+|++-|-.+.+|+|+.|++|+|||+.++++. .+..|-..|..+++|+-.-+|.+++.|++|+-|+...+ .
T Consensus 151 lgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n----k 226 (460)
T KOG0285|consen 151 LGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN----K 226 (460)
T ss_pred cceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhh----h
Confidence 478999999999999999999999999999999876 44445778999999999999999999999988753321 1
Q ss_pred eecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccC
Q 000736 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS 233 (1323)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPd 233 (1323)
-+. .++||-.+|.+++-.|-=..|+ +++ .|.++||||.++-....++.+|...|.++.+.|-
T Consensus 227 vIR-----------~YhGHlS~V~~L~lhPTldvl~-t~g------rDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~ 288 (460)
T KOG0285|consen 227 VIR-----------HYHGHLSGVYCLDLHPTLDVLV-TGG------RDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPT 288 (460)
T ss_pred hHH-----------HhccccceeEEEeccccceeEE-ecC------CcceEEEeeecccceEEEecCCCCcceeEEeecC
Confidence 121 1336667899999999988888 443 4689999999899999999999999999999997
Q ss_pred CCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEE
Q 000736 234 GANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLK 312 (1323)
Q Consensus 234 G~lIAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylk 312 (1323)
.-.|.+++-|. +|+||| ++|..-. ++. ++...|.+++.+|+-..+|+++.|. |+-|++-.... -
T Consensus 289 dpqvit~S~D~------tvrlWDl~agkt~~--tlt-~hkksvral~lhP~e~~fASas~dn----ik~w~~p~g~f--~ 353 (460)
T KOG0285|consen 289 DPQVITGSHDS------TVRLWDLRAGKTMI--TLT-HHKKSVRALCLHPKENLFASASPDN----IKQWKLPEGEF--L 353 (460)
T ss_pred CCceEEecCCc------eEEEeeeccCceeE--eee-cccceeeEEecCCchhhhhccCCcc----ceeccCCccch--h
Confidence 77888998864 699999 5664432 222 3345799999999999999999997 88898865431 1
Q ss_pred eEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCc-------CCCCCcee
Q 000736 313 YEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLS-------LMPPPMYL 385 (1323)
Q Consensus 313 q~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~-------~vPppm~~ 385 (1323)
+.+..+......+.=..|+ .+..+. |...+..|+++.. .++.|-
T Consensus 354 ~nlsgh~~iintl~~nsD~--v~~~G~-------------------------dng~~~fwdwksg~nyQ~~~t~vqpG-- 404 (460)
T KOG0285|consen 354 QNLSGHNAIINTLSVNSDG--VLVSGG-------------------------DNGSIMFWDWKSGHNYQRGQTIVQPG-- 404 (460)
T ss_pred hccccccceeeeeeeccCc--eEEEcC-------------------------CceEEEEEecCcCcccccccccccCC--
Confidence 2222211111222222222 122222 3333334443321 122232
Q ss_pred eeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCCC
Q 000736 386 FSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1323)
Q Consensus 386 ~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~ 425 (1323)
++.-...|.+-+|-..| ..|.++..|.+|++|.-+..
T Consensus 405 -Sl~sEagI~as~fDktg--~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 405 -SLESEAGIFASCFDKTG--SRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred -ccccccceeEEeecccC--ceEEeccCCcceEEEecccc
Confidence 23445678889998888 89999999999999998764
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-15 Score=173.52 Aligned_cols=255 Identities=9% Similarity=0.031 Sum_probs=161.7
Q ss_pred CEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEE-EEEeCCCcEEEEeCCCCeEE-
Q 000736 33 NRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEAL-IVGTSSGLLLLHSVDGNATE- 110 (1323)
Q Consensus 33 ~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~L-a~as~dG~I~lw~~~~~~~e- 110 (1323)
+.+++++.++.++.||+ .+++. +.. +.. +..+.+++|+|||+.+ ++++.++.|.+||..+++..
T Consensus 2 ~~~~s~~~d~~v~~~d~--~t~~~---~~~----~~~-----~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 67 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDT--ATLEV---TRT----FPV-----GQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIG 67 (300)
T ss_pred cEEEEecCCCEEEEEEC--CCCce---EEE----EEC-----CCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEE
Confidence 34556677889999998 45542 121 111 2356789999999977 56678899999999886543
Q ss_pred EeceecCcEEEEEEcCCCCeEEEEe-CCccEEEEeec-CceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEE
Q 000736 111 VVGRVEGGVRFISPSPDGDLLGVTT-GFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYF 188 (1323)
Q Consensus 111 ~vg~~~~~I~~~awSPDG~~LA~~s-~d~tV~l~t~~-~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~l 188 (1323)
.+.. ...+..++|+|||+.|++++ .+++|.+|+.. ...+..... ......++|+|||+++
T Consensus 68 ~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-----------------~~~~~~~~~~~dg~~l 129 (300)
T TIGR03866 68 TLPS-GPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-----------------GVEPEGMAVSPDGKIV 129 (300)
T ss_pred eccC-CCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-----------------CCCcceEEECCCCCEE
Confidence 2322 23467889999999887664 58899888632 222221111 1124679999999999
Q ss_pred EEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCC-eeEEEEEe
Q 000736 189 ATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNG-LERSSFDI 267 (1323)
Q Consensus 189 Atvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nG-l~~~~f~l 267 (1323)
+ +++. ....+.+||..++++..... .......++|+|+|++|+.++.. ...|.+|+... .....+..
T Consensus 130 ~-~~~~-----~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~-----~~~v~i~d~~~~~~~~~~~~ 197 (300)
T TIGR03866 130 V-NTSE-----TTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSEI-----GGTVSVIDVATRKVIKKITF 197 (300)
T ss_pred E-EEec-----CCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcCC-----CCEEEEEEcCcceeeeeeee
Confidence 8 5532 23568889997777765433 22344789999999988655432 25799999653 22232222
Q ss_pred ccC----CCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEE
Q 000736 268 NEQ----IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLIC 337 (1323)
Q Consensus 268 ~~~----~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~ 337 (1323)
..+ .......++|||||+.+.++..+. +.|.+|+..+++- ...+. .......+.|+|++.. |++
T Consensus 198 ~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~--~~i~v~d~~~~~~--~~~~~-~~~~~~~~~~~~~g~~-l~~ 265 (300)
T TIGR03866 198 EIPGVHPEAVQPVGIKLTKDGKTAFVALGPA--NRVAVVDAKTYEV--LDYLL-VGQRVWQLAFTPDEKY-LLT 265 (300)
T ss_pred cccccccccCCccceEECCCCCEEEEEcCCC--CeEEEEECCCCcE--EEEEE-eCCCcceEEECCCCCE-EEE
Confidence 211 112345799999999866554322 2699999976532 22221 1223377889998875 444
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-17 Score=190.27 Aligned_cols=272 Identities=12% Similarity=0.108 Sum_probs=200.2
Q ss_pred ceeEEeeec-CCCEEEEEeCCCcEEEEeccccc-ccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcE
Q 000736 22 ILQFSALDI-EQNRLFFASSANNIYSAQLSSFQ-NERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLL 99 (1323)
Q Consensus 22 ~~~~~~~d~-~~~~l~~~s~~~~i~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I 99 (1323)
.+.++-|-+ -+..|.+++-|+.|+.|++ .. +.. +.+ +.+| ...|.++.|+.+|..+.++|-|+.|
T Consensus 216 gvsai~~fp~~~hLlLS~gmD~~vklW~v--y~~~~~---lrt----f~gH----~k~Vrd~~~s~~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSGGMDGLVKLWNV--YDDRRC---LRT----FKGH----RKPVRDASFNNCGTSFLSASFDRFL 282 (503)
T ss_pred ccchhhhccceeeEEEecCCCceEEEEEE--ecCcce---ehh----hhcc----hhhhhhhhccccCCeeeeeecceee
Confidence 345555556 5677788888999999999 44 221 111 3334 3579999999999999999999999
Q ss_pred EEEeCCCCeEEEeceecCcEEEEEEcCCC-CeEEEEeCCccEEEEe-ecCceeeeeeecccCCCceeccCccccCCCCeE
Q 000736 100 LLHSVDGNATEVVGRVEGGVRFISPSPDG-DLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1323)
Q Consensus 100 ~lw~~~~~~~e~vg~~~~~I~~~awSPDG-~~LA~~s~d~tV~l~t-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~ 177 (1323)
++||.+||++....+.+..+.|+.|.||+ +++.+|+.|+.|+.|+ |..+.+.+..- |-+.+.
T Consensus 283 KlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~----------------hLg~i~ 346 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR----------------HLGAIL 346 (503)
T ss_pred eeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh----------------hhhhee
Confidence 99999999987655556779999999999 8888889999998886 55555444321 224679
Q ss_pred EEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeee-eccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEe
Q 000736 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS-SELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE 256 (1323)
Q Consensus 178 ~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t-~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e 256 (1323)
.|.|.++|++|+ +++ .++++|||+-..+..+.. ..+......+++-+|+|+.+|+=+-| +.|.+|.
T Consensus 347 ~i~F~~~g~rFi-ssS------Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~d------N~i~ifs 413 (503)
T KOG0282|consen 347 DITFVDEGRRFI-SSS------DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMD------NYIAIFS 413 (503)
T ss_pred eeEEccCCceEe-eec------cCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccC------ceEEEEe
Confidence 999999999999 543 358999999877766553 33344445789999999999977664 5688887
Q ss_pred CCCeeEEEEEec------cCC-CCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCc-EEEEEc
Q 000736 257 RNGLERSSFDIN------EQI-DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWH 328 (1323)
Q Consensus 257 ~nGl~~~~f~l~------~~~-~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~-~~v~Ws 328 (1323)
.+-. |.+. ++. .+--..+.|||||.+|++|..++ .|-+||+++-.-+ ..+..+ +.. +.+.||
T Consensus 414 ~~~~----~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG---~v~~wdwkt~kl~--~~lkah-~~~ci~v~wH 483 (503)
T KOG0282|consen 414 TVPP----FRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDG---KVNFWDWKTTKLV--SKLKAH-DQPCIGVDWH 483 (503)
T ss_pred cccc----cccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCc---cEEEeechhhhhh--hccccC-CcceEEEEec
Confidence 4321 1111 111 23456899999999999999999 8999999864321 233333 234 889999
Q ss_pred cCCCcEEEEEecCCcEE
Q 000736 329 PTKPLQLICWTLDGQIT 345 (1323)
Q Consensus 329 p~~~~~L~~~~~~g~~~ 345 (1323)
|..+..++....+|.+.
T Consensus 484 P~e~Skvat~~w~G~Ik 500 (503)
T KOG0282|consen 484 PVEPSKVATCGWDGLIK 500 (503)
T ss_pred CCCcceeEecccCceeE
Confidence 99988787777777664
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-16 Score=193.96 Aligned_cols=264 Identities=10% Similarity=0.089 Sum_probs=175.7
Q ss_pred EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecc--------------------------cC-----
Q 000736 111 VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEE--------------------------LA----- 159 (1323)
Q Consensus 111 ~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~--------------------------~~----- 159 (1323)
+-+.|++.|+++.|||||++||+|+.|+.|.||.-.-++........ ..
T Consensus 262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 33368999999999999999999999999999853221110000000 00
Q ss_pred --C--Ccee-------ccC---ccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCce
Q 000736 160 --E--GFDV-------HEP---ELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMG 225 (1323)
Q Consensus 160 --~--~~~V-------s~t---qf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v 225 (1323)
+ ...+ +++ -|.||.+.|..|+||-++ ||. +++. |+|||+|++..-+++.++. |...|
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLL-SSSM------DKTVRLWh~~~~~CL~~F~-HndfV 412 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLL-SSSM------DKTVRLWHPGRKECLKVFS-HNDFV 412 (712)
T ss_pred ccCCccccCCCccccccccchhhhhccchhheecccccCC-eeE-eccc------cccEEeecCCCcceeeEEe-cCCee
Confidence 0 0000 011 233899999999999887 455 4443 6999999998889999998 77889
Q ss_pred eEEEEcc-CCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEe
Q 000736 226 AVLEWMP-SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1323)
Q Consensus 226 ~slawsP-dG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~ 304 (1323)
++|+|+| |-+++.||+-| ..|++|..-..+.-.+ ..-..-|.+++|+|||+...+|+.+| ..+++++
T Consensus 413 TcVaFnPvDDryFiSGSLD------~KvRiWsI~d~~Vv~W---~Dl~~lITAvcy~PdGk~avIGt~~G---~C~fY~t 480 (712)
T KOG0283|consen 413 TCVAFNPVDDRYFISGSLD------GKVRLWSISDKKVVDW---NDLRDLITAVCYSPDGKGAVIGTFNG---YCRFYDT 480 (712)
T ss_pred EEEEecccCCCcEeecccc------cceEEeecCcCeeEee---hhhhhhheeEEeccCCceEEEEEecc---EEEEEEc
Confidence 9999999 66899999986 5799998643332221 11134699999999999999999999 8999999
Q ss_pred eCCeeEEEeEEEEecC-----C-cEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcC
Q 000736 305 SNNHWYLKYEIRYLRR-----D-GIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSL 378 (1323)
Q Consensus 305 ~n~~wylkq~l~~~~~-----~-~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~ 378 (1323)
.+...-....|..+.+ . .+.+.+.|..+..+.+.+.| ++|++.+.+...
T Consensus 481 ~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnD-------------------------SrIRI~d~~~~~ 535 (712)
T KOG0283|consen 481 EGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSND-------------------------SRIRIYDGRDKD 535 (712)
T ss_pred cCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCC-------------------------CceEEEeccchh
Confidence 8765444444443321 1 15566666555444443333 334444432211
Q ss_pred CCCCceeee-ecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCCC
Q 000736 379 MPPPMYLFS-LKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1323)
Q Consensus 379 vPppm~~~~-l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~ 425 (1323)
+ .+-+. ..-.+.-..-+|+.|| +.|++++.|..|++|+.+..
T Consensus 536 l---v~KfKG~~n~~SQ~~Asfs~Dg--k~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 536 L---VHKFKGFRNTSSQISASFSSDG--KHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred h---hhhhcccccCCcceeeeEccCC--CEEEEeecCceEEEEeCCCC
Confidence 1 01000 1112223467899999 99999999999999998753
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.1e-17 Score=173.17 Aligned_cols=249 Identities=17% Similarity=0.222 Sum_probs=184.0
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEec--CCCEEEEEeCCCcE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM--EKEALIVGTSSGLL 99 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~sp--dg~~La~as~dG~I 99 (1323)
.+-....|-=|.+|..||.|+.|...... . +.+ +++-.+|++| .+.|+-++|.- -|.+||+++-||.|
T Consensus 13 ~IHda~lDyygkrlATcsSD~tVkIf~v~--~-n~~---s~ll~~L~Gh----~GPVwqv~wahPk~G~iLAScsYDgkV 82 (299)
T KOG1332|consen 13 MIHDAQLDYYGKRLATCSSDGTVKIFEVR--N-NGQ---SKLLAELTGH----SGPVWKVAWAHPKFGTILASCSYDGKV 82 (299)
T ss_pred hhhHhhhhhhcceeeeecCCccEEEEEEc--C-CCC---ceeeeEecCC----CCCeeEEeecccccCcEeeEeecCceE
Confidence 55556677778999999999988777762 2 211 1122236766 58899999976 79999999999999
Q ss_pred EEEeCCCCeEE---EeceecCcEEEEEEcCC--CCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCC
Q 000736 100 LLHSVDGNATE---VVGRVEGGVRFISPSPD--GDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1323)
Q Consensus 100 ~lw~~~~~~~e---~vg~~~~~I~~~awSPD--G~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~ 174 (1323)
+||...+++.. ....|+..|++++|-|. |=+||.++.||+|.+.+-+-+ +...++.-+..|.-
T Consensus 83 IiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~------------g~w~t~ki~~aH~~ 150 (299)
T KOG1332|consen 83 IIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS------------GGWTTSKIVFAHEI 150 (299)
T ss_pred EEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC------------CCccchhhhhcccc
Confidence 99999887653 44557899999999997 568999999999988753211 00011111235667
Q ss_pred CeEEEEEecC---C-----------cEEEEeeccccccCCCCEEEEEECCCC--ceeeeeccCCCceeEEEEccCC----
Q 000736 175 FKSPISWRGD---G-----------KYFATLSEFCNSSKLHKRLKVWERDSG--TLQASSELKAFMGAVLEWMPSG---- 234 (1323)
Q Consensus 175 ~i~~isWspD---G-----------~~lAtvss~d~~~~~d~~IrVWd~~~G--~l~~t~e~~~~~v~slawsPdG---- 234 (1323)
++.+++|.|- | +.|| ++ +-|+.||||.-++| .+-.++++|.++|+.+||.|.-
T Consensus 151 GvnsVswapa~~~g~~~~~~~~~~~krlv-Sg------GcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~ 223 (299)
T KOG1332|consen 151 GVNSVSWAPASAPGSLVDQGPAAKVKRLV-SG------GCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPK 223 (299)
T ss_pred ccceeeecCcCCCccccccCcccccceee-cc------CCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCc
Confidence 8899999997 6 4577 44 34789999998555 4556789999999999999986
Q ss_pred CeEEEEecCCCCCCCCeEEEEeCCCeeEEEEE--eccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee-CCee
Q 000736 235 ANIAAVYDRKSENKCPSIVFYERNGLERSSFD--INEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS-NNHW 309 (1323)
Q Consensus 235 ~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~--l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~-n~~w 309 (1323)
..|||++.|+ +|.+|..+.. ..++. +-.+....++.++||+.|.+||+++.|. .|.+|--+ +.+|
T Consensus 224 s~iAS~SqDg------~viIwt~~~e-~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdN---kvtlwke~~~Gkw 291 (299)
T KOG1332|consen 224 STIASCSQDG------TVIIWTKDEE-YEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDN---KVTLWKENVDGKW 291 (299)
T ss_pred eeeEEecCCC------cEEEEEecCc-cCcccccccccCCcceEEEEEeccccEEEEecCCc---EEEEEEeCCCCcE
Confidence 3699999874 5999987632 22222 2122235699999999999999999888 89999876 4466
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.3e-17 Score=177.46 Aligned_cols=281 Identities=12% Similarity=0.136 Sum_probs=203.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCC-CCCCEEEEEEecCCCEEEEEeCCCcEE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLE-PGDSITAFDYLMEKEALIVGTSSGLLL 100 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~V~~v~~spdg~~La~as~dG~I~ 100 (1323)
.+.|..|.||++.|.++|-|+.|-.|+. .+++.. ..|..... ..|. -.+.|.++.||.|+++||+|+.||.|+
T Consensus 215 h~EcA~FSPDgqyLvsgSvDGFiEVWny--~~GKlr---KDLkYQAq-d~fMMmd~aVlci~FSRDsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSVDGFIEVWNY--TTGKLR---KDLKYQAQ-DNFMMMDDAVLCISFSRDSEMLASGSQDGKIK 288 (508)
T ss_pred chhheeeCCCCceEeeccccceeeeehh--ccchhh---hhhhhhhh-cceeecccceEEEeecccHHHhhccCcCCcEE
Confidence 5677889999999999999999999999 666641 11111100 1111 157899999999999999999999999
Q ss_pred EEeCCCCeEE--EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEE
Q 000736 101 LHSVDGNATE--VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1323)
Q Consensus 101 lw~~~~~~~e--~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~ 178 (1323)
+|.+.++.+- .--.|..||+|++||-|+..+.+++-|.++++-. ..++..+. .|++|...+..
T Consensus 289 vWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHG----lKSGK~LK-----------EfrGHsSyvn~ 353 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHG----LKSGKCLK-----------EFRGHSSYVNE 353 (508)
T ss_pred EEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEec----cccchhHH-----------HhcCccccccc
Confidence 9999998763 3336789999999999999999999999997632 12223322 35578888899
Q ss_pred EEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecc--CCCceeEEEEccCC-CeEEEEecCCCCCCCCeEEEE
Q 000736 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL--KAFMGAVLEWMPSG-ANIAAVYDRKSENKCPSIVFY 255 (1323)
Q Consensus 179 isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~--~~~~v~slawsPdG-~lIAs~s~d~~~~~~~~V~~~ 255 (1323)
..|.+||.++. +++ .|++||||+..++++.+|+.+ .+..|.++-.=|.. ..+..+.+ .++|.+.
T Consensus 354 a~ft~dG~~ii-saS------sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr------sntv~im 420 (508)
T KOG0275|consen 354 ATFTDDGHHII-SAS------SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR------SNTVYIM 420 (508)
T ss_pred eEEcCCCCeEE-Eec------CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC------CCeEEEE
Confidence 99999999998 443 268999999999999999875 45567777666654 34555554 3678889
Q ss_pred eCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEE
Q 000736 256 ERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQL 335 (1323)
Q Consensus 256 e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L 335 (1323)
+..|.....|.--....+.-.+...||.|+.+-..+.|+ .+.-+.+..+. |-..+..+..++..+.-||-... |
T Consensus 421 n~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~---vlYCF~~~sG~--LE~tl~VhEkdvIGl~HHPHqNl-l 494 (508)
T KOG0275|consen 421 NMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDG---VLYCFSVLSGK--LERTLPVHEKDVIGLTHHPHQNL-L 494 (508)
T ss_pred eccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCc---EEEEEEeecCc--eeeeeecccccccccccCcccch-h
Confidence 888877666643222233455677999999999999998 66656555443 44566666666666666765433 4
Q ss_pred EEEecCC
Q 000736 336 ICWTLDG 342 (1323)
Q Consensus 336 ~~~~~~g 342 (1323)
+..+.||
T Consensus 495 AsYsEDg 501 (508)
T KOG0275|consen 495 ASYSEDG 501 (508)
T ss_pred hhhcccc
Confidence 4444444
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-15 Score=163.00 Aligned_cols=294 Identities=13% Similarity=0.047 Sum_probs=198.1
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEeC-CCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe-ecCceeeee
Q 000736 76 DSITAFDYLMEKEALIVGTSSGLLLLHSV-DGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYEN 153 (1323)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~~-~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t-~~~d~~~e~ 153 (1323)
-.++-|.|..+|+.|-+++.|.++.+|-. ++.++-....|.+.|+|+..+-|.+.|+++++|+++++|+ ..+..+...
T Consensus 11 RplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~ 90 (327)
T KOG0643|consen 11 RPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATW 90 (327)
T ss_pred cccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEe
Confidence 47899999999999999999999999865 6666665556799999999999999999999999998875 333333332
Q ss_pred eecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCC-------ceeeeeccCCCcee
Q 000736 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG-------TLQASSELKAFMGA 226 (1323)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G-------~l~~t~e~~~~~v~ 226 (1323)
.. ...+..+.|+++|.+++ .++.+.. +..+.|-++|.+.. ++......++..+.
T Consensus 91 k~-----------------~~~Vk~~~F~~~gn~~l-~~tD~~m-g~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit 151 (327)
T KOG0643|consen 91 KT-----------------NSPVKRVDFSFGGNLIL-ASTDKQM-GYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKIT 151 (327)
T ss_pred ec-----------------CCeeEEEeeccCCcEEE-EEehhhc-CcceEEEEEEccCChhhhcccCceEEecCCcccee
Confidence 21 13568999999999887 5443322 34577889987532 21222223456678
Q ss_pred EEEEccCCCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee
Q 000736 227 VLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1323)
Q Consensus 227 slawsPdG~lIAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~ 305 (1323)
+.-|+|-|+.|.+|..+ ..|..|+ +||...-+ -...+...|++|.+|||.+++.+++.|. +-+|||+.
T Consensus 152 ~a~Wg~l~~~ii~Ghe~------G~is~~da~~g~~~v~--s~~~h~~~Ind~q~s~d~T~FiT~s~Dt---takl~D~~ 220 (327)
T KOG0643|consen 152 SALWGPLGETIIAGHED------GSISIYDARTGKELVD--SDEEHSSKINDLQFSRDRTYFITGSKDT---TAKLVDVR 220 (327)
T ss_pred eeeecccCCEEEEecCC------CcEEEEEcccCceeee--chhhhccccccccccCCcceEEecccCc---cceeeecc
Confidence 89999999999999875 4699999 56643221 1112356899999999999999999999 99999998
Q ss_pred CCeeEEEeEEEEecCCc-EEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEe-ecCCcCCCCCc
Q 000736 306 NNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVT-PLSLSLMPPPM 383 (1323)
Q Consensus 306 n~~wylkq~l~~~~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt-~l~~~~vPppm 383 (1323)
..... ++ |....+ .+.+.+|-... ++ ..+|+- ..+. . ..+++.=+.- .|-......
T Consensus 221 tl~v~--Kt--y~te~PvN~aaisP~~d~-Vi--lgGGqe-A~dV----T--------TT~~r~GKFEArFyh~i~eE-- 278 (327)
T KOG0643|consen 221 TLEVL--KT--YTTERPVNTAAISPLLDH-VI--LGGGQE-AMDV----T--------TTSTRAGKFEARFYHLIFEE-- 278 (327)
T ss_pred ceeeE--EE--eeecccccceecccccce-EE--ecCCce-eeee----e--------eecccccchhhhHHHHHHHH--
Confidence 75421 11 222334 67778886654 22 223432 1111 0 1111100000 000000000
Q ss_pred eeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECC
Q 000736 384 YLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1323)
Q Consensus 384 ~~~~l-~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~ 423 (1323)
....+ .|=++|++|||+|+| +..++++.||.|++.-++
T Consensus 279 EigrvkGHFGPINsvAfhPdG--ksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 279 EIGRVKGHFGPINSVAFHPDG--KSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred HhccccccccCcceeEECCCC--cccccCCCCceEEEEEec
Confidence 00011 366899999999999 999999999999998765
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.8e-16 Score=176.09 Aligned_cols=301 Identities=15% Similarity=0.140 Sum_probs=198.6
Q ss_pred EEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeee----cccC----CCceeccCccccCCCCeEEEE
Q 000736 109 TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPL----EELA----EGFDVHEPELSSSFSFKSPIS 180 (1323)
Q Consensus 109 ~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l----~~~~----~~~~Vs~tqf~~~~~~i~~is 180 (1323)
+..++.|.-.|.|+++|||++.+.+++.+++|.-| ++.++... ..+. ++.+..... ..|...+.+++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw----~v~tgk~~~~i~~~~ev~k~~~~~~k~~r-~~h~keil~~a 209 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKW----DVLTGKKDRYIIERDEVLKSHGNPLKESR-KGHVKEILTLA 209 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeee----ehhcCcccccccccchhhhhccCCCCccc-ccccceeEEEE
Confidence 55677788999999999999999999999999655 44333311 1100 111111111 26788899999
Q ss_pred EecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCe
Q 000736 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL 260 (1323)
Q Consensus 181 WspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl 260 (1323)
-|+||+||| .+. .++.|.||+.++++.+.++.+|.+.|.+++|+-.-+.+.|++.|. .|++|+.+-+
T Consensus 210 vS~Dgkyla-tgg------~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Dr------svkvw~~~~~ 276 (479)
T KOG0299|consen 210 VSSDGKYLA-TGG------RDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADR------SVKVWSIDQL 276 (479)
T ss_pred EcCCCcEEE-ecC------CCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCC------ceEEEehhHh
Confidence 999999999 653 468999999999999999999999999999999888888888864 5999986532
Q ss_pred eEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecC--CcEEEEEccCCCcEEEEE
Q 000736 261 ERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRR--DGIRFMWHPTKPLQLICW 338 (1323)
Q Consensus 261 ~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~--~~~~v~Wsp~~~~~L~~~ 338 (1323)
..-+ ++.+| +..|.+|.-..-++.+-++..|+ +++||.+..- .|. .|... +.-+++|=.+. .++++
T Consensus 277 s~ve-tlyGH-qd~v~~IdaL~reR~vtVGgrDr---T~rlwKi~ee----sql-ifrg~~~sidcv~~In~~--HfvsG 344 (479)
T KOG0299|consen 277 SYVE-TLYGH-QDGVLGIDALSRERCVTVGGRDR---TVRLWKIPEE----SQL-IFRGGEGSIDCVAFINDE--HFVSG 344 (479)
T ss_pred HHHH-HHhCC-ccceeeechhcccceEEeccccc---eeEEEecccc----cee-eeeCCCCCeeeEEEeccc--ceeec
Confidence 2111 12233 46788998888888898998999 9999998542 122 22221 22333333322 13444
Q ss_pred ecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEE
Q 000736 339 TLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLC 418 (1323)
Q Consensus 339 ~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~ 418 (1323)
+.+|.+. .|++. --+.|.+..+...+.|-+ ..+.++.||++|+-.|.. +++|+++.+|.|+
T Consensus 345 SdnG~Ia----LWs~~----------KKkplf~~~~AHgv~~~~---~~~~~~~Witsla~i~~s--dL~asGS~~G~vr 405 (479)
T KOG0299|consen 345 SDNGSIA----LWSLL----------KKKPLFTSRLAHGVIPEL---DPVNGNFWITSLAVIPGS--DLLASGSWSGCVR 405 (479)
T ss_pred cCCceEE----Eeeec----------ccCceeEeeccccccCCc---cccccccceeeeEecccC--ceEEecCCCCceE
Confidence 4444442 23322 011122222222222221 123345699999999998 9999999999999
Q ss_pred EEECCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEec
Q 000736 419 VVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHH 467 (1323)
Q Consensus 419 lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~ 467 (1323)
||...+..-. +.+..+.+ -.+.|..|+|+++|..|.++..
T Consensus 406 LW~i~~g~r~-------i~~l~~ls--~~GfVNsl~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 406 LWKIEDGLRA-------INLLYSLS--LVGFVNSLAFSNSGKRIVAGIG 445 (479)
T ss_pred EEEecCCccc-------cceeeecc--cccEEEEEEEccCCCEEEEecc
Confidence 9999753111 11111111 1347899999999997766543
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.6e-17 Score=170.72 Aligned_cols=253 Identities=18% Similarity=0.234 Sum_probs=182.4
Q ss_pred eecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEec--CCcEEEEe
Q 000736 114 RVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG--DGKYFATL 191 (1323)
Q Consensus 114 ~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWsp--DG~~lAtv 191 (1323)
.|++-|..+...--|+.||+++.|++|+++...-+.. ...+. .+.+|.++++.++|-. -|.+|| +
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~-s~ll~-----------~L~Gh~GPVwqv~wahPk~G~iLA-S 75 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ-SKLLA-----------ELTGHSGPVWKVAWAHPKFGTILA-S 75 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC-ceeee-----------EecCCCCCeeEEeecccccCcEee-E
Confidence 4677788777878899999999999998875321111 01111 1227788899999987 899999 5
Q ss_pred eccccccCCCCEEEEEECCCCceeee--eccCCCceeEEEEccC--CCeEEEEecCCCCCCCCeEEEEeC--C-CeeEEE
Q 000736 192 SEFCNSSKLHKRLKVWERDSGTLQAS--SELKAFMGAVLEWMPS--GANIAAVYDRKSENKCPSIVFYER--N-GLERSS 264 (1323)
Q Consensus 192 ss~d~~~~~d~~IrVWd~~~G~l~~t--~e~~~~~v~slawsPd--G~lIAs~s~d~~~~~~~~V~~~e~--n-Gl~~~~ 264 (1323)
+++ |++|-||.-++|+-... ...|++.|++|+|.|. |-+||+++.|+ +|.+++- + |....
T Consensus 76 csY------DgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG------~vsvl~~~~~g~w~t~- 142 (299)
T KOG1332|consen 76 CSY------DGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDG------KVSVLTYDSSGGWTTS- 142 (299)
T ss_pred eec------CceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCC------cEEEEEEcCCCCccch-
Confidence 555 48999999977754333 3458889999999997 56899999875 4666653 3 22211
Q ss_pred EEeccCCCCcEEEEEEccC---C-----------CeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccC
Q 000736 265 FDINEQIDSTVELLKWNCM---S-----------DLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPT 330 (1323)
Q Consensus 265 f~l~~~~~~~V~~laWSpD---g-----------~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~ 330 (1323)
.+..-|+..|++++|.|- | +.||+++-|. .|+||...+..|.+-+.+..|.+-...++|.|.
T Consensus 143 -ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn---~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~ 218 (299)
T KOG1332|consen 143 -KIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDN---LVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPS 218 (299)
T ss_pred -hhhhccccccceeeecCcCCCccccccCcccccceeeccCCcc---ceeeeecCCcchhhhhhhhhcchhhhhhhhccc
Confidence 122234567999999997 5 5699999888 999999999999887777776555588999998
Q ss_pred CCc---EEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCE
Q 000736 331 KPL---QLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNC 407 (1323)
Q Consensus 331 ~~~---~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~ 407 (1323)
.++ +++..++||++. +|... . ++..=+.|.+ . +++..++.|+||+.| +.
T Consensus 219 ~gl~~s~iAS~SqDg~vi----Iwt~~-~--------e~e~wk~tll-----------~--~f~~~~w~vSWS~sG--n~ 270 (299)
T KOG1332|consen 219 VGLPKSTIASCSQDGTVI----IWTKD-E--------EYEPWKKTLL-----------E--EFPDVVWRVSWSLSG--NI 270 (299)
T ss_pred cCCCceeeEEecCCCcEE----EEEec-C--------ccCccccccc-----------c--cCCcceEEEEEeccc--cE
Confidence 753 677777888764 45433 0 1111111110 0 367889999999999 99
Q ss_pred EEEEECCCcEEEEECCC
Q 000736 408 LAAILSDGCLCVVDLPA 424 (1323)
Q Consensus 408 LAs~s~Dgti~lw~~~~ 424 (1323)
||+...|+.|.+|.-+.
T Consensus 271 LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 271 LAVSGGDNKVTLWKENV 287 (299)
T ss_pred EEEecCCcEEEEEEeCC
Confidence 99999999999998764
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-16 Score=170.52 Aligned_cols=285 Identities=11% Similarity=0.072 Sum_probs=192.3
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC------------C-------eEEEeceecCcEEEEEEcCCCCeEEEEe
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDG------------N-------ATEVVGRVEGGVRFISPSPDGDLLGVTT 135 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~------------~-------~~e~vg~~~~~I~~~awSPDG~~LA~~s 135 (1323)
.+...+-+|||||..+|+|+.|-.|+|.|+.- + .+..+=.|-+.|+++.|.|-..+|++++
T Consensus 112 K~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~s 191 (430)
T KOG0640|consen 112 KSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGS 191 (430)
T ss_pred ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEecc
Confidence 45788999999999999999999999999851 0 1223334578899999999999999999
Q ss_pred CCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCcee
Q 000736 136 GFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQ 215 (1323)
Q Consensus 136 ~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~ 215 (1323)
.|++|++++-. ++.....+... .....+.+|+|.|-|.|++ +++ ...++|+||.++-++.
T Consensus 192 rD~tvKlFDfs-K~saKrA~K~~------------qd~~~vrsiSfHPsGefll-vgT------dHp~~rlYdv~T~Qcf 251 (430)
T KOG0640|consen 192 RDNTVKLFDFS-KTSAKRAFKVF------------QDTEPVRSISFHPSGEFLL-VGT------DHPTLRLYDVNTYQCF 251 (430)
T ss_pred CCCeEEEEecc-cHHHHHHHHHh------------hccceeeeEeecCCCceEE-Eec------CCCceeEEeccceeEe
Confidence 99999986421 11111111110 0113569999999999999 874 3579999999887776
Q ss_pred eeec---cCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEE-Eec-cCCCCcEEEEEEccCCCeeEEE
Q 000736 216 ASSE---LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSF-DIN-EQIDSTVELLKWNCMSDLLAAV 290 (1323)
Q Consensus 216 ~t~e---~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f-~l~-~~~~~~V~~laWSpDg~~LA~~ 290 (1323)
.... .|.+.|.++-+||.|++-++++.| +.|++||- ....-. ++. .|+...|.+..|..||+++.+.
T Consensus 252 vsanPd~qht~ai~~V~Ys~t~~lYvTaSkD------G~IklwDG--VS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsS 323 (430)
T KOG0640|consen 252 VSANPDDQHTGAITQVRYSSTGSLYVTASKD------GAIKLWDG--VSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSS 323 (430)
T ss_pred eecCcccccccceeEEEecCCccEEEEeccC------CcEEeecc--ccHHHHHHHHhhcCCceeeeEEEccCCeEEeec
Confidence 5543 477889999999999999999987 46999983 111100 111 3445679999999999999999
Q ss_pred EccCCCCeEEEEEeeCCeeEEEeEEEEecCCc-----EEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCC-eeEEEE
Q 000736 291 VRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-----IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMEN-STALVI 364 (1323)
Q Consensus 291 ~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~-----~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~-~~v~vi 364 (1323)
+.|. +|+||.+++.... ++..+....+ +...|.....+ + ..|+.. ..+..|
T Consensus 324 G~DS---~vkLWEi~t~R~l--~~YtGAg~tgrq~~rtqAvFNhtEdy----------------V--l~pDEas~slcsW 380 (430)
T KOG0640|consen 324 GKDS---TVKLWEISTGRML--KEYTGAGTTGRQKHRTQAVFNHTEDY----------------V--LFPDEASNSLCSW 380 (430)
T ss_pred CCcc---eeeeeeecCCceE--EEEecCCcccchhhhhhhhhcCccce----------------E--EccccccCceeec
Confidence 9998 9999999986532 1222110000 11111111111 0 001111 112223
Q ss_pred eCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECC
Q 000736 365 DGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1323)
Q Consensus 365 Dg~~l~lt~l~~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~ 423 (1323)
|. +.+. ......+.|.+.|..+.-||.+ .-+.+++.|..+++|--.
T Consensus 381 da--------Rtad---r~~l~slgHn~a~R~i~HSP~~--p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 381 DA--------RTAD---RVALLSLGHNGAVRWIVHSPVE--PAFMTCSDDFRARFWYRR 426 (430)
T ss_pred cc--------cchh---hhhhcccCCCCCceEEEeCCCC--Cceeeecccceeeeeeec
Confidence 32 2111 0112245789999999999999 899999999999999753
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-14 Score=173.60 Aligned_cols=384 Identities=13% Similarity=0.150 Sum_probs=243.6
Q ss_pred CEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEe
Q 000736 33 NRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVV 112 (1323)
Q Consensus 33 ~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e~v 112 (1323)
+.|..+++.+.+..|++ .++++ +.+ +.++ .+.|+++.=+|--+.+|+|..+|+|++.|+..+++-..
T Consensus 173 NKIvvGs~~G~lql~Nv--rt~K~---v~~----f~~~----~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~s 239 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNV--RTGKV---VYT----FQEF----FSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMS 239 (910)
T ss_pred eeEEEeecCCcEEEEEe--ccCcE---EEE----eccc----ccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEE
Confidence 56788889999999999 67765 332 3333 36899999999999999999999999999988765422
Q ss_pred ceec-CcEEEEEEcCCCCe-EEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEE
Q 000736 113 GRVE-GGVRFISPSPDGDL-LGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFAT 190 (1323)
Q Consensus 113 g~~~-~~I~~~awSPDG~~-LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAt 190 (1323)
=.++ +.|++++|.-||+- ||+++..|.+-+|+-+-..+..+... .|++++....|-|.-..+.
T Consensus 240 Fk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~n--------------ah~~sv~~~~fl~~epVl~- 304 (910)
T KOG1539|consen 240 FKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRN--------------AHYGSVTGATFLPGEPVLV- 304 (910)
T ss_pred EEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeec--------------cccCCcccceecCCCceEe-
Confidence 2344 88999999999986 56666679999997654443322211 3445666666666555555
Q ss_pred eeccccccCCCCEEEEE--ECCCC--ceeeeeccCCCceeEEEEc-cCCCeEEEEecCCC----------------C---
Q 000736 191 LSEFCNSSKLHKRLKVW--ERDSG--TLQASSELKAFMGAVLEWM-PSGANIAAVYDRKS----------------E--- 246 (1323)
Q Consensus 191 vss~d~~~~~d~~IrVW--d~~~G--~l~~t~e~~~~~v~slaws-PdG~lIAs~s~d~~----------------~--- 246 (1323)
+++ .|+.+|+| |..+| +++..-.+|..+-.+|.|- .+|..|-+++.|++ .
T Consensus 305 ta~------~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~ 378 (910)
T KOG1539|consen 305 TAG------ADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHN 378 (910)
T ss_pred ecc------CCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccc
Confidence 333 24555555 43344 3444445666666677765 66777766655532 0
Q ss_pred ------C----------------------------------CCCeEEEEeCCCeeEEEEEecc----CCCCcEEEEEEcc
Q 000736 247 ------N----------------------------------KCPSIVFYERNGLERSSFDINE----QIDSTVELLKWNC 282 (1323)
Q Consensus 247 ------~----------------------------------~~~~V~~~e~nGl~~~~f~l~~----~~~~~V~~laWSp 282 (1323)
. .+....-|+-...+.|+|.|.. +....+.+++-|+
T Consensus 379 ~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~ 458 (910)
T KOG1539|consen 379 KKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF 458 (910)
T ss_pred ccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec
Confidence 0 0122333443333445565641 1346799999999
Q ss_pred CCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEE---EEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEE-------Ee
Q 000736 283 MSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEI---RYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFI-------WT 352 (1323)
Q Consensus 283 Dg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l---~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~-------~~ 352 (1323)
.|.....|++.+ +|-+++++.+-. ...+ ..+....+.++-|..+.. ++..+.+|.+..++|. |.
T Consensus 459 CGNF~~IG~S~G---~Id~fNmQSGi~--r~sf~~~~ah~~~V~gla~D~~n~~-~vsa~~~Gilkfw~f~~k~l~~~l~ 532 (910)
T KOG1539|consen 459 CGNFVFIGYSKG---TIDRFNMQSGIH--RKSFGDSPAHKGEVTGLAVDGTNRL-LVSAGADGILKFWDFKKKVLKKSLR 532 (910)
T ss_pred cCceEEEeccCC---eEEEEEcccCee--ecccccCccccCceeEEEecCCCce-EEEccCcceEEEEecCCcceeeeec
Confidence 999999999988 899999986421 1111 011122256666554432 4444456665544432 11
Q ss_pred eeeC--------CCe-eEEEEeCCEEEEeecCCcCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEEC
Q 000736 353 TAVM--------ENS-TALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDL 422 (1323)
Q Consensus 353 ~~~~--------d~~-~v~viDg~~l~lt~l~~~~vPppm~~~~l-~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~ 422 (1323)
+... ..+ .+.+.|.-.|.+.|.....| .+.+ .|.+.|++.+||||| +.|++++-|++|++||+
T Consensus 533 l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kv-----vR~f~gh~nritd~~FS~Dg--rWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 533 LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKV-----VREFWGHGNRITDMTFSPDG--RWLISASMDSTIRTWDL 605 (910)
T ss_pred cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhh-----hHHhhccccceeeeEeCCCC--cEEEEeecCCcEEEEec
Confidence 1100 011 12233444455555432211 2344 489999999999999 99999999999999999
Q ss_pred CCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCeeEEEE
Q 000736 423 PAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRG 477 (1323)
Q Consensus 423 ~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~ 477 (1323)
++..++ . .+. -...+..+.|+|+|.+||+.+-+. +.+++|.
T Consensus 606 pt~~lI---D--~~~--------vd~~~~sls~SPngD~LAT~Hvd~-~gIylWs 646 (910)
T KOG1539|consen 606 PTGTLI---D--GLL--------VDSPCTSLSFSPNGDFLATVHVDQ-NGIYLWS 646 (910)
T ss_pred cCccee---e--eEe--------cCCcceeeEECCCCCEEEEEEecC-ceEEEEE
Confidence 875433 1 111 113678999999999999988653 4567774
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.2e-16 Score=172.57 Aligned_cols=320 Identities=13% Similarity=0.169 Sum_probs=195.6
Q ss_pred CCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCC----C---eEE---EeceecCcEEEEEEcCCCCeEEEEeCCccEEEE
Q 000736 75 GDSITAFDYLMEKE-ALIVGTSSGLLLLHSVDG----N---ATE---VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVM 143 (1323)
Q Consensus 75 ~~~V~~v~~spdg~-~La~as~dG~I~lw~~~~----~---~~e---~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~ 143 (1323)
...|.++.|.+.+. .||+|+.|.+|+||-++. + .++ .++.|+..|+++.|||+|++||+|+.+|+|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 45789999999887 999999999999998742 2 444 567789999999999999999999999999999
Q ss_pred eecCceee--eeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccC
Q 000736 144 THDWDLLY--ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK 221 (1323)
Q Consensus 144 t~~~d~~~--e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~ 221 (1323)
...-..+. +.+.... ...++.-....+|...+..++|+|||.+++ +++. +..+++||...|.++.++..|
T Consensus 93 k~~~~~~~~~d~e~~~~-ke~w~v~k~lr~h~~diydL~Ws~d~~~l~-s~s~------dns~~l~Dv~~G~l~~~~~dh 164 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLN-KEKWVVKKVLRGHRDDIYDLAWSPDSNFLV-SGSV------DNSVRLWDVHAGQLLAILDDH 164 (434)
T ss_pred EecCcCCccccchhhhC-ccceEEEEEecccccchhhhhccCCCceee-eeec------cceEEEEEeccceeEeecccc
Confidence 54311111 0000000 001111111226788899999999999999 6654 589999999999999999999
Q ss_pred CCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec----cCCC-------------CcEEEEEEccCC
Q 000736 222 AFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN----EQID-------------STVELLKWNCMS 284 (1323)
Q Consensus 222 ~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~----~~~~-------------~~V~~laWSpDg 284 (1323)
...+..++|-|-++.||+-+.|+. ......-|.+-+..++.-.++ .+.+ .--..++|+|||
T Consensus 165 ~~yvqgvawDpl~qyv~s~s~dr~--~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG 242 (434)
T KOG1009|consen 165 EHYVQGVAWDPLNQYVASKSSDRH--PEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDG 242 (434)
T ss_pred ccccceeecchhhhhhhhhccCcc--cceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCC
Confidence 999999999999999999888752 011111122222222211111 0001 124468999999
Q ss_pred CeeEEEEccC--CCC----eEEEEEeeCCeeEEEeEEEEec--CCc-EEEEEccCCCcEEEEEecCCcE--EEEEEEEee
Q 000736 285 DLLAAVVRFE--EYD----SVKICFFSNNHWYLKYEIRYLR--RDG-IRFMWHPTKPLQLICWTLDGQI--TTYNFIWTT 353 (1323)
Q Consensus 285 ~~LA~~~~d~--~~~----~V~LW~~~n~~wylkq~l~~~~--~~~-~~v~Wsp~~~~~L~~~~~~g~~--~~~~~~~~~ 353 (1323)
.+|.+...-- .++ +..+++.+. |++...-.+ ... ..+.++|--- .|.-....+.+ .-|..++
T Consensus 243 ~llvtPag~~~~g~~~~~n~tYvfsrk~----l~rP~~~lp~~~k~~lavr~~pVy~-elrp~~~~~~~~~lpyrlvf-- 315 (434)
T KOG1009|consen 243 SLLVTPAGLFKVGGGVFRNTSYVFSRKD----LKRPAARLPSPKKPALAVRFSPVYY-ELRPLSSEKFLFVLPYRLVF-- 315 (434)
T ss_pred cEEEcccceeeeCCceeeceeEeecccc----ccCceeecCCCCcceEEEEeeeeEE-EeccccccccccccccceEE--
Confidence 9998754321 111 223333322 222211111 111 4444544210 01100000000 0122222
Q ss_pred eeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCC
Q 000736 354 AVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1323)
Q Consensus 354 ~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~ 424 (1323)
++.--+.+++.+- ..+-|.+.-.--|=.++++++||+|| +.|++.+.||-..+..++.
T Consensus 316 --------aiAt~~svyvydt---q~~~P~~~v~nihy~~iTDiaws~dg--~~l~vSS~DGyCS~vtfe~ 373 (434)
T KOG1009|consen 316 --------AIATKNSVYVYDT---QTLEPLAVVDNIHYSAITDIAWSDDG--SVLLVSSTDGFCSLVTFEP 373 (434)
T ss_pred --------EEeecceEEEecc---ccccceEEEeeeeeeeecceeecCCC--cEEEEeccCCceEEEEEcc
Confidence 3333344444432 12335443222266789999999999 8999999999998887764
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-15 Score=169.82 Aligned_cols=279 Identities=13% Similarity=0.141 Sum_probs=189.8
Q ss_pred eeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCC---EEEEEeCCCcEEEEe
Q 000736 27 ALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKE---ALIVGTSSGLLLLHS 103 (1323)
Q Consensus 27 ~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~---~La~as~dG~I~lw~ 103 (1323)
+++.-++.|+++|=|+.+..||. .++. +.+ +.+| .+.|.+++|.--.+ .+++|+.|.+++||-
T Consensus 110 sv~~~~~~IltgsYDg~~riWd~---~Gk~---~~~----~~Gh----t~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~ 175 (423)
T KOG0313|consen 110 SVKGASKWILTGSYDGTSRIWDL---KGKS---IKT----IVGH----TGPIKSVAWVIKNSSSCLFVSASMDQTLRLWK 175 (423)
T ss_pred hhcccCceEEEeecCCeeEEEec---CCce---EEE----EecC----CcceeeeEEEecCCccceEEEecCCceEEEEE
Confidence 45555899999999999999998 3432 221 3444 46788888865444 499999999999998
Q ss_pred CCCCe--E---E-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccC------------CCceec
Q 000736 104 VDGNA--T---E-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELA------------EGFDVH 165 (1323)
Q Consensus 104 ~~~~~--~---e-~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~------------~~~~Vs 165 (1323)
.+.+. . . +.| |..+|-+++-++||..+++||.|.+|++|+..-+...+..-.... ...++
T Consensus 176 ~~~~~~~~~~~~~~~G-Hk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~- 253 (423)
T KOG0313|consen 176 WNVGENKVKALKVCRG-HKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL- 253 (423)
T ss_pred ecCchhhhhHHhHhcc-cccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCce-
Confidence 76532 1 1 235 699999999999999999999999999998322222221111110 00111
Q ss_pred cCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCC
Q 000736 166 EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKS 245 (1323)
Q Consensus 166 ~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~ 245 (1323)
....+|...|.+|-|++-+-.+ +++ .|.+||+||.++|.+..+... .....+++.+|..++||+|+.|+
T Consensus 254 -vtl~GHt~~Vs~V~w~d~~v~y--S~S------wDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr- 322 (423)
T KOG0313|consen 254 -VTLEGHTEPVSSVVWSDATVIY--SVS------WDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDR- 322 (423)
T ss_pred -EEecccccceeeEEEcCCCceE--eec------ccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCC-
Confidence 2344899999999999955443 333 468999999999998887653 33458999999999999999975
Q ss_pred CCCCCeEEEEeC-CCe-eEEEEEeccCCCCcEEEEEEccCCC-eeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCc
Q 000736 246 ENKCPSIVFYER-NGL-ERSSFDINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG 322 (1323)
Q Consensus 246 ~~~~~~V~~~e~-nGl-~~~~f~l~~~~~~~V~~laWSpDg~-~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~ 322 (1323)
.|++||+ +|. ..-.+.+-+| .++|.++.|||-.. +|++++.|+ ++++||+..-.--| ..|..|.+..
T Consensus 323 -----~irl~DPR~~~gs~v~~s~~gH-~nwVssvkwsp~~~~~~~S~S~D~---t~klWDvRS~k~pl-ydI~~h~DKv 392 (423)
T KOG0313|consen 323 -----HIRLWDPRTGDGSVVSQSLIGH-KNWVSSVKWSPTNEFQLVSGSYDN---TVKLWDVRSTKAPL-YDIAGHNDKV 392 (423)
T ss_pred -----ceeecCCCCCCCceeEEeeecc-hhhhhheecCCCCceEEEEEecCC---eEEEEEeccCCCcc-eeeccCCceE
Confidence 4999994 331 1111233343 57999999999776 689999999 99999997532111 2344432223
Q ss_pred EEEEEccCCCcEEEEEecCCcE
Q 000736 323 IRFMWHPTKPLQLICWTLDGQI 344 (1323)
Q Consensus 323 ~~v~Wsp~~~~~L~~~~~~g~~ 344 (1323)
.++.|...+ .++.+..|.++
T Consensus 393 l~vdW~~~~--~IvSGGaD~~l 412 (423)
T KOG0313|consen 393 LSVDWNEGG--LIVSGGADNKL 412 (423)
T ss_pred EEEeccCCc--eEEeccCcceE
Confidence 677776432 13444444444
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-15 Score=172.70 Aligned_cols=279 Identities=16% Similarity=0.145 Sum_probs=199.6
Q ss_pred CCCEEEEEEecCCCE-EEEEeCCCcEEEEeCCCCeE-EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeee
Q 000736 75 GDSITAFDYLMEKEA-LIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYE 152 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~-La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e 152 (1323)
.+.|.+++|||.... +|++ .+-.+.||+..+... ..+..+...|.++.|-.||++||.|...|.|+++ |..+.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt-~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vf----D~k~r 100 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVT-SSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVF----DMKSR 100 (487)
T ss_pred cCcceeEecCCCCCCceEEe-cccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEe----ccccH
Confidence 368999999995542 4444 456789999887543 4566788999999999999999999999999875 41111
Q ss_pred eeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEcc
Q 000736 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP 232 (1323)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsP 232 (1323)
..+. ++.+|...+..+.|+|++.... +++ +.|+.+++||..++..+....+|...|.+.+|+|
T Consensus 101 ~iLR-----------~~~ah~apv~~~~f~~~d~t~l-~s~-----sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~ 163 (487)
T KOG0310|consen 101 VILR-----------QLYAHQAPVHVTKFSPQDNTML-VSG-----SDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISP 163 (487)
T ss_pred HHHH-----------HHhhccCceeEEEecccCCeEE-Eec-----CCCceEEEEEcCCcEEEEEecCCcceeEeecccc
Confidence 1222 3446777889999999887766 443 2468999999988877667888999999999999
Q ss_pred CC-CeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEE
Q 000736 233 SG-ANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYL 311 (1323)
Q Consensus 233 dG-~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wyl 311 (1323)
-. .+++||+.| +.|++|+.--.. .......+...|.++.+=|.|+++|+++.+. |++||+..+.-.+
T Consensus 164 ~~~hivvtGsYD------g~vrl~DtR~~~--~~v~elnhg~pVe~vl~lpsgs~iasAgGn~----vkVWDl~~G~qll 231 (487)
T KOG0310|consen 164 ANDHIVVTGSYD------GKVRLWDTRSLT--SRVVELNHGCPVESVLALPSGSLIASAGGNS----VKVWDLTTGGQLL 231 (487)
T ss_pred CCCeEEEecCCC------ceEEEEEeccCC--ceeEEecCCCceeeEEEcCCCCEEEEcCCCe----EEEEEecCCceeh
Confidence 74 578899986 579999953221 1122223456799999999999999998765 9999998543211
Q ss_pred EeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCC
Q 000736 312 KYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFP 391 (1323)
Q Consensus 312 kq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~~~ 391 (1323)
. ...-|.+..+++....++ .+|..+..||.+.+++ +. + -+. .+.+..+
T Consensus 232 ~-~~~~H~KtVTcL~l~s~~-~rLlS~sLD~~VKVfd----~t--~--------~Kv----------------v~s~~~~ 279 (487)
T KOG0310|consen 232 T-SMFNHNKTVTCLRLASDS-TRLLSGSLDRHVKVFD----TT--N--------YKV----------------VHSWKYP 279 (487)
T ss_pred h-hhhcccceEEEEEeecCC-ceEeecccccceEEEE----cc--c--------eEE----------------EEeeecc
Confidence 1 111133444778777766 4577777777665432 11 0 001 1234568
Q ss_pred CCEEEEEEecCCCCCEEEEEECCCcEEEEE
Q 000736 392 TAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1323)
Q Consensus 392 ~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~ 421 (1323)
++|-+++.|||+ +.+++|.+||.+.+-+
T Consensus 280 ~pvLsiavs~dd--~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 280 GPVLSIAVSPDD--QTVVIGMSNGLVSIRR 307 (487)
T ss_pred cceeeEEecCCC--ceEEEecccceeeeeh
Confidence 899999999999 9999999999886653
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.5e-16 Score=183.19 Aligned_cols=262 Identities=17% Similarity=0.228 Sum_probs=204.0
Q ss_pred HHHHHHHHhhccHHHHHHHHHhcc----ChhHHHHHHHHh--cCCcccc--hHhHHHHhcCCchhccccHHHHhcCHHHH
Q 000736 879 EEALKHLLWLADSEAVYEAALGLY----DLNLAAIVALNS--QRDPKEF--LPYLQELESMPPLLMRYTIDLRLQRFENA 950 (1323)
Q Consensus 879 e~alk~l~~L~d~~~Ly~~ALg~y----D~~lal~VAq~s--qkDPkeY--LpfL~~L~~l~~~~~~~~Id~~L~rye~A 950 (1323)
++-|+||.--.=-.+||+.|=.+| ||+-|+.-..+- ++..-|. +.|-.++-++++.|..... +.|+|+.|
T Consensus 648 e~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~--~~~q~daa 725 (1636)
T KOG3616|consen 648 EEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLE--QIGQLDAA 725 (1636)
T ss_pred HHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHH--HHHhHHHH
Confidence 566777743333356777776555 445443322221 1111111 4566667777777777655 68999999
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHhcchHHHHhhc---CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhcCCHHHHHHHHH
Q 000736 951 LKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI---TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYR 1027 (1323)
Q Consensus 951 l~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~---~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~ 1027 (1323)
++||+++.. .-+|++..... +.|++|+.+. .|.......+-..|+|+.+.++|+-|..+|..++.+..|+.||.
T Consensus 726 inhfiea~~--~~kaieaai~a-kew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~ 802 (1636)
T KOG3616|consen 726 INHFIEANC--LIKAIEAAIGA-KEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYG 802 (1636)
T ss_pred HHHHHHhhh--HHHHHHHHhhh-hhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHh
Confidence 999999965 79999999999 9999999998 56666667788899999999999999999999999999999999
Q ss_pred HhCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCCch
Q 000736 1028 ASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRRED 1107 (1323)
Q Consensus 1028 ~ag~W~~al~lA~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~e~Av~~~i~~~~w~eA~rla~~~~~~d 1107 (1323)
++|.|..|+.+|.+.. .++....++..-|+.|.+.|+|.||+++|.. .|.|+.||.||-+.+..++.+||+.+|....
T Consensus 803 k~~kw~da~kla~e~~-~~e~t~~~yiakaedldehgkf~eaeqlyit-i~~p~~aiqmydk~~~~ddmirlv~k~h~d~ 880 (1636)
T KOG3616|consen 803 KAGKWEDAFKLAEECH-GPEATISLYIAKAEDLDEHGKFAEAEQLYIT-IGEPDKAIQMYDKHGLDDDMIRLVEKHHGDH 880 (1636)
T ss_pred ccccHHHHHHHHHHhc-CchhHHHHHHHhHHhHHhhcchhhhhheeEE-ccCchHHHHHHHhhCcchHHHHHHHHhChhh
Confidence 9999999999999865 7788888999999999999999999999999 9999999999999999999999999998444
Q ss_pred hHHH---HHHHH-----HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Q 000736 1108 LITK---VKHAS-----LECASSLIGEYKEGLEKVGKYLT------RYLAVRQR 1147 (1323)
Q Consensus 1108 Lie~---V~~~l-----~e~~~~~~e~l~e~~~~~~k~~~------RL~~vR~~ 1147 (1323)
+-++ ....+ +.+++...-...+.+..++.|+. -|+.-|.+
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriakte 934 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTE 934 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhcc
Confidence 4444 33333 23556666667888888888864 35555543
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.9e-16 Score=176.18 Aligned_cols=276 Identities=14% Similarity=0.188 Sum_probs=199.5
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEecee---cCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceee
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRV---EGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY 151 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e~vg~~---~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~ 151 (1323)
.+.+.++.|.++...|++|+.|..|++|+..+.+.+..+.. .++|+++.|.||+..+..+|.|+++.+|+-+ .
T Consensus 175 ~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd----~ 250 (459)
T KOG0288|consen 175 EGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD----S 250 (459)
T ss_pred ccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeecc----c
Confidence 57899999999999999999999999999998775533322 4669999999999999999999999888642 2
Q ss_pred eeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEc
Q 000736 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM 231 (1323)
Q Consensus 152 e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slaws 231 (1323)
....+ ++.+|.+.++++.|.-.-..++ +++ .|++||+||...+.+..+.-+.. ....|.-+
T Consensus 251 ~r~~~-----------TLsGHtdkVt~ak~~~~~~~vV-sgs------~DRtiK~WDl~k~~C~kt~l~~S-~cnDI~~~ 311 (459)
T KOG0288|consen 251 LRLRH-----------TLSGHTDKVTAAKFKLSHSRVV-SGS------ADRTIKLWDLQKAYCSKTVLPGS-QCNDIVCS 311 (459)
T ss_pred hhhhh-----------hhcccccceeeehhhcccccee-ecc------ccchhhhhhhhhhheeccccccc-cccceEec
Confidence 22222 2337888899999887766544 443 46999999997777766543322 23455555
Q ss_pred cCCCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeE
Q 000736 232 PSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1323)
Q Consensus 232 PdG~lIAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wy 310 (1323)
+..+.|+-.|+ +|+||+ +.+....+ .+ ..+.|.+|..|+||.-|.+.+.|. ++.+.|+.++.-
T Consensus 312 --~~~~~SgH~Dk------kvRfwD~Rs~~~~~s--v~--~gg~vtSl~ls~~g~~lLsssRDd---tl~viDlRt~eI- 375 (459)
T KOG0288|consen 312 --ISDVISGHFDK------KVRFWDIRSADKTRS--VP--LGGRVTSLDLSMDGLELLSSSRDD---TLKVIDLRTKEI- 375 (459)
T ss_pred --ceeeeeccccc------ceEEEeccCCceeeE--ee--cCcceeeEeeccCCeEEeeecCCC---ceeeeecccccE-
Confidence 55677777753 599999 55544332 33 345899999999999998888887 999999988642
Q ss_pred EEeEEEEec----CCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceee
Q 000736 311 LKYEIRYLR----RDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLF 386 (1323)
Q Consensus 311 lkq~l~~~~----~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~ 386 (1323)
.+.+.... .+.+.+.|||++.+ ++.++.||.+ ++|++. .|+..++-.
T Consensus 376 -~~~~sA~g~k~asDwtrvvfSpd~~Y-vaAGS~dgsv----~iW~v~----------tgKlE~~l~------------- 426 (459)
T KOG0288|consen 376 -RQTFSAEGFKCASDWTRVVFSPDGSY-VAAGSADGSV----YIWSVF----------TGKLEKVLS------------- 426 (459)
T ss_pred -EEEeeccccccccccceeEECCCCce-eeeccCCCcE----EEEEcc----------CceEEEEec-------------
Confidence 34443221 12377899999987 6677778876 467654 122111110
Q ss_pred eecC-CCCEEEEEEecCCCCCEEEEEECCCcEEEEE
Q 000736 387 SLKF-PTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1323)
Q Consensus 387 ~l~~-~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~ 421 (1323)
..+ +..|.+++|+|.| ..|++++.++.+.+|.
T Consensus 427 -~s~s~~aI~s~~W~~sG--~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 427 -LSTSNAAITSLSWNPSG--SGLLSADKQKAVTLWT 459 (459)
T ss_pred -cCCCCcceEEEEEcCCC--chhhcccCCcceEecC
Confidence 111 2269999999999 8999999999999994
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.7e-15 Score=154.77 Aligned_cols=241 Identities=16% Similarity=0.185 Sum_probs=170.2
Q ss_pred cCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCC
Q 000736 171 SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCP 250 (1323)
Q Consensus 171 ~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~ 250 (1323)
.+.+.|..+.|+.||+|..|++ .|++||+||+-.|.++.+..+|..-|-.++-+.|...+|+++.|+
T Consensus 15 ~~qgaV~avryN~dGnY~ltcG-------sdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk------ 81 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCG-------SDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDK------ 81 (307)
T ss_pred ccccceEEEEEccCCCEEEEcC-------CCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCc------
Confidence 3456789999999999988664 369999999999999999999999999999999999999998864
Q ss_pred eEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEcc
Q 000736 251 SIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHP 329 (1323)
Q Consensus 251 ~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp 329 (1323)
.|.+||.| |...+.| ++| .+.|+.++||.++.++++++-|. ++|+||......
T Consensus 82 ~v~vwDV~TGkv~Rr~--rgH-~aqVNtV~fNeesSVv~SgsfD~---s~r~wDCRS~s~-------------------- 135 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRRF--RGH-LAQVNTVRFNEESSVVASGSFDS---SVRLWDCRSRSF-------------------- 135 (307)
T ss_pred eEEEEEcccCeeeeec--ccc-cceeeEEEecCcceEEEeccccc---eeEEEEcccCCC--------------------
Confidence 69999975 4443333 333 56899999999999999999999 999999865211
Q ss_pred CCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEE
Q 000736 330 TKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLA 409 (1323)
Q Consensus 330 ~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LA 409 (1323)
.|.++.--..|| +-++...+.-+++-.-+.+++..+++...+ |+. -+..+|++|.||+|| +...
T Consensus 136 -ePiQildea~D~-------V~Si~v~~heIvaGS~DGtvRtydiR~G~l---~sD---y~g~pit~vs~s~d~--nc~L 199 (307)
T KOG0316|consen 136 -EPIQILDEAKDG-------VSSIDVAEHEIVAGSVDGTVRTYDIRKGTL---SSD---YFGHPITSVSFSKDG--NCSL 199 (307)
T ss_pred -CccchhhhhcCc-------eeEEEecccEEEeeccCCcEEEEEeeccee---ehh---hcCCcceeEEecCCC--CEEE
Confidence 011110000122 112222333444443334567777776543 221 257799999999999 8888
Q ss_pred EEECCCcEEEEECCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCeeEEEEe
Q 000736 410 AILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1323)
Q Consensus 410 s~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1323)
+++-|++|+|-|-++...++...|+.-. .-.+ .-++.+.++.+++++.+ ..+.+|.+
T Consensus 200 a~~l~stlrLlDk~tGklL~sYkGhkn~---------eykl-dc~l~qsdthV~sgSED--G~Vy~wdL 256 (307)
T KOG0316|consen 200 ASSLDSTLRLLDKETGKLLKSYKGHKNM---------EYKL-DCCLNQSDTHVFSGSED--GKVYFWDL 256 (307)
T ss_pred EeeccceeeecccchhHHHHHhcccccc---------eeee-eeeecccceeEEeccCC--ceEEEEEe
Confidence 8889999999999887766555664211 0011 12455566777777654 67888887
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.5e-13 Score=163.58 Aligned_cols=395 Identities=13% Similarity=0.148 Sum_probs=249.4
Q ss_pred CCCEEEEEEecC-CCEEEEEeCCCcEEEEeCCCCeE-EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCc-eee
Q 000736 75 GDSITAFDYLME-KEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWD-LLY 151 (1323)
Q Consensus 75 ~~~V~~v~~spd-g~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d-~~~ 151 (1323)
++.|+++.+-+. -..+++|+..|.+.|||+.+++. -...++.++|+++.=||-=..+|+|..+|+|.+.+--+| .+.
T Consensus 159 ~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~ 238 (910)
T KOG1539|consen 159 GDFITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILM 238 (910)
T ss_pred CCceeeEecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEE
Confidence 455888854332 26788999999999999998764 456667899999999999999999999999999874433 333
Q ss_pred eeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeec-cCCCceeEEEE
Q 000736 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-LKAFMGAVLEW 230 (1323)
Q Consensus 152 e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e-~~~~~v~slaw 230 (1323)
+.. ...+.|.+++||-||..+.++| +..|.+-+||.+.-+++.... .|.+.+..+.|
T Consensus 239 sFk----------------~d~g~VtslSFrtDG~p~las~------~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~f 296 (910)
T KOG1539|consen 239 SFK----------------QDWGRVTSLSFRTDGNPLLASG------RSNGDMAFWDLEKKKLINVTRNAHYGSVTGATF 296 (910)
T ss_pred EEE----------------ccccceeEEEeccCCCeeEEec------cCCceEEEEEcCCCeeeeeeeccccCCccccee
Confidence 322 1126789999999999776244 234889999996666766655 67777888888
Q ss_pred ccCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEc-cCCCeeEEEEccCC-------------
Q 000736 231 MPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWN-CMSDLLAAVVRFEE------------- 295 (1323)
Q Consensus 231 sPdG~lIAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWS-pDg~~LA~~~~d~~------------- 295 (1323)
-|.--.+.+++.|.. ..+-+||. +|. -+....+..|...-..|.|- .+|..+-+++.|+.
T Consensus 297 l~~epVl~ta~~DnS----lk~~vfD~~dg~-pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~ 371 (910)
T KOG1539|consen 297 LPGEPVLVTAGADNS----LKVWVFDSGDGV-PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQ 371 (910)
T ss_pred cCCCceEeeccCCCc----eeEEEeeCCCCc-chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhH
Confidence 888888888776632 33333441 110 00000111111122222222 22222222222220
Q ss_pred -------------------------------------------------CCeEEEEEeeCC---eeEEEeEEEEecCC--
Q 000736 296 -------------------------------------------------YDSVKICFFSNN---HWYLKYEIRYLRRD-- 321 (1323)
Q Consensus 296 -------------------------------------------------~~~V~LW~~~n~---~wylkq~l~~~~~~-- 321 (1323)
....+-|++.|. .|.|+.. ++...+
T Consensus 372 ~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~-~~~~~~~~ 450 (910)
T KOG1539|consen 372 ELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPK-RFKKDDIN 450 (910)
T ss_pred hhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCc-cccccCcc
Confidence 004566666542 2333211 010011
Q ss_pred cEEEEEccCCCcEEEEEecCCcEEEEEEEEeee------------------eCCCe--eEEEEeCCEEEEeecCCcCCCC
Q 000736 322 GIRFMWHPTKPLQLICWTLDGQITTYNFIWTTA------------------VMENS--TALVIDGSKILVTPLSLSLMPP 381 (1323)
Q Consensus 322 ~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~------------------~~d~~--~v~viDg~~l~lt~l~~~~vPp 381 (1323)
..+++-++=|.- ..+++..|.+..++..-.+. .++.. +|+..-...++.|+|+....
T Consensus 451 ~~av~vs~CGNF-~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l-- 527 (910)
T KOG1539|consen 451 ATAVCVSFCGNF-VFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL-- 527 (910)
T ss_pred eEEEEEeccCce-EEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcce--
Confidence 144555554443 34555567766544321111 22222 34443445689999987651
Q ss_pred CceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeE
Q 000736 382 PMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLL 461 (1323)
Q Consensus 382 pm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~l 461 (1323)
..++.....+..+..+... ..+|++..|-.|.++|..+.....++.| +.+.+..++|||||+.
T Consensus 528 ---~~~l~l~~~~~~iv~hr~s--~l~a~~~ddf~I~vvD~~t~kvvR~f~g------------h~nritd~~FS~DgrW 590 (910)
T KOG1539|consen 528 ---KKSLRLGSSITGIVYHRVS--DLLAIALDDFSIRVVDVVTRKVVREFWG------------HGNRITDMTFSPDGRW 590 (910)
T ss_pred ---eeeeccCCCcceeeeeehh--hhhhhhcCceeEEEEEchhhhhhHHhhc------------cccceeeeEeCCCCcE
Confidence 2356667778888888877 7899999999999999976443333444 4578999999999999
Q ss_pred EEEEecCCCCeeEEEEeecccCccccchhhhhhhhcccccccccccccccceeeeeecccCCcEEEEeeCCCCCceEEEE
Q 000736 462 LSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQ 541 (1323)
Q Consensus 462 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~q 541 (1323)
|++++-+ +++.+|.+.. + ...+-..++.+.+++++|| .++.++..
T Consensus 591 lisasmD--~tIr~wDlpt-~-------------------------------~lID~~~vd~~~~sls~SP-ngD~LAT~ 635 (910)
T KOG1539|consen 591 LISASMD--STIRTWDLPT-G-------------------------------TLIDGLLVDSPCTSLSFSP-NGDFLATV 635 (910)
T ss_pred EEEeecC--CcEEEEeccC-c-------------------------------ceeeeEecCCcceeeEECC-CCCEEEEE
Confidence 9998765 6888998732 1 1223455688899999999 88999877
Q ss_pred eeC-CeEEEEec
Q 000736 542 FHG-GKISEYMS 552 (1323)
Q Consensus 542 ~~d-G~v~~~~~ 552 (1323)
-.| .-||.|..
T Consensus 636 Hvd~~gIylWsN 647 (910)
T KOG1539|consen 636 HVDQNGIYLWSN 647 (910)
T ss_pred EecCceEEEEEc
Confidence 776 67888843
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.5e-15 Score=167.36 Aligned_cols=229 Identities=15% Similarity=0.161 Sum_probs=166.6
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCC-EEEEEeCCCcEE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKE-ALIVGTSSGLLL 100 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~-~La~as~dG~I~ 100 (1323)
.++++.|-+-.-.|.+|.-|+.+..+++....+.. +..+. |. ...|....|+|+|. .+++++...-..
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~---lqS~~--l~------~fPi~~a~f~p~G~~~i~~s~rrky~y 283 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPK---LQSIH--LE------KFPIQKAEFAPNGHSVIFTSGRRKYLY 283 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecCccChh---heeee--ec------cCccceeeecCCCceEEEecccceEEE
Confidence 78889999988999999888866555552233332 22211 33 34688999999999 888888888888
Q ss_pred EEeCCCCeEE----EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe-ecCceeeeeeecccCCCceeccCccccCCCC
Q 000736 101 LHSVDGNATE----VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSF 175 (1323)
Q Consensus 101 lw~~~~~~~e----~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1323)
.||+.+.++. ..|.-+..+.....||||++||+++..|-|.+.. +..+.+....+. +.
T Consensus 284 syDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie-----------------G~ 346 (514)
T KOG2055|consen 284 SYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE-----------------GV 346 (514)
T ss_pred EeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec-----------------cE
Confidence 9999986654 2333345688899999999999999999998874 444555444432 45
Q ss_pred eEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCc--eeEEEEccCCCeEEEEecCCCCCCCCeEE
Q 000736 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFM--GAVLEWMPSGANIAAVYDRKSENKCPSIV 253 (1323)
Q Consensus 176 i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~--v~slawsPdG~lIAs~s~d~~~~~~~~V~ 253 (1323)
+..+.|+.||+.|. ++ ++++.|.|||.+.-.++..+.. +|. ..+++-|++|.++|+|+. .+-|-
T Consensus 347 v~~~~fsSdsk~l~-~~------~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~------~GiVN 412 (514)
T KOG2055|consen 347 VSDFTFSSDSKELL-AS------GGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSD------SGIVN 412 (514)
T ss_pred EeeEEEecCCcEEE-EE------cCCceEEEEecCCcceEEEEee-cCccceeeeeecCCCceEEeccC------cceEE
Confidence 68999999999887 44 2457999999977777776642 222 378899999999999997 46788
Q ss_pred EEeCCCeeEEEEEeccC------CCCcEEEEEEccCCCeeEEEEccC
Q 000736 254 FYERNGLERSSFDINEQ------IDSTVELLKWNCMSDLLAAVVRFE 294 (1323)
Q Consensus 254 ~~e~nGl~~~~f~l~~~------~~~~V~~laWSpDg~~LA~~~~d~ 294 (1323)
+|+.|.-..+. -|.| -...|.+|+||||+++||+++.-.
T Consensus 413 IYd~~s~~~s~--~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~ 457 (514)
T KOG2055|consen 413 IYDGNSCFAST--NPKPIKTVDNLTTAITSLQFNHDAQILAIASRVK 457 (514)
T ss_pred EeccchhhccC--CCCchhhhhhhheeeeeeeeCcchhhhhhhhhcc
Confidence 99966432221 1111 134699999999999999998754
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-12 Score=170.25 Aligned_cols=366 Identities=18% Similarity=0.187 Sum_probs=206.2
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcE----EEEeCC-CCeEEEece--------ecCcEEEEEEcCCCCeEEEEeCCccEEE
Q 000736 76 DSITAFDYLMEKEALIVGTSSGLL----LLHSVD-GNATEVVGR--------VEGGVRFISPSPDGDLLGVTTGFGQILV 142 (1323)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I----~lw~~~-~~~~e~vg~--------~~~~I~~~awSPDG~~LA~~s~d~tV~l 142 (1323)
..++..+|.++...+.++.....+ .+.... +...+.+-. -.+.|.++.+-+|.+.|.++..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 457788888888776655554443 222211 111221111 1356999999999999999999999987
Q ss_pred EeecCce---eeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECC---------
Q 000736 143 MTHDWDL---LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD--------- 210 (1323)
Q Consensus 143 ~t~~~d~---~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~--------- 210 (1323)
...+-++ ..|.-. .-+++|.+.+||||++.|| +.+ +++++-+-+++
T Consensus 102 ~~~~~~~~~~~~E~VG---------------~vd~GI~a~~WSPD~Ella-~vT------~~~~l~~mt~~fd~i~E~~l 159 (928)
T PF04762_consen 102 VREDPDPDEDEIEIVG---------------SVDSGILAASWSPDEELLA-LVT------GEGNLLLMTRDFDPISEVPL 159 (928)
T ss_pred EEccCCCCCceeEEEE---------------EEcCcEEEEEECCCcCEEE-EEe------CCCEEEEEeccceEEEEeec
Confidence 6322111 111111 1246899999999999999 553 23444443330
Q ss_pred ----CCc--eeee--------e-------------c---c--------CCCceeEEEEccCCCeEEEEecCCCCCCCCeE
Q 000736 211 ----SGT--LQAS--------S-------------E---L--------KAFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1323)
Q Consensus 211 ----~G~--l~~t--------~-------------e---~--------~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V 252 (1323)
-|+ ..+. + + + .+..-..|+|+.||+++|+.+-+...+....+
T Consensus 160 ~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~i 239 (928)
T PF04762_consen 160 DSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVI 239 (928)
T ss_pred CccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEE
Confidence 011 1100 0 0 0 12233689999999999999875432235789
Q ss_pred EEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCC-c-EEEEEccC
Q 000736 253 VFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRD-G-IRFMWHPT 330 (1323)
Q Consensus 253 ~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~-~-~~v~Wsp~ 330 (1323)
++|+|+|..+..- ++-.+--..|+|-|.|.++|+.-.-.+.+.|-+|..+..+. -...+++.+.+ . ..+.|+++
T Consensus 240 RVy~ReG~L~stS---E~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrh-geF~l~~~~~~~~v~~l~Wn~d 315 (928)
T PF04762_consen 240 RVYSREGELQSTS---EPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRH-GEFTLRFDPEEEKVIELAWNSD 315 (928)
T ss_pred EEECCCceEEecc---ccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEe-eeEecCCCCCCceeeEEEECCC
Confidence 9999999765421 12122334799999999999988744445788888765332 11233332222 2 67889988
Q ss_pred CCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecC--CCCEEEEEEecCCCCCEE
Q 000736 331 KPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKF--PTAVTEMAFYSKSSKNCL 408 (1323)
Q Consensus 331 ~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~~--~~~V~~VaFSpdg~~~~L 408 (1323)
+.. |+++..+. +. .|.+. + -+ |=++ +++.+ ...+..+.|+|... ..|
T Consensus 316 s~i-LAv~~~~~-vq----LWt~~--N---------YH---WYLK----------qei~~~~~~~~~~~~Wdpe~p-~~L 364 (928)
T PF04762_consen 316 SEI-LAVWLEDR-VQ----LWTRS--N---------YH---WYLK----------QEIRFSSSESVNFVKWDPEKP-LRL 364 (928)
T ss_pred CCE-EEEEecCC-ce----EEEee--C---------CE---EEEE----------EEEEccCCCCCCceEECCCCC-CEE
Confidence 765 66665432 22 23221 0 00 0010 12222 22344588999753 778
Q ss_pred EEEECCCcEEEEECCCCCccccccCCceeEeeeccccccCcEEEEEEecCC-eEEEEEecCCCCeeEEEEeecccCcccc
Q 000736 409 AAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSH-LLLSVSHHGPRHSNYFRGATLNEDGLLG 487 (1323)
Q Consensus 409 As~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~-~lla~~~~~~~~~~~~~~~~~~~~~~~~ 487 (1323)
.+++.+|.+..+++.-. ...+.+. .|++ -.+|+ -+| +.+.+-.+..
T Consensus 365 ~v~t~~g~~~~~~~~~~----v~~s~~~-------------------~~~D~g~vaV-IDG--~~lllTpf~~------- 411 (928)
T PF04762_consen 365 HVLTSNGQYEIYDFAWD----VSRSPGS-------------------SPNDNGTVAV-IDG--NKLLLTPFRR------- 411 (928)
T ss_pred EEEecCCcEEEEEEEEE----EEecCCC-------------------CccCceEEEE-EeC--CeEEEecccc-------
Confidence 88988888877776311 0001000 0111 11221 122 2333322211
Q ss_pred chhhhhhhhcccccccccccccccceeeeeecccCCcEEEEeeCCCCCceEEEEeeCCeEEEEec
Q 000736 488 FYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMS 552 (1323)
Q Consensus 488 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~q~~dG~v~~~~~ 552 (1323)
..+|-+++ .....+++.|..+++++ ++..+++.+.||++..|..
T Consensus 412 ------------a~VPPPMs--------~~~l~~~~~v~~vaf~~-~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 412 ------------AVVPPPMS--------SYELELPSPVNDVAFSP-SNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred ------------cCCCchHh--------ceEEcCCCCcEEEEEeC-CCCeEEEEECCCCEEEEEe
Confidence 12232222 22456688899999887 6666999999999998863
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.7e-15 Score=164.33 Aligned_cols=240 Identities=13% Similarity=0.091 Sum_probs=189.2
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1323)
++-++++||-+.-+.++|.|..|..||+ .++.. +. + +.+| -..|..+++|+--.+|-+++.|+.|+-
T Consensus 153 WVr~vavdP~n~wf~tgs~DrtikIwDl--atg~L--kl-t----ltGh----i~~vr~vavS~rHpYlFs~gedk~VKC 219 (460)
T KOG0285|consen 153 WVRSVAVDPGNEWFATGSADRTIKIWDL--ATGQL--KL-T----LTGH----IETVRGVAVSKRHPYLFSAGEDKQVKC 219 (460)
T ss_pred eEEEEeeCCCceeEEecCCCceeEEEEc--ccCeE--EE-e----ecch----hheeeeeeecccCceEEEecCCCeeEE
Confidence 8899999998777777888999999999 67764 22 2 4544 247999999999999999999999999
Q ss_pred EeCCCCeE-E-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEE
Q 000736 102 HSVDGNAT-E-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1323)
Q Consensus 102 w~~~~~~~-e-~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~i 179 (1323)
||+...++ . --| |-.+|.|++.-|--..|++++.|.++++|+ ..+....+.. .||+..|.++
T Consensus 220 wDLe~nkvIR~YhG-HlS~V~~L~lhPTldvl~t~grDst~RvWD----iRtr~~V~~l-----------~GH~~~V~~V 283 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHG-HLSGVYCLDLHPTLDVLVTGGRDSTIRVWD----IRTRASVHVL-----------SGHTNPVASV 283 (460)
T ss_pred EechhhhhHHHhcc-ccceeEEEeccccceeEEecCCcceEEEee----ecccceEEEe-----------cCCCCcceeE
Confidence 99987654 3 445 478899999999999999999999998874 3333333332 2778888999
Q ss_pred EEec-CCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000736 180 SWRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1323)
Q Consensus 180 sWsp-DG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~n 258 (1323)
.+.| |++ +. ++|. |.+||+||...|+...++..|...+.+++.+|.-+.+||++.| .|+-|..
T Consensus 284 ~~~~~dpq-vi-t~S~------D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-------nik~w~~- 347 (460)
T KOG0285|consen 284 MCQPTDPQ-VI-TGSH------DSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-------NIKQWKL- 347 (460)
T ss_pred EeecCCCc-eE-EecC------CceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-------cceeccC-
Confidence 9987 555 45 4544 5899999998999999999999999999999999999999875 4777762
Q ss_pred CeeEEEEEec-cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEE
Q 000736 259 GLERSSFDIN-EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLK 312 (1323)
Q Consensus 259 Gl~~~~f~l~-~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylk 312 (1323)
-+++|.-. ..+..-|++|+-+.|| ++.+|+.++ ++.+||+...|-|..
T Consensus 348 --p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng---~~~fwdwksg~nyQ~ 396 (460)
T KOG0285|consen 348 --PEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNG---SIMFWDWKSGHNYQR 396 (460)
T ss_pred --CccchhhccccccceeeeeeeccCc-eEEEcCCce---EEEEEecCcCccccc
Confidence 34444222 1234578999999998 556677777 899999998776543
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.4e-15 Score=161.88 Aligned_cols=304 Identities=14% Similarity=0.097 Sum_probs=212.8
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe--ecCceee
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT--HDWDLLY 151 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t--~~~d~~~ 151 (1323)
.+.|+.++--.....+.++|+|.+-.||.++++.+- ....|.+.|++++|+|.|.+++++++|++--+|. -.|.+-.
T Consensus 148 kDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~ 227 (481)
T KOG0300|consen 148 KDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPS 227 (481)
T ss_pred ccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCC
Confidence 468888888777788999999999999999998764 4444689999999999999999999999998884 3454322
Q ss_pred eee---ecccC----CCc--------------eec--cCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEE
Q 000736 152 ENP---LEELA----EGF--------------DVH--EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWE 208 (1323)
Q Consensus 152 e~~---l~~~~----~~~--------------~Vs--~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd 208 (1323)
... ....+ ..+ .|- ...|.+|...+.+..|-.-|+..+ .+++ ||+--+||
T Consensus 228 ~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~v-TaSW------DRTAnlwD 300 (481)
T KOG0300|consen 228 NNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMV-TASW------DRTANLWD 300 (481)
T ss_pred CCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceee-eeec------cccceeee
Confidence 100 00000 000 110 234558888889999999999988 5554 59999999
Q ss_pred CCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeE
Q 000736 209 RDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLA 288 (1323)
Q Consensus 209 ~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA 288 (1323)
.++|++...+.+|+.-...++=.|..+++.++++|. +.++||-....+..-.+.+ ++..|.++.|+-|-+ ++
T Consensus 301 VEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDt------TFRLWDFReaI~sV~VFQG-HtdtVTS~vF~~dd~-vV 372 (481)
T KOG0300|consen 301 VETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDT------TFRLWDFREAIQSVAVFQG-HTDTVTSVVFNTDDR-VV 372 (481)
T ss_pred eccCceeccccCcchhccccccCCcceEEEEeccCc------eeEeccchhhcceeeeecc-cccceeEEEEecCCc-ee
Confidence 999999999999999888999999999999999974 5999984322222212223 367899999998765 56
Q ss_pred EEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCE
Q 000736 289 AVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSK 368 (1323)
Q Consensus 289 ~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~ 368 (1323)
+++.|. +|++|++.|..--| .+|+.. +| ..++.+.. ++.++ +.--|...
T Consensus 373 SgSDDr---TvKvWdLrNMRspl-ATIRtd---------S~--~NRvavs~-g~~iI---------------AiPhDNRq 421 (481)
T KOG0300|consen 373 SGSDDR---TVKVWDLRNMRSPL-ATIRTD---------SP--ANRVAVSK-GHPII---------------AIPHDNRQ 421 (481)
T ss_pred ecCCCc---eEEEeeeccccCcc-eeeecC---------Cc--cceeEeec-CCceE---------------EeccCCce
Confidence 888888 99999999975211 112110 11 12233332 12121 11125566
Q ss_pred EEEeecCCcCCCC-CceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCCC
Q 000736 369 ILVTPLSLSLMPP-PMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1323)
Q Consensus 369 l~lt~l~~~~vPp-pm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~ 425 (1323)
+.+.++.+..+|. |-.. .-.|..-|.++||+-+..-.-|.+++-|..+.-|++..+
T Consensus 422 vRlfDlnG~RlaRlPrts-RqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 422 VRLFDLNGNRLARLPRTS-RQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred EEEEecCCCccccCCccc-ccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 7777777655442 2221 124677899999988764456778889999999998754
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-14 Score=180.95 Aligned_cols=291 Identities=16% Similarity=0.174 Sum_probs=192.2
Q ss_pred EEEEEcCCCC-eEEEEeCCccEEEEeecCcee-----eeeeecccC-CCceeccCccccCCCCeEEEEEecCCcE----E
Q 000736 120 RFISPSPDGD-LLGVTTGFGQILVMTHDWDLL-----YENPLEELA-EGFDVHEPELSSSFSFKSPISWRGDGKY----F 188 (1323)
Q Consensus 120 ~~~awSPDG~-~LA~~s~d~tV~l~t~~~d~~-----~e~~l~~~~-~~~~Vs~tqf~~~~~~i~~isWspDG~~----l 188 (1323)
...||||++. +||+|+..+.+- ..|..- .+....... +-+++... ..+.+...++|.+-|.- +
T Consensus 10 a~~awSp~~~~~laagt~aq~~D---~sfst~~slEifeld~~~~~~dlk~~~s~---~s~~rF~kL~W~~~g~~~~GlI 83 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFD---ASFSTSASLEIFELDFSDESSDLKPVGSL---QSSNRFNKLAWGSYGSHSHGLI 83 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccc---cccccccccceeeecccCccccccccccc---cccccceeeeecccCCCcccee
Confidence 3578999998 788887666542 222111 111111111 11233110 12345678999988876 5
Q ss_pred EEeeccccccCCCCEEEEEECCC---C---ceeeeeccCCCceeEEEEccCCC-eEEEEecCCCCCCCCeEEEEeCCCee
Q 000736 189 ATLSEFCNSSKLHKRLKVWERDS---G---TLQASSELKAFMGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYERNGLE 261 (1323)
Q Consensus 189 Atvss~d~~~~~d~~IrVWd~~~---G---~l~~t~e~~~~~v~slawsPdG~-lIAs~s~d~~~~~~~~V~~~e~nGl~ 261 (1323)
| ++ .+||.|-+||... + .++.+...|.|.|..|.|+|.+. ++|||+.+ ..|.|||.|...
T Consensus 84 a--GG-----~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~------geI~iWDlnn~~ 150 (1049)
T KOG0307|consen 84 A--GG-----LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADD------GEILIWDLNKPE 150 (1049)
T ss_pred e--cc-----ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCC------CcEEEeccCCcC
Confidence 5 33 4579999999843 1 24455667999999999999866 99999875 579999988532
Q ss_pred EEEEEeccC-CCCcEEEEEEcc-CCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecC--Cc--EEEEEccCCCcEE
Q 000736 262 RSSFDINEQ-IDSTVELLKWNC-MSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRR--DG--IRFMWHPTKPLQL 335 (1323)
Q Consensus 262 ~~~f~l~~~-~~~~V~~laWSp-Dg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~--~~--~~v~Wsp~~~~~L 335 (1323)
..|+.... ....|..|+||- ...+||+++.++ .+-|||+... ++.|.+... .. ..+.|||+...+|
T Consensus 151 -tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg---~~~iWDlr~~----~pii~ls~~~~~~~~S~l~WhP~~aTql 222 (1049)
T KOG0307|consen 151 -TPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSG---RAVIWDLRKK----KPIIKLSDTPGRMHCSVLAWHPDHATQL 222 (1049)
T ss_pred -CCCCCCCCCCcccceEeccchhhhHHhhccCCCC---CceeccccCC----CcccccccCCCccceeeeeeCCCCceee
Confidence 22333211 235799999996 577999999997 7999999864 234444322 12 5799999998887
Q ss_pred EEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECC
Q 000736 336 ICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSD 414 (1323)
Q Consensus 336 ~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l-~~~~~V~~VaFSpdg~~~~LAs~s~D 414 (1323)
.+.+.|.. ...|++||+|-...|- +.+ .|...|.+++|++.+. .+|++.+.|
T Consensus 223 ~~As~dd~----------------------~PviqlWDlR~assP~----k~~~~H~~GilslsWc~~D~-~lllSsgkD 275 (1049)
T KOG0307|consen 223 LVASGDDS----------------------APVIQLWDLRFASSPL----KILEGHQRGILSLSWCPQDP-RLLLSSGKD 275 (1049)
T ss_pred eeecCCCC----------------------CceeEeecccccCCch----hhhcccccceeeeccCCCCc-hhhhcccCC
Confidence 77765421 1347889988776653 344 4788899999999874 678889999
Q ss_pred CcEEEEECCCCCccccccCCceeEeeeccccccCcEEEEEEecCCe-EEEEEecCCCCeeEEEEe
Q 000736 415 GCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHL-LLSVSHHGPRHSNYFRGA 478 (1323)
Q Consensus 415 gti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~-lla~~~~~~~~~~~~~~~ 478 (1323)
+.|.+|+.++.+.+.++. ...+++..+.|.|..- ++|+++-+ +.+-++++
T Consensus 276 ~~ii~wN~~tgEvl~~~p------------~~~nW~fdv~w~pr~P~~~A~asfd--gkI~I~sl 326 (1049)
T KOG0307|consen 276 NRIICWNPNTGEVLGELP------------AQGNWCFDVQWCPRNPSVMAAASFD--GKISIYSL 326 (1049)
T ss_pred CCeeEecCCCceEeeecC------------CCCcceeeeeecCCCcchhhhheec--cceeeeee
Confidence 999999998754432221 1346889999988754 45544432 45555544
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.2e-15 Score=177.66 Aligned_cols=272 Identities=18% Similarity=0.192 Sum_probs=191.6
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEeCCCC--eEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeec-Cceeee
Q 000736 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGN--ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLLYE 152 (1323)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~~~~~--~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~-~d~~~e 152 (1323)
+.-+.|.|-|+|++|++++.||.|++|+.... ..+..-. .+....+..-++..|++++.+++|...+.. ++. +
T Consensus 14 ~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~--~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~--~ 89 (933)
T KOG1274|consen 14 GGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI--SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEE--D 89 (933)
T ss_pred CceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc--cCceeEEEeecccceEEeeccceEEEeeCCCCCc--c
Confidence 46899999999999999999999999997653 2333222 334455566678899999999999886421 110 0
Q ss_pred eeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEcc
Q 000736 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP 232 (1323)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsP 232 (1323)
..+.. ..-.+..++++++|+++| .++ .|-.||+-+..++....++.+|++.|.+|+|.|
T Consensus 90 ~iL~R--------------ftlp~r~~~v~g~g~~ia-ags------dD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p 148 (933)
T KOG1274|consen 90 TILAR--------------FTLPIRDLAVSGSGKMIA-AGS------DDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP 148 (933)
T ss_pred ceeee--------------eeccceEEEEecCCcEEE-eec------CceeEEEEeccccchheeecccCCceeeeeEcC
Confidence 00000 112457899999999999 664 357899999988888899999999999999999
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEecc--C----C-CCcEEEEEEccCCCeeEEEEccCCCCeEEEEEe
Q 000736 233 SGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINE--Q----I-DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1323)
Q Consensus 233 dG~lIAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~--~----~-~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~ 304 (1323)
.|++||+++.+ +.|.+|+.. |... +++.+ + . ...+..++|+|+|-.||+.+.|+ +|++++.
T Consensus 149 ~~~fLAvss~d------G~v~iw~~~~~~~~--~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~---~Vkvy~r 217 (933)
T KOG1274|consen 149 KGNFLAVSSCD------GKVQIWDLQDGILS--KTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN---TVKVYSR 217 (933)
T ss_pred CCCEEEEEecC------ceEEEEEcccchhh--hhcccCCccccccccceeeeeeecCCCCeEEeeccCC---eEEEEcc
Confidence 99999999986 469999954 2111 12220 1 1 23467899999988888888777 8999999
Q ss_pred eCCeeEEEeEEEEecC-Cc-EEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCC
Q 000736 305 SNNHWYLKYEIRYLRR-DG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPP 382 (1323)
Q Consensus 305 ~n~~wylkq~l~~~~~-~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPpp 382 (1323)
.+|. +...++.... .. ..+.|+|.|.+ |+..+.+|++. +|++..++
T Consensus 218 ~~we--~~f~Lr~~~~ss~~~~~~wsPnG~Y-iAAs~~~g~I~----vWnv~t~~------------------------- 265 (933)
T KOG1274|consen 218 KGWE--LQFKLRDKLSSSKFSDLQWSPNGKY-IAASTLDGQIL----VWNVDTHE------------------------- 265 (933)
T ss_pred CCce--eheeecccccccceEEEEEcCCCcE-EeeeccCCcEE----EEecccch-------------------------
Confidence 8853 2223332111 22 67899999765 88888788775 45443111
Q ss_pred ceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEE
Q 000736 383 MYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1323)
Q Consensus 383 m~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~ 421 (1323)
.-++...|.+++|-|+. +.+-..+..|+..+|-
T Consensus 266 ----~~~~~~~Vc~~aw~p~~--n~it~~~~~g~~~~~~ 298 (933)
T KOG1274|consen 266 ----RHEFKRAVCCEAWKPNA--NAITLITALGTLGVSP 298 (933)
T ss_pred ----hccccceeEEEecCCCC--CeeEEEeeccccccCh
Confidence 11245678999999998 7777666766666554
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.7e-15 Score=173.19 Aligned_cols=308 Identities=15% Similarity=0.138 Sum_probs=201.9
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCe--EEEEeCCccEEEEeec-Cceee
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDL--LGVTTGFGQILVMTHD-WDLLY 151 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~--LA~~s~d~tV~l~t~~-~d~~~ 151 (1323)
.+.|++|.-.|-|+.||+|+.||+|+||.+.|+.+--.-..++.|.|++|+|.+.. ||++.+.. +.+.+-. ++-+.
T Consensus 400 tg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e 478 (733)
T KOG0650|consen 400 TGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLE 478 (733)
T ss_pred CCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhh
Confidence 47899999999999999999999999999999876533345788999999999875 66666654 5444322 21110
Q ss_pred ----eeeecccC-----CCceec-----cCccc-------cCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECC
Q 000736 152 ----ENPLEELA-----EGFDVH-----EPELS-------SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD 210 (1323)
Q Consensus 152 ----e~~l~~~~-----~~~~Vs-----~tqf~-------~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~ 210 (1323)
...+.... +.+.+. ..+.. .|...|.+++|..+|.|||||.. + ++.+.|-|.+..
T Consensus 479 ~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~-~---~~~~~VliHQLS 554 (733)
T KOG0650|consen 479 VGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMP-D---SGNKSVLIHQLS 554 (733)
T ss_pred hcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEecc-C---CCcceEEEEecc
Confidence 01111110 111111 00111 36678899999999999996543 3 456889999986
Q ss_pred CCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec-cCCCCcEEEEEEccCCCeeEE
Q 000736 211 SGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN-EQIDSTVELLKWNCMSDLLAA 289 (1323)
Q Consensus 211 ~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~-~~~~~~V~~laWSpDg~~LA~ 289 (1323)
.+..+.-+....|.+..+.|+|.-.++..++. +.|++|+.- .++.+-. .++..+|.+++.+|.|.-|..
T Consensus 555 K~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-------~~vRiYdL~---kqelvKkL~tg~kwiS~msihp~GDnli~ 624 (733)
T KOG0650|consen 555 KRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-------RSVRIYDLS---KQELVKKLLTGSKWISSMSIHPNGDNLIL 624 (733)
T ss_pred cccccCchhhcCCceeEEEecCCCceEEEEec-------cceEEEehh---HHHHHHHHhcCCeeeeeeeecCCCCeEEE
Confidence 66666666667889999999999988776664 469999842 1211101 233457999999999999999
Q ss_pred EEccCCCCeEEEEEee-CCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCE
Q 000736 290 VVRFEEYDSVKICFFS-NNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSK 368 (1323)
Q Consensus 290 ~~~d~~~~~V~LW~~~-n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~ 368 (1323)
++.|+ .+..+|+. +.+-| +.+..|......|+||+.-|+ ++.++.||.+.++.-. + .+|. -++
T Consensus 625 gs~d~---k~~WfDldlsskPy--k~lr~H~~avr~Va~H~ryPL-fas~sdDgtv~Vfhg~--V-Y~Dl-------~qn 688 (733)
T KOG0650|consen 625 GSYDK---KMCWFDLDLSSKPY--KTLRLHEKAVRSVAFHKRYPL-FASGSDDGTVIVFHGM--V-YNDL-------LQN 688 (733)
T ss_pred ecCCC---eeEEEEcccCcchh--HHhhhhhhhhhhhhhccccce-eeeecCCCcEEEEeee--e-ehhh-------hcC
Confidence 99998 67777765 21122 355566555688999998776 6777777877542111 0 0010 001
Q ss_pred EEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEE
Q 000736 369 ILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1323)
Q Consensus 369 l~lt~l~~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~ 421 (1323)
-++-|++. +..+...-+-.|.++.|+|.- -.|.+++.||+|+||.
T Consensus 689 pliVPlK~------L~gH~~~~~~gVLd~~wHP~q--pWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 689 PLIVPLKR------LRGHEKTNDLGVLDTIWHPRQ--PWLFSAGADGTIRLFT 733 (733)
T ss_pred CceEeeee------ccCceeecccceEeecccCCC--ceEEecCCCceEEeeC
Confidence 11222211 001111112348889999998 7999999999999993
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-14 Score=158.58 Aligned_cols=293 Identities=13% Similarity=0.089 Sum_probs=190.4
Q ss_pred eceecCcEEEEEEcCCCCeEEEEeCCccEEEEe-ecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEE
Q 000736 112 VGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFAT 190 (1323)
Q Consensus 112 vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAt 190 (1323)
+..|.+.|++++||.||+.||++++|++|++|+ ++|......++...- ..+.-+.+.|+||.+-++
T Consensus 82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv------------e~dhpT~V~FapDc~s~v- 148 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV------------EYDHPTRVVFAPDCKSVV- 148 (420)
T ss_pred hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc------------cCCCceEEEECCCcceEE-
Confidence 445789999999999999999999999999996 666543222222211 112347899999999887
Q ss_pred eeccccccCCCCEEEEEEC---CCCceeeeecc---------CCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000736 191 LSEFCNSSKLHKRLKVWER---DSGTLQASSEL---------KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1323)
Q Consensus 191 vss~d~~~~~d~~IrVWd~---~~G~l~~t~e~---------~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~n 258 (1323)
++-.. ..+++||-. ++|.....+-+ |.-.+-++..--.+.+|+|++.| .+|.+|+..
T Consensus 149 v~~~~-----g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~d------t~i~lw~lk 217 (420)
T KOG2096|consen 149 VSVKR-----GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLD------TKICLWDLK 217 (420)
T ss_pred EEEcc-----CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCC------CcEEEEecC
Confidence 65432 368888854 34544333322 33345667777888999999986 469999977
Q ss_pred CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee---CCee---EEEeEEEEecCCcEEEEEccCCC
Q 000736 259 GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS---NNHW---YLKYEIRYLRRDGIRFMWHPTKP 332 (1323)
Q Consensus 259 Gl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~---n~~w---ylkq~l~~~~~~~~~v~Wsp~~~ 332 (1323)
|...+..... ...-...+-||||+.||+++..- -|++|..- .+.. ..-.++..|+.....++|+|+..
T Consensus 218 Gq~L~~idtn---q~~n~~aavSP~GRFia~~gFTp---DVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~ 291 (420)
T KOG2096|consen 218 GQLLQSIDTN---QSSNYDAAVSPDGRFIAVSGFTP---DVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST 291 (420)
T ss_pred Cceeeeeccc---cccccceeeCCCCcEEEEecCCC---CceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc
Confidence 7665533211 22345678999999999998776 59999863 1110 00023344443447889999876
Q ss_pred cEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEE
Q 000736 333 LQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAIL 412 (1323)
Q Consensus 333 ~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s 412 (1323)
+ .+..+.||.+. +|+++. ..=+--|...++.. |.|.+.. .+....++.||+| +.||+.
T Consensus 292 r-~vtvSkDG~wr----iwdtdV---rY~~~qDpk~Lk~g-------~~pl~aa----g~~p~RL~lsP~g--~~lA~s- 349 (420)
T KOG2096|consen 292 R-AVTVSKDGKWR----IWDTDV---RYEAGQDPKILKEG-------SAPLHAA----GSEPVRLELSPSG--DSLAVS- 349 (420)
T ss_pred e-eEEEecCCcEE----Eeeccc---eEecCCCchHhhcC-------Ccchhhc----CCCceEEEeCCCC--cEEEee-
Confidence 4 77778899875 566651 00011133333221 2344421 2233489999999 888876
Q ss_pred CCCcEEEEECCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEec
Q 000736 413 SDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHH 467 (1323)
Q Consensus 413 ~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~ 467 (1323)
...+++++...++....+++ +.+...+.+|+|+++|+++|+.++
T Consensus 350 ~gs~l~~~~se~g~~~~~~e-----------~~h~~~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 350 FGSDLKVFASEDGKDYPELE-----------DIHSTTISSISYSSDGKYIATCGD 393 (420)
T ss_pred cCCceEEEEcccCccchhHH-----------HhhcCceeeEEecCCCcEEeeecc
Confidence 45589999887643332221 234568999999999999998775
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.1e-15 Score=157.35 Aligned_cols=281 Identities=12% Similarity=0.103 Sum_probs=192.5
Q ss_pred CEEEEEEecC-CCEEEEE-------eCCCcEEEEeCC-CCeEEEece--ecCcEEEEEEcCCCC-eEEEEeCCccEEEEe
Q 000736 77 SITAFDYLME-KEALIVG-------TSSGLLLLHSVD-GNATEVVGR--VEGGVRFISPSPDGD-LLGVTTGFGQILVMT 144 (1323)
Q Consensus 77 ~V~~v~~spd-g~~La~a-------s~dG~I~lw~~~-~~~~e~vg~--~~~~I~~~awSPDG~-~LA~~s~d~tV~l~t 144 (1323)
.=.+++|||= -..||+| ..+|.+.|-++. .+.+..+-+ ..+++..++||+.-+ .++++++||++++|+
T Consensus 10 ~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d 89 (311)
T KOG0277|consen 10 HGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFD 89 (311)
T ss_pred ccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEec
Confidence 4467888882 2234443 257899999985 333332222 368899999999864 566779999999875
Q ss_pred ecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecC-CcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCC
Q 000736 145 HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD-GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF 223 (1323)
Q Consensus 145 ~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspD-G~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~ 223 (1323)
. +..+.+++ .|+.|...|.++.|++- ++.|. +||. |++||+|+..-++.+.|+.+|..
T Consensus 90 ~---~~~s~Pi~-----------~~kEH~~EV~Svdwn~~~r~~~l-tsSW------D~TiKLW~~~r~~Sv~Tf~gh~~ 148 (311)
T KOG0277|consen 90 L---TMPSKPIH-----------KFKEHKREVYSVDWNTVRRRIFL-TSSW------DGTIKLWDPNRPNSVQTFNGHNS 148 (311)
T ss_pred c---CCCCcchh-----------HHHhhhhheEEeccccccceeEE-eecc------CCceEeecCCCCcceEeecCCcc
Confidence 2 12222322 35678888999999985 45566 5554 58999999988999999999999
Q ss_pred ceeEEEEccC-CCeEEEEecCCCCCCCCeEEEEeCC--CeeEEEEEeccCCCCcEEEEEEcc-CCCeeEEEEccCCCCeE
Q 000736 224 MGAVLEWMPS-GANIAAVYDRKSENKCPSIVFYERN--GLERSSFDINEQIDSTVELLKWNC-MSDLLAAVVRFEEYDSV 299 (1323)
Q Consensus 224 ~v~slawsPd-G~lIAs~s~d~~~~~~~~V~~~e~n--Gl~~~~f~l~~~~~~~V~~laWSp-Dg~~LA~~~~d~~~~~V 299 (1323)
.|...+|||. ++++|++|.| ...+|||.. |... .++.| ...+.+..||. |-.+||+++.|. .|
T Consensus 149 ~Iy~a~~sp~~~nlfas~Sgd------~~l~lwdvr~~gk~~---~i~ah-~~Eil~cdw~ky~~~vl~Tg~vd~---~v 215 (311)
T KOG0277|consen 149 CIYQAAFSPHIPNLFASASGD------GTLRLWDVRSPGKFM---SIEAH-NSEILCCDWSKYNHNVLATGGVDN---LV 215 (311)
T ss_pred EEEEEecCCCCCCeEEEccCC------ceEEEEEecCCCcee---EEEec-cceeEeecccccCCcEEEecCCCc---eE
Confidence 9999999995 7899999986 469999932 3221 23333 35789999996 667899999998 99
Q ss_pred EEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCC
Q 000736 300 KICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLM 379 (1323)
Q Consensus 300 ~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~v 379 (1323)
+.||+.|++-- ..++..|.-....+.|||-....|+..+-| . ++++|++....
T Consensus 216 r~wDir~~r~p-l~eL~gh~~AVRkvk~Sph~~~lLaSasYD----m---------------------T~riw~~~~~d- 268 (311)
T KOG0277|consen 216 RGWDIRNLRTP-LFELNGHGLAVRKVKFSPHHASLLASASYD----M---------------------TVRIWDPERQD- 268 (311)
T ss_pred EEEehhhcccc-ceeecCCceEEEEEecCcchhhHhhhcccc----c---------------------eEEecccccch-
Confidence 99999986521 123433322236788888765544433311 1 23333332110
Q ss_pred CCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEEC
Q 000736 380 PPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDL 422 (1323)
Q Consensus 380 Pppm~~~~l-~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~ 422 (1323)
-+..+. .|.+-|..+.||+-. ...+|+.+.|+.+.+|+.
T Consensus 269 ---s~~e~~~~HtEFv~g~Dws~~~-~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 269 ---SAIETVDHHTEFVCGLDWSLFD-PGQVASTGWDELLYVWNP 308 (311)
T ss_pred ---hhhhhhhccceEEecccccccc-Cceeeecccccceeeecc
Confidence 011122 367889999999874 378999999999999985
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-14 Score=162.77 Aligned_cols=250 Identities=14% Similarity=0.125 Sum_probs=183.2
Q ss_pred eeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEE
Q 000736 23 LQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLH 102 (1323)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw 102 (1323)
+.++.+-+..+.+.++..|...+.+|- .++.. ..+ +.+|. -.|+++.|+|+...+++++.|-.|++|
T Consensus 222 i~ald~~~s~~~ilTGG~d~~av~~d~--~s~q~---l~~----~~Gh~----kki~~v~~~~~~~~v~~aSad~~i~vw 288 (506)
T KOG0289|consen 222 ITALDIIPSSSKILTGGEDKTAVLFDK--PSNQI---LAT----LKGHT----KKITSVKFHKDLDTVITASADEIIRVW 288 (506)
T ss_pred eeEEeecCCCCcceecCCCCceEEEec--chhhh---hhh----ccCcc----eEEEEEEeccchhheeecCCcceEEee
Confidence 344444444588888888877888887 34432 222 45553 489999999999999999999999999
Q ss_pred eCCCCeE-EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe-ecCceeeeeeecccCCCceeccCccccCCCCeEEEE
Q 000736 103 SVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1323)
Q Consensus 103 ~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~is 180 (1323)
+...... ...-.|+..|+.+.-.|.|++|.+++.|++.-+-+ +++..+... .+. ..+-.+.+..
T Consensus 289 s~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~v---s~~-----------~s~v~~ts~~ 354 (506)
T KOG0289|consen 289 SVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVV---SDE-----------TSDVEYTSAA 354 (506)
T ss_pred ccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEE---eec-----------cccceeEEee
Confidence 9865433 34556799999999999999999999999986643 222222211 111 1123578999
Q ss_pred EecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCe
Q 000736 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL 260 (1323)
Q Consensus 181 WspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl 260 (1323)
|.|||-.|+ .++ .|+.+||||..++.-...+.+|.+.|.+|+|+-+|-++|++.+|. .|++||..-+
T Consensus 355 fHpDgLifg-tgt------~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~------~V~lwDLRKl 421 (506)
T KOG0289|consen 355 FHPDGLIFG-TGT------PDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDG------SVKLWDLRKL 421 (506)
T ss_pred EcCCceEEe-ccC------CCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCC------eEEEEEehhh
Confidence 999999999 664 468999999988888888999999999999999999999999863 4999995322
Q ss_pred e-EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEE
Q 000736 261 E-RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRY 317 (1323)
Q Consensus 261 ~-~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~ 317 (1323)
+ ...|.+. ....|.++.|.+.|++|++++.+- +|.++.-....|....++..
T Consensus 422 ~n~kt~~l~--~~~~v~s~~fD~SGt~L~~~g~~l---~Vy~~~k~~k~W~~~~~~~~ 474 (506)
T KOG0289|consen 422 KNFKTIQLD--EKKEVNSLSFDQSGTYLGIAGSDL---QVYICKKKTKSWTEIKELAD 474 (506)
T ss_pred cccceeecc--ccccceeEEEcCCCCeEEeeccee---EEEEEecccccceeeehhhh
Confidence 2 1223332 223599999999999999997765 55555555666765444433
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-14 Score=166.42 Aligned_cols=231 Identities=14% Similarity=0.121 Sum_probs=168.2
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeE-EEeceecCcEEEEEEcCCCCe-EEEEeCCccEEEEeecCceeee
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDL-LGVTTGFGQILVMTHDWDLLYE 152 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDG~~-LA~~s~d~tV~l~t~~~d~~~e 152 (1323)
.+.|.++.|-.||+.||.|.+.|.|+++|..+..+ ...-.|+..|..+.|+|++.+ |++|+.|+.+++|+.+-... .
T Consensus 68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~ 146 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-Q 146 (487)
T ss_pred ccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-E
Confidence 36799999999999999999999999999666332 345567999999999998765 55556666777765432211 1
Q ss_pred eeecccCCCceeccCccccCCCCeEEEEEecCCc-EEEEeeccccccCCCCEEEEEECCCC-ceeeeeccCCCceeEEEE
Q 000736 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGK-YFATLSEFCNSSKLHKRLKVWERDSG-TLQASSELKAFMGAVLEW 230 (1323)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~-~lAtvss~d~~~~~d~~IrVWd~~~G-~l~~t~e~~~~~v~slaw 230 (1323)
.. ..+|.|.|.+.+|+|-.. .++ +|++ |++||+||...- ..+..+ .|..+|.++.+
T Consensus 147 ~~--------------l~~htDYVR~g~~~~~~~hivv-tGsY------Dg~vrl~DtR~~~~~v~el-nhg~pVe~vl~ 204 (487)
T KOG0310|consen 147 AE--------------LSGHTDYVRCGDISPANDHIVV-TGSY------DGKVRLWDTRSLTSRVVEL-NHGCPVESVLA 204 (487)
T ss_pred EE--------------ecCCcceeEeeccccCCCeEEE-ecCC------CceEEEEEeccCCceeEEe-cCCCceeeEEE
Confidence 11 126778999999999866 555 6655 589999997544 333333 37788999999
Q ss_pred ccCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCee
Q 000736 231 MPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1323)
Q Consensus 231 sPdG~lIAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~w 309 (1323)
=|+|.+||+++. +.|++||.. |.+. ......+.-.|++|.++.||+.|.+++-|+ .|++++++||+
T Consensus 205 lpsgs~iasAgG-------n~vkVWDl~~G~ql--l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~---~VKVfd~t~~K- 271 (487)
T KOG0310|consen 205 LPSGSLIASAGG-------NSVKVWDLTTGGQL--LTSMFNHNKTVTCLRLASDSTRLLSGSLDR---HVKVFDTTNYK- 271 (487)
T ss_pred cCCCCEEEEcCC-------CeEEEEEecCCcee--hhhhhcccceEEEEEeecCCceEeeccccc---ceEEEEccceE-
Confidence 999999999985 579999965 4221 111122345799999999999999999999 89999999865
Q ss_pred EEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcE
Q 000736 310 YLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQI 344 (1323)
Q Consensus 310 ylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~ 344 (1323)
..+.+.|+ ....++.-+|++. +++++-.+|-+
T Consensus 272 -vv~s~~~~-~pvLsiavs~dd~-t~viGmsnGlv 303 (487)
T KOG0310|consen 272 -VVHSWKYP-GPVLSIAVSPDDQ-TVVIGMSNGLV 303 (487)
T ss_pred -EEEeeecc-cceeeEEecCCCc-eEEEeccccee
Confidence 45666663 1227777777654 36666555533
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.6e-14 Score=166.97 Aligned_cols=327 Identities=16% Similarity=0.151 Sum_probs=212.5
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEec------------CCCE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM------------EKEA 89 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~sp------------dg~~ 89 (1323)
-+.++.||+.++.|-++-.|+.||.||+-...+-+ +.. + +--| ...|++|.-.| .+ .
T Consensus 326 D~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvg--k~~---s-~lyH----S~ciW~Ve~~p~nv~~~~~aclp~~-c 394 (1080)
T KOG1408|consen 326 DAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVG--KCS---S-MLYH----SACIWDVENLPCNVHSPTAACLPRG-C 394 (1080)
T ss_pred ceeEEEecCCCceEEEEEcCceEEEEecccccccc--cee---e-eeec----cceeeeeccccccccCcccccCCcc-c
Confidence 46788899999999999999999999995211111 111 0 1111 34555555444 33 4
Q ss_pred EEEEeCCCcEEEEeCCCC---eE-----------EE--------------ece----------ecCcEEEEEEcCCCCeE
Q 000736 90 LIVGTSSGLLLLHSVDGN---AT-----------EV--------------VGR----------VEGGVRFISPSPDGDLL 131 (1323)
Q Consensus 90 La~as~dG~I~lw~~~~~---~~-----------e~--------------vg~----------~~~~I~~~awSPDG~~L 131 (1323)
+.+.|+||||+||+++.+ .+ .+ .|. -..||+|++.||||+.|
T Consensus 395 F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhL 474 (1080)
T KOG1408|consen 395 FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHL 474 (1080)
T ss_pred eeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCccee
Confidence 678899999999998651 11 00 000 13579999999999999
Q ss_pred EEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecC---CcEEEEeeccccccCCCCEEEEEE
Q 000736 132 GVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD---GKYFATLSEFCNSSKLHKRLKVWE 208 (1323)
Q Consensus 132 A~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspD---G~~lAtvss~d~~~~~d~~IrVWd 208 (1323)
|+|..-|++.+.+.. .+.... ..-+|+..|.++.+|-- .++|| +++ .||.|.|+|
T Consensus 475 AsGDr~GnlrVy~Lq--~l~~~~-------------~~eAHesEilcLeyS~p~~~~kLLA-Sas------rdRlIHV~D 532 (1080)
T KOG1408|consen 475 ASGDRGGNLRVYDLQ--ELEYTC-------------FMEAHESEILCLEYSFPVLTNKLLA-SAS------RDRLIHVYD 532 (1080)
T ss_pred cccCccCceEEEEeh--hhhhhh-------------heecccceeEEEeecCchhhhHhhh-hcc------CCceEEEEe
Confidence 999999999875321 011110 01157778899998842 35788 553 469999999
Q ss_pred CC-CCceeeeeccCCCceeEEEEccCC--CeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccC---CCCcEEEEEEcc
Q 000736 209 RD-SGTLQASSELKAFMGAVLEWMPSG--ANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQ---IDSTVELLKWNC 282 (1323)
Q Consensus 209 ~~-~G~l~~t~e~~~~~v~slawsPdG--~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~---~~~~V~~laWSp 282 (1323)
.. +=.++.++.+|...|++|-|--+| ....+++.|+. ...+.+.+.|.- ..|. +.+ ....+++++--|
T Consensus 533 v~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADks----imFr~~qk~~~g-~~f~-r~t~t~~ktTlYDm~Vdp 606 (1080)
T KOG1408|consen 533 VKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKS----IMFRVNQKASSG-RLFP-RHTQTLSKTTLYDMAVDP 606 (1080)
T ss_pred cccccchhhhhcccccceeEEEEeecCCceEEEeccCchh----hheehhccccCc-eecc-ccccccccceEEEeeeCC
Confidence 73 334677888899999999999988 45556665542 111112222110 0111 111 124689999999
Q ss_pred CCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecC-Cc--EEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCe
Q 000736 283 MSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRR-DG--IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENS 359 (1323)
Q Consensus 283 Dg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~-~~--~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~ 359 (1323)
..+++++++.|+ .|+|+++.+.+ +++.+..+++ ++ ..+.-+|.+-+ |+..+.|.++
T Consensus 607 ~~k~v~t~cQDr---nirif~i~sgK--q~k~FKgs~~~eG~lIKv~lDPSgiY-~atScsdktl--------------- 665 (1080)
T KOG1408|consen 607 TSKLVVTVCQDR---NIRIFDIESGK--QVKSFKGSRDHEGDLIKVILDPSGIY-LATSCSDKTL--------------- 665 (1080)
T ss_pred CcceEEEEeccc---ceEEEeccccc--eeeeecccccCCCceEEEEECCCccE-EEEeecCCce---------------
Confidence 999999999999 89999999874 3344444332 23 55666666543 3443334333
Q ss_pred eEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCC
Q 000736 360 TALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1323)
Q Consensus 360 ~v~viDg~~l~lt~l~~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~ 424 (1323)
.+.+|...-.-..| ..|...|+.|-|++|- ++|.+++.||.|.+|+++.
T Consensus 666 ----------~~~Df~sgEcvA~m----~GHsE~VTG~kF~nDC--kHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 666 ----------CFVDFVSGECVAQM----TGHSEAVTGVKFLNDC--KHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ----------EEEEeccchhhhhh----cCcchheeeeeecccc--hhheeecCCceEEEEECch
Confidence 33333221111112 3688999999999999 9999999999999999975
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-14 Score=157.28 Aligned_cols=252 Identities=11% Similarity=0.080 Sum_probs=180.7
Q ss_pred ccccccc-ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEE
Q 000736 15 ELQSKDE-ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIV 92 (1323)
Q Consensus 15 ~~~~~~~-~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~ 92 (1323)
++..|++ .+.+++|.+..+.+.++++ |+.+..|++. .++... +.....+ .+.|.++.|+-||..+.+
T Consensus 21 ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq-~~g~~~------~ka~~~~----~~PvL~v~WsddgskVf~ 89 (347)
T KOG0647|consen 21 EVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQ-NSGQLV------PKAQQSH----DGPVLDVCWSDDGSKVFS 89 (347)
T ss_pred ecCCCcccchheeEeccccCceEEecccCCceEEEEEe-cCCccc------chhhhcc----CCCeEEEEEccCCceEEe
Confidence 4444444 9999999998888887766 9999999993 112211 1112222 578999999999999999
Q ss_pred EeCCCcEEEEeCCCCeEEEeceecCcEEEEEEcCCCC--eEEEEeCCccEEEEe-ecCceeeeeeecccC---C------
Q 000736 93 GTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGD--LLGVTTGFGQILVMT-HDWDLLYENPLEELA---E------ 160 (1323)
Q Consensus 93 as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~--~LA~~s~d~tV~l~t-~~~d~~~e~~l~~~~---~------ 160 (1323)
|+.||.+++||+.+++...+|.|+++|.++.|=+-.. .|++||.|+||+.|+ |.-.++..+.+..-- +
T Consensus 90 g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~ 169 (347)
T KOG0647|consen 90 GGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMA 169 (347)
T ss_pred eccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCcee
Confidence 9999999999999999999999999999999977765 899999999999985 555555555443221 0
Q ss_pred -----Ccee---c----cCccccC----CCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCC--------ceee
Q 000736 161 -----GFDV---H----EPELSSS----FSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG--------TLQA 216 (1323)
Q Consensus 161 -----~~~V---s----~tqf~~~----~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G--------~l~~ 216 (1323)
.++| + .++|+.+ .-.+.+|+-..|++-+| +++.+ |++-|-..+.+ ++++
T Consensus 170 vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~a-lGsiE------Grv~iq~id~~~~~~nFtFkCHR 242 (347)
T KOG0647|consen 170 VVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFA-LGSIE------GRVAIQYIDDPNPKDNFTFKCHR 242 (347)
T ss_pred EEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceE-eeeec------ceEEEEecCCCCccCceeEEEec
Confidence 1111 0 3444422 23568899999998888 88764 56777766555 2333
Q ss_pred eeccCC---CceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEc
Q 000736 217 SSELKA---FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVR 292 (1323)
Q Consensus 217 t~e~~~---~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~ 292 (1323)
...+.. +.|++|+|.|.-..||+++.| ++..|||++- ++.-++- ..+...|..-+||.+|.++|.+..
T Consensus 243 ~~~~~~~~VYaVNsi~FhP~hgtlvTaGsD------Gtf~FWDkda-r~kLk~s-~~~~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 243 STNSVNDDVYAVNSIAFHPVHGTLVTAGSD------GTFSFWDKDA-RTKLKTS-ETHPQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred cCCCCCCceEEecceEeecccceEEEecCC------ceEEEecchh-hhhhhcc-CcCCCccceeEecCCCCEEEEEee
Confidence 222222 347899999999999999886 4699999863 2221111 223567999999999999999864
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-13 Score=150.98 Aligned_cols=281 Identities=14% Similarity=0.156 Sum_probs=196.2
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe-EEEeceecCcEEEEEEcCCCCeEEEEeC--CccEEEEeecCceee
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-TEVVGRVEGGVRFISPSPDGDLLGVTTG--FGQILVMTHDWDLLY 151 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~-~e~vg~~~~~I~~~awSPDG~~LA~~s~--d~tV~l~t~~~d~~~ 151 (1323)
++.|.+|.|+++|+.|++.++|-++.|||...++ ..++....-||..++|-.....+..+|. |.+|+..+-
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl------ 87 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL------ 87 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe------
Confidence 6799999999999999999999999999987654 4577766789999999877777777765 777766432
Q ss_pred eeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEc
Q 000736 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM 231 (1323)
Q Consensus 152 e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slaws 231 (1323)
++ .+.| .-|.||.+.|.+|+-+|-+..|. +++. |++||+||.+.-+++-.... .+ -...||.
T Consensus 88 ----~d---Nkyl--RYF~GH~~~V~sL~~sP~~d~Fl-S~S~------D~tvrLWDlR~~~cqg~l~~-~~-~pi~AfD 149 (311)
T KOG1446|consen 88 ----HD---NKYL--RYFPGHKKRVNSLSVSPKDDTFL-SSSL------DKTVRLWDLRVKKCQGLLNL-SG-RPIAAFD 149 (311)
T ss_pred ----ec---CceE--EEcCCCCceEEEEEecCCCCeEE-eccc------CCeEEeeEecCCCCceEEec-CC-CcceeEC
Confidence 11 1122 24668999999999999999998 6654 58999999865554443221 11 2568999
Q ss_pred cCCCeEEEEecCCCCCCCCeEEEEeCCCe---eEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCe
Q 000736 232 PSGANIAAVYDRKSENKCPSIVFYERNGL---ERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1323)
Q Consensus 232 PdG~lIAs~s~d~~~~~~~~V~~~e~nGl---~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~ 308 (1323)
|+|-++|.+... ..|++||.--- --..|.+..+.......|.|||||+.|......+ .+.+.|.=.+
T Consensus 150 p~GLifA~~~~~------~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s---~~~~lDAf~G- 219 (311)
T KOG1446|consen 150 PEGLIFALANGS------ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS---FIYLLDAFDG- 219 (311)
T ss_pred CCCcEEEEecCC------CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC---cEEEEEccCC-
Confidence 999999988752 37999984211 1123444433356788999999999999988777 6777775333
Q ss_pred eEEEeEEEEecCCc---EEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCcee
Q 000736 309 WYLKYEIRYLRRDG---IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYL 385 (1323)
Q Consensus 309 wylkq~l~~~~~~~---~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~ 385 (1323)
.+++.+...+... ....|.||+.. +..+..||.+. +|... .|..+..|. + |
T Consensus 220 -~~~~tfs~~~~~~~~~~~a~ftPds~F-vl~gs~dg~i~----vw~~~----------tg~~v~~~~--~----~---- 273 (311)
T KOG1446|consen 220 -TVKSTFSGYPNAGNLPLSATFTPDSKF-VLSGSDDGTIH----VWNLE----------TGKKVAVLR--G----P---- 273 (311)
T ss_pred -cEeeeEeeccCCCCcceeEEECCCCcE-EEEecCCCcEE----EEEcC----------CCcEeeEec--C----C----
Confidence 3677777766443 67889999875 55556678775 45442 333333221 0 0
Q ss_pred eeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECC
Q 000736 386 FSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1323)
Q Consensus 386 ~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~ 423 (1323)
+..++.++-|+|-- .++|++ +..+.+|-.+
T Consensus 274 ----~~~~~~~~~fnP~~--~mf~sa--~s~l~fw~p~ 303 (311)
T KOG1446|consen 274 ----NGGPVSCVRFNPRY--AMFVSA--SSNLVFWLPD 303 (311)
T ss_pred ----CCCCccccccCCce--eeeeec--CceEEEEecc
Confidence 23456677799986 556555 4578888664
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.4e-14 Score=153.64 Aligned_cols=281 Identities=17% Similarity=0.130 Sum_probs=180.6
Q ss_pred CCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCC-CeEE--EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecC
Q 000736 72 LEPGDSITAFDYLM-EKEALIVGTSSGLLLLHSVDG-NATE--VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDW 147 (1323)
Q Consensus 72 ~~~~~~V~~v~~sp-dg~~La~as~dG~I~lw~~~~-~~~e--~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~ 147 (1323)
-.|.|.|.+++||| ....+|.+|-||+|++|+++. +... ..-.|++.|.+++||-||..+++++.|+++++|+
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wD--- 100 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWD--- 100 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEE---
Confidence 34578999999999 556777899999999999975 3432 3445789999999999999999999999998864
Q ss_pred ceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCc--EEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCce
Q 000736 148 DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGK--YFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMG 225 (1323)
Q Consensus 148 d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~--~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v 225 (1323)
..+.+. .|+..|+..+.++.|=+-.. .|+ .+|+ |++||.||.+......+.+- +..+
T Consensus 101 -L~S~Q~------------~~v~~Hd~pvkt~~wv~~~~~~cl~-TGSW------DKTlKfWD~R~~~pv~t~~L-PeRv 159 (347)
T KOG0647|consen 101 -LASGQV------------SQVAAHDAPVKTCHWVPGMNYQCLV-TGSW------DKTLKFWDTRSSNPVATLQL-PERV 159 (347)
T ss_pred -ccCCCe------------eeeeecccceeEEEEecCCCcceeE-eccc------ccceeecccCCCCeeeeeec-ccee
Confidence 333321 13336778899999988765 788 6655 58999999877777776542 2223
Q ss_pred eEEEEccCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEec-cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEE
Q 000736 226 AVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDIN-EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICF 303 (1323)
Q Consensus 226 ~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~-~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~ 303 (1323)
.+..- --.+++.+..+ ..|.+|+. |+.. +|... .+..-.+.+|+--.|.+..|.|+-.| .|-+-.
T Consensus 160 Ya~Dv--~~pm~vVata~------r~i~vynL~n~~t--e~k~~~SpLk~Q~R~va~f~d~~~~alGsiEG---rv~iq~ 226 (347)
T KOG0647|consen 160 YAADV--LYPMAVVATAE------RHIAVYNLENPPT--EFKRIESPLKWQTRCVACFQDKDGFALGSIEG---RVAIQY 226 (347)
T ss_pred eehhc--cCceeEEEecC------CcEEEEEcCCCcc--hhhhhcCcccceeeEEEEEecCCceEeeeecc---eEEEEe
Confidence 32221 12234444443 34778885 5422 22211 22223477888888888888887766 444433
Q ss_pred eeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCc
Q 000736 304 FSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPM 383 (1323)
Q Consensus 304 ~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm 383 (1323)
++...- +..+ ++.+--..+ . +++ .|
T Consensus 227 id~~~~--~~nF------------------tFkCHR~~~-----------------~---~~~-~V-------------- 251 (347)
T KOG0647|consen 227 IDDPNP--KDNF------------------TFKCHRSTN-----------------S---VND-DV-------------- 251 (347)
T ss_pred cCCCCc--cCce------------------eEEEeccCC-----------------C---CCC-ce--------------
Confidence 322100 0000 011100000 0 011 00
Q ss_pred eeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEE
Q 000736 384 YLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLS 463 (1323)
Q Consensus 384 ~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla 463 (1323)
=.|++|+|+|.. ..|+++++||++.+||-+....+.+. +.+...|..-+|..+|.++|
T Consensus 252 --------YaVNsi~FhP~h--gtlvTaGsDGtf~FWDkdar~kLk~s------------~~~~qpItcc~fn~~G~ifa 309 (347)
T KOG0647|consen 252 --------YAVNSIAFHPVH--GTLVTAGSDGTFSFWDKDARTKLKTS------------ETHPQPITCCSFNRNGSIFA 309 (347)
T ss_pred --------EEecceEeeccc--ceEEEecCCceEEEecchhhhhhhcc------------CcCCCccceeEecCCCCEEE
Confidence 158999999988 89999999999999998764433111 11233567778899999887
Q ss_pred EEe
Q 000736 464 VSH 466 (1323)
Q Consensus 464 ~~~ 466 (1323)
.+.
T Consensus 310 YA~ 312 (347)
T KOG0647|consen 310 YAL 312 (347)
T ss_pred EEe
Confidence 653
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.4e-15 Score=178.83 Aligned_cols=196 Identities=15% Similarity=0.139 Sum_probs=149.0
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC------------------------------------C-----------
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDG------------------------------------N----------- 107 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~------------------------------------~----------- 107 (1323)
.+.|+++.||+||++||+|+.||-|+||.+.. .
T Consensus 267 ~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~ 346 (712)
T KOG0283|consen 267 KGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSP 346 (712)
T ss_pred CCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCc
Confidence 58999999999999999999999999997633 0
Q ss_pred ---------------eEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccC
Q 000736 108 ---------------ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSS 172 (1323)
Q Consensus 108 ---------------~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~ 172 (1323)
.++..| |.+-|..++||-+ ++|.++|-|+||+|| .+-...+|... .|
T Consensus 347 ~~~~p~~~f~f~ekP~~ef~G-Ht~DILDlSWSKn-~fLLSSSMDKTVRLW----h~~~~~CL~~F------------~H 408 (712)
T KOG0283|consen 347 CVLLPLKAFVFSEKPFCEFKG-HTADILDLSWSKN-NFLLSSSMDKTVRLW----HPGRKECLKVF------------SH 408 (712)
T ss_pred cccCCCccccccccchhhhhc-cchhheecccccC-CeeEeccccccEEee----cCCCcceeeEE------------ec
Confidence 001234 5788999999977 689999999999876 44455566544 36
Q ss_pred CCCeEEEEEec-CCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCe
Q 000736 173 FSFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPS 251 (1323)
Q Consensus 173 ~~~i~~isWsp-DG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~ 251 (1323)
.+.|++|+|.| |-+||+ +|+.| +++|||+. ....+.-..-...+|++++|+|||+....|+.+ +.
T Consensus 409 ndfVTcVaFnPvDDryFi-SGSLD------~KvRiWsI-~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~------G~ 474 (712)
T KOG0283|consen 409 NDFVTCVAFNPVDDRYFI-SGSLD------GKVRLWSI-SDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFN------GY 474 (712)
T ss_pred CCeeEEEEecccCCCcEe-ecccc------cceEEeec-CcCeeEeehhhhhhheeEEeccCCceEEEEEec------cE
Confidence 67889999999 678999 78764 89999999 444444433456889999999999999999985 56
Q ss_pred EEEEeCCCeeEE-EEEeccC-----CCCcEEEEEEccCC-CeeEEEEccCCCCeEEEEEee
Q 000736 252 IVFYERNGLERS-SFDINEQ-----IDSTVELLKWNCMS-DLLAAVVRFEEYDSVKICFFS 305 (1323)
Q Consensus 252 V~~~e~nGl~~~-~f~l~~~-----~~~~V~~laWSpDg-~~LA~~~~d~~~~~V~LW~~~ 305 (1323)
.+||+..|++.. .+.+..+ ....|+.+.|.|-. +.+.+.+.|. .|||+|..
T Consensus 475 C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDS---rIRI~d~~ 532 (712)
T KOG0283|consen 475 CRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDS---RIRIYDGR 532 (712)
T ss_pred EEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCC---ceEEEecc
Confidence 999998887643 3444321 12369999998643 3455566666 69999984
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.8e-15 Score=172.78 Aligned_cols=251 Identities=13% Similarity=0.065 Sum_probs=187.0
Q ss_pred eeecCCCE-EEEEeCCCcEEEEecccccccccce-eeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeC
Q 000736 27 ALDIEQNR-LFFASSANNIYSAQLSSFQNERASI-KTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSV 104 (1323)
Q Consensus 27 ~~d~~~~~-l~~~s~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~ 104 (1323)
-.|+-++. ||+++-|+.|+.|+.+...++.... +. .+..| .+.|.++...-+|+.|+++|.|-+|++|+.
T Consensus 31 q~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~a----sme~H----sDWVNDiiL~~~~~tlIS~SsDtTVK~W~~ 102 (735)
T KOG0308|consen 31 QLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIA----SMEHH----SDWVNDIILCGNGKTLISASSDTTVKVWNA 102 (735)
T ss_pred cccCCCCceEEecCCCceEEEeccccccCCcccchhh----hhhhh----HhHHhhHHhhcCCCceEEecCCceEEEeec
Confidence 35655565 8999999999999984211110000 11 13333 578999999999999999999999999998
Q ss_pred CCC---eEEEeceecCcEEEEEE-cCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEE
Q 000736 105 DGN---ATEVVGRVEGGVRFISP-SPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1323)
Q Consensus 105 ~~~---~~e~vg~~~~~I~~~aw-SPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~is 180 (1323)
..+ -+.++|.|++.|.|++. -++.+++|+|+-|+.|.+|+-. ...+...+... ...+++ .-.++.+++.+++
T Consensus 103 ~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin--~~~~~l~~s~n-~~t~~s-l~sG~k~siYSLA 178 (735)
T KOG0308|consen 103 HKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDIN--TGTATLVASFN-NVTVNS-LGSGPKDSIYSLA 178 (735)
T ss_pred ccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEcc--Ccchhhhhhcc-cccccc-CCCCCccceeeee
Confidence 653 23588999999999999 9999999999999999998643 11111111111 001100 0015667899999
Q ss_pred EecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCe
Q 000736 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL 260 (1323)
Q Consensus 181 WspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl 260 (1323)
=.+.|..|+ .|+ -.+.+|+||..+++-+-.+.+|..-|..|--++||+.+.|++.|+ +|++|+.+ .
T Consensus 179 ~N~t~t~iv-sGg------tek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDg------tIrlWdLg-q 244 (735)
T KOG0308|consen 179 MNQTGTIIV-SGG------TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDG------TIRLWDLG-Q 244 (735)
T ss_pred cCCcceEEE-ecC------cccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCc------eEEeeecc-c
Confidence 999997777 543 247899999999998888999999999999999999999999974 69999984 4
Q ss_pred eEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCC
Q 000736 261 ERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1323)
Q Consensus 261 ~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~ 307 (1323)
++..+++..|. ..|+++.-||+=+.+-+|+.|+ .|..=++.|+
T Consensus 245 QrCl~T~~vH~-e~VWaL~~~~sf~~vYsG~rd~---~i~~Tdl~n~ 287 (735)
T KOG0308|consen 245 QRCLATYIVHK-EGVWALQSSPSFTHVYSGGRDG---NIYRTDLRNP 287 (735)
T ss_pred cceeeeEEecc-CceEEEeeCCCcceEEecCCCC---cEEecccCCc
Confidence 45555555443 4599999999999999999998 6777777774
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.9e-13 Score=157.25 Aligned_cols=158 Identities=18% Similarity=0.323 Sum_probs=144.8
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHhcchHHHHhhc--CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhcCCHHHHHH
Q 000736 947 FENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI--TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMK 1024 (1323)
Q Consensus 947 ye~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~--~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~ 1024 (1323)
|++|-..|-+..+ |++|++++++- ..|-+|++|. .-|+++-.+-++||+||+..++++.|..+|..|++..||++
T Consensus 664 ydkagdlfeki~d--~dkale~fkkg-daf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaie 740 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHD--FDKALECFKKG-DAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIE 740 (1636)
T ss_pred HHhhhhHHHHhhC--HHHHHHHHHcc-cHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHH
Confidence 9999999999965 99999999999 9999999999 89999999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcC
Q 000736 1025 AYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHR 1104 (1323)
Q Consensus 1025 ~y~~ag~W~~al~lA~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~e~Av~~~i~~~~w~eA~rla~~~~ 1104 (1323)
+.+.+..|..|+.+...+. +..-....+-++|++..+.|+|+-|+++|.+ ++....||.||-+++.|++|++|+....
T Consensus 741 aai~akew~kai~ildniq-dqk~~s~yy~~iadhyan~~dfe~ae~lf~e-~~~~~dai~my~k~~kw~da~kla~e~~ 818 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQ-DQKTASGYYGEIADHYANKGDFEIAEELFTE-ADLFKDAIDMYGKAGKWEDAFKLAEECH 818 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhh-hhccccccchHHHHHhccchhHHHHHHHHHh-cchhHHHHHHHhccccHHHHHHHHHHhc
Confidence 9999999999999988664 2222245677899999999999999999999 9999999999999999999999999966
Q ss_pred CchhH
Q 000736 1105 REDLI 1109 (1323)
Q Consensus 1105 ~~dLi 1109 (1323)
+|+-+
T Consensus 819 ~~e~t 823 (1636)
T KOG3616|consen 819 GPEAT 823 (1636)
T ss_pred CchhH
Confidence 66543
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.7e-14 Score=151.01 Aligned_cols=244 Identities=12% Similarity=0.084 Sum_probs=176.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1323)
+++.+-|+.|||.||+|+.|+..-.|-. .+++. +-+ ..+| .+.|++++..-+.+.|++|++|.+++|
T Consensus 12 plTqiKyN~eGDLlFscaKD~~~~vw~s--~nGer---lGt----y~GH----tGavW~~Did~~s~~liTGSAD~t~kL 78 (327)
T KOG0643|consen 12 PLTQIKYNREGDLLFSCAKDSTPTVWYS--LNGER---LGT----YDGH----TGAVWCCDIDWDSKHLITGSADQTAKL 78 (327)
T ss_pred ccceEEecCCCcEEEEecCCCCceEEEe--cCCce---eee----ecCC----CceEEEEEecCCcceeeeccccceeEE
Confidence 6788899999999999999998888876 45553 333 4555 578999999999999999999999999
Q ss_pred EeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCc-----cEEEEeecCceeeeeeecccCCCceeccCc---cccCC
Q 000736 102 HSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFG-----QILVMTHDWDLLYENPLEELAEGFDVHEPE---LSSSF 173 (1323)
Q Consensus 102 w~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~-----tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tq---f~~~~ 173 (1323)
||+.+++..-.-.....|+.+.||++|++++..+.+. .|-+.. +...+ ...+++.- ...++
T Consensus 79 WDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fd----------i~~~~-~~~~s~ep~~kI~t~~ 147 (327)
T KOG0643|consen 79 WDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFD----------IRDDS-SDIDSEEPYLKIPTPD 147 (327)
T ss_pred EEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEE----------ccCCh-hhhcccCceEEecCCc
Confidence 9999987642223467899999999999888776542 232221 11000 00111110 11345
Q ss_pred CCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeee-eccCCCceeEEEEccCCCeEEEEecCCCCCCCCeE
Q 000736 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS-SELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1323)
Q Consensus 174 ~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t-~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V 252 (1323)
+.+.+.-|+|-|++++ .+ ..++.|.+||..+|...-. -+-|...++.+.+|||+.+..+++.|.+ -
T Consensus 148 skit~a~Wg~l~~~ii-~G------he~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtt------a 214 (327)
T KOG0643|consen 148 SKITSALWGPLGETII-AG------HEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTT------A 214 (327)
T ss_pred cceeeeeecccCCEEE-Ee------cCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCcc------c
Confidence 7889999999999998 44 3578999999989865544 4668888999999999999999998754 3
Q ss_pred EEEeCCCe----------------------------------------eEEEEEec-------------cCCCCcEEEEE
Q 000736 253 VFYERNGL----------------------------------------ERSSFDIN-------------EQIDSTVELLK 279 (1323)
Q Consensus 253 ~~~e~nGl----------------------------------------~~~~f~l~-------------~~~~~~V~~la 279 (1323)
++||...+ +.+.|.-+ ..|-+.|++|+
T Consensus 215 kl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvA 294 (327)
T KOG0643|consen 215 KLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVA 294 (327)
T ss_pred eeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeE
Confidence 33332111 11112111 01236799999
Q ss_pred EccCCCeeEEEEccCCCCeEEEEEee
Q 000736 280 WNCMSDLLAAVVRFEEYDSVKICFFS 305 (1323)
Q Consensus 280 WSpDg~~LA~~~~d~~~~~V~LW~~~ 305 (1323)
|+|||+.-++|+.|+ .|+|-...
T Consensus 295 fhPdGksYsSGGEDG---~VR~h~Fd 317 (327)
T KOG0643|consen 295 FHPDGKSYSSGGEDG---YVRLHHFD 317 (327)
T ss_pred ECCCCcccccCCCCc---eEEEEEec
Confidence 999999999999999 99998765
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.1e-15 Score=178.50 Aligned_cols=217 Identities=13% Similarity=0.068 Sum_probs=135.8
Q ss_pred CCEEEEEEecCCCEEEEEeCC---CcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEe-CCccEEEEeecCceee
Q 000736 76 DSITAFDYLMEKEALIVGTSS---GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTT-GFGQILVMTHDWDLLY 151 (1323)
Q Consensus 76 ~~V~~v~~spdg~~La~as~d---G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s-~d~tV~l~t~~~d~~~ 151 (1323)
+.+.+..|||||+.|+.++.+ .+|.+||+.+++...+....+...+++|||||+.||+++ .+|.+.+|..+-+.-.
T Consensus 204 ~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~ 283 (429)
T PRK01742 204 QPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT 283 (429)
T ss_pred CccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC
Confidence 468999999999999988754 369999999876554444445566899999999999875 6787766632211000
Q ss_pred eeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEE--CCCCceeeeeccCCCceeEEE
Q 000736 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWE--RDSGTLQASSELKAFMGAVLE 229 (1323)
Q Consensus 152 e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd--~~~G~l~~t~e~~~~~v~sla 229 (1323)
...+. .+...+..++|+|||+.+++++. .++..+||+ ..++.. ... .+.+ .+++
T Consensus 284 ~~~lt--------------~~~~~~~~~~wSpDG~~i~f~s~------~~g~~~I~~~~~~~~~~-~~l-~~~~--~~~~ 339 (429)
T PRK01742 284 PSQLT--------------SGAGNNTEPSWSPDGQSILFTSD------RSGSPQVYRMSASGGGA-SLV-GGRG--YSAQ 339 (429)
T ss_pred eEeec--------------cCCCCcCCEEECCCCCEEEEEEC------CCCCceEEEEECCCCCe-EEe-cCCC--CCcc
Confidence 01111 12234578999999998884442 234556665 423332 222 2233 4578
Q ss_pred EccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCee
Q 000736 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1323)
Q Consensus 230 wsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~w 309 (1323)
|||||+.||.++.+ .+..|+..+..... +... ....+++|||||+.|+.++.++ .+.+|.+-+...
T Consensus 340 ~SpDG~~ia~~~~~-------~i~~~Dl~~g~~~~--lt~~--~~~~~~~~sPdG~~i~~~s~~g---~~~~l~~~~~~G 405 (429)
T PRK01742 340 ISADGKTLVMINGD-------NVVKQDLTSGSTEV--LSST--FLDESPSISPNGIMIIYSSTQG---LGKVLQLVSADG 405 (429)
T ss_pred CCCCCCEEEEEcCC-------CEEEEECCCCCeEE--ecCC--CCCCCceECCCCCEEEEEEcCC---CceEEEEEECCC
Confidence 99999999988753 36668854322221 2111 1235788999999999999877 566666532222
Q ss_pred EEEeEEEEecCCcEEEEEccC
Q 000736 310 YLKYEIRYLRRDGIRFMWHPT 330 (1323)
Q Consensus 310 ylkq~l~~~~~~~~~v~Wsp~ 330 (1323)
...+.+..+.......+|||-
T Consensus 406 ~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 406 RFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CceEEccCCCCCCCCcccCCC
Confidence 234455433323366788874
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.5e-15 Score=166.71 Aligned_cols=264 Identities=13% Similarity=0.063 Sum_probs=184.7
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1323)
.+....|=..+++++.+..|..|..|+.. .++. -.+.+ |.+- .+.|+++.|-+++..++.++.|+.+++
T Consensus 177 ev~~v~~l~~sdtlatgg~Dr~Ik~W~v~--~~k~-~~~~t----LaGs----~g~it~~d~d~~~~~~iAas~d~~~r~ 245 (459)
T KOG0288|consen 177 EVHDVEFLRNSDTLATGGSDRIIKLWNVL--GEKS-ELIST----LAGS----LGNITSIDFDSDNKHVIAASNDKNLRL 245 (459)
T ss_pred ccceeEEccCcchhhhcchhhhhhhhhcc--cchh-hhhhh----hhcc----CCCcceeeecCCCceEEeecCCCceee
Confidence 46666777888999999999889999983 3331 11333 2221 468999999999999999999999999
Q ss_pred EeCCCCeE-EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEE
Q 000736 102 HSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1323)
Q Consensus 102 w~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~is 180 (1323)
||++..+. ..+..|.+.|+++.|.-+...+++++.|.||++ ||.....+..+.- .+ ..+..|.
T Consensus 246 Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~----WDl~k~~C~kt~l----------~~--S~cnDI~ 309 (459)
T KOG0288|consen 246 WNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKL----WDLQKAYCSKTVL----------PG--SQCNDIV 309 (459)
T ss_pred eeccchhhhhhhcccccceeeehhhccccceeeccccchhhh----hhhhhhheecccc----------cc--ccccceE
Confidence 99998654 344447999999999988777999999999966 4544443333211 00 1112333
Q ss_pred EecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCe
Q 000736 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL 260 (1323)
Q Consensus 181 WspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl 260 (1323)
-+ +..++ ++ .-|++||.||..++.+..+-+ ..|.+.+|..+++|..|-++++|. ++.+++..+.
T Consensus 310 ~~--~~~~~-Sg------H~DkkvRfwD~Rs~~~~~sv~-~gg~vtSl~ls~~g~~lLsssRDd------tl~viDlRt~ 373 (459)
T KOG0288|consen 310 CS--ISDVI-SG------HFDKKVRFWDIRSADKTRSVP-LGGRVTSLDLSMDGLELLSSSRDD------TLKVIDLRTK 373 (459)
T ss_pred ec--ceeee-ec------ccccceEEEeccCCceeeEee-cCcceeeEeeccCCeEEeeecCCC------ceeeeecccc
Confidence 33 33444 33 346889999965777766544 556899999999999998888864 5778885443
Q ss_pred eE-EEEEeccC-CCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCC--cEEEEEccCCCc
Q 000736 261 ER-SSFDINEQ-IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRD--GIRFMWHPTKPL 333 (1323)
Q Consensus 261 ~~-~~f~l~~~-~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~--~~~v~Wsp~~~~ 333 (1323)
.. +.|.-..- -...+..+.|||||.++|.|+.|+ .|.||++.+.+.- ..+..+... .+++.|+|.|..
T Consensus 374 eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dg---sv~iW~v~tgKlE--~~l~~s~s~~aI~s~~W~~sG~~ 445 (459)
T KOG0288|consen 374 EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADG---SVYIWSVFTGKLE--KVLSLSTSNAAITSLSWNPSGSG 445 (459)
T ss_pred cEEEEeeccccccccccceeEECCCCceeeeccCCC---cEEEEEccCceEE--EEeccCCCCcceEEEEEcCCCch
Confidence 32 22332211 122478899999999999999999 9999999876532 222222223 388999998865
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.9e-15 Score=164.13 Aligned_cols=276 Identities=13% Similarity=0.100 Sum_probs=192.5
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1323)
.+.|+-|| .+.+.+++-|+.|..||.+ +.+- ..+ |.+| .+.|.+++|-- +.|++||+|.||++
T Consensus 199 gVYClQYD--D~kiVSGlrDnTikiWD~n--~~~c-~~~------L~GH----tGSVLCLqyd~--rviisGSSDsTvrv 261 (499)
T KOG0281|consen 199 GVYCLQYD--DEKIVSGLRDNTIKIWDKN--SLEC-LKI------LTGH----TGSVLCLQYDE--RVIVSGSSDSTVRV 261 (499)
T ss_pred ceEEEEec--chhhhcccccCceEEeccc--cHHH-HHh------hhcC----CCcEEeeeccc--eEEEecCCCceEEE
Confidence 56666665 5778899999999999994 2221 112 4455 57899999864 59999999999999
Q ss_pred EeCCCCeE-EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEE
Q 000736 102 HSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1323)
Q Consensus 102 w~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~is 180 (1323)
||.+++++ .+.-+|-..|..+.||. .+++++|.|.++.+|... .|......+. ..||-..|..+.
T Consensus 262 WDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~-sps~it~rrV-----------LvGHrAaVNvVd 327 (499)
T KOG0281|consen 262 WDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMA-SPTDITLRRV-----------LVGHRAAVNVVD 327 (499)
T ss_pred EeccCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEecc-CchHHHHHHH-----------Hhhhhhheeeec
Confidence 99999875 44445678899999994 489999999999998532 1111111111 115556667777
Q ss_pred EecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCC-C
Q 000736 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-G 259 (1323)
Q Consensus 181 WspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~n-G 259 (1323)
| |.+|++ ++ .+||+||+|+..++++..+..+|...+.++.+ .|++++||+.| ++|++||.. |
T Consensus 328 f--d~kyIV-sA------SgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSD------ntIRlwdi~~G 390 (499)
T KOG0281|consen 328 F--DDKYIV-SA------SGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSD------NTIRLWDIECG 390 (499)
T ss_pred c--ccceEE-Ee------cCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCC------ceEEEEecccc
Confidence 7 456888 44 35799999999999999999998877777665 68999999986 579999963 2
Q ss_pred eeEEEEEec--cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEE
Q 000736 260 LERSSFDIN--EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLIC 337 (1323)
Q Consensus 260 l~~~~f~l~--~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~ 337 (1323)
. .|+ ..++.-|..|.|+ .+.+++|..|+ +|++||+.... + +.. |.+..+|..
T Consensus 391 ~-----cLRvLeGHEeLvRciRFd--~krIVSGaYDG---kikvWdl~aal----d-----pra-------~~~~~Cl~~ 444 (499)
T KOG0281|consen 391 A-----CLRVLEGHEELVRCIRFD--NKRIVSGAYDG---KIKVWDLQAAL----D-----PRA-------PASTLCLRT 444 (499)
T ss_pred H-----HHHHHhchHHhhhheeec--Cceeeeccccc---eEEEEeccccc----C-----Ccc-------cccchHHHh
Confidence 2 222 2235678899984 57899999999 99999987521 0 000 111122211
Q ss_pred Ee-cCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCc
Q 000736 338 WT-LDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLS 377 (1323)
Q Consensus 338 ~~-~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~ 377 (1323)
.. ..|. +|...+++..+++....++|++|+|-..
T Consensus 445 lv~hsgR------VFrLQFD~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 445 LVEHSGR------VFRLQFDEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred hhhccce------eEEEeecceEEEeccCCCeEEEEEcCCC
Confidence 11 1232 3444455667888888899999999653
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-13 Score=145.43 Aligned_cols=265 Identities=8% Similarity=-0.006 Sum_probs=191.5
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1323)
.+.+.-|+.||+-...|..|..+.+|++ ..+.. +.+ ..+| |..|.+++-+.|...+|+++.|..|.+
T Consensus 19 aV~avryN~dGnY~ltcGsdrtvrLWNp--~rg~l---ikt----Ysgh----G~EVlD~~~s~Dnskf~s~GgDk~v~v 85 (307)
T KOG0316|consen 19 AVRAVRYNVDGNYCLTCGSDRTVRLWNP--LRGAL---IKT----YSGH----GHEVLDAALSSDNSKFASCGGDKAVQV 85 (307)
T ss_pred ceEEEEEccCCCEEEEcCCCceEEeecc--cccce---eee----ecCC----CceeeeccccccccccccCCCCceEEE
Confidence 7888899999999999999999999999 34332 222 3445 568999999999999999999999999
Q ss_pred EeCCCCeE-EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe---ecCceeeeeeecccCCCceeccCccccCCCCeE
Q 000736 102 HSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT---HDWDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1323)
Q Consensus 102 w~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t---~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~ 177 (1323)
||++|++. ..++.|.+.|++++|+-+...+++|+-|.+|++|+ +.++|+.-.. ...++|.
T Consensus 86 wDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQild----------------ea~D~V~ 149 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILD----------------EAKDGVS 149 (307)
T ss_pred EEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhh----------------hhcCcee
Confidence 99999876 46667799999999999999999999999999995 4455542211 1225677
Q ss_pred EEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeC
Q 000736 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER 257 (1323)
Q Consensus 178 ~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~ 257 (1323)
+|.-+. .-++ .++. |+++|.||.+.|++.+-. ...+|++++|||||+....++-+ .++++.|+
T Consensus 150 Si~v~~--heIv-aGS~------DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l~------stlrLlDk 212 (307)
T KOG0316|consen 150 SIDVAE--HEIV-AGSV------DGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSLD------STLRLLDK 212 (307)
T ss_pred EEEecc--cEEE-eecc------CCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeecc------ceeeeccc
Confidence 776553 3344 3554 589999998899876543 44568999999999987777765 46999986
Q ss_pred C-CeeEEEEEeccCC-CCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCC-cEEEEEccCCCcE
Q 000736 258 N-GLERSSFDINEQI-DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRD-GIRFMWHPTKPLQ 334 (1323)
Q Consensus 258 n-Gl~~~~f~l~~~~-~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~-~~~v~Wsp~~~~~ 334 (1323)
. |...+.+. ++. ..-=....++..-+..+++++|+ .|.+||+-+.+-..|- ..+..- ...+.+||..+.
T Consensus 213 ~tGklL~sYk--Ghkn~eykldc~l~qsdthV~sgSEDG---~Vy~wdLvd~~~~sk~--~~~~~v~v~dl~~hp~~~~- 284 (307)
T KOG0316|consen 213 ETGKLLKSYK--GHKNMEYKLDCCLNQSDTHVFSGSEDG---KVYFWDLVDETQISKL--SVVSTVIVTDLSCHPTMDD- 284 (307)
T ss_pred chhHHHHHhc--ccccceeeeeeeecccceeEEeccCCc---eEEEEEeccceeeeee--ccCCceeEEeeecccCccc-
Confidence 4 33222221 111 11122455677778899999999 8999999887643322 221111 267889998765
Q ss_pred EEEEec
Q 000736 335 LICWTL 340 (1323)
Q Consensus 335 L~~~~~ 340 (1323)
+.+.+.
T Consensus 285 f~~A~~ 290 (307)
T KOG0316|consen 285 FITATG 290 (307)
T ss_pred eeEecC
Confidence 555553
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.6e-15 Score=164.18 Aligned_cols=273 Identities=14% Similarity=0.115 Sum_probs=187.9
Q ss_pred CCCEEEEEEecCC-CEEEEEeCCCcEEEEeCCCCeE-EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeee
Q 000736 75 GDSITAFDYLMEK-EALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYE 152 (1323)
Q Consensus 75 ~~~V~~v~~spdg-~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e 152 (1323)
-+.|.+++=+|.. ..+++|+.||.|+|||+.+..+ ..+..|.|-|..++++- +.+.+++.|+||+.|.-+..++..
T Consensus 66 rdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~t 143 (433)
T KOG0268|consen 66 RDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHT 143 (433)
T ss_pred ccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCccee
Confidence 3688888888877 7899999999999999988544 36667889999999986 788999999999999877655444
Q ss_pred eeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEcc
Q 000736 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP 232 (1323)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsP 232 (1323)
+.... .+..|.=.--+..|||+| ..|-|||.+-...++.+.-....+.++.|+|
T Consensus 144 ilg~s-----------------~~~gIdh~~~~~~FaTcG---------e~i~IWD~~R~~Pv~smswG~Dti~svkfNp 197 (433)
T KOG0268|consen 144 ILGKS-----------------VYLGIDHHRKNSVFATCG---------EQIDIWDEQRDNPVSSMSWGADSISSVKFNP 197 (433)
T ss_pred eeccc-----------------cccccccccccccccccC---------ceeeecccccCCccceeecCCCceeEEecCC
Confidence 32211 123333333455688443 5799999866666666655555679999999
Q ss_pred CCC-eEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeE
Q 000736 233 SGA-NIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1323)
Q Consensus 233 dG~-lIAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wy 310 (1323)
--. .||++..| ..|++||. .+.......+ .-.-+.|+|||.+-.+.++.+|. .+..+|+.+.+
T Consensus 198 vETsILas~~sD------rsIvLyD~R~~~Pl~KVi~----~mRTN~IswnPeafnF~~a~ED~---nlY~~DmR~l~-- 262 (433)
T KOG0268|consen 198 VETSILASCASD------RSIVLYDLRQASPLKKVIL----TMRTNTICWNPEAFNFVAANEDH---NLYTYDMRNLS-- 262 (433)
T ss_pred CcchheeeeccC------CceEEEecccCCccceeee----eccccceecCccccceeeccccc---cceehhhhhhc--
Confidence 764 67777665 46999993 3322222222 22456899999999999999988 78888887644
Q ss_pred EEeEEEEecC---CcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeee
Q 000736 311 LKYEIRYLRR---DGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFS 387 (1323)
Q Consensus 311 lkq~l~~~~~---~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~ 387 (1323)
..+..+.+ ....|.|+|.|.. ++.++-|- .|.+.+.+.. -.+.
T Consensus 263 --~p~~v~~dhvsAV~dVdfsptG~E-fvsgsyDk-------------------------sIRIf~~~~~------~SRd 308 (433)
T KOG0268|consen 263 --RPLNVHKDHVSAVMDVDFSPTGQE-FVSGSYDK-------------------------SIRIFPVNHG------HSRD 308 (433)
T ss_pred --ccchhhcccceeEEEeccCCCcch-hccccccc-------------------------eEEEeecCCC------cchh
Confidence 33333322 2277889988764 44433333 3333333221 0111
Q ss_pred ecCC---CCEEEEEEecCCCCCEEEEEECCCcEEEEECCCCC
Q 000736 388 LKFP---TAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPD 426 (1323)
Q Consensus 388 l~~~---~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~ 426 (1323)
+-|. ..|.+|.||.|. +.+.+||.|++|+||......
T Consensus 309 iYhtkRMq~V~~Vk~S~Ds--kyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 309 IYHTKRMQHVFCVKYSMDS--KYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred hhhHhhhheeeEEEEeccc--cEEEecCCCcceeeeecchhh
Confidence 2121 258999999999 999999999999999986543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-10 Score=137.02 Aligned_cols=252 Identities=13% Similarity=0.150 Sum_probs=160.9
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1323)
++....|+.....|.+...++.|+.|-+ +.+. |--. +. .-...+.|.++.|..||..+|++.+||.|++
T Consensus 73 sV~vvTWNe~~QKLTtSDt~GlIiVWml--ykgs--W~EE-----Mi--NnRnKSvV~SmsWn~dG~kIcIvYeDGavIV 141 (1189)
T KOG2041|consen 73 SVMVVTWNENNQKLTTSDTSGLIIVWML--YKGS--WCEE-----MI--NNRNKSVVVSMSWNLDGTKICIVYEDGAVIV 141 (1189)
T ss_pred eEEEEEeccccccccccCCCceEEEEee--eccc--HHHH-----Hh--hCcCccEEEEEEEcCCCcEEEEEEccCCEEE
Confidence 7788889998898988888999999988 4443 4211 11 0111357999999999999999999999999
Q ss_pred EeCCCCeE---EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCce----------------------eeeeeec
Q 000736 102 HSVDGNAT---EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDL----------------------LYENPLE 156 (1323)
Q Consensus 102 w~~~~~~~---e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~----------------------~~e~~l~ 156 (1323)
=++++.++ +..|.+ ...+-||||.+.+..+-..|.+.+.+..++- +.+..+.
T Consensus 142 GsvdGNRIwgKeLkg~~---l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~ 218 (1189)
T KOG2041|consen 142 GSVDGNRIWGKELKGQL---LAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWN 218 (1189)
T ss_pred Eeeccceecchhcchhe---ccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeec
Confidence 88888665 344443 2356799999998888888888776532221 1111111
Q ss_pred ccC-----CCceec-----cC--ccc-----------cCCCCeEEEEEecCCcEEEEeeccccc---cCCCCEEEEEECC
Q 000736 157 ELA-----EGFDVH-----EP--ELS-----------SSFSFKSPISWRGDGKYFATLSEFCNS---SKLHKRLKVWERD 210 (1323)
Q Consensus 157 ~~~-----~~~~Vs-----~t--qf~-----------~~~~~i~~isWspDG~~lAtvss~d~~---~~~d~~IrVWd~~ 210 (1323)
+.+ ...++- .. |.. ...-.++.+.|+++|.+|| +.+.+.. +...+.|..|.+
T Consensus 219 ~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLA-vcG~~~da~~~~d~n~v~Fysp- 296 (1189)
T KOG2041|consen 219 TGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLA-VCGNDSDADEPTDSNKVHFYSP- 296 (1189)
T ss_pred cCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEE-EccCcccccCccccceEEEecc-
Confidence 111 000000 00 000 1113567889999999999 6554321 123358999999
Q ss_pred CCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEE
Q 000736 211 SGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAV 290 (1323)
Q Consensus 211 ~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~ 290 (1323)
-|+...++.....-+++++|--.|-.||-+-+. .|-|=+. +- ...|..-.+.++..
T Consensus 297 ~G~i~gtlkvpg~~It~lsWEg~gLriA~Avds-------fiyfanI----RP-------------~ykWgy~e~TvVy~ 352 (1189)
T KOG2041|consen 297 YGHIVGTLKVPGSCITGLSWEGTGLRIAIAVDS-------FIYFANI----RP-------------EYKWGYIEETVVYV 352 (1189)
T ss_pred chhheEEEecCCceeeeeEEcCCceEEEEEecc-------eEEEEee----cc-------------cceEEEeeeEEEEE
Confidence 999999998777788999999999999877542 3433221 11 11232223333222
Q ss_pred E--ccCCCCeEEEEEeeCCeeEEEe
Q 000736 291 V--RFEEYDSVKICFFSNNHWYLKY 313 (1323)
Q Consensus 291 ~--~d~~~~~V~LW~~~n~~wylkq 313 (1323)
. .+.+...|.+||+.+..-|+|.
T Consensus 353 y~~~e~p~y~i~Fwdtk~nek~vK~ 377 (1189)
T KOG2041|consen 353 YQKEELPQYGIMFWDTKTNEKTVKT 377 (1189)
T ss_pred EccCCCcceEEEEEecccChhhhhh
Confidence 2 2223447999999987776664
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-14 Score=154.12 Aligned_cols=236 Identities=14% Similarity=0.103 Sum_probs=170.6
Q ss_pred CCCEEEEEEecCC-CEEEEEeCCCcEEEEeCCC--CeEEEeceecCcEEEEEEcCC-CCeEEEEeCCccEEEEeecCcee
Q 000736 75 GDSITAFDYLMEK-EALIVGTSSGLLLLHSVDG--NATEVVGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMTHDWDLL 150 (1323)
Q Consensus 75 ~~~V~~v~~spdg-~~La~as~dG~I~lw~~~~--~~~e~vg~~~~~I~~~awSPD-G~~LA~~s~d~tV~l~t~~~d~~ 150 (1323)
.|.+-+|+|++.- .++++++.||.++|||..- +.+.+...|...|.++.|++- ++.++++|-|+||++|. +.
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~----~~ 135 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWD----PN 135 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeec----CC
Confidence 5789999999976 4677889999999999532 345567778999999999984 66777779999999874 32
Q ss_pred eeeeecccCCCceeccCccccCCCCeEEEEEec-CCcEEEEeeccccccCCCCEEEEEECC-CCceeeeeccCCCceeEE
Q 000736 151 YENPLEELAEGFDVHEPELSSSFSFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAFMGAVL 228 (1323)
Q Consensus 151 ~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWsp-DG~~lAtvss~d~~~~~d~~IrVWd~~-~G~l~~t~e~~~~~v~sl 228 (1323)
....+ ..|.+|.+-|.+..||| ++..||++| +|++.|+||.+ .|+.+. .+.|+..+-+.
T Consensus 136 r~~Sv-----------~Tf~gh~~~Iy~a~~sp~~~nlfas~S-------gd~~l~lwdvr~~gk~~~-i~ah~~Eil~c 196 (311)
T KOG0277|consen 136 RPNSV-----------QTFNGHNSCIYQAAFSPHIPNLFASAS-------GDGTLRLWDVRSPGKFMS-IEAHNSEILCC 196 (311)
T ss_pred CCcce-----------EeecCCccEEEEEecCCCCCCeEEEcc-------CCceEEEEEecCCCceeE-EEeccceeEee
Confidence 22222 23668889999999999 467888443 47999999964 577766 67788778899
Q ss_pred EEccCC-CeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccC-CCeeEEEEccCCCCeEEEEEeeC
Q 000736 229 EWMPSG-ANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCM-SDLLAAVVRFEEYDSVKICFFSN 306 (1323)
Q Consensus 229 awsPdG-~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpD-g~~LA~~~~d~~~~~V~LW~~~n 306 (1323)
.|+.-. +.+|+++.| ..|+.||...++..-|.|.++ +..|..|+|||- ..+||+++.|. |++||+...
T Consensus 197 dw~ky~~~vl~Tg~vd------~~vr~wDir~~r~pl~eL~gh-~~AVRkvk~Sph~~~lLaSasYDm---T~riw~~~~ 266 (311)
T KOG0277|consen 197 DWSKYNHNVLATGGVD------NLVRGWDIRNLRTPLFELNGH-GLAVRKVKFSPHHASLLASASYDM---TVRIWDPER 266 (311)
T ss_pred cccccCCcEEEecCCC------ceEEEEehhhccccceeecCC-ceEEEEEecCcchhhHhhhccccc---eEEeccccc
Confidence 998854 577888775 569999966566656666544 567999999997 46899999999 999999763
Q ss_pred CeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcE
Q 000736 307 NHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQI 344 (1323)
Q Consensus 307 ~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~ 344 (1323)
.+- ++....-|..-...+.|++-.+..++....|+.+
T Consensus 267 ~ds-~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l 303 (311)
T KOG0277|consen 267 QDS-AIETVDHHTEFVCGLDWSLFDPGQVASTGWDELL 303 (311)
T ss_pred chh-hhhhhhccceEEeccccccccCceeeecccccce
Confidence 221 1111111111124577887766655554444443
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.4e-15 Score=162.78 Aligned_cols=272 Identities=14% Similarity=0.185 Sum_probs=187.1
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeee
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~ 153 (1323)
.+.|.+++| |.+.+++|+.|.||++||.++..+. ++-.|.+.|.|+.+ |.+.|++||.|.||++|+ .-++.
T Consensus 197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWD----v~tge 268 (499)
T KOG0281|consen 197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWD----VNTGE 268 (499)
T ss_pred CCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEe----ccCCc
Confidence 468999988 4567999999999999999986653 44456999999988 567999999999998875 33344
Q ss_pred eecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCC---ceeeeeccCCCceeEEEE
Q 000736 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG---TLQASSELKAFMGAVLEW 230 (1323)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G---~l~~t~e~~~~~v~slaw 230 (1323)
++.+.- +|.+.|..+.|+. | |++|+| .|++++|||...- .+...+-+|...|+.+.|
T Consensus 269 ~l~tli-----------hHceaVLhlrf~n-g-~mvtcS-------kDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf 328 (499)
T KOG0281|consen 269 PLNTLI-----------HHCEAVLHLRFSN-G-YMVTCS-------KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF 328 (499)
T ss_pred hhhHHh-----------hhcceeEEEEEeC-C-EEEEec-------CCceeEEEeccCchHHHHHHHHhhhhhheeeecc
Confidence 443322 4556778888873 5 566343 4699999998432 233345678888999998
Q ss_pred ccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEE--eccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCe
Q 000736 231 MPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFD--INEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1323)
Q Consensus 231 sPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~--l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~ 308 (1323)
+. ++|++++.| .+|+.|+.. .++|. +.++ ...|-.+.+ .|+++++|++|. +|+||+...+.
T Consensus 329 d~--kyIVsASgD------RTikvW~~s---t~efvRtl~gH-kRGIAClQY--r~rlvVSGSSDn---tIRlwdi~~G~ 391 (499)
T KOG0281|consen 329 DD--KYIVSASGD------RTIKVWSTS---TCEFVRTLNGH-KRGIACLQY--RDRLVVSGSSDN---TIRLWDIECGA 391 (499)
T ss_pred cc--ceEEEecCC------ceEEEEecc---ceeeehhhhcc-cccceehhc--cCeEEEecCCCc---eEEEEeccccH
Confidence 64 599999986 469999965 34553 3233 334555554 589999999998 99999997654
Q ss_pred eEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCC----Cce
Q 000736 309 WYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPP----PMY 384 (1323)
Q Consensus 309 wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPp----pm~ 384 (1323)
. -..+.+|..-..++.|+.. +++.+.-| .+|++|+|..+.-|. .+|
T Consensus 392 c--LRvLeGHEeLvRciRFd~k---rIVSGaYD-------------------------GkikvWdl~aaldpra~~~~~C 441 (499)
T KOG0281|consen 392 C--LRVLEGHEELVRCIRFDNK---RIVSGAYD-------------------------GKIKVWDLQAALDPRAPASTLC 441 (499)
T ss_pred H--HHHHhchHHhhhheeecCc---eeeecccc-------------------------ceEEEEecccccCCcccccchH
Confidence 2 1223333222245555532 23332222 256777776554442 356
Q ss_pred eeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCCC
Q 000736 385 LFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1323)
Q Consensus 385 ~~~l-~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~ 425 (1323)
..++ +|++.|..+-|- . ..+.+.++|.+|-+|++.+.
T Consensus 442 l~~lv~hsgRVFrLQFD--~--fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 442 LRTLVEHSGRVFRLQFD--E--FQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred HHhhhhccceeEEEeec--c--eEEEeccCCCeEEEEEcCCC
Confidence 6555 688899999883 3 57888899999999999653
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.2e-14 Score=157.36 Aligned_cols=256 Identities=12% Similarity=0.110 Sum_probs=181.8
Q ss_pred cCceeccccccccccccccc--ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEE
Q 000736 2 NNLKLCAEVPLNLELQSKDE--ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSIT 79 (1323)
Q Consensus 2 rNL~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~ 79 (1323)
+|+++++...-++-.-.+|. .|+...+.++.+.+..+|.|..|+.|.....+ + ..+ ++.| ...|+
T Consensus 241 ~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-~--~~~------~~~h----~~~V~ 307 (506)
T KOG0289|consen 241 KTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-E--PTS------SRPH----EEPVT 307 (506)
T ss_pred CceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-C--ccc------cccc----cccce
Confidence 35555554333322233343 68888899999999999999999999984111 1 111 2223 46899
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEeceec---CcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeec
Q 000736 80 AFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVE---GGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLE 156 (1323)
Q Consensus 80 ~v~~spdg~~La~as~dG~I~lw~~~~~~~e~vg~~~---~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~ 156 (1323)
.++-+|.|++|.+++.||++...+..++..-++-.++ -.+++++|.|||-++++++.|+.|++|+- -....
T Consensus 308 ~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdl----ks~~~-- 381 (506)
T KOG0289|consen 308 GLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDL----KSQTN-- 381 (506)
T ss_pred eeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEc----CCccc--
Confidence 9999999999999999999999999887665444433 45999999999999999999999998752 11111
Q ss_pred ccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCC-CceeEEEEccCCC
Q 000736 157 ELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA-FMGAVLEWMPSGA 235 (1323)
Q Consensus 157 ~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~-~~v~slawsPdG~ 235 (1323)
...|.+|.+.|..|+|+-+|.|+| ++. .|+.|++||.+.-+...+..-.+ ..+.+++|-++|.
T Consensus 382 ---------~a~Fpght~~vk~i~FsENGY~La-t~a------dd~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt 445 (506)
T KOG0289|consen 382 ---------VAKFPGHTGPVKAISFSENGYWLA-TAA------DDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGT 445 (506)
T ss_pred ---------cccCCCCCCceeEEEeccCceEEE-EEe------cCCeEEEEEehhhcccceeeccccccceeEEEcCCCC
Confidence 135668889999999999999999 654 35679999986666555543222 2578999999999
Q ss_pred eEEEEecCCCCCCCCeEEEEeCCCeeEEEE-EeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEE
Q 000736 236 NIAAVYDRKSENKCPSIVFYERNGLERSSF-DINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKIC 302 (1323)
Q Consensus 236 lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f-~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW 302 (1323)
+++.++.+ ..|-.+.+....-.+. .+.. +.+....+.|..+-++||+++-|. .++++
T Consensus 446 ~L~~~g~~------l~Vy~~~k~~k~W~~~~~~~~-~sg~st~v~Fg~~aq~l~s~smd~---~l~~~ 503 (506)
T KOG0289|consen 446 YLGIAGSD------LQVYICKKKTKSWTEIKELAD-HSGLSTGVRFGEHAQYLASTSMDA---ILRLY 503 (506)
T ss_pred eEEeecce------eEEEEEecccccceeeehhhh-cccccceeeecccceEEeeccchh---heEEe
Confidence 99988653 3455554321111110 1111 234677899999999999999988 66554
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.8e-14 Score=153.02 Aligned_cols=310 Identities=14% Similarity=0.227 Sum_probs=193.5
Q ss_pred ceeEEeeecCCCEEEEE-eCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEE-EEeCCCcE
Q 000736 22 ILQFSALDIEQNRLFFA-SSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALI-VGTSSGLL 99 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~-s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La-~as~dG~I 99 (1323)
.++.+-|-.|..-+.++ ..+..+..|++ .+.+ |.. +++.| .+.+.++.|||||+.|. +..-+-.|
T Consensus 50 ki~yieW~ads~~ilC~~yk~~~vqvwsl--~Qpe--w~c-kIdeg--------~agls~~~WSPdgrhiL~tseF~lri 116 (447)
T KOG4497|consen 50 KIVYIEWKADSCHILCVAYKDPKVQVWSL--VQPE--WYC-KIDEG--------QAGLSSISWSPDGRHILLTSEFDLRI 116 (447)
T ss_pred HhhheeeeccceeeeeeeeccceEEEEEe--ecce--eEE-EeccC--------CCcceeeeECCCcceEeeeecceeEE
Confidence 56677788888777766 55778999999 5555 332 23333 46899999999996554 55557778
Q ss_pred EEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCcc---EEEE-eecCceeeeeeecccCCCceeccCccccCCCC
Q 000736 100 LLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQ---ILVM-THDWDLLYENPLEELAEGFDVHEPELSSSFSF 175 (1323)
Q Consensus 100 ~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~t---V~l~-t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1323)
.+|++.+.....+.+...++..++|.|||+..|+++.-.. +.+. -++|..+.+..+.+.+
T Consensus 117 TVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~D---------------- 180 (447)
T KOG4497|consen 117 TVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTID---------------- 180 (447)
T ss_pred EEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCccc----------------
Confidence 9999999888777777788999999999999999986432 2232 2567777666655443
Q ss_pred eEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCC----------
Q 000736 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKS---------- 245 (1323)
Q Consensus 176 i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~---------- 245 (1323)
...|.|||||..+| |= |. .-+-+|..|.+..| +..++|||.|++||.|+.|+-
T Consensus 181 ltgieWsPdg~~la-Vw--d~--~Leykv~aYe~~lG------------~k~v~wsP~~qflavGsyD~~lrvlnh~tWk 243 (447)
T KOG4497|consen 181 LTGIEWSPDGNWLA-VW--DN--VLEYKVYAYERGLG------------LKFVEWSPCNQFLAVGSYDQMLRVLNHFTWK 243 (447)
T ss_pred ccCceECCCCcEEE-Ee--cc--hhhheeeeeeeccc------------eeEEEeccccceEEeeccchhhhhhceeeee
Confidence 36799999999999 52 21 12244556655222 467899999999999988721
Q ss_pred ---------CCCCCe------------------E---------EEEeCCCeeEEE------E-Eec----cCC-CCcEEE
Q 000736 246 ---------ENKCPS------------------I---------VFYERNGLERSS------F-DIN----EQI-DSTVEL 277 (1323)
Q Consensus 246 ---------~~~~~~------------------V---------~~~e~nGl~~~~------f-~l~----~~~-~~~V~~ 277 (1323)
.-.+.+ + ..|+....+..+ + .++ .++ --.+.-
T Consensus 244 ~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~ 323 (447)
T KOG4497|consen 244 PFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGK 323 (447)
T ss_pred ehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccce
Confidence 000000 0 001000000000 0 010 000 124778
Q ss_pred EEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCc-EEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeC
Q 000736 278 LKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVM 356 (1323)
Q Consensus 278 laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~ 356 (1323)
|+||||++++|+..+.- -+.+.+||+.|.+- .-...+..+ ..+.|||..|. |.+.++ .... +.|..+
T Consensus 324 lafs~Ds~y~aTrnd~~-PnalW~Wdlq~l~l----~avLiQk~piraf~WdP~~pr-L~vctg--~srL--Y~W~ps-- 391 (447)
T KOG4497|consen 324 LAFSCDSTYAATRNDKY-PNALWLWDLQNLKL----HAVLIQKHPIRAFEWDPGRPR-LVVCTG--KSRL--YFWAPS-- 391 (447)
T ss_pred eeecCCceEEeeecCCC-CceEEEEechhhhh----hhhhhhccceeEEEeCCCCce-EEEEcC--CceE--EEEcCC--
Confidence 99999999999986543 34799999987431 001112344 77899999886 666553 2222 234322
Q ss_pred CCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCC
Q 000736 357 ENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDG 415 (1323)
Q Consensus 357 d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dg 415 (1323)
+...| .+|.|- -+|.++-|.-+| ..++..+.|.
T Consensus 392 g~~~V----------------~vP~~G--------F~i~~l~W~~~g--~~i~l~~kDa 424 (447)
T KOG4497|consen 392 GPRVV----------------GVPKKG--------FNIQKLQWLQPG--EFIVLCGKDA 424 (447)
T ss_pred CceEE----------------ecCCCC--------ceeeeEEecCCC--cEEEEEcCCc
Confidence 11000 112211 257888999998 7777777764
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-13 Score=150.24 Aligned_cols=259 Identities=13% Similarity=0.134 Sum_probs=183.0
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEec--CCCEEEEEeCCCcE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM--EKEALIVGTSSGLL 99 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~sp--dg~~La~as~dG~I 99 (1323)
.+.+.+||.-|+++..||.|..+..||.+ ...+.|.++ +.-+.| ++.|+.|.|.+ =|+.+|+++.|+++
T Consensus 15 lihdVs~D~~GRRmAtCSsDq~vkI~d~~--~~s~~W~~T---s~Wrah----~~Si~rV~WAhPEfGqvvA~cS~Drtv 85 (361)
T KOG2445|consen 15 LIHDVSFDFYGRRMATCSSDQTVKIWDST--SDSGTWSCT---SSWRAH----DGSIWRVVWAHPEFGQVVATCSYDRTV 85 (361)
T ss_pred eeeeeeecccCceeeeccCCCcEEEEecc--CCCCceEEe---eeEEec----CCcEEEEEecCccccceEEEEecCCce
Confidence 78999999999999999999999999974 333335543 123434 57899999955 38999999999999
Q ss_pred EEEeCCC-------CeE---EEeceecCcEEEEEEcCC--CCeEEEEeCCccEEEEe-------ecCceeeeeeecccCC
Q 000736 100 LLHSVDG-------NAT---EVVGRVEGGVRFISPSPD--GDLLGVTTGFGQILVMT-------HDWDLLYENPLEELAE 160 (1323)
Q Consensus 100 ~lw~~~~-------~~~---e~vg~~~~~I~~~awSPD--G~~LA~~s~d~tV~l~t-------~~~d~~~e~~l~~~~~ 160 (1323)
.||..+. .+. ..+-.-.+.|+.+.|+|- |=.||+++.||+|+++. +.|.+.+|+..-..+.
T Consensus 86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 9998732 121 122222567999999997 67899999999999863 3466666665333321
Q ss_pred CceeccCccccCCCCeEEEEEecCC---cEEEEeeccccccCCCCEEEEEECCCC--cee--eeeccCCCceeEEEEccC
Q 000736 161 GFDVHEPELSSSFSFKSPISWRGDG---KYFATLSEFCNSSKLHKRLKVWERDSG--TLQ--ASSELKAFMGAVLEWMPS 233 (1323)
Q Consensus 161 ~~~Vs~tqf~~~~~~i~~isWspDG---~~lAtvss~d~~~~~d~~IrVWd~~~G--~l~--~t~e~~~~~v~slawsPd 233 (1323)
++ +.....+++|+|-- ++|| +|+.+. +..-+.++||...++ +.+ .++..|..+|.+|+|.|+
T Consensus 166 ~~---------~~~~~~CvsWn~sr~~~p~iA-vgs~e~-a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 166 GK---------NKQPCFCVSWNPSRMHEPLIA-VGSDED-APHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred cc---------ccCcceEEeeccccccCceEE-EEcccC-CccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence 11 12345899999643 4889 886442 134468999987543 233 345678899999999997
Q ss_pred -C---CeEEEEecCCCCCCCCeEEEEeCCCee-------------EEEEEec-----cCCCCcEEEEEEccCCCeeEEEE
Q 000736 234 -G---ANIAAVYDRKSENKCPSIVFYERNGLE-------------RSSFDIN-----EQIDSTVELLKWNCMSDLLAAVV 291 (1323)
Q Consensus 234 -G---~lIAs~s~d~~~~~~~~V~~~e~nGl~-------------~~~f~l~-----~~~~~~V~~laWSpDg~~LA~~~ 291 (1323)
| .+||+++.|+ |++|...+.+ .+.+.+. ..|.+.|+.+.||--|++|++.+
T Consensus 235 ~Gr~y~~lAvA~kDg-------v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStG 307 (361)
T KOG2445|consen 235 IGRSYHLLAVATKDG-------VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTG 307 (361)
T ss_pred cCCceeeEEEeecCc-------EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecC
Confidence 3 4799998752 8888644321 1112221 23456899999999999999999
Q ss_pred ccCCCCeEEEEEee-CCeeE
Q 000736 292 RFEEYDSVKICFFS-NNHWY 310 (1323)
Q Consensus 292 ~d~~~~~V~LW~~~-n~~wy 310 (1323)
.|| .||||..+ |..|-
T Consensus 308 dDG---~VRLWkany~n~~k 324 (361)
T KOG2445|consen 308 DDG---CVRLWKANYNNLWK 324 (361)
T ss_pred CCc---eeeehhhhhhhhhe
Confidence 999 99999975 44453
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.3e-14 Score=162.30 Aligned_cols=265 Identities=12% Similarity=0.165 Sum_probs=185.4
Q ss_pred CCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCC--------C----eEEEeceecCcEEEEEEcCCCC-eEEEEeCC
Q 000736 72 LEPGDSITAFDYLMEKE-ALIVGTSSGLLLLHSVDG--------N----ATEVVGRVEGGVRFISPSPDGD-LLGVTTGF 137 (1323)
Q Consensus 72 ~~~~~~V~~v~~spdg~-~La~as~dG~I~lw~~~~--------~----~~e~vg~~~~~I~~~awSPDG~-~LA~~s~d 137 (1323)
+...+.|..+.|.|... .+|+.+.+|+|.|||... + .+.+.|+ ++.=..++||+..+ .|++++.|
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH-~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGH-EKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEee-cccccccccccccceeEeeccCC
Confidence 33457888888888764 566789999999999753 1 1235665 44446799999854 57888899
Q ss_pred ccEEEEeecCceeeeeeecccCCCceec-cCccccCCCCeEEEEEecCCc-EEEEeeccccccCCCCEEEEEECC--CCc
Q 000736 138 GQILVMTHDWDLLYENPLEELAEGFDVH-EPELSSSFSFKSPISWRGDGK-YFATLSEFCNSSKLHKRLKVWERD--SGT 213 (1323)
Q Consensus 138 ~tV~l~t~~~d~~~e~~l~~~~~~~~Vs-~tqf~~~~~~i~~isWspDG~-~lAtvss~d~~~~~d~~IrVWd~~--~G~ 213 (1323)
++|.+|+..-.... ++.+. -+-|++|.+.|..++|.+--+ .|++|+ .++.+.|||.+ +-+
T Consensus 200 ~~i~lwdi~~~~~~---------~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~-------dd~~L~iwD~R~~~~~ 263 (422)
T KOG0264|consen 200 HTICLWDINAESKE---------DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG-------DDGKLMIWDTRSNTSK 263 (422)
T ss_pred CcEEEEeccccccC---------CccccceEEeecCCcceehhhccccchhhheeec-------CCCeEEEEEcCCCCCC
Confidence 99988854321110 11111 234678999999999999654 566443 46899999987 445
Q ss_pred eeeeeccCCCceeEEEEccCC-CeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccC-CCeeEEEE
Q 000736 214 LQASSELKAFMGAVLEWMPSG-ANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCM-SDLLAAVV 291 (1323)
Q Consensus 214 l~~t~e~~~~~v~slawsPdG-~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpD-g~~LA~~~ 291 (1323)
...+-..|++.+++++|+|-+ .+||+++.|+ +|.+||+-.+.+.-.++.++ ...|..|.|||. .++||+.+
T Consensus 264 ~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~------tV~LwDlRnL~~~lh~~e~H-~dev~~V~WSPh~etvLASSg 336 (422)
T KOG0264|consen 264 PSHSVKAHSAEVNCVAFNPFNEFILATGSADK------TVALWDLRNLNKPLHTFEGH-EDEVFQVEWSPHNETVLASSG 336 (422)
T ss_pred CcccccccCCceeEEEeCCCCCceEEeccCCC------cEEEeechhcccCceeccCC-CcceEEEEeCCCCCceeEecc
Confidence 555567789999999999965 5789999864 69999965565543334443 567999999997 46899999
Q ss_pred ccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEE
Q 000736 292 RFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILV 371 (1323)
Q Consensus 292 ~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~l 371 (1323)
.|+ .+.+||++.-. -+| + |+. +
T Consensus 337 ~D~---rl~vWDls~ig--~eq----------~----~ed----------a----------------------------- 358 (422)
T KOG0264|consen 337 TDR---RLNVWDLSRIG--EEQ----------S----PED----------A----------------------------- 358 (422)
T ss_pred cCC---cEEEEeccccc--ccc----------C----hhh----------h-----------------------------
Confidence 999 89999986410 000 0 000 0
Q ss_pred eecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCC
Q 000736 372 TPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1323)
Q Consensus 372 t~l~~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~ 424 (1323)
..-||.+-+..-+|.+.|++++|+|+-. -.+|+++.|+.+.||+...
T Consensus 359 -----~dgppEllF~HgGH~~kV~DfsWnp~eP-W~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 359 -----EDGPPELLFIHGGHTAKVSDFSWNPNEP-WTIASVAEDNILQIWQMAE 405 (422)
T ss_pred -----ccCCcceeEEecCcccccccccCCCCCC-eEEEEecCCceEEEeeccc
Confidence 0114433332335788899999999863 6899999999999999874
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-14 Score=168.80 Aligned_cols=273 Identities=14% Similarity=0.101 Sum_probs=182.8
Q ss_pred cCCCEEEEEeCCCcEEEEeCCC--Ce-----EEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecc
Q 000736 85 MEKEALIVGTSSGLLLLHSVDG--NA-----TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEE 157 (1323)
Q Consensus 85 pdg~~La~as~dG~I~lw~~~~--~~-----~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~ 157 (1323)
|.+++|.+|+.||.|++|+... +. +....+|.++|+.++.--+|+.|+++|.|-||++|+..-+. ..+..+
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~--~~c~st 112 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN--TFCMST 112 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc--chhHhh
Confidence 4566799999999999999864 22 22456789999999999999999999999999998643221 122222
Q ss_pred cCCCceeccCccccCCCCeEEEEE-ecCCcEEEEeeccccccCCCCEEEEEECCCC--ceeeeec---------cCCCce
Q 000736 158 LAEGFDVHEPELSSSFSFKSPISW-RGDGKYFATLSEFCNSSKLHKRLKVWERDSG--TLQASSE---------LKAFMG 225 (1323)
Q Consensus 158 ~~~~~~Vs~tqf~~~~~~i~~isW-spDG~~lAtvss~d~~~~~d~~IrVWd~~~G--~l~~t~e---------~~~~~v 225 (1323)
. ..|++.|.+++. -++...+| +++. |+.|.|||.++| ++..+++ ++...+
T Consensus 113 i-----------r~H~DYVkcla~~ak~~~lva-SgGL------D~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~si 174 (735)
T KOG0308|consen 113 I-----------RTHKDYVKCLAYIAKNNELVA-SGGL------DRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSI 174 (735)
T ss_pred h-----------hcccchheeeeecccCceeEE-ecCC------CccEEEEEccCcchhhhhhccccccccCCCCCccce
Confidence 2 257788899999 78888877 6654 589999999877 3333222 344567
Q ss_pred eEEEEccCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEe
Q 000736 226 AVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1323)
Q Consensus 226 ~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~ 304 (1323)
.++|-+|.|..|++|+-. .+++||+. .+.+. ..|++| +..|..|--++||+.+.++++|+ +|+||++
T Consensus 175 YSLA~N~t~t~ivsGgte------k~lr~wDprt~~ki--mkLrGH-TdNVr~ll~~dDGt~~ls~sSDg---tIrlWdL 242 (735)
T KOG0308|consen 175 YSLAMNQTGTIIVSGGTE------KDLRLWDPRTCKKI--MKLRGH-TDNVRVLLVNDDGTRLLSASSDG---TIRLWDL 242 (735)
T ss_pred eeeecCCcceEEEecCcc------cceEEeccccccce--eeeecc-ccceEEEEEcCCCCeEeecCCCc---eEEeeec
Confidence 999999999999998863 57999994 33332 345544 67899999999999999999999 9999999
Q ss_pred eCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCce
Q 000736 305 SNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMY 384 (1323)
Q Consensus 305 ~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~ 384 (1323)
+..++. +++..|....+++.=+|.= ..++.+..+ +.|..|+++.. --+
T Consensus 243 gqQrCl--~T~~vH~e~VWaL~~~~sf-~~vYsG~rd-------------------------~~i~~Tdl~n~----~~~ 290 (735)
T KOG0308|consen 243 GQQRCL--ATYIVHKEGVWALQSSPSF-THVYSGGRD-------------------------GNIYRTDLRNP----AKS 290 (735)
T ss_pred ccccee--eeEEeccCceEEEeeCCCc-ceEEecCCC-------------------------CcEEecccCCc----hhh
Confidence 876642 3344432221222111111 112222222 23455555531 011
Q ss_pred eeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECC
Q 000736 385 LFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1323)
Q Consensus 385 ~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~ 423 (1323)
..-.+-+.+|..+..+-+. +.+-+++.|+.|+-|...
T Consensus 291 tlick~daPv~~l~~~~~~--~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 291 TLICKEDAPVLKLHLHEHD--NSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred eEeecCCCchhhhhhcccc--CCceeeeccccceecCCc
Confidence 1111345566666665443 445777889999988765
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.5e-13 Score=145.90 Aligned_cols=283 Identities=14% Similarity=0.135 Sum_probs=181.6
Q ss_pred CCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeee
Q 000736 73 EPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYE 152 (1323)
Q Consensus 73 ~~~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e 152 (1323)
.|.+.|.+|.|+|.+..|++++-||++++|+..+..+...=.|...|.+.+|-++ ..+++|+-||+|++.+.... .+
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~--~~ 87 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTG--NE 87 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCC--cc
Confidence 4568999999999999999999999999999988655433346889999999986 78899999999987543221 11
Q ss_pred eeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEcc
Q 000736 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP 232 (1323)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsP 232 (1323)
. +...|+..+.+|..++--..++ +++ .|++|++||..+-...-+++. ...|.++ +-
T Consensus 88 ~--------------~igth~~~i~ci~~~~~~~~vI-sgs------WD~~ik~wD~R~~~~~~~~d~-~kkVy~~--~v 143 (323)
T KOG1036|consen 88 D--------------QIGTHDEGIRCIEYSYEVGCVI-SGS------WDKTIKFWDPRNKVVVGTFDQ-GKKVYCM--DV 143 (323)
T ss_pred e--------------eeccCCCceEEEEeeccCCeEE-Ecc------cCccEEEEecccccccccccc-CceEEEE--ec
Confidence 1 2224667889999986433344 354 468999999854333333332 2234444 45
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec-cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEE
Q 000736 233 SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN-EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYL 311 (1323)
Q Consensus 233 dG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~-~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wyl 311 (1323)
.|+.|..|..+ ..|.+||.-.+.. -|..+ ..-...+.+|+.-|+++=.|+++-+| .|-+=..
T Consensus 144 ~g~~LvVg~~~------r~v~iyDLRn~~~-~~q~reS~lkyqtR~v~~~pn~eGy~~sSieG---RVavE~~------- 206 (323)
T KOG1036|consen 144 SGNRLVVGTSD------RKVLIYDLRNLDE-PFQRRESSLKYQTRCVALVPNGEGYVVSSIEG---RVAVEYF------- 206 (323)
T ss_pred cCCEEEEeecC------ceEEEEEcccccc-hhhhccccceeEEEEEEEecCCCceEEEeecc---eEEEEcc-------
Confidence 67777776654 4688998422211 11111 11124588999999888888888777 3321111
Q ss_pred EeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCC
Q 000736 312 KYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFP 391 (1323)
Q Consensus 312 kq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~~~ 391 (1323)
++. +. .+. ..+.|.-. . ..-+|..+ -
T Consensus 207 ----------------d~s-~~-----~~s-----kkyaFkCH--r----~~~~~~~~---------------------~ 232 (323)
T KOG1036|consen 207 ----------------DDS-EE-----AQS-----KKYAFKCH--R----LSEKDTEI---------------------I 232 (323)
T ss_pred ----------------CCc-hH-----Hhh-----hceeEEee--e----cccCCceE---------------------E
Confidence 110 00 000 00111100 0 00011111 1
Q ss_pred CCEEEEEEecCCCCCEEEEEECCCcEEEEECCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEec
Q 000736 392 TAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHH 467 (1323)
Q Consensus 392 ~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~ 467 (1323)
-+|++++|+|-. +.||++++||-|.+|+..+...+..+.+. ..+|..++|+.||..||+++.
T Consensus 233 yPVNai~Fhp~~--~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~------------~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 233 YPVNAIAFHPIH--GTFATGGSDGIVNIWDLFNRKRLKQLAKY------------ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEeceeEecccc--ceEEecCCCceEEEccCcchhhhhhccCC------------CCceEEEEeccCCCeEEEEec
Confidence 268999999997 89999999999999999875444233221 246999999999999999875
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-13 Score=166.11 Aligned_cols=223 Identities=12% Similarity=0.046 Sum_probs=142.5
Q ss_pred CCEEEEEEecCCCEEEEEeC---CCcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEe-CCcc--EEEEeecCce
Q 000736 76 DSITAFDYLMEKEALIVGTS---SGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTT-GFGQ--ILVMTHDWDL 149 (1323)
Q Consensus 76 ~~V~~v~~spdg~~La~as~---dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s-~d~t--V~l~t~~~d~ 149 (1323)
+.+.+..|||||+.|+..+. +..|.+|++.+++.+.+....+.+.+.+|||||+.||.+. .+|. |.+|+.....
T Consensus 199 ~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~ 278 (429)
T PRK03629 199 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ 278 (429)
T ss_pred CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence 46889999999999997652 3468999999887765555556677899999999999773 3554 5555432111
Q ss_pred eeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEE
Q 000736 150 LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLE 229 (1323)
Q Consensus 150 ~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~sla 229 (1323)
. ..+. .+...+...+|+|||+.|++++. . .+.-.|.++|..+|+...... ..+.....+
T Consensus 279 ~--~~lt--------------~~~~~~~~~~wSPDG~~I~f~s~-~---~g~~~Iy~~d~~~g~~~~lt~-~~~~~~~~~ 337 (429)
T PRK03629 279 I--RQVT--------------DGRSNNTEPTWFPDSQNLAYTSD-Q---AGRPQVYKVNINGGAPQRITW-EGSQNQDAD 337 (429)
T ss_pred E--EEcc--------------CCCCCcCceEECCCCCEEEEEeC-C---CCCceEEEEECCCCCeEEeec-CCCCccCEE
Confidence 1 1111 11123468999999999984442 1 122355566876665544322 233346789
Q ss_pred EccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCee
Q 000736 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1323)
Q Consensus 230 wsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~w 309 (1323)
|||||+.||.++.+.+ ...|.+|+..+..... +.. .....+.+|||||+.|+.++.++....+.+|++....
T Consensus 338 ~SpDG~~Ia~~~~~~g---~~~I~~~dl~~g~~~~--Lt~--~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~- 409 (429)
T PRK03629 338 VSSDGKFMVMVSSNGG---QQHIAKQDLATGGVQV--LTD--TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF- 409 (429)
T ss_pred ECCCCCEEEEEEccCC---CceEEEEECCCCCeEE--eCC--CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC-
Confidence 9999999998876432 4568888865433332 221 1224578899999999999988754457777775432
Q ss_pred EEEeEEEEecCCcEEEEEcc
Q 000736 310 YLKYEIRYLRRDGIRFMWHP 329 (1323)
Q Consensus 310 ylkq~l~~~~~~~~~v~Wsp 329 (1323)
.+.+..+........|+|
T Consensus 410 --~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 410 --KARLPATDGQVKFPAWSP 427 (429)
T ss_pred --eEECccCCCCcCCcccCC
Confidence 233433222335577876
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-12 Score=144.31 Aligned_cols=241 Identities=12% Similarity=0.065 Sum_probs=168.9
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeC--CCcE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTS--SGLL 99 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~--dG~I 99 (1323)
.+..+.|+.+|+.+.++|+|..+..||. ..++. +.++.+- .-.|-.+.|-.....+.-+|. |.+|
T Consensus 16 ~i~sl~fs~~G~~litss~dDsl~LYd~--~~g~~---~~ti~sk--------kyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSEDDSLRLYDS--LSGKQ---VKTINSK--------KYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred ceeEEEecCCCCEEEEecCCCeEEEEEc--CCCce---eeEeecc--------cccccEEEEecCCceEEEccCCCCCce
Confidence 7899999999999999999888999999 45543 2222211 113455556555555555555 8899
Q ss_pred EEEeCCCCe-EEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeec-CceeeeeeecccCCCceeccCccccCCCCeE
Q 000736 100 LLHSVDGNA-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1323)
Q Consensus 100 ~lw~~~~~~-~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~-~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~ 177 (1323)
+..++.+.+ +..+++|...|++++-||-++...+++-|++|++|+.. -+...-..+ ....
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~------------------~~~p 144 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL------------------SGRP 144 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec------------------CCCc
Confidence 999998866 46666679999999999999999999999999987521 111111111 1336
Q ss_pred EEEEecCCcEEEEeeccccccCCCCEEEEEECCC--Cceeeeec---cCCCceeEEEEccCCCeEEEEecCCCCCCCCeE
Q 000736 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS--GTLQASSE---LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1323)
Q Consensus 178 ~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~--G~l~~t~e---~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V 252 (1323)
.++|.|.|-+|| ++. +...|++||++. +..-.++. +.......|.|||||+.|..+... ..+
T Consensus 145 i~AfDp~GLifA-~~~------~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~------s~~ 211 (311)
T KOG1446|consen 145 IAAFDPEGLIFA-LAN------GSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA------SFI 211 (311)
T ss_pred ceeECCCCcEEE-Eec------CCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC------CcE
Confidence 689999999999 663 234999999852 22222322 112234789999999998877653 345
Q ss_pred EEEe-CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCee
Q 000736 253 VFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1323)
Q Consensus 253 ~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~w 309 (1323)
.+.+ -.|.....|.........-.+..|+|||+.+.+++.|+ +|.+|+..+.+-
T Consensus 212 ~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg---~i~vw~~~tg~~ 266 (311)
T KOG1446|consen 212 YLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDG---TIHVWNLETGKK 266 (311)
T ss_pred EEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCC---cEEEEEcCCCcE
Confidence 5666 46777676665421111235778999999999999999 999999988763
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.2e-14 Score=150.66 Aligned_cols=286 Identities=14% Similarity=0.091 Sum_probs=201.1
Q ss_pred EEeceecCcEEEEEEc---CCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCc
Q 000736 110 EVVGRVEGGVRFISPS---PDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGK 186 (1323)
Q Consensus 110 e~vg~~~~~I~~~awS---PDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~ 186 (1323)
.|-| |...|..++|| |||=.|.+++.|+.=.+ |.++. +.+| ..|-+|.+.|++.+...+..
T Consensus 9 ~c~g-htrpvvdl~~s~itp~g~flisa~kd~~pml--r~g~t-----------gdwi--gtfeghkgavw~~~l~~na~ 72 (334)
T KOG0278|consen 9 TCHG-HTRPVVDLAFSPITPDGYFLISASKDGKPML--RNGDT-----------GDWI--GTFEGHKGAVWSATLNKNAT 72 (334)
T ss_pred EEcC-CCcceeEEeccCCCCCceEEEEeccCCCchh--ccCCC-----------CCcE--EeeeccCcceeeeecCchhh
Confidence 3556 48889999998 59999999999986533 33331 1122 24557888888888877775
Q ss_pred EEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEE
Q 000736 187 YFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFD 266 (1323)
Q Consensus 187 ~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~ 266 (1323)
.-| +++. |-+-||||.-+|..+.+++ |...|.+++|+.|.+.|.+|+.++ -+++|+.|-..-.--.
T Consensus 73 ~aa-saaa------dftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ek------llrvfdln~p~App~E 138 (334)
T KOG0278|consen 73 RAA-SAAA------DFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEK------LLRVFDLNRPKAPPKE 138 (334)
T ss_pred hhh-hhcc------cchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHH------HhhhhhccCCCCCchh
Confidence 545 5443 5788999998999888887 778899999999999999998753 5888987633211000
Q ss_pred eccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEE
Q 000736 267 INEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITT 346 (1323)
Q Consensus 267 l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~ 346 (1323)
+ ..+++.|..+-|-..-+.+.+.+.|+ +|||||..+.. ..|.|.+.. .+.++--++++. +
T Consensus 139 ~-~ghtg~Ir~v~wc~eD~~iLSSadd~---tVRLWD~rTgt--~v~sL~~~s-~VtSlEvs~dG~-----------i-- 198 (334)
T KOG0278|consen 139 I-SGHTGGIRTVLWCHEDKCILSSADDK---TVRLWDHRTGT--EVQSLEFNS-PVTSLEVSQDGR-----------I-- 198 (334)
T ss_pred h-cCCCCcceeEEEeccCceEEeeccCC---ceEEEEeccCc--EEEEEecCC-CCcceeeccCCC-----------E--
Confidence 1 12357899999977666666668888 99999998764 345665521 124444444443 2
Q ss_pred EEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCCCC
Q 000736 347 YNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPD 426 (1323)
Q Consensus 347 ~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~ 426 (1323)
+...+|..|+.|+...-.+ .++...+.+|.+.+.+|+. ..+++++.|+.++-||..+..
T Consensus 199 --------------lTia~gssV~Fwdaksf~~-----lKs~k~P~nV~SASL~P~k--~~fVaGged~~~~kfDy~Tge 257 (334)
T KOG0278|consen 199 --------------LTIAYGSSVKFWDAKSFGL-----LKSYKMPCNVESASLHPKK--EFFVAGGEDFKVYKFDYNTGE 257 (334)
T ss_pred --------------EEEecCceeEEeccccccc-----eeeccCccccccccccCCC--ceEEecCcceEEEEEeccCCc
Confidence 2233555555554321110 2344568889999999998 899999999999999998765
Q ss_pred ccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCeeEEEEee
Q 000736 427 MLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGAT 479 (1323)
Q Consensus 427 ~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~ 479 (1323)
.++.. .+++.+.|..+.|+|||.+.|+++.+ .++.+|+..
T Consensus 258 Ei~~~-----------nkgh~gpVhcVrFSPdGE~yAsGSED--GTirlWQt~ 297 (334)
T KOG0278|consen 258 EIGSY-----------NKGHFGPVHCVRFSPDGELYASGSED--GTIRLWQTT 297 (334)
T ss_pred eeeec-----------ccCCCCceEEEEECCCCceeeccCCC--ceEEEEEec
Confidence 44221 13466789999999999999998876 689999875
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.2e-11 Score=139.00 Aligned_cols=367 Identities=16% Similarity=0.162 Sum_probs=230.3
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEE-ecCCC-EEEEEeC-CCc
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDY-LMEKE-ALIVGTS-SGL 98 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~-spdg~-~La~as~-dG~ 98 (1323)
.+....++..+..+...+.++.+..|+.. .... .+.. +... ....+..+.+ ++++. .++..+. |+.
T Consensus 67 ~i~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~--~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 135 (466)
T COG2319 67 SITSIAFSPDGELLLSGSSDGTIKLWDLD--NGEK--LIKS----LEGL---HDSSVSKLALSSPDGNSILLASSSLDGT 135 (466)
T ss_pred eEEEEEECCCCcEEEEecCCCcEEEEEcC--CCce--eEEE----Eecc---CCCceeeEEEECCCcceEEeccCCCCcc
Confidence 67778899999999999988889999983 3320 1111 1111 0135777777 88888 5555444 999
Q ss_pred EEEEeCCC--CeEEEeceecCcEEEEEEcCCCCeEEEEeC-CccEEEEeecC-ceeeeeeecccCCCceeccCccccCCC
Q 000736 99 LLLHSVDG--NATEVVGRVEGGVRFISPSPDGDLLGVTTG-FGQILVMTHDW-DLLYENPLEELAEGFDVHEPELSSSFS 174 (1323)
Q Consensus 99 I~lw~~~~--~~~e~vg~~~~~I~~~awSPDG~~LA~~s~-d~tV~l~t~~~-d~~~e~~l~~~~~~~~Vs~tqf~~~~~ 174 (1323)
+.+|+..+ ........|...|.+++|+|+++.+++++. |+++.+|+... ..+... .+|..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~ 199 (466)
T COG2319 136 VKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTL----------------AGHTD 199 (466)
T ss_pred EEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEee----------------ccCCC
Confidence 99999986 444455556889999999999999999986 99999986432 111111 13556
Q ss_pred CeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceee-eeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEE
Q 000736 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA-SSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV 253 (1323)
Q Consensus 175 ~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~-t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~ 253 (1323)
.+..++|+|+|.+++ ++. ..+++|++||...|.... ....|.... ...|+|+|..+++++.+ ..+.
T Consensus 200 ~v~~~~~~~~~~~~~-~~~-----~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d------~~~~ 266 (466)
T COG2319 200 PVSSLAFSPDGGLLI-ASG-----SSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSD------GTIR 266 (466)
T ss_pred ceEEEEEcCCcceEE-EEe-----cCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCC------CcEE
Confidence 789999999998444 231 236899999986788877 566666654 33899999888888775 4699
Q ss_pred EEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCc
Q 000736 254 FYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPL 333 (1323)
Q Consensus 254 ~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~ 333 (1323)
+|+..........+ ..+...|.++.|+|++..+++++.|+ .+++|+..+...........+......+.| +....
T Consensus 267 ~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 341 (466)
T COG2319 267 LWDLRSSSSLLRTL-SGHSSSVLSVAFSPDGKLLASGSSDG---TVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPDGS 341 (466)
T ss_pred EeeecCCCcEEEEE-ecCCccEEEEEECCCCCEEEEeeCCC---cEEEEEcCCCceEEEeeecccCCceEEEEE-CCCCC
Confidence 99865433311222 22356899999999999999988776 699998775432111010111111244555 31111
Q ss_pred EEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEEC
Q 000736 334 QLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILS 413 (1323)
Q Consensus 334 ~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~ 413 (1323)
.+..... .| ..+.+|++.... ..........+..+.|++ . .........
T Consensus 342 ~~~~~~~-----------------------~d-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~ 390 (466)
T COG2319 342 LLVSGGS-----------------------DD-GTIRLWDLRTGK-----PLKTLEGHSNVLSVSFSP-D-GRVVSSGST 390 (466)
T ss_pred EEEEeec-----------------------CC-CcEEeeecCCCc-----eeEEecCCceEEEEEECC-C-CCEEEEecC
Confidence 1222210 11 223333333221 111122223378899988 6 455666889
Q ss_pred CCcEEEEECCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCeeEEEEe
Q 000736 414 DGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1323)
Q Consensus 414 Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1323)
++.+.+|+............ ....+....+++++..++.+..+ +.+.+|..
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 441 (466)
T COG2319 391 DGTVRLWDLSTGSLLRNLDG------------HTSRVTSLDFSPDGKSLASGSSD--NTIRLWDL 441 (466)
T ss_pred CCceEEEecccCeeeeeccC------------CCCcEEEEEECCCCcEEEEecCC--CcEEEEec
Confidence 99999999976432211110 00467888889999887764332 45555554
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-12 Score=153.52 Aligned_cols=384 Identities=12% Similarity=0.086 Sum_probs=238.6
Q ss_pred eeecCCCEEEEEeCCCcEEEEecccccccccceeeccc------cccc---c---c--cCCC--CCCEEEEEEecCCCEE
Q 000736 27 ALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAIS------AEIE---H---I--DLEP--GDSITAFDYLMEKEAL 90 (1323)
Q Consensus 27 ~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~------~~~~---~---~--~~~~--~~~V~~v~~spdg~~L 90 (1323)
++-..++.|++++.++.|..+++. +-+- ..+|| ++.. . . ...| -.--+++.|.|..+.|
T Consensus 265 CIcVs~r~I~cgCa~g~vrlFnp~--tL~y---~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~kl 339 (1080)
T KOG1408|consen 265 CICVSSRLIACGCAKGMVRLFNPE--TLDY---AGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKL 339 (1080)
T ss_pred eeeeecceEEEeeccceeeecCcc--hhhh---ccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceE
Confidence 444567889999999978787773 2221 33343 1110 0 0 0001 1234688999999999
Q ss_pred EEEeCCCcEEEEeCCC----CeEEEeceecCcEEEEEEcC------C-----CCeEEEEeCCccEEEEeecC----ceee
Q 000736 91 IVGTSSGLLLLHSVDG----NATEVVGRVEGGVRFISPSP------D-----GDLLGVTTGFGQILVMTHDW----DLLY 151 (1323)
Q Consensus 91 a~as~dG~I~lw~~~~----~~~e~vg~~~~~I~~~awSP------D-----G~~LA~~s~d~tV~l~t~~~----d~~~ 151 (1323)
.....|..+.+||++. +++...-.|...||.+.-=| . ..-+.+++.|+||++|+..+ ++..
T Consensus 340 scVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyr 419 (1080)
T KOG1408|consen 340 SCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYR 419 (1080)
T ss_pred EEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceee
Confidence 9999999999999975 34443334677777765544 1 13478899999999998766 2211
Q ss_pred eeeecccCCCceec---cCccc----------------cCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCC
Q 000736 152 ENPLEELAEGFDVH---EPELS----------------SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG 212 (1323)
Q Consensus 152 e~~l~~~~~~~~Vs---~tqf~----------------~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G 212 (1323)
.-.+..+ -.+.+. ++||. +...++.+|+-||||++|| ++. .-+.+|||+..+-
T Consensus 420 RNils~~-l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLA-sGD------r~GnlrVy~Lq~l 491 (1080)
T KOG1408|consen 420 RNILSAN-LSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLA-SGD------RGGNLRVYDLQEL 491 (1080)
T ss_pred cccchhh-hhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceec-ccC------ccCceEEEEehhh
Confidence 1111111 011111 22222 1224789999999999999 652 3479999999777
Q ss_pred ceeeeeccCCCceeEEEEccC---CCeEEEEecCCCCCCCCeEEEEeC--CCeeEEEEEeccCCCCcEEEEEEccCC--C
Q 000736 213 TLQASSELKAFMGAVLEWMPS---GANIAAVYDRKSENKCPSIVFYER--NGLERSSFDINEQIDSTVELLKWNCMS--D 285 (1323)
Q Consensus 213 ~l~~t~e~~~~~v~slawsPd---G~lIAs~s~d~~~~~~~~V~~~e~--nGl~~~~f~l~~~~~~~V~~laWSpDg--~ 285 (1323)
+.....|.|+.-|-+|.||-- .++|||+++| .-|.+||. |-...+ ++.+ +...|.+|.|-..| .
T Consensus 492 ~~~~~~eAHesEilcLeyS~p~~~~kLLASasrd------RlIHV~Dv~rny~l~q--tld~-HSssITsvKFa~~gln~ 562 (1080)
T KOG1408|consen 492 EYTCFMEAHESEILCLEYSFPVLTNKLLASASRD------RLIHVYDVKRNYDLVQ--TLDG-HSSSITSVKFACNGLNR 562 (1080)
T ss_pred hhhhheecccceeEEEeecCchhhhHhhhhccCC------ceEEEEecccccchhh--hhcc-cccceeEEEEeecCCce
Confidence 777778999999999999753 4689999996 46889984 221111 2222 35689999999888 5
Q ss_pred eeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEe
Q 000736 286 LLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVID 365 (1323)
Q Consensus 286 ~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viD 365 (1323)
.+.+.+.|+ -..+++.. |. .++.. .|.+.+++ +.-..|+. .++|...-++.+..
T Consensus 563 ~MiscGADk----simFr~~q-----k~------~~g~~---f~r~t~t~------~ktTlYDm--~Vdp~~k~v~t~cQ 616 (1080)
T KOG1408|consen 563 KMISCGADK----SIMFRVNQ-----KA------SSGRL---FPRHTQTL------SKTTLYDM--AVDPTSKLVVTVCQ 616 (1080)
T ss_pred EEEeccCch----hhheehhc-----cc------cCcee---cccccccc------ccceEEEe--eeCCCcceEEEEec
Confidence 666667776 22333221 00 00100 01111111 11111221 12233334455555
Q ss_pred CCEEEEeecCCcCCCCCceeeee----cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCCCCccccccCCceeEeee
Q 000736 366 GSKILVTPLSLSLMPPPMYLFSL----KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEAC 441 (1323)
Q Consensus 366 g~~l~lt~l~~~~vPppm~~~~l----~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~ 441 (1323)
+.+|.+.++..+-. .+++ .+.+....|..-|.| .+||+..+|.++.++|+...+|.....||
T Consensus 617 Drnirif~i~sgKq-----~k~FKgs~~~eG~lIKv~lDPSg--iY~atScsdktl~~~Df~sgEcvA~m~GH------- 682 (1080)
T KOG1408|consen 617 DRNIRIFDIESGKQ-----VKSFKGSRDHEGDLIKVILDPSG--IYLATSCSDKTLCFVDFVSGECVAQMTGH------- 682 (1080)
T ss_pred ccceEEEeccccce-----eeeecccccCCCceEEEEECCCc--cEEEEeecCCceEEEEeccchhhhhhcCc-------
Confidence 55666655432211 1122 255677788888999 89999999999999999988887555554
Q ss_pred ccccccCcEEEEEEecCCeEEEEEecCCCCeeEEEEee
Q 000736 442 ISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGAT 479 (1323)
Q Consensus 442 ~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~ 479 (1323)
...|..+-|++|-+.|.+.+.+ .-+.+|.+.
T Consensus 683 -----sE~VTG~kF~nDCkHlISvsgD--gCIFvW~lp 713 (1080)
T KOG1408|consen 683 -----SEAVTGVKFLNDCKHLISVSGD--GCIFVWKLP 713 (1080)
T ss_pred -----chheeeeeecccchhheeecCC--ceEEEEECc
Confidence 3478999999999988877665 467777764
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.4e-13 Score=152.91 Aligned_cols=278 Identities=14% Similarity=0.073 Sum_probs=200.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccc--cc--cccCC-----CCCCEEEEEEecCCCEEEE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAE--IE--HIDLE-----PGDSITAFDYLMEKEALIV 92 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~--~~--~~~~~-----~~~~V~~v~~spdg~~La~ 92 (1323)
++++++..+|...+|++|.++.|.+|+. .++...-.+ ++.+ +. ..++. +...|.+++.||||++||+
T Consensus 144 s~~~vals~d~~~~fsask~g~i~kw~v--~tgk~~~~i--~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 144 SVTSVALSPDDKRVFSASKDGTILKWDV--LTGKKDRYI--IERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred cceEEEeeccccceeecCCCcceeeeeh--hcCcccccc--cccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence 7899999999999999999999999999 666532111 1111 11 11111 2367999999999999999
Q ss_pred EeCCCcEEEEeCCCCe-EEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCcccc
Q 000736 93 GTSSGLLLLHSVDGNA-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSS 171 (1323)
Q Consensus 93 as~dG~I~lw~~~~~~-~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~ 171 (1323)
|..|..|.||+.++.. +..+..|.+.|.+++|=-.-..|-+++.|.+|++|+.+--... ..+.+
T Consensus 220 gg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~v---------------etlyG 284 (479)
T KOG0299|consen 220 GGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYV---------------ETLYG 284 (479)
T ss_pred cCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHH---------------HHHhC
Confidence 9999999999999854 4555667899999999877788999999999999975311111 12347
Q ss_pred CCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCe
Q 000736 172 SFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPS 251 (1323)
Q Consensus 172 ~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~ 251 (1323)
|.+.|..|.-..-++. +|++ +.|+++|+|.. .-+.+-++.++.+.+.+++|=-+- .+++|+++ +.
T Consensus 285 Hqd~v~~IdaL~reR~-vtVG------grDrT~rlwKi-~eesqlifrg~~~sidcv~~In~~-HfvsGSdn------G~ 349 (479)
T KOG0299|consen 285 HQDGVLGIDALSRERC-VTVG------GRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFINDE-HFVSGSDN------GS 349 (479)
T ss_pred Cccceeeechhcccce-EEec------cccceeEEEec-cccceeeeeCCCCCeeeEEEeccc-ceeeccCC------ce
Confidence 7788899987776764 4476 35799999999 666667777888888999987664 46778875 46
Q ss_pred EEEEeCCCeeEEEEEec-------c--C--CCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCC--eeEEEeEEEEe
Q 000736 252 IVFYERNGLERSSFDIN-------E--Q--IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN--HWYLKYEIRYL 318 (1323)
Q Consensus 252 V~~~e~nGl~~~~f~l~-------~--~--~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~--~wylkq~l~~~ 318 (1323)
|.+|..--. .--|+.+ . + +..+|++|+-.|.++++|+++.++ .|+||-+..+ .-.+-+++.+.
T Consensus 350 IaLWs~~KK-kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G---~vrLW~i~~g~r~i~~l~~ls~~ 425 (479)
T KOG0299|consen 350 IALWSLLKK-KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSG---CVRLWKIEDGLRAINLLYSLSLV 425 (479)
T ss_pred EEEeeeccc-CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCC---ceEEEEecCCccccceeeecccc
Confidence 999984211 1112222 1 0 113899999999999999999999 9999999865 12233344331
Q ss_pred cCCcEEEEEccCCCcEEEEEe
Q 000736 319 RRDGIRFMWHPTKPLQLICWT 339 (1323)
Q Consensus 319 ~~~~~~v~Wsp~~~~~L~~~~ 339 (1323)
+-..+++|++++.. +.++.
T Consensus 426 -GfVNsl~f~~sgk~-ivagi 444 (479)
T KOG0299|consen 426 -GFVNSLAFSNSGKR-IVAGI 444 (479)
T ss_pred -cEEEEEEEccCCCE-EEEec
Confidence 12378899998874 44443
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.9e-14 Score=160.07 Aligned_cols=241 Identities=14% Similarity=0.145 Sum_probs=181.2
Q ss_pred ccceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCC-CCCCEEEEEEecCCCEEEEEeCCCc
Q 000736 20 DEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLE-PGDSITAFDYLMEKEALIVGTSSGL 98 (1323)
Q Consensus 20 ~~~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~V~~v~~spdg~~La~as~dG~ 98 (1323)
||.+.+.+|...+..||.+..-+ |..||++ ......-+++|| .+ ++.+|.++..+|||+.|++|++-.+
T Consensus 419 GEvVcAvtIS~~trhVyTgGkgc-VKVWdis--~pg~k~PvsqLd-------cl~rdnyiRSckL~pdgrtLivGGeast 488 (705)
T KOG0639|consen 419 GEVVCAVTISNPTRHVYTGGKGC-VKVWDIS--QPGNKSPVSQLD-------CLNRDNYIRSCKLLPDGRTLIVGGEAST 488 (705)
T ss_pred CcEEEEEEecCCcceeEecCCCe-EEEeecc--CCCCCCcccccc-------ccCcccceeeeEecCCCceEEeccccce
Confidence 55788889999999999998777 9999994 222222344433 22 3678999999999999999999999
Q ss_pred EEEEeCCCCeEE---EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCC
Q 000736 99 LLLHSVDGNATE---VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSF 175 (1323)
Q Consensus 99 I~lw~~~~~~~e---~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1323)
+.|||+..-... .+..-.-.-.+++.|||.++..++..||+|.+|+ ...+.-. .||++|.++
T Consensus 489 lsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwD----Lhnq~~V-----------rqfqGhtDG 553 (705)
T KOG0639|consen 489 LSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWD----LHNQTLV-----------RQFQGHTDG 553 (705)
T ss_pred eeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEE----cccceee-----------ecccCCCCC
Confidence 999999763322 2222123456789999999999999999998875 3222222 468899999
Q ss_pred eEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEE
Q 000736 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1323)
Q Consensus 176 i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~ 255 (1323)
+.+|..++||..|= +++. |++||-||.++|....... ....|.+|..+|.|.++|.|-.. ..|.+.
T Consensus 554 ascIdis~dGtklW-TGGl------DntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMen------s~vevl 619 (705)
T KOG0639|consen 554 ASCIDISKDGTKLW-TGGL------DNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMEN------SNVEVL 619 (705)
T ss_pred ceeEEecCCCceee-cCCC------ccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeeccc------CcEEEE
Confidence 99999999999888 6644 6899999988887554321 23457899999999999999764 346666
Q ss_pred eCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee
Q 000736 256 ERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1323)
Q Consensus 256 e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~ 305 (1323)
..+|....+ +.. ++.-|.+|.|++-|+.+++.+.|. -+-.|.+-
T Consensus 620 h~skp~kyq--lhl-heScVLSlKFa~cGkwfvStGkDn---lLnawrtP 663 (705)
T KOG0639|consen 620 HTSKPEKYQ--LHL-HESCVLSLKFAYCGKWFVSTGKDN---LLNAWRTP 663 (705)
T ss_pred ecCCcccee--ecc-cccEEEEEEecccCceeeecCchh---hhhhccCc
Confidence 666544433 332 367899999999999999999887 67777764
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.9e-13 Score=165.35 Aligned_cols=203 Identities=16% Similarity=0.109 Sum_probs=135.9
Q ss_pred CCEEEEEEecCCCEEEEEeC---CCcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEE-eCCcc--EEEEeecCce
Q 000736 76 DSITAFDYLMEKEALIVGTS---SGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVT-TGFGQ--ILVMTHDWDL 149 (1323)
Q Consensus 76 ~~V~~v~~spdg~~La~as~---dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~-s~d~t--V~l~t~~~d~ 149 (1323)
..+.+..|||||+.|+.++. ++.|.+||+.+++...+..+.+.+.+.+|||||+.||.. +.++. |.+|+.....
T Consensus 202 ~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~ 281 (435)
T PRK05137 202 SLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT 281 (435)
T ss_pred CCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc
Confidence 57899999999999998764 467999999988777666667778899999999988755 45555 4444322111
Q ss_pred eeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEE
Q 000736 150 LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLE 229 (1323)
Q Consensus 150 ~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~sla 229 (1323)
. ..+. .+.......+|+|||+++++++.. .+...|.+||..+|....... ..+.....+
T Consensus 282 ~--~~Lt--------------~~~~~~~~~~~spDG~~i~f~s~~----~g~~~Iy~~d~~g~~~~~lt~-~~~~~~~~~ 340 (435)
T PRK05137 282 T--TRLT--------------DSPAIDTSPSYSPDGSQIVFESDR----SGSPQLYVMNADGSNPRRISF-GGGRYSTPV 340 (435)
T ss_pred e--EEcc--------------CCCCccCceeEcCCCCEEEEEECC----CCCCeEEEEECCCCCeEEeec-CCCcccCeE
Confidence 1 1111 111233568999999999844422 234678999986665555443 244456789
Q ss_pred EccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCC---CeEEEEEeeC
Q 000736 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEY---DSVKICFFSN 306 (1323)
Q Consensus 230 wsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~---~~V~LW~~~n 306 (1323)
|||||+.||..+.+.+ ...|.+|+.+|..... +.. ...+.+++|||||+.|+..+.+... ..+.+.++.+
T Consensus 341 ~SpdG~~ia~~~~~~~---~~~i~~~d~~~~~~~~--lt~--~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 341 WSPRGDLIAFTKQGGG---QFSIGVMKPDGSGERI--LTS--GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred ECCCCCEEEEEEcCCC---ceEEEEEECCCCceEe--ccC--CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 9999999998876432 3578888876543332 221 2246789999999999987765422 2355555544
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.9e-13 Score=160.47 Aligned_cols=255 Identities=14% Similarity=0.073 Sum_probs=190.2
Q ss_pred CCEEEEEeCCCcEEEEecccccccccceeeccccccccccCC-CCCCEEE-EEEec-CCCEEEEEeCCCcEEEEeCCCCe
Q 000736 32 QNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLE-PGDSITA-FDYLM-EKEALIVGTSSGLLLLHSVDGNA 108 (1323)
Q Consensus 32 ~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~V~~-v~~sp-dg~~La~as~dG~I~lw~~~~~~ 108 (1323)
+..+.++|.|+.+..|+. ..++ + +..+.+. |.+.|.. +.|.+ |+-.|++|+.|++|.+|.+.+..
T Consensus 25 ~~~i~s~sRd~t~~vw~~--~~~~--~--------l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~ 92 (745)
T KOG0301|consen 25 GVCIISGSRDGTVKVWAK--KGKQ--Y--------LETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAE 92 (745)
T ss_pred CeEEeecCCCCceeeeec--cCcc--c--------ccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCC
Confidence 335777787888989987 2222 1 2223333 3455655 88885 66679999999999999998854
Q ss_pred -EEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcE
Q 000736 109 -TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKY 187 (1323)
Q Consensus 109 -~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~ 187 (1323)
+.++-.|+..|.|++.--|+. |+++|.|.|+++|. ..+..... ++|...|+.+..-|++.|
T Consensus 93 P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~-~~~l~~~l----------------~gH~asVWAv~~l~e~~~ 154 (745)
T KOG0301|consen 93 PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWR-IGELVYSL----------------QGHTASVWAVASLPENTY 154 (745)
T ss_pred chhhhhccccceeeeecCCcCc-eEecccccceEEec-chhhhccc----------------CCcchheeeeeecCCCcE
Confidence 345555799999999988887 99999999999994 33443332 266778999999999955
Q ss_pred EEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEe
Q 000736 188 FATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDI 267 (1323)
Q Consensus 188 lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l 267 (1323)
+ +++ .|++||+|.- |++..++.+|..-|..++.-|++.+ +|++.| ..|++|+..|....+.
T Consensus 155 v--Tgs------aDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~f-lScsND------g~Ir~w~~~ge~l~~~-- 215 (745)
T KOG0301|consen 155 V--TGS------ADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHF-LSCSND------GSIRLWDLDGEVLLEM-- 215 (745)
T ss_pred E--ecc------CcceeeeccC--CchhhhhccchhheeeeEEecCCCe-EeecCC------ceEEEEeccCceeeee--
Confidence 4 454 3699999986 8899999999999999999999775 456654 5699999877543321
Q ss_pred ccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEE
Q 000736 268 NEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQIT 345 (1323)
Q Consensus 268 ~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~ 345 (1323)
.+ ++..|++++-.+++..++++++|+ +++||... -+.|.|..+..+.+++..=+.+. +++++.||.+.
T Consensus 216 ~g-htn~vYsis~~~~~~~Ivs~gEDr---tlriW~~~----e~~q~I~lPttsiWsa~~L~NgD--Ivvg~SDG~Vr 283 (745)
T KOG0301|consen 216 HG-HTNFVYSISMALSDGLIVSTGEDR---TLRIWKKD----ECVQVITLPTTSIWSAKVLLNGD--IVVGGSDGRVR 283 (745)
T ss_pred ec-cceEEEEEEecCCCCeEEEecCCc---eEEEeecC----ceEEEEecCccceEEEEEeeCCC--EEEeccCceEE
Confidence 12 367899999889999999999999 99999987 36788887655555544444444 67777788664
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3e-13 Score=148.06 Aligned_cols=285 Identities=17% Similarity=0.140 Sum_probs=178.8
Q ss_pred EEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccc-cCCCCeEEEEEe-------cCCcEEEE
Q 000736 119 VRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELS-SSFSFKSPISWR-------GDGKYFAT 190 (1323)
Q Consensus 119 I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~-~~~~~i~~isWs-------pDG~~lAt 190 (1323)
.....|||||..|.+-+.|+.+.+|+.-++......-....-.++.+ .+ .....|...+|- |+..++|
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~---~r~~eg~tvydy~wYs~M~s~qP~t~l~a- 127 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLS---YRYQEGETVYDYCWYSRMKSDQPSTNLFA- 127 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCcccccccee---EEeccCCEEEEEEeeeccccCCCccceee-
Confidence 44568999999999999999999987655544332100000000000 00 122456888997 8888999
Q ss_pred eeccccccCCCCEEEEEECCCCceeeeeccCCCc-----eeEEEEccCCCeEEEEecCCCCCCCCeEEEEeC--CCeeEE
Q 000736 191 LSEFCNSSKLHKRLKVWERDSGTLQASSELKAFM-----GAVLEWMPSGANIAAVYDRKSENKCPSIVFYER--NGLERS 263 (1323)
Q Consensus 191 vss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~-----v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~--nGl~~~ 263 (1323)
+++ .+.-|++||..+|++.......+.. -.+|+|+|||..|.+|- +..|++|+. -|..-.
T Consensus 128 ~ss------r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-------krcirvFdt~RpGr~c~ 194 (406)
T KOG2919|consen 128 VSS------RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-------KRCIRVFDTSRPGRDCP 194 (406)
T ss_pred ecc------ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-------cceEEEeeccCCCCCCc
Confidence 664 3578999999999998876654432 37999999999998774 367999984 342211
Q ss_pred EEEeccC----CCCcEEEEEEcc-CCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEE
Q 000736 264 SFDINEQ----IDSTVELLKWNC-MSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICW 338 (1323)
Q Consensus 264 ~f~l~~~----~~~~V~~laWSp-Dg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~ 338 (1323)
.++...+ ..+-+..++||| |++.||+++... .+-|+...+... -+.+-.+.+..+.+.|+++|.. |.++
T Consensus 195 vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q---~~giy~~~~~~p--l~llggh~gGvThL~~~edGn~-lfsG 268 (406)
T KOG2919|consen 195 VYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQ---RVGIYNDDGRRP--LQLLGGHGGGVTHLQWCEDGNK-LFSG 268 (406)
T ss_pred chhhhhcccccccceeeeeeccCCCCcceeeecccc---eeeeEecCCCCc--eeeecccCCCeeeEEeccCcCe-eccc
Confidence 1111111 124577899999 567999999877 677776655432 2333333333388999998874 4443
Q ss_pred ecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeec-CCC-CEEEEEE--ecCCCCCEEEEEECC
Q 000736 339 TLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLK-FPT-AVTEMAF--YSKSSKNCLAAILSD 414 (1323)
Q Consensus 339 ~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~-~~~-~V~~VaF--Spdg~~~~LAs~s~D 414 (1323)
.. -...|+.|++|...-| .+.|+ |-+ .-..|-| -|+| +.||+++.|
T Consensus 269 aR------------------------k~dkIl~WDiR~~~~p----v~~L~rhv~~TNQRI~FDld~~~--~~LasG~td 318 (406)
T KOG2919|consen 269 AR------------------------KDDKILCWDIRYSRDP----VYALERHVGDTNQRILFDLDPKG--EILASGDTD 318 (406)
T ss_pred cc------------------------CCCeEEEEeehhccch----hhhhhhhccCccceEEEecCCCC--ceeeccCCC
Confidence 31 1235666776643221 12332 222 2223334 3666 999999999
Q ss_pred CcEEEEECCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEec
Q 000736 415 GCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHH 467 (1323)
Q Consensus 415 gti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~ 467 (1323)
|.|++|++.+...+ ..+. ....+.+..+++.|-=.++|+++.
T Consensus 319 G~V~vwdlk~~gn~-------~sv~----~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 319 GSVRVWDLKDLGNE-------VSVT----GNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred ccEEEEecCCCCCc-------cccc----ccccccccceecCcccceeeeccC
Confidence 99999999863221 1100 123457888888888778887765
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.9e-13 Score=146.28 Aligned_cols=241 Identities=17% Similarity=0.165 Sum_probs=167.5
Q ss_pred eceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCc--EEE
Q 000736 112 VGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGK--YFA 189 (1323)
Q Consensus 112 vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~--~lA 189 (1323)
...|.+.|+|+|-| |.++|+||.|.+|.+++ ......+.... .|.+.++++.|.|+-. .|.
T Consensus 39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYD----m~k~~qlg~ll-----------~HagsitaL~F~~~~S~shLl 101 (362)
T KOG0294|consen 39 FSAHAGSITALAVS--GPYVASGSSDETIHIYD----MRKRKQLGILL-----------SHAGSITALKFYPPLSKSHLL 101 (362)
T ss_pred ccccccceeEEEec--ceeEeccCCCCcEEEEe----ccchhhhccee-----------ccccceEEEEecCCcchhhee
Confidence 44678999999986 89999999999998854 32323222211 4567889999999984 555
Q ss_pred EeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEec
Q 000736 190 TLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDIN 268 (1323)
Q Consensus 190 tvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~ 268 (1323)
+++ .|+.|-+|+...-++..++.+|.+.|+.|+.+|+|++-.+.+.| +.++.|+. +|. +-|.++
T Consensus 102 -S~s------dDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D------~~lr~WNLV~Gr--~a~v~~ 166 (362)
T KOG0294|consen 102 -SGS------DDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGD------QVLRTWNLVRGR--VAFVLN 166 (362)
T ss_pred -eec------CCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCC------ceeeeehhhcCc--cceeec
Confidence 343 36899999998888999999999999999999999998888876 57999994 442 345665
Q ss_pred cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEE
Q 000736 269 EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYN 348 (1323)
Q Consensus 269 ~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~ 348 (1323)
.... -..|.|+|.|+.+++.+.++ |-+|.+.+-+-. .++..+ ....++.|...+ .|.++.
T Consensus 167 L~~~--at~v~w~~~Gd~F~v~~~~~----i~i~q~d~A~v~--~~i~~~-~r~l~~~~l~~~--~L~vG~--------- 226 (362)
T KOG0294|consen 167 LKNK--ATLVSWSPQGDHFVVSGRNK----IDIYQLDNASVF--REIENP-KRILCATFLDGS--ELLVGG--------- 226 (362)
T ss_pred cCCc--ceeeEEcCCCCEEEEEeccE----EEEEecccHhHh--hhhhcc-ccceeeeecCCc--eEEEec---------
Confidence 3322 33599999999999999997 999999875421 122221 111333343222 122222
Q ss_pred EEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCC
Q 000736 349 FIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1323)
Q Consensus 349 ~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~ 424 (1323)
|...+++++-.. ..| .+. -+.|+..|.+++|.-+....+|+++++||.|++|+.+.
T Consensus 227 ----------------d~~~i~~~D~ds-~~~--~~~-~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 227 ----------------DNEWISLKDTDS-DTP--LTE-FLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred ----------------CCceEEEeccCC-Ccc--cee-eecchhheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence 333344443322 122 221 24799999999976554348999999999999999974
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.9e-13 Score=160.54 Aligned_cols=225 Identities=13% Similarity=0.084 Sum_probs=136.3
Q ss_pred CCEEEEEEecCCCEEEEEeCC---CcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEE-eCCccEEEEeecCceee
Q 000736 76 DSITAFDYLMEKEALIVGTSS---GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVT-TGFGQILVMTHDWDLLY 151 (1323)
Q Consensus 76 ~~V~~v~~spdg~~La~as~d---G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~-s~d~tV~l~t~~~d~~~ 151 (1323)
+.+.+.+|||||+.|+.++.. ..|.+||+.+++...+....+.+.+.+|||||+.||.+ +.+|...+|..+-+.-.
T Consensus 196 ~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~ 275 (427)
T PRK02889 196 EPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG 275 (427)
T ss_pred CCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 568899999999999987743 35999999988766554446677899999999999864 66777666643211100
Q ss_pred eeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEc
Q 000736 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM 231 (1323)
Q Consensus 152 e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slaws 231 (1323)
...+. .+.......+|+|||++|++++.. .+.-.|.+.+..+|....... ..+.....+||
T Consensus 276 ~~~lt--------------~~~~~~~~~~wSpDG~~l~f~s~~----~g~~~Iy~~~~~~g~~~~lt~-~g~~~~~~~~S 336 (427)
T PRK02889 276 LRRLT--------------QSSGIDTEPFFSPDGRSIYFTSDR----GGAPQIYRMPASGGAAQRVTF-TGSYNTSPRIS 336 (427)
T ss_pred cEECC--------------CCCCCCcCeEEcCCCCEEEEEecC----CCCcEEEEEECCCCceEEEec-CCCCcCceEEC
Confidence 11111 111233568899999999844421 122344444554555443322 12233568999
Q ss_pred cCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEE
Q 000736 232 PSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYL 311 (1323)
Q Consensus 232 PdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wyl 311 (1323)
|||+.||.++.... ...|.+|+.++..... +.. .......+|||||+.|+..+.++....+.+-+.... .
T Consensus 337 pDG~~Ia~~s~~~g---~~~I~v~d~~~g~~~~--lt~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~---~ 406 (427)
T PRK02889 337 PDGKLLAYISRVGG---AFKLYVQDLATGQVTA--LTD--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGR---I 406 (427)
T ss_pred CCCCEEEEEEccCC---cEEEEEEECCCCCeEE--ccC--CCCccCceECCCCCEEEEEEecCCCEEEEEEECCCC---c
Confidence 99999998876432 3468889865433222 211 123467899999999999887663323333333221 1
Q ss_pred EeEEEEecCCcEEEEEcc
Q 000736 312 KYEIRYLRRDGIRFMWHP 329 (1323)
Q Consensus 312 kq~l~~~~~~~~~v~Wsp 329 (1323)
.+.+..+..+.....|+|
T Consensus 407 ~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 407 KQRLSVQGGDVREPSWGP 424 (427)
T ss_pred eEEeecCCCCCCCCccCC
Confidence 223332222234557776
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.9e-13 Score=147.57 Aligned_cols=240 Identities=14% Similarity=0.099 Sum_probs=166.0
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeE-EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe-ecCceeeeee
Q 000736 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENP 154 (1323)
Q Consensus 77 ~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t-~~~d~~~e~~ 154 (1323)
.-.++.|++-|..||+|..||.|.|||..|..+ ..++.|-..|.+++|||||+.|.++|.|..|++|+ ..++++.++.
T Consensus 25 ~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 25 LAECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred ccceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 378999999999999999999999999999665 37788889999999999999999999999999987 4555555443
Q ss_pred ec---------ccCCCceec--------cCccc-------cC-CC-----CeEEEEEecCCcEEEEeeccccccCCCCEE
Q 000736 155 LE---------ELAEGFDVH--------EPELS-------SS-FS-----FKSPISWRGDGKYFATLSEFCNSSKLHKRL 204 (1323)
Q Consensus 155 l~---------~~~~~~~Vs--------~tqf~-------~~-~~-----~i~~isWspDG~~lAtvss~d~~~~~d~~I 204 (1323)
+. +....+.|- -.+|. +. ++ ...+..|.+-|+|+. +| ++.|.+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIi-tG------tsKGkl 177 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYII-TG------TSKGKL 177 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEE-Ee------cCcceE
Confidence 32 221111110 00111 00 00 112234778888988 66 345899
Q ss_pred EEEECCCCceeeeeccCC-CceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeE----EEEEeccCCCC-----c
Q 000736 205 KVWERDSGTLQASSELKA-FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLER----SSFDINEQIDS-----T 274 (1323)
Q Consensus 205 rVWd~~~G~l~~t~e~~~-~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~----~~f~l~~~~~~-----~ 274 (1323)
-|++.++-++.+.+.-.. ..+.+|-++-.|+.++.-+.| ..|+.+|.....+ ++....-.-.. .
T Consensus 178 lv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsD------RvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~ 251 (405)
T KOG1273|consen 178 LVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSD------RVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQ 251 (405)
T ss_pred EEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCC------ceEEEEehhhhcccCccCCcChhHHHHHHHhhhh
Confidence 999998888888766444 567899999999999988775 4688888532211 12111000011 1
Q ss_pred EEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCc-EEEEEccCCCc
Q 000736 275 VELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPL 333 (1323)
Q Consensus 275 V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~~~~ 333 (1323)
-..+.||.||.++..++. ..|.+.||..+.+. |.+.+.+..++- ..+.|||-.|.
T Consensus 252 Wk~ccfs~dgeYv~a~s~--~aHaLYIWE~~~Gs--LVKILhG~kgE~l~DV~whp~rp~ 307 (405)
T KOG1273|consen 252 WKKCCFSGDGEYVCAGSA--RAHALYIWEKSIGS--LVKILHGTKGEELLDVNWHPVRPI 307 (405)
T ss_pred hhheeecCCccEEEeccc--cceeEEEEecCCcc--eeeeecCCchhheeecccccceee
Confidence 346778899999988884 35789999987653 455665544344 77899998875
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-12 Score=142.23 Aligned_cols=264 Identities=17% Similarity=0.250 Sum_probs=174.1
Q ss_pred ecCcEEEEEEcCCCCeEEEEeCCccEEEEe-ec----CceeeeeeecccCCCceeccCccccCCCCeEEEEEecC--CcE
Q 000736 115 VEGGVRFISPSPDGDLLGVTTGFGQILVMT-HD----WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD--GKY 187 (1323)
Q Consensus 115 ~~~~I~~~awSPDG~~LA~~s~d~tV~l~t-~~----~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspD--G~~ 187 (1323)
|.+=|.++.|.+-|+.+|+++.|++|++|+ .+ |... ..++.|++.|+.|.|-+- |+.
T Consensus 12 h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~T----------------s~Wrah~~Si~rV~WAhPEfGqv 75 (361)
T KOG2445|consen 12 HKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCT----------------SSWRAHDGSIWRVVWAHPEFGQV 75 (361)
T ss_pred CcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEe----------------eeEEecCCcEEEEEecCccccce
Confidence 467799999999999999999999999996 21 2211 124467889999999764 899
Q ss_pred EEEeeccccccCCCCEEEEEECCCC---------ceeeeeccCCCceeEEEEccC--CCeEEEEecCCCCCCCCeEEEEe
Q 000736 188 FATLSEFCNSSKLHKRLKVWERDSG---------TLQASSELKAFMGAVLEWMPS--GANIAAVYDRKSENKCPSIVFYE 256 (1323)
Q Consensus 188 lAtvss~d~~~~~d~~IrVWd~~~G---------~l~~t~e~~~~~v~slawsPd--G~lIAs~s~d~~~~~~~~V~~~e 256 (1323)
+|+++ . ||+++||.-..- ....++....+.|.+|.|.|. |-.+|+++.| +.|++||
T Consensus 76 vA~cS-~------Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aD------G~lRIYE 142 (361)
T KOG2445|consen 76 VATCS-Y------DRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASAD------GILRIYE 142 (361)
T ss_pred EEEEe-c------CCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccC------cEEEEEe
Confidence 99554 3 599999976211 122233445567899999996 7789999986 4699998
Q ss_pred C-CCeeEEEEEec----------cCCCCcEEEEEEccC---CCeeEEEEccCC--CCeEEEEEeeCC--eeEEEeEEEEe
Q 000736 257 R-NGLERSSFDIN----------EQIDSTVELLKWNCM---SDLLAAVVRFEE--YDSVKICFFSNN--HWYLKYEIRYL 318 (1323)
Q Consensus 257 ~-nGl~~~~f~l~----------~~~~~~V~~laWSpD---g~~LA~~~~d~~--~~~V~LW~~~n~--~wylkq~l~~~ 318 (1323)
. +-....+++|. +.......+|.|+|. ...||+|+.+.. -+.++||..+.. +|....++..+
T Consensus 143 A~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~ 222 (361)
T KOG2445|consen 143 APDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDH 222 (361)
T ss_pred cCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCC
Confidence 3 22112222221 112345789999974 458999988732 226999998743 46555566643
Q ss_pred cCCc-EEEEEccCCCc---EEEEEecCCcEEEEEEEEeeeeCCCeeE--EEEeCCEEEEeecCCcCCCCCceeeee-cCC
Q 000736 319 RRDG-IRFMWHPTKPL---QLICWTLDGQITTYNFIWTTAVMENSTA--LVIDGSKILVTPLSLSLMPPPMYLFSL-KFP 391 (1323)
Q Consensus 319 ~~~~-~~v~Wsp~~~~---~L~~~~~~g~~~~~~~~~~~~~~d~~~v--~viDg~~l~lt~l~~~~vPppm~~~~l-~~~ 391 (1323)
.++ ..++|.|.-+. .|++.+.|| +.+ |.+.+.-..+. -+.++. .+++|.... ..++ .|.
T Consensus 223 -~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I----~~v~~~~s~i~~ee~~~~~--~~~~l~v~~------vs~~~~H~ 288 (361)
T KOG2445|consen 223 -TDPIRDISWAPNIGRSYHLLAVATKDG-VRI----FKVKVARSAIEEEEVLAPD--LMTDLPVEK------VSELDDHN 288 (361)
T ss_pred -CCcceeeeeccccCCceeeEEEeecCc-EEE----EEEeeccchhhhhcccCCC--CccccceEE------eeeccCCC
Confidence 344 89999998763 577888888 543 33321000000 000000 111221110 1123 388
Q ss_pred CCEEEEEEecCCCCCEEEEEECCCcEEEEECC
Q 000736 392 TAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1323)
Q Consensus 392 ~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~ 423 (1323)
+.|+.|.|.-.| .+|++.+.||+|++|+..
T Consensus 289 ~~VWrv~wNmtG--tiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 289 GEVWRVRWNMTG--TILSSTGDDGCVRLWKAN 318 (361)
T ss_pred CceEEEEEeeee--eEEeecCCCceeeehhhh
Confidence 899999999999 899999999999999875
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-12 Score=141.53 Aligned_cols=310 Identities=12% Similarity=0.086 Sum_probs=192.8
Q ss_pred ceeEEeee-cCCCEEEEEeCCCcEEEEecccccccccce-eec-cccccccccCCCCCCEEEEEEec-CCCEEEEEeCCC
Q 000736 22 ILQFSALD-IEQNRLFFASSANNIYSAQLSSFQNERASI-KTA-ISAEIEHIDLEPGDSITAFDYLM-EKEALIVGTSSG 97 (1323)
Q Consensus 22 ~~~~~~~d-~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~-~~~-l~~~~~~~~~~~~~~V~~v~~sp-dg~~La~as~dG 97 (1323)
.+..+.+| .++..+.++..|+.|..||+...+...... |.+ +-.--+.|+-...-.|.++.|-| |.-++.++|-|.
T Consensus 45 svNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDh 124 (397)
T KOG4283|consen 45 SVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDH 124 (397)
T ss_pred ccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccc
Confidence 78888998 467778888889999999994211100000 000 00000112211134699999999 667888999999
Q ss_pred cEEEEeCCCCeEEEeceecCcEEEEEEcCCC---CeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCC
Q 000736 98 LLLLHSVDGNATEVVGRVEGGVRFISPSPDG---DLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1323)
Q Consensus 98 ~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG---~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~ 174 (1323)
++++||.+|-+.-..=..++.|.+-+|||=. .++|+|+.+-+|++- |..++..-|.. ++|.+
T Consensus 125 tlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLC----Di~SGs~sH~L-----------sGHr~ 189 (397)
T KOG4283|consen 125 TLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLC----DIASGSFSHTL-----------SGHRD 189 (397)
T ss_pred eEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEE----eccCCcceeee-----------ccccC
Confidence 9999999986654444467889999999964 478888888888663 44444443433 37889
Q ss_pred CeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCC-ceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEE
Q 000736 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG-TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV 253 (1323)
Q Consensus 175 ~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G-~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~ 253 (1323)
.|..+.|+|-..|+..+++ .|+.||+||.+.. -+..++..|.
T Consensus 190 ~vlaV~Wsp~~e~vLatgs------aDg~irlWDiRrasgcf~~lD~hn------------------------------- 232 (397)
T KOG4283|consen 190 GVLAVEWSPSSEWVLATGS------ADGAIRLWDIRRASGCFRVLDQHN------------------------------- 232 (397)
T ss_pred ceEEEEeccCceeEEEecC------CCceEEEEEeecccceeEEeeccc-------------------------------
Confidence 9999999999998764654 3689999997221 1222222111
Q ss_pred EEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCc
Q 000736 254 FYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPL 333 (1323)
Q Consensus 254 ~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~ 333 (1323)
|.+......+..+.+.|+.++|++||.+|++.+.|. .+++|+..++.-.++..-....+....+.++
T Consensus 233 -----~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~---r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~----- 299 (397)
T KOG4283|consen 233 -----TKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD---RIRVWNMESGRNTLREFGPIIHNQTTSFAVH----- 299 (397)
T ss_pred -----CccCccccccccccceeeeeeecccchhhhhccCcc---ceEEeecccCcccccccccccccccccceEE-----
Confidence 111000000112346799999999999999998877 7999999876544432221111111222222
Q ss_pred EEEEEecCCcEEEEEEEEeeeeCCCee--EEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEE
Q 000736 334 QLICWTLDGQITTYNFIWTTAVMENST--ALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAI 411 (1323)
Q Consensus 334 ~L~~~~~~g~~~~~~~~~~~~~~d~~~--v~viDg~~l~lt~l~~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~ 411 (1323)
+-+.+-.+ |+. -|.+.++ ..+-.|..|.+|+. |-..|++-+|.|+- +..-++
T Consensus 300 ---~~~~~s~v----fv~--~p~~~~lall~~~sgs~ir~l~~---------------h~k~i~c~~~~~~f--q~~~tg 353 (397)
T KOG4283|consen 300 ---IQSMDSDV----FVL--FPNDGSLALLNLLEGSFVRRLST---------------HLKRINCAAYRPDF--EQCFTG 353 (397)
T ss_pred ---Eeecccce----EEE--EecCCeEEEEEccCceEEEeeec---------------ccceeeEEeecCch--hhhhcc
Confidence 11111111 111 1333332 23446666665543 34568888999998 788899
Q ss_pred ECCCcEEEEEC
Q 000736 412 LSDGCLCVVDL 422 (1323)
Q Consensus 412 s~Dgti~lw~~ 422 (1323)
.-|+.|.-|..
T Consensus 354 ~~d~ni~~w~p 364 (397)
T KOG4283|consen 354 DMNGNIYMWSP 364 (397)
T ss_pred ccCCccccccc
Confidence 99999999976
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.5e-13 Score=160.69 Aligned_cols=223 Identities=17% Similarity=0.146 Sum_probs=140.3
Q ss_pred CCEEEEEEecCCCEEEEEeCC---CcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEE-eCCc--cEEEEeecCce
Q 000736 76 DSITAFDYLMEKEALIVGTSS---GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVT-TGFG--QILVMTHDWDL 149 (1323)
Q Consensus 76 ~~V~~v~~spdg~~La~as~d---G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~-s~d~--tV~l~t~~~d~ 149 (1323)
..+.+.+|+|||+.|+.++.. ..|.+||+.+++...+..+.+...+.+|||||+.|+.+ +.+| .|.+|+.....
T Consensus 204 ~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~ 283 (433)
T PRK04922 204 EPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ 283 (433)
T ss_pred CccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC
Confidence 468899999999999988743 46999999987766554445556689999999988765 4555 46666432211
Q ss_pred eeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEE
Q 000736 150 LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLE 229 (1323)
Q Consensus 150 ~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~sla 229 (1323)
+. .+. .+......++|+|||++|++++.. .+...|.++|..+|+...... .......++
T Consensus 284 ~~--~lt--------------~~~~~~~~~~~spDG~~l~f~sd~----~g~~~iy~~dl~~g~~~~lt~-~g~~~~~~~ 342 (433)
T PRK04922 284 LT--RLT--------------NHFGIDTEPTWAPDGKSIYFTSDR----GGRPQIYRVAASGGSAERLTF-QGNYNARAS 342 (433)
T ss_pred eE--ECc--------------cCCCCccceEECCCCCEEEEEECC----CCCceEEEEECCCCCeEEeec-CCCCccCEE
Confidence 11 111 111223578999999999844321 123467778876676544322 223345789
Q ss_pred EccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCee
Q 000736 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1323)
Q Consensus 230 wsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~w 309 (1323)
|||||+.||.++.+.+ ...|.+|+..+..... +. + .....+.+|||||+.|+..+.++....+.+|+..+.
T Consensus 343 ~SpDG~~Ia~~~~~~~---~~~I~v~d~~~g~~~~--Lt-~-~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~-- 413 (433)
T PRK04922 343 VSPDGKKIAMVHGSGG---QYRIAVMDLSTGSVRT--LT-P-GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR-- 413 (433)
T ss_pred ECCCCCEEEEEECCCC---ceeEEEEECCCCCeEE--CC-C-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC--
Confidence 9999999998765422 4578899975433322 22 1 123457899999999998887654445667776542
Q ss_pred EEEeEEEEecCCcEEEEEcc
Q 000736 310 YLKYEIRYLRRDGIRFMWHP 329 (1323)
Q Consensus 310 ylkq~l~~~~~~~~~v~Wsp 329 (1323)
..+.+..+........|+|
T Consensus 414 -~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 414 -VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred -ceEEcccCCCCCCCCccCC
Confidence 1223332222224566776
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.7e-13 Score=144.87 Aligned_cols=360 Identities=14% Similarity=0.127 Sum_probs=203.5
Q ss_pred EEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEe
Q 000736 25 FSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKE-ALIVGTSSGLLLLHS 103 (1323)
Q Consensus 25 ~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~-~La~as~dG~I~lw~ 103 (1323)
..++.++|+-|.+++....++ =|. ++-+ +.+|..- -+.|.-|.|..|+. +||.++.+|.|.+|+
T Consensus 13 ~c~fSp~g~yiAs~~~yrlvi-Rd~--~tlq----~~qlf~c--------ldki~yieW~ads~~ilC~~yk~~~vqvws 77 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVI-RDS--ETLQ----LHQLFLC--------LDKIVYIEWKADSCHILCVAYKDPKVQVWS 77 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEE-ecc--chhh----HHHHHHH--------HHHhhheeeeccceeeeeeeeccceEEEEE
Confidence 467899999999999886333 344 2322 3333322 25789999999986 668889999999999
Q ss_pred CCCCeEEE-eceecCcEEEEEEcCCCCeEEEEeC-CccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEE
Q 000736 104 VDGNATEV-VGRVEGGVRFISPSPDGDLLGVTTG-FGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISW 181 (1323)
Q Consensus 104 ~~~~~~e~-vg~~~~~I~~~awSPDG~~LA~~s~-d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isW 181 (1323)
+...+..+ +..-..|+.+++|||||+.|...|+ +-.|.+|+-.-.. ...+. +. ...+-.++|
T Consensus 78 l~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~--~~~~~---~p-----------K~~~kg~~f 141 (447)
T KOG4497|consen 78 LVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK--GYLLP---HP-----------KTNVKGYAF 141 (447)
T ss_pred eecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce--eEEec---cc-----------ccCceeEEE
Confidence 97654331 2222678999999999966666655 6678888643221 11111 00 123467999
Q ss_pred ecCCcEEEEeeccccccCCCCE--EEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCC
Q 000736 182 RGDGKYFATLSEFCNSSKLHKR--LKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNG 259 (1323)
Q Consensus 182 spDG~~lAtvss~d~~~~~d~~--IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nG 259 (1323)
.|||+|-| +.+. .|+. +.|..-..-+++..+.-..-....|-|||||+.||+=..-- ...|-.||+
T Consensus 142 ~~dg~f~a-i~sR-----rDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~L----eykv~aYe~-- 209 (447)
T KOG4497|consen 142 HPDGQFCA-ILSR-----RDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVL----EYKVYAYER-- 209 (447)
T ss_pred CCCCceee-eeec-----ccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchh----hheeeeeee--
Confidence 99999988 6541 1111 12211101111222221122236789999999998643210 122333443
Q ss_pred eeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEE----EEec---------------C
Q 000736 260 LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEI----RYLR---------------R 320 (1323)
Q Consensus 260 l~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l----~~~~---------------~ 320 (1323)
.-.+..++|||-|+.||+|+.|+ .+++-+- ..|---.++ .++. -
T Consensus 210 ------------~lG~k~v~wsP~~qflavGsyD~---~lrvlnh--~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql 272 (447)
T KOG4497|consen 210 ------------GLGLKFVEWSPCNQFLAVGSYDQ---MLRVLNH--FTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQL 272 (447)
T ss_pred ------------ccceeEEEeccccceEEeeccch---hhhhhce--eeeeehhhhccchhccCchhhhhhhhhcchhhh
Confidence 12477899999999999999998 5665432 223100000 0000 0
Q ss_pred CcEEEEEccCCCcEEEEEecCCcE------------------------EEEEEEEeeeeCCCeeEEEEeC---CEEEEee
Q 000736 321 DGIRFMWHPTKPLQLICWTLDGQI------------------------TTYNFIWTTAVMENSTALVIDG---SKILVTP 373 (1323)
Q Consensus 321 ~~~~v~Wsp~~~~~L~~~~~~g~~------------------------~~~~~~~~~~~~d~~~v~viDg---~~l~lt~ 373 (1323)
....+.|-|...- .+.|-.+..+ -.....|+- |...++...+ +.+.+|+
T Consensus 273 ~~~cLsf~p~~~~-a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~---Ds~y~aTrnd~~PnalW~Wd 348 (447)
T KOG4497|consen 273 LHHCLSFTPTDLE-AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC---DSTYAATRNDKYPNALWLWD 348 (447)
T ss_pred cccccccCCCccc-cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC---CceEEeeecCCCCceEEEEe
Confidence 0022333333210 1111110000 000111211 2222333332 3466777
Q ss_pred cCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCCCCccccccCCceeEeeeccccccCcEEEE
Q 000736 374 LSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHL 453 (1323)
Q Consensus 374 l~~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l 453 (1323)
++.--+ +-.+...++|....|.|.. ..|++.+....+++|...++.+. -.++++| .|..+
T Consensus 349 lq~l~l-----~avLiQk~piraf~WdP~~--prL~vctg~srLY~W~psg~~~V-~vP~~GF------------~i~~l 408 (447)
T KOG4497|consen 349 LQNLKL-----HAVLIQKHPIRAFEWDPGR--PRLVVCTGKSRLYFWAPSGPRVV-GVPKKGF------------NIQKL 408 (447)
T ss_pred chhhhh-----hhhhhhccceeEEEeCCCC--ceEEEEcCCceEEEEcCCCceEE-ecCCCCc------------eeeeE
Confidence 654221 1112356789999999988 78999888888999988764433 1233333 57889
Q ss_pred EEecCCeEEEEEecC
Q 000736 454 IWLGSHLLLSVSHHG 468 (1323)
Q Consensus 454 ~~~~d~~lla~~~~~ 468 (1323)
.|..+|..++..+.+
T Consensus 409 ~W~~~g~~i~l~~kD 423 (447)
T KOG4497|consen 409 QWLQPGEFIVLCGKD 423 (447)
T ss_pred EecCCCcEEEEEcCC
Confidence 999999988876653
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-12 Score=161.07 Aligned_cols=234 Identities=10% Similarity=0.027 Sum_probs=175.3
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1323)
.+.+.-|. .+.+..++.++.|..|+. .++.. +...+.+| .+.|.+++|..-+..|++|+.|.++++
T Consensus 210 ~~~~~q~~--~~~~~~~s~~~tl~~~~~--~~~~~------i~~~l~GH----~g~V~~l~~~~~~~~lvsgS~D~t~rv 275 (537)
T KOG0274|consen 210 VVLCLQLH--DGFFKSGSDDSTLHLWDL--NNGYL------ILTRLVGH----FGGVWGLAFPSGGDKLVSGSTDKTERV 275 (537)
T ss_pred hhhhheee--cCeEEecCCCceeEEeec--ccceE------EEeeccCC----CCCceeEEEecCCCEEEEEecCCcEEe
Confidence 34444444 667888888998889999 55543 11225555 479999999988899999999999999
Q ss_pred EeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEE
Q 000736 102 HSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1323)
Q Consensus 102 w~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~is 180 (1323)
||..++.+. +...|.+.|.++..- +-.+++||.|.+|++|+-. +...++... +|.+.|.++.
T Consensus 276 Wd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~----n~~~l~l~~-----------~h~~~V~~v~ 338 (537)
T KOG0274|consen 276 WDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVT----NGACLNLLR-----------GHTGPVNCVQ 338 (537)
T ss_pred EecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEecc----CcceEEEec-----------cccccEEEEE
Confidence 999998875 444468889988775 4588889999999998533 333443322 4667888888
Q ss_pred EecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCe
Q 000736 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL 260 (1323)
Q Consensus 181 WspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl 260 (1323)
.. +.+++ +++. |++|+||+..+|+++.++.+|.+.|.++.+.+. +.+.+|+-|+ .|+.|+..+.
T Consensus 339 ~~--~~~lv-sgs~------d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~------~IkvWdl~~~ 402 (537)
T KOG0274|consen 339 LD--EPLLV-SGSY------DGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDT------TIKVWDLRTK 402 (537)
T ss_pred ec--CCEEE-EEec------CceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeecc------ceEeecCCch
Confidence 76 66777 5544 479999999999999999999999999987766 8899999874 5999998765
Q ss_pred eEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCe
Q 000736 261 ERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1323)
Q Consensus 261 ~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~ 308 (1323)
+.-..++..+ ...|.. ....++.|.+++.|+ +|++||..++.
T Consensus 403 ~~c~~tl~~h-~~~v~~--l~~~~~~Lvs~~aD~---~Ik~WD~~~~~ 444 (537)
T KOG0274|consen 403 RKCIHTLQGH-TSLVSS--LLLRDNFLVSSSADG---TIKLWDAEEGE 444 (537)
T ss_pred hhhhhhhcCC-cccccc--cccccceeEeccccc---cEEEeecccCc
Confidence 2111123333 344533 356789999999999 99999988764
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.2e-13 Score=157.16 Aligned_cols=228 Identities=11% Similarity=0.100 Sum_probs=177.8
Q ss_pred Eeee-cCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeC
Q 000736 26 SALD-IEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSV 104 (1323)
Q Consensus 26 ~~~d-~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~ 104 (1323)
.+|. .|+.++++++.|..|+.|.+ .+.+- .-+ |++| ...|.+++-.-++. |++||-|.|+++|-.
T Consensus 64 i~y~e~~~~~l~~g~~D~~i~v~~~--~~~~P---~~~----LkgH----~snVC~ls~~~~~~-~iSgSWD~TakvW~~ 129 (745)
T KOG0301|consen 64 ICYAESDKGRLVVGGMDTTIIVFKL--SQAEP---LYT----LKGH----KSNVCSLSIGEDGT-LISGSWDSTAKVWRI 129 (745)
T ss_pred ceeccccCcceEeecccceEEEEec--CCCCc---hhh----hhcc----ccceeeeecCCcCc-eEecccccceEEecc
Confidence 4555 67788999999999999988 33321 222 5666 46899998888887 899999999999987
Q ss_pred CCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecC
Q 000736 105 DGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD 184 (1323)
Q Consensus 105 ~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspD 184 (1323)
....-.+.| |...|++++.=|++ .+++||+|.+|++|.- ...+ ..|.+|.+-|..++.=+|
T Consensus 130 ~~l~~~l~g-H~asVWAv~~l~e~-~~vTgsaDKtIklWk~-~~~l----------------~tf~gHtD~VRgL~vl~~ 190 (745)
T KOG0301|consen 130 GELVYSLQG-HTASVWAVASLPEN-TYVTGSADKTIKLWKG-GTLL----------------KTFSGHTDCVRGLAVLDD 190 (745)
T ss_pred hhhhcccCC-cchheeeeeecCCC-cEEeccCcceeeeccC-Cchh----------------hhhccchhheeeeEEecC
Confidence 543223444 69999999999998 8899999999999843 2222 135578889999999999
Q ss_pred CcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEE
Q 000736 185 GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSS 264 (1323)
Q Consensus 185 G~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~ 264 (1323)
+.++- ++ .|+.||.|+. +|+.+....+|...+.+++-.+++..|+|++.| .++++|... .....
T Consensus 191 ~~flS-cs-------NDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gED------rtlriW~~~-e~~q~ 254 (745)
T KOG0301|consen 191 SHFLS-CS-------NDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGED------RTLRIWKKD-ECVQV 254 (745)
T ss_pred CCeEe-ec-------CCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCC------ceEEEeecC-ceEEE
Confidence 87765 53 4689999999 999999999999999999999999999999987 469999875 22333
Q ss_pred EEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCee
Q 000736 265 FDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1323)
Q Consensus 265 f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~w 309 (1323)
.++| ...|+++..=++|++. +|++|+ .|++|+.....|
T Consensus 255 I~lP---ttsiWsa~~L~NgDIv-vg~SDG---~VrVfT~~k~R~ 292 (745)
T KOG0301|consen 255 ITLP---TTSIWSAKVLLNGDIV-VGGSDG---RVRVFTVDKDRK 292 (745)
T ss_pred EecC---ccceEEEEEeeCCCEE-EeccCc---eEEEEEeccccc
Confidence 3443 3468999888899854 667777 899999875443
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.5e-13 Score=151.91 Aligned_cols=245 Identities=13% Similarity=0.110 Sum_probs=167.3
Q ss_pred ceeEEeeecCCC-EEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEE
Q 000736 22 ILQFSALDIEQN-RLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1323)
Q Consensus 22 ~~~~~~~d~~~~-~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~ 100 (1323)
++...+|-++|. .+++++-...+|.||+ .+.++ .+++ .+.++. ...+..+..|||+++|++++..|-|.
T Consensus 259 Pi~~a~f~p~G~~~i~~s~rrky~ysyDl--e~ak~-~k~~-~~~g~e------~~~~e~FeVShd~~fia~~G~~G~I~ 328 (514)
T KOG2055|consen 259 PIQKAEFAPNGHSVIFTSGRRKYLYSYDL--ETAKV-TKLK-PPYGVE------EKSMERFEVSHDSNFIAIAGNNGHIH 328 (514)
T ss_pred ccceeeecCCCceEEEecccceEEEEeec--ccccc-cccc-CCCCcc------cchhheeEecCCCCeEEEcccCceEE
Confidence 567778888888 5555565778999999 56553 1222 122211 34678889999999999999999999
Q ss_pred EEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEE
Q 000736 101 LHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1323)
Q Consensus 101 lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~is 180 (1323)
|....|+++-..=.+++.|..++||.||+.|.+.+++|.|.+|+-.-. ...-.+..+ +.| .-.+++
T Consensus 329 lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~-~~~~rf~D~---G~v----------~gts~~ 394 (514)
T KOG2055|consen 329 LLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQN-SCLHRFVDD---GSV----------HGTSLC 394 (514)
T ss_pred eehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCc-ceEEEEeec---Ccc----------ceeeee
Confidence 998887654322234677999999999999999999999999863211 111111111 111 126788
Q ss_pred EecCCcEEEEeeccccccCCCCEEEEEECCCC------ceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEE
Q 000736 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSG------TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1323)
Q Consensus 181 WspDG~~lAtvss~d~~~~~d~~IrVWd~~~G------~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~ 254 (1323)
-|++|+||| +||- .|.|-|||.++- +.+.+.......|.+++|+||++++|.+|+.. +..+++
T Consensus 395 ~S~ng~ylA-~GS~------~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~----knalrL 463 (514)
T KOG2055|consen 395 ISLNGSYLA-TGSD------SGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVK----KNALRL 463 (514)
T ss_pred ecCCCceEE-eccC------cceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhcc----ccceEE
Confidence 899999999 7753 489999997332 12222222334578999999999999998753 455655
Q ss_pred EeCCCeeEEEEE-eccC--CCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeC
Q 000736 255 YERNGLERSSFD-INEQ--IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1323)
Q Consensus 255 ~e~nGl~~~~f~-l~~~--~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n 306 (1323)
-..-. -..|. .|.. .-+.|.+++|||.|-+||+|..++ .|.||-+..
T Consensus 464 VHvPS--~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~g---rv~l~kL~h 513 (514)
T KOG2055|consen 464 VHVPS--CTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAG---RVHLFKLHH 513 (514)
T ss_pred Eeccc--eeeeccCCCCCCcccceEEEEecCCCceEEeecCCC---ceeeEeecc
Confidence 43210 01111 1211 125699999999999999999988 899998753
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.4e-13 Score=153.03 Aligned_cols=276 Identities=14% Similarity=0.136 Sum_probs=191.6
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCC-------eEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecC
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGN-------ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDW 147 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~-------~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~ 147 (1323)
|.-|.++.+|...+.+.+|+ .|.|++||+... .+.+... +..|++...+|||+.|.+|+.-.+|.||+
T Consensus 419 GEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~r-dnyiRSckL~pdgrtLivGGeastlsiWD--- 493 (705)
T KOG0639|consen 419 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNR-DNYIRSCKLLPDGRTLIVGGEASTLSIWD--- 493 (705)
T ss_pred CcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCc-ccceeeeEecCCCceEEeccccceeeeee---
Confidence 55677899999999988876 688999999641 2345544 67899999999999999999999998864
Q ss_pred ceeeeee-ecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCcee
Q 000736 148 DLLYENP-LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGA 226 (1323)
Q Consensus 148 d~~~e~~-l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~ 226 (1323)
..+... +..... ........++.|||.+..-++- .|+.|+|||..+-.+...+.+|.....
T Consensus 494 -LAapTprikaelt----------ssapaCyALa~spDakvcFscc-------sdGnI~vwDLhnq~~VrqfqGhtDGas 555 (705)
T KOG0639|consen 494 -LAAPTPRIKAELT----------SSAPACYALAISPDAKVCFSCC-------SDGNIAVWDLHNQTLVRQFQGHTDGAS 555 (705)
T ss_pred -ccCCCcchhhhcC----------CcchhhhhhhcCCccceeeeec-------cCCcEEEEEcccceeeecccCCCCCce
Confidence 332221 110000 0002346788999998544132 258999999988888999999999999
Q ss_pred EEEEccCCCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee
Q 000736 227 VLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1323)
Q Consensus 227 slawsPdG~lIAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~ 305 (1323)
+|..|+||..|=+|+-| ++|+-|| |.|....+..+ ...|.+|..+|.++.||+|-.++ .|.+-.++
T Consensus 556 cIdis~dGtklWTGGlD------ntvRcWDlregrqlqqhdF----~SQIfSLg~cP~~dWlavGMens---~vevlh~s 622 (705)
T KOG0639|consen 556 CIDISKDGTKLWTGGLD------NTVRCWDLREGRQLQQHDF----SSQIFSLGYCPTGDWLAVGMENS---NVEVLHTS 622 (705)
T ss_pred eEEecCCCceeecCCCc------cceeehhhhhhhhhhhhhh----hhhheecccCCCccceeeecccC---cEEEEecC
Confidence 99999999999999886 5799999 34432221111 35699999999999999999988 67777776
Q ss_pred CCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCcee
Q 000736 306 NNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYL 385 (1323)
Q Consensus 306 n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~ 385 (1323)
..+-| .+..+..-..++.|.+-|.. + +.++ -++-+ ..|.+|-..+.
T Consensus 623 kp~ky---qlhlheScVLSlKFa~cGkw-f-vStG------------------------kDnlL-----nawrtPyGasi 668 (705)
T KOG0639|consen 623 KPEKY---QLHLHESCVLSLKFAYCGKW-F-VSTG------------------------KDNLL-----NAWRTPYGASI 668 (705)
T ss_pred Cccce---eecccccEEEEEEecccCce-e-eecC------------------------chhhh-----hhccCccccce
Confidence 54432 22222111266777765443 1 1110 11111 22334444455
Q ss_pred eeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEEC
Q 000736 386 FSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDL 422 (1323)
Q Consensus 386 ~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~ 422 (1323)
++..-.++|.+...|.|. +++++++.|..-.+|.+
T Consensus 669 FqskE~SsVlsCDIS~dd--kyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 669 FQSKESSSVLSCDISFDD--KYIVTGSGDKKATVYEV 703 (705)
T ss_pred eeccccCcceeeeeccCc--eEEEecCCCcceEEEEE
Confidence 566667889998999998 89999999988888865
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.2e-12 Score=140.05 Aligned_cols=275 Identities=11% Similarity=0.103 Sum_probs=191.7
Q ss_pred ccccc-ccceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEE
Q 000736 15 ELQSK-DEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVG 93 (1323)
Q Consensus 15 ~~~~~-~~~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~a 93 (1323)
+++.| .+.+..+-|++.++.|.++|=|+.+..||.+ .++. +.. +..+..+++.+|.++. .+++|
T Consensus 7 ~l~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~--~~~l--~~~----------~~~~~plL~c~F~d~~-~~~~G 71 (323)
T KOG1036|consen 7 ELENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVP--ANSL--KLK----------FKHGAPLLDCAFADES-TIVTG 71 (323)
T ss_pred ccCCCChhceeeEEEcCcCCcEEEEeccCcEEEEecc--chhh--hhh----------eecCCceeeeeccCCc-eEEEe
Confidence 34444 3388999999999999999999999999983 3321 111 2225689999999865 56789
Q ss_pred eCCCcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCC
Q 000736 94 TSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSF 173 (1323)
Q Consensus 94 s~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~ 173 (1323)
+.||+|+++|++++....+|.|+.+|.|+..+|--..+++||.|++|++|+ +-........+. .
T Consensus 72 ~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD----~R~~~~~~~~d~------------~ 135 (323)
T KOG1036|consen 72 GLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWD----PRNKVVVGTFDQ------------G 135 (323)
T ss_pred ccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEe----cccccccccccc------------C
Confidence 999999999999998889999999999999999989999999999999975 222221111111 1
Q ss_pred CCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeee--eccCCCceeEEEEccCCCeEEEEecCCCCCCCCe
Q 000736 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS--SELKAFMGAVLEWMPSGANIAAVYDRKSENKCPS 251 (1323)
Q Consensus 174 ~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t--~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~ 251 (1323)
..|.+++-+ |..|+ |+. .++.|.+||..+-..... -.+....+.+|+.-|+|.=.|+++-++ +..
T Consensus 136 kkVy~~~v~--g~~Lv-Vg~------~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieG----RVa 202 (323)
T KOG1036|consen 136 KKVYCMDVS--GNRLV-VGT------SDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEG----RVA 202 (323)
T ss_pred ceEEEEecc--CCEEE-Eee------cCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecc----eEE
Confidence 245666554 44566 653 369999999855433221 123556789999999888777777754 456
Q ss_pred EEEEeCCC-eeEEEEEec-----cCC---CCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCc
Q 000736 252 IVFYERNG-LERSSFDIN-----EQI---DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG 322 (1323)
Q Consensus 252 V~~~e~nG-l~~~~f~l~-----~~~---~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~ 322 (1323)
|-++|..- .....|.++ ..+ -..|++|+|+|-...||+|+.|| .|-+|+..|.+- ++|--.+ +.+.
T Consensus 203 vE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG---~V~~Wd~~~rKr-l~q~~~~-~~SI 277 (323)
T KOG1036|consen 203 VEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDG---IVNIWDLFNRKR-LKQLAKY-ETSI 277 (323)
T ss_pred EEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCc---eEEEccCcchhh-hhhccCC-CCce
Confidence 66777531 111223332 111 14699999999999999999999 999999988542 2222112 2334
Q ss_pred EEEEEccCCCcEEEEEe
Q 000736 323 IRFMWHPTKPLQLICWT 339 (1323)
Q Consensus 323 ~~v~Wsp~~~~~L~~~~ 339 (1323)
.+++|+-+|.. |++++
T Consensus 278 ~slsfs~dG~~-LAia~ 293 (323)
T KOG1036|consen 278 SSLSFSMDGSL-LAIAS 293 (323)
T ss_pred EEEEeccCCCe-EEEEe
Confidence 77888888764 67765
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.2e-12 Score=156.23 Aligned_cols=271 Identities=13% Similarity=0.046 Sum_probs=186.1
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEE---EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeee
Q 000736 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE---VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYE 152 (1323)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e---~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e 152 (1323)
..++...|. ...+.+++.+++|++|+..++... ..| |.++|+++++.--+..|.+|+.|.|+++|+ ..++
T Consensus 209 ~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~G-H~g~V~~l~~~~~~~~lvsgS~D~t~rvWd----~~sg 281 (537)
T KOG0274|consen 209 HVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVG-HFGGVWGLAFPSGGDKLVSGSTDKTERVWD----CSTG 281 (537)
T ss_pred chhhhheee--cCeEEecCCCceeEEeecccceEEEeeccC-CCCCceeEEEecCCCEEEEEecCCcEEeEe----cCCC
Confidence 467777777 567889999999999999886543 445 699999999988788999999999999875 2333
Q ss_pred eeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEcc
Q 000736 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP 232 (1323)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsP 232 (1323)
.+.+.. .+|.+.+.++.-. +-+++ +++ .|.+||||+.++|.++.++.+|.+.|.++...
T Consensus 282 ~C~~~l-----------~gh~stv~~~~~~--~~~~~-sgs------~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~- 340 (537)
T KOG0274|consen 282 ECTHSL-----------QGHTSSVRCLTID--PFLLV-SGS------RDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD- 340 (537)
T ss_pred cEEEEe-----------cCCCceEEEEEcc--CceEe-ecc------CCceEEEEeccCcceEEEeccccccEEEEEec-
Confidence 443332 2556666666543 33444 443 46999999998899999999999999999988
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEE--EeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeE
Q 000736 233 SGANIAAVYDRKSENKCPSIVFYERNGLERSSF--DINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1323)
Q Consensus 233 dG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f--~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wy 310 (1323)
+.++.+|+.| ..|++|+.. .+++ ++.+ |...|.++.+.+. ..+.+|+.|+ +|++||..+.. .
T Consensus 341 -~~~lvsgs~d------~~v~VW~~~---~~~cl~sl~g-H~~~V~sl~~~~~-~~~~Sgs~D~---~IkvWdl~~~~-~ 404 (537)
T KOG0274|consen 341 -EPLLVSGSYD------GTVKVWDPR---TGKCLKSLSG-HTGRVYSLIVDSE-NRLLSGSLDT---TIKVWDLRTKR-K 404 (537)
T ss_pred -CCEEEEEecC------ceEEEEEhh---hceeeeeecC-CcceEEEEEecCc-ceEEeeeecc---ceEeecCCchh-h
Confidence 8899999986 369999965 2332 2334 4678999977766 8999999998 99999998851 1
Q ss_pred EEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecC
Q 000736 311 LKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKF 390 (1323)
Q Consensus 311 lkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~~ 390 (1323)
+.+.+..|. .+.++ +.++ +.-++...-+++|++|+.... -|.++++.
T Consensus 405 c~~tl~~h~----~~v~~------l~~~------------------~~~Lvs~~aD~~Ik~WD~~~~-----~~~~~~~~ 451 (537)
T KOG0274|consen 405 CIHTLQGHT----SLVSS------LLLR------------------DNFLVSSSADGTIKLWDAEEG-----ECLRTLEG 451 (537)
T ss_pred hhhhhcCCc----ccccc------cccc------------------cceeEeccccccEEEeecccC-----ceeeeecc
Confidence 122222211 11100 1110 111111111225666665432 23344433
Q ss_pred --CCCEEEEEEecCCCCCEEEEEECCCcEEEEECCCCCc
Q 000736 391 --PTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDM 427 (1323)
Q Consensus 391 --~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~ 427 (1323)
...|..+++. + ..+++++.||++++|++....+
T Consensus 452 ~~~~~v~~l~~~-~---~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 452 RHVGGVSALALG-K---EEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred CCcccEEEeecC-c---ceEEEEecCCeeEEEecccCch
Confidence 3678888876 2 5788888999999999976443
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.9e-13 Score=150.70 Aligned_cols=238 Identities=14% Similarity=0.213 Sum_probs=163.8
Q ss_pred CEEEEEeCCCcEEEEecccccccccceee-c-cc-cccccccCCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCe
Q 000736 33 NRLFFASSANNIYSAQLSSFQNERASIKT-A-IS-AEIEHIDLEPGDSITAFDYLMEKE-ALIVGTSSGLLLLHSVDGNA 108 (1323)
Q Consensus 33 ~~l~~~s~~~~i~~~~~~~~~~~~~~~~~-~-l~-~~~~~~~~~~~~~V~~v~~spdg~-~La~as~dG~I~lw~~~~~~ 108 (1323)
++|.+.+..+.++.||.+ ......... . .| -.|++|. +.=.++.|++... .|++++.|++|.+||++...
T Consensus 138 ~iVAt~t~~~dv~Vfd~t--k~~s~~~~~~~~~Pdl~L~gH~----~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~ 211 (422)
T KOG0264|consen 138 NIVATKTSSGDVYVFDYT--KHPSKPKASGECRPDLRLKGHE----KEGYGLSWNRQQEGTLLSGSDDHTICLWDINAES 211 (422)
T ss_pred cEEEecCCCCCEEEEEec--cCCCcccccccCCCceEEEeec----ccccccccccccceeEeeccCCCcEEEEeccccc
Confidence 456666777889999984 222111110 0 00 0144442 2245688988654 78899999999999997421
Q ss_pred --------EEEeceecCcEEEEEEcCC-CCeEEEEeCCccEEEEe-ecCceeeeeeecccCCCceeccCccccCCCCeEE
Q 000736 109 --------TEVVGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1323)
Q Consensus 109 --------~e~vg~~~~~I~~~awSPD-G~~LA~~s~d~tV~l~t-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~ 178 (1323)
......|++.|..++|.|- ..++++++.|+.+.||+ |.| ...+-+.. .+|+..+.+
T Consensus 212 ~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~---~~~~~~~~-----------~ah~~~vn~ 277 (422)
T KOG0264|consen 212 KEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN---TSKPSHSV-----------KAHSAEVNC 277 (422)
T ss_pred cCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC---CCCCcccc-----------cccCCceeE
Confidence 1244557899999999995 56789999999999985 543 22222211 267788999
Q ss_pred EEEecCCcEEEEeeccccccCCCCEEEEEECCCC-ceeeeeccCCCceeEEEEccCCC-eEEEEecCCCCCCCCeEEEEe
Q 000736 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG-TLQASSELKAFMGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYE 256 (1323)
Q Consensus 179 isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G-~l~~t~e~~~~~v~slawsPdG~-lIAs~s~d~~~~~~~~V~~~e 256 (1323)
++|+|=+.++.++++ .|++|++||+++- +.+.++++|..-|..|.|||.-. .+||++.| ..+.+||
T Consensus 278 ~~fnp~~~~ilAT~S------~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D------~rl~vWD 345 (422)
T KOG0264|consen 278 VAFNPFNEFILATGS------ADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTD------RRLNVWD 345 (422)
T ss_pred EEeCCCCCceEEecc------CCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccC------CcEEEEe
Confidence 999997665442554 3689999998643 45667899999999999999876 56777765 5688998
Q ss_pred CC--CeeEE---------E--EEeccCCCCcEEEEEEccCCC-eeEEEEccCCCCeEEEEEeeC
Q 000736 257 RN--GLERS---------S--FDINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSN 306 (1323)
Q Consensus 257 ~n--Gl~~~---------~--f~l~~~~~~~V~~laWSpDg~-~LA~~~~d~~~~~V~LW~~~n 306 (1323)
.+ |.... + | +.+.+...|..++|+|+-- .+|+++.|. ++|||.+..
T Consensus 346 ls~ig~eq~~eda~dgppEllF-~HgGH~~kV~DfsWnp~ePW~I~SvaeDN---~LqIW~~s~ 405 (422)
T KOG0264|consen 346 LSRIGEEQSPEDAEDGPPELLF-IHGGHTAKVSDFSWNPNEPWTIASVAEDN---ILQIWQMAE 405 (422)
T ss_pred ccccccccChhhhccCCcceeE-EecCcccccccccCCCCCCeEEEEecCCc---eEEEeeccc
Confidence 54 22110 0 2 2234467899999999876 577788887 999999975
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.7e-13 Score=161.10 Aligned_cols=281 Identities=12% Similarity=0.137 Sum_probs=178.9
Q ss_pred ceeEEeeecCCCEEEEEeCC-CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEe-cCCCEEEEEeCCCcE
Q 000736 22 ILQFSALDIEQNRLFFASSA-NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYL-MEKEALIVGTSSGLL 99 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~-~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~s-pdg~~La~as~dG~I 99 (1323)
...+++...+...|..+.-. ..+|..+.+ .....+.+. ...-.- -.-...+|.|. -+.+.||+++.+|.|
T Consensus 41 ~~nAIs~nr~~~qiv~AGrs~lklyai~~~--~~~~~~~~~-----~k~kqn-~~~S~~DVkW~~~~~NlIAT~s~nG~i 112 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGRSLLKLYAINPN--DFSEKCNHR-----FKTKQN-KFYSAADVKWGQLYSNLIATCSTNGVI 112 (839)
T ss_pred ccceEeecCCcceeEEecccceeeEeeCcc--cCCcceeee-----cccccc-eeeehhhcccccchhhhheeecCCCcE
Confidence 34556666666666665443 347777663 222112221 010000 01234566675 356899999999999
Q ss_pred EEEeCCC----CeEEEeceecCcEEEEEEcCCC-CeEEEEeCCccEEEEe-ecCceeeeeeecccCCCceeccCccccCC
Q 000736 100 LLHSVDG----NATEVVGRVEGGVRFISPSPDG-DLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSF 173 (1323)
Q Consensus 100 ~lw~~~~----~~~e~vg~~~~~I~~~awSPDG-~~LA~~s~d~tV~l~t-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~ 173 (1323)
.+||+.- ..+..+-.|+..|+++.|++-. .+|++||.||+|++|+ |.-+... .|.+..
T Consensus 113 ~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~----------------t~~~nS 176 (839)
T KOG0269|consen 113 SVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS----------------TFRSNS 176 (839)
T ss_pred EEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc----------------cccccc
Confidence 9999964 2334667789999999998864 6788999999999875 2211111 122344
Q ss_pred CCeEEEEEec-CCcEEEEeeccccccCCCCEEEEEECC-CCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCe
Q 000736 174 SFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPS 251 (1323)
Q Consensus 174 ~~i~~isWsp-DG~~lAtvss~d~~~~~d~~IrVWd~~-~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~ 251 (1323)
..|..|.|+| +|.+|| +. .| .|.+++||.+ ..+....+..|.|.|.++.|+|++.+||+|++|+ .
T Consensus 177 ESiRDV~fsp~~~~~F~-s~-~d-----sG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK------~ 243 (839)
T KOG0269|consen 177 ESIRDVKFSPGYGNKFA-SI-HD-----SGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDK------M 243 (839)
T ss_pred hhhhceeeccCCCceEE-Ee-cC-----CceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCc------c
Confidence 6778999997 567888 33 22 4899999974 3344445678999999999999999999999975 6
Q ss_pred EEEEeCCCeeEE-EEEeccCCCCcEEEEEEccCCCe-eEEEEccCCCCeEEEEEeeCCeeEEEe-EEEEecCCcEEEEEc
Q 000736 252 IVFYERNGLERS-SFDINEQIDSTVELLKWNCMSDL-LAAVVRFEEYDSVKICFFSNNHWYLKY-EIRYLRRDGIRFMWH 328 (1323)
Q Consensus 252 V~~~e~nGl~~~-~f~l~~~~~~~V~~laWSpDg~~-LA~~~~d~~~~~V~LW~~~n~~wylkq-~l~~~~~~~~~v~Ws 328 (1323)
|++|+..+.+.. ..++. ....|..|+|-|+-+. ||+.+.- ....|.+||+.- .|+.. .+.-|......+.|.
T Consensus 244 vkiWd~t~~~~~~~~tIn--Tiapv~rVkWRP~~~~hLAtcsmv-~dtsV~VWDvrR--PYIP~~t~~eH~~~vt~i~W~ 318 (839)
T KOG0269|consen 244 VKIWDMTDSRAKPKHTIN--TIAPVGRVKWRPARSYHLATCSMV-VDTSVHVWDVRR--PYIPYATFLEHTDSVTGIAWD 318 (839)
T ss_pred EEEEeccCCCccceeEEe--ecceeeeeeeccCccchhhhhhcc-ccceEEEEeecc--ccccceeeeccCccccceecc
Confidence 999997653322 12232 2357899999999764 5655432 233799999964 23322 222222223778887
Q ss_pred cCCCcEEEEEecCCcE
Q 000736 329 PTKPLQLICWTLDGQI 344 (1323)
Q Consensus 329 p~~~~~L~~~~~~g~~ 344 (1323)
......|...+.||.+
T Consensus 319 ~~d~~~l~s~sKD~tv 334 (839)
T KOG0269|consen 319 SGDRINLWSCSKDGTV 334 (839)
T ss_pred CCCceeeEeecCccHH
Confidence 6444444444445543
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-12 Score=142.57 Aligned_cols=161 Identities=18% Similarity=0.287 Sum_probs=113.0
Q ss_pred EEEEEecCCCEEEEEeC----------CCcEEEEeC--CCCeEEEece-ecCcEEEEEEcCCCCeEEEEeC--CccEEEE
Q 000736 79 TAFDYLMEKEALIVGTS----------SGLLLLHSV--DGNATEVVGR-VEGGVRFISPSPDGDLLGVTTG--FGQILVM 143 (1323)
Q Consensus 79 ~~v~~spdg~~La~as~----------dG~I~lw~~--~~~~~e~vg~-~~~~I~~~awSPDG~~LA~~s~--d~tV~l~ 143 (1323)
..+.|+|+|+.||+-.. -|...||-+ .+...+.+.- .++.|.+++|||+|+.+|++.+ +++|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 57889999999987654 233455444 3334443321 2456999999999999988764 4688888
Q ss_pred eecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCC
Q 000736 144 THDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF 223 (1323)
Q Consensus 144 t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~ 223 (1323)
+...+++.... ...+..|.|||+|++|| +++.+ +..+.+.+||.++.+.+.+.+..
T Consensus 89 d~~~~~i~~~~------------------~~~~n~i~wsP~G~~l~-~~g~~---n~~G~l~~wd~~~~~~i~~~~~~-- 144 (194)
T PF08662_consen 89 DVKGKKIFSFG------------------TQPRNTISWSPDGRFLV-LAGFG---NLNGDLEFWDVRKKKKISTFEHS-- 144 (194)
T ss_pred cCcccEeEeec------------------CCCceEEEECCCCCEEE-EEEcc---CCCcEEEEEECCCCEEeeccccC--
Confidence 76555444332 12457899999999999 66543 23478999999888888776533
Q ss_pred ceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEE
Q 000736 224 MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERS 263 (1323)
Q Consensus 224 ~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~ 263 (1323)
....++|||||+++|++...+....++.+++|+-+|....
T Consensus 145 ~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~ 184 (194)
T PF08662_consen 145 DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLY 184 (194)
T ss_pred cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeE
Confidence 3689999999999998875422223467889998886544
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.5e-13 Score=160.45 Aligned_cols=289 Identities=15% Similarity=0.173 Sum_probs=196.7
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEeCCC--CeEEE---ece---ecCcEEEEEEc-CCCCeEEEEeCCccEEEEeecC
Q 000736 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDG--NATEV---VGR---VEGGVRFISPS-PDGDLLGVTTGFGQILVMTHDW 147 (1323)
Q Consensus 77 ~V~~v~~spdg~~La~as~dG~I~lw~~~~--~~~e~---vg~---~~~~I~~~awS-PDG~~LA~~s~d~tV~l~t~~~ 147 (1323)
...+|.-.++-..+++|+. -..+||..+. ....+ ++. ..-.+..+.|+ -+.++||+++..|.|.+|+..
T Consensus 41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln- 118 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN- 118 (839)
T ss_pred ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC-
Confidence 4667777788888888764 3567776543 11111 121 11234567785 356899999999999998643
Q ss_pred ceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeE
Q 000736 148 DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAV 227 (1323)
Q Consensus 148 d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~s 227 (1323)
.++.+..+ +-|..|.-.+.++.|++--.++. +++ +.|++||+||.....-..++.+....+..
T Consensus 119 k~~rnk~l-----------~~f~EH~Rs~~~ldfh~tep~il-iSG-----SQDg~vK~~DlR~~~S~~t~~~nSESiRD 181 (839)
T KOG0269|consen 119 KSIRNKLL-----------TVFNEHERSANKLDFHSTEPNIL-ISG-----SQDGTVKCWDLRSKKSKSTFRSNSESIRD 181 (839)
T ss_pred ccccchhh-----------hHhhhhccceeeeeeccCCccEE-Eec-----CCCceEEEEeeecccccccccccchhhhc
Confidence 11222221 23446777889999999876666 443 46799999998777777777666777899
Q ss_pred EEEccC-CCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeC
Q 000736 228 LEWMPS-GANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1323)
Q Consensus 228 lawsPd-G~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n 306 (1323)
|.|+|. |+.+|++.+ .+.+.+||.--...-++.+. .|.+.|..+.|+|++..||+|+.|+ .|+||++..
T Consensus 182 V~fsp~~~~~F~s~~d------sG~lqlWDlRqp~r~~~k~~-AH~GpV~c~nwhPnr~~lATGGRDK---~vkiWd~t~ 251 (839)
T KOG0269|consen 182 VKFSPGYGNKFASIHD------SGYLQLWDLRQPDRCEKKLT-AHNGPVLCLNWHPNREWLATGGRDK---MVKIWDMTD 251 (839)
T ss_pred eeeccCCCceEEEecC------CceEEEeeccCchhHHHHhh-cccCceEEEeecCCCceeeecCCCc---cEEEEeccC
Confidence 999995 677888776 35799999532222222222 2467899999999999999999999 999999986
Q ss_pred CeeEEEeEEEEecCCc-EEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCcee
Q 000736 307 NHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYL 385 (1323)
Q Consensus 307 ~~wylkq~l~~~~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~ 385 (1323)
.....+.++. ...+ ..|.|-|+.++.|++. +.++...|.+|+++..-+|--+.
T Consensus 252 ~~~~~~~tIn--Tiapv~rVkWRP~~~~hLAtc-----------------------smv~dtsV~VWDvrRPYIP~~t~- 305 (839)
T KOG0269|consen 252 SRAKPKHTIN--TIAPVGRVKWRPARSYHLATC-----------------------SMVVDTSVHVWDVRRPYIPYATF- 305 (839)
T ss_pred CCccceeEEe--ecceeeeeeeccCccchhhhh-----------------------hccccceEEEEeeccccccceee-
Confidence 5443333332 2344 7899999988654332 23345568889998877764332
Q ss_pred eeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECC
Q 000736 386 FSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1323)
Q Consensus 386 ~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~ 423 (1323)
.+|.+.|..++|-. +....|-+++-||+|..-.+.
T Consensus 306 --~eH~~~vt~i~W~~-~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 306 --LEHTDSVTGIAWDS-GDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred --eccCccccceeccC-CCceeeEeecCccHHHHhhhh
Confidence 36889999999955 212567788888877654443
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-12 Score=158.00 Aligned_cols=221 Identities=13% Similarity=0.124 Sum_probs=146.1
Q ss_pred ceeEEeeecCCCEEEEEeC---CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEE-eCCC
Q 000736 22 ILQFSALDIEQNRLFFASS---ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVG-TSSG 97 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~---~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~a-s~dG 97 (1323)
.+...+|.+|+..|++++. ...|+.|++ .+++. .. +... .+.+.++.|||||+.|+.. +.+|
T Consensus 200 ~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl--~~G~~-~~-------l~~~----~~~~~~~~~SPDG~~La~~~~~~g 265 (429)
T PRK03629 200 PLMSPAWSPDGSKLAYVTFESGRSALVIQTL--ANGAV-RQ-------VASF----PRHNGAPAFSPDGSKLAFALSKTG 265 (429)
T ss_pred ceeeeEEcCCCCEEEEEEecCCCcEEEEEEC--CCCCe-EE-------ccCC----CCCcCCeEECCCCCEEEEEEcCCC
Confidence 6778999999999988753 347999998 44442 11 1111 1234578999999999876 4455
Q ss_pred --cEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCC-ccEEEEeecCceeeeeeecccCCCceeccCccccCCC
Q 000736 98 --LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGF-GQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1323)
Q Consensus 98 --~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d-~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~ 174 (1323)
+|.+||++++.+..+......+...+|||||+.|+.++.+ +...+|..+-+.-....+.. ...
T Consensus 266 ~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~--------------~~~ 331 (429)
T PRK03629 266 SLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITW--------------EGS 331 (429)
T ss_pred CcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeec--------------CCC
Confidence 4888999988776444435568899999999999998864 34444432111100011110 011
Q ss_pred CeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEE
Q 000736 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1323)
Q Consensus 175 ~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~ 254 (1323)
.....+|+|||+++|+++.. .+...|.+||.++|+....... ....+.+|+|||+.|+.++.+.. ...+.+
T Consensus 332 ~~~~~~~SpDG~~Ia~~~~~----~g~~~I~~~dl~~g~~~~Lt~~--~~~~~p~~SpDG~~i~~~s~~~~---~~~l~~ 402 (429)
T PRK03629 332 QNQDADVSSDGKFMVMVSSN----GGQQHIAKQDLATGGVQVLTDT--FLDETPSIAPNGTMVIYSSSQGM---GSVLNL 402 (429)
T ss_pred CccCEEECCCCCEEEEEEcc----CCCceEEEEECCCCCeEEeCCC--CCCCCceECCCCCEEEEEEcCCC---ceEEEE
Confidence 23568999999999844432 2346799999978876554332 23457899999999999887643 345777
Q ss_pred EeCCCeeEEEEEeccCCCCcEEEEEEcc
Q 000736 255 YERNGLERSSFDINEQIDSTVELLKWNC 282 (1323)
Q Consensus 255 ~e~nGl~~~~f~l~~~~~~~V~~laWSp 282 (1323)
++.+|..... ++. +++.+...+|||
T Consensus 403 ~~~~G~~~~~--l~~-~~~~~~~p~Wsp 427 (429)
T PRK03629 403 VSTDGRFKAR--LPA-TDGQVKFPAWSP 427 (429)
T ss_pred EECCCCCeEE--Ccc-CCCCcCCcccCC
Confidence 8888765442 433 245688999998
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.6e-12 Score=140.74 Aligned_cols=231 Identities=15% Similarity=0.157 Sum_probs=161.4
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCC--EEEEEeCCCcE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKE--ALIVGTSSGLL 99 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~--~La~as~dG~I 99 (1323)
.+.++|. ++-.+.++|.|-.|..||. ..+.. ..+ +. .+.+.|+++.|.|... .|.+|++||.|
T Consensus 45 sitavAV--s~~~~aSGssDetI~IYDm--~k~~q-lg~------ll----~HagsitaL~F~~~~S~shLlS~sdDG~i 109 (362)
T KOG0294|consen 45 SITALAV--SGPYVASGSSDETIHIYDM--RKRKQ-LGI------LL----SHAGSITALKFYPPLSKSHLLSGSDDGHI 109 (362)
T ss_pred ceeEEEe--cceeEeccCCCCcEEEEec--cchhh-hcc------ee----ccccceEEEEecCCcchhheeeecCCCcE
Confidence 4555555 3456777777888999999 23221 111 22 2368999999999876 89999999999
Q ss_pred EEEeCCCCe-EEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEee-cCceeeeeeecccCCCceeccCccccCCCCeE
Q 000736 100 LLHSVDGNA-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1323)
Q Consensus 100 ~lw~~~~~~-~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~-~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~ 177 (1323)
.+|+...-. +...-.|.+.|+.++..|.|++-.++++|+.+.+|+- .+....-..+... -.
T Consensus 110 ~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~-----------------at 172 (362)
T KOG0294|consen 110 IIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK-----------------AT 172 (362)
T ss_pred EEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCc-----------------ce
Confidence 999987632 2344457888999999999999999999999977641 1222222222222 25
Q ss_pred EEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeC
Q 000736 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER 257 (1323)
Q Consensus 178 ~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~ 257 (1323)
.|.|+|.|.+|+ ++. .+.|-||..++..+....+.. ..+.++-|- ++..+++|.++ ..|.+||.
T Consensus 173 ~v~w~~~Gd~F~-v~~-------~~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d~------~~i~~~D~ 236 (362)
T KOG0294|consen 173 LVSWSPQGDHFV-VSG-------RNKIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVGGDN------EWISLKDT 236 (362)
T ss_pred eeEEcCCCCEEE-EEe-------ccEEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEecCC------ceEEEecc
Confidence 599999999998 653 478999998666555543322 223455554 55667777775 46999998
Q ss_pred CC-eeEEEEEeccCCCCcEEEEEE--ccCCCeeEEEEccCCCCeEEEEEeeC
Q 000736 258 NG-LERSSFDINEQIDSTVELLKW--NCMSDLLAAVVRFEEYDSVKICFFSN 306 (1323)
Q Consensus 258 nG-l~~~~f~l~~~~~~~V~~laW--SpDg~~LA~~~~d~~~~~V~LW~~~n 306 (1323)
+. .-..+|. .++.+|.++.+ +|++.+|+++++|| .|++|++.-
T Consensus 237 ds~~~~~~~~---AH~~RVK~i~~~~~~~~~~lvTaSSDG---~I~vWd~~~ 282 (362)
T KOG0294|consen 237 DSDTPLTEFL---AHENRVKDIASYTNPEHEYLVTASSDG---FIKVWDIDM 282 (362)
T ss_pred CCCccceeee---cchhheeeeEEEecCCceEEEEeccCc---eEEEEEccc
Confidence 73 3333332 24678888874 79999999999999 999999864
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.5e-11 Score=140.60 Aligned_cols=273 Identities=14% Similarity=0.087 Sum_probs=164.7
Q ss_pred CEEEEEe-CCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEe-CCCcEEEEeCC-CCeE
Q 000736 33 NRLFFAS-SANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT-SSGLLLLHSVD-GNAT 109 (1323)
Q Consensus 33 ~~l~~~s-~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as-~dG~I~lw~~~-~~~~ 109 (1323)
..+|++. .+++|..||+. .+++. ..+.+++ .++.+..++++||++.|.+++ .++.|..|+.+ ++.+
T Consensus 2 ~~~y~~~~~~~~I~~~~~~-~~g~l-~~~~~~~---------~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l 70 (330)
T PRK11028 2 QIVYIASPESQQIHVWNLN-HEGAL-TLLQVVD---------VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL 70 (330)
T ss_pred eEEEEEcCCCCCEEEEEEC-CCCce-eeeeEEe---------cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce
Confidence 4578874 47789999993 12221 0112111 135677899999999987764 58889999986 3455
Q ss_pred EEece--ecCcEEEEEEcCCCCeEEEEe-CCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCc
Q 000736 110 EVVGR--VEGGVRFISPSPDGDLLGVTT-GFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGK 186 (1323)
Q Consensus 110 e~vg~--~~~~I~~~awSPDG~~LA~~s-~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~ 186 (1323)
..++. ..+....++|+|||++|.+++ .++.|.+|..+-+.......... .+......++++|||+
T Consensus 71 ~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~------------~~~~~~~~~~~~p~g~ 138 (330)
T PRK11028 71 TFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII------------EGLEGCHSANIDPDNR 138 (330)
T ss_pred EEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec------------cCCCcccEeEeCCCCC
Confidence 43332 234567899999999998887 47788887542111000001000 0011236788999999
Q ss_pred EEEEeeccccccCCCCEEEEEECCC-Cceee------eeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCC-
Q 000736 187 YFATLSEFCNSSKLHKRLKVWERDS-GTLQA------SSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN- 258 (1323)
Q Consensus 187 ~lAtvss~d~~~~~d~~IrVWd~~~-G~l~~------t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~n- 258 (1323)
++. ++. .+++.|.|||.++ |.+.. ...... ....++|+|||++++++... ..+|.+|+.+
T Consensus 139 ~l~-v~~-----~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~-~p~~~~~~pdg~~lyv~~~~-----~~~v~v~~~~~ 206 (330)
T PRK11028 139 TLW-VPC-----LKEDRIRLFTLSDDGHLVAQEPAEVTTVEGA-GPRHMVFHPNQQYAYCVNEL-----NSSVDVWQLKD 206 (330)
T ss_pred EEE-Eee-----CCCCEEEEEEECCCCcccccCCCceecCCCC-CCceEEECCCCCEEEEEecC-----CCEEEEEEEeC
Confidence 887 443 2458999999855 44421 111122 23689999999999888763 3689999864
Q ss_pred --CeeEEEEEec-cC----CCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeC--CeeEEEeEEEEecCCcEEEEEcc
Q 000736 259 --GLERSSFDIN-EQ----IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN--NHWYLKYEIRYLRRDGIRFMWHP 329 (1323)
Q Consensus 259 --Gl~~~~f~l~-~~----~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n--~~wylkq~l~~~~~~~~~v~Wsp 329 (1323)
|.....-.+. .+ +......+.++|||+.|.++... .++|.+|++.. ..+.+.+.+... ..+..+.|+|
T Consensus 207 ~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~--~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~ 283 (330)
T PRK11028 207 PHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT--ASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDH 283 (330)
T ss_pred CCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC--CCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECC
Confidence 2211111111 11 12234579999999999998542 23899999853 233333333221 2236688999
Q ss_pred CCCcEEEEEec-CCcE
Q 000736 330 TKPLQLICWTL-DGQI 344 (1323)
Q Consensus 330 ~~~~~L~~~~~-~g~~ 344 (1323)
++.. |.+.+. +|.+
T Consensus 284 dg~~-l~va~~~~~~v 298 (330)
T PRK11028 284 SGKY-LIAAGQKSHHI 298 (330)
T ss_pred CCCE-EEEEEccCCcE
Confidence 8765 555543 4444
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.4e-11 Score=141.64 Aligned_cols=277 Identities=14% Similarity=0.084 Sum_probs=163.7
Q ss_pred EEEeCCCcEEEEeCCC-CeEEEece--ecCcEEEEEEcCCCCeEEEEe-CCccEEEEeecCc-eeeeeeecccCCCceec
Q 000736 91 IVGTSSGLLLLHSVDG-NATEVVGR--VEGGVRFISPSPDGDLLGVTT-GFGQILVMTHDWD-LLYENPLEELAEGFDVH 165 (1323)
Q Consensus 91 a~as~dG~I~lw~~~~-~~~e~vg~--~~~~I~~~awSPDG~~LA~~s-~d~tV~l~t~~~d-~~~e~~l~~~~~~~~Vs 165 (1323)
++...+|.|.+|++++ ++++.+.. +.++...+++||||+.|.+++ .++.|.+|..+-+ .+.......
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-------- 77 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-------- 77 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec--------
Confidence 3446789999999964 44443322 235678899999999997775 4677877754211 011110000
Q ss_pred cCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECC-CCce---eeeeccCCCceeEEEEccCCCeEEEEe
Q 000736 166 EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTL---QASSELKAFMGAVLEWMPSGANIAAVY 241 (1323)
Q Consensus 166 ~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~-~G~l---~~t~e~~~~~v~slawsPdG~lIAs~s 241 (1323)
..+....++|+|||+++. ++.. .++.|.+|+.+ .|.+ .....+.. ....++++|+|+++.++.
T Consensus 78 ------~~~~p~~i~~~~~g~~l~-v~~~-----~~~~v~v~~~~~~g~~~~~~~~~~~~~-~~~~~~~~p~g~~l~v~~ 144 (330)
T PRK11028 78 ------LPGSPTHISTDHQGRFLF-SASY-----NANCVSVSPLDKDGIPVAPIQIIEGLE-GCHSANIDPDNRTLWVPC 144 (330)
T ss_pred ------CCCCceEEEECCCCCEEE-EEEc-----CCCeEEEEEECCCCCCCCceeeccCCC-cccEeEeCCCCCEEEEee
Confidence 012346899999999988 5542 35899999885 3432 22222222 347789999999997766
Q ss_pred cCCCCCCCCeEEEEeCC--CeeEEE--EEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeC--CeeEEEeEE
Q 000736 242 DRKSENKCPSIVFYERN--GLERSS--FDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN--NHWYLKYEI 315 (1323)
Q Consensus 242 ~d~~~~~~~~V~~~e~n--Gl~~~~--f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n--~~wylkq~l 315 (1323)
.. ...|.+|+.+ |..... .....+.......++|+|||++|.++.... ++|.+|++.. ....+.+.+
T Consensus 145 ~~-----~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~--~~v~v~~~~~~~~~~~~~~~~ 217 (330)
T PRK11028 145 LK-----EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELN--SSVDVWQLKDPHGEIECVQTL 217 (330)
T ss_pred CC-----CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCC--CEEEEEEEeCCCCCEEEEEEE
Confidence 54 3579999864 221100 001111123467899999999998887622 3899999973 344344444
Q ss_pred EEecCC------cEEEEEccCCCcEEEEEec-CCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeee
Q 000736 316 RYLRRD------GIRFMWHPTKPLQLICWTL-DGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL 388 (1323)
Q Consensus 316 ~~~~~~------~~~v~Wsp~~~~~L~~~~~-~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l 388 (1323)
...+.. +..+.++|++.. +.+.+. ++.+. +|+++. ++..+++... +|
T Consensus 218 ~~~p~~~~~~~~~~~i~~~pdg~~-lyv~~~~~~~I~----v~~i~~---------~~~~~~~~~~----~~-------- 271 (330)
T PRK11028 218 DMMPADFSDTRWAADIHITPDGRH-LYACDRTASLIS----VFSVSE---------DGSVLSFEGH----QP-------- 271 (330)
T ss_pred ecCCCcCCCCccceeEEECCCCCE-EEEecCCCCeEE----EEEEeC---------CCCeEEEeEE----Ee--------
Confidence 322211 135788998764 555543 23332 233321 1222222110 11
Q ss_pred cCCCCEEEEEEecCCCCCEEEEEEC-CCcEEEEECCC
Q 000736 389 KFPTAVTEMAFYSKSSKNCLAAILS-DGCLCVVDLPA 424 (1323)
Q Consensus 389 ~~~~~V~~VaFSpdg~~~~LAs~s~-Dgti~lw~~~~ 424 (1323)
.....+.++|+||| +.|+++.. +++|.+|+++.
T Consensus 272 -~~~~p~~~~~~~dg--~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 272 -TETQPRGFNIDHSG--KYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred -ccccCCceEECCCC--CEEEEEEccCCcEEEEEEcC
Confidence 01133467999999 88887665 89999999863
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.8e-10 Score=129.10 Aligned_cols=286 Identities=19% Similarity=0.247 Sum_probs=185.8
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCC--eEEEeceec-CcEEEEEE-cCCCC-eEEEEeC-CccEEEEeecC-
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGN--ATEVVGRVE-GGVRFISP-SPDGD-LLGVTTG-FGQILVMTHDW- 147 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~--~~e~vg~~~-~~I~~~aw-SPDG~-~LA~~s~-d~tV~l~t~~~- 147 (1323)
.+.+..+.|.+.+..++.++.|+.+.+|+...+ ....+.... ..+..+.+ +|++. .++..+. |+++.+|+...
T Consensus 65 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 144 (466)
T COG2319 65 EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTP 144 (466)
T ss_pred cceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCC
Confidence 468999999999999999999999999999876 344333322 36888888 99998 5555455 89999886542
Q ss_pred -ceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCcee
Q 000736 148 -DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGA 226 (1323)
Q Consensus 148 -d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~ 226 (1323)
....... .|...+..++|+|+|++++ +++. .++.+++|+..++....+..+|...+.
T Consensus 145 ~~~~~~~~----------------~~~~~v~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~ 202 (466)
T COG2319 145 GKLIRTLE----------------GHSESVTSLAFSPDGKLLA-SGSS-----LDGTIKLWDLRTGKPLSTLAGHTDPVS 202 (466)
T ss_pred CeEEEEEe----------------cCcccEEEEEECCCCCEEE-ecCC-----CCCceEEEEcCCCceEEeeccCCCceE
Confidence 2222222 3445678999999999887 4421 268999999977888888888999999
Q ss_pred EEEEccCCC-eEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEe
Q 000736 227 VLEWMPSGA-NIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1323)
Q Consensus 227 slawsPdG~-lIAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~ 304 (1323)
.++|+|+|. .+++++.+ ..|.+|+.. |..... .+..+ ...+ -..|+|++..+++++.|+ .+++|+.
T Consensus 203 ~~~~~~~~~~~~~~~~~d------~~i~~wd~~~~~~~~~-~~~~~-~~~~-~~~~~~~~~~~~~~~~d~---~~~~~~~ 270 (466)
T COG2319 203 SLAFSPDGGLLIASGSSD------GTIRLWDLSTGKLLRS-TLSGH-SDSV-VSSFSPDGSLLASGSSDG---TIRLWDL 270 (466)
T ss_pred EEEEcCCcceEEEEecCC------CcEEEEECCCCcEEee-ecCCC-Ccce-eEeECCCCCEEEEecCCC---cEEEeee
Confidence 999999998 55654554 468899744 322221 12222 2222 228999999999999888 8999999
Q ss_pred eCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCce
Q 000736 305 SNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMY 384 (1323)
Q Consensus 305 ~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~ 384 (1323)
..... ....+..+......+.|+|++.. +.....++. +.+|++........+.
T Consensus 271 ~~~~~-~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~d~~-------------------------~~~~~~~~~~~~~~~~ 323 (466)
T COG2319 271 RSSSS-LLRTLSGHSSSVLSVAFSPDGKL-LASGSSDGT-------------------------VRLWDLETGKLLSSLT 323 (466)
T ss_pred cCCCc-EEEEEecCCccEEEEEECCCCCE-EEEeeCCCc-------------------------EEEEEcCCCceEEEee
Confidence 75432 11112122122266788885544 333333332 2222222111111111
Q ss_pred eeeecCCCCEEEEEEecCCCCCEEEEE-ECCCcEEEEECCCC
Q 000736 385 LFSLKFPTAVTEMAFYSKSSKNCLAAI-LSDGCLCVVDLPAP 425 (1323)
Q Consensus 385 ~~~l~~~~~V~~VaFSpdg~~~~LAs~-s~Dgti~lw~~~~~ 425 (1323)
...|...|..+.|++++ ..++.+ ..|+.+.+|+....
T Consensus 324 --~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~ 361 (466)
T COG2319 324 --LKGHEGPVSSLSFSPDG--SLLVSGGSDDGTIRLWDLRTG 361 (466)
T ss_pred --ecccCCceEEEEECCCC--CEEEEeecCCCcEEeeecCCC
Confidence 12345568899994342 355555 68899999998753
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.1e-14 Score=165.91 Aligned_cols=228 Identities=11% Similarity=0.142 Sum_probs=169.4
Q ss_pred eeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEE
Q 000736 23 LQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLH 102 (1323)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw 102 (1323)
+.++-+..-+..+..+.++...-+|..+ +- +.+.. +.+| ...|-++.|+++-..|+.|+.+|+|++|
T Consensus 31 v~~lk~~~s~r~~~~Gg~~~k~~L~~i~---kp--~~i~S----~~~h----espIeSl~f~~~E~LlaagsasgtiK~w 97 (825)
T KOG0267|consen 31 VGCLKIRKSSRSLVTGGEDEKVNLWAIG---KP--NAITS----LTGH----ESPIESLTFDTSERLLAAGSASGTIKVW 97 (825)
T ss_pred hceeeeeccceeeccCCCceeecccccc---CC--chhhe----eecc----CCcceeeecCcchhhhcccccCCceeee
Confidence 3444444445566666667766667662 11 11211 4444 3579999999999999999999999999
Q ss_pred eCCCCe-EEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEE
Q 000736 103 SVDGNA-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISW 181 (1323)
Q Consensus 103 ~~~~~~-~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isW 181 (1323)
|+...+ +..+..|...+..+.|+|=|++.|.++.|..+++|+.-. .-+.+. |.+|...+..+.|
T Consensus 98 DleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk----~Gc~~~-----------~~s~~~vv~~l~l 162 (825)
T KOG0267|consen 98 DLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK----KGCSHT-----------YKSHTRVVDVLRL 162 (825)
T ss_pred ehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhc----cCceee-----------ecCCcceeEEEee
Confidence 998754 343334577889999999999999999999998875221 111111 2245566788999
Q ss_pred ecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCee
Q 000736 182 RGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE 261 (1323)
Q Consensus 182 spDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~ 261 (1323)
+|||+++| ++ +.|.+++|||...|++...++.|.+.+.++.|.|.--++|+|+.|. +|+||+..
T Consensus 163 sP~Gr~v~-~g------~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~------tv~f~dle--- 226 (825)
T KOG0267|consen 163 SPDGRWVA-SG------GEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDR------TVRFWDLE--- 226 (825)
T ss_pred cCCCceee-cc------CCcceeeeecccccccccccccccccccccccCchhhhhccCCCCc------eeeeeccc---
Confidence 99999999 65 3469999999989999999999999999999999999999999864 69999853
Q ss_pred EEEEEec-cCCCCcEEEEEEccCCCeeEEEEccC
Q 000736 262 RSSFDIN-EQIDSTVELLKWNCMSDLLAAVVRFE 294 (1323)
Q Consensus 262 ~~~f~l~-~~~~~~V~~laWSpDg~~LA~~~~d~ 294 (1323)
..+..-. .+....|.+++|+|||..+++|....
T Consensus 227 tfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 227 TFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 1121111 23356799999999999999987664
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-12 Score=141.07 Aligned_cols=242 Identities=14% Similarity=0.133 Sum_probs=176.0
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1323)
.+.++.|-|-..+|.++|.|+.+..+|.+..+-+.. ++- |.....|.+|.|+|.|++|++|+.--+++|
T Consensus 174 evn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA---------~K~--~qd~~~vrsiSfHPsGefllvgTdHp~~rl 242 (430)
T KOG0640|consen 174 EVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRA---------FKV--FQDTEPVRSISFHPSGEFLLVGTDHPTLRL 242 (430)
T ss_pred cccceeecchhheEEeccCCCeEEEEecccHHHHHH---------HHH--hhccceeeeEeecCCCceEEEecCCCceeE
Confidence 577888889899999999999999999842111111 111 222457999999999999999999999999
Q ss_pred EeCCCCeEEE----eceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCC-CCe
Q 000736 102 HSVDGNATEV----VGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSF-SFK 176 (1323)
Q Consensus 102 w~~~~~~~e~----vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~-~~i 176 (1323)
||++|-++-. -..|.++|+++.+||.|++-+++|.||.|++| |-++..++.+.. .+|+ ..|
T Consensus 243 Ydv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~Iklw----DGVS~rCv~t~~----------~AH~gsev 308 (430)
T KOG0640|consen 243 YDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLW----DGVSNRCVRTIG----------NAHGGSEV 308 (430)
T ss_pred EeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEee----ccccHHHHHHHH----------hhcCCcee
Confidence 9999866532 22468899999999999999999999999885 555555544332 0222 357
Q ss_pred EEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecc--CCCc---eeEEEEccCCCeEEEEecCCCCCCCCe
Q 000736 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL--KAFM---GAVLEWMPSGANIAAVYDRKSENKCPS 251 (1323)
Q Consensus 177 ~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~--~~~~---v~slawsPdG~lIAs~s~d~~~~~~~~ 251 (1323)
++..|.-||+|+. +| +.|.++++|...+|..+....+ ..|. -..-.|+..-.++...... ...
T Consensus 309 cSa~Ftkn~kyiL-sS------G~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEa-----s~s 376 (430)
T KOG0640|consen 309 CSAVFTKNGKYIL-SS------GKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEA-----SNS 376 (430)
T ss_pred eeEEEccCCeEEe-ec------CCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccc-----cCc
Confidence 8999999999998 55 3468999999999998876443 2222 1334455555555444322 245
Q ss_pred EEEEe-CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee
Q 000736 252 IVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1323)
Q Consensus 252 V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~ 305 (1323)
+.-|| ||+.+... +...+.+.|..+.-||.+..+.+++.|. ..++|...
T Consensus 377 lcsWdaRtadr~~l--~slgHn~a~R~i~HSP~~p~FmTcsdD~---raRFWyrr 426 (430)
T KOG0640|consen 377 LCSWDARTADRVAL--LSLGHNGAVRWIVHSPVEPAFMTCSDDF---RARFWYRR 426 (430)
T ss_pred eeeccccchhhhhh--cccCCCCCceEEEeCCCCCceeeecccc---eeeeeeec
Confidence 77787 66655443 2334567899999999999999999998 89999754
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-11 Score=150.57 Aligned_cols=232 Identities=15% Similarity=0.119 Sum_probs=135.6
Q ss_pred CEEEEEEecCCCEEE---EEeCCC--cEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeC-CccEEEEeecCcee
Q 000736 77 SITAFDYLMEKEALI---VGTSSG--LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG-FGQILVMTHDWDLL 150 (1323)
Q Consensus 77 ~V~~v~~spdg~~La---~as~dG--~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~-d~tV~l~t~~~d~~ 150 (1323)
.+.+=.|||||+.++ +...+| .|.+.++++++...+....+.....+|||||+.||..+. +|.-.+|...|+..
T Consensus 186 ~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~ 265 (428)
T PRK01029 186 LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLE 265 (428)
T ss_pred CcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecc
Confidence 456679999998644 334444 577788888776666666777788999999999998864 33322332223321
Q ss_pred eeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECC--CCceeeeeccCCCceeEE
Q 000736 151 YENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD--SGTLQASSELKAFMGAVL 228 (1323)
Q Consensus 151 ~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~--~G~l~~t~e~~~~~v~sl 228 (1323)
.... .....++. +........+|||||++||+++..+ +...|.+++.. .+.... .....+.+...
T Consensus 266 ~g~~----g~~~~lt~----~~~~~~~~p~wSPDG~~Laf~s~~~----g~~~ly~~~~~~~g~~~~~-lt~~~~~~~~p 332 (428)
T PRK01029 266 TGAI----GKPRRLLN----EAFGTQGNPSFSPDGTRLVFVSNKD----GRPRIYIMQIDPEGQSPRL-LTKKYRNSSCP 332 (428)
T ss_pred cCCC----CcceEeec----CCCCCcCCeEECCCCCEEEEEECCC----CCceEEEEECcccccceEE-eccCCCCccce
Confidence 1000 00001110 0112235689999999998554321 22345555542 222222 22233455788
Q ss_pred EEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCe
Q 000736 229 EWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1323)
Q Consensus 229 awsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~ 308 (1323)
+|||||+.||.++.+.+ ...|.+|+..+..... +.. ....+....|||||+.|+....+.....|.+|++.+..
T Consensus 333 ~wSPDG~~Laf~~~~~g---~~~I~v~dl~~g~~~~--Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 333 AWSPDGKKIAFCSVIKG---VRQICVYDLATGRDYQ--LTT-SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred eECCCCCEEEEEEcCCC---CcEEEEEECCCCCeEE--ccC-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 99999999998876432 4578899976544332 221 12356789999999999876655434468888877654
Q ss_pred eEEEeEEEEecCCcEEEEEccC
Q 000736 309 WYLKYEIRYLRRDGIRFMWHPT 330 (1323)
Q Consensus 309 wylkq~l~~~~~~~~~v~Wsp~ 330 (1323)
. ..+...........|+|-
T Consensus 407 ~---~~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 407 T---RKIVIGSGEKRFPSWGAF 425 (428)
T ss_pred E---EEeecCCCcccCceecCC
Confidence 3 122211112245677764
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-12 Score=157.98 Aligned_cols=215 Identities=15% Similarity=0.135 Sum_probs=139.6
Q ss_pred ceeEEeeecCCCEEEEEeCC---CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEe-CCC
Q 000736 22 ILQFSALDIEQNRLFFASSA---NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT-SSG 97 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~---~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as-~dG 97 (1323)
.+...+|.+|++.|++++.+ ..|+.||+ .+++.. .+.. +. +...+++|||||+.|++++ .+|
T Consensus 205 ~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl--~tg~~~-~l~~----~~-------g~~~~~~wSPDG~~La~~~~~~g 270 (429)
T PRK01742 205 PLMSPAWSPDGSKLAYVSFENKKSQLVVHDL--RSGARK-VVAS----FR-------GHNGAPAFSPDGSRLAFASSKDG 270 (429)
T ss_pred ccccceEcCCCCEEEEEEecCCCcEEEEEeC--CCCceE-EEec----CC-------CccCceeECCCCCEEEEEEecCC
Confidence 57788999999999988753 36999999 454321 1111 11 2345789999999999875 688
Q ss_pred cEEEE--eCCCCeEEEeceecCcEEEEEEcCCCCeEEEEe-CCccEEEEeecCceeeeeeecccCCCceeccCccccCCC
Q 000736 98 LLLLH--SVDGNATEVVGRVEGGVRFISPSPDGDLLGVTT-GFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1323)
Q Consensus 98 ~I~lw--~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s-~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~ 174 (1323)
.+.|| |.+++.+..+..+...+.+.+|||||+.|+.++ .++...+|..+-+.-....+ ++..
T Consensus 271 ~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l---------------~~~~ 335 (429)
T PRK01742 271 VLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV---------------GGRG 335 (429)
T ss_pred cEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe---------------cCCC
Confidence 76654 667766654444456688999999999988876 46777776432110000011 0111
Q ss_pred CeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEE
Q 000736 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1323)
Q Consensus 175 ~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~ 254 (1323)
..++|+|||++|| ..+ .++ +.+||..+|+........ ...+++|+|||++|++++.+.+ ...+.+
T Consensus 336 --~~~~~SpDG~~ia-~~~------~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~---~~~l~~ 400 (429)
T PRK01742 336 --YSAQISADGKTLV-MIN------GDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGL---GKVLQL 400 (429)
T ss_pred --CCccCCCCCCEEE-EEc------CCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCC---ceEEEE
Confidence 3578999999998 442 124 445898788765443332 3367899999999999987543 223445
Q ss_pred EeCCCeeEEEEEeccCCCCcEEEEEEccC
Q 000736 255 YERNGLERSSFDINEQIDSTVELLKWNCM 283 (1323)
Q Consensus 255 ~e~nGl~~~~f~l~~~~~~~V~~laWSpD 283 (1323)
++.+|..... ++.+ ++.+...+|||-
T Consensus 401 ~~~~G~~~~~--l~~~-~g~~~~p~wsp~ 426 (429)
T PRK01742 401 VSADGRFKAR--LPGS-DGQVKFPAWSPY 426 (429)
T ss_pred EECCCCceEE--ccCC-CCCCCCcccCCC
Confidence 5667755443 3322 456889999983
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.3e-12 Score=147.39 Aligned_cols=279 Identities=20% Similarity=0.245 Sum_probs=184.5
Q ss_pred ccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCe--EEEEecCC-
Q 000736 168 ELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGAN--IAAVYDRK- 244 (1323)
Q Consensus 168 qf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~l--IAs~s~d~- 244 (1323)
-|.+|.+.+.+|+-.|-|.+|| +|+ .|++||||...||.++.+.. .++.|.+|+|+|.+++ ||++-...
T Consensus 395 vyrGHtg~Vr~iSvdp~G~wla-sGs------dDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~ 466 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDPSGEWLA-SGS------DDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECV 466 (733)
T ss_pred eEeccCCeEEEEEecCCcceee-ecC------CCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCce
Confidence 4559999999999999999999 664 46999999999999999876 6778999999999873 55442210
Q ss_pred ---------------C----------CCCCCeEEEEeCCCeeEEE--EEeccCCCCcEEEEEEccCCCeeEEEEccCCCC
Q 000736 245 ---------------S----------ENKCPSIVFYERNGLERSS--FDINEQIDSTVELLKWNCMSDLLAAVVRFEEYD 297 (1323)
Q Consensus 245 ---------------~----------~~~~~~V~~~e~nGl~~~~--f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~ 297 (1323)
+ ......|+.|.+..+...+ ..+...+...|.+|.|+-+|.+||+.+.++...
T Consensus 467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~ 546 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNK 546 (733)
T ss_pred EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcc
Confidence 0 0112356677654221111 122222345799999999999999999876545
Q ss_pred eEEEEEeeCCeeEEEeEEEEecCC--cEEEEEccCCCcEEEEEecCCcEEEEEEE-------------E--e--eeeCCC
Q 000736 298 SVKICFFSNNHWYLKYEIRYLRRD--GIRFMWHPTKPLQLICWTLDGQITTYNFI-------------W--T--TAVMEN 358 (1323)
Q Consensus 298 ~V~LW~~~n~~wylkq~l~~~~~~--~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~-------------~--~--~~~~d~ 358 (1323)
.|-|.+++... .| ..|.... +..+.|||..+. |.+.|+ ..+.+|++. | . +.+.+.
T Consensus 547 ~VliHQLSK~~---sQ-~PF~kskG~vq~v~FHPs~p~-lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GD 620 (733)
T KOG0650|consen 547 SVLIHQLSKRK---SQ-SPFRKSKGLVQRVKFHPSKPY-LFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGD 620 (733)
T ss_pred eEEEEeccccc---cc-CchhhcCCceeEEEecCCCce-EEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCC
Confidence 78888776421 12 3343222 378999999986 667775 456666553 1 2 224444
Q ss_pred eeEEEEeCCEEEEeecCCcCCCCCceeeeec-CCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCC-------CC--cc
Q 000736 359 STALVIDGSKILVTPLSLSLMPPPMYLFSLK-FPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA-------PD--ML 428 (1323)
Q Consensus 359 ~~v~viDg~~l~lt~l~~~~vPppm~~~~l~-~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~-------~~--~~ 428 (1323)
.+++..-.+++.+.++....-| .+++. |...|.+|+|++.- .++|+++.||++.++--.- +. .+
T Consensus 621 nli~gs~d~k~~WfDldlsskP----yk~lr~H~~avr~Va~H~ry--PLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPl 694 (733)
T KOG0650|consen 621 NLILGSYDKKMCWFDLDLSSKP----YKTLRLHEKAVRSVAFHKRY--PLFASGSDDGTVIVFHGMVYNDLLQNPLIVPL 694 (733)
T ss_pred eEEEecCCCeeEEEEcccCcch----hHHhhhhhhhhhhhhhcccc--ceeeeecCCCcEEEEeeeeehhhhcCCceEee
Confidence 5555555666777777665432 12343 67889999999998 8999999999999986421 00 01
Q ss_pred ccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCeeEEE
Q 000736 429 EDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFR 476 (1323)
Q Consensus 429 ~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~ 476 (1323)
..+.||.. .....|.+..|.|..-.|.+++.+ +++.+|
T Consensus 695 K~L~gH~~--------~~~~gVLd~~wHP~qpWLfsAGAd--~tirlf 732 (733)
T KOG0650|consen 695 KRLRGHEK--------TNDLGVLDTIWHPRQPWLFSAGAD--GTIRLF 732 (733)
T ss_pred eeccCcee--------ecccceEeecccCCCceEEecCCC--ceEEee
Confidence 11222211 112268888999988877776554 455554
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.8e-12 Score=145.52 Aligned_cols=294 Identities=16% Similarity=0.104 Sum_probs=188.6
Q ss_pred EEEEeCCCcEEEEeCCCCeE-EEecee--cCcEEEEEEcCCCCeEEEE--eCCccEEEEeecCceeeeeeecccC--CCc
Q 000736 90 LIVGTSSGLLLLHSVDGNAT-EVVGRV--EGGVRFISPSPDGDLLGVT--TGFGQILVMTHDWDLLYENPLEELA--EGF 162 (1323)
Q Consensus 90 La~as~dG~I~lw~~~~~~~-e~vg~~--~~~I~~~awSPDG~~LA~~--s~d~tV~l~t~~~d~~~e~~l~~~~--~~~ 162 (1323)
|-++|...+++|||...... .++-++ +.||.++.|+..-. |+++ ++|..|.+|-+++. .-+++..... +..
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~-~~~Vp~~~k~~gd~~ 82 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGK-TPEVPRVRKLTGDNA 82 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCC-CCccceeeccccchH
Confidence 45567777899999875332 122222 45799999998853 4444 67888999987765 3333332221 111
Q ss_pred eeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEec
Q 000736 163 DVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYD 242 (1323)
Q Consensus 163 ~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~ 242 (1323)
+ -+.++++| .|++ ++ +..++|+|||...--++..+..|...|..+.++-.-.+||+++.
T Consensus 83 ~-----------Cv~~~s~S---~y~~-sg------G~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~ 141 (673)
T KOG4378|consen 83 F-----------CVACASQS---LYEI-SG------GQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSD 141 (673)
T ss_pred H-----------HHhhhhcc---eeee-cc------CcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEecc
Confidence 1 12334444 6777 44 23589999999544455567788899999999999999999988
Q ss_pred CCCCCCCCeEEEEe-CCCeeEEEEEeccCCCCcEEEEEEccCCCee-EEEEccCCCCeEEEEEeeCCeeEEEeEEEEecC
Q 000736 243 RKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLL-AAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRR 320 (1323)
Q Consensus 243 d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~L-A~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~ 320 (1323)
. ++|.+.. ..+.+..+|..+ ....|.-|.+||-.+.| .+++.++ +|.|||++....|... ...| .
T Consensus 142 g------Gdiiih~~~t~~~tt~f~~~--sgqsvRll~ys~skr~lL~~asd~G---~VtlwDv~g~sp~~~~-~~~H-s 208 (673)
T KOG4378|consen 142 G------GDIIIHGTKTKQKTTTFTID--SGQSVRLLRYSPSKRFLLSIASDKG---AVTLWDVQGMSPIFHA-SEAH-S 208 (673)
T ss_pred C------CcEEEEecccCccccceecC--CCCeEEEeecccccceeeEeeccCC---eEEEEeccCCCcccch-hhhc-c
Confidence 4 5677776 456666666553 23467899999998865 5566667 9999999864322100 0011 2
Q ss_pred Cc-EEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEE
Q 000736 321 DG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAF 399 (1323)
Q Consensus 321 ~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~~~~~V~~VaF 399 (1323)
.+ ..++|+|.+...|+...-|-.+.. .+.+-. -+...|.-+.+...|+|
T Consensus 209 AP~~gicfspsne~l~vsVG~Dkki~~-------------------------yD~~s~-----~s~~~l~y~~Plstvaf 258 (673)
T KOG4378|consen 209 APCRGICFSPSNEALLVSVGYDKKINI-------------------------YDIRSQ-----ASTDRLTYSHPLSTVAF 258 (673)
T ss_pred CCcCcceecCCccceEEEecccceEEE-------------------------eecccc-----cccceeeecCCcceeee
Confidence 33 668899988765555444444433 222211 01113344567789999
Q ss_pred ecCCCCCEEEEEECCCcEEEEECCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEE
Q 000736 400 YSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLL 462 (1323)
Q Consensus 400 Spdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~ll 462 (1323)
+++| .+|++|++.|.|..||+.....+ ..+. -.+...|..++|-+..++|
T Consensus 259 ~~~G--~~L~aG~s~G~~i~YD~R~~k~P-------v~v~----sah~~sVt~vafq~s~tvl 308 (673)
T KOG4378|consen 259 SECG--TYLCAGNSKGELIAYDMRSTKAP-------VAVR----SAHDASVTRVAFQPSPTVL 308 (673)
T ss_pred cCCc--eEEEeecCCceEEEEecccCCCC-------ceEe----eecccceeEEEeeecceee
Confidence 9999 99999999999999998652211 1111 1234579999999987544
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-11 Score=150.62 Aligned_cols=205 Identities=12% Similarity=0.057 Sum_probs=133.5
Q ss_pred cEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeC---CccEEEEeecCceeeeeeecccCCCceeccCccccCCC
Q 000736 98 LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG---FGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1323)
Q Consensus 98 ~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~---d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~ 174 (1323)
.|.+||.++.....+..+...|.+.+|||||+.||.++. +.+|.+|+...... ..+. .+.+
T Consensus 183 ~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~--------------~~~g 246 (435)
T PRK05137 183 RLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--ELVG--------------NFPG 246 (435)
T ss_pred EEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE--EEee--------------cCCC
Confidence 688899888766544455778999999999999999873 45677765321111 1111 1123
Q ss_pred CeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEE
Q 000736 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1323)
Q Consensus 175 ~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~ 254 (1323)
.+...+|||||+.||.+.+. .+...|.+||..+|.+... ..+.+.....+|+|||+.||.+++... ...|.+
T Consensus 247 ~~~~~~~SPDG~~la~~~~~----~g~~~Iy~~d~~~~~~~~L-t~~~~~~~~~~~spDG~~i~f~s~~~g---~~~Iy~ 318 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQ----GGNTDIYTMDLRSGTTTRL-TDSPAIDTSPSYSPDGSQIVFESDRSG---SPQLYV 318 (435)
T ss_pred cccCcEECCCCCEEEEEEec----CCCceEEEEECCCCceEEc-cCCCCccCceeEcCCCCEEEEEECCCC---CCeEEE
Confidence 44678999999988734332 2345788889977766543 335556678999999999998875422 356878
Q ss_pred EeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCc
Q 000736 255 YERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPL 333 (1323)
Q Consensus 255 ~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~ 333 (1323)
++.+|.....++. +...+...+|||||+.||....+.....|.+|+..+... ..+.. ........|+|++..
T Consensus 319 ~d~~g~~~~~lt~---~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~---~~lt~-~~~~~~p~~spDG~~ 390 (435)
T PRK05137 319 MNADGSNPRRISF---GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE---RILTS-GFLVEGPTWAPNGRV 390 (435)
T ss_pred EECCCCCeEEeec---CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce---EeccC-CCCCCCCeECCCCCE
Confidence 8877644333221 123466789999999999987654333688888754322 11211 111255789998865
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.9e-12 Score=149.11 Aligned_cols=259 Identities=17% Similarity=0.185 Sum_probs=168.3
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEe-CCCCeEEEeceecCcEEEEEE----c----CCCCeEEEEeCCccEEEEeecC
Q 000736 77 SITAFDYLMEKEALIVGTSSGLLLLHS-VDGNATEVVGRVEGGVRFISP----S----PDGDLLGVTTGFGQILVMTHDW 147 (1323)
Q Consensus 77 ~V~~v~~spdg~~La~as~dG~I~lw~-~~~~~~e~vg~~~~~I~~~aw----S----PDG~~LA~~s~d~tV~l~t~~~ 147 (1323)
.|.++.|+..-+.+-++ +|..+.+|+ +.+...++..-.++-|...-+ | -..+.++++|.||.+.+.++..
T Consensus 16 ~vc~v~w~~~eei~~~~-dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~k~~ 94 (737)
T KOG1524|consen 16 KVCCVDWSSNEEIYFVS-DDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILNKSA 94 (737)
T ss_pred eEEeecccccceEEEec-cCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEecccc
Confidence 56789999887666554 556666654 433222211111111111100 0 1236799999999999988876
Q ss_pred ceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeE
Q 000736 148 DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAV 227 (1323)
Q Consensus 148 d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~s 227 (1323)
.+-..+. +|.+.+.+-.|+|||.=|. ++ ++|+.||+|++ +|-+.++.......|.+
T Consensus 95 rVE~sv~----------------AH~~A~~~gRW~~dGtgLl-t~------GEDG~iKiWSr-sGMLRStl~Q~~~~v~c 150 (737)
T KOG1524|consen 95 RVERSIS----------------AHAAAISSGRWSPDGAGLL-TA------GEDGVIKIWSR-SGMLRSTVVQNEESIRC 150 (737)
T ss_pred hhhhhhh----------------hhhhhhhhcccCCCCceee-ee------cCCceEEEEec-cchHHHHHhhcCceeEE
Confidence 6543333 3456678889999999888 43 45799999999 99999998777788999
Q ss_pred EEEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCC
Q 000736 228 LEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1323)
Q Consensus 228 lawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~ 307 (1323)
++|-|+.+.|.-++.+. ..|+=.-.|-.. ...+ .|++-|.++.|||.+.++|+|++|- ..++||....
T Consensus 151 ~~W~p~S~~vl~c~g~h-----~~IKpL~~n~k~---i~Wk-AHDGiiL~~~W~~~s~lI~sgGED~---kfKvWD~~G~ 218 (737)
T KOG1524|consen 151 ARWAPNSNSIVFCQGGH-----ISIKPLAANSKI---IRWR-AHDGLVLSLSWSTQSNIIASGGEDF---RFKIWDAQGA 218 (737)
T ss_pred EEECCCCCceEEecCCe-----EEEeecccccce---eEEe-ccCcEEEEeecCccccceeecCCce---eEEeecccCc
Confidence 99999999888776531 223222233211 0111 2467799999999999999999998 8999997642
Q ss_pred eeEEEeEEEEecCCc-EEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceee
Q 000736 308 HWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLF 386 (1323)
Q Consensus 308 ~wylkq~l~~~~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~ 386 (1323)
.-|-. .. +..+ ++++|.||.. ..+|+- . +++ |..
T Consensus 219 ~Lf~S---~~-~ey~ITSva~npd~~--~~v~S~-----------n---------------t~R---~~~---------- 253 (737)
T KOG1524|consen 219 NLFTS---AA-EEYAITSVAFNPEKD--YLLWSY-----------N---------------TAR---FSS---------- 253 (737)
T ss_pred ccccC---Ch-hccceeeeeeccccc--eeeeee-----------e---------------eee---ecC----------
Confidence 21110 01 1223 8999999943 234331 0 111 111
Q ss_pred eecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEE
Q 000736 387 SLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1323)
Q Consensus 387 ~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~ 421 (1323)
.-.+.|..++||||| ..+|.+++.|.+.+--
T Consensus 254 --p~~GSifnlsWS~DG--TQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 254 --PRVGSIFNLSWSADG--TQATCGTSTGQLIVAY 284 (737)
T ss_pred --CCccceEEEEEcCCC--ceeeccccCceEEEee
Confidence 123678999999999 8999999999876543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-09 Score=130.59 Aligned_cols=69 Identities=19% Similarity=0.157 Sum_probs=62.0
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEee
Q 000736 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH 145 (1323)
Q Consensus 77 ~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~ 145 (1323)
.++++.|+|+--.|+.|.+-|.+.+|+.++.+.. .+..|...|..+.|||||..|.++..-|.|.+|.-
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~ 130 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRY 130 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEe
Confidence 6788999999999999999999999999887664 55567889999999999999999999999999964
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.7e-12 Score=144.29 Aligned_cols=209 Identities=14% Similarity=0.044 Sum_probs=150.5
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeee
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~ 153 (1323)
.+.|.+++-+|+|.+|+.|+..|.|.+|.+.+|.+- +...|-..|+|+.||-||..+.+||.||.|.+|.-. +.+...
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~-~lv~a~ 159 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLT-DLVSAD 159 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEE-eecccc
Confidence 468999999999999999999999999999998753 556778899999999999999999999999998532 111100
Q ss_pred eecccCCCceeccCccccCCCCeEEEEEecC--CcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEc
Q 000736 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGD--GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM 231 (1323)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~i~~isWspD--G~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slaws 231 (1323)
. ....++ .-.|+.|.-.|+.+--.+- ..++. ++| .|+++|+||...|.++.+.. .+..+.+++..
T Consensus 160 ~---~~~~~p--~~~f~~HtlsITDl~ig~Gg~~~rl~-TaS------~D~t~k~wdlS~g~LLlti~-fp~si~av~lD 226 (476)
T KOG0646|consen 160 N---DHSVKP--LHIFSDHTLSITDLQIGSGGTNARLY-TAS------EDRTIKLWDLSLGVLLLTIT-FPSSIKAVALD 226 (476)
T ss_pred c---CCCccc--eeeeccCcceeEEEEecCCCccceEE-Eec------CCceEEEEEeccceeeEEEe-cCCcceeEEEc
Confidence 0 000011 1235566666666654433 34666 343 47999999998899888754 45567999999
Q ss_pred cCCCeEEEEecCCCCCCCCeEEEEeCCCee---E----EEE--------EeccCC-CCcEEEEEEccCCCeeEEEEccCC
Q 000736 232 PSGANIAAVYDRKSENKCPSIVFYERNGLE---R----SSF--------DINEQI-DSTVELLKWNCMSDLLAAVVRFEE 295 (1323)
Q Consensus 232 PdG~lIAs~s~d~~~~~~~~V~~~e~nGl~---~----~~f--------~l~~~~-~~~V~~laWSpDg~~LA~~~~d~~ 295 (1323)
|.+..+..|+.++ .|-+...+++. . ..+ .+.++. +..|.+|+.|-||++|++|+.|+
T Consensus 227 pae~~~yiGt~~G------~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg- 299 (476)
T KOG0646|consen 227 PAERVVYIGTEEG------KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDG- 299 (476)
T ss_pred ccccEEEecCCcc------eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCC-
Confidence 9999999998863 34433322211 1 111 111221 23799999999999999999999
Q ss_pred CCeEEEEEeeC
Q 000736 296 YDSVKICFFSN 306 (1323)
Q Consensus 296 ~~~V~LW~~~n 306 (1323)
.|.+||...
T Consensus 300 --~VcvWdi~S 308 (476)
T KOG0646|consen 300 --KVCVWDIYS 308 (476)
T ss_pred --CEEEEecch
Confidence 899999876
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.3e-12 Score=153.46 Aligned_cols=219 Identities=15% Similarity=0.180 Sum_probs=142.1
Q ss_pred ceeEEeeecCCCEEEEEeC---CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEE-eCCC
Q 000736 22 ILQFSALDIEQNRLFFASS---ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVG-TSSG 97 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~---~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~a-s~dG 97 (1323)
.+...+|.+|++.|++++. ...|+.||+ .+++. .. +..+ .+...+.+|||||+.|+.+ +.+|
T Consensus 205 ~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl--~~g~~-~~-------l~~~----~g~~~~~~~SpDG~~l~~~~s~~g 270 (433)
T PRK04922 205 PILSPAWSPDGKKLAYVSFERGRSAIYVQDL--ATGQR-EL-------VASF----RGINGAPSFSPDGRRLALTLSRDG 270 (433)
T ss_pred ccccccCCCCCCEEEEEecCCCCcEEEEEEC--CCCCE-EE-------eccC----CCCccCceECCCCCEEEEEEeCCC
Confidence 5677899999999999874 346999999 44442 11 1111 1234578999999988754 5566
Q ss_pred --cEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeC-Ccc--EEEEeecCceeeeeeecccCCCceeccCccccC
Q 000736 98 --LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG-FGQ--ILVMTHDWDLLYENPLEELAEGFDVHEPELSSS 172 (1323)
Q Consensus 98 --~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~-d~t--V~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~ 172 (1323)
+|.+||+.++.+..+..+.......+|||||+.|++++. +|. |.+|+....... .+. +.+
T Consensus 271 ~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~--~lt------------~~g- 335 (433)
T PRK04922 271 NPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE--RLT------------FQG- 335 (433)
T ss_pred CceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE--Eee------------cCC-
Confidence 599999998877655444444567899999999998875 344 433322111111 111 111
Q ss_pred CCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeE
Q 000736 173 FSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1323)
Q Consensus 173 ~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V 252 (1323)
.....++|||||+++|.++. + ++...|.+||..+|+...... .+...+.+|+|||+.|+.++.+.. ...|
T Consensus 336 -~~~~~~~~SpDG~~Ia~~~~-~---~~~~~I~v~d~~~g~~~~Lt~--~~~~~~p~~spdG~~i~~~s~~~g---~~~L 405 (433)
T PRK04922 336 -NYNARASVSPDGKKIAMVHG-S---GGQYRIAVMDLSTGSVRTLTP--GSLDESPSFAPNGSMVLYATREGG---RGVL 405 (433)
T ss_pred -CCccCEEECCCCCEEEEEEC-C---CCceeEEEEECCCCCeEECCC--CCCCCCceECCCCCEEEEEEecCC---ceEE
Confidence 12246899999999994332 2 234579999997787654332 224567899999999988876532 4567
Q ss_pred EEEeCCCeeEEEEEeccCCCCcEEEEEEcc
Q 000736 253 VFYERNGLERSSFDINEQIDSTVELLKWNC 282 (1323)
Q Consensus 253 ~~~e~nGl~~~~f~l~~~~~~~V~~laWSp 282 (1323)
..++.+|..... +..+ .+.+...+|||
T Consensus 406 ~~~~~~g~~~~~--l~~~-~g~~~~p~wsp 432 (433)
T PRK04922 406 AAVSTDGRVRQR--LVSA-DGEVREPAWSP 432 (433)
T ss_pred EEEECCCCceEE--cccC-CCCCCCCccCC
Confidence 788887754332 3222 34577889997
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=8e-12 Score=152.25 Aligned_cols=221 Identities=17% Similarity=0.162 Sum_probs=141.0
Q ss_pred ceeEEeeecCCCEEEEEeCC---CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEE-EeCCC
Q 000736 22 ILQFSALDIEQNRLFFASSA---NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIV-GTSSG 97 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~---~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~-as~dG 97 (1323)
.+...+|.+|++.|++++.. ..|+.||+ .+++. .. +... .+.+.+.+|||||+.|+. .+.+|
T Consensus 197 ~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl--~~g~~-~~-------l~~~----~g~~~~~~~SPDG~~la~~~~~~g 262 (427)
T PRK02889 197 PIISPAWSPDGTKLAYVSFESKKPVVYVHDL--ATGRR-RV-------VANF----KGSNSAPAWSPDGRTLAVALSRDG 262 (427)
T ss_pred CcccceEcCCCCEEEEEEccCCCcEEEEEEC--CCCCE-EE-------eecC----CCCccceEECCCCCEEEEEEccCC
Confidence 67788999999999998753 36999999 45542 11 1111 235668999999999885 56778
Q ss_pred cEEEE--eCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeC-CccEEEEeecCceeeeeeecccCCCceeccCccccCCC
Q 000736 98 LLLLH--SVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG-FGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1323)
Q Consensus 98 ~I~lw--~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~-d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~ 174 (1323)
...|| |.+++.+..+..+.+.+...+|||||+.|+.++. ++...+|..+-+.-....+. |.+ .
T Consensus 263 ~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt------------~~g--~ 328 (427)
T PRK02889 263 NSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT------------FTG--S 328 (427)
T ss_pred CceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe------------cCC--C
Confidence 76665 5556666555444455677899999999998875 34555553221100000110 111 1
Q ss_pred CeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEE
Q 000736 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1323)
Q Consensus 175 ~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~ 254 (1323)
.....+|||||+++|.++. + ++...|.+||..+|+....... +...+.+|+|||+.|+.++.+.+ ...+.+
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~-~---~g~~~I~v~d~~~g~~~~lt~~--~~~~~p~~spdg~~l~~~~~~~g---~~~l~~ 399 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISR-V---GGAFKLYVQDLATGQVTALTDT--TRDESPSFAPNGRYILYATQQGG---RSVLAA 399 (427)
T ss_pred CcCceEECCCCCEEEEEEc-c---CCcEEEEEEECCCCCeEEccCC--CCccCceECCCCCEEEEEEecCC---CEEEEE
Confidence 2246889999999994432 2 2345799999977776544332 33468899999999998887543 334555
Q ss_pred EeCCCeeEEEEEeccCCCCcEEEEEEcc
Q 000736 255 YERNGLERSSFDINEQIDSTVELLKWNC 282 (1323)
Q Consensus 255 ~e~nGl~~~~f~l~~~~~~~V~~laWSp 282 (1323)
.+.+|..... ++.+ .+.+...+|||
T Consensus 400 ~~~~g~~~~~--l~~~-~g~~~~p~wsp 424 (427)
T PRK02889 400 VSSDGRIKQR--LSVQ-GGDVREPSWGP 424 (427)
T ss_pred EECCCCceEE--eecC-CCCCCCCccCC
Confidence 6667754332 3222 34577889998
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.5e-11 Score=130.46 Aligned_cols=228 Identities=17% Similarity=0.126 Sum_probs=153.2
Q ss_pred eecCcEEEEEEcCC-CCeEEEEeCCccEEEEeecCceeeeeeecccCCCceec---cCccccCCCCeEEEEEec-CCcEE
Q 000736 114 RVEGGVRFISPSPD-GDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVH---EPELSSSFSFKSPISWRG-DGKYF 188 (1323)
Q Consensus 114 ~~~~~I~~~awSPD-G~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs---~tqf~~~~~~i~~isWsp-DG~~l 188 (1323)
.|.++|+++..-|- |+++++|+.||.|.+|+..--.-++..- . ..+++. -..-.+|.-.|.++-|-| |.-.|
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~--l-i~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASG--L-IAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcc--c-eeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 35678898888774 8999999999999997532111011100 0 011110 000014556788999998 44466
Q ss_pred EEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCC---CeEEEEecCCCCCCCCeEEEEeC-CCeeEEE
Q 000736 189 ATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG---ANIAAVYDRKSENKCPSIVFYER-NGLERSS 264 (1323)
Q Consensus 189 Atvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG---~lIAs~s~d~~~~~~~~V~~~e~-nGl~~~~ 264 (1323)
. +|+. |.++||||..|-+....+. ..+.|.+-+|||=. -+||+|.++ ..|+++|. .|.-..
T Consensus 118 t-ssSF------DhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~------~~VrLCDi~SGs~sH- 182 (397)
T KOG4283|consen 118 T-SSSF------DHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRD------VQVRLCDIASGSFSH- 182 (397)
T ss_pred e-cccc------cceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCC------CcEEEEeccCCccee-
Confidence 6 6655 4899999998777666665 56778899999964 489999885 56999995 332211
Q ss_pred EEeccCCCCcEEEEEEccCCC-eeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCc
Q 000736 265 FDINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQ 343 (1323)
Q Consensus 265 f~l~~~~~~~V~~laWSpDg~-~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~ 343 (1323)
+|.+| ...|.++.|||.++ +||+|+.|+ .|+|||+..- + -++.+..+.+
T Consensus 183 -~LsGH-r~~vlaV~Wsp~~e~vLatgsaDg---~irlWDiRra-------------s-----------gcf~~lD~hn- 232 (397)
T KOG4283|consen 183 -TLSGH-RDGVLAVEWSPSSEWVLATGSADG---AIRLWDIRRA-------------S-----------GCFRVLDQHN- 232 (397)
T ss_pred -eeccc-cCceEEEEeccCceeEEEecCCCc---eEEEEEeecc-------------c-----------ceeEEeeccc-
Confidence 34443 56899999999998 689999999 9999997531 0 1122322110
Q ss_pred EEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECC
Q 000736 344 ITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1323)
Q Consensus 344 ~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~ 423 (1323)
++ -||-.. -...|.+.|+.++|+.|| ..+++.+.|..+++|+..
T Consensus 233 ----------------------~k-----------~~p~~~-~n~ah~gkvngla~tSd~--~~l~~~gtd~r~r~wn~~ 276 (397)
T KOG4283|consen 233 ----------------------TK-----------RPPILK-TNTAHYGKVNGLAWTSDA--RYLASCGTDDRIRVWNME 276 (397)
T ss_pred ----------------------Cc-----------cCcccc-ccccccceeeeeeecccc--hhhhhccCccceEEeecc
Confidence 00 012111 133578899999999999 899999999999999986
Q ss_pred CC
Q 000736 424 AP 425 (1323)
Q Consensus 424 ~~ 425 (1323)
..
T Consensus 277 ~G 278 (397)
T KOG4283|consen 277 SG 278 (397)
T ss_pred cC
Confidence 53
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.3e-12 Score=143.03 Aligned_cols=265 Identities=9% Similarity=0.042 Sum_probs=180.1
Q ss_pred ccccCCCCeEEEEEecCC-cEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCC
Q 000736 168 ELSSSFSFKSPISWRGDG-KYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSE 246 (1323)
Q Consensus 168 qf~~~~~~i~~isWspDG-~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~ 246 (1323)
++.+|-++|.+++=.|.- ..+| +++ .||.|+|||..+-.++.+++.|.|+|..|++.- + .+.++++|
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~a-SGs------~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~-~~~tvgdD--- 128 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVA-SGS------CDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-T-SFFTVGDD--- 128 (433)
T ss_pred hccccccccchhhcCcchhhhhh-ccc------cCceEEEEehhhhhhhheeecccCceeeEEecc-c-ceEEecCC---
Confidence 334899999999988876 5677 554 468999999988889999999999999999988 4 45555555
Q ss_pred CCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEE
Q 000736 247 NKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFM 326 (1323)
Q Consensus 247 ~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~ 326 (1323)
.+|+.|-.+|.....+ .+...+..|.=+--+...|+++. .|-|||..-... .+.+....+...++.
T Consensus 129 ---KtvK~wk~~~~p~~ti----lg~s~~~gIdh~~~~~~FaTcGe-----~i~IWD~~R~~P--v~smswG~Dti~svk 194 (433)
T KOG0268|consen 129 ---KTVKQWKIDGPPLHTI----LGKSVYLGIDHHRKNSVFATCGE-----QIDIWDEQRDNP--VSSMSWGADSISSVK 194 (433)
T ss_pred ---cceeeeeccCCcceee----eccccccccccccccccccccCc-----eeeecccccCCc--cceeecCCCceeEEe
Confidence 4699998877432222 12345666766666777888765 489999853211 233333223337788
Q ss_pred EccCCCcEEEEEecCCcEEEEEEE------------------EeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeee
Q 000736 327 WHPTKPLQLICWTLDGQITTYNFI------------------WTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL 388 (1323)
Q Consensus 327 Wsp~~~~~L~~~~~~g~~~~~~~~------------------~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l 388 (1323)
|+|.....|.+...|+.+..++.- |. |.....++.-.+..+...+.+.- -.|.-.+ .
T Consensus 195 fNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~Iswn--PeafnF~~a~ED~nlY~~DmR~l--~~p~~v~-~ 269 (433)
T KOG0268|consen 195 FNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWN--PEAFNFVAANEDHNLYTYDMRNL--SRPLNVH-K 269 (433)
T ss_pred cCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecC--ccccceeeccccccceehhhhhh--cccchhh-c
Confidence 888777666666567777665542 32 22222344445666776666543 2333221 3
Q ss_pred cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecC
Q 000736 389 KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHG 468 (1323)
Q Consensus 389 ~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~ 468 (1323)
.|-+.|.+|+|||.| +-+++++.|.+|+||.....-.-....- ..-..|.++.||-|.+++.+|+++
T Consensus 270 dhvsAV~dVdfsptG--~EfvsgsyDksIRIf~~~~~~SRdiYht-----------kRMq~V~~Vk~S~Dskyi~SGSdd 336 (433)
T KOG0268|consen 270 DHVSAVMDVDFSPTG--QEFVSGSYDKSIRIFPVNHGHSRDIYHT-----------KRMQHVFCVKYSMDSKYIISGSDD 336 (433)
T ss_pred ccceeEEEeccCCCc--chhccccccceEEEeecCCCcchhhhhH-----------hhhheeeEEEEeccccEEEecCCC
Confidence 578899999999999 9999999999999999875211100000 001268899999999999999987
Q ss_pred CCCeeEEEEe
Q 000736 469 PRHSNYFRGA 478 (1323)
Q Consensus 469 ~~~~~~~~~~ 478 (1323)
..+.+|..
T Consensus 337 --~nvRlWka 344 (433)
T KOG0268|consen 337 --GNVRLWKA 344 (433)
T ss_pred --cceeeeec
Confidence 46788864
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1e-12 Score=163.91 Aligned_cols=251 Identities=12% Similarity=0.101 Sum_probs=175.6
Q ss_pred ceeEEeeecCCCE----EEEEeCCCcEEEEecccc-cccccceeeccccccccccCCCCCCEEEEEEecCCC-EEEEEeC
Q 000736 22 ILQFSALDIEQNR----LFFASSANNIYSAQLSSF-QNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKE-ALIVGTS 95 (1323)
Q Consensus 22 ~~~~~~~d~~~~~----l~~~s~~~~i~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~-~La~as~ 95 (1323)
.+..++|-.-++. |.-+.+|++|..||.... .+....-+.+ ...| .+.|.++.|.|.+. .||+|..
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~----~~~h----~G~V~gLDfN~~q~nlLASGa~ 137 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLAT----KSKH----TGPVLGLDFNPFQGNLLASGAD 137 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhh----hccc----CCceeeeeccccCCceeeccCC
Confidence 6777888877665 777788999999999532 1111001111 1112 57899999999887 9999999
Q ss_pred CCcEEEEeCCCCeEE-Eece--ecCcEEEEEEcCC-CCeEEEEeCCccEEEEeec-CceeeeeeecccCCCceeccCccc
Q 000736 96 SGLLLLHSVDGNATE-VVGR--VEGGVRFISPSPD-GDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELS 170 (1323)
Q Consensus 96 dG~I~lw~~~~~~~e-~vg~--~~~~I~~~awSPD-G~~LA~~s~d~tV~l~t~~-~d~~~e~~l~~~~~~~~Vs~tqf~ 170 (1323)
||+|.|||++.-... ..|. ..+.|.+++|+-. ...||+++.+|.+.+|+-. -.++.....+.
T Consensus 138 ~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~------------- 204 (1049)
T KOG0307|consen 138 DGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTP------------- 204 (1049)
T ss_pred CCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCC-------------
Confidence 999999999752221 2322 3467999999864 5779999999999887621 12222221111
Q ss_pred cCCCCeEEEEEecCCcE-EEEeeccccccCCCCEEEEEECC-CCceeeeeccCCCceeEEEEccCC-CeEEEEecCCCCC
Q 000736 171 SSFSFKSPISWRGDGKY-FATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAFMGAVLEWMPSG-ANIAAVYDRKSEN 247 (1323)
Q Consensus 171 ~~~~~i~~isWspDG~~-lAtvss~d~~~~~d~~IrVWd~~-~G~l~~t~e~~~~~v~slawsPdG-~lIAs~s~d~~~~ 247 (1323)
....+..|+|.||+.. ++ +++-| ...-.|++||.+ .-..+.++++|...+-+++|+|.+ .+++|++.|
T Consensus 205 -~~~~~S~l~WhP~~aTql~-~As~d---d~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD---- 275 (1049)
T KOG0307|consen 205 -GRMHCSVLAWHPDHATQLL-VASGD---DSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKD---- 275 (1049)
T ss_pred -CccceeeeeeCCCCceeee-eecCC---CCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCC----
Confidence 1123578999999963 44 45433 345789999943 445666778899899999999998 778888875
Q ss_pred CCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCC-eeEEEEccCCCCeEEEEEeeCCeeE
Q 000736 248 KCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNHWY 310 (1323)
Q Consensus 248 ~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~-~LA~~~~d~~~~~V~LW~~~n~~wy 310 (1323)
++|..|+.| |...++ ++. ...++..+.|+|--- ++|.++-|+ .|.|+.+.+..|+
T Consensus 276 --~~ii~wN~~tgEvl~~--~p~-~~nW~fdv~w~pr~P~~~A~asfdg---kI~I~sl~~~~~~ 332 (1049)
T KOG0307|consen 276 --NRIICWNPNTGEVLGE--LPA-QGNWCFDVQWCPRNPSVMAAASFDG---KISIYSLQGTDTD 332 (1049)
T ss_pred --CCeeEecCCCceEeee--cCC-CCcceeeeeecCCCcchhhhheecc---ceeeeeeecCCcc
Confidence 579999976 333333 232 247899999999655 999999999 8999998765543
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.6e-13 Score=160.06 Aligned_cols=217 Identities=15% Similarity=0.199 Sum_probs=164.3
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEeCCCC-eEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeee
Q 000736 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGN-ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPL 155 (1323)
Q Consensus 77 ~V~~v~~spdg~~La~as~dG~I~lw~~~~~-~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l 155 (1323)
.|..+..-..++.++.|+.|-.+-||...-- .+-.+-.|+++|.|+.|+++..+||.|+.+|+|++|+ ......+
T Consensus 30 av~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wD----leeAk~v 105 (825)
T KOG0267|consen 30 AVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWD----LEEAKIV 105 (825)
T ss_pred hhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeee----hhhhhhh
Confidence 4555555666788888888888888987531 1112334699999999999999999999999998864 4344444
Q ss_pred cccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCC
Q 000736 156 EELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA 235 (1323)
Q Consensus 156 ~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~ 235 (1323)
++.. +|-..+.++.|+|-|.|+| .++. |+.+++||..---+.++..+|.+.+..+.|+|+|+
T Consensus 106 rtLt-----------gh~~~~~sv~f~P~~~~~a-~gSt------dtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr 167 (825)
T KOG0267|consen 106 RTLT-----------GHLLNITSVDFHPYGEFFA-SGST------DTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGR 167 (825)
T ss_pred hhhh-----------ccccCcceeeeccceEEec-cccc------cccceehhhhccCceeeecCCcceeEEEeecCCCc
Confidence 4333 5666789999999999998 6654 47899999865567778888999999999999999
Q ss_pred eEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeE
Q 000736 236 NIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYE 314 (1323)
Q Consensus 236 lIAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~ 314 (1323)
++|++++| +.|++|+. .|....+|.- ++..|.++.|.|-.-+||.|+.|+ +|++|++.+.. .
T Consensus 168 ~v~~g~ed------~tvki~d~~agk~~~ef~~---~e~~v~sle~hp~e~Lla~Gs~d~---tv~f~dletfe-----~ 230 (825)
T KOG0267|consen 168 WVASGGED------NTVKIWDLTAGKLSKEFKS---HEGKVQSLEFHPLEVLLAPGSSDR---TVRFWDLETFE-----V 230 (825)
T ss_pred eeeccCCc------ceeeeeccccccccccccc---ccccccccccCchhhhhccCCCCc---eeeeeccceeE-----E
Confidence 99999885 57999994 4444444432 357899999999999999999999 99999997632 1
Q ss_pred EEEec---CCcEEEEEccCCC
Q 000736 315 IRYLR---RDGIRFMWHPTKP 332 (1323)
Q Consensus 315 l~~~~---~~~~~v~Wsp~~~ 332 (1323)
+.-.. ....+..|+|++.
T Consensus 231 I~s~~~~~~~v~~~~fn~~~~ 251 (825)
T KOG0267|consen 231 ISSGKPETDGVRSLAFNPDGK 251 (825)
T ss_pred eeccCCccCCceeeeecCCce
Confidence 21111 1237888999874
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-11 Score=134.29 Aligned_cols=118 Identities=15% Similarity=0.239 Sum_probs=86.2
Q ss_pred CCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEE
Q 000736 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV 253 (1323)
Q Consensus 174 ~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~ 253 (1323)
+.|.+++|+|+|+.||.+.+ ..++.|.+||. .++...++. ......|.|||+|++||.++.+.. .+.|.
T Consensus 60 ~~I~~~~WsP~g~~favi~g-----~~~~~v~lyd~-~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~---~G~l~ 128 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAVIYG-----SMPAKVTLYDV-KGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNL---NGDLE 128 (194)
T ss_pred CceEEEEECcCCCEEEEEEc-----cCCcccEEEcC-cccEeEeec--CCCceEEEECCCCCEEEEEEccCC---CcEEE
Confidence 45899999999999984433 22469999999 688777764 345688999999999999986432 46799
Q ss_pred EEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccC---CCCeEEEEEeeC
Q 000736 254 FYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE---EYDSVKICFFSN 306 (1323)
Q Consensus 254 ~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~---~~~~V~LW~~~n 306 (1323)
|||.+.... +.......+..++|||||++||++.... -.+.++||+...
T Consensus 129 ~wd~~~~~~----i~~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 129 FWDVRKKKK----ISTFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EEECCCCEE----eeccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 999763211 1111223578999999999999987541 123689999865
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.8e-11 Score=146.54 Aligned_cols=203 Identities=13% Similarity=0.091 Sum_probs=129.7
Q ss_pred CCCEEEEEEecCCCEEEEEeCC---CcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEE-eCCc--cEEEEeecCc
Q 000736 75 GDSITAFDYLMEKEALIVGTSS---GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVT-TGFG--QILVMTHDWD 148 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~d---G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~-s~d~--tV~l~t~~~d 148 (1323)
++.+.+..|||||+.|+..+.+ ..|.+|++++++.+.+....+.+.+.+|||||+.||.. +.+| .|.+|+....
T Consensus 198 ~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~ 277 (430)
T PRK00178 198 REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASR 277 (430)
T ss_pred CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence 3568899999999999877643 35888999988776555545566789999999999865 3444 3544442211
Q ss_pred eeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEE
Q 000736 149 LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVL 228 (1323)
Q Consensus 149 ~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~sl 228 (1323)
... .+.. +.......+|+|||+.++.++.. .+...|.+|+..+|+....... .......
T Consensus 278 ~~~--~lt~--------------~~~~~~~~~~spDg~~i~f~s~~----~g~~~iy~~d~~~g~~~~lt~~-~~~~~~~ 336 (430)
T PRK00178 278 QLS--RVTN--------------HPAIDTEPFWGKDGRTLYFTSDR----GGKPQIYKVNVNGGRAERVTFV-GNYNARP 336 (430)
T ss_pred CeE--Eccc--------------CCCCcCCeEECCCCCEEEEEECC----CCCceEEEEECCCCCEEEeecC-CCCccce
Confidence 111 1111 11223567899999998844321 2345788889877776543221 1223467
Q ss_pred EEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee
Q 000736 229 EWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1323)
Q Consensus 229 awsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~ 305 (1323)
+|||||+.|+..+.... ...|.+++..+..... +.. .......+|||||+.|+..+.+++...+.+++..
T Consensus 337 ~~Spdg~~i~~~~~~~~---~~~l~~~dl~tg~~~~--lt~--~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 337 RLSADGKTLVMVHRQDG---NFHVAAQDLQRGSVRI--LTD--TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred EECCCCCEEEEEEccCC---ceEEEEEECCCCCEEE--ccC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 89999999998876432 3468888865433222 221 1122356899999999998876533356666654
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.6e-11 Score=123.80 Aligned_cols=244 Identities=10% Similarity=0.061 Sum_probs=174.8
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCC---CCCEEEEEEecC----CCEEEEEe
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEP---GDSITAFDYLME----KEALIVGT 94 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~V~~v~~spd----g~~La~as 94 (1323)
.+.|.+|.++++.|..+|.|..|...-.|..+++ +.++++.- .+.|.+++|.-| |..|++++
T Consensus 91 siyc~~ws~~geliatgsndk~ik~l~fn~dt~~-----------~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~g 159 (350)
T KOG0641|consen 91 SIYCTAWSPCGELIATGSNDKTIKVLPFNADTCN-----------ATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAG 159 (350)
T ss_pred cEEEEEecCccCeEEecCCCceEEEEeccccccc-----------ccCcceeeeecCCceeeeEEecCCCcCceEEEecC
Confidence 7889999999999999999996654443223332 22222211 578999999765 45677765
Q ss_pred CCCcEEEEeC--CCCe-EEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCcccc
Q 000736 95 SSGLLLLHSV--DGNA-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSS 171 (1323)
Q Consensus 95 ~dG~I~lw~~--~~~~-~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~ 171 (1323)
.|+-+||-. ..++ +.-...|.+.|.++ +|=+|-++|+++.|+||++|+. ....+....+ +.|++
T Consensus 160 -agdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdl----rv~~~v~~l~-------~~~~~ 226 (350)
T KOG0641|consen 160 -AGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDL----RVNSCVNTLD-------NDFHD 226 (350)
T ss_pred -CCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEee----eccceeeecc-------CcccC
Confidence 466666544 3333 34344457888875 3335889999999999988753 2222222222 22331
Q ss_pred ---CCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCC
Q 000736 172 ---SFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENK 248 (1323)
Q Consensus 172 ---~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~ 248 (1323)
....+..++-.|.|++|| ++- .|..-.+||...|..+..+-||...+.++.|||...++.+++.|
T Consensus 227 ~glessavaav~vdpsgrll~-sg~------~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd----- 294 (350)
T KOG0641|consen 227 GGLESSAVAAVAVDPSGRLLA-SGH------ADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYD----- 294 (350)
T ss_pred CCcccceeEEEEECCCcceee-ecc------CCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEeccc-----
Confidence 124678999999999999 653 35677899988999999999999999999999999999999986
Q ss_pred CCeEEEEeCCCeeEEEEEec--cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee
Q 000736 249 CPSIVFYERNGLERSSFDIN--EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1323)
Q Consensus 249 ~~~V~~~e~nGl~~~~f~l~--~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~ 305 (1323)
..|++-+..|....++.+- ..+...+..+.|.|..--+.+.+.|+ ++.||..+
T Consensus 295 -~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadk---t~tlwa~~ 349 (350)
T KOG0641|consen 295 -MKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADK---TATLWALN 349 (350)
T ss_pred -ceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcc---eEEEeccC
Confidence 5699999888765553221 23346788999999988888999998 99999864
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-11 Score=150.48 Aligned_cols=223 Identities=14% Similarity=0.097 Sum_probs=134.2
Q ss_pred CCEEEEEEecCCCEEEEEeC-CC--cEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEE-eCCcc--EEEEeecCce
Q 000736 76 DSITAFDYLMEKEALIVGTS-SG--LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVT-TGFGQ--ILVMTHDWDL 149 (1323)
Q Consensus 76 ~~V~~v~~spdg~~La~as~-dG--~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~-s~d~t--V~l~t~~~d~ 149 (1323)
..+.+..|||||+.|+.++. +| .|.+||+.+++...+....+...+.+|||||+.||.+ +.++. |.+|+.....
T Consensus 218 ~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~ 297 (448)
T PRK04792 218 EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA 297 (448)
T ss_pred CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC
Confidence 45778999999999997754 33 5888899887765444445556688999999999875 45665 4443321111
Q ss_pred eeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEE
Q 000736 150 LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLE 229 (1323)
Q Consensus 150 ~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~sla 229 (1323)
. ..+. .+.......+|+|||+++++++.. .+...|.++|..+|+...... ........+
T Consensus 298 ~--~~lt--------------~~~~~~~~p~wSpDG~~I~f~s~~----~g~~~Iy~~dl~~g~~~~Lt~-~g~~~~~~~ 356 (448)
T PRK04792 298 L--TRIT--------------RHRAIDTEPSWHPDGKSLIFTSER----GGKPQIYRVNLASGKVSRLTF-EGEQNLGGS 356 (448)
T ss_pred e--EECc--------------cCCCCccceEECCCCCEEEEEECC----CCCceEEEEECCCCCEEEEec-CCCCCcCee
Confidence 1 1111 111233678999999999844422 234578888887777655321 112234579
Q ss_pred EccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCee
Q 000736 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1323)
Q Consensus 230 wsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~w 309 (1323)
|+|||+.|+.++.... ...|..++..+..... +... ....+.+|+|||+.|+..+.++....+.+++... .+
T Consensus 357 ~SpDG~~l~~~~~~~g---~~~I~~~dl~~g~~~~--lt~~--~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G-~~ 428 (448)
T PRK04792 357 ITPDGRSMIMVNRTNG---KFNIARQDLETGAMQV--LTST--RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG-RF 428 (448)
T ss_pred ECCCCCEEEEEEecCC---ceEEEEEECCCCCeEE--ccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCC-Cc
Confidence 9999999998876432 3456666755433222 2211 1223568999999999887765333466666543 22
Q ss_pred EEEeEEEEecCCcEEEEEcc
Q 000736 310 YLKYEIRYLRRDGIRFMWHP 329 (1323)
Q Consensus 310 ylkq~l~~~~~~~~~v~Wsp 329 (1323)
++.+..+........|+|
T Consensus 429 --~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 429 --KARLPAGQGEVKSPAWSP 446 (448)
T ss_pred --eEECcCCCCCcCCCccCC
Confidence 223322222224566776
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.2e-11 Score=131.89 Aligned_cols=202 Identities=12% Similarity=0.158 Sum_probs=136.7
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEece-ecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeee
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGR-VEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e~vg~-~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~ 153 (1323)
.-.+..++|++---.+|++..|-.|++|+.+......+.+ -...|+|++|-|-+..-.+++--+-|-+|+.+.......
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r 177 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANR 177 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCccccccc
Confidence 3468899999988888899999999999987633222322 246799999999876544444445688997553332222
Q ss_pred eecccC-CCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEcc
Q 000736 154 PLEELA-EGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP 232 (1323)
Q Consensus 154 ~l~~~~-~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsP 232 (1323)
...... +...| .+-.+| ..|.++.|.+||-.++ .++. ++..|+|||+++|..+..-....|.+.-+-|||
T Consensus 178 ~~~~~s~~~~qv--l~~pgh-~pVtsmqwn~dgt~l~-tAS~-----gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP 248 (445)
T KOG2139|consen 178 NIRMMSTHHLQV--LQDPGH-NPVTSMQWNEDGTILV-TASF-----GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP 248 (445)
T ss_pred ccccccccchhh--eeCCCC-ceeeEEEEcCCCCEEe-eccc-----CcceEEEEcCCCCCcccccccCCCceeeEEEcC
Confidence 211111 00011 111233 5789999999999999 5553 468999999999987765433345568899999
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccC
Q 000736 233 SGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE 294 (1323)
Q Consensus 233 dG~lIAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~ 294 (1323)
||..|-++..|. .-++|..| -+....+.+ +.+.|..-.|||+|..|..++...
T Consensus 249 dgd~lfaAt~da------vfrlw~e~q~wt~erw~l---gsgrvqtacWspcGsfLLf~~sgs 302 (445)
T KOG2139|consen 249 DGDVLFAATCDA------VFRLWQENQSWTKERWIL---GSGRVQTACWSPCGSFLLFACSGS 302 (445)
T ss_pred CCCEEEEecccc------eeeeehhcccceecceec---cCCceeeeeecCCCCEEEEEEcCC
Confidence 999988887764 58889433 222221222 245899999999999988877655
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.9e-12 Score=148.29 Aligned_cols=203 Identities=16% Similarity=0.226 Sum_probs=139.8
Q ss_pred EecCCCEEE--EEeCCCcEEEEeCCC-CeEE---Eecee-cCcEEEEEEcC-CCCeEEEEeCCccEEEEeecCceeeeee
Q 000736 83 YLMEKEALI--VGTSSGLLLLHSVDG-NATE---VVGRV-EGGVRFISPSP-DGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1323)
Q Consensus 83 ~spdg~~La--~as~dG~I~lw~~~~-~~~e---~vg~~-~~~I~~~awSP-DG~~LA~~s~d~tV~l~t~~~d~~~e~~ 154 (1323)
|....+..| .++..|.|-|++++. +++. +-|-+ ...|+.+.|.| |.+.||+++.||.|.+|-..-+-+.+..
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~ 666 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE 666 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc
Confidence 345555665 356689999999864 3321 11111 24599999999 7899999999999999843221111111
Q ss_pred ecccCCCceeccCccccCCCCeEEEEEecCC-cEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccC
Q 000736 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDG-KYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS 233 (1323)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG-~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPd 233 (1323)
..+ ++....|.+.|+++.|.|=. ..|| ++++ |-+|++||..++++...+.+|.+.|-++|||||
T Consensus 667 ~tP--------e~~lt~h~eKI~slRfHPLAadvLa-~asy------d~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpd 731 (1012)
T KOG1445|consen 667 MTP--------EKILTIHGEKITSLRFHPLAADVLA-VASY------DSTIELWDLANAKLYSRLVGHTDQIFGIAWSPD 731 (1012)
T ss_pred CCc--------ceeeecccceEEEEEecchhhhHhh-hhhc------cceeeeeehhhhhhhheeccCcCceeEEEECCC
Confidence 111 22233677889999999954 4666 6654 479999999999999999999999999999999
Q ss_pred CCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCC-CCeEEEEEeeC
Q 000736 234 GANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEE-YDSVKICFFSN 306 (1323)
Q Consensus 234 G~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~-~~~V~LW~~~n 306 (1323)
|++||+.+.| .+|++|+........+.-+++-...--.|-|-+||.++.+.+.|.. ...|++|+...
T Consensus 732 Gr~~AtVcKD------g~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 732 GRRIATVCKD------GTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred CcceeeeecC------ceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence 9999999986 4699998532111101111221233447899999999999887763 22688887653
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.38 E-value=5e-11 Score=144.65 Aligned_cols=201 Identities=18% Similarity=0.176 Sum_probs=130.4
Q ss_pred CCCEEEEEEecCCCEEEEEeCC---CcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEe-CCc--cEEEEeecCc
Q 000736 75 GDSITAFDYLMEKEALIVGTSS---GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTT-GFG--QILVMTHDWD 148 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~d---G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s-~d~--tV~l~t~~~d 148 (1323)
++.+.+..|||||+.|+.++.. .+|.+|++.+++...+..+.+.+.+++|||||+.|+... .++ .|.+|+....
T Consensus 189 ~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~ 268 (417)
T TIGR02800 189 REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK 268 (417)
T ss_pred CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCC
Confidence 3468889999999999987654 479999999876654444566678899999999888654 344 4555542211
Q ss_pred eeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEE
Q 000736 149 LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVL 228 (1323)
Q Consensus 149 ~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~sl 228 (1323)
.. ..+. .+.......+|+|||++|++++.. .+...|.+||..+|+...... .......+
T Consensus 269 ~~--~~l~--------------~~~~~~~~~~~s~dg~~l~~~s~~----~g~~~iy~~d~~~~~~~~l~~-~~~~~~~~ 327 (417)
T TIGR02800 269 QL--TRLT--------------NGPGIDTEPSWSPDGKSIAFTSDR----GGSPQIYMMDADGGEVRRLTF-RGGYNASP 327 (417)
T ss_pred CE--EECC--------------CCCCCCCCEEECCCCCEEEEEECC----CCCceEEEEECCCCCEEEeec-CCCCccCe
Confidence 11 1111 111223467899999998844422 233578889986666544332 33445788
Q ss_pred EEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEE
Q 000736 229 EWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICF 303 (1323)
Q Consensus 229 awsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~ 303 (1323)
+|+|+|++|+.+..+.+ ...|.+|+.++.... .+.. .......+|+|||+.|+..+.++....+.+.+
T Consensus 328 ~~spdg~~i~~~~~~~~---~~~i~~~d~~~~~~~--~l~~--~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~ 395 (417)
T TIGR02800 328 SWSPDGDLIAFVHREGG---GFNIAVMDLDGGGER--VLTD--TGLDESPSFAPNGRMILYATTRGGRGVLGLVS 395 (417)
T ss_pred EECCCCCEEEEEEccCC---ceEEEEEeCCCCCeE--EccC--CCCCCCceECCCCCEEEEEEeCCCcEEEEEEE
Confidence 99999999999877532 457888886653222 1221 12345678999999999988765333344444
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.7e-11 Score=129.44 Aligned_cols=248 Identities=11% Similarity=0.078 Sum_probs=160.5
Q ss_pred eeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEE
Q 000736 23 LQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLH 102 (1323)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw 102 (1323)
-.++-|.+-|+.|.+++.++.++.||. .+... .++ +.+|. -.|.+++||+||+.|.++|.|..|++|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~--~T~~i-ar~------lsaH~----~pi~sl~WS~dgr~LltsS~D~si~lw 92 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDF--DTFRI-ARM------LSAHV----RPITSLCWSRDGRKLLTSSRDWSIKLW 92 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEc--cccch-hhh------hhccc----cceeEEEecCCCCEeeeecCCceeEEE
Confidence 456778899999999999999999999 55542 111 33442 379999999999999999999999999
Q ss_pred eCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeC--Cc-cEEEEeecCceeeeeeecccC---------------CCcee
Q 000736 103 SVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG--FG-QILVMTHDWDLLYENPLEELA---------------EGFDV 164 (1323)
Q Consensus 103 ~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~--d~-tV~l~t~~~d~~~e~~l~~~~---------------~~~~V 164 (1323)
|+..+.+----.++..|+.+.|.|--...++++- .. ++...+ ++... .+..++ .+++|
T Consensus 93 Dl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s---~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yI 168 (405)
T KOG1273|consen 93 DLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFS---DPKHS-VLPKDDDGDLNSSASHGVFDRRGKYI 168 (405)
T ss_pred eccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEec---CCcee-eccCCCccccccccccccccCCCCEE
Confidence 9976654322235788999999987666665542 21 222111 12111 111111 12222
Q ss_pred -c------------cCc-----cccC-CCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCC-------Cceee--
Q 000736 165 -H------------EPE-----LSSS-FSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS-------GTLQA-- 216 (1323)
Q Consensus 165 -s------------~tq-----f~~~-~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~-------G~l~~-- 216 (1323)
+ +++ |+-. ...|-+|-++-.|++|+ +.+ .||+||+|+..+ |++-.
T Consensus 169 itGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~li-iNt------sDRvIR~ye~~di~~~~r~~e~e~~~ 241 (405)
T KOG1273|consen 169 ITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLI-INT------SDRVIRTYEISDIDDEGRDGEVEPEH 241 (405)
T ss_pred EEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEE-Eec------CCceEEEEehhhhcccCccCCcChhH
Confidence 1 110 1111 14567889999999999 774 479999998731 11110
Q ss_pred eec-cCCCce-eEEEEccCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEcc
Q 000736 217 SSE-LKAFMG-AVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRF 293 (1323)
Q Consensus 217 t~e-~~~~~v-~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d 293 (1323)
.+. -++... .+++||-+|.+|..++.. .+.+-+||++ |.... .|.+........+.|.|-.-++|+-.++
T Consensus 242 K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~-----aHaLYIWE~~~GsLVK--ILhG~kgE~l~DV~whp~rp~i~si~sg 314 (405)
T KOG1273|consen 242 KLQDVVNKLQWKKCCFSGDGEYVCAGSAR-----AHALYIWEKSIGSLVK--ILHGTKGEELLDVNWHPVRPIIASIASG 314 (405)
T ss_pred HHHHHHhhhhhhheeecCCccEEEecccc-----ceeEEEEecCCcceee--eecCCchhheeecccccceeeeeeccCC
Confidence 000 001111 578899999999877754 5789999986 33322 2433333457789999999999998444
Q ss_pred CCCCeEEEEEee
Q 000736 294 EEYDSVKICFFS 305 (1323)
Q Consensus 294 ~~~~~V~LW~~~ 305 (1323)
+|.+|...
T Consensus 315 ----~v~iw~~~ 322 (405)
T KOG1273|consen 315 ----VVYIWAVV 322 (405)
T ss_pred ----ceEEEEee
Confidence 69999975
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.7e-10 Score=136.04 Aligned_cols=335 Identities=12% Similarity=0.093 Sum_probs=203.7
Q ss_pred eEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEe
Q 000736 24 QFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHS 103 (1323)
Q Consensus 24 ~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~ 103 (1323)
..+++...++..+++-..+ |+.|... .+. +....-+. -..|.+ .++.+++||.++.+|+|-.||.|.+|.
T Consensus 164 ~~I~~~~~ge~~~i~~~~~-~~~~~v~--~~~--~~~~~~~~-~~~Htf----~~t~~~~spn~~~~Aa~d~dGrI~vw~ 233 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHMCK-IHIYFVP--KHT--KHTSSRDI-TVHHTF----NITCVALSPNERYLAAGDSDGRILVWR 233 (792)
T ss_pred ccEEEcCCceEEEEEEeee-EEEEEec--ccc--eeeccchh-hhhhcc----cceeEEeccccceEEEeccCCcEEEEe
Confidence 4455556566666665555 7778773 211 11111011 123433 389999999999999999999999998
Q ss_pred CCC-----CeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEE
Q 000736 104 VDG-----NATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1323)
Q Consensus 104 ~~~-----~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~ 178 (1323)
-.+ ..+.++-=|.+.|++++||+||.+|.+|+.++.+.+|...-. ..+-+.- -...+..
T Consensus 234 d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~--~kqfLPR--------------Lgs~I~~ 297 (792)
T KOG1963|consen 234 DFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETG--KKQFLPR--------------LGSPILH 297 (792)
T ss_pred ccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCC--Ccccccc--------------cCCeeEE
Confidence 644 223455556789999999999999999999999999864211 0111111 1246789
Q ss_pred EEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeee---eccC--------CCceeEEEEccCCCeEEEEecCCCCC
Q 000736 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS---SELK--------AFMGAVLEWMPSGANIAAVYDRKSEN 247 (1323)
Q Consensus 179 isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t---~e~~--------~~~v~slawsPdG~lIAs~s~d~~~~ 247 (1323)
+.|||||.+.+ +. .+|+.|.+-...+-+...+ ..+. .++...++..|.-+.++-.+.
T Consensus 298 i~vS~ds~~~s-l~------~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~----- 365 (792)
T KOG1963|consen 298 IVVSPDSDLYS-LV------LEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGH----- 365 (792)
T ss_pred EEEcCCCCeEE-EE------ecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCC-----
Confidence 99999999988 54 3478888887744443332 2222 456688999995555555544
Q ss_pred CCCeEEEEeCCCe-eEEEEEec--cCC------CCcEEEEEEccCCCeeEEEEccCC-------CCeEEEEEee--CCee
Q 000736 248 KCPSIVFYERNGL-ERSSFDIN--EQI------DSTVELLKWNCMSDLLAAVVRFEE-------YDSVKICFFS--NNHW 309 (1323)
Q Consensus 248 ~~~~V~~~e~nGl-~~~~f~l~--~~~------~~~V~~laWSpDg~~LA~~~~d~~-------~~~V~LW~~~--n~~w 309 (1323)
.+.|.||+.-.. ...++..- ... ...+.+++.+.+|..+|+.-.-.+ ...+|+|..+ ...|
T Consensus 366 -~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~ 444 (792)
T KOG1963|consen 366 -PGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTF 444 (792)
T ss_pred -CceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCccee
Confidence 367999984211 11222111 111 235788999999999998753221 2379999976 3346
Q ss_pred EEEeEEEEecCCc-EEE-EEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCc-CCCCCc---
Q 000736 310 YLKYEIRYLRRDG-IRF-MWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLS-LMPPPM--- 383 (1323)
Q Consensus 310 ylkq~l~~~~~~~-~~v-~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~-~vPppm--- 383 (1323)
.|+-.+.-+++.. ... ..+|....+.+....+|. +++|-|... ++-|--
T Consensus 445 ~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~-------------------------~KiW~~~~~~n~~k~~s~W 499 (792)
T KOG1963|consen 445 ILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGD-------------------------FKIWVFTDDSNIYKKSSNW 499 (792)
T ss_pred EEEEEEecCCCceeEEEEEecCcccceeEEeccCCe-------------------------EEEEEEecccccCcCccce
Confidence 6766666555444 332 333332222333333443 333333110 000000
Q ss_pred eeeee--cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCCC
Q 000736 384 YLFSL--KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1323)
Q Consensus 384 ~~~~l--~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~ 425 (1323)
+..-+ -|..++++.+||.|| ..||++ .|++|.+|+..++
T Consensus 500 ~c~~i~sy~k~~i~a~~fs~dG--slla~s-~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 500 TCKAIGSYHKTPITALCFSQDG--SLLAVS-FDDTITIWDYDTK 540 (792)
T ss_pred EEeeeeccccCcccchhhcCCC--cEEEEe-cCCEEEEecCCCh
Confidence 01111 156788999999999 666665 7779999999874
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.9e-11 Score=130.98 Aligned_cols=281 Identities=12% Similarity=0.084 Sum_probs=179.8
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeecccccc-ccccCCCCCCEEEEEEe-------cCCCEEEEE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEI-EHIDLEPGDSITAFDYL-------MEKEALIVG 93 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~V~~v~~s-------pdg~~La~a 93 (1323)
-..++-|.|||..|.+-++|+.+-.|+++..-...... .-++..+ .+.-...++.|.+-.|- |+....|+.
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~-~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKAD-GPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCC-CccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 34556799999999999999989999986211110000 0000000 00112226778888885 678899999
Q ss_pred eCCCcEEEEeCCCCeEEE----eceec--CcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccC
Q 000736 94 TSSGLLLLHSVDGNATEV----VGRVE--GGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEP 167 (1323)
Q Consensus 94 s~dG~I~lw~~~~~~~e~----vg~~~--~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~t 167 (1323)
+.+.-|+|||.-++++.. ..+.+ -+-.+++|||||+.|.. +-..+|++++. .. +....+ +-.|
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-GykrcirvFdt----~R--pGr~c~----vy~t 198 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-GYKRCIRVFDT----SR--PGRDCP----VYTT 198 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-cccceEEEeec----cC--CCCCCc----chhh
Confidence 999999999999877642 11111 12458999999999865 45568877642 10 000000 0001
Q ss_pred ccc---cCCCCeEEEEEecCC-cEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecC
Q 000736 168 ELS---SSFSFKSPISWRGDG-KYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDR 243 (1323)
Q Consensus 168 qf~---~~~~~i~~isWspDG-~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d 243 (1323)
.++ +..+-+.+++|+|-. +.+| +++.. +++-||+-..+.++.++-+|.|.|+.|.|.|+|+.+-+|.+.
T Consensus 199 ~~~~k~gq~giisc~a~sP~~~~~~a-~gsY~------q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk 271 (406)
T KOG2919|consen 199 VTKGKFGQKGIISCFAFSPMDSKTLA-VGSYG------QRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK 271 (406)
T ss_pred hhcccccccceeeeeeccCCCCccee-eeccc------ceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccC
Confidence 111 334567899999954 5888 88763 678888877788888888999999999999999999999885
Q ss_pred CCCCCCCeEEEEeCCCeeEEEEEeccCC--CCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCC-eeEEEeEEEEec-
Q 000736 244 KSENKCPSIVFYERNGLERSSFDINEQI--DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN-HWYLKYEIRYLR- 319 (1323)
Q Consensus 244 ~~~~~~~~V~~~e~nGl~~~~f~l~~~~--~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~-~wylkq~l~~~~- 319 (1323)
+..|-.||..--+.--+.|..+- ++.=.-...-|+|++||+|+.|+ .|++||.+.+ .|. ..+..
T Consensus 272 -----~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG---~V~vwdlk~~gn~~----sv~~~~ 339 (406)
T KOG2919|consen 272 -----DDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDG---SVRVWDLKDLGNEV----SVTGNY 339 (406)
T ss_pred -----CCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCc---cEEEEecCCCCCcc----cccccc
Confidence 45788898421111112222111 11112234469999999999999 9999999863 221 11111
Q ss_pred CCc-EEEEEccCCCc
Q 000736 320 RDG-IRFMWHPTKPL 333 (1323)
Q Consensus 320 ~~~-~~v~Wsp~~~~ 333 (1323)
.+. ..|+.+|--|.
T Consensus 340 sd~vNgvslnP~mpi 354 (406)
T KOG2919|consen 340 SDTVNGVSLNPIMPI 354 (406)
T ss_pred cccccceecCcccce
Confidence 222 67888987553
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.9e-11 Score=130.04 Aligned_cols=250 Identities=18% Similarity=0.301 Sum_probs=164.5
Q ss_pred CCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCc---eeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCC
Q 000736 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT---LQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCP 250 (1323)
Q Consensus 174 ~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~---l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~ 250 (1323)
..|.+.+|++|++.+| ++- ....|.||....+. ...++..|+..|+.|.|+|.++.|.+++.|.+
T Consensus 11 ~pitchAwn~drt~iA-v~~------~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drn----- 78 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIA-VSP------NNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRN----- 78 (361)
T ss_pred CceeeeeecCCCceEE-ecc------CCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCC-----
Confidence 4679999999999999 763 34679999884333 45577789999999999999999999998753
Q ss_pred eEEEEeC-CCee-EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee-CCeeEEEeEEEEecCCc-EEEE
Q 000736 251 SIVFYER-NGLE-RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS-NNHWYLKYEIRYLRRDG-IRFM 326 (1323)
Q Consensus 251 ~V~~~e~-nGl~-~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~-n~~wylkq~l~~~~~~~-~~v~ 326 (1323)
--+|+. .|-. .....|- .....+..|.|||.+..+|+++..+ .|-+|... ...|...+.+.-+-.+. .++.
T Consensus 79 -ayVw~~~~~~~WkptlvLl-RiNrAAt~V~WsP~enkFAVgSgar---~isVcy~E~ENdWWVsKhikkPirStv~sld 153 (361)
T KOG1523|consen 79 -AYVWTQPSGGTWKPTLVLL-RINRAATCVKWSPKENKFAVGSGAR---LISVCYYEQENDWWVSKHIKKPIRSTVTSLD 153 (361)
T ss_pred -ccccccCCCCeeccceeEE-EeccceeeEeecCcCceEEeccCcc---EEEEEEEecccceehhhhhCCccccceeeee
Confidence 445765 3321 1112221 1234688999999999999999877 89999875 34564443443332333 8899
Q ss_pred EccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCC--CceeeeecCCCCEEEEEEecCCC
Q 000736 327 WHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPP--PMYLFSLKFPTAVTEMAFYSKSS 404 (1323)
Q Consensus 327 Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPp--pm~~~~l~~~~~V~~VaFSpdg~ 404 (1323)
|||.+-+ |..++.|+...+ |+.. +--+|.+. .=+|. +..+|= -|+.+. ...++|..|.|||+|
T Consensus 154 WhpnnVL-laaGs~D~k~rV----fSay------IK~Vdekp-ap~pW-gsk~PFG~lm~E~~-~~ggwvh~v~fs~sG- 218 (361)
T KOG1523|consen 154 WHPNNVL-LAAGSTDGKCRV----FSAY------IKGVDEKP-APTPW-GSKMPFGQLMSEAS-SSGGWVHGVLFSPSG- 218 (361)
T ss_pred ccCCcce-ecccccCcceeE----EEEe------eeccccCC-CCCCC-ccCCcHHHHHHhhc-cCCCceeeeEeCCCC-
Confidence 9998765 777777776643 3221 11111111 00000 001110 122111 346789999999999
Q ss_pred CCEEEEEECCCcEEEEECCCCCc-cccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecC
Q 000736 405 KNCLAAILSDGCLCVVDLPAPDM-LEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHG 468 (1323)
Q Consensus 405 ~~~LAs~s~Dgti~lw~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~ 468 (1323)
+.||=.++|.++.+-+...+.. ...+ ....-..+.+.|..+..+++++.+.
T Consensus 219 -~~lawv~Hds~v~~~da~~p~~~v~~~------------~~~~lP~ls~~~ise~~vv~ag~~c 270 (361)
T KOG1523|consen 219 -NRLAWVGHDSTVSFVDAAGPSERVQSV------------ATAQLPLLSVSWISENSVVAAGYDC 270 (361)
T ss_pred -CEeeEecCCCceEEeecCCCchhccch------------hhccCCceeeEeecCCceeecCCCC
Confidence 9999999999999999876531 1011 0111357888999999988877663
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.5e-11 Score=130.29 Aligned_cols=275 Identities=12% Similarity=0.096 Sum_probs=175.3
Q ss_pred cCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCC
Q 000736 171 SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCP 250 (1323)
Q Consensus 171 ~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~ 250 (1323)
||.++|+.++-..--..++ .++ .|.+-+||..++|.++.+..+|.|.|++|.|+|+|.++++++.|.+
T Consensus 146 GHkDGiW~Vaa~~tqpi~g-tAS------ADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~t----- 213 (481)
T KOG0300|consen 146 GHKDGIWHVAADSTQPICG-TAS------ADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDET----- 213 (481)
T ss_pred ccccceeeehhhcCCccee-ecc------cccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcc-----
Confidence 7888999987655444555 443 3589999999999999999999999999999999999999988753
Q ss_pred eEEEEe-------------------------------CCCeeEE---EEEec----cCCCCcEEEEEEccCCCeeEEEEc
Q 000736 251 SIVFYE-------------------------------RNGLERS---SFDIN----EQIDSTVELLKWNCMSDLLAAVVR 292 (1323)
Q Consensus 251 ~V~~~e-------------------------------~nGl~~~---~f~l~----~~~~~~V~~laWSpDg~~LA~~~~ 292 (1323)
-.+|. ++|.... .+..| ..+.+.|.+..|-..|+.+++++.
T Consensus 214 -aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSW 292 (481)
T KOG0300|consen 214 -AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASW 292 (481)
T ss_pred -hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeec
Confidence 22221 0000000 01111 123456888899999999999999
Q ss_pred cCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEE---eee--------------e
Q 000736 293 FEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIW---TTA--------------V 355 (1323)
Q Consensus 293 d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~---~~~--------------~ 355 (1323)
|+ +--|||+.+.. +-+.+.+|..+-+.+.=||...+ +...+.|-++..++|.- +++ .
T Consensus 293 DR---TAnlwDVEtge--~v~~LtGHd~ELtHcstHptQrL-VvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~ 366 (481)
T KOG0300|consen 293 DR---TANLWDVETGE--VVNILTGHDSELTHCSTHPTQRL-VVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFN 366 (481)
T ss_pred cc---cceeeeeccCc--eeccccCcchhccccccCCcceE-EEEeccCceeEeccchhhcceeeeecccccceeEEEEe
Confidence 99 89999998764 23444444333244444553321 11222232232222210 000 1
Q ss_pred CCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCCCCccccccCCc
Q 000736 356 MENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTE 435 (1323)
Q Consensus 356 ~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~ 435 (1323)
-|..+|...|+.++++|+++. |-.|+. ++..+++++.|+.|..+ ..+|.--.+..|+|||+++.... .++.
T Consensus 367 ~dd~vVSgSDDrTvKvWdLrN--MRsplA--TIRtdS~~NRvavs~g~--~iIAiPhDNRqvRlfDlnG~Rla-RlPr-- 437 (481)
T KOG0300|consen 367 TDDRVVSGSDDRTVKVWDLRN--MRSPLA--TIRTDSPANRVAVSKGH--PIIAIPHDNRQVRLFDLNGNRLA-RLPR-- 437 (481)
T ss_pred cCCceeecCCCceEEEeeecc--ccCcce--eeecCCccceeEeecCC--ceEEeccCCceEEEEecCCCccc-cCCc--
Confidence 244567778999999999974 445555 67789999999999988 89999988899999999863211 1111
Q ss_pred eeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCeeEEEEe
Q 000736 436 FVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1323)
Q Consensus 436 ~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1323)
+...++..-|.+.+|+.+.-..-....+....+.-|.+
T Consensus 438 -----tsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~i 475 (481)
T KOG0300|consen 438 -----TSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKI 475 (481)
T ss_pred -----ccccccceeeeeeeccccCcccccccccccceeeeeEe
Confidence 01123334578889988875432222233244444444
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-10 Score=131.65 Aligned_cols=272 Identities=13% Similarity=0.130 Sum_probs=164.4
Q ss_pred EEEEEeCCCcEEEEeccc-ccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCC-------
Q 000736 34 RLFFASSANNIYSAQLSS-FQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVD------- 105 (1323)
Q Consensus 34 ~l~~~s~~~~i~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~~------- 105 (1323)
.++++..|+.|..|.++. ..++...++. .-+.|..| ...|+.|.|+|+|+.||+|+++|+|.||-..
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~-y~s~Ls~H----~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~ 102 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVE-YLSSLSRH----TRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDA 102 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEE-EeecccCC----cceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccc
Confidence 778888899999999951 1111111222 11223334 4689999999999999999999999999865
Q ss_pred -C-----C---e-EEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe-ecCceeeeeeecccCCCceeccCccccCCC
Q 000736 106 -G-----N---A-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1323)
Q Consensus 106 -~-----~---~-~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~ 174 (1323)
+ . . ...++.|...|..++||||+..|++++.|+++.+|+ ..|.... ..+ +|..
T Consensus 103 d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~-----~~~-----------dh~~ 166 (434)
T KOG1009|consen 103 DTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLA-----ILD-----------DHEH 166 (434)
T ss_pred cchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEe-----ecc-----------cccc
Confidence 3 1 1 124555788899999999999999999999998765 3344332 222 4555
Q ss_pred CeEEEEEecCCcEEEEeeccccccCCCCEEEEEECC---------------------CCceeeeeccCCC----ceeEEE
Q 000736 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD---------------------SGTLQASSELKAF----MGAVLE 229 (1323)
Q Consensus 175 ~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~---------------------~G~l~~t~e~~~~----~v~sla 229 (1323)
.+.-++|.|-++|+++- +.| +..++++.. +|...+.+ |+. .-.-++
T Consensus 167 yvqgvawDpl~qyv~s~-s~d------r~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLf--hDeTlksFFrRls 237 (434)
T KOG1009|consen 167 YVQGVAWDPLNQYVASK-SSD------RHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLF--HDETLKSFFRRLS 237 (434)
T ss_pred ccceeecchhhhhhhhh-ccC------cccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeee--ecCchhhhhhhcc
Confidence 67889999999999943 333 222222211 11111111 111 125789
Q ss_pred EccCCCeEEEEecC--CCCCC-CCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEc------------------cCCCeeE
Q 000736 230 WMPSGANIAAVYDR--KSENK-CPSIVFYERNGLERSSFDINEQIDSTVELLKWN------------------CMSDLLA 288 (1323)
Q Consensus 230 wsPdG~lIAs~s~d--~~~~~-~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWS------------------pDg~~LA 288 (1323)
|+|||.++.+...- .++.. .+..-+|.+.-+.+--+.++.+. ..+..+.++ |-+-+.|
T Consensus 238 fTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~-k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa 316 (434)
T KOG1009|consen 238 FTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPK-KPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA 316 (434)
T ss_pred cCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCC-cceEEEEeeeeEEEeccccccccccccccceEEE
Confidence 99999999876532 11000 22333455433332223333221 123333333 4455788
Q ss_pred EEEccCCCCeEEEEEeeCCee-EEEeEEEEecCCcEEEEEccCCCcEEEEEecCCc
Q 000736 289 AVVRFEEYDSVKICFFSNNHW-YLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQ 343 (1323)
Q Consensus 289 ~~~~d~~~~~V~LW~~~n~~w-ylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~ 343 (1323)
+++.+. |.++|+..... +.-..|.|+ ..+.++|++++.. |.+.+.||-
T Consensus 317 iAt~~s----vyvydtq~~~P~~~v~nihy~--~iTDiaws~dg~~-l~vSS~DGy 365 (434)
T KOG1009|consen 317 IATKNS----VYVYDTQTLEPLAVVDNIHYS--AITDIAWSDDGSV-LLVSSTDGF 365 (434)
T ss_pred Eeecce----EEEeccccccceEEEeeeeee--eecceeecCCCcE-EEEeccCCc
Confidence 888886 99999876322 222334442 2377899999876 555566773
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=6e-11 Score=132.66 Aligned_cols=198 Identities=12% Similarity=0.121 Sum_probs=132.9
Q ss_pred CCEEEEEEecC--CCEEEEEeCCCcEEEEeCCC-----------------CeEEEeceecCcEEEEEEcCCCC-eEEEEe
Q 000736 76 DSITAFDYLME--KEALIVGTSSGLLLLHSVDG-----------------NATEVVGRVEGGVRFISPSPDGD-LLGVTT 135 (1323)
Q Consensus 76 ~~V~~v~~spd--g~~La~as~dG~I~lw~~~~-----------------~~~e~vg~~~~~I~~~awSPDG~-~LA~~s 135 (1323)
+.+.-+.-++- .-..|+=++.|.|.+|++.. ..+-.++.|.+.=.+++|||--. .|++|.
T Consensus 152 g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGD 231 (440)
T KOG0302|consen 152 GGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGD 231 (440)
T ss_pred cccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCc
Confidence 45555554554 34555668999999999742 11224555666678999999311 255555
Q ss_pred CCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCc-EEEEeeccccccCCCCEEEEEECCCC--
Q 000736 136 GFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGK-YFATLSEFCNSSKLHKRLKVWERDSG-- 212 (1323)
Q Consensus 136 ~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~-~lAtvss~d~~~~~d~~IrVWd~~~G-- 212 (1323)
.-+.|.+|. +..+ .++.+ ..-|-+|...|-.+.|||.-. .|| ++|. |++|||||.+.|
T Consensus 232 c~~~I~lw~----~~~g-~W~vd-------~~Pf~gH~~SVEDLqWSptE~~vfa-ScS~------DgsIrIWDiRs~~~ 292 (440)
T KOG0302|consen 232 CVKGIHLWE----PSTG-SWKVD-------QRPFTGHTKSVEDLQWSPTEDGVFA-SCSC------DGSIRIWDIRSGPK 292 (440)
T ss_pred cccceEeee----eccC-ceeec-------CccccccccchhhhccCCccCceEE-eeec------CceEEEEEecCCCc
Confidence 556676664 3221 11111 223447788889999999653 677 4433 589999998788
Q ss_pred -ceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEE----EEEeccCCCCcEEEEEEccC-CCe
Q 000736 213 -TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERS----SFDINEQIDSTVELLKWNCM-SDL 286 (1323)
Q Consensus 213 -~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~----~f~l~~~~~~~V~~laWSpD-g~~ 286 (1323)
.++.+ ..|.+-|+.|+|+-.-.+||||+++ +++.+|+..-.+.+ +|+. |...|.+|.|+|. ..+
T Consensus 293 ~~~~~~-kAh~sDVNVISWnr~~~lLasG~Dd------Gt~~iwDLR~~~~~~pVA~fk~---Hk~pItsieW~p~e~s~ 362 (440)
T KOG0302|consen 293 KAAVST-KAHNSDVNVISWNRREPLLASGGDD------GTLSIWDLRQFKSGQPVATFKY---HKAPITSIEWHPHEDSV 362 (440)
T ss_pred cceeEe-eccCCceeeEEccCCcceeeecCCC------ceEEEEEhhhccCCCcceeEEe---ccCCeeEEEeccccCce
Confidence 34444 6688999999999998899999986 46999994322222 3433 4567999999984 446
Q ss_pred eEEEEccCCCCeEEEEEee
Q 000736 287 LAAVVRFEEYDSVKICFFS 305 (1323)
Q Consensus 287 LA~~~~d~~~~~V~LW~~~ 305 (1323)
||+++.|. .|.|||++
T Consensus 363 iaasg~D~---QitiWDls 378 (440)
T KOG0302|consen 363 IAASGEDN---QITIWDLS 378 (440)
T ss_pred EEeccCCC---cEEEEEee
Confidence 66666666 79999986
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.1e-10 Score=125.49 Aligned_cols=239 Identities=15% Similarity=0.086 Sum_probs=165.2
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCc--E
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGL--L 99 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~--I 99 (1323)
.+.++.|+-|.-.|..++.++ ...+..+++.+ ..+...++-.|+-+-||.. .+|+++.+.. +
T Consensus 7 ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k-------------~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~L 70 (391)
T KOG2110|consen 7 TINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK-------------CFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKL 70 (391)
T ss_pred ceeeeeeccceeEEEccCCCc-eeEEecCchHH-------------hhcccCCCeEEEEeecccc--eeEEEecCCCceE
Confidence 677788999888888899888 33333311221 1111222456888888865 5566555444 7
Q ss_pred EEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe-ecCceeeeeeecccCCCceeccCccccCCCCeEE
Q 000736 100 LLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1323)
Q Consensus 100 ~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~ 178 (1323)
++++..-+..-|--.....|.++.++-+ .|++.=.+. |.+.+ ++-.++..+... .++..++..
T Consensus 71 kv~~~Kk~~~ICe~~fpt~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhTI~t~-------------~~n~~gl~A 134 (391)
T KOG2110|consen 71 KVVHFKKKTTICEIFFPTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHTIETT-------------PPNPKGLCA 134 (391)
T ss_pred EEEEcccCceEEEEecCCceEEEEEccc--eEEEEEccc-EEEEecccceeehhhhcc-------------CCCccceEe
Confidence 8888765433222235678999999866 444444443 77765 333333322211 023346788
Q ss_pred EEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEe-C
Q 000736 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE-R 257 (1323)
Q Consensus 179 isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e-~ 257 (1323)
++.++++.|+|.=++ ...+.|.|||..+-+...+.+.|.+.+.+|+|+|+|.+||++|++++ -|++|. .
T Consensus 135 lS~n~~n~ylAyp~s-----~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGT-----VIRVf~v~ 204 (391)
T KOG2110|consen 135 LSPNNANCYLAYPGS-----TTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGT-----VIRVFSVP 204 (391)
T ss_pred eccCCCCceEEecCC-----CCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCce-----EEEEEEcC
Confidence 888999999994333 23588999999888888889999999999999999999999998754 677887 6
Q ss_pred CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeC
Q 000736 258 NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1323)
Q Consensus 258 nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n 306 (1323)
+|.+..+|.- +.-...|.+|+||||+++|++.+..+ ||.++-++.
T Consensus 205 ~G~kl~eFRR-G~~~~~IySL~Fs~ds~~L~~sS~Te---TVHiFKL~~ 249 (391)
T KOG2110|consen 205 EGQKLYEFRR-GTYPVSIYSLSFSPDSQFLAASSNTE---TVHIFKLEK 249 (391)
T ss_pred CccEeeeeeC-CceeeEEEEEEECCCCCeEEEecCCC---eEEEEEecc
Confidence 8877777632 22235799999999999999999888 999988764
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-10 Score=142.44 Aligned_cols=219 Identities=14% Similarity=0.111 Sum_probs=137.6
Q ss_pred ceeEEeeecCCCEEEEEeCC---CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEE-EeCCC
Q 000736 22 ILQFSALDIEQNRLFFASSA---NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIV-GTSSG 97 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~---~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~-as~dG 97 (1323)
.+...+|.+|+..|++++.. ..|+.||+ .+++. ..+ ... .+...+..|||||+.|+. .+.+|
T Consensus 219 ~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl--~tg~~-~~l-------t~~----~g~~~~~~wSPDG~~La~~~~~~g 284 (448)
T PRK04792 219 PLMSPAWSPDGRKLAYVSFENRKAEIFVQDI--YTQVR-EKV-------TSF----PGINGAPRFSPDGKKLALVLSKDG 284 (448)
T ss_pred cccCceECCCCCEEEEEEecCCCcEEEEEEC--CCCCe-EEe-------cCC----CCCcCCeeECCCCCEEEEEEeCCC
Confidence 45678999999999888653 36999998 45442 111 111 123446899999998876 45667
Q ss_pred c--EEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeC-Ccc--EEEEeecCceeeeeeecccCCCceeccCccccC
Q 000736 98 L--LLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG-FGQ--ILVMTHDWDLLYENPLEELAEGFDVHEPELSSS 172 (1323)
Q Consensus 98 ~--I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~-d~t--V~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~ 172 (1323)
. |.+||+++++...+..+...+...+|||||+.|+..+. ++. |.+|+....... .+. |.+.
T Consensus 285 ~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~--~Lt------------~~g~ 350 (448)
T PRK04792 285 QPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS--RLT------------FEGE 350 (448)
T ss_pred CeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE--EEe------------cCCC
Confidence 5 77789888777654444455678999999999998874 333 333332111111 111 1111
Q ss_pred CCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeE
Q 000736 173 FSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1323)
Q Consensus 173 ~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V 252 (1323)
.....+|+|||++++.++ .. .+...|.++|..+|+....... ......+|+|||+.|+.++.+.. ...+
T Consensus 351 --~~~~~~~SpDG~~l~~~~-~~---~g~~~I~~~dl~~g~~~~lt~~--~~d~~ps~spdG~~I~~~~~~~g---~~~l 419 (448)
T PRK04792 351 --QNLGGSITPDGRSMIMVN-RT---NGKFNIARQDLETGAMQVLTST--RLDESPSVAPNGTMVIYSTTYQG---KQVL 419 (448)
T ss_pred --CCcCeeECCCCCEEEEEE-ec---CCceEEEEEECCCCCeEEccCC--CCCCCceECCCCCEEEEEEecCC---ceEE
Confidence 124579999999998443 22 1234566788877776543332 23345689999999988776432 3457
Q ss_pred EEEeCCCeeEEEEEeccCCCCcEEEEEEcc
Q 000736 253 VFYERNGLERSSFDINEQIDSTVELLKWNC 282 (1323)
Q Consensus 253 ~~~e~nGl~~~~f~l~~~~~~~V~~laWSp 282 (1323)
.+++.+|..... ++.+ .+.+...+|||
T Consensus 420 ~~~~~~G~~~~~--l~~~-~g~~~~p~Wsp 446 (448)
T PRK04792 420 AAVSIDGRFKAR--LPAG-QGEVKSPAWSP 446 (448)
T ss_pred EEEECCCCceEE--CcCC-CCCcCCCccCC
Confidence 778888865443 3322 34577889998
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-10 Score=130.02 Aligned_cols=269 Identities=21% Similarity=0.270 Sum_probs=167.4
Q ss_pred ecCcEEEEEEcCCC--CeEEEEeCCccEEEEeecCceeeeee---ecccC-CCceeccCccccCCCCeEEEEEec--CCc
Q 000736 115 VEGGVRFISPSPDG--DLLGVTTGFGQILVMTHDWDLLYENP---LEELA-EGFDVHEPELSSSFSFKSPISWRG--DGK 186 (1323)
Q Consensus 115 ~~~~I~~~awSPDG--~~LA~~s~d~tV~l~t~~~d~~~e~~---l~~~~-~~~~Vs~tqf~~~~~~i~~isWsp--DG~ 186 (1323)
|.++|+.+.-+|-| -+.|+=+..|.|.+|+.. ..+.... +.... ...+| -.|.+|.+.=..+.||| .|.
T Consensus 150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~-~~l~~l~~~~~~~~~s~~~Pl--~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLA-PHLNALSEPGLEVKDSEFRPL--FTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred cccccceeeecccCCcceeeeecccCcEEEEEch-hhhhhhcCccccccccccCce--EEecccCccceeeecccccccc
Confidence 46777777777665 455555788999998632 1111110 00000 11111 12346666678999999 443
Q ss_pred EEEEeeccccccCCCCEEEEEECCCCceeee---eccCCCceeEEEEccCC-CeEEEEecCCCCCCCCeEEEEe-CCCee
Q 000736 187 YFATLSEFCNSSKLHKRLKVWERDSGTLQAS---SELKAFMGAVLEWMPSG-ANIAAVYDRKSENKCPSIVFYE-RNGLE 261 (1323)
Q Consensus 187 ~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t---~e~~~~~v~slawsPdG-~lIAs~s~d~~~~~~~~V~~~e-~nGl~ 261 (1323)
. + ++ .-.+.|++|.+.+|.-..- +.+|...|..|.|||.- ..+||||.| +.|++|| |+|..
T Consensus 227 L-l-sG------Dc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~D------gsIrIWDiRs~~~ 292 (440)
T KOG0302|consen 227 L-L-SG------DCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCD------GSIRIWDIRSGPK 292 (440)
T ss_pred c-c-cC------ccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecC------ceEEEEEecCCCc
Confidence 2 3 22 1136799999978754332 44578889999999975 478999987 4699999 56644
Q ss_pred EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeE-EEeEEEEecCCcEEEEEccCCCcEEEEEec
Q 000736 262 RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY-LKYEIRYLRRDGIRFMWHPTKPLQLICWTL 340 (1323)
Q Consensus 262 ~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wy-lkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~ 340 (1323)
......+ .+...|+-|+||-+-.+||+|+.|+ +++|||+.+..-- -..++.+|..-.+++.|||.....+++...
T Consensus 293 ~~~~~~k-Ah~sDVNVISWnr~~~lLasG~DdG---t~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~ 368 (440)
T KOG0302|consen 293 KAAVSTK-AHNSDVNVISWNRREPLLASGGDDG---TLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGE 368 (440)
T ss_pred cceeEee-ccCCceeeEEccCCcceeeecCCCc---eEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccC
Confidence 3322222 3356799999999999999999999 9999999874321 012445554334999999988888888888
Q ss_pred CCcEEEEEEEEeee--eCCCee-EEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcE
Q 000736 341 DGQITTYNFIWTTA--VMENST-ALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCL 417 (1323)
Q Consensus 341 ~g~~~~~~~~~~~~--~~d~~~-v~viDg~~l~lt~l~~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti 417 (1323)
|.++. .|+.+ .++... .-...| ...+||-+ .+.-+-+.-|..|.|++.-. .+|.+.+.|| +
T Consensus 369 D~Qit----iWDlsvE~D~ee~~~~a~~~---------L~dlPpQL-LFVHqGQke~KevhWH~QiP-G~lvsTa~dG-f 432 (440)
T KOG0302|consen 369 DNQIT----IWDLSVEADEEEIDQEAAEG---------LQDLPPQL-LFVHQGQKEVKEVHWHRQIP-GLLVSTAIDG-F 432 (440)
T ss_pred CCcEE----EEEeeccCChhhhccccccc---------hhcCCcee-EEEecchhHhhhheeccCCC-CeEEEecccc-e
Confidence 88886 45544 221110 011111 12455533 22222344588999999863 4666666776 4
Q ss_pred EEE
Q 000736 418 CVV 420 (1323)
Q Consensus 418 ~lw 420 (1323)
.+|
T Consensus 433 nVf 435 (440)
T KOG0302|consen 433 NVF 435 (440)
T ss_pred eEE
Confidence 444
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.3e-10 Score=136.03 Aligned_cols=210 Identities=10% Similarity=0.052 Sum_probs=118.7
Q ss_pred CcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEE--EeC-Cc--cEEEEeecCceeeeeeecccCCCceeccCcccc
Q 000736 97 GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGV--TTG-FG--QILVMTHDWDLLYENPLEELAEGFDVHEPELSS 171 (1323)
Q Consensus 97 G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~--~s~-d~--tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~ 171 (1323)
+.|.+.|.+++....+......+.+-+|||||+.+++ .+. +| .|.+++.... ....+. .|.
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g--~~~~lt-----------~~~- 230 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENP--AGKKIL-----------ALQ- 230 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCC--CceEee-----------cCC-
Confidence 3577778877654433333455778899999987443 443 33 3443332211 111111 111
Q ss_pred CCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCC---CceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCC
Q 000736 172 SFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS---GTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENK 248 (1323)
Q Consensus 172 ~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~---G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~ 248 (1323)
+.....+|||||+.||.++...+ ..+..+.+|+..+ |..........+.....+|||||+.||..++...
T Consensus 231 --g~~~~p~wSPDG~~Laf~s~~~g--~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g--- 303 (428)
T PRK01029 231 --GNQLMPTFSPRKKLLAFISDRYG--NPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDG--- 303 (428)
T ss_pred --CCccceEECCCCCEEEEEECCCC--CcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCC---
Confidence 22356899999999995553221 1233455577644 3444444333344567899999999998875321
Q ss_pred CCeEEEEeCCC--eeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEE
Q 000736 249 CPSIVFYERNG--LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFM 326 (1323)
Q Consensus 249 ~~~V~~~e~nG--l~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~ 326 (1323)
...|.+++.++ .... .+.. ....+...+|||||+.||....+.....|.+|+..+... ..+...........
T Consensus 304 ~~~ly~~~~~~~g~~~~--~lt~-~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~---~~Lt~~~~~~~~p~ 377 (428)
T PRK01029 304 RPRIYIMQIDPEGQSPR--LLTK-KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD---YQLTTSPENKESPS 377 (428)
T ss_pred CceEEEEECcccccceE--Eecc-CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe---EEccCCCCCccceE
Confidence 23454444432 1111 1221 123467899999999999887654334689999876543 12221111225678
Q ss_pred EccCCCc
Q 000736 327 WHPTKPL 333 (1323)
Q Consensus 327 Wsp~~~~ 333 (1323)
|+|++..
T Consensus 378 wSpDG~~ 384 (428)
T PRK01029 378 WAIDSLH 384 (428)
T ss_pred ECCCCCE
Confidence 9999875
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.7e-11 Score=136.78 Aligned_cols=198 Identities=17% Similarity=0.104 Sum_probs=130.9
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEeCCC-CeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecc
Q 000736 79 TAFDYLMEKEALIVGTSSGLLLLHSVDG-NATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEE 157 (1323)
Q Consensus 79 ~~v~~spdg~~La~as~dG~I~lw~~~~-~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~ 157 (1323)
..|+|++||..|++++.||++++|+... ..+...-.|.+.|.++.|||||+.||+.++| ...+|+.. .+..+..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~----~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVN----TGAALAR 222 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEec----cCchhhh
Confidence 7799999999999999999999999544 3332334467889999999999999999999 78887532 2222211
Q ss_pred cC-CCceeccCccccCCCCeEEEEEecCC---c-EEEEeeccccccCCCCEEEEEECCCCceeeeecc--CCCceeEEEE
Q 000736 158 LA-EGFDVHEPELSSSFSFKSPISWRGDG---K-YFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL--KAFMGAVLEW 230 (1323)
Q Consensus 158 ~~-~~~~Vs~tqf~~~~~~i~~isWspDG---~-~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~--~~~~v~slaw 230 (1323)
.. . ..+-....+.|+-|+ . ++|++- ..........+.+|+. . ........ ....+++++-
T Consensus 223 ~t~~----------~k~~~~~~cRF~~d~~~~~l~laa~~-~~~~~v~~~~~~~w~~-~-~~l~~~~~~~~~~siSsl~V 289 (398)
T KOG0771|consen 223 KTPF----------SKDEMFSSCRFSVDNAQETLRLAASQ-FPGGGVRLCDISLWSG-S-NFLRLRKKIKRFKSISSLAV 289 (398)
T ss_pred cCCc----------ccchhhhhceecccCCCceEEEEEec-CCCCceeEEEeeeecc-c-cccchhhhhhccCcceeEEE
Confidence 11 0 111233567777777 2 333122 1110011123455666 3 33332222 2234799999
Q ss_pred ccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEe
Q 000736 231 MPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1323)
Q Consensus 231 sPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~ 304 (1323)
|+||+++|.|+-+ ++|.+++..-++.-++. +.-|...|..|.|+||++.+++.+.+. ...+-.+
T Consensus 290 S~dGkf~AlGT~d------GsVai~~~~~lq~~~~v-k~aH~~~VT~ltF~Pdsr~~~svSs~~---~~~v~~l 353 (398)
T KOG0771|consen 290 SDDGKFLALGTMD------GSVAIYDAKSLQRLQYV-KEAHLGFVTGLTFSPDSRYLASVSSDN---EAAVTKL 353 (398)
T ss_pred cCCCcEEEEeccC------CcEEEEEeceeeeeEee-hhhheeeeeeEEEcCCcCcccccccCC---ceeEEEE
Confidence 9999999999985 56999987666555443 333456899999999999999988776 4544443
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.4e-10 Score=129.07 Aligned_cols=258 Identities=15% Similarity=0.115 Sum_probs=159.4
Q ss_pred CEEEEEe-CCCcEEEEeCCCCe-EEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceec
Q 000736 88 EALIVGT-SSGLLLLHSVDGNA-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVH 165 (1323)
Q Consensus 88 ~~La~as-~dG~I~lw~~~~~~-~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs 165 (1323)
+.++++. ..--|.+|...-.. ....--..+.|.|++=||+|.+|+.++..|.|.+|. ..++.-+..
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWe----lssG~LL~v-------- 118 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWE----LSSGILLNV-------- 118 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEE----eccccHHHH--------
Confidence 4555554 33457788875321 110112367899999999999999999999999974 333333332
Q ss_pred cCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCC
Q 000736 166 EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKS 245 (1323)
Q Consensus 166 ~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~ 245 (1323)
|++|+..|+++.|+.||.+|. +++ .|+.|.||.. + ..++=.+++ +
T Consensus 119 ---~~aHYQ~ITcL~fs~dgs~ii-Tgs------kDg~V~vW~l-~--------------~lv~a~~~~----------~ 163 (476)
T KOG0646|consen 119 ---LSAHYQSITCLKFSDDGSHII-TGS------KDGAVLVWLL-T--------------DLVSADNDH----------S 163 (476)
T ss_pred ---HHhhccceeEEEEeCCCcEEE-ecC------CCccEEEEEE-E--------------eecccccCC----------C
Confidence 236777889999999999999 654 4689999988 1 111111111 0
Q ss_pred CCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEcc--CCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcE
Q 000736 246 ENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNC--MSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGI 323 (1323)
Q Consensus 246 ~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSp--Dg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~ 323 (1323)
..-+..|.-.+ -.|.++.-.+ -...|++++.|. ++++|+++...-. ..+.|+ ....
T Consensus 164 ---~~p~~~f~~Ht-------------lsITDl~ig~Gg~~~rl~TaS~D~---t~k~wdlS~g~LL--lti~fp-~si~ 221 (476)
T KOG0646|consen 164 ---VKPLHIFSDHT-------------LSITDLQIGSGGTNARLYTASEDR---TIKLWDLSLGVLL--LTITFP-SSIK 221 (476)
T ss_pred ---ccceeeeccCc-------------ceeEEEEecCCCccceEEEecCCc---eEEEEEeccceee--EEEecC-Ccce
Confidence 01233444322 2344444333 345788999999 9999999976532 344442 2337
Q ss_pred EEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCC--CEEEEEEec
Q 000736 324 RFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPT--AVTEMAFYS 401 (1323)
Q Consensus 324 ~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~~~~--~V~~VaFSp 401 (1323)
++.-||-.. ++++++.+|.+....+. ...+-..++ ..+.+.+....++ --..|.+ +|++++.|-
T Consensus 222 av~lDpae~-~~yiGt~~G~I~~~~~~-~~~~~~~~v-------~~k~~~~~~t~~~-----~~~Gh~~~~~ITcLais~ 287 (476)
T KOG0646|consen 222 AVALDPAER-VVYIGTEEGKIFQNLLF-KLSGQSAGV-------NQKGRHEENTQIN-----VLVGHENESAITCLAIST 287 (476)
T ss_pred eEEEccccc-EEEecCCcceEEeeehh-cCCcccccc-------cccccccccceee-----eeccccCCcceeEEEEec
Confidence 888899765 48899988877543221 111000000 0111111111010 0124555 899999999
Q ss_pred CCCCCEEEEEECCCcEEEEECCCCCcccc
Q 000736 402 KSSKNCLAAILSDGCLCVVDLPAPDMLED 430 (1323)
Q Consensus 402 dg~~~~LAs~s~Dgti~lw~~~~~~~~~~ 430 (1323)
|| +.|++|+.||+|++|+.....++.+
T Consensus 288 Dg--tlLlSGd~dg~VcvWdi~S~Q~iRt 314 (476)
T KOG0646|consen 288 DG--TLLLSGDEDGKVCVWDIYSKQCIRT 314 (476)
T ss_pred Cc--cEEEeeCCCCCEEEEecchHHHHHH
Confidence 99 9999999999999999987666543
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-10 Score=124.85 Aligned_cols=292 Identities=16% Similarity=0.179 Sum_probs=167.9
Q ss_pred CCcEEEEeCCC--CeE--EEeceecCcEEEEEEcCC-CCeEEEEeC---Ccc----EEEEeecCceeeeeeecccCCCce
Q 000736 96 SGLLLLHSVDG--NAT--EVVGRVEGGVRFISPSPD-GDLLGVTTG---FGQ----ILVMTHDWDLLYENPLEELAEGFD 163 (1323)
Q Consensus 96 dG~I~lw~~~~--~~~--e~vg~~~~~I~~~awSPD-G~~LA~~s~---d~t----V~l~t~~~d~~~e~~l~~~~~~~~ 163 (1323)
|+.|.+...+. +.+ +.+-++.+.|+.++=||- ..+||++.. |.. +-+|+.- ++.......+.. .
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ip-e~~~~S~~~tlE---~ 114 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIP-EPLGQSNSSTLE---C 114 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecc-cccCccccchhh---H
Confidence 45555544432 222 345567788999999994 566777644 221 2344311 111100000000 0
Q ss_pred ec--cCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCcee-ee-----eccCCCceeEEEEcc--C
Q 000736 164 VH--EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQ-AS-----SELKAFMGAVLEWMP--S 233 (1323)
Q Consensus 164 Vs--~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~-~t-----~e~~~~~v~slawsP--d 233 (1323)
|. .| .+-+.+.+|-|-|++..+|++. +..|.+|+++++..+ .. +..+...-.+-+||| |
T Consensus 115 v~~Ldt---eavg~i~cvew~Pns~klasm~--------dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHd 183 (370)
T KOG1007|consen 115 VASLDT---EAVGKINCVEWEPNSDKLASMD--------DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHD 183 (370)
T ss_pred hhcCCH---HHhCceeeEEEcCCCCeeEEec--------cCceEEEEcccCcchheeecccccccccceecccccCCCCc
Confidence 00 00 1124789999999999999332 578999999877652 21 111233346789999 8
Q ss_pred CCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCC-eeEEEEccCCCCeEEEEEeeCCeeEEE
Q 000736 234 GANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNHWYLK 312 (1323)
Q Consensus 234 G~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~-~LA~~~~d~~~~~V~LW~~~n~~wylk 312 (1323)
|+.+|++++ .++.+||.. ..+..+.++..+...|.++.|||+-+ +||+++.|+ .|+|||+.+-..- -
T Consensus 184 gnqv~tt~d-------~tl~~~D~R-T~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdg---yvriWD~R~tk~p-v 251 (370)
T KOG1007|consen 184 GNQVATTSD-------STLQFWDLR-TMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDG---YVRIWDTRKTKFP-V 251 (370)
T ss_pred cceEEEeCC-------CcEEEEEcc-chhhhcchhhhhcceeeeccCCCCceEEEEEcCCCc---cEEEEeccCCCcc-c
Confidence 999999886 479999953 12222344433345699999999987 578888888 8999999864321 2
Q ss_pred eEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCC-------EEEEeecCCcCCCCCcee
Q 000736 313 YEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGS-------KILVTPLSLSLMPPPMYL 385 (1323)
Q Consensus 313 q~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~-------~l~lt~l~~~~vPppm~~ 385 (1323)
+++..|..-.+.|.|+|...+.+..+..|-.+... ..-++. +...+..--|.. .-++-||.... .
T Consensus 252 ~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Ls-ca~svS-SE~qi~~~~dese~e~~dseer~kpL~dg~------l 323 (370)
T KOG1007|consen 252 QELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLS-CASSVS-SEQQIEFEDDESESEDEDSEERVKPLQDGQ------L 323 (370)
T ss_pred cccCCCceEEEEEEecCccceEEEecCCCceeEEE-eccccc-cccccccccccccCcchhhHHhcccccccc------c
Confidence 34444333347899999888744444444433211 111111 111111100100 01111222111 1
Q ss_pred eee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECC
Q 000736 386 FSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1323)
Q Consensus 386 ~~l-~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~ 423 (1323)
.++ +|.+.|.+++||.-.. =++|+++.||.+.|=+++
T Consensus 324 ~tydehEDSVY~~aWSsadP-WiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 324 ETYDEHEDSVYALAWSSADP-WIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccceEEEeeccCCC-eeEEEeccCceEEeecCC
Confidence 233 5899999999987652 679999999999887765
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.7e-10 Score=133.43 Aligned_cols=207 Identities=18% Similarity=0.140 Sum_probs=129.3
Q ss_pred cEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCC---ccEEEEeecCceeeeeeecccCCCceeccCccccCCC
Q 000736 98 LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGF---GQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1323)
Q Consensus 98 ~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d---~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~ 174 (1323)
.|.++|.++.....+-.+...+.+.+|||||+.||.++.+ .+|.+|+..-... ..+. .+..
T Consensus 171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--~~~~--------------~~~~ 234 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--EKVA--------------SFPG 234 (417)
T ss_pred eEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE--EEee--------------cCCC
Confidence 5778888765544333345568999999999999998743 3676664321100 1111 1112
Q ss_pred CeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEE
Q 000736 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1323)
Q Consensus 175 ~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~ 254 (1323)
....++|+|||+.|+.+.+. .+...|.+||..+|...... .+.+.....+|+|||+.|+.++.... ...|..
T Consensus 235 ~~~~~~~spDg~~l~~~~~~----~~~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~s~dg~~l~~~s~~~g---~~~iy~ 306 (417)
T TIGR02800 235 MNGAPAFSPDGSKLAVSLSK----DGNPDIYVMDLDGKQLTRLT-NGPGIDTEPSWSPDGKSIAFTSDRGG---SPQIYM 306 (417)
T ss_pred CccceEECCCCCEEEEEECC----CCCccEEEEECCCCCEEECC-CCCCCCCCEEECCCCCEEEEEECCCC---CceEEE
Confidence 34578999999988733322 23467999999677654433 23445567899999999988876432 346777
Q ss_pred EeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcE
Q 000736 255 YERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQ 334 (1323)
Q Consensus 255 ~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~ 334 (1323)
++.++.....+.. ....+..++|||||+.|+....+.+...|.+|+..+..+ +.+.- ........|+|++...
T Consensus 307 ~d~~~~~~~~l~~---~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~---~~l~~-~~~~~~p~~spdg~~l 379 (417)
T TIGR02800 307 MDADGGEVRRLTF---RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE---RVLTD-TGLDESPSFAPNGRMI 379 (417)
T ss_pred EECCCCCEEEeec---CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe---EEccC-CCCCCCceECCCCCEE
Confidence 7765533222221 123466889999999999988765344688888876433 11211 1111445799998753
Q ss_pred E
Q 000736 335 L 335 (1323)
Q Consensus 335 L 335 (1323)
+
T Consensus 380 ~ 380 (417)
T TIGR02800 380 L 380 (417)
T ss_pred E
Confidence 3
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.9e-11 Score=141.24 Aligned_cols=165 Identities=19% Similarity=0.234 Sum_probs=120.8
Q ss_pred ceeEEeeec-CCCEEEEEeCCCcEEEEecccccccccceeeccccc-cccccCCCCCCEEEEEEecC-CCEEEEEeCCCc
Q 000736 22 ILQFSALDI-EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAE-IEHIDLEPGDSITAFDYLME-KEALIVGTSSGL 98 (1323)
Q Consensus 22 ~~~~~~~d~-~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~V~~v~~spd-g~~La~as~dG~ 98 (1323)
.+..+.||+ |...|.++++|++|..|.+. .+... +...-|+. |..| +++|.++.|+|- .+.|++++.|-|
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~--a~gl~-e~~~tPe~~lt~h----~eKI~slRfHPLAadvLa~asyd~T 701 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLT--ANGLP-ENEMTPEKILTIH----GEKITSLRFHPLAADVLAVASYDST 701 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEec--cCCCC-cccCCcceeeecc----cceEEEEEecchhhhHhhhhhccce
Confidence 577889995 67889999999999999993 33321 11222222 3333 579999999995 478999999999
Q ss_pred EEEEeCCCCeE--EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceee-eeeecccCCCceeccCccccCCCC
Q 000736 99 LLLHSVDGNAT--EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY-ENPLEELAEGFDVHEPELSSSFSF 175 (1323)
Q Consensus 99 I~lw~~~~~~~--e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~-e~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1323)
|+|||+.+.+. ..+| |.++|..+||||||+.+|++..||+|.+.. +.+ +.++.... .+| ...
T Consensus 702 i~lWDl~~~~~~~~l~g-HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~----Prs~e~pv~Eg~--gpv--------gtR 766 (1012)
T KOG1445|consen 702 IELWDLANAKLYSRLVG-HTDQIFGIAWSPDGRRIATVCKDGTLRVYE----PRSREQPVYEGK--GPV--------GTR 766 (1012)
T ss_pred eeeeehhhhhhhheecc-CcCceeEEEECCCCcceeeeecCceEEEeC----CCCCCCccccCC--CCc--------cCc
Confidence 99999988653 4677 589999999999999999999999998863 221 22222111 111 123
Q ss_pred eEEEEEecCCcEEEEeeccccccCCCCEEEEEECCC
Q 000736 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS 211 (1323)
Q Consensus 176 i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~ 211 (1323)
--+|.|-=||++++ |.+.|. ...|+|.+||.++
T Consensus 767 gARi~wacdgr~vi-v~Gfdk--~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 767 GARILWACDGRIVI-VVGFDK--SSERQVQMYDAQT 799 (1012)
T ss_pred ceeEEEEecCcEEE-Eecccc--cchhhhhhhhhhh
Confidence 36899999999999 776765 3568999999853
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.5e-10 Score=127.21 Aligned_cols=227 Identities=14% Similarity=0.180 Sum_probs=157.8
Q ss_pred CCCEEEEEEecC-CCEEEEEeCCCcEEEEeCCCC---------eEEEeceecCcEEEEEEcCCC-CeEEEEeCCccEEEE
Q 000736 75 GDSITAFDYLME-KEALIVGTSSGLLLLHSVDGN---------ATEVVGRVEGGVRFISPSPDG-DLLGVTTGFGQILVM 143 (1323)
Q Consensus 75 ~~~V~~v~~spd-g~~La~as~dG~I~lw~~~~~---------~~e~vg~~~~~I~~~awSPDG-~~LA~~s~d~tV~l~ 143 (1323)
.+.|.+++|.|- ...||+||+|-+|++|.+..+ ..+..| |...|--++|.|-- +.|+++++|++|.+|
T Consensus 81 t~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~g-H~rrVg~V~wHPtA~NVLlsag~Dn~v~iW 159 (472)
T KOG0303|consen 81 TAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYG-HQRRVGLVQWHPTAPNVLLSAGSDNTVSIW 159 (472)
T ss_pred cccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEee-cceeEEEEeecccchhhHhhccCCceEEEE
Confidence 478999999994 568899999999999998531 123555 58889999999974 678999999999998
Q ss_pred eecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCC
Q 000736 144 THDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF 223 (1323)
Q Consensus 144 t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~ 223 (1323)
+-. ++..+-.. .|.+.|++++|+-||.+|+|++ .|++|||||..+|++.+...+|.|
T Consensus 160 nv~----tgeali~l------------~hpd~i~S~sfn~dGs~l~Ttc-------kDKkvRv~dpr~~~~v~e~~~heG 216 (472)
T KOG0303|consen 160 NVG----TGEALITL------------DHPDMVYSMSFNRDGSLLCTTC-------KDKKVRVIDPRRGTVVSEGVAHEG 216 (472)
T ss_pred ecc----CCceeeec------------CCCCeEEEEEeccCCceeeeec-------ccceeEEEcCCCCcEeeecccccC
Confidence 632 22211111 2567899999999999999442 479999999999999988766766
Q ss_pred ce-eEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec-cCCCCcEEEEEEccCCCeeEEEEc-cCCCCeEE
Q 000736 224 MG-AVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN-EQIDSTVELLKWNCMSDLLAAVVR-FEEYDSVK 300 (1323)
Q Consensus 224 ~v-~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~-~~~~~~V~~laWSpDg~~LA~~~~-d~~~~~V~ 300 (1323)
.- .-+-|=-+|. |++++..+ -....+.+|+.+.+.... .+. ....+.|.-=-|.||..++-.++. |+ .|+
T Consensus 217 ~k~~Raifl~~g~-i~tTGfsr--~seRq~aLwdp~nl~eP~-~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~---~IR 289 (472)
T KOG0303|consen 217 AKPARAIFLASGK-IFTTGFSR--MSERQIALWDPNNLEEPI-ALQELDTSNGVLLPFYDPDTSIVYLCGKGDS---SIR 289 (472)
T ss_pred CCcceeEEeccCc-eeeecccc--ccccceeccCcccccCcc-eeEEeccCCceEEeeecCCCCEEEEEecCCc---ceE
Confidence 42 4566888999 66665532 124679999987654321 111 112345666678999998877654 33 799
Q ss_pred EEEeeCCeeEEEeEEEEecCCc-EEEEEccCCC
Q 000736 301 ICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKP 332 (1323)
Q Consensus 301 LW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~~~ 332 (1323)
-+.+.|..-|+-.--.|...++ ..+.+-|..+
T Consensus 290 YyEit~d~P~~hyln~f~S~epQRG~g~mPKRG 322 (472)
T KOG0303|consen 290 YFEITNEPPFVHYLNTFSSKEPQRGMGFMPKRG 322 (472)
T ss_pred EEEecCCCceeEEecccccCCcccccccccccc
Confidence 9999886554433223433343 4555555443
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-09 Score=132.20 Aligned_cols=205 Identities=15% Similarity=0.075 Sum_probs=124.4
Q ss_pred cEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCc---cEEEEeecCceeeeeeecccCCCceeccCccccCCC
Q 000736 98 LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFG---QILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1323)
Q Consensus 98 ~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~---tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~ 174 (1323)
.|.++|.+++....+..+...+...+|||||+.||.++.++ .|.+|+.... ....+.. + .+
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g--~~~~l~~-----------~---~g 243 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTG--RREQITN-----------F---EG 243 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCC--CEEEccC-----------C---CC
Confidence 37777888765543333466789999999999999987442 4555432111 1111111 1 12
Q ss_pred CeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEE
Q 000736 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1323)
Q Consensus 175 ~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~ 254 (1323)
.....+|||||+.||.+.+. .+...|.+||..+|+..... .+.+.....+|+|||+.|+.++.... ...|..
T Consensus 244 ~~~~~~~SpDG~~la~~~~~----~g~~~Iy~~d~~~~~~~~lt-~~~~~~~~~~~spDg~~i~f~s~~~g---~~~iy~ 315 (430)
T PRK00178 244 LNGAPAWSPDGSKLAFVLSK----DGNPEIYVMDLASRQLSRVT-NHPAIDTEPFWGKDGRTLYFTSDRGG---KPQIYK 315 (430)
T ss_pred CcCCeEECCCCCEEEEEEcc----CCCceEEEEECCCCCeEEcc-cCCCCcCCeEECCCCCEEEEEECCCC---CceEEE
Confidence 23468999999999833322 23457999999777665432 34445567899999999988875422 346767
Q ss_pred EeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCc
Q 000736 255 YERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPL 333 (1323)
Q Consensus 255 ~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~ 333 (1323)
++.++.....++... ......+|||||+.|+....+.....|.+|+..+.... .+.. ........|+|++..
T Consensus 316 ~d~~~g~~~~lt~~~---~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~---~lt~-~~~~~~p~~spdg~~ 387 (430)
T PRK00178 316 VNVNGGRAERVTFVG---NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR---ILTD-TSLDESPSVAPNGTM 387 (430)
T ss_pred EECCCCCEEEeecCC---CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE---EccC-CCCCCCceECCCCCE
Confidence 775443322222211 12346789999999999876543335778887765431 1211 111134589998865
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.9e-09 Score=129.55 Aligned_cols=286 Identities=15% Similarity=0.146 Sum_probs=183.3
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1323)
.+++.++.+.++.+.++..|+.|..|.-.+..+.. .... -+.+| .+.|.+++||+||..|.+|+.-|.+.+
T Consensus 207 ~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~-~t~t----~lHWH----~~~V~~L~fS~~G~~LlSGG~E~VLv~ 277 (792)
T KOG1963|consen 207 NITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS-ETCT----LLHWH----HDEVNSLSFSSDGAYLLSGGREGVLVL 277 (792)
T ss_pred cceeEEeccccceEEEeccCCcEEEEecccccccc-ccce----EEEec----ccccceeEEecCCceEeecccceEEEE
Confidence 35778889999999988889999999872111111 1111 15666 468999999999999999999999999
Q ss_pred EeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEE
Q 000736 102 HSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISW 181 (1323)
Q Consensus 102 w~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isW 181 (1323)
|...|++-+.+....+.|..+.|||||++.++..+|+.|.+.... +......+... .+.+...-....+-...++.
T Consensus 278 Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~-dl~~k~tIsgi---~~~~~~~k~~~~~l~t~~~i 353 (792)
T KOG1963|consen 278 WQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKAS-DLEIKSTISGI---KPPTPSTKTRPQSLTTGVSI 353 (792)
T ss_pred EeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEecc-chhhhhhccCc---cCCCccccccccccceeEEE
Confidence 999998766677777889999999999999999999999876431 11111111100 00000000001123356777
Q ss_pred ecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeec-----cCCC------ceeEEEEccCCCeEEEEecCCC----C
Q 000736 182 RGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-----LKAF------MGAVLEWMPSGANIAAVYDRKS----E 246 (1323)
Q Consensus 182 spDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e-----~~~~------~v~slawsPdG~lIAs~s~d~~----~ 246 (1323)
.|--..++ .. +..+.|++||..+-..++..+ .+++ .+.+++.+-.|+++|+...... .
T Consensus 354 dpr~~~~v-ln------~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~ 426 (792)
T KOG1963|consen 354 DPRTNSLV-LN------GHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFF 426 (792)
T ss_pred cCCCCcee-ec------CCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhcc
Confidence 77444444 33 234799999987666555432 1222 2478888889999999854211 1
Q ss_pred CCCCeEEEEeCCCeeEEEEEec----cCCCC-cEEEEEEccCCC-eeEEEEccCCCCeEEEEEeeC--------CeeEEE
Q 000736 247 NKCPSIVFYERNGLERSSFDIN----EQIDS-TVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSN--------NHWYLK 312 (1323)
Q Consensus 247 ~~~~~V~~~e~nGl~~~~f~l~----~~~~~-~V~~laWSpDg~-~LA~~~~d~~~~~V~LW~~~n--------~~wylk 312 (1323)
+....++||-.|+... .|.|. .||+. .|..+..+|-.. ..++++.|+ .+++|-... --|.++
T Consensus 427 ~~e~~LKFW~~n~~~k-t~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg---~~KiW~~~~~~n~~k~~s~W~c~ 502 (792)
T KOG1963|consen 427 DGEVSLKFWQYNPNSK-TFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDG---DFKIWVFTDDSNIYKKSSNWTCK 502 (792)
T ss_pred CceEEEEEEEEcCCcc-eeEEEEEEecCCCceeEEEEEecCcccceeEEeccCC---eEEEEEEecccccCcCccceEEe
Confidence 1246789999887543 35554 45544 344555555555 888999998 899999832 235444
Q ss_pred eEEEEecCCcEEEEEccCC
Q 000736 313 YEIRYLRRDGIRFMWHPTK 331 (1323)
Q Consensus 313 q~l~~~~~~~~~v~Wsp~~ 331 (1323)
..-.|+.......+|+.||
T Consensus 503 ~i~sy~k~~i~a~~fs~dG 521 (792)
T KOG1963|consen 503 AIGSYHKTPITALCFSQDG 521 (792)
T ss_pred eeeccccCcccchhhcCCC
Confidence 3333432222556666665
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-09 Score=125.11 Aligned_cols=238 Identities=11% Similarity=0.052 Sum_probs=153.1
Q ss_pred ccCCCCCCEEEEEEecC-------CCEEEEEeCCCcEEEEeCCCC-e---EEEec------------------eecCcEE
Q 000736 70 IDLEPGDSITAFDYLME-------KEALIVGTSSGLLLLHSVDGN-A---TEVVG------------------RVEGGVR 120 (1323)
Q Consensus 70 ~~~~~~~~V~~v~~spd-------g~~La~as~dG~I~lw~~~~~-~---~e~vg------------------~~~~~I~ 120 (1323)
|+++-...+.+++|.-- |.++|+|+-+-.|.|||++=. . +-.+| +|.+.|.
T Consensus 168 HD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl 247 (463)
T KOG0270|consen 168 HDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVL 247 (463)
T ss_pred cceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHH
Confidence 44444456677777543 579999999999999998621 1 11233 4677888
Q ss_pred EEEEcCC-CCeEEEEeCCccEEEEee-cCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCC-cEEEEeeccccc
Q 000736 121 FISPSPD-GDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDG-KYFATLSEFCNS 197 (1323)
Q Consensus 121 ~~awSPD-G~~LA~~s~d~tV~l~t~-~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG-~~lAtvss~d~~ 197 (1323)
+++|+-. -..||+||.|.||++|+- .+++...+. .|.+.|.++.|.|-- ++|. +|+.
T Consensus 248 ~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~----------------~~~k~Vq~l~wh~~~p~~LL-sGs~--- 307 (463)
T KOG0270|consen 248 ALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT----------------HHGKKVQTLEWHPYEPSVLL-SGSY--- 307 (463)
T ss_pred HHHhccccceeEEecCCCceEEEEEcCCCCcceehh----------------hcCCceeEEEecCCCceEEE-eccc---
Confidence 9999876 467999999999999863 233332222 244677999999975 5666 5654
Q ss_pred cCCCCEEEEEECCC-CceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEE
Q 000736 198 SKLHKRLKVWERDS-GTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVE 276 (1323)
Q Consensus 198 ~~~d~~IrVWd~~~-G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~ 276 (1323)
|++|++.|.+. +...... ..++-|..++|.|.......++-+ .+.|+-||......-.|++..| +..|.
T Consensus 308 ---D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~se~~f~~~td-----dG~v~~~D~R~~~~~vwt~~AH-d~~IS 377 (463)
T KOG0270|consen 308 ---DGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPHSENSFFVSTD-----DGTVYYFDIRNPGKPVWTLKAH-DDEIS 377 (463)
T ss_pred ---cceEEeeeccCccccCceE-EeccceEEEEecCCCceeEEEecC-----CceEEeeecCCCCCceeEEEec-cCCcc
Confidence 58999999743 1111111 256778999999998776665544 3579888842221334556554 56899
Q ss_pred EEEEccCCC-eeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEec
Q 000736 277 LLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTL 340 (1323)
Q Consensus 277 ~laWSpDg~-~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~ 340 (1323)
+|++|+.-. +|++++.|+ +|+||++..-.-....+-.+.-+-..+++.+|+-+..++++..
T Consensus 378 gl~~n~~~p~~l~t~s~d~---~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~ 439 (463)
T KOG0270|consen 378 GLSVNIQTPGLLSTASTDK---VVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGE 439 (463)
T ss_pred eEEecCCCCcceeeccccc---eEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCc
Confidence 999998654 688889888 9999999753321111111100001445666666665555443
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1e-09 Score=121.19 Aligned_cols=307 Identities=13% Similarity=0.076 Sum_probs=181.5
Q ss_pred eecCcEEEEEEcC-----CCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCc--
Q 000736 114 RVEGGVRFISPSP-----DGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGK-- 186 (1323)
Q Consensus 114 ~~~~~I~~~awSP-----DG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~-- 186 (1323)
.|...|..++|++ +-+.+|+++++ .+.+..-..|.-. ..++...+. .++.....++|+-|-.
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~i-r~lq~y~D~---------d~~Esfytcsw~yd~~~~ 104 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGI-RLLQSYADE---------DHDESFYTCSWSYDSNTG 104 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccce-eeeeeccCC---------CCCcceEEEEEEecCCCC
Confidence 3456788888873 23455665554 6666653333200 011111000 2445668899987754
Q ss_pred --EEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCC-CeEEEEecCCCCCCCCeEEEEeCC-CeeE
Q 000736 187 --YFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG-ANIAAVYDRKSENKCPSIVFYERN-GLER 262 (1323)
Q Consensus 187 --~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG-~lIAs~s~d~~~~~~~~V~~~e~n-Gl~~ 262 (1323)
++| +++ -.+.|||.|...+++.....+|.+.++.|-+.|+- ++|.|+|.| +.|++|+.. +.-.
T Consensus 105 ~p~la-~~G------~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD------~svRlwnI~~~~Cv 171 (385)
T KOG1034|consen 105 NPFLA-AGG------YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKD------HSVRLWNIQTDVCV 171 (385)
T ss_pred CeeEE-eec------ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCC------ceEEEEeccCCeEE
Confidence 677 553 35899999999999999999999999999999986 688899886 579999953 2211
Q ss_pred EEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeC--CeeEEEeEEEEecCCcEEEEEccCCCcE------
Q 000736 263 SSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN--NHWYLKYEIRYLRRDGIRFMWHPTKPLQ------ 334 (1323)
Q Consensus 263 ~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n--~~wylkq~l~~~~~~~~~v~Wsp~~~~~------ 334 (1323)
-.|---+.|...|.++.||+||..+|+++-|. ++++|+++. .+-++. .+.-|+|++..+
T Consensus 172 ~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDh---slk~W~l~~~~f~~~lE----------~s~~~~~~~t~~pfpt~~ 238 (385)
T KOG1034|consen 172 AVFGGVEGHRDEVLSVDFSLDGDRIASCGMDH---SLKLWRLNVKEFKNKLE----------LSITYSPNKTTRPFPTPK 238 (385)
T ss_pred EEecccccccCcEEEEEEcCCCCeeeccCCcc---eEEEEecChhHHhhhhh----------hhcccCCCCccCcCCccc
Confidence 11111123457899999999999999999988 999999983 221221 234455555320
Q ss_pred --EEEE-ecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeec-CC--c--CCCCCceeeee----cC-CCCEEEEEEec
Q 000736 335 --LICW-TLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPL-SL--S--LMPPPMYLFSL----KF-PTAVTEMAFYS 401 (1323)
Q Consensus 335 --L~~~-~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l-~~--~--~vPppm~~~~l----~~-~~~V~~VaFSp 401 (1323)
+-.. +.+ .+.+++--+-+-+.-++.-.-++.|..|-. .. . ++-||-+.-++ .. ...||-|-|+-
T Consensus 239 ~~fp~fst~d---iHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~ 315 (385)
T KOG1034|consen 239 THFPDFSTTD---IHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAF 315 (385)
T ss_pred cccccccccc---cccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEee
Confidence 1110 000 011111000011122233334455666644 11 1 34334333333 11 33577777766
Q ss_pred CCCCCEEEEEECCCcEEEEECCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecC
Q 000736 402 KSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHG 468 (1323)
Q Consensus 402 dg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~ 468 (1323)
|.-.++||.+...|.|.+|+++..+.. .. ..+ .. ......|++.+|+.|+.+|....++
T Consensus 316 d~~~~~la~gnq~g~v~vwdL~~~ep~--~~-ttl--~~---s~~~~tVRQ~sfS~dgs~lv~vcdd 374 (385)
T KOG1034|consen 316 DPWQKMLALGNQSGKVYVWDLDNNEPP--KC-TTL--TH---SKSGSTVRQTSFSRDGSILVLVCDD 374 (385)
T ss_pred cHHHHHHhhccCCCcEEEEECCCCCCc--cC-ceE--Ee---ccccceeeeeeecccCcEEEEEeCC
Confidence 643388999999999999999763321 00 000 00 1123489999999999988776654
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.9e-10 Score=126.04 Aligned_cols=211 Identities=11% Similarity=0.086 Sum_probs=139.3
Q ss_pred EeceecCcEEEEEEcC-CCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCc-EE
Q 000736 111 VVGRVEGGVRFISPSP-DGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGK-YF 188 (1323)
Q Consensus 111 ~vg~~~~~I~~~awSP-DG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~-~l 188 (1323)
.+..|.+.|..++|+| +.+.||+||+|-+|.+|..-.+-+. .. ...+|- .+.+|.-.|-.|.|.|-.. .|
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~-~~-----ltepvv--~L~gH~rrVg~V~wHPtA~NVL 147 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT-RD-----LTEPVV--ELYGHQRRVGLVQWHPTAPNVL 147 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccc-cC-----cccceE--EEeecceeEEEEeecccchhhH
Confidence 5666899999999999 4578999999999999953211110 00 011110 1125667788999999875 44
Q ss_pred EEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEe
Q 000736 189 ATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDI 267 (1323)
Q Consensus 189 Atvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l 267 (1323)
+ ++ +.|.+|.|||..+|+-+-++. |+..+.+++|+-||+++++++.|+ .|++||. .|....+-
T Consensus 148 l-sa------g~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDK------kvRv~dpr~~~~v~e~-- 211 (472)
T KOG0303|consen 148 L-SA------GSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDK------KVRVIDPRRGTVVSEG-- 211 (472)
T ss_pred h-hc------cCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccc------eeEEEcCCCCcEeeec--
Confidence 4 33 357999999999999888877 999999999999999999999974 6999994 44433321
Q ss_pred ccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeE-EEeEEEEecCCc-EEEEEccCCCcEEEEEecCCcEE
Q 000736 268 NEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY-LKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQIT 345 (1323)
Q Consensus 268 ~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wy-lkq~l~~~~~~~-~~v~Wsp~~~~~L~~~~~~g~~~ 345 (1323)
..|....-..+-|-.+|.++.+|-+......+-||+-.|..-- --+++ ...++ ..=-|||++...-.++.+||.+.
T Consensus 212 ~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~el--DtSnGvl~PFyD~dt~ivYl~GKGD~~IR 289 (472)
T KOG0303|consen 212 VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQEL--DTSNGVLLPFYDPDTSIVYLCGKGDSSIR 289 (472)
T ss_pred ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEe--ccCCceEEeeecCCCCEEEEEecCCcceE
Confidence 1222234456678899996555543332337999998874311 01222 12234 44468888776333444566665
Q ss_pred EE
Q 000736 346 TY 347 (1323)
Q Consensus 346 ~~ 347 (1323)
.+
T Consensus 290 Yy 291 (472)
T KOG0303|consen 290 YF 291 (472)
T ss_pred EE
Confidence 43
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-10 Score=126.28 Aligned_cols=195 Identities=14% Similarity=0.087 Sum_probs=148.9
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe-EE---EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEee----cC
Q 000736 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-TE---VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH----DW 147 (1323)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~-~e---~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~----~~ 147 (1323)
..|++.+|++|+..+|++-.+.+|.||...+.. .+ ++..|+..|+++.|+|-+..|++++.|.+-.+|+. .|
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~W 90 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTW 90 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCee
Confidence 479999999999999999999999999988755 33 56668999999999999999999999999999975 35
Q ss_pred ceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceee-----eeccCC
Q 000736 148 DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA-----SSELKA 222 (1323)
Q Consensus 148 d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~-----t~e~~~ 222 (1323)
.+.-.+- .+.....+|.|+|.+..|| +++ +.+.|-||-- +++-.. +-.|+.
T Consensus 91 kptlvLl----------------RiNrAAt~V~WsP~enkFA-VgS------gar~isVcy~-E~ENdWWVsKhikkPir 146 (361)
T KOG1523|consen 91 KPTLVLL----------------RINRAATCVKWSPKENKFA-VGS------GARLISVCYY-EQENDWWVSKHIKKPIR 146 (361)
T ss_pred ccceeEE----------------EeccceeeEeecCcCceEE-ecc------CccEEEEEEE-ecccceehhhhhCCccc
Confidence 5433221 1224568999999999999 774 4589999987 655444 456777
Q ss_pred CceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeC-----------C--------CeeEEEEEeccCCCCcEEEEEEccC
Q 000736 223 FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-----------N--------GLERSSFDINEQIDSTVELLKWNCM 283 (1323)
Q Consensus 223 ~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~-----------n--------Gl~~~~f~l~~~~~~~V~~laWSpD 283 (1323)
..|.+++|.|++-++|.|+.|. ..++|.. + |..-.|+. ...++|..+.|||+
T Consensus 147 Stv~sldWhpnnVLlaaGs~D~------k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~---~~ggwvh~v~fs~s 217 (361)
T KOG1523|consen 147 STVTSLDWHPNNVLLAAGSTDG------KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS---SSGGWVHGVLFSPS 217 (361)
T ss_pred cceeeeeccCCcceecccccCc------ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc---cCCCceeeeEeCCC
Confidence 8899999999999999999763 3555531 1 00111111 22468999999999
Q ss_pred CCeeEEEEccCCCCeEEEEEeeC
Q 000736 284 SDLLAAVVRFEEYDSVKICFFSN 306 (1323)
Q Consensus 284 g~~LA~~~~d~~~~~V~LW~~~n 306 (1323)
|..||-.+.|. +|-+=|-.+
T Consensus 218 G~~lawv~Hds---~v~~~da~~ 237 (361)
T KOG1523|consen 218 GNRLAWVGHDS---TVSFVDAAG 237 (361)
T ss_pred CCEeeEecCCC---ceEEeecCC
Confidence 99999999998 676655443
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-09 Score=123.41 Aligned_cols=290 Identities=14% Similarity=0.160 Sum_probs=187.1
Q ss_pred EEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCc--EEEEeCCCC--eEE
Q 000736 35 LFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGL--LLLHSVDGN--ATE 110 (1323)
Q Consensus 35 l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~--I~lw~~~~~--~~e 110 (1323)
|-++|....+..||.+..+.. +.+..+.- ...+.+|.|....- |++++..|+ |.+|..++. ++.
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~---------~~~~~~t~--~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp 72 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETK---------SEYVHQTA--EPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVP 72 (673)
T ss_pred eeeeccCCceEEeecccccCc---------cccccCCC--CCcceeeeccccce-EEEeecCCceeEEEecccCCCCccc
Confidence 445555444999998421111 11222222 23489999998764 777766555 677887764 344
Q ss_pred Eeceec----CcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCc
Q 000736 111 VVGRVE----GGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGK 186 (1323)
Q Consensus 111 ~vg~~~----~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~ 186 (1323)
.++... -.|.|+++| .++++|+..++|++|+ .......+.. ++|.+.|..+.+.-...
T Consensus 73 ~~~k~~gd~~~Cv~~~s~S---~y~~sgG~~~~Vkiwd----l~~kl~hr~l-----------kdh~stvt~v~YN~~De 134 (673)
T KOG4378|consen 73 RVRKLTGDNAFCVACASQS---LYEISGGQSGCVKIWD----LRAKLIHRFL-----------KDHQSTVTYVDYNNTDE 134 (673)
T ss_pred eeeccccchHHHHhhhhcc---eeeeccCcCceeeehh----hHHHHHhhhc-----------cCCcceeEEEEecCCcc
Confidence 444322 236667777 8899999999998864 3222222211 25667889999999999
Q ss_pred EEEEeeccccccCCCCEEEEEECCCCceeeeeccCCC-ceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEE
Q 000736 187 YFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF-MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSF 265 (1323)
Q Consensus 187 ~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~-~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f 265 (1323)
|||++ +. .+-|-|-+..++..-.++....| .+.-|.|||.-+.+.+...| ++.|.+||.+|.... |
T Consensus 135 yiAsv-s~------gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd-----~G~VtlwDv~g~sp~-~ 201 (673)
T KOG4378|consen 135 YIASV-SD------GGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASD-----KGAVTLWDVQGMSPI-F 201 (673)
T ss_pred eeEEe-cc------CCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeecc-----CCeEEEEeccCCCcc-c
Confidence 99944 32 25678888867665555543334 35689999999865544333 357999999986522 2
Q ss_pred EeccCCCCcEEEEEEccCCC-eeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCc-EEEEEccCCCcEEEEEecCCc
Q 000736 266 DINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQ 343 (1323)
Q Consensus 266 ~l~~~~~~~V~~laWSpDg~-~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~~~~~L~~~~~~g~ 343 (1323)
.....|......|+|||-.+ +|++.+.|. .|-+||..... +...|.+ ..+ ..++|+++|.. |+.++..|.
T Consensus 202 ~~~~~HsAP~~gicfspsne~l~vsVG~Dk---ki~~yD~~s~~--s~~~l~y--~~Plstvaf~~~G~~-L~aG~s~G~ 273 (673)
T KOG4378|consen 202 HASEAHSAPCRGICFSPSNEALLVSVGYDK---KINIYDIRSQA--STDRLTY--SHPLSTVAFSECGTY-LCAGNSKGE 273 (673)
T ss_pred chhhhccCCcCcceecCCccceEEEecccc---eEEEeeccccc--ccceeee--cCCcceeeecCCceE-EEeecCCce
Confidence 22233456778999999765 677888888 79999987532 2234444 234 77999998865 888888888
Q ss_pred EEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCC
Q 000736 344 ITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKS 403 (1323)
Q Consensus 344 ~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~~~~~V~~VaFSpdg 403 (1323)
+..|+.. . .|.|.... -.|...|.+|||-|..
T Consensus 274 ~i~YD~R-------------------------~--~k~Pv~v~-sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 274 LIAYDMR-------------------------S--TKAPVAVR-SAHDASVTRVAFQPSP 305 (673)
T ss_pred EEEEecc-------------------------c--CCCCceEe-eecccceeEEEeeecc
Confidence 7655432 1 23344321 1477889999998885
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.1e-10 Score=131.71 Aligned_cols=171 Identities=19% Similarity=0.289 Sum_probs=118.0
Q ss_pred CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCE-EEEEeCCCcEEEEeCC----
Q 000736 31 EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEA-LIVGTSSGLLLLHSVD---- 105 (1323)
Q Consensus 31 ~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~-La~as~dG~I~lw~~~---- 105 (1323)
++--|.++-..+++..+|+ ...+ ++.|- .+........|++|.|.|-++. +.++-.+|.+.++|..
T Consensus 184 ~g~dllIGf~tGqvq~idp--~~~~----~sklf---ne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~ 254 (636)
T KOG2394|consen 184 KGLDLLIGFTTGQVQLIDP--INFE----VSKLF---NEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCG 254 (636)
T ss_pred CCcceEEeeccCceEEecc--hhhH----HHHhh---hhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccccc
Confidence 3445666666677777777 3322 22211 1112223578999999997654 4456789999999652
Q ss_pred -----------CCeEE---Eec-----------eecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCC
Q 000736 106 -----------GNATE---VVG-----------RVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAE 160 (1323)
Q Consensus 106 -----------~~~~e---~vg-----------~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~ 160 (1323)
+.+.. ..+ .-+++|+..+|||||+.||+++.||.++|++ |+. +. +...
T Consensus 255 ~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~--fdt--~e-Llg~-- 327 (636)
T KOG2394|consen 255 ATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFD--FDT--QE-LLGV-- 327 (636)
T ss_pred CCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEee--ccH--HH-HHHH--
Confidence 11111 111 1146899999999999999999999998864 222 11 1100
Q ss_pred CceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEcc
Q 000736 161 GFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP 232 (1323)
Q Consensus 161 ~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsP 232 (1323)
++.--++..+++|||||+|+| ++ ++|-.|.||+..+++.+...++|..||..|+|-|
T Consensus 328 --------mkSYFGGLLCvcWSPDGKyIv-tG------GEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 328 --------MKSYFGGLLCVCWSPDGKYIV-TG------GEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred --------HHhhccceEEEEEcCCccEEE-ec------CCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 111125679999999999999 76 3567999999999999999999999999999998
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.6e-10 Score=130.35 Aligned_cols=259 Identities=15% Similarity=0.093 Sum_probs=160.0
Q ss_pred eEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEe
Q 000736 24 QFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHS 103 (1323)
Q Consensus 24 ~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~ 103 (1323)
.+.+-+....+||++.+++.|.++|.. ......+..+ |.. +...-..|.++.|-|-...|++++.|.+|+.||
T Consensus 56 sFs~~~n~eHiLavadE~G~i~l~dt~--~~~fr~ee~~----lk~-~~aH~nAifDl~wapge~~lVsasGDsT~r~Wd 128 (720)
T KOG0321|consen 56 SFSAAPNKEHILAVADEDGGIILFDTK--SIVFRLEERQ----LKK-PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWD 128 (720)
T ss_pred cccCCCCccceEEEecCCCceeeecch--hhhcchhhhh----hcc-cccccceeEeeccCCCceeEEEccCCceeeeee
Confidence 444555667899999999999999983 2221101111 221 122246899999999666888999999999999
Q ss_pred CCCCeEE----EeceecCcEEEEEEcCCCC-eEEEEeCCccEEEEeecCce---eeeeeecccC-C-C--ceec-----c
Q 000736 104 VDGNATE----VVGRVEGGVRFISPSPDGD-LLGVTTGFGQILVMTHDWDL---LYENPLEELA-E-G--FDVH-----E 166 (1323)
Q Consensus 104 ~~~~~~e----~vg~~~~~I~~~awSPDG~-~LA~~s~d~tV~l~t~~~d~---~~e~~l~~~~-~-~--~~Vs-----~ 166 (1323)
+.+.++. .+| |.+.|.++||.|+.. .+++|+.||.|.||+..-+. ..+....... + + .+.. -
T Consensus 129 vk~s~l~G~~~~~G-H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~ 207 (720)
T KOG0321|consen 129 VKTSRLVGGRLNLG-HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRI 207 (720)
T ss_pred eccceeecceeecc-cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccc
Confidence 9886553 456 589999999999864 57888899999999632111 1111100000 0 0 0111 1
Q ss_pred CccccCCCCeEE---EEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecc--------C---CCceeEEEEcc
Q 000736 167 PELSSSFSFKSP---ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL--------K---AFMGAVLEWMP 232 (1323)
Q Consensus 167 tqf~~~~~~i~~---isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~--------~---~~~v~slawsP 232 (1323)
..++++...+.+ +-+.-|-..||++| ..|+.|||||..........++ + ...+.++.--.
T Consensus 208 ~k~kA~s~ti~ssvTvv~fkDe~tlaSag------a~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs 281 (720)
T KOG0321|consen 208 RKWKAASNTIFSSVTVVLFKDESTLASAG------AADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS 281 (720)
T ss_pred cccccccCceeeeeEEEEEeccceeeecc------CCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC
Confidence 112234444444 77788888999443 2478999999855433332222 1 11245666666
Q ss_pred CCCeE-EEEecCCCCCCCCeEEEEeCCCeeEEE-EEeccCC--CCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCC
Q 000736 233 SGANI-AAVYDRKSENKCPSIVFYERNGLERSS-FDINEQI--DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1323)
Q Consensus 233 dG~lI-As~s~d~~~~~~~~V~~~e~nGl~~~~-f~l~~~~--~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~ 307 (1323)
.|.++ |++. | +.|-+|+.-++..+- +...+.. ...|.+ .-||||..|++++.|. ...+|.+++.
T Consensus 282 sGt~L~AsCt-D------~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks-~lSpd~~~l~SgSsd~---~ayiw~vs~~ 349 (720)
T KOG0321|consen 282 SGTYLFASCT-D------NSIYFYNMRSLSISPVAEFSGKLNSSFYVKS-ELSPDDCSLLSGSSDE---QAYIWVVSSP 349 (720)
T ss_pred CCCeEEEEec-C------CcEEEEeccccCcCchhhccCcccceeeeee-ecCCCCceEeccCCCc---ceeeeeecCc
Confidence 77765 6665 3 469999865543221 0011110 112333 3689999999999998 7889998863
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.6e-08 Score=115.33 Aligned_cols=250 Identities=17% Similarity=0.183 Sum_probs=157.7
Q ss_pred ceeEEeeecCCCEEEEEeCC----CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEe-CC
Q 000736 22 ILQFSALDIEQNRLFFASSA----NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT-SS 96 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~----~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as-~d 96 (1323)
.+..+++|++++.||++++. +.|..|.....++.. ..+.+.+. .+.....++++|+++.|.++. .+
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L-~~~~~~~~--------~g~~p~~i~~~~~g~~l~vany~~ 108 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTL-TLLNSVPS--------GGSSPCHIAVDPDGRFLYVANYGG 108 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEE-EEEEEEEE--------SSSCEEEEEECTTSSEEEEEETTT
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCccee-EEeeeecc--------CCCCcEEEEEecCCCEEEEEEccC
Confidence 67889999999999999874 467777763122332 11222111 256788999999999999886 69
Q ss_pred CcEEEEeCCC-CeEE-E---e---c-------eecCcEEEEEEcCCCCeEEEEe-CCccEEEEeecCce--eee---eee
Q 000736 97 GLLLLHSVDG-NATE-V---V---G-------RVEGGVRFISPSPDGDLLGVTT-GFGQILVMTHDWDL--LYE---NPL 155 (1323)
Q Consensus 97 G~I~lw~~~~-~~~e-~---v---g-------~~~~~I~~~awSPDG~~LA~~s-~d~tV~l~t~~~d~--~~e---~~l 155 (1323)
|+|.+++++. +.+. . + | .......++.|+|||++|.++. +...|.++..+-+. +.. ..+
T Consensus 109 g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~ 188 (345)
T PF10282_consen 109 GSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV 188 (345)
T ss_dssp TEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC
T ss_pred CeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc
Confidence 9999999875 4442 1 1 1 0124578999999999888774 44467666432211 211 111
Q ss_pred cccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECC--CCceeee-----e-ccCC--Cce
Q 000736 156 EELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD--SGTLQAS-----S-ELKA--FMG 225 (1323)
Q Consensus 156 ~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~--~G~l~~t-----~-e~~~--~~v 225 (1323)
. ...+-..+.|+|||+++- +.. ...++|.+++.. +|.+... . +... ...
T Consensus 189 ~---------------~G~GPRh~~f~pdg~~~Y-v~~-----e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (345)
T PF10282_consen 189 P---------------PGSGPRHLAFSPDGKYAY-VVN-----ELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAP 247 (345)
T ss_dssp S---------------TTSSEEEEEE-TTSSEEE-EEE-----TTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSE
T ss_pred c---------------cCCCCcEEEEcCCcCEEE-Eec-----CCCCcEEEEeecccCCceeEEEEeeeccccccccCCc
Confidence 1 123447899999999876 432 235788888875 5644332 1 1111 145
Q ss_pred eEEEEccCCCeEEEEecCCCCCCCCeEEEEeCC---CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEE
Q 000736 226 AVLEWMPSGANIAAVYDRKSENKCPSIVFYERN---GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKIC 302 (1323)
Q Consensus 226 ~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~n---Gl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW 302 (1323)
..|+++|||++|.++.+. ...|.+|+.+ |.....-.++.. ......++++|||++|+++..+. +.|.+|
T Consensus 248 ~~i~ispdg~~lyvsnr~-----~~sI~vf~~d~~~g~l~~~~~~~~~-G~~Pr~~~~s~~g~~l~Va~~~s--~~v~vf 319 (345)
T PF10282_consen 248 AEIAISPDGRFLYVSNRG-----SNSISVFDLDPATGTLTLVQTVPTG-GKFPRHFAFSPDGRYLYVANQDS--NTVSVF 319 (345)
T ss_dssp EEEEE-TTSSEEEEEECT-----TTEEEEEEECTTTTTEEEEEEEEES-SSSEEEEEE-TTSSEEEEEETTT--TEEEEE
T ss_pred eeEEEecCCCEEEEEecc-----CCEEEEEEEecCCCceEEEEEEeCC-CCCccEEEEeCCCCEEEEEecCC--CeEEEE
Confidence 789999999999888775 4689999863 333221112211 23478999999999999998765 478888
Q ss_pred Eee--CCee
Q 000736 303 FFS--NNHW 309 (1323)
Q Consensus 303 ~~~--n~~w 309 (1323)
+++ +..+
T Consensus 320 ~~d~~tG~l 328 (345)
T PF10282_consen 320 DIDPDTGKL 328 (345)
T ss_dssp EEETTTTEE
T ss_pred EEeCCCCcE
Confidence 875 4443
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.20 E-value=6e-10 Score=127.23 Aligned_cols=241 Identities=10% Similarity=0.010 Sum_probs=163.6
Q ss_pred cCCCEEEEEeCCCcEEEEecccccccccceeeccccc---------cccccCC-CCCCEEEEEEecCC-CEEEEEeCCCc
Q 000736 30 IEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAE---------IEHIDLE-PGDSITAFDYLMEK-EALIVGTSSGL 98 (1323)
Q Consensus 30 ~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~---------~~~~~~~-~~~~V~~v~~spdg-~~La~as~dG~ 98 (1323)
.-++.+.+++=+..|-.||+. ..... ....+|-+. -+.+... ..+.|.+++|.-.- ..||+||+|.|
T Consensus 190 ~~gNyvAiGtmdp~IeIWDLD-I~d~v-~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~T 267 (463)
T KOG0270|consen 190 GAGNYVAIGTMDPEIEIWDLD-IVDAV-LPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKT 267 (463)
T ss_pred CCcceEEEeccCceeEEeccc-ccccc-ccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCce
Confidence 346788888889999999994 11111 111111100 0111000 03456777776654 58899999999
Q ss_pred EEEEeCCCCeEE-EeceecCcEEEEEEcCC-CCeEEEEeCCccEEEEe-ecCceeeeeeecccCCCceeccCccccCCCC
Q 000736 99 LLLHSVDGNATE-VVGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSF 175 (1323)
Q Consensus 99 I~lw~~~~~~~e-~vg~~~~~I~~~awSPD-G~~LA~~s~d~tV~l~t-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1323)
|++||++++++. +..+|.+.|.+++|.|. .+.|.+||-|++|.+-+ |+ ---....+. .++.
T Consensus 268 V~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~-~~~s~~~wk---------------~~g~ 331 (463)
T KOG0270|consen 268 VKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD-PSNSGKEWK---------------FDGE 331 (463)
T ss_pred EEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC-ccccCceEE---------------eccc
Confidence 999999998875 66678889999999986 67899999999998854 22 000111221 1356
Q ss_pred eEEEEEecCCcEEEEeeccccccCCCCEEEEEECC-CCceeeeeccCCCceeEEEEccCC-CeEEEEecCCCCCCCCeEE
Q 000736 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAFMGAVLEWMPSG-ANIAAVYDRKSENKCPSIV 253 (1323)
Q Consensus 176 i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~-~G~l~~t~e~~~~~v~slawsPdG-~lIAs~s~d~~~~~~~~V~ 253 (1323)
|-.++|.|-......++ +.+|+++=+|.+ .|++..+...|++.|.+|++++.- .++++++.+ ..|+
T Consensus 332 VEkv~w~~~se~~f~~~------tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d------~~Vk 399 (463)
T KOG0270|consen 332 VEKVAWDPHSENSFFVS------TDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTD------KVVK 399 (463)
T ss_pred eEEEEecCCCceeEEEe------cCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecccc------ceEE
Confidence 78999999887544244 346899999954 679999999999999999999875 467887775 4699
Q ss_pred EEeCCCeeEE-----EEEeccCCCCcEEEEEEccCCC-eeEEEEccCCCCeEEEEEeeCCe
Q 000736 254 FYERNGLERS-----SFDINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNH 308 (1323)
Q Consensus 254 ~~e~nGl~~~-----~f~l~~~~~~~V~~laWSpDg~-~LA~~~~d~~~~~V~LW~~~n~~ 308 (1323)
+|+..+..-+ .|.+ +...+.++.|+-- +||.|+... .+++|++.+++
T Consensus 400 lw~~~~~~~~~v~~~~~~~-----~rl~c~~~~~~~a~~la~GG~k~---~~~vwd~~~~~ 452 (463)
T KOG0270|consen 400 LWKFDVDSPKSVKEHSFKL-----GRLHCFALDPDVAFTLAFGGEKA---VLRVWDIFTNS 452 (463)
T ss_pred EEeecCCCCcccccccccc-----cceeecccCCCcceEEEecCccc---eEEEeecccCh
Confidence 9985443221 1211 2345666677643 577777766 89999987754
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.5e-10 Score=129.99 Aligned_cols=273 Identities=15% Similarity=0.132 Sum_probs=174.5
Q ss_pred EEEcCC---CCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeecccccc
Q 000736 122 ISPSPD---GDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSS 198 (1323)
Q Consensus 122 ~awSPD---G~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~ 198 (1323)
..|++- ...||.+.+||.|.+.+.. .+...... .+. .-|..|.+.|..+.|-| |+... ++.
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~-----~~~fr~ee-~~l---k~~~aH~nAifDl~wap-ge~~l-Vsa----- 118 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTK-----SIVFRLEE-RQL---KKPLAHKNAIFDLKWAP-GESLL-VSA----- 118 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecch-----hhhcchhh-hhh---cccccccceeEeeccCC-CceeE-EEc-----
Confidence 566553 5689999999999886421 11111110 000 12337899999999999 87555 432
Q ss_pred CCCCEEEEEECCCCceeee--eccCCCceeEEEEccCCC-eEEEEecCCCCCCCCeEEEEeC--CCeeEE-EEE------
Q 000736 199 KLHKRLKVWERDSGTLQAS--SELKAFMGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYER--NGLERS-SFD------ 266 (1323)
Q Consensus 199 ~~d~~IrVWd~~~G~l~~t--~e~~~~~v~slawsPdG~-lIAs~s~d~~~~~~~~V~~~e~--nGl~~~-~f~------ 266 (1323)
.||.++|+||..++.+.-. .-+|.+.+.+++|+|... .+++|++| +.|.+||. |+..+- +|.
T Consensus 119 sGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRD------g~illWD~R~n~~d~~e~~~~~~~~~ 192 (720)
T KOG0321|consen 119 SGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRD------GEILLWDCRCNGVDALEEFDNRIYGR 192 (720)
T ss_pred cCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCC------CcEEEEEEeccchhhHHHHhhhhhcc
Confidence 3579999999988888877 778999999999999765 56888886 46999983 331100 000
Q ss_pred --------------ec--cCCCCcEEE---EEEccCCCeeEEEEc-cCCCCeEEEEEee-CCeeEEEeEEEE---ecC--
Q 000736 267 --------------IN--EQIDSTVEL---LKWNCMSDLLAAVVR-FEEYDSVKICFFS-NNHWYLKYEIRY---LRR-- 320 (1323)
Q Consensus 267 --------------l~--~~~~~~V~~---laWSpDg~~LA~~~~-d~~~~~V~LW~~~-n~~wylkq~l~~---~~~-- 320 (1323)
++ ..+...|.+ +-+.-|...||+++. |+ +|++||+. ||.-|.++.+.. +..
T Consensus 193 ~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~---~iKVWDLRk~~~~~r~ep~~~~~~~t~sk 269 (720)
T KOG0321|consen 193 HNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADS---TIKVWDLRKNYTAYRQEPRGSDKYPTHSK 269 (720)
T ss_pred ccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCc---ceEEEeecccccccccCCCcccCccCccc
Confidence 00 001233444 556688888999887 77 99999986 555554433321 111
Q ss_pred -C-c-EEEEEccCCCcEEEEEecCCcEEEEEEEE-e----------------ee----eCCCeeEEEEeCCEEEEeecCC
Q 000736 321 -D-G-IRFMWHPTKPLQLICWTLDGQITTYNFIW-T----------------TA----VMENSTALVIDGSKILVTPLSL 376 (1323)
Q Consensus 321 -~-~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~-~----------------~~----~~d~~~v~viDg~~l~lt~l~~ 376 (1323)
. + +.+.-|..|++ |...+.|+.++.|+..- + +. +++..++...-....++|-+..
T Consensus 270 rs~G~~nL~lDssGt~-L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~ 348 (720)
T KOG0321|consen 270 RSVGQVNLILDSSGTY-LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSS 348 (720)
T ss_pred ceeeeEEEEecCCCCe-EEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecC
Confidence 1 2 56667766676 45555588887654320 0 00 4444444444444567777766
Q ss_pred cCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCC
Q 000736 377 SLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1323)
Q Consensus 377 ~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~ 424 (1323)
...||-.. +.|.-.|.+|.|.|... .-+|+.+.|.++++|++..
T Consensus 349 ~e~~~~~l---~Ght~eVt~V~w~pS~~-t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 349 PEAPPALL---LGHTREVTTVRWLPSAT-TPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred ccCChhhh---hCcceEEEEEeeccccC-CCceeeccCcceEEEeccC
Confidence 55554322 35777899999999863 4467779999999999954
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-09 Score=123.42 Aligned_cols=202 Identities=12% Similarity=0.074 Sum_probs=137.5
Q ss_pred CCCEEEEEEecCC--CEEEEEeCCCcEEEEeCCCCe-----EEEeceecCcEEEEEEcCCC-CeEEEEeCCccEEEEeec
Q 000736 75 GDSITAFDYLMEK--EALIVGTSSGLLLLHSVDGNA-----TEVVGRVEGGVRFISPSPDG-DLLGVTTGFGQILVMTHD 146 (1323)
Q Consensus 75 ~~~V~~v~~spdg--~~La~as~dG~I~lw~~~~~~-----~e~vg~~~~~I~~~awSPDG-~~LA~~s~d~tV~l~t~~ 146 (1323)
.+.|.+++|+|.- ..+|+|...|+|-+||..+.+ +.....|.+.|.++.|||.. ..+.+.|.||+|.+++-.
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~ 265 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFE 265 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeec
Confidence 4789999999976 478899999999999996422 22334467889999999965 457778899999987533
Q ss_pred CceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCce-eeeeccCCCce
Q 000736 147 WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL-QASSELKAFMG 225 (1323)
Q Consensus 147 ~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l-~~t~e~~~~~v 225 (1323)
... .+.-+..+.+. ....+..++.+.+.+.+... =+.+-+||++++.. ....+-|...|
T Consensus 266 ~~i-~e~v~s~~~d~------------~~fs~~d~~~e~~~vl~~~~-------~G~f~~iD~R~~~s~~~~~~lh~kKI 325 (498)
T KOG4328|consen 266 GNI-SEEVLSLDTDN------------IWFSSLDFSAESRSVLFGDN-------VGNFNVIDLRTDGSEYENLRLHKKKI 325 (498)
T ss_pred chh-hHHHhhcCccc------------eeeeeccccCCCccEEEeec-------ccceEEEEeecCCccchhhhhhhccc
Confidence 221 11111111111 12345566666554441322 14789999876543 33444567789
Q ss_pred eEEEEccCCC-eEEEEecCCCCCCCCeEEEEeCCCeeEE-EEEec-cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEE
Q 000736 226 AVLEWMPSGA-NIAAVYDRKSENKCPSIVFYERNGLERS-SFDIN-EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKIC 302 (1323)
Q Consensus 226 ~slawsPdG~-lIAs~s~d~~~~~~~~V~~~e~nGl~~~-~f~l~-~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW 302 (1323)
.+++++|--. +||+++-| +++++||.--++-. .-.+. .++...|.+..|||+|-.|++.+.|. .|+||
T Consensus 326 ~sv~~NP~~p~~laT~s~D------~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~---~IRv~ 396 (498)
T KOG4328|consen 326 TSVALNPVCPWFLATASLD------QTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDN---EIRVF 396 (498)
T ss_pred ceeecCCCCchheeecccC------cceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCC---ceEEe
Confidence 9999999764 68999886 56999994322111 10122 34566799999999998899999998 89999
Q ss_pred Eee
Q 000736 303 FFS 305 (1323)
Q Consensus 303 ~~~ 305 (1323)
|.+
T Consensus 397 dss 399 (498)
T KOG4328|consen 397 DSS 399 (498)
T ss_pred ecc
Confidence 985
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.7e-08 Score=114.15 Aligned_cols=282 Identities=15% Similarity=0.148 Sum_probs=165.7
Q ss_pred EEEEeCC----CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeC----CCcEEEEeCCC
Q 000736 35 LFFASSA----NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTS----SGLLLLHSVDG 106 (1323)
Q Consensus 35 l~~~s~~----~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~----dG~I~lw~~~~ 106 (1323)
+|+++-+ +.|+.++++..+++. .... . +.....+..++++|+++.|.++.+ +|.|..|.++.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l--~~~~------~--~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~ 71 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTL--TLVQ------T--VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDP 71 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEE--EEEE------E--EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEET
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCc--eEee------e--ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECC
Confidence 5666544 468888773233332 2111 0 111357788999999999999987 46888877654
Q ss_pred --CeEEEeceec---CcEEEEEEcCCCCeEEEEe-CCccEEEEeecC--ceeeeeeecccCCCceeccCccccCCCCeEE
Q 000736 107 --NATEVVGRVE---GGVRFISPSPDGDLLGVTT-GFGQILVMTHDW--DLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1323)
Q Consensus 107 --~~~e~vg~~~---~~I~~~awSPDG~~LA~~s-~d~tV~l~t~~~--d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~ 178 (1323)
+.++.++... .+-..++.+|||++|.++. .+|+|.++..+- .+.............+....| ......+
T Consensus 72 ~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq---~~~h~H~ 148 (345)
T PF10282_consen 72 DTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQ---EGPHPHQ 148 (345)
T ss_dssp TTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTT---SSTCEEE
T ss_pred CcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccccc---cccccee
Confidence 5665444332 3456799999999999997 588888775432 221111111000000000011 1134578
Q ss_pred EEEecCCcEEEEeeccccccCCCCEEEEEECCCCc--eee----eeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeE
Q 000736 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT--LQA----SSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1323)
Q Consensus 179 isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~--l~~----t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V 252 (1323)
+.|+|||+++. +... +...|.+|+.+.+. +.. ......|+ ..++|+|||+++...... ...|
T Consensus 149 v~~~pdg~~v~-v~dl-----G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GP-Rh~~f~pdg~~~Yv~~e~-----s~~v 216 (345)
T PF10282_consen 149 VVFSPDGRFVY-VPDL-----GADRVYVYDIDDDTGKLTPVDSIKVPPGSGP-RHLAFSPDGKYAYVVNEL-----SNTV 216 (345)
T ss_dssp EEE-TTSSEEE-EEET-----TTTEEEEEEE-TTS-TEEEEEEEECSTTSSE-EEEEE-TTSSEEEEEETT-----TTEE
T ss_pred EEECCCCCEEE-EEec-----CCCEEEEEEEeCCCceEEEeeccccccCCCC-cEEEEcCCcCEEEEecCC-----CCcE
Confidence 99999999988 5532 34688998875443 533 12233343 899999999999888765 3578
Q ss_pred EEEeCC---CeeEEEEEec---c--CCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee--CCeeEEEeEEEEecCCc
Q 000736 253 VFYERN---GLERSSFDIN---E--QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS--NNHWYLKYEIRYLRRDG 322 (1323)
Q Consensus 253 ~~~e~n---Gl~~~~f~l~---~--~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~--n~~wylkq~l~~~~~~~ 322 (1323)
..|+.+ |.....-.+. . ........|++||||+.|-++.... ++|-+++++ +....+.+.+......+
T Consensus 217 ~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~--~sI~vf~~d~~~g~l~~~~~~~~~G~~P 294 (345)
T PF10282_consen 217 SVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS--NSISVFDLDPATGTLTLVQTVPTGGKFP 294 (345)
T ss_dssp EEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT--TEEEEEEECTTTTTEEEEEEEEESSSSE
T ss_pred EEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccC--CEEEEEEEecCCCceEEEEEEeCCCCCc
Confidence 887754 3221111222 1 1123688999999999998876543 589999994 33443444444432335
Q ss_pred EEEEEccCCCcEEEEEec-CCcE
Q 000736 323 IRFMWHPTKPLQLICWTL-DGQI 344 (1323)
Q Consensus 323 ~~v~Wsp~~~~~L~~~~~-~g~~ 344 (1323)
..+.++|++.. |.+.++ ++.+
T Consensus 295 r~~~~s~~g~~-l~Va~~~s~~v 316 (345)
T PF10282_consen 295 RHFAFSPDGRY-LYVANQDSNTV 316 (345)
T ss_dssp EEEEE-TTSSE-EEEEETTTTEE
T ss_pred cEEEEeCCCCE-EEEEecCCCeE
Confidence 88999999876 556554 4444
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-07 Score=107.13 Aligned_cols=306 Identities=17% Similarity=0.144 Sum_probs=181.8
Q ss_pred EEEEEeC----CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCC---CcEEEEeCC-
Q 000736 34 RLFFASS----ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSS---GLLLLHSVD- 105 (1323)
Q Consensus 34 ~l~~~s~----~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~d---G~I~lw~~~- 105 (1323)
.+|+++- +..|+.|++ .+..+.....+ +... .+.++-++|+|+++.|-++-.+ |.|.-|..+
T Consensus 4 ~~YiGtyT~~~s~gI~v~~l--d~~~g~l~~~~----~v~~----~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~ 73 (346)
T COG2706 4 TVYIGTYTKRESQGIYVFNL--DTKTGELSLLQ----LVAE----LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDP 73 (346)
T ss_pred EEEEeeecccCCCceEEEEE--eCcccccchhh----hccc----cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcC
Confidence 4677643 447999999 44433222211 1111 3678999999999999887655 667775554
Q ss_pred -CCeEEEecee---cCcEEEEEEcCCCCeEEEEeC-CccEEEEee--cCceeee--eeecccCCCceeccCccccCCCCe
Q 000736 106 -GNATEVVGRV---EGGVRFISPSPDGDLLGVTTG-FGQILVMTH--DWDLLYE--NPLEELAEGFDVHEPELSSSFSFK 176 (1323)
Q Consensus 106 -~~~~e~vg~~---~~~I~~~awSPDG~~LA~~s~-d~tV~l~t~--~~d~~~e--~~l~~~~~~~~Vs~tqf~~~~~~i 176 (1323)
.+++..++.. ..+-.-++.++||+.|.++.- .|.|.+.-. ++.+..- ...++.. -..+.|-++ .+
T Consensus 74 ~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~---~p~~rQ~~~---h~ 147 (346)
T COG2706 74 DDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGS---GPHERQESP---HV 147 (346)
T ss_pred CCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCC---CCCccccCC---cc
Confidence 4666644431 123378999999999999974 456655421 1111111 1111110 000222222 24
Q ss_pred EEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeee----ccCCCceeEEEEccCCCeEEEEecCCCCCCCCeE
Q 000736 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS----ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1323)
Q Consensus 177 ~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~----e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V 252 (1323)
...-+.|||+|++ +-.. +.-+|.+|+.++|.+...- .+..|+ ..|+|+|+|++....... ..+|
T Consensus 148 H~a~~tP~~~~l~-v~DL-----G~Dri~~y~~~dg~L~~~~~~~v~~G~GP-RHi~FHpn~k~aY~v~EL-----~stV 215 (346)
T COG2706 148 HSANFTPDGRYLV-VPDL-----GTDRIFLYDLDDGKLTPADPAEVKPGAGP-RHIVFHPNGKYAYLVNEL-----NSTV 215 (346)
T ss_pred ceeeeCCCCCEEE-Eeec-----CCceEEEEEcccCccccccccccCCCCCc-ceEEEcCCCcEEEEEecc-----CCEE
Confidence 6788999999998 4332 3357899999899886642 333444 899999999999888876 3589
Q ss_pred EEEeCCCeeEEEEE-------ec--cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEe--EEEEecCC
Q 000736 253 VFYERNGLERSSFD-------IN--EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKY--EIRYLRRD 321 (1323)
Q Consensus 253 ~~~e~nGl~~~~f~-------l~--~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq--~l~~~~~~ 321 (1323)
.+|+-|+. .++|. ++ -++..+.-+|..||||+.|-+.-.. .+.|-++.+...--.|.- ........
T Consensus 216 ~v~~y~~~-~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg--~dsI~~f~V~~~~g~L~~~~~~~teg~~ 292 (346)
T COG2706 216 DVLEYNPA-VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRG--HDSIAVFSVDPDGGKLELVGITPTEGQF 292 (346)
T ss_pred EEEEEcCC-CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCC--CCeEEEEEEcCCCCEEEEEEEeccCCcC
Confidence 99987654 33331 22 1234678899999999999775432 346777777643211110 00011112
Q ss_pred cEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCC-cCCCCCcee
Q 000736 322 GIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSL-SLMPPPMYL 385 (1323)
Q Consensus 322 ~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~-~~vPppm~~ 385 (1323)
+..+.++|.+.. |++..+++ |.-.+..+|..+=.|+.+.. ..+|.|+|.
T Consensus 293 PR~F~i~~~g~~-Liaa~q~s--------------d~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv 342 (346)
T COG2706 293 PRDFNINPSGRF-LIAANQKS--------------DNITVFERDKETGRLTLLGRYAVVPEPVCV 342 (346)
T ss_pred CccceeCCCCCE-EEEEccCC--------------CcEEEEEEcCCCceEEecccccCCCCcEEE
Confidence 356677776665 44444322 33345556766666676554 567888885
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.8e-09 Score=126.40 Aligned_cols=203 Identities=9% Similarity=0.008 Sum_probs=124.4
Q ss_pred CCEEEEEEecCCCE-EEEEeCC---CcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeC-C--ccEEEEeecCc
Q 000736 76 DSITAFDYLMEKEA-LIVGTSS---GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG-F--GQILVMTHDWD 148 (1323)
Q Consensus 76 ~~V~~v~~spdg~~-La~as~d---G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~-d--~tV~l~t~~~d 148 (1323)
+.+.+-.|||||+. ++..+.. .+|.++|+.+++.+.+....+.+.+.+|||||+.||.... + ..|.+++....
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 46778999999985 6654443 4688899998877655544566778999999998887643 3 34554442211
Q ss_pred eeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEE
Q 000736 149 LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVL 228 (1323)
Q Consensus 149 ~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~sl 228 (1323)
.. ..+... ........|+|||+.|+.++.. .+...|.+.|..+|+....... +. ...
T Consensus 268 ~~--~~LT~~--------------~~~d~~p~~SPDG~~I~F~Sdr----~g~~~Iy~~dl~~g~~~rlt~~--g~-~~~ 324 (419)
T PRK04043 268 TL--TQITNY--------------PGIDVNGNFVEDDKRIVFVSDR----LGYPNIFMKKLNSGSVEQVVFH--GK-NNS 324 (419)
T ss_pred cE--EEcccC--------------CCccCccEECCCCCEEEEEECC----CCCceEEEEECCCCCeEeCccC--CC-cCc
Confidence 11 111111 0112456899999999855532 2234788889977877554321 11 124
Q ss_pred EEccCCCeEEEEecCCCCC---CCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee
Q 000736 229 EWMPSGANIAAVYDRKSEN---KCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1323)
Q Consensus 229 awsPdG~lIAs~s~d~~~~---~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~ 305 (1323)
+|||||+.||..+...... ....|.+.+..|..... |... ......+|||||+.|+.....+....+.+.+++
T Consensus 325 ~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~--LT~~--~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 325 SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR--LTAN--GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE--CCCC--CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 8999999999887643111 12467777765433322 2211 123368999999999998766432234444443
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-08 Score=125.73 Aligned_cols=268 Identities=18% Similarity=0.150 Sum_probs=165.6
Q ss_pred CCcEEEEeCCCC-eEEEeceecCcEEEEEEcCC-CCeEEEEeCCccEEEEeec--Cce-eeeeeecccCCCceeccCccc
Q 000736 96 SGLLLLHSVDGN-ATEVVGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMTHD--WDL-LYENPLEELAEGFDVHEPELS 170 (1323)
Q Consensus 96 dG~I~lw~~~~~-~~e~vg~~~~~I~~~awSPD-G~~LA~~s~d~tV~l~t~~--~d~-~~e~~l~~~~~~~~Vs~tqf~ 170 (1323)
++.+.+||+... ..+.+=.....|.|+.|+|. ..+||.|+.+|+|.+|+-. .++ ....+. +-+
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~------------~~~ 288 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSA------------LEV 288 (555)
T ss_pred CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccc------------ccc
Confidence 357899999764 44544445788999999996 5677777899999998521 111 122221 122
Q ss_pred cCCCCeEEEEEecCCc--EEEEeeccccccCCCCEEEEEECCC------Cceeeeec------cCCCceeEEEEccCCC-
Q 000736 171 SSFSFKSPISWRGDGK--YFATLSEFCNSSKLHKRLKVWERDS------GTLQASSE------LKAFMGAVLEWMPSGA- 235 (1323)
Q Consensus 171 ~~~~~i~~isWspDG~--~lAtvss~d~~~~~d~~IrVWd~~~------G~l~~t~e------~~~~~v~slawsPdG~- 235 (1323)
.|.+.++.+.|-.+-. -|+++++ |+.|..|+.+- +.+..... .....+.+++|.|.--
T Consensus 289 sh~~~v~~vvW~~~~~~~~f~s~ss-------DG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~ 361 (555)
T KOG1587|consen 289 SHSEPVTAVVWLQNEHNTEFFSLSS-------DGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN 361 (555)
T ss_pred cCCcCeEEEEEeccCCCCceEEEec-------CCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc
Confidence 5778889999966433 2663442 58999998731 11111111 1122357888888543
Q ss_pred eEEEEecCCCCCCCCeEEEEeCCCeeEEE---EEe---ccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee-CCe
Q 000736 236 NIAAVYDRKSENKCPSIVFYERNGLERSS---FDI---NEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS-NNH 308 (1323)
Q Consensus 236 lIAs~s~d~~~~~~~~V~~~e~nGl~~~~---f~l---~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~-n~~ 308 (1323)
....|++. +.|---.+.|.+.+. |.. ...+.+.|..+.|||=+..+...+.|- +|+||... +..
T Consensus 362 ~FiVGTe~------G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW---~vriWs~~~~~~ 432 (555)
T KOG1587|consen 362 HFIVGTEE------GKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDW---TVRIWSEDVIAS 432 (555)
T ss_pred eEEEEcCC------cEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccc---eeEeccccCCCC
Confidence 34445543 344433566655543 111 122457899999999998766666677 89999987 432
Q ss_pred eEEEeEEEEe-cCC-cEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceee
Q 000736 309 WYLKYEIRYL-RRD-GIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLF 386 (1323)
Q Consensus 309 wylkq~l~~~-~~~-~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~ 386 (1323)
- .+.+. ..+ ...++|||..|..+++...+|.+ -+|||... ..-|++..
T Consensus 433 P----l~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l-------------------------~iWDLl~~-~~~Pv~s~ 482 (555)
T KOG1587|consen 433 P----LLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNL-------------------------DIWDLLQD-DEEPVLSQ 482 (555)
T ss_pred c----chhhhhccceeeeeEEcCcCceEEEEEcCCCce-------------------------ehhhhhcc-ccCCcccc
Confidence 1 11111 112 37799999998877666655544 34444332 22344432
Q ss_pred eecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCC
Q 000736 387 SLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1323)
Q Consensus 387 ~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~ 424 (1323)
.+. ....+.+.|+++| +.||+|...|++++|++..
T Consensus 483 ~~~-~~~l~~~~~s~~g--~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 483 KVC-SPALTRVRWSPNG--KLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccc-ccccceeecCCCC--cEEEEecCCCcEEEEEcCc
Confidence 222 3344778899989 9999999999999999964
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.2e-09 Score=114.63 Aligned_cols=230 Identities=14% Similarity=0.161 Sum_probs=147.3
Q ss_pred CCEEEEEEecCCC----EEEEEeCCCcEEEEeCCCCeEE--EeceecCcEEEEEEcCCC-CeEEEEeCCccEEEEeecCc
Q 000736 76 DSITAFDYLMEKE----ALIVGTSSGLLLLHSVDGNATE--VVGRVEGGVRFISPSPDG-DLLGVTTGFGQILVMTHDWD 148 (1323)
Q Consensus 76 ~~V~~v~~spdg~----~La~as~dG~I~lw~~~~~~~e--~vg~~~~~I~~~awSPDG-~~LA~~s~d~tV~l~t~~~d 148 (1323)
..-..++|+-|.. +||+|+.-|-|++.|+..+++. .+| |.+.|+.+.+-|+- ++|+++|.|.+|++|+..
T Consensus 90 Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~g-hG~sINeik~~p~~~qlvls~SkD~svRlwnI~-- 166 (385)
T KOG1034|consen 90 ESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRG-HGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ-- 166 (385)
T ss_pred cceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceec-cCccchhhhcCCCCCcEEEEecCCceEEEEecc--
Confidence 3556788877654 7999999999999999887764 566 57889999999995 699999999999988643
Q ss_pred eeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEE
Q 000736 149 LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVL 228 (1323)
Q Consensus 149 ~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~sl 228 (1323)
++.++--.. -.-+|-+.|.+|.|++||.+|| +++ -|.++++|+...-+. +..++.++
T Consensus 167 --~~~Cv~VfG--------G~egHrdeVLSvD~~~~gd~i~-ScG------mDhslk~W~l~~~~f------~~~lE~s~ 223 (385)
T KOG1034|consen 167 --TDVCVAVFG--------GVEGHRDEVLSVDFSLDGDRIA-SCG------MDHSLKLWRLNVKEF------KNKLELSI 223 (385)
T ss_pred --CCeEEEEec--------ccccccCcEEEEEEcCCCCeee-ccC------CcceEEEEecChhHH------hhhhhhhc
Confidence 222221111 0016778899999999999999 443 368999999832221 22333455
Q ss_pred EEccCCCe--------------------------------EEEEecCCCCCCCCeEEEEeCCCe--e-------------
Q 000736 229 EWMPSGAN--------------------------------IAAVYDRKSENKCPSIVFYERNGL--E------------- 261 (1323)
Q Consensus 229 awsPdG~l--------------------------------IAs~s~d~~~~~~~~V~~~e~nGl--~------------- 261 (1323)
.|+|++.. |.|-+. .+.|.+|...-+ .
T Consensus 224 ~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSksc------enaI~~w~pgkl~e~~~~vkp~es~~Ti 297 (385)
T KOG1034|consen 224 TYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSC------ENAIVCWKPGKLEESIHNVKPPESATTI 297 (385)
T ss_pred ccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeeccc------CceEEEEecchhhhhhhccCCCccceee
Confidence 56665544 333222 457999976211 0
Q ss_pred EEEEEeccCCCCcEEE--EEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCc--EEEEEccCCCcEEEE
Q 000736 262 RSSFDINEQIDSTVEL--LKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG--IRFMWHPTKPLQLIC 337 (1323)
Q Consensus 262 ~~~f~l~~~~~~~V~~--laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~--~~v~Wsp~~~~~L~~ 337 (1323)
.++|.++ ...|+- .+|.|=+++||.+...+ .|.+|++.|..--..-++..+.... ...+|+.++.. |.+
T Consensus 298 ~~~~~~~---~c~iWfirf~~d~~~~~la~gnq~g---~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~-lv~ 370 (385)
T KOG1034|consen 298 LGEFDYP---MCDIWFIRFAFDPWQKMLALGNQSG---KVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSI-LVL 370 (385)
T ss_pred eeEeccC---ccceEEEEEeecHHHHHHhhccCCC---cEEEEECCCCCCccCceEEeccccceeeeeeecccCcE-EEE
Confidence 1111111 123444 45567799999999887 8999999876432112222222111 44667777654 445
Q ss_pred EecCCcE
Q 000736 338 WTLDGQI 344 (1323)
Q Consensus 338 ~~~~g~~ 344 (1323)
.+.+|.+
T Consensus 371 vcdd~~V 377 (385)
T KOG1034|consen 371 VCDDGTV 377 (385)
T ss_pred EeCCCcE
Confidence 5556654
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.7e-09 Score=119.05 Aligned_cols=252 Identities=12% Similarity=0.096 Sum_probs=151.7
Q ss_pred CcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCc-EEEEeeccc
Q 000736 117 GGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGK-YFATLSEFC 195 (1323)
Q Consensus 117 ~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~-~lAtvss~d 195 (1323)
.-+..++|.|-=--+|+++.|.+|++.++.-+..... +.. ....+.+++|+|-+. -|| ++.
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~L--ks~-------------sQrnvtclawRPlsasela-vgC-- 160 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKL--KSV-------------SQRNVTCLAWRPLSASELA-VGC-- 160 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCCCCcee--cch-------------hhcceeEEEeccCCcceee-eee--
Confidence 3477899999666678888999998887654322111 111 113569999999885 455 653
Q ss_pred cccCCCCEEEEEECC-CCceee-----------ee-ccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeE
Q 000736 196 NSSKLHKRLKVWERD-SGTLQA-----------SS-ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLER 262 (1323)
Q Consensus 196 ~~~~~d~~IrVWd~~-~G~l~~-----------t~-e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~ 262 (1323)
..-|.||... ++..-. .+ .+...+|.++.|.+||..+++++.+ ...|.+||.+....
T Consensus 161 -----r~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~g-----sssi~iWdpdtg~~ 230 (445)
T KOG2139|consen 161 -----RAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFG-----SSSIMIWDPDTGQK 230 (445)
T ss_pred -----cceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccC-----cceEEEEcCCCCCc
Confidence 2568999752 221111 11 1223568999999999999999886 45799999753211
Q ss_pred EEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCC
Q 000736 263 SSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDG 342 (1323)
Q Consensus 263 ~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g 342 (1323)
..|+-.+-+.+.-|.|||||..|-.+.-|. +.++|+..+.-|..++.+ .++....-.|+|+|...|.... |
T Consensus 231 --~pL~~~glgg~slLkwSPdgd~lfaAt~da---vfrlw~e~q~wt~erw~l--gsgrvqtacWspcGsfLLf~~s--g 301 (445)
T KOG2139|consen 231 --IPLIPKGLGGFSLLKWSPDGDVLFAATCDA---VFRLWQENQSWTKERWIL--GSGRVQTACWSPCGSFLLFACS--G 301 (445)
T ss_pred --ccccccCCCceeeEEEcCCCCEEEEecccc---eeeeehhcccceecceec--cCCceeeeeecCCCCEEEEEEc--C
Confidence 122211235688999999999999999998 899998776544333322 2233367889999987555554 4
Q ss_pred cEEEEEEEEeeeeCCCeeEEEEeCCE-EEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEEC
Q 000736 343 QITTYNFIWTTAVMENSTALVIDGSK-ILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILS 413 (1323)
Q Consensus 343 ~~~~~~~~~~~~~~d~~~v~viDg~~-l~lt~l~~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~ 413 (1323)
+-..|...|+-.+.. .-.+.+-+. +++-++....+-.+ ++ -.-+.+.++||-|.| .+||+.-.
T Consensus 302 sp~lysl~f~~~~~~--~~~~~~~k~~lliaDL~e~ti~ag---~~-l~cgeaq~lawDpsG--eyLav~fK 365 (445)
T KOG2139|consen 302 SPRLYSLTFDGEDSV--FLRPQSIKRVLLIADLQEVTICAG---QR-LCCGEAQCLAWDPSG--EYLAVIFK 365 (445)
T ss_pred CceEEEEeecCCCcc--ccCcccceeeeeeccchhhhhhcC---cc-cccCccceeeECCCC--CEEEEEEc
Confidence 444455544322100 000111111 12222221111000 00 024567899999999 89998643
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-07 Score=112.63 Aligned_cols=316 Identities=12% Similarity=0.038 Sum_probs=171.5
Q ss_pred EEEeCCCcEEEEeCCCCeE-EEeceecCcE-EEEEEcCCCCeEEEEeCCccEEEEe-ecCceeeeeeecccCCCceeccC
Q 000736 91 IVGTSSGLLLLHSVDGNAT-EVVGRVEGGV-RFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEP 167 (1323)
Q Consensus 91 a~as~dG~I~lw~~~~~~~-e~vg~~~~~I-~~~awSPDG~~LA~~s~d~tV~l~t-~~~d~~~e~~l~~~~~~~~Vs~t 167 (1323)
++-..+|.|.+.|..+.++ ..+.. .+.+ ..+.+||||+++.+++.||.|.+++ ...+.+.++....
T Consensus 10 V~~~~~~~v~viD~~t~~~~~~i~~-~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~---------- 78 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKVVARIPT-GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG---------- 78 (369)
T ss_dssp EEEGGGTEEEEEETTT-SEEEEEE--STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS----------
T ss_pred EEecCCCEEEEEECCCCeEEEEEcC-CCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC----------
Confidence 3455789999999988653 33322 1233 3467999999999999999998886 3455555554432
Q ss_pred ccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecc-------CCCceeEEEEccCCCeEEEE
Q 000736 168 ELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL-------KAFMGAVLEWMPSGANIAAV 240 (1323)
Q Consensus 168 qf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~-------~~~~v~slawsPdG~lIAs~ 240 (1323)
....+++|+||+|++ ++... .+.+.|+|.++.+...+... ....+.+|--+|.+...+..
T Consensus 79 -------~~~~i~~s~DG~~~~-v~n~~-----~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~ 145 (369)
T PF02239_consen 79 -------NPRGIAVSPDGKYVY-VANYE-----PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVN 145 (369)
T ss_dssp -------EEEEEEE--TTTEEE-EEEEE-----TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEE
T ss_pred -------CcceEEEcCCCCEEE-EEecC-----CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEE
Confidence 237899999999999 66543 47999999889888776431 12345678889998866555
Q ss_pred ecCCCCCCCCeEEEEeCCCe---eEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEE
Q 000736 241 YDRKSENKCPSIVFYERNGL---ERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRY 317 (1323)
Q Consensus 241 s~d~~~~~~~~V~~~e~nGl---~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~ 317 (1323)
-.+ ...|.+.+-... .... +. .........|+|||+++.++.... +.|-++|..+..- ...+..
T Consensus 146 lkd-----~~~I~vVdy~d~~~~~~~~--i~--~g~~~~D~~~dpdgry~~va~~~s--n~i~viD~~~~k~--v~~i~~ 212 (369)
T PF02239_consen 146 LKD-----TGEIWVVDYSDPKNLKVTT--IK--VGRFPHDGGFDPDGRYFLVAANGS--NKIAVIDTKTGKL--VALIDT 212 (369)
T ss_dssp ETT-----TTEEEEEETTTSSCEEEEE--EE----TTEEEEEE-TTSSEEEEEEGGG--TEEEEEETTTTEE--EEEEE-
T ss_pred Ecc-----CCeEEEEEeccccccceee--ec--ccccccccccCcccceeeeccccc--ceeEEEeeccceE--EEEeec
Confidence 554 346766553221 1111 11 123466899999999887765433 3788899877531 112221
Q ss_pred ecC---CcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCE
Q 000736 318 LRR---DGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAV 394 (1323)
Q Consensus 318 ~~~---~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~~~~~V 394 (1323)
... .+..-.=||.. ..+|.+.......+..+....+.+++...|-+ .+++...+.-
T Consensus 213 g~~p~~~~~~~~php~~----------------g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkv-----v~~I~~~G~g 271 (369)
T PF02239_consen 213 GKKPHPGPGANFPHPGF----------------GPVWATSGLGYFAIPLIGTDPVSVHDDYAWKV-----VKTIPTQGGG 271 (369)
T ss_dssp SSSBEETTEEEEEETTT----------------EEEEEEEBSSSSEEEEEE--TTT-STTTBTSE-----EEEEE-SSSS
T ss_pred cccccccccccccCCCc----------------ceEEeeccccceecccccCCccccchhhcCeE-----EEEEECCCCc
Confidence 100 00111122221 23555553344444555555555555555433 2344443433
Q ss_pred EEEEEecCCCCCEEEEE----ECCCcEEEEECCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCC
Q 000736 395 TEMAFYSKSSKNCLAAI----LSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPR 470 (1323)
Q Consensus 395 ~~VaFSpdg~~~~LAs~----s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~ 470 (1323)
.-+.-+|++ ..+.+. ..+++|.++|..+.... ..+.......+.|+.|++||+.+-++..+..
T Consensus 272 lFi~thP~s--~~vwvd~~~~~~~~~v~viD~~tl~~~-----------~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~ 338 (369)
T PF02239_consen 272 LFIKTHPDS--RYVWVDTFLNPDADTVQVIDKKTLKVV-----------KTITPGPGKRVVHMEFNPDGKEVWVSVWDGN 338 (369)
T ss_dssp --EE--TT---SEEEEE-TT-SSHT-EEEEECCGTEEE-----------E-HHHHHT--EEEEEE-TTSSEEEEEEE--T
T ss_pred ceeecCCCC--ccEEeeccCCCCCceEEEEECcCccee-----------EEEeccCCCcEeccEECCCCCEEEEEEecCC
Confidence 567778998 888877 44589999998763211 1110111125899999999998776665543
Q ss_pred CeeEEEE
Q 000736 471 HSNYFRG 477 (1323)
Q Consensus 471 ~~~~~~~ 477 (1323)
..+.++.
T Consensus 339 ~~i~v~D 345 (369)
T PF02239_consen 339 GAIVVYD 345 (369)
T ss_dssp TEEEEEE
T ss_pred CEEEEEE
Confidence 3566654
|
... |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.8e-09 Score=124.81 Aligned_cols=206 Identities=11% Similarity=0.076 Sum_probs=127.5
Q ss_pred ceeEEeeecCCCE-EEEEeC---CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeC-C
Q 000736 22 ILQFSALDIEQNR-LFFASS---ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTS-S 96 (1323)
Q Consensus 22 ~~~~~~~d~~~~~-l~~~s~---~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~-d 96 (1323)
......|.+|++. +|+.+. ...|+.+|+ .+++. -. +.. ..+.+....|||||+.|+.... +
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl--~tg~~-~~-------lt~----~~g~~~~~~~SPDG~~la~~~~~~ 254 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNL--YTGKK-EK-------IAS----SQGMLVVSDVSKDGSKLLLTMAPK 254 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEEC--CCCcE-EE-------Eec----CCCcEEeeEECCCCCEEEEEEccC
Confidence 4567899999985 776544 347999999 55553 11 111 1245667889999998876543 3
Q ss_pred --CcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCC-c--cEEEEeecCceeeeeeecccCCCceeccCcccc
Q 000736 97 --GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGF-G--QILVMTHDWDLLYENPLEELAEGFDVHEPELSS 171 (1323)
Q Consensus 97 --G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d-~--tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~ 171 (1323)
.+|.+++++++....+....+......|||||+.|+..+.. + .|.+++.+.... .. ++ +.+
T Consensus 255 g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~--~r---------lt---~~g 320 (419)
T PRK04043 255 GQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV--EQ---------VV---FHG 320 (419)
T ss_pred CCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe--Ee---------Cc---cCC
Confidence 46888898887766444333334567899999999999853 2 344443221111 01 10 101
Q ss_pred CCCCeEEEEEecCCcEEEEeecccccc--CCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCC
Q 000736 172 SFSFKSPISWRGDGKYFATLSEFCNSS--KLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKC 249 (1323)
Q Consensus 172 ~~~~i~~isWspDG~~lAtvss~d~~~--~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~ 249 (1323)
. ...+|||||+++|.++.....+ .+...|.+.|.++|........ +.....+|||||+.|+....... .
T Consensus 321 ~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~--~~~~~p~~SPDG~~I~f~~~~~~---~ 391 (419)
T PRK04043 321 K----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN--GVNQFPRFSSDGGSIMFIKYLGN---Q 391 (419)
T ss_pred C----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC--CCcCCeEECCCCCEEEEEEccCC---c
Confidence 1 2348999999999554321100 0124688889877776554432 33457899999999998876532 3
Q ss_pred CeEEEEeCCCeeEEE
Q 000736 250 PSIVFYERNGLERSS 264 (1323)
Q Consensus 250 ~~V~~~e~nGl~~~~ 264 (1323)
..+...+.+|.....
T Consensus 392 ~~L~~~~l~g~~~~~ 406 (419)
T PRK04043 392 SALGIIRLNYNKSFL 406 (419)
T ss_pred EEEEEEecCCCeeEE
Confidence 457777888855443
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-08 Score=111.03 Aligned_cols=201 Identities=14% Similarity=0.127 Sum_probs=135.5
Q ss_pred CCCEEEEEEecCC-CEEEEEeCC-------CcEEEEeCCC-------CeEEEeceec----CcEEEEEEcCCCCeEEEEe
Q 000736 75 GDSITAFDYLMEK-EALIVGTSS-------GLLLLHSVDG-------NATEVVGRVE----GGVRFISPSPDGDLLGVTT 135 (1323)
Q Consensus 75 ~~~V~~v~~spdg-~~La~as~d-------G~I~lw~~~~-------~~~e~vg~~~----~~I~~~awSPDG~~LA~~s 135 (1323)
.+.|+.++-+|-. ..|++...+ -.+.||++.. ..+|++.+.+ +.|.|+.|-|++..||+..
T Consensus 63 agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~ 142 (370)
T KOG1007|consen 63 AGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD 142 (370)
T ss_pred CcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec
Confidence 5789999999955 566665542 1367898753 1245554433 5799999999999999988
Q ss_pred CCccEEEEeecCce--eeeeeecccCCCceeccCccccCCCCeEEEEEec--CCcEEEEeeccccccCCCCEEEEEECCC
Q 000736 136 GFGQILVMTHDWDL--LYENPLEELAEGFDVHEPELSSSFSFKSPISWRG--DGKYFATLSEFCNSSKLHKRLKVWERDS 211 (1323)
Q Consensus 136 ~d~tV~l~t~~~d~--~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWsp--DG~~lAtvss~d~~~~~d~~IrVWd~~~ 211 (1323)
|+.|.+|+.+-.+ ..++...... ++.....+=+||| ||..+|+. ++++++.||.++
T Consensus 143 -dn~i~l~~l~ess~~vaev~ss~s~-----------e~~~~ftsg~WspHHdgnqv~tt--------~d~tl~~~D~RT 202 (370)
T KOG1007|consen 143 -DNNIVLWSLDESSKIVAEVLSSESA-----------EMRHSFTSGAWSPHHDGNQVATT--------SDSTLQFWDLRT 202 (370)
T ss_pred -cCceEEEEcccCcchheeecccccc-----------cccceecccccCCCCccceEEEe--------CCCcEEEEEccc
Confidence 6789999754221 1222211111 1223457788998 99999933 368999999866
Q ss_pred Cceeee-eccCCCceeEEEEccCCCe-EEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCC-eeE
Q 000736 212 GTLQAS-SELKAFMGAVLEWMPSGAN-IAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSD-LLA 288 (1323)
Q Consensus 212 G~l~~t-~e~~~~~v~slawsPdG~l-IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~-~LA 288 (1323)
-..... -..|...+.++.|+|+-+. ||++++| ..|+|||..-..---+.++. +..+|+++.|+|--+ ++.
T Consensus 203 ~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDd------gyvriWD~R~tk~pv~el~~-HsHWvW~VRfn~~hdqLiL 275 (370)
T KOG1007|consen 203 MKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDD------GYVRIWDTRKTKFPVQELPG-HSHWVWAVRFNPEHDQLIL 275 (370)
T ss_pred hhhhcchhhhhcceeeeccCCCCceEEEEEcCCC------ccEEEEeccCCCccccccCC-CceEEEEEEecCccceEEE
Confidence 554443 3457778999999999885 5777765 56999994322212223333 367999999999755 455
Q ss_pred EEEccCCCCeEEEEEee
Q 000736 289 AVVRFEEYDSVKICFFS 305 (1323)
Q Consensus 289 ~~~~d~~~~~V~LW~~~ 305 (1323)
++++|. .|-||...
T Consensus 276 s~~SDs---~V~Lsca~ 289 (370)
T KOG1007|consen 276 SGGSDS---AVNLSCAS 289 (370)
T ss_pred ecCCCc---eeEEEecc
Confidence 677777 79999865
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.9e-08 Score=109.73 Aligned_cols=287 Identities=14% Similarity=0.162 Sum_probs=181.5
Q ss_pred CEEEEEEec--C-CCEEEEEeC----CCcEEEEeCC--CCeEEEec--eecCcEEEEEEcCCCC-----eEEEEeCCccE
Q 000736 77 SITAFDYLM--E-KEALIVGTS----SGLLLLHSVD--GNATEVVG--RVEGGVRFISPSPDGD-----LLGVTTGFGQI 140 (1323)
Q Consensus 77 ~V~~v~~sp--d-g~~La~as~----dG~I~lw~~~--~~~~e~vg--~~~~~I~~~awSPDG~-----~LA~~s~d~tV 140 (1323)
.+.++.||. + +..||+||- .+.|.|..++ +++..... .|.-.++.+.|.||.+ +||+.+. .+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSD--FL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccC--eE
Confidence 467777873 2 357888863 3456665544 33332222 3567899999999984 6665443 69
Q ss_pred EEEeecCce---eeeeeecccCCCceeccCccccCCCCeEEEEEec-CCcEEEEeeccccccCCCCEEEEEECCCCce--
Q 000736 141 LVMTHDWDL---LYENPLEELAEGFDVHEPELSSSFSFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTL-- 214 (1323)
Q Consensus 141 ~l~t~~~d~---~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWsp-DG~~lAtvss~d~~~~~d~~IrVWd~~~G~l-- 214 (1323)
++|....+- .-+..+.... .. .+...+++..|.- |-+++. +||.| .+-.|||.++|..
T Consensus 124 RlWri~~ee~~~~~~~~L~~~k------ns---~~~aPlTSFDWne~dp~~ig-tSSiD------TTCTiWdie~~~~~~ 187 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNK------NS---EFCAPLTSFDWNEVDPNLIG-TSSID------TTCTIWDIETGVSGT 187 (364)
T ss_pred EEEeccCcCCceehhhhhccCc------cc---ccCCcccccccccCCcceeE-eeccc------CeEEEEEEeeccccc
Confidence 898544321 0011111111 11 1234678889985 567777 67664 6888999988733
Q ss_pred -eeeeccCCCceeEEEEccCCC-eEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCC-CCcEEEEEEccC-CCeeEEE
Q 000736 215 -QASSELKAFMGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQI-DSTVELLKWNCM-SDLLAAV 290 (1323)
Q Consensus 215 -~~t~e~~~~~v~slawsPdG~-lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~-~~~V~~laWSpD-g~~LA~~ 290 (1323)
...+-.|+..|..|+|.-.|. .+||++.|+ .|++||...+.|.......+. ......|+||+. =.++|+-
T Consensus 188 vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDG------SvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf 261 (364)
T KOG0290|consen 188 VKTQLIAHDKEVYDIAFLKGSRDVFASVGADG------SVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATF 261 (364)
T ss_pred eeeEEEecCcceeEEEeccCccceEEEecCCC------cEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhh
Confidence 223557999999999999775 679999874 699999877888875544443 356889999974 5678877
Q ss_pred EccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEE
Q 000736 291 VRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKIL 370 (1323)
Q Consensus 291 ~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~ 370 (1323)
..|. ..|+|.|+.... .-..+++.|+.....++|.|..+..|.... |+..++
T Consensus 262 ~~dS--~~V~iLDiR~P~-tpva~L~~H~a~VNgIaWaPhS~~hictaG-------------------------DD~qal 313 (364)
T KOG0290|consen 262 AMDS--NKVVILDIRVPC-TPVARLRNHQASVNGIAWAPHSSSHICTAG-------------------------DDCQAL 313 (364)
T ss_pred hcCC--ceEEEEEecCCC-cceehhhcCcccccceEecCCCCceeeecC-------------------------CcceEE
Confidence 6665 368999987532 112345555555588999998876443322 444555
Q ss_pred EeecCCc---CCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEE
Q 000736 371 VTPLSLS---LMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCV 419 (1323)
Q Consensus 371 lt~l~~~---~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~l 419 (1323)
+|++... ++..|+..++ ..+-|+.+.|+|... .-+|++.. +++.+
T Consensus 314 iWDl~q~~~~~~~dPilay~--a~~EVNqi~Ws~~~~-Dwiai~~~-kklei 361 (364)
T KOG0290|consen 314 IWDLQQMPRENGEDPILAYT--AGGEVNQIQWSSSQP-DWIAICFG-KKLEI 361 (364)
T ss_pred EEecccccccCCCCchhhhh--ccceeeeeeecccCC-CEEEEEec-CeeeE
Confidence 5555432 2334665555 456799999997652 67887744 34443
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-07 Score=104.01 Aligned_cols=236 Identities=11% Similarity=0.079 Sum_probs=147.7
Q ss_pred eeEEeeecCCCEEEEEeCCC-cEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCC----
Q 000736 23 LQFSALDIEQNRLFFASSAN-NIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSG---- 97 (1323)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~~~-~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG---- 97 (1323)
....+|+-|..-..++.+++ .||-.|+ +.... .-. .. ..|-.++-+ +--.+.||..+..+
T Consensus 8 ~lsvs~NQD~ScFava~~~Gfriyn~~P--~ke~~--~r~-----~~----~~G~~~veM--LfR~N~laLVGGg~~pky 72 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTGFRIYNCDP--FKESA--SRQ-----FI----DGGFKIVEM--LFRSNYLALVGGGSRPKY 72 (346)
T ss_pred eeEEEEccCCceEEEEecCceEEEecCc--hhhhh--hhc-----cc----cCchhhhhH--hhhhceEEEecCCCCCCC
Confidence 34477888877777777777 3444444 22211 000 00 001122222 33346677655333
Q ss_pred ---cEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCce--eeeeeecccCCCceeccCccccC
Q 000736 98 ---LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDL--LYENPLEELAEGFDVHEPELSSS 172 (1323)
Q Consensus 98 ---~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~--~~e~~l~~~~~~~~Vs~tqf~~~ 172 (1323)
.|.|||-.-.++-+.-.....|.++.+++| .|+++.. ++|.+|+-.-++ +..+.....
T Consensus 73 ~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~--riVvvl~-~~I~VytF~~n~k~l~~~et~~N-------------- 135 (346)
T KOG2111|consen 73 PPNKVIIWDDLKERCIIELSFNSEIKAVKLRRD--RIVVVLE-NKIYVYTFPDNPKLLHVIETRSN-------------- 135 (346)
T ss_pred CCceEEEEecccCcEEEEEEeccceeeEEEcCC--eEEEEec-CeEEEEEcCCChhheeeeecccC--------------
Confidence 599999432222111235788999999988 5666655 478888633232 222221111
Q ss_pred CCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCce--eeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCC
Q 000736 173 FSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL--QASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCP 250 (1323)
Q Consensus 173 ~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l--~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~ 250 (1323)
..+.++++=.-.-.+|| .-+. .-|.|+|-|...-+. -..-..|++.+.+++.+-+|.+||++|..+|
T Consensus 136 PkGlC~~~~~~~k~~La-fPg~-----k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGT----- 204 (346)
T KOG2111|consen 136 PKGLCSLCPTSNKSLLA-FPGF-----KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGT----- 204 (346)
T ss_pred CCceEeecCCCCceEEE-cCCC-----ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcE-----
Confidence 12345555444556777 4432 347899988733222 2445679999999999999999999998654
Q ss_pred eEEEEe-CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee
Q 000736 251 SIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1323)
Q Consensus 251 ~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~ 305 (1323)
-|++|+ .+|.+..||. ++.....|++|+||||++.||+++..+ ||.++.+.
T Consensus 205 LIRIFdt~~g~~l~E~R-RG~d~A~iy~iaFSp~~s~LavsSdKg---TlHiF~l~ 256 (346)
T KOG2111|consen 205 LIRIFDTEDGTLLQELR-RGVDRADIYCIAFSPNSSWLAVSSDKG---TLHIFSLR 256 (346)
T ss_pred EEEEEEcCCCcEeeeee-cCCchheEEEEEeCCCccEEEEEcCCC---eEEEEEee
Confidence 689999 5777777653 233456799999999999999999888 99998875
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.5e-08 Score=114.80 Aligned_cols=324 Identities=14% Similarity=0.124 Sum_probs=168.5
Q ss_pred CEEEEE-eCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEE-
Q 000736 33 NRLFFA-SSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE- 110 (1323)
Q Consensus 33 ~~l~~~-s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e- 110 (1323)
+.+|++ .+++.+-.+|. .+++. +.+++.+ ++....+.|+|||+.+.+++.||.|.++|+.++++-
T Consensus 6 ~l~~V~~~~~~~v~viD~--~t~~~---~~~i~~~--------~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~ 72 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDG--ATNKV---VARIPTG--------GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVA 72 (369)
T ss_dssp GEEEEEEGGGTEEEEEET--TT-SE---EEEEE-S--------TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEE
T ss_pred cEEEEEecCCCEEEEEEC--CCCeE---EEEEcCC--------CCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEE
Confidence 445555 34667888887 56554 2322222 122356789999999999999999999999987643
Q ss_pred EeceecCcEEEEEEcCCCCeEEEEe-CCccEEEEe-ecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEE
Q 000736 111 VVGRVEGGVRFISPSPDGDLLGVTT-GFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYF 188 (1323)
Q Consensus 111 ~vg~~~~~I~~~awSPDG~~LA~~s-~d~tV~l~t-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~l 188 (1323)
.+. ....-.++++||||++++++. .+++|.+++ .+.+++..++....... .....+..|.-+|++..|
T Consensus 73 ~i~-~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~---------~~~~Rv~aIv~s~~~~~f 142 (369)
T PF02239_consen 73 TIK-VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVD---------GPESRVAAIVASPGRPEF 142 (369)
T ss_dssp EEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TT---------TS---EEEEEE-SSSSEE
T ss_pred EEe-cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccccccccc---------ccCCCceeEEecCCCCEE
Confidence 222 234578899999999999886 578999987 66777776654432200 012356788889999877
Q ss_pred EEeeccccccCCCCEEEEEECCCCcee-eeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEE
Q 000736 189 ATLSEFCNSSKLHKRLKVWERDSGTLQ-ASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFD 266 (1323)
Q Consensus 189 Atvss~d~~~~~d~~IrVWd~~~G~l~-~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~ 266 (1323)
+ ++--+ .+.|-+-|..+.... .+.......-....|.|+|+++..+... .+.|.+++.. +.......
T Consensus 143 V-v~lkd-----~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~-----sn~i~viD~~~~k~v~~i~ 211 (369)
T PF02239_consen 143 V-VNLKD-----TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANG-----SNKIAVIDTKTGKLVALID 211 (369)
T ss_dssp E-EEETT-----TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGG-----GTEEEEEETTTTEEEEEEE
T ss_pred E-EEEcc-----CCeEEEEEeccccccceeeecccccccccccCcccceeeecccc-----cceeEEEeeccceEEEEee
Confidence 6 54322 356666676444322 2233334445789999999987665443 2467777643 22221111
Q ss_pred e-ccCCCCcEE-------EEEEc--cCCCee-EEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEE
Q 000736 267 I-NEQIDSTVE-------LLKWN--CMSDLL-AAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQL 335 (1323)
Q Consensus 267 l-~~~~~~~V~-------~laWS--pDg~~L-A~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L 335 (1323)
. +.++...+. ..-|. -.+... ...+.+ .+.+|+..+ |-..+++... ..+..+.-||++++ +
T Consensus 212 ~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~----~v~v~d~~~--wkvv~~I~~~-G~glFi~thP~s~~-v 283 (369)
T PF02239_consen 212 TGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTD----PVSVHDDYA--WKVVKTIPTQ-GGGLFIKTHPDSRY-V 283 (369)
T ss_dssp -SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE------TTT-STTTB--TSEEEEEE-S-SSS--EE--TT-SE-E
T ss_pred ccccccccccccccCCCcceEEeeccccceecccccCC----ccccchhhc--CeEEEEEECC-CCcceeecCCCCcc-E
Confidence 1 011111111 22243 333333 233333 355666655 5455666653 23378888998874 2
Q ss_pred EEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeec--CCCCEEEEEEecCCCCCEEEEEEC
Q 000736 336 ICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLK--FPTAVTEMAFYSKSSKNCLAAILS 413 (1323)
Q Consensus 336 ~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~--~~~~V~~VaFSpdg~~~~LAs~s~ 413 (1323)
.+-.. ...+...+.|+|-.++.+. .++. ....+..+.|++||. ....|...
T Consensus 284 wvd~~-------------~~~~~~~v~viD~~tl~~~-------------~~i~~~~~~~~~h~ef~~dG~-~v~vS~~~ 336 (369)
T PF02239_consen 284 WVDTF-------------LNPDADTVQVIDKKTLKVV-------------KTITPGPGKRVVHMEFNPDGK-EVWVSVWD 336 (369)
T ss_dssp EEE-T-------------T-SSHT-EEEEECCGTEEE-------------E-HHHHHT--EEEEEE-TTSS-EEEEEEE-
T ss_pred Eeecc-------------CCCCCceEEEEECcCccee-------------EEEeccCCCcEeccEECCCCC-EEEEEEec
Confidence 22210 0122457788887765432 1121 122488999999992 33444444
Q ss_pred CC-cEEEEECCCC
Q 000736 414 DG-CLCVVDLPAP 425 (1323)
Q Consensus 414 Dg-ti~lw~~~~~ 425 (1323)
++ .|.+||..+.
T Consensus 337 ~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 337 GNGAIVVYDAKTL 349 (369)
T ss_dssp -TTEEEEEETTTT
T ss_pred CCCEEEEEECCCc
Confidence 44 8999998764
|
... |
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.3e-08 Score=116.92 Aligned_cols=277 Identities=12% Similarity=0.090 Sum_probs=177.2
Q ss_pred ceeEEeeecCCC--EEEEEeCCCcEEEEecccccccccc-eeeccccccccccCCC-CCCEEEEEEecCC-CEEEEEeCC
Q 000736 22 ILQFSALDIEQN--RLFFASSANNIYSAQLSSFQNERAS-IKTAISAEIEHIDLEP-GDSITAFDYLMEK-EALIVGTSS 96 (1323)
Q Consensus 22 ~~~~~~~d~~~~--~l~~~s~~~~i~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~-~~~V~~v~~spdg-~~La~as~d 96 (1323)
.+.+++|=|--+ .|.+++.-++|=.||+ .+++-.. .+ .. |-| ++.|.+|.|+|.. ..+.+.|.|
T Consensus 188 Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~--~~~~~d~d~v------~~---f~~hs~~Vs~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 188 RITSLAFHPTENRKLVAVGDKGGQVGLWNF--GTQEKDKDGV------YL---FTPHSGPVSGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred ceEEEEecccCcceEEEEccCCCcEEEEec--CCCCCccCce------EE---eccCCccccceEecCCChhheeeeccC
Confidence 788888887655 5555566789999999 3332110 01 11 222 5789999999965 577788999
Q ss_pred CcEEEEeCCCCeEEEece---ecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCC
Q 000736 97 GLLLLHSVDGNATEVVGR---VEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSF 173 (1323)
Q Consensus 97 G~I~lw~~~~~~~e~vg~---~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~ 173 (1323)
|+|++-|.++...+.+-. ...++..+.||.+...+.+++.-|.+.+|+..-+-..-..+ .-|+
T Consensus 257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~--------------~lh~ 322 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENL--------------RLHK 322 (498)
T ss_pred ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhh--------------hhhh
Confidence 999999999876653332 23457788999998888888887766666422111000001 1234
Q ss_pred CCeEEEEEecCCc-EEEEeeccccccCCCCEEEEEECCC--Cc---eeeeeccCCCceeEEEEccCCCeEEEEecCCCCC
Q 000736 174 SFKSPISWRGDGK-YFATLSEFCNSSKLHKRLKVWERDS--GT---LQASSELKAFMGAVLEWMPSGANIAAVYDRKSEN 247 (1323)
Q Consensus 174 ~~i~~isWspDG~-~lAtvss~d~~~~~d~~IrVWd~~~--G~---l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~ 247 (1323)
..|.+++++|-.. +|| +++. |++.||||.+. ++ ++++. +|...|.+..|||+|-.|++.+.|
T Consensus 323 kKI~sv~~NP~~p~~la-T~s~------D~T~kIWD~R~l~~K~sp~lst~-~HrrsV~sAyFSPs~gtl~TT~~D---- 390 (498)
T KOG4328|consen 323 KKITSVALNPVCPWFLA-TASL------DQTAKIWDLRQLRGKASPFLSTL-PHRRSVNSAYFSPSGGTLLTTCQD---- 390 (498)
T ss_pred cccceeecCCCCchhee-eccc------CcceeeeehhhhcCCCCcceecc-cccceeeeeEEcCCCCceEeeccC----
Confidence 5779999999875 566 5544 58999999753 22 23333 478889999999999888888875
Q ss_pred CCCeEEEEeCCCe-----eEEEEEeccCC-C---CcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEe
Q 000736 248 KCPSIVFYERNGL-----ERSSFDINEQI-D---STVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYL 318 (1323)
Q Consensus 248 ~~~~V~~~e~nGl-----~~~~f~l~~~~-~---~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~ 318 (1323)
..|++|+..-. ..+ +++-.. . -.....+|.||-.+++++-... -|-+++-++.+- -.++..+
T Consensus 391 --~~IRv~dss~~sa~~~p~~--~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r---~IDv~~~~~~q~--v~el~~P 461 (498)
T KOG4328|consen 391 --NEIRVFDSSCISAKDEPLG--TIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPR---PIDVFDGNGGQM--VCELHDP 461 (498)
T ss_pred --CceEEeecccccccCCccc--eeeccCcccccccchhheeCCCccEEEEeccCc---ceeEEcCCCCEE--eeeccCc
Confidence 46999986210 011 111000 1 1245678999999999998877 699999877431 1122111
Q ss_pred cC-Cc-EEEEEccCCCcEEEEEecCCcE
Q 000736 319 RR-DG-IRFMWHPTKPLQLICWTLDGQI 344 (1323)
Q Consensus 319 ~~-~~-~~v~Wsp~~~~~L~~~~~~g~~ 344 (1323)
.. .. ....|||-+...+.-++..|.+
T Consensus 462 ~~~tI~~vn~~HP~~~~~~aG~~s~Gki 489 (498)
T KOG4328|consen 462 ESSTIPSVNEFHPMRDTLAAGGNSSGKI 489 (498)
T ss_pred cccccccceeecccccceeccCCccceE
Confidence 11 12 4578999876433333334443
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.3e-09 Score=124.64 Aligned_cols=122 Identities=16% Similarity=0.171 Sum_probs=89.5
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEeccccccc---ccceeecccccc--------cc-ccCCC----CCCEEEEEEe
Q 000736 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNE---RASIKTAISAEI--------EH-IDLEP----GDSITAFDYL 84 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~---~~~~~~~l~~~~--------~~-~~~~~----~~~V~~v~~s 84 (1323)
.++++.|-+-++.+|.++- ++.+|.+|.. .... -.+.....++.+ .. .|..+ .+.|..++||
T Consensus 221 svT~ikWvpg~~~~Fl~a~~sGnlyly~~~-~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS 299 (636)
T KOG2394|consen 221 SVTCIKWVPGSDSLFLVAHASGNLYLYDKE-IVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS 299 (636)
T ss_pred ceEEEEEEeCCCceEEEEEecCceEEeecc-ccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence 7899999999999988866 6778888763 1111 001111111111 00 12222 4689999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe
Q 000736 85 MEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT 144 (1323)
Q Consensus 85 pdg~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t 144 (1323)
|||+.||+.|.||.++|+|.++.++. +..+.=+|..|++|||||++||+|++|.-|.+|+
T Consensus 300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwS 360 (636)
T KOG2394|consen 300 PDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWS 360 (636)
T ss_pred CCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEE
Confidence 99999999999999999999986554 2233447899999999999999999999999997
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=9.9e-09 Score=114.22 Aligned_cols=291 Identities=11% Similarity=0.025 Sum_probs=167.9
Q ss_pred CEEEEEeCCCcEEEEeCCCCe-EEEeceecCcEEEEEEcC--CCCeEEEEeCCccEEEEe-ecCceeeeeeecccCCCce
Q 000736 88 EALIVGTSSGLLLLHSVDGNA-TEVVGRVEGGVRFISPSP--DGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFD 163 (1323)
Q Consensus 88 ~~La~as~dG~I~lw~~~~~~-~e~vg~~~~~I~~~awSP--DG~~LA~~s~d~tV~l~t-~~~d~~~e~~l~~~~~~~~ 163 (1323)
..+|++.++|.|++||..++. ++.+..++..++.++|.- .+..+.+++.||+|++|+ |...-...+......
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~---- 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS---- 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC----
Confidence 568889999999999998854 454444578888888876 467899999999999986 443333323222111
Q ss_pred eccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCce-ee-eeccCCCceeEEEEccCC-CeEEEE
Q 000736 164 VHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL-QA-SSELKAFMGAVLEWMPSG-ANIAAV 240 (1323)
Q Consensus 164 Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l-~~-t~e~~~~~v~slawsPdG-~lIAs~ 240 (1323)
.....++.-.-.++.++ +++.-. ..+-.|.+||.+.-+. +. -.+.|..-|+.|.|.|+. ++|+||
T Consensus 117 ---------~~~f~~ld~nck~~ii~-~GtE~~--~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSG 184 (376)
T KOG1188|consen 117 ---------GTPFICLDLNCKKNIIA-CGTELT--RSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSG 184 (376)
T ss_pred ---------CCcceEeeccCcCCeEE-eccccc--cCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEee
Confidence 01223444343677888 775321 3467899999754332 33 367888999999999975 789999
Q ss_pred ecCCCCCCCCeEEEEeCCCeeEEEEEec-cCCCCcEEEEEEccCC--CeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEE
Q 000736 241 YDRKSENKCPSIVFYERNGLERSSFDIN-EQIDSTVELLKWNCMS--DLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRY 317 (1323)
Q Consensus 241 s~d~~~~~~~~V~~~e~nGl~~~~f~l~-~~~~~~V~~laWSpDg--~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~ 317 (1323)
|.| +-|-+||.++....+--+. ......|..+.|..++ ++ -+-+... +..+|+++...- +..+
T Consensus 185 SvD------GLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI-~clTH~E---tf~~~ele~~~~----~~~~ 250 (376)
T KOG1188|consen 185 SVD------GLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRI-MCLTHME---TFAIYELEDGSE----ETWL 250 (376)
T ss_pred ccc------ceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceE-EEEEccC---ceeEEEccCCCh----hhcc
Confidence 987 4688999765421111011 0123469999999998 53 3444444 688888765321 1111
Q ss_pred ecCCc-EEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeC--CEEEEeecCC---cCCCCCceeeeecCC
Q 000736 318 LRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDG--SKILVTPLSL---SLMPPPMYLFSLKFP 391 (1323)
Q Consensus 318 ~~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg--~~l~lt~l~~---~~vPppm~~~~l~~~ 391 (1323)
...+. ....|-.+.. -+ ++-...+.+..+.+++.+ ++..+.|+.. ...-.|....+-.|.
T Consensus 251 ~~~~~~~~d~r~~~~~--dY------------~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~ 316 (376)
T KOG1188|consen 251 ENPDVSADDLRKEDNC--DY------------VINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHE 316 (376)
T ss_pred cCccchhhhHHhhhhh--hh------------eeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcH
Confidence 11000 0111111100 00 000111233333333322 2333333331 111111111111245
Q ss_pred CCEEEEEEecCCCCCEEEEEECCCcEEEEECCC
Q 000736 392 TAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1323)
Q Consensus 392 ~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~ 424 (1323)
.-|.++.|-..+ ..+-+++.||.+.+|..++
T Consensus 317 eiVR~i~~~~~~--~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 317 EIVRDILFDVKN--DVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred HHHHHHhhhccc--ceeeccCCCceEEEEecCC
Confidence 567888887777 8999999999999999643
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.8e-09 Score=117.69 Aligned_cols=179 Identities=16% Similarity=0.150 Sum_probs=118.5
Q ss_pred EEEEEcCCCCeEEEEeCCccEEEEe-ecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeecccccc
Q 000736 120 RFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSS 198 (1323)
Q Consensus 120 ~~~awSPDG~~LA~~s~d~tV~l~t-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~ 198 (1323)
.++||++||..||+++.||++++|+ .+-.++.+. ..|...|-++.|||||++||+++.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e----------------~~~~~eV~DL~FS~dgk~lasig~----- 206 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE----------------IAHHAEVKDLDFSPDGKFLASIGA----- 206 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhh----------------HhhcCccccceeCCCCcEEEEecC-----
Confidence 7899999999999999999999985 221222111 134456789999999999997653
Q ss_pred CCCCEEEEEECCCCceeeeecc--CCCceeEEEEccCC---C-eEEEEecCCCCCCCCeEEEEeCCC-eeEEEEEeccCC
Q 000736 199 KLHKRLKVWERDSGTLQASSEL--KAFMGAVLEWMPSG---A-NIAAVYDRKSENKCPSIVFYERNG-LERSSFDINEQI 271 (1323)
Q Consensus 199 ~~d~~IrVWd~~~G~l~~t~e~--~~~~v~slawsPdG---~-lIAs~s~d~~~~~~~~V~~~e~nG-l~~~~f~l~~~~ 271 (1323)
+ ..+||+.++|..++...+ .+.....+.|+-|+ . +||+...+...-...++.+|.++. ++..++ ...
T Consensus 207 --d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~---~~~ 280 (398)
T KOG0771|consen 207 --D-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKK---IKR 280 (398)
T ss_pred --C-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhh---hhc
Confidence 3 789999999977776554 34455788999888 3 344443321111112233454431 111110 111
Q ss_pred CCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEec----CCcEEEEEccCCCc
Q 000736 272 DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLR----RDGIRFMWHPTKPL 333 (1323)
Q Consensus 272 ~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~----~~~~~v~Wsp~~~~ 333 (1323)
...|.+++-|+||+++|.|+.|+ .|-+++....+. +.+.+ ...+.+.|+||...
T Consensus 281 ~~siSsl~VS~dGkf~AlGT~dG---sVai~~~~~lq~-----~~~vk~aH~~~VT~ltF~Pdsr~ 338 (398)
T KOG0771|consen 281 FKSISSLAVSDDGKFLALGTMDG---SVAIYDAKSLQR-----LQYVKEAHLGFVTGLTFSPDSRY 338 (398)
T ss_pred cCcceeEEEcCCCcEEEEeccCC---cEEEEEeceeee-----eEeehhhheeeeeeEEEcCCcCc
Confidence 24699999999999999999998 899999876432 22222 12378999998865
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.7e-09 Score=115.79 Aligned_cols=152 Identities=19% Similarity=0.277 Sum_probs=108.0
Q ss_pred EeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCC-C-CCCEEEEEEecCCCEEEE--EeCCCcEEE
Q 000736 26 SALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLE-P-GDSITAFDYLMEKEALIV--GTSSGLLLL 101 (1323)
Q Consensus 26 ~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~-~~~V~~v~~spdg~~La~--as~dG~I~l 101 (1323)
+++.-..++|.++-++. ||.+|++ .++- +++ +... | ...+.++++++++..||- ....|+|.|
T Consensus 91 L~VrmNr~RLvV~Lee~-IyIydI~-~Mkl----LhT-------I~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l 157 (391)
T KOG2110|consen 91 LAVRMNRKRLVVCLEES-IYIYDIK-DMKL----LHT-------IETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL 157 (391)
T ss_pred EEEEEccceEEEEEccc-EEEEecc-ccee----ehh-------hhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence 45556678899998887 9999994 3322 222 2222 2 345788888888888884 346899999
Q ss_pred EeCCCCe-EEEeceecCcEEEEEEcCCCCeEEEEeCCccEE-EEe-ecCceeeeeeecccCCCceeccCccccCCCCeEE
Q 000736 102 HSVDGNA-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQIL-VMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1323)
Q Consensus 102 w~~~~~~-~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~-l~t-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~ 178 (1323)
||..+-+ ...+..|++.|-|++|||||.+||+||+.|||+ +++ .+++.+.|..-.. .. ..|.+
T Consensus 158 ~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~----~~----------~~IyS 223 (391)
T KOG2110|consen 158 FDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT----YP----------VSIYS 223 (391)
T ss_pred EEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc----ee----------eEEEE
Confidence 9998743 445567899999999999999999999999974 332 3344444433221 12 36899
Q ss_pred EEEecCCcEEEEeeccccccCCCCEEEEEECCC
Q 000736 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS 211 (1323)
Q Consensus 179 isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~ 211 (1323)
++|+||++||+ +++ ...+|.||-.++
T Consensus 224 L~Fs~ds~~L~-~sS------~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 224 LSFSPDSQFLA-ASS------NTETVHIFKLEK 249 (391)
T ss_pred EEECCCCCeEE-Eec------CCCeEEEEEecc
Confidence 99999999999 553 247999998743
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.6e-09 Score=122.56 Aligned_cols=207 Identities=15% Similarity=0.091 Sum_probs=137.0
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC------Ce---EEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEee
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDG------NA---TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH 145 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~------~~---~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~ 145 (1323)
-+.|.+++|.|-...|++++.||+|++|+++. .. +-.+-.|.+.|.|++.++.|+.+-+||-||+|..|+.
T Consensus 294 ~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~ 373 (577)
T KOG0642|consen 294 DDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNL 373 (577)
T ss_pred hhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeecc
Confidence 36899999999999999999999999999931 22 2245567999999999999999999999999988742
Q ss_pred cCceeeeeeecccC-CCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecc-CCC
Q 000736 146 DWDLLYENPLEELA-EGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL-KAF 223 (1323)
Q Consensus 146 ~~d~~~e~~l~~~~-~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~-~~~ 223 (1323)
- ....+++ ..-.+-.+.+.||.+.++.+++|+--+.|++++ .|+++|.|+..++.. .++.. ..+
T Consensus 374 p------~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs-------~DgTvr~w~~~~~~~-~~f~~~~e~ 439 (577)
T KOG0642|consen 374 P------PNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCS-------SDGTVRLWEPTEESP-CTFGEPKEH 439 (577)
T ss_pred C------CCCCcccccCcchhccceeccccceeeeeecccccceeeec-------CCceEEeeccCCcCc-cccCCcccc
Confidence 1 1111111 111122456779999999999999998888444 258999999844333 22211 100
Q ss_pred ---------------------------------------------------ceeEEEEccCCCeEEEEecCCCCCCCCeE
Q 000736 224 ---------------------------------------------------MGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1323)
Q Consensus 224 ---------------------------------------------------~v~slawsPdG~lIAs~s~d~~~~~~~~V 252 (1323)
.+.-+-|.|.+-+..++.. ...|
T Consensus 440 g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he------d~~I 513 (577)
T KOG0642|consen 440 GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE------DRSI 513 (577)
T ss_pred CCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc------CCce
Confidence 0122333333333222222 2335
Q ss_pred EEEe-CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCC
Q 000736 253 VFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1323)
Q Consensus 253 ~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~ 307 (1323)
+||| ++|....+- ..+-..|.++++-|+|-+|++++.|+ .|.||.....
T Consensus 514 r~~dn~~~~~l~s~---~a~~~svtslai~~ng~~l~s~s~d~---sv~l~kld~k 563 (577)
T KOG0642|consen 514 RFFDNKTGKILHSM---VAHKDSVTSLAIDPNGPYLMSGSHDG---SVRLWKLDVK 563 (577)
T ss_pred ecccccccccchhe---eeccceecceeecCCCceEEeecCCc---eeehhhccch
Confidence 5554 222211110 01234689999999999999999999 8999998653
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.1e-07 Score=109.72 Aligned_cols=245 Identities=13% Similarity=0.126 Sum_probs=154.1
Q ss_pred CEEEEEEecCCCEEEE-----EeCCC-----cEEEEeCCCCeE--EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe
Q 000736 77 SITAFDYLMEKEALIV-----GTSSG-----LLLLHSVDGNAT--EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT 144 (1323)
Q Consensus 77 ~V~~v~~spdg~~La~-----as~dG-----~I~lw~~~~~~~--e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t 144 (1323)
.+.++.|||-|..|++ ...++ .+++|+..++.. .+.-..+.+ |+..||+|..+.|-..+. .|.+++
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~arlv~n-ev~f~~ 152 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAARLVSN-EVQFYD 152 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-cccccccchhhhhhhhcc-eEEEEe
Confidence 7899999999998875 23333 366999988332 244444555 899999997766555443 466654
Q ss_pred e-cCcee---------eeeeecccCCCceec--------------------cCcccc------CCCCeEEEEEecCCcEE
Q 000736 145 H-DWDLL---------YENPLEELAEGFDVH--------------------EPELSS------SFSFKSPISWRGDGKYF 188 (1323)
Q Consensus 145 ~-~~d~~---------~e~~l~~~~~~~~Vs--------------------~tqf~~------~~~~i~~isWspDG~~l 188 (1323)
. +++.+ +...+.+..+.-+|- +.+.+. .....+.+.|.+-|.-|
T Consensus 153 ~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~L 232 (566)
T KOG2315|consen 153 LGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTAL 232 (566)
T ss_pred cCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceE
Confidence 2 22221 112222221000110 111110 11234788999888732
Q ss_pred E--Eeecccccc---CCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEe-cCCCCCCCCeEEEEeCCCeeE
Q 000736 189 A--TLSEFCNSS---KLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVY-DRKSENKCPSIVFYERNGLER 262 (1323)
Q Consensus 189 A--tvss~d~~~---~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s-~d~~~~~~~~V~~~e~nGl~~ 262 (1323)
. +++.+|..+ -+..++.+.+. +|......-...|+|+++.|+|+|+-.|++- .-+ -.|.||+.+|...
T Consensus 233 LvLastdVDktn~SYYGEq~Lyll~t-~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMP-----Akvtifnlr~~~v 306 (566)
T KOG2315|consen 233 LVLASTDVDKTNASYYGEQTLYLLAT-QGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMP-----AKVTIFNLRGKPV 306 (566)
T ss_pred EEEEEEeecCCCccccccceEEEEEe-cCceEEEecCCCCCceEEEECCCCCEEEEEEeccc-----ceEEEEcCCCCEe
Confidence 2 133344310 14468899998 6877777666789999999999999877664 333 4799999988765
Q ss_pred EEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEe
Q 000736 263 SSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWT 339 (1323)
Q Consensus 263 ~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~ 339 (1323)
.+| + ++.=+.+-|||-|.+|+.++-+.-.+.|.+||+.|++ +...+...+.+.+.|+|||.. +.+.+
T Consensus 307 ~df--~---egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K----~i~~~~a~~tt~~eW~PdGe~-flTAT 373 (566)
T KOG2315|consen 307 FDF--P---EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK----LIAKFKAANTTVFEWSPDGEY-FLTAT 373 (566)
T ss_pred EeC--C---CCCccceEECCCCCEEEEeecCCCCCceEEEeccchh----hccccccCCceEEEEcCCCcE-EEEEe
Confidence 443 2 3455689999999999999877644469999999964 333333334478899999876 44433
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.5e-08 Score=119.13 Aligned_cols=210 Identities=12% Similarity=0.111 Sum_probs=148.7
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEec---ccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCc
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQL---SSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGL 98 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~ 98 (1323)
-+.++++-+-.-.|+.|++++.|..|++ ........-.+-+ +++| .+.|.++.+++.++.+.+|+.||+
T Consensus 296 ~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~t----fraH----~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 296 CIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILT----FRAH----EGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred hhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEE----Eecc----cCceEEEEecCCceEEEeeccCce
Confidence 4555667777888999999999999999 2111111011211 4444 578999999999999999999999
Q ss_pred EEEEeCCC-------C---eE-E-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeee--ecccC-CCce
Q 000736 99 LLLHSVDG-------N---AT-E-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP--LEELA-EGFD 163 (1323)
Q Consensus 99 I~lw~~~~-------~---~~-e-~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~--l~~~~-~~~~ 163 (1323)
|+.|++.. . .+ . ..| |.+.||.+++|+.-..|++++.||||++|.- ..+.+ +.... ++.+
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~G-htdavw~l~~s~~~~~Llscs~DgTvr~w~~----~~~~~~~f~~~~e~g~P 442 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLG-HTDAVWLLALSSTKDRLLSCSSDGTVRLWEP----TEESPCTFGEPKEHGYP 442 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceec-cccceeeeeecccccceeeecCCceEEeecc----CCcCccccCCccccCCc
Confidence 99996531 1 11 2 345 5889999999999999999999999988742 11111 11000 1111
Q ss_pred ec---------------------------cCccc----------cCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEE
Q 000736 164 VH---------------------------EPELS----------SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKV 206 (1323)
Q Consensus 164 Vs---------------------------~tqf~----------~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrV 206 (1323)
.+ ..+++ ...+.+..|.|.|.+.+.. .+ ..++.||+
T Consensus 443 lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~-~~------hed~~Ir~ 515 (577)
T KOG0642|consen 443 LSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITF-TA------HEDRSIRF 515 (577)
T ss_pred ceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeE-ec------ccCCceec
Confidence 11 01111 1235678899999997665 33 45799999
Q ss_pred EECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeC
Q 000736 207 WERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER 257 (1323)
Q Consensus 207 Wd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~ 257 (1323)
+|-.+|.++.....|.-.+.++++-|+|-.+++++.| ..|.||..
T Consensus 516 ~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d------~sv~l~kl 560 (577)
T KOG0642|consen 516 FDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHD------GSVRLWKL 560 (577)
T ss_pred ccccccccchheeeccceecceeecCCCceEEeecCC------ceeehhhc
Confidence 9988999988877777788999999999999999986 46888864
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.7e-08 Score=107.45 Aligned_cols=284 Identities=10% Similarity=0.060 Sum_probs=172.3
Q ss_pred EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEE
Q 000736 111 VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFAT 190 (1323)
Q Consensus 111 ~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAt 190 (1323)
+.| |.+.|+++.||.+|++||+|+.|..+++|..+ +.+.... .++|. ..-+.|...|.+++|.-...++-
T Consensus 52 ~~~-H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~d-e~~~~k~------~KPI~-~~~~~H~SNIF~L~F~~~N~~~~- 121 (609)
T KOG4227|consen 52 VRE-HTGCINALQFSHNDRFLASGGDDMHGRVWNVD-ELMVRKT------PKPIG-VMEHPHRSNIFSLEFDLENRFLY- 121 (609)
T ss_pred hhh-hccccceeeeccCCeEEeecCCcceeeeechH-HHHhhcC------CCCce-eccCccccceEEEEEccCCeeEe-
Confidence 344 57899999999999999999999999998643 1111110 11110 01114557889999998776665
Q ss_pred eeccccccCCCCEEEEEECCCCceeeeecc--CCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEe
Q 000736 191 LSEFCNSSKLHKRLKVWERDSGTLQASSEL--KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDI 267 (1323)
Q Consensus 191 vss~d~~~~~d~~IrVWd~~~G~l~~t~e~--~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l 267 (1323)
++ +.+++|-.-|.++.+.+..... ..|.|..++-+|--+.+|+.+++ ..|.||+. ....+++..+
T Consensus 122 SG------~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~------~~V~~~D~Rd~~~~~~~~~ 189 (609)
T KOG4227|consen 122 SG------ERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRA------KLVSFIDNRDRQNPISLVL 189 (609)
T ss_pred cC------CCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecC------ceEEEEeccCCCCCCceee
Confidence 54 3457888889988888877653 34678999999999999999986 46889983 3222555444
Q ss_pred ccCCCCcEEEEEEccCCC-eeEEEEccCCCCeEEEEEeeCCeeEEEe--EEEEecC-C--cEEEEEccCCCcEEEEEecC
Q 000736 268 NEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNHWYLKY--EIRYLRR-D--GIRFMWHPTKPLQLICWTLD 341 (1323)
Q Consensus 268 ~~~~~~~V~~laWSpDg~-~LA~~~~d~~~~~V~LW~~~n~~wylkq--~l~~~~~-~--~~~v~Wsp~~~~~L~~~~~~ 341 (1323)
+......-.++-|+|--- +||+++..+ -+-+||..-..--+-+ -...-+. . -..+.|+|.|.+.+.+-.
T Consensus 190 ~AN~~~~F~t~~F~P~~P~Li~~~~~~~---G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR-- 264 (609)
T KOG4227|consen 190 PANSGKNFYTAEFHPETPALILVNSETG---GPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR-- 264 (609)
T ss_pred ecCCCccceeeeecCCCceeEEeccccC---CCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc--
Confidence 422223467889999764 667777665 5889997532110000 0000111 1 156889998864222111
Q ss_pred CcE-EEEEE------EEeee-----------------eCCCeeEEEEeCCEEEEeecCCcC--------------CCCCc
Q 000736 342 GQI-TTYNF------IWTTA-----------------VMENSTALVIDGSKILVTPLSLSL--------------MPPPM 383 (1323)
Q Consensus 342 g~~-~~~~~------~~~~~-----------------~~d~~~v~viDg~~l~lt~l~~~~--------------vPppm 383 (1323)
|.. ..+++ ++..+ .+|..++.-.|.=.|.+|-+-..+ +|...
T Consensus 265 ~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~ 344 (609)
T KOG4227|consen 265 GKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEI 344 (609)
T ss_pred cCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhh
Confidence 110 00111 11111 112222233444457777553221 12111
Q ss_pred e----eeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECC
Q 000736 384 Y----LFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1323)
Q Consensus 384 ~----~~~l-~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~ 423 (1323)
. +-.| .|.+-++.|.|+|.. ++|++.+..+.++||.--
T Consensus 345 ~i~~~~~VLrGHRSv~NQVRF~~H~--~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 345 FIEKELTVLRGHRSVPNQVRFSQHN--NLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eecceeEEEecccccccceeecCCc--ceEeccchhhheeccccc
Confidence 1 1112 367778999999999 899999999999999753
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.6e-08 Score=107.48 Aligned_cols=253 Identities=14% Similarity=0.154 Sum_probs=161.1
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeE--EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCce---
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT--EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDL--- 149 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~--e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~--- 149 (1323)
.+.|+++-|-..++ |.+|+..|-|++|.+++..- .+-+.+...|+.+.--|+ ..|.+-+.|.++.+|+..+..
T Consensus 14 ~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~ 91 (323)
T KOG0322|consen 14 SSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFIS 91 (323)
T ss_pred cchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEE
Confidence 46788888877765 88899999999999998542 233445678999999998 567788899999999865521
Q ss_pred eeeeeecccC--------CCcee-----------cc---------Cccc-------cCCCCeEEEEEec-CCcEEEEeec
Q 000736 150 LYENPLEELA--------EGFDV-----------HE---------PELS-------SSFSFKSPISWRG-DGKYFATLSE 193 (1323)
Q Consensus 150 ~~e~~l~~~~--------~~~~V-----------s~---------tqf~-------~~~~~i~~isWsp-DG~~lAtvss 193 (1323)
+..+.+.... .++.. .+ +|.+ +..+.+.+..|-- +|.+|.-.++
T Consensus 92 i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaG 171 (323)
T KOG0322|consen 92 IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAG 171 (323)
T ss_pred EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEe
Confidence 1111111111 00100 01 1111 2345677777754 3444332554
Q ss_pred cccccCCCCEEEEEECCCCce----------eeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCe---
Q 000736 194 FCNSSKLHKRLKVWERDSGTL----------QASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL--- 260 (1323)
Q Consensus 194 ~d~~~~~d~~IrVWd~~~G~l----------~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl--- 260 (1323)
. +.+.|-+||..+|.. .+-...|...+.++.+-|.-+.=++++.+ ..++.|..|-.
T Consensus 172 y-----Esghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~------dkl~~~Sl~~s~gs 240 (323)
T KOG0322|consen 172 Y-----ESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGAD------DKLVMYSLNHSTGS 240 (323)
T ss_pred c-----cCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcc------ccceeeeeccccCc
Confidence 4 358999999977722 22223467778888887664444444432 34666765421
Q ss_pred -eE-EEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEE
Q 000736 261 -ER-SSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICW 338 (1323)
Q Consensus 261 -~~-~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~ 338 (1323)
.+ ++.+++.+ .|..+..-||+++||+++.|+ .|+++++.+. .| |++.
T Consensus 241 lq~~~e~~lknp---Gv~gvrIRpD~KIlATAGWD~---RiRVyswrtl-----------------------~p--LAVL 289 (323)
T KOG0322|consen 241 LQIRKEITLKNP---GVSGVRIRPDGKILATAGWDH---RIRVYSWRTL-----------------------NP--LAVL 289 (323)
T ss_pred ccccceEEecCC---CccceEEccCCcEEeecccCC---cEEEEEeccC-----------------------Cc--hhhh
Confidence 12 22233323 478889999999999999988 6777654331 11 1111
Q ss_pred ecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEE
Q 000736 339 TLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLC 418 (1323)
Q Consensus 339 ~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~ 418 (1323)
. .|.+.|++||||||. +.+|+++.|++|.
T Consensus 290 k-------------------------------------------------yHsagvn~vAfspd~--~lmAaaskD~rIS 318 (323)
T KOG0322|consen 290 K-------------------------------------------------YHSAGVNAVAFSPDC--ELMAAASKDARIS 318 (323)
T ss_pred h-------------------------------------------------hhhcceeEEEeCCCC--chhhhccCCceEE
Confidence 1 256789999999997 7999999999999
Q ss_pred EEEC
Q 000736 419 VVDL 422 (1323)
Q Consensus 419 lw~~ 422 (1323)
||++
T Consensus 319 LWkL 322 (323)
T KOG0322|consen 319 LWKL 322 (323)
T ss_pred eeec
Confidence 9986
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.1e-07 Score=106.00 Aligned_cols=193 Identities=13% Similarity=0.230 Sum_probs=134.4
Q ss_pred CCEEEEEECCCCceeeeeccCCCceeEEEEcc--CCCeEEEEecCCCCCCCCeEEEEeCCCe-eEEEEEeccCCCCcEEE
Q 000736 201 HKRLKVWERDSGTLQASSELKAFMGAVLEWMP--SGANIAAVYDRKSENKCPSIVFYERNGL-ERSSFDINEQIDSTVEL 277 (1323)
Q Consensus 201 d~~IrVWd~~~G~l~~t~e~~~~~v~slawsP--dG~lIAs~s~d~~~~~~~~V~~~e~nGl-~~~~f~l~~~~~~~V~~ 277 (1323)
.+.||+||..+|+.+..+.+++..++.+.|.- ++..+-|++.| +.|++||..-. +...+....+....-.+
T Consensus 49 ngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssD------G~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ 122 (376)
T KOG1188|consen 49 NGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSD------GTVRLWDIRSQAESARISWTQQSGTPFIC 122 (376)
T ss_pred CCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccC------CeEEEEEeecchhhhheeccCCCCCcceE
Confidence 58999999999999999999999889999977 56778888876 46999994211 11111111121235678
Q ss_pred EEEccCCCeeEEEEccCCCC-eEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeC
Q 000736 278 LKWNCMSDLLAAVVRFEEYD-SVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVM 356 (1323)
Q Consensus 278 laWSpDg~~LA~~~~d~~~~-~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~ 356 (1323)
++-++.+.++|.++.-...+ .|.|||+.+..-.+.+-...|.++.+.+.|||..|..|..++-||-+. +|++.-+
T Consensus 123 ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvn----lfD~~~d 198 (376)
T KOG1188|consen 123 LDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVN----LFDTKKD 198 (376)
T ss_pred eeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEE----eeecCCC
Confidence 88899999999997643222 799999987542222333345566799999999999888877777443 2333211
Q ss_pred CCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCCCC
Q 000736 357 ENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPD 426 (1323)
Q Consensus 357 d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~ 426 (1323)
+...++ ..++.+.+.|..+.|..++ -+.|-+.++.+++.+|++....
T Consensus 199 ---------------------~EeDaL-~~viN~~sSI~~igw~~~~-ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 199 ---------------------NEEDAL-LHVINHGSSIHLIGWLSKK-YKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred ---------------------cchhhH-HHhhcccceeeeeeeecCC-cceEEEEEccCceeEEEccCCC
Confidence 111111 1244567889999999887 2579999999999999998654
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.5e-09 Score=112.01 Aligned_cols=157 Identities=14% Similarity=0.093 Sum_probs=117.8
Q ss_pred CCEEEEEEec-CCC--EEEEEeCCCcEEEEeCCCC----------eEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEE
Q 000736 76 DSITAFDYLM-EKE--ALIVGTSSGLLLLHSVDGN----------ATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQIL 141 (1323)
Q Consensus 76 ~~V~~v~~sp-dg~--~La~as~dG~I~lw~~~~~----------~~e-~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~ 141 (1323)
+.|.+..|-. ++. .|+.|.++|.|.+||++++ +.+ -...|...|.++.+.|.-..=++++.+..+.
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~ 230 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV 230 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccce
Confidence 5566665432 232 5668899999999999875 221 2445788999999988777777888888899
Q ss_pred EEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccC
Q 000736 142 VMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK 221 (1323)
Q Consensus 142 l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~ 221 (1323)
+|+-+|+.-.- ++. +.+. -...++..+..||||+.|| +++ .|++||||+-.+++.+..+..|
T Consensus 231 ~~Sl~~s~gsl-q~~-----~e~~-----lknpGv~gvrIRpD~KIlA-TAG------WD~RiRVyswrtl~pLAVLkyH 292 (323)
T KOG0322|consen 231 MYSLNHSTGSL-QIR-----KEIT-----LKNPGVSGVRIRPDGKILA-TAG------WDHRIRVYSWRTLNPLAVLKYH 292 (323)
T ss_pred eeeeccccCcc-ccc-----ceEE-----ecCCCccceEEccCCcEEe-ecc------cCCcEEEEEeccCCchhhhhhh
Confidence 99877764221 111 0000 0123677899999999999 553 4689999998899999999999
Q ss_pred CCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEe
Q 000736 222 AFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE 256 (1323)
Q Consensus 222 ~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e 256 (1323)
.+.++++||+|+-.++|+++.| ..|.+|.
T Consensus 293 sagvn~vAfspd~~lmAaaskD------~rISLWk 321 (323)
T KOG0322|consen 293 SAGVNAVAFSPDCELMAAASKD------ARISLWK 321 (323)
T ss_pred hcceeEEEeCCCCchhhhccCC------ceEEeee
Confidence 9999999999999999999986 4699996
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.3e-06 Score=100.43 Aligned_cols=322 Identities=16% Similarity=0.166 Sum_probs=187.9
Q ss_pred CEEEEEeCCCc--EEEEeCCCCeE-EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe-ecCceeeeeeecccCCCce
Q 000736 88 EALIVGTSSGL--LLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFD 163 (1323)
Q Consensus 88 ~~La~as~dG~--I~lw~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t-~~~d~~~e~~l~~~~~~~~ 163 (1323)
++.|+....++ ...||...... .+...-.=.=+-+.|||-|.+|++--.-| |.+|. .+|+-+.... |
T Consensus 179 DQf~v~~d~~~~~svfwN~~~n~p~~ie~RenWTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H------- 249 (698)
T KOG2314|consen 179 DQFVVQDDVKTTVSVFWNSKFNEPSLIEERENWTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H------- 249 (698)
T ss_pred ceEEEEecCcceeEEEccccCCchhhhhhhhcceeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C-------
Confidence 35666666555 55688654321 12221111235689999999999987765 77884 5566543322 2
Q ss_pred eccCccccCCCCeEEEEEecCCcEEEEeeccccc-----cCCCCEEEEEECCCCceeeeeccCC--Cce-eEEEEccCCC
Q 000736 164 VHEPELSSSFSFKSPISWRGDGKYFATLSEFCNS-----SKLHKRLKVWERDSGTLQASSELKA--FMG-AVLEWMPSGA 235 (1323)
Q Consensus 164 Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~-----~~~d~~IrVWd~~~G~l~~t~e~~~--~~v-~slawsPdG~ 235 (1323)
..+.-|.|||.-+||+|-|. .+. +.+...++|||..+|.+..++.... ... .-..||-|++
T Consensus 250 ----------p~Vq~idfSP~EkYLVT~s~-~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdK 318 (698)
T KOG2314|consen 250 ----------PGVQFIDFSPNEKYLVTYSP-EPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDK 318 (698)
T ss_pred ----------CCceeeecCCccceEEEecC-CccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCc
Confidence 24577999999999995442 222 1234689999999999988876422 222 4568999999
Q ss_pred eEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec-c--CCCCcEEEEEEccCCCeeEEEEccCCCC--eEEEEEeeCCeeE
Q 000736 236 NIAAVYDRKSENKCPSIVFYERNGLERSSFDIN-E--QIDSTVELLKWNCMSDLLAAVVRFEEYD--SVKICFFSNNHWY 310 (1323)
Q Consensus 236 lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~-~--~~~~~V~~laWSpDg~~LA~~~~d~~~~--~V~LW~~~n~~wy 310 (1323)
++|.... +.|.+||.-. |-|- . -.-..|...+|||-+++||.++...... .+.|-.+-.
T Consensus 319 y~Arm~~-------~sisIyEtps-----f~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs---- 382 (698)
T KOG2314|consen 319 YFARMTG-------NSISIYETPS-----FMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPS---- 382 (698)
T ss_pred eeEEecc-------ceEEEEecCc-----eeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCc----
Confidence 9998765 3688898532 2221 0 0124588999999999999998764211 454544433
Q ss_pred EEeEEEEec-CCc--EEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeee
Q 000736 311 LKYEIRYLR-RDG--IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFS 387 (1323)
Q Consensus 311 lkq~l~~~~-~~~--~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~ 387 (1323)
+++|+.-. -.. ..+.|-..|.+ |++-. -..+...-.++. .++-+..++...+|- -.
T Consensus 383 -~~~iRt~nlfnVsDckLhWQk~gdy-Lcvkv----------dR~tK~~~~g~f-----~n~eIfrireKdIpv----e~ 441 (698)
T KOG2314|consen 383 -KREIRTKNLFNVSDCKLHWQKSGDY-LCVKV----------DRHTKSKVKGQF-----SNLEIFRIREKDIPV----EV 441 (698)
T ss_pred -cceeeeccceeeeccEEEeccCCcE-EEEEE----------EeeccccccceE-----eeEEEEEeeccCCCc----ee
Confidence 23333210 001 23445544433 22111 000000001111 123344455555542 23
Q ss_pred ecCCCCEEEEEEecCCCCCEEEEEECC---CcEEEEECCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEE
Q 000736 388 LKFPTAVTEMAFYSKSSKNCLAAILSD---GCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSV 464 (1323)
Q Consensus 388 l~~~~~V~~VaFSpdg~~~~LAs~s~D---gti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~ 464 (1323)
+++.+.|...+|-|.| +.+|+.+.+ .++.+|...+. ++.+.....+ ......++.|+|.|+++++
T Consensus 442 velke~vi~FaWEP~g--dkF~vi~g~~~k~tvsfY~~e~~-------~~~~~lVk~~---dk~~~N~vfwsPkG~fvvv 509 (698)
T KOG2314|consen 442 VELKESVIAFAWEPHG--DKFAVISGNTVKNTVSFYAVETN-------IKKPSLVKEL---DKKFANTVFWSPKGRFVVV 509 (698)
T ss_pred eecchheeeeeeccCC--CeEEEEEccccccceeEEEeecC-------CCchhhhhhh---cccccceEEEcCCCcEEEE
Confidence 5678899999999999 888887654 68888887631 1111111111 1125778999999999988
Q ss_pred EecCC-CCeeEEEEe
Q 000736 465 SHHGP-RHSNYFRGA 478 (1323)
Q Consensus 465 ~~~~~-~~~~~~~~~ 478 (1323)
+.-.+ ...+.++..
T Consensus 510 a~l~s~~g~l~F~D~ 524 (698)
T KOG2314|consen 510 AALVSRRGDLEFYDT 524 (698)
T ss_pred EEecccccceEEEec
Confidence 76432 244555554
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.1e-07 Score=114.07 Aligned_cols=295 Identities=13% Similarity=0.098 Sum_probs=169.4
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeE-EEe--c-eecCcEEEEEEc--CCCCeEEEEeCCccEEEEeecCcee
Q 000736 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVV--G-RVEGGVRFISPS--PDGDLLGVTTGFGQILVMTHDWDLL 150 (1323)
Q Consensus 77 ~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~-e~v--g-~~~~~I~~~awS--PDG~~LA~~s~d~tV~l~t~~~d~~ 150 (1323)
....+.|+|=...++++.+.-.|.+||-..+++ .-+ | ....+|..+.+= -|-.+|.+++.||.|++|.. +...
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~-y~~~ 1144 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKD-YADK 1144 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecc-cccc
Confidence 356788889888999988788899999865443 211 1 124568888773 35678999999999999942 2211
Q ss_pred -eeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeee-ccCCCceeEE
Q 000736 151 -YENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-ELKAFMGAVL 228 (1323)
Q Consensus 151 -~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~-e~~~~~v~sl 228 (1323)
....+.+.. ..+ +.+..+..+.-.-+.|--...+|. +++ +-+.|||||...-.+.... -+.+..++++
T Consensus 1145 ~~~~eLVTaw--~~L-s~~~~~~r~~~~v~dWqQ~~G~Ll-~tG------d~r~IRIWDa~~E~~~~diP~~s~t~vTaL 1214 (1387)
T KOG1517|consen 1145 WKKPELVTAW--SSL-SDQLPGARGTGLVVDWQQQSGHLL-VTG------DVRSIRIWDAHKEQVVADIPYGSSTLVTAL 1214 (1387)
T ss_pred cCCceeEEee--ccc-cccCccCCCCCeeeehhhhCCeEE-ecC------CeeEEEEEecccceeEeecccCCCccceee
Confidence 111111100 000 111111112225678988777777 442 2489999999443333321 1233445665
Q ss_pred EE-ccCCCeEEEEecCCCCCCCCeEEEEeCCCe-eEEEEEeccCCCCc--EEEEEEccCCCe-eEEEEccCCCCeEEEEE
Q 000736 229 EW-MPSGANIAAVYDRKSENKCPSIVFYERNGL-ERSSFDINEQIDST--VELLKWNCMSDL-LAAVVRFEEYDSVKICF 303 (1323)
Q Consensus 229 aw-sPdG~lIAs~s~d~~~~~~~~V~~~e~nGl-~~~~f~l~~~~~~~--V~~laWSpDg~~-LA~~~~d~~~~~V~LW~ 303 (1323)
+= .+.|+.||+|-.| +.|++||+--- +..-.....++... |..+.+.+.|-- |++++.+| .|++||
T Consensus 1215 S~~~~~gn~i~AGfaD------GsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G---~I~~~D 1285 (1387)
T KOG1517|consen 1215 SADLVHGNIIAAGFAD------GSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDG---DIQLLD 1285 (1387)
T ss_pred cccccCCceEEEeecC------CceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCC---eEEEEe
Confidence 43 3457999999886 46999995311 11101111122333 999999998876 99999999 899999
Q ss_pred eeCCe--eEEEeEEEEec--CC-cEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcC
Q 000736 304 FSNNH--WYLKYEIRYLR--RD-GIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSL 378 (1323)
Q Consensus 304 ~~n~~--wylkq~l~~~~--~~-~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~ 378 (1323)
..... -++ .+..+- ++ .+.+.=|+..+. ++++ .++.+++|++.+..
T Consensus 1286 lR~~~~e~~~--~iv~~~~yGs~lTal~VH~hapi-iAsG--------------------------s~q~ikIy~~~G~~ 1336 (1387)
T KOG1517|consen 1286 LRMSSKETFL--TIVAHWEYGSALTALTVHEHAPI-IASG--------------------------SAQLIKIYSLSGEQ 1336 (1387)
T ss_pred cccCcccccc--eeeeccccCccceeeeeccCCCe-eeec--------------------------CcceEEEEecChhh
Confidence 86410 011 111110 11 133334444332 2222 22344444443321
Q ss_pred C----CCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCC
Q 000736 379 M----PPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1323)
Q Consensus 379 v----Pppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~ 424 (1323)
+ +.|... -+-.+.+.+++|+|.. -+||+|..|.+|.||..+.
T Consensus 1337 l~~~k~n~~F~--~q~~gs~scL~FHP~~--~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1337 LNIIKYNPGFM--GQRIGSVSCLAFHPHR--LLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred hcccccCcccc--cCcCCCcceeeecchh--HhhhhccCCceEEEeecCC
Confidence 1 112110 0123456899999998 7899999999999999864
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.3e-07 Score=114.10 Aligned_cols=252 Identities=12% Similarity=0.044 Sum_probs=158.6
Q ss_pred ceeEEeeecC-CCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCE--EEEEeCCCc
Q 000736 22 ILQFSALDIE-QNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEA--LIVGTSSGL 98 (1323)
Q Consensus 22 ~~~~~~~d~~-~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~--La~as~dG~ 98 (1323)
.+.++.|-+. .+.|+.++.+++|..||+ ..+.. ++++.+..+.-...+.++.+.|..+-.- ++++|.||.
T Consensus 244 ~v~~~~f~p~~p~ll~gG~y~GqV~lWD~--~~~~~-----~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~ 316 (555)
T KOG1587|consen 244 EVTCLKFCPFDPNLLAGGCYNGQVVLWDL--RKGSD-----TPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGS 316 (555)
T ss_pred ceeEEEeccCCcceEEeeccCceEEEEEc--cCCCC-----CCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCc
Confidence 5666666654 466777788999999999 33332 1122222111122568999999776554 889999999
Q ss_pred EEEEeCCCCe-------EEEec------eecCcEEEEEEcCC-CCeEEEEeCCccEEEEeecCceeee-eeecccCCCce
Q 000736 99 LLLHSVDGNA-------TEVVG------RVEGGVRFISPSPD-GDLLGVTTGFGQILVMTHDWDLLYE-NPLEELAEGFD 163 (1323)
Q Consensus 99 I~lw~~~~~~-------~e~vg------~~~~~I~~~awSPD-G~~LA~~s~d~tV~l~t~~~d~~~e-~~l~~~~~~~~ 163 (1323)
|..|+.+.-. .+..- .-..++++++|.|- =..+.+||.+|.|.-=++..-.... ......
T Consensus 317 i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~----- 391 (555)
T KOG1587|consen 317 ICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGH----- 391 (555)
T ss_pred EeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccc-----
Confidence 9999886411 11111 12357899999774 3568888999988653332111111 111110
Q ss_pred eccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECC-CCceeeeeccCCCceeEEEEccCCC-eEEEEe
Q 000736 164 VHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAFMGAVLEWMPSGA-NIAAVY 241 (1323)
Q Consensus 164 Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~-~G~l~~t~e~~~~~v~slawsPdG~-lIAs~s 241 (1323)
.++..|.+.+..|.|+|=+.-+..++ +|-++|||.-. .-..+..++.....+.+++|||--- .+|++.
T Consensus 392 ---~~~~~h~g~v~~v~~nPF~~k~fls~-------gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d 461 (555)
T KOG1587|consen 392 ---STFITHIGPVYAVSRNPFYPKNFLSV-------GDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVD 461 (555)
T ss_pred ---ccccccCcceEeeecCCCccceeeee-------ccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEc
Confidence 12336788999999999886443132 25799999874 3334444455556689999999875 455555
Q ss_pred cCCCCCCCCeEEEEeCCCeeEEEEEecc-CCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee
Q 000736 242 DRKSENKCPSIVFYERNGLERSSFDINE-QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1323)
Q Consensus 242 ~d~~~~~~~~V~~~e~nGl~~~~f~l~~-~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~ 305 (1323)
.+ +.|-+||.+-...+ -+... ........+.|+++|++||+|...| ++.+|++.
T Consensus 462 ~~------G~l~iWDLl~~~~~-Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G---~~~~~~l~ 516 (555)
T KOG1587|consen 462 GD------GNLDIWDLLQDDEE-PVLSQKVCSPALTRVRWSPNGKLLAVGDANG---TTHILKLS 516 (555)
T ss_pred CC------CceehhhhhccccC-CcccccccccccceeecCCCCcEEEEecCCC---cEEEEEcC
Confidence 44 56999995422111 01110 1123456789999999999999988 89999985
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.1e-07 Score=98.76 Aligned_cols=266 Identities=15% Similarity=0.211 Sum_probs=172.9
Q ss_pred eEEEEEe--cCCc-EEEEeeccccccCCCCEEEEEE--CCCCceeeee-ccCCCceeEEEEccCC-----CeEEEEecCC
Q 000736 176 KSPISWR--GDGK-YFATLSEFCNSSKLHKRLKVWE--RDSGTLQASS-ELKAFMGAVLEWMPSG-----ANIAAVYDRK 244 (1323)
Q Consensus 176 i~~isWs--pDG~-~lAtvss~d~~~~~d~~IrVWd--~~~G~l~~t~-e~~~~~v~slawsPdG-----~lIAs~s~d~ 244 (1323)
...+.|| ||.+ ++| ++++..+ ..++|.|-. -++|++.... -.|.++++.+.|.||. .+||++++
T Consensus 47 lya~~Ws~~~~~~~rla-~gS~~Ee--~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D-- 121 (364)
T KOG0290|consen 47 LYAMNWSVRPDKKFRLA-VGSFIEE--YNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSD-- 121 (364)
T ss_pred eeeeccccCCCcceeEE-Eeeeccc--cCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccC--
Confidence 4677787 5544 677 8887543 346666653 3466665542 2488899999999997 47898876
Q ss_pred CCCCCCeEEEEeCCC---eeEEEEEec----cCCCCcEEEEEEcc-CCCeeEEEEccCCCCeEEEEEeeCC-eeEEEeEE
Q 000736 245 SENKCPSIVFYERNG---LERSSFDIN----EQIDSTVELLKWNC-MSDLLAAVVRFEEYDSVKICFFSNN-HWYLKYEI 315 (1323)
Q Consensus 245 ~~~~~~~V~~~e~nG---l~~~~f~l~----~~~~~~V~~laWSp-Dg~~LA~~~~d~~~~~V~LW~~~n~-~wylkq~l 315 (1323)
.+++|..+- ..+-+..|. .+....+.+..|+. |=.++.+.+-|. |-.+|++... --+.|-.+
T Consensus 122 ------~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT---TCTiWdie~~~~~~vkTQL 192 (364)
T KOG0290|consen 122 ------FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT---TCTIWDIETGVSGTVKTQL 192 (364)
T ss_pred ------eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC---eEEEEEEeeccccceeeEE
Confidence 489997542 111111222 12235688999996 566777888888 9999999864 33556566
Q ss_pred EEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEE---eee----eC-------------CC-eeE-EEEeCCEEEEee
Q 000736 316 RYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIW---TTA----VM-------------EN-STA-LVIDGSKILVTP 373 (1323)
Q Consensus 316 ~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~---~~~----~~-------------d~-~~v-~viDg~~l~lt~ 373 (1323)
..|.++...++|...+...++....||.+...+..- ++- |. |. -++ ..-|.+.|.+-+
T Consensus 193 IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD 272 (364)
T KOG0290|consen 193 IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD 272 (364)
T ss_pred EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence 666666688999987777778888899987654321 110 11 11 112 235778888888
Q ss_pred cCCcCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCCCCccccccCCceeEeeeccccccCcEEE
Q 000736 374 LSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIH 452 (1323)
Q Consensus 374 l~~~~vPppm~~~~l-~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~ 452 (1323)
+|.-- +...+| .|.+.|+.|+|.|.. ...|++++.|..+.+|++...... .+ . .+.+.-.....|.+
T Consensus 273 iR~P~----tpva~L~~H~a~VNgIaWaPhS-~~hictaGDD~qaliWDl~q~~~~---~~--~--dPilay~a~~EVNq 340 (364)
T KOG0290|consen 273 IRVPC----TPVARLRNHQASVNGIAWAPHS-SSHICTAGDDCQALIWDLQQMPRE---NG--E--DPILAYTAGGEVNQ 340 (364)
T ss_pred ecCCC----cceehhhcCcccccceEecCCC-CceeeecCCcceEEEEeccccccc---CC--C--Cchhhhhccceeee
Confidence 87422 222356 499999999999997 489999999999999999752110 01 0 01010112347999
Q ss_pred EEEec-CCeEEEEEec
Q 000736 453 LIWLG-SHLLLSVSHH 467 (1323)
Q Consensus 453 l~~~~-d~~lla~~~~ 467 (1323)
+.|++ .+..+|+++.
T Consensus 341 i~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 341 IQWSSSQPDWIAICFG 356 (364)
T ss_pred eeecccCCCEEEEEec
Confidence 99995 4556777654
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.3e-06 Score=114.61 Aligned_cols=261 Identities=14% Similarity=0.055 Sum_probs=154.7
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeecccc-cccccc---C--CCCCCEEEEEEecCCCEEEEEe
Q 000736 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISA-EIEHID---L--EPGDSITAFDYLMEKEALIVGT 94 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~l~~-~~~~~~---~--~~~~~V~~v~~spdg~~La~as 94 (1323)
.+..+++|..++.||++.. ++.|..+|.+ +.. +.++.. +-.+.. + ..-..+.+|++.+++..|.++.
T Consensus 569 ~P~gvavd~~~g~lyVaDs~n~rI~v~d~~---G~~---i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaD 642 (1057)
T PLN02919 569 FPGKLAIDLLNNRLFISDSNHNRIVVTDLD---GNF---IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVAD 642 (1057)
T ss_pred CCceEEEECCCCeEEEEECCCCeEEEEeCC---CCE---EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEe
Confidence 3457899999898998854 6679999983 221 111111 100000 0 0013578999999998776654
Q ss_pred -CCCcEEEEeCCCCeEEEe-ce------ec----------CcEEEEEEcC-CCCeEEEEeCCccEEEEeecCceeeeeee
Q 000736 95 -SSGLLLLHSVDGNATEVV-GR------VE----------GGVRFISPSP-DGDLLGVTTGFGQILVMTHDWDLLYENPL 155 (1323)
Q Consensus 95 -~dG~I~lw~~~~~~~e~v-g~------~~----------~~I~~~awSP-DG~~LA~~s~d~tV~l~t~~~d~~~e~~l 155 (1323)
.++.|+.+|..++.+..+ |. .. ..-+.++|+| +|.+.++.+++++|.+|+.....+.....
T Consensus 643 t~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G 722 (1057)
T PLN02919 643 TENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSG 722 (1057)
T ss_pred CCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEec
Confidence 456789999988776543 21 00 1235789999 56666777788899888643222221110
Q ss_pred cccC---CCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeee--cc----------
Q 000736 156 EELA---EGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS--EL---------- 220 (1323)
Q Consensus 156 ~~~~---~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~--e~---------- 220 (1323)
.... .+.......| .....|+|+|||+++. ++. .++++|++||..+|...... .+
T Consensus 723 ~G~~~~~~g~~~~~~~~----~~P~GIavspdG~~LY-VAD-----s~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG 792 (1057)
T PLN02919 723 DGYERNLNGSSGTSTSF----AQPSGISLSPDLKELY-IAD-----SESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFG 792 (1057)
T ss_pred CCccccCCCCccccccc----cCccEEEEeCCCCEEE-EEE-----CCCCeEEEEECCCCcEEEEEecccccCccccccc
Confidence 0000 0000000111 2346799999998655 442 34689999998666532110 00
Q ss_pred -CCC--------ceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccC-----------CCCcEEEEEE
Q 000736 221 -KAF--------MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQ-----------IDSTVELLKW 280 (1323)
Q Consensus 221 -~~~--------~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~-----------~~~~V~~laW 280 (1323)
.++ .-..++|+|+|+++++-+. .+.|+.|+.++.....+.-.+. .-.....|++
T Consensus 793 ~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~------N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIav 866 (1057)
T PLN02919 793 DHDGVGSEVLLQHPLGVLCAKDGQIYVADSY------NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLAL 866 (1057)
T ss_pred CCCCchhhhhccCCceeeEeCCCcEEEEECC------CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEE
Confidence 011 1258999999997666554 4689999976543322211110 0124678999
Q ss_pred ccCCCeeEEEEccCCCCeEEEEEeeCC
Q 000736 281 NCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1323)
Q Consensus 281 SpDg~~LA~~~~d~~~~~V~LW~~~n~ 307 (1323)
+|||+++++-+.+. +|++|+..+.
T Consensus 867 d~dG~lyVaDt~Nn---~Irvid~~~~ 890 (1057)
T PLN02919 867 GENGRLFVADTNNS---LIRYLDLNKG 890 (1057)
T ss_pred eCCCCEEEEECCCC---EEEEEECCCC
Confidence 99999887766665 9999999764
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.4e-07 Score=102.76 Aligned_cols=277 Identities=12% Similarity=0.103 Sum_probs=167.6
Q ss_pred cCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCC------ceeee-eccCCCceeEEEEccCCCeEEEEecC
Q 000736 171 SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG------TLQAS-SELKAFMGAVLEWMPSGANIAAVYDR 243 (1323)
Q Consensus 171 ~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G------~l~~t-~e~~~~~v~slawsPdG~lIAs~s~d 243 (1323)
+|.+-|..|.||.+|++|| ++ +.|+.++||+.++. +.+.. .++|...+.+|+|.-....+.||..+
T Consensus 54 ~H~GCiNAlqFS~N~~~L~-SG------GDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLA-SG------GDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhccccceeeeccCCeEEe-ec------CCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 6778899999999999999 65 34699999998432 22332 34566788999999988999999886
Q ss_pred CCCCCCCeEEEEeCCCeeEEEEEec-cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCc
Q 000736 244 KSENKCPSIVFYERNGLERSSFDIN-EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG 322 (1323)
Q Consensus 244 ~~~~~~~~V~~~e~nGl~~~~f~l~-~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~ 322 (1323)
. +|...+...... .+... ....+.|+.+.-+|--.+||+.+.++ .|-+||.....- .-++....+.+
T Consensus 127 ~------~VI~HDiEt~qs-i~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~---~V~~~D~Rd~~~--~~~~~~~AN~~ 194 (609)
T KOG4227|consen 127 G------TVIKHDIETKQS-IYVANENNNRGDVYHMDQHPTDNTLIVVTRAK---LVSFIDNRDRQN--PISLVLPANSG 194 (609)
T ss_pred c------eeEeeeccccee-eeeecccCcccceeecccCCCCceEEEEecCc---eEEEEeccCCCC--CCceeeecCCC
Confidence 4 577777543221 11111 12235799999999999999999998 899999763210 01233333333
Q ss_pred ---EEEEEccCCCcEEEEEecCCcEEEEEEEEeee---------------eCC----CeeEEEEeCCEEEEeecCCcCCC
Q 000736 323 ---IRFMWHPTKPLQLICWTLDGQITTYNFIWTTA---------------VME----NSTALVIDGSKILVTPLSLSLMP 380 (1323)
Q Consensus 323 ---~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~---------------~~d----~~~v~viDg~~l~lt~l~~~~vP 380 (1323)
.++.|+|+.|..|.+.+..|... +|+.- +.. .+......|+.++ .++... |
T Consensus 195 ~~F~t~~F~P~~P~Li~~~~~~~G~~----~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~m--siRR~~-~ 267 (609)
T KOG4227|consen 195 KNFYTAEFHPETPALILVNSETGGPN----VFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFM--SIRRGK-C 267 (609)
T ss_pred ccceeeeecCCCceeEEeccccCCCC----ceeeccccchHHhhhccccCcccchhhhheeeCCCCCeeh--hhhccC-C
Confidence 67899999998777766555443 23322 110 0111112333321 222221 2
Q ss_pred CCce------eeeecCC---------CCEEEEEEecCCCCCEEEEEECCCcEEEEECCCCCcc-c-cccCCc-------e
Q 000736 381 PPMY------LFSLKFP---------TAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDML-E-DLEGTE-------F 436 (1323)
Q Consensus 381 ppm~------~~~l~~~---------~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~-~-~~~g~~-------~ 436 (1323)
|-.. ...++++ ..+.+..|.-|- .+|+++.+-.|++|.++..... + +.-|+. +
T Consensus 268 P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~---~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~ 344 (609)
T KOG4227|consen 268 PLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY---TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEI 344 (609)
T ss_pred CEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce---eeeccCcccceEEEecCCCccccCccccCcchhhCchhh
Confidence 1110 0112211 135677887764 6999999999999999642111 0 001110 0
Q ss_pred eEee--eccccccCcEEEEEEecCCeEEEEEecCCCCeeEEEEe
Q 000736 437 VVEA--CISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1323)
Q Consensus 437 ~~~~--~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1323)
.+.. .++.++...+.++.|+|-..+|++++ ..+.+++|+-
T Consensus 345 ~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSG--VE~~~KlWS~ 386 (609)
T KOG4227|consen 345 FIEKELTVLRGHRSVPNQVRFSQHNNLLVSSG--VENSFKLWSD 386 (609)
T ss_pred eecceeEEEecccccccceeecCCcceEeccc--hhhheecccc
Confidence 1111 12245666789999999888776543 3477888863
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.6e-06 Score=99.35 Aligned_cols=91 Identities=18% Similarity=0.245 Sum_probs=54.8
Q ss_pred eeecCceeEEEeccCccccceEEEEEeeCCeEEEEEcCccccccccccccccccccCccccccccccccccCCCEEEEEe
Q 000736 605 IVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAKVIGVL 684 (1323)
Q Consensus 605 ~~~~~~tSf~~~~~~~~~~~~~Ll~tT~~~~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~R~vErGs~iV~~~ 684 (1323)
++...|.|....++ -++|||.. .|++ -++. ....++.+++---|+++.
T Consensus 194 E~~~~IkSg~W~~d-------~fiYtT~~-~lkY-l~~G-----------------------e~~~i~~ld~~~yllgy~ 241 (443)
T PF04053_consen 194 EISERIKSGCWVED-------CFIYTTSN-HLKY-LVNG-----------------------ETGIIAHLDKPLYLLGYL 241 (443)
T ss_dssp EE-S--SEEEEETT-------EEEEE-TT-EEEE-EETT-----------------------EEEEEEE-SS--EEEEEE
T ss_pred EecceeEEEEEEcC-------EEEEEcCC-eEEE-EEcC-----------------------CcceEEEcCCceEEEEEE
Confidence 45668999999999 99999988 6666 2221 123457888889999999
Q ss_pred CCCCcEEEEEeCCCceeeccchhhhHHHHHHHHhcccHHHHHHHH
Q 000736 685 HGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMV 729 (1323)
Q Consensus 685 p~~~~~vVLQmpRGNLEti~PR~lvL~~i~~~l~~~~y~~Af~~~ 729 (1323)
|+. -+|.+-..-||+..+ +=.+..-.-+.+|-+++|.++..+.
T Consensus 242 ~~~-~~ly~~Dr~~~v~~~-~ld~~~~~fk~av~~~d~~~v~~~i 284 (443)
T PF04053_consen 242 PKE-NRLYLIDRDGNVISY-ELDLSELEFKTAVLRGDFEEVLRMI 284 (443)
T ss_dssp TTT-TEEEEE-TT--EEEE-E--HHHHHHHHHHHTT-HHH-----
T ss_pred ccC-CEEEEEECCCCEEEE-EECHHHHHHHHHHHcCChhhhhhhh
Confidence 987 789999999999988 4444444567777888888875555
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=9.9e-09 Score=124.13 Aligned_cols=255 Identities=15% Similarity=0.084 Sum_probs=174.7
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1323)
.+.|..+|.-+-.|+.+|+|..+..|.. .+..- .++.++| .+.|++++-+...-++|++|.|..|++
T Consensus 192 aVyca~fDrtg~~Iitgsdd~lvKiwS~--et~~~-------lAs~rGh----s~ditdlavs~~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 192 AVYCAIFDRTGRYIITGSDDRLVKIWSM--ETARC-------LASCRGH----SGDITDLAVSSNNTMIAAASNDKVIRV 258 (1113)
T ss_pred heeeeeeccccceEeecCccceeeeeec--cchhh-------hccCCCC----ccccchhccchhhhhhhhcccCceEEE
Confidence 4778889999999999999998888975 33331 1225666 578999999999999999999999999
Q ss_pred EeCCCCeE-EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccC-CCc-eec---cC---ccc--
Q 000736 102 HSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELA-EGF-DVH---EP---ELS-- 170 (1323)
Q Consensus 102 w~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~-~~~-~Vs---~t---qf~-- 170 (1323)
|.+.++.. .++-.|++.|++++|||-. +.+.|||+.+|+..|+++.-.+-.... ... .++ +. .|.
T Consensus 259 Wrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg 334 (1113)
T KOG0644|consen 259 WRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTG 334 (1113)
T ss_pred EecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccc
Confidence 99988654 4444569999999999985 678999999998778876443221111 111 111 11 111
Q ss_pred -----cCCCCeEEEEEecCCcEEEEeeccccc-----cCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEE-E
Q 000736 171 -----SSFSFKSPISWRGDGKYFATLSEFCNS-----SKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIA-A 239 (1323)
Q Consensus 171 -----~~~~~i~~isWspDG~~lAtvss~d~~-----~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIA-s 239 (1323)
+.......++|+..+-.|++.++ |.. +..+..+++|+..+|.+...+.+|...+..+.++|=...|| +
T Consensus 335 s~d~ea~n~e~~~l~~~~~~lif~t~ss-d~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~ms 413 (1113)
T KOG0644|consen 335 SRDGEARNHEFEQLAWRSNLLIFVTRSS-DLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMS 413 (1113)
T ss_pred cCCcccccchhhHhhhhccceEEEeccc-cccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhh
Confidence 11123345667766666663332 110 12346789999999999999999999999999999888776 4
Q ss_pred EecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeC
Q 000736 240 VYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1323)
Q Consensus 240 ~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n 306 (1323)
++.| +...+|+. .|.....+.. + .+.+..-+||+||+.+|..-.-+ .++|..++.
T Consensus 414 ag~d------gst~iwdi~eg~pik~y~~--g-h~kl~d~kFSqdgts~~lsd~hg---ql~i~g~gq 469 (1113)
T KOG0644|consen 414 AGYD------GSTIIWDIWEGIPIKHYFI--G-HGKLVDGKFSQDGTSIALSDDHG---QLYILGTGQ 469 (1113)
T ss_pred ccCC------CceEeeecccCCcceeeec--c-cceeeccccCCCCceEecCCCCC---ceEEeccCC
Confidence 4554 34567773 3433222222 1 34677889999999988765444 577766654
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.1e-06 Score=98.32 Aligned_cols=324 Identities=14% Similarity=0.198 Sum_probs=182.6
Q ss_pred cEEEEeCCCCe--EEEecee--cCcEEEEEEcCCCCeEEEEeCCccEEEEeec-CceeeeeeecccCCCceeccCccccC
Q 000736 98 LLLLHSVDGNA--TEVVGRV--EGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSS 172 (1323)
Q Consensus 98 ~I~lw~~~~~~--~e~vg~~--~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~-~d~~~e~~l~~~~~~~~Vs~tqf~~~ 172 (1323)
.+.+|+..+.. ....+.. .-..+..++||+|+++|..+++ .++|.+.. .+++....+
T Consensus 12 ~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~~~-~v~i~~~~~~~~~lt~~~----------------- 73 (566)
T KOG2315|consen 12 GFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSDNQ-VVKVFEIATLKVVLCVEL----------------- 73 (566)
T ss_pred eeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEcCC-eEEEEEccCCcEEEEecc-----------------
Confidence 47788865421 1122221 2336788999999999998876 45554321 112111111
Q ss_pred CCCeEEEEEecCCcEEEEeeccccc------cCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCC
Q 000736 173 FSFKSPISWRGDGKYFATLSEFCNS------SKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSE 246 (1323)
Q Consensus 173 ~~~i~~isWspDG~~lAtvss~d~~------~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~ 246 (1323)
.....+-|||-|.||. . ..+- ..+..-++||+.++|.+.+.........+.+.||+|-.+.|=..
T Consensus 74 -~~~~~L~fSP~g~yL~-T--~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv----- 144 (566)
T KOG2315|consen 74 -KKTYDLLFSPKGNYLL-T--WEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLV----- 144 (566)
T ss_pred -ceeeeeeecccccccc-c--ccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhhh-----
Confidence 1347899999999987 2 2111 01224588999988776665433222225889999987765332
Q ss_pred CCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCC--eeEEEEccCC--CCeEEEEEee--CCeeEEEeEEEEecC
Q 000736 247 NKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSD--LLAAVVRFEE--YDSVKICFFS--NNHWYLKYEIRYLRR 320 (1323)
Q Consensus 247 ~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~--~LA~~~~d~~--~~~V~LW~~~--n~~wylkq~l~~~~~ 320 (1323)
.+.|.||+.++-..-.-.|+ ...|..+++||-++ .+|+-.-..+ -..|+||... +.|--+ ..-.|...
T Consensus 145 --~nev~f~~~~~f~~~~~kl~---~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~-a~ksFFka 218 (566)
T KOG2315|consen 145 --SNEVQFYDLGSFKTIQHKLS---VSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPV-ANKSFFKA 218 (566)
T ss_pred --cceEEEEecCCccceeeeee---ccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchh-hhcccccc
Confidence 35799999776332222232 34688999999765 4554432221 2289999976 332111 11113233
Q ss_pred CcEEEEEccCCCcEEEEEe--------------------cCCcE---------EEEEEEEeeeeCCCeeEEEEe--CCEE
Q 000736 321 DGIRFMWHPTKPLQLICWT--------------------LDGQI---------TTYNFIWTTAVMENSTALVID--GSKI 369 (1323)
Q Consensus 321 ~~~~v~Wsp~~~~~L~~~~--------------------~~g~~---------~~~~~~~~~~~~d~~~v~viD--g~~l 369 (1323)
+.+.+.|.+-+.-.|.+.+ .+|.- -++++.|+.+ +.-.++|-. -.++
T Consensus 219 dkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s--~~EF~VvyGfMPAkv 296 (566)
T KOG2315|consen 219 DKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPS--GREFAVVYGFMPAKV 296 (566)
T ss_pred ceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCC--CCEEEEEEecccceE
Confidence 4477788876643333322 11110 0134445422 211222211 2234
Q ss_pred EEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECC---CcEEEEECCCCCccccccCCceeEeeeccccc
Q 000736 370 LVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSD---GCLCVVDLPAPDMLEDLEGTEFVVEACISETA 446 (1323)
Q Consensus 370 ~lt~l~~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~D---gti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~ 446 (1323)
.+.+++..+| +.+ -+++=+++-|+|.| ++|+.++-+ |.+.+||+.+..++.. +.
T Consensus 297 tifnlr~~~v------~df-~egpRN~~~fnp~g--~ii~lAGFGNL~G~mEvwDv~n~K~i~~-----~~--------- 353 (566)
T KOG2315|consen 297 TIFNLRGKPV------FDF-PEGPRNTAFFNPHG--NIILLAGFGNLPGDMEVWDVPNRKLIAK-----FK--------- 353 (566)
T ss_pred EEEcCCCCEe------EeC-CCCCccceEECCCC--CEEEEeecCCCCCceEEEeccchhhccc-----cc---------
Confidence 4445544322 111 13455889999999 888887654 8999999987444311 11
Q ss_pred cCcEEEEEEecCCeEEEEEecCC----CCeeEEEEee
Q 000736 447 FGSVIHLIWLGSHLLLSVSHHGP----RHSNYFRGAT 479 (1323)
Q Consensus 447 ~~~v~~l~~~~d~~lla~~~~~~----~~~~~~~~~~ 479 (1323)
.....-+.|+|||.++.++...+ .+.+.||++.
T Consensus 354 a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 354 AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 12345578999999998877642 2678899873
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.6e-07 Score=107.96 Aligned_cols=244 Identities=16% Similarity=0.153 Sum_probs=178.1
Q ss_pred HHHHHHHHhhccHHHHHHHHHhccChhH--HHHHHH-HhcCCcccchHhHHHHhcCCchhccccHHHHhcCHHHHHHHHH
Q 000736 879 EEALKHLLWLADSEAVYEAALGLYDLNL--AAIVAL-NSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIV 955 (1323)
Q Consensus 879 e~alk~l~~L~d~~~Ly~~ALg~yD~~l--al~VAq-~sqkDPkeYLpfL~~L~~l~~~~~~~~Id~~L~rye~Al~~l~ 955 (1323)
-++|++..-+-+.-..|+.|||.+.-.+ ...|.. -+|+|- -||+-.|.+.+...|++.|..|+|...+++.|..
T Consensus 864 ~e~lrrkf~Id~yl~~ye~ALghl~E~~n~~~Ev~~yi~~hdl---y~~~l~lyrYd~e~Qk~~~nifa~~l~~n~~~~~ 940 (1243)
T COG5290 864 LEALRRKFSIDNYLSIYESALGHLNEDLNVIREVMKYICRHDL---YDFLLLLYRYDGELQKFKINIFAGNLVDNLYHIS 940 (1243)
T ss_pred hHHHHhHhchhhhHHHHHHHHHhhHhHHHHHHHHHHHHHhccc---hHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhhHH
Confidence 4579999988999999999999998655 334433 345554 4677778888999999999999999888888877
Q ss_pred HcCC----CcHHHHHHHHHHHhcchHHHHhhc--CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhcCCHHHHHHHHHHh
Q 000736 956 SMGD----SYHADCLNLMKKYAQLFPLGLKLI--TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRAS 1029 (1323)
Q Consensus 956 ~~g~----~~~~~ale~~~~~~~ly~~AL~L~--~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~a 1029 (1323)
.+-. -..-||+..++.. .+|.+++.+. ..+.+ .+..|+-|.+ .+...+.++|+-+++...|..+
T Consensus 941 aa~aye~~gK~~Ea~gay~sA-~mwrec~si~~q~~~~e----~~~~AE~L~S-----~l~ve~R~~~da~~i~l~yl~N 1010 (1243)
T COG5290 941 AAKAYEVEGKYIEAHGAYDSA-LMWRECGSISTQEKGYE----FNLCAELLPS-----DLLVEFRKAGDAEKILLTYLEN 1010 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHhhhcchH----HHHHHHhhhh-----hHHHHHHHhcCHHHHHHHHHhC
Confidence 6521 1257777778777 8888888777 33333 5566666655 2555666677777777777777
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCCchhH
Q 000736 1030 GNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLI 1109 (1323)
Q Consensus 1030 g~W~~al~lA~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~e~Av~~~i~~~~w~eA~rla~~~~~~dLi 1109 (1323)
-.|..|+.+-. ..++ ...+..++..+.+.-++-+|..+-+.|++-+|.|.++|.+.+.--+++|++...+.
T Consensus 1011 ~~eava~~ckg-s~y~----ea~~~a~~s~~~e~~k~~~~~~LgE~Fg~~~El~ad~~~qikSq~~rlrvlr~kk~---- 1081 (1243)
T COG5290 1011 LYEAVAMDCKG-SEYR----EAFCEAMVSRLVESEKHYEAGQLGEEFGGKPELAADEYVQIKSQGDRLRVLRDKKC---- 1081 (1243)
T ss_pred HHHHHHHHccc-ccch----HHHHHHHHhhhhhHHHHhhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHhhhhh----
Confidence 76666654332 1222 24555666666666678889999999999999999999999999999998876553
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000736 1110 TKVKHASLECASSLIGEYKEGLEKVGKYLTRYLAVRQ 1146 (1323)
Q Consensus 1110 e~V~~~l~e~~~~~~e~l~e~~~~~~k~~~RL~~vR~ 1146 (1323)
..|..-+...+-.+.+.+....+.++..|+..+.+
T Consensus 1082 --e~p~a~~~~~~e~~t~dDvs~a~~~~st~~s~~t~ 1116 (1243)
T COG5290 1082 --EMPEAREILREELLTLDDVSEAFVKYSTRLSALTE 1116 (1243)
T ss_pred --cChHHHHhhhhhhcCccchhhhhhhhhhHHHHHHH
Confidence 23444444455566689999999999999887764
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.7e-05 Score=88.59 Aligned_cols=249 Identities=18% Similarity=0.206 Sum_probs=154.0
Q ss_pred ceeEEeeecCCCEEEEEeCC---CcEE--EEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEe-C
Q 000736 22 ILQFSALDIEQNRLFFASSA---NNIY--SAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT-S 95 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~---~~i~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as-~ 95 (1323)
.++.++|++++..||++..+ +.|. .||. ..+.. . +......++....-|+.+++|++|.+|. .
T Consensus 41 nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~--~~G~L----t-----~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~ 109 (346)
T COG2706 41 NPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDP--DDGRL----T-----FLNRQTLPGSPPCYVSVDEDGRFVFVANYH 109 (346)
T ss_pred CCceEEECCCCCEEEEEEecCCcCcEEEEEEcC--CCCeE----E-----EeeccccCCCCCeEEEECCCCCEEEEEEcc
Confidence 78999999999999999654 4454 5554 33332 2 2223344566779999999999998875 5
Q ss_pred CCcEEEEeCCC-CeEE-E--eceecCc----------EEEEEEcCCCCeEEEEe-CCccEEEEeecCceeeeeeecccCC
Q 000736 96 SGLLLLHSVDG-NATE-V--VGRVEGG----------VRFISPSPDGDLLGVTT-GFGQILVMTHDWDLLYENPLEELAE 160 (1323)
Q Consensus 96 dG~I~lw~~~~-~~~e-~--vg~~~~~----------I~~~awSPDG~~LA~~s-~d~tV~l~t~~~d~~~e~~l~~~~~ 160 (1323)
.|.|.++-++. +.+. . +-.|.++ +-++.+.|||++|++.. +...|.++.-+ | -.+....
T Consensus 110 ~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~-d----g~L~~~~- 183 (346)
T COG2706 110 SGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLD-D----GKLTPAD- 183 (346)
T ss_pred CceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcc-c----Ccccccc-
Confidence 68888887754 3321 1 1123444 88999999999999884 33356554322 1 1111110
Q ss_pred CceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCC--Cceee--e---ec---cCCCceeEEEE
Q 000736 161 GFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS--GTLQA--S---SE---LKAFMGAVLEW 230 (1323)
Q Consensus 161 ~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~--G~l~~--t---~e---~~~~~v~slaw 230 (1323)
+..+ ....+-..|.|+|+|++.=.+.- -+.+|-||..+. |++.. + +. ..+.+...|..
T Consensus 184 -----~~~v-~~G~GPRHi~FHpn~k~aY~v~E------L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi 251 (346)
T COG2706 184 -----PAEV-KPGAGPRHIVFHPNGKYAYLVNE------LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI 251 (346)
T ss_pred -----cccc-CCCCCcceEEEcCCCcEEEEEec------cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE
Confidence 0011 11134478999999996542332 247999998744 33211 1 11 12335688999
Q ss_pred ccCCCeEEEEecCCCCCCCCeEEEEe--CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeC
Q 000736 231 MPSGANIAAVYDRKSENKCPSIVFYE--RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1323)
Q Consensus 231 sPdG~lIAs~s~d~~~~~~~~V~~~e--~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n 306 (1323)
+|||++|.++-+. -..|..|. .+|.+..-......+...-....++|+|++|+++..++ +.|.++..+.
T Consensus 252 s~dGrFLYasNRg-----~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s--d~i~vf~~d~ 322 (346)
T COG2706 252 SPDGRFLYASNRG-----HDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKS--DNITVFERDK 322 (346)
T ss_pred CCCCCEEEEecCC-----CCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCC--CcEEEEEEcC
Confidence 9999999888664 23677775 34332221111111122356889999999999999876 3677877764
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.8e-05 Score=88.93 Aligned_cols=177 Identities=15% Similarity=0.136 Sum_probs=127.6
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCc-cEEEEeecCceeeeeeecccCCCcee
Q 000736 86 EKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFG-QILVMTHDWDLLYENPLEELAEGFDV 164 (1323)
Q Consensus 86 dg~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~-tV~l~t~~~d~~~e~~l~~~~~~~~V 164 (1323)
+|+.++..| -|...+.+...+-.--+|+ .++|.-..++-|++-++.|+.|| .+-+.+.+.-.+..+.
T Consensus 331 ~Gd~ia~VS-RGkaFi~~~~~~~~iqv~~-~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e---------- 398 (668)
T COG4946 331 NGDYIALVS-RGKAFIMRPWDGYSIQVGK-KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE---------- 398 (668)
T ss_pred CCcEEEEEe-cCcEEEECCCCCeeEEcCC-CCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee----------
Confidence 688999887 4777887776665555675 78899999999999999999998 6766654432221111
Q ss_pred ccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCC
Q 000736 165 HEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRK 244 (1323)
Q Consensus 165 s~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~ 244 (1323)
+.-+.|.++.-+|||++++ ++- ....+-+.|.++|...-.-....+++..++|+|++++||-+--.
T Consensus 399 ------~~lg~I~av~vs~dGK~~v-vaN------dr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~- 464 (668)
T COG4946 399 ------KDLGNIEAVKVSPDGKKVV-VAN------DRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPE- 464 (668)
T ss_pred ------CCccceEEEEEcCCCcEEE-EEc------CceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCc-
Confidence 1114678999999999988 662 24567777888998877766678899999999999999976321
Q ss_pred CCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEc
Q 000736 245 SENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVR 292 (1323)
Q Consensus 245 ~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~ 292 (1323)
+--.+.|++++..|.++-..+.+ .+.=.+-||.|||+.|-.-+.
T Consensus 465 -gy~tq~Iklydm~~~Kiy~vTT~---ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 465 -GYYTQSIKLYDMDGGKIYDVTTP---TAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred -ceeeeeEEEEecCCCeEEEecCC---cccccCcccCCCCcEEEEEec
Confidence 11135699999887666544433 223346789999998766543
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.6e-06 Score=107.80 Aligned_cols=206 Identities=11% Similarity=0.080 Sum_probs=123.6
Q ss_pred CCEEEEEEecCC-CEEEEEeCCCcEEEEeCCC-----C--eEEE-eceecCcEEEEEEcCCCCeEEEEeCCccEEEEeec
Q 000736 76 DSITAFDYLMEK-EALIVGTSSGLLLLHSVDG-----N--ATEV-VGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD 146 (1323)
Q Consensus 76 ~~V~~v~~spdg-~~La~as~dG~I~lw~~~~-----~--~~e~-vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~ 146 (1323)
..|..++-+++. ..+++||.||+|++||... + +.+. ..-..+.+.++..-+.|+.+|+++.||.|.++.-+
T Consensus 1049 ~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id 1128 (1431)
T KOG1240|consen 1049 SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRID 1128 (1431)
T ss_pred ccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcc
Confidence 456666666654 9999999999999999752 1 1121 11134668888888999999999999999887543
Q ss_pred Ccee----eeeeecccC--CCceeccCccccCCCCeEEEEEec-CCc-EEEEeeccccccCCCCEEEEEECCCCceeee-
Q 000736 147 WDLL----YENPLEELA--EGFDVHEPELSSSFSFKSPISWRG-DGK-YFATLSEFCNSSKLHKRLKVWERDSGTLQAS- 217 (1323)
Q Consensus 147 ~d~~----~e~~l~~~~--~~~~Vs~tqf~~~~~~i~~isWsp-DG~-~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t- 217 (1323)
-... .+.....+. ++..| ..-++.. ++. .++ .+ +..+.|-.||...-.-.++
T Consensus 1129 ~~~~~~~~~~~~ri~n~~~~g~vv------------~m~a~~~~~~S~~lv-y~------T~~~~iv~~D~r~~~~~w~l 1189 (1431)
T KOG1240|consen 1129 HYNVSKRVATQVRIPNLKKDGVVV------------SMHAFTAIVQSHVLV-YA------TDLSRIVSWDTRMRHDAWRL 1189 (1431)
T ss_pred ccccccceeeeeecccccCCCceE------------EeecccccccceeEE-EE------EeccceEEecchhhhhHHhh
Confidence 2100 011111111 11111 1222222 222 344 33 2347788999754433333
Q ss_pred -eccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEcc---CCCeeEEEEc
Q 000736 218 -SELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNC---MSDLLAAVVR 292 (1323)
Q Consensus 218 -~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSp---Dg~~LA~~~~ 292 (1323)
.++..|.+++++-+|-|++++.|.. ++.+.+||. -+.....+.. +....+..+.-.| .+....+++.
T Consensus 1190 k~~~~hG~vTSi~idp~~~WlviGts------~G~l~lWDLRF~~~i~sw~~--P~~~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1190 KNQLRHGLVTSIVIDPWCNWLVIGTS------RGQLVLWDLRFRVPILSWEH--PARAPIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred hcCccccceeEEEecCCceEEEEecC------CceEEEEEeecCceeecccC--cccCCcceEEeeccCCCCceEEEecc
Confidence 3456789999999999999999986 456999993 3333222222 2234555555444 4445555554
Q ss_pred cCCCCeEEEEEeeCCee
Q 000736 293 FEEYDSVKICFFSNNHW 309 (1323)
Q Consensus 293 d~~~~~V~LW~~~n~~w 309 (1323)
.+ .+-|-+|++.+.+.
T Consensus 1262 ~~-~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1262 SS-NNEVSTWNMETGLR 1277 (1431)
T ss_pred cC-CCceeeeecccCcc
Confidence 22 12599999988753
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.3e-06 Score=95.46 Aligned_cols=325 Identities=15% Similarity=0.100 Sum_probs=187.7
Q ss_pred EEeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe-ecCceeeeeeecccCCCceeccCccccCCCCeEE
Q 000736 101 LHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1323)
Q Consensus 101 lw~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~ 178 (1323)
.|+..+.... .+++..=.+..++|||-|.+|++.+..| |.+|. ..|+.+.... + ..+..
T Consensus 16 f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~-~-----------------~~V~~ 76 (561)
T COG5354 16 FWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR-H-----------------PDVKY 76 (561)
T ss_pred eecCccccccccccccCcchhheeecCcchheehhhccc-eEEccccchhheeeee-c-----------------CCcee
Confidence 3665554333 5554455689999999999999988874 77875 4455433322 1 24578
Q ss_pred EEEecCCcEEEEeecc---ccc----c-CCCCEEEEEECCCCceeeeeccCCCc--ee-EEEEccCCCeEEEEecCCCCC
Q 000736 179 ISWRGDGKYFATLSEF---CNS----S-KLHKRLKVWERDSGTLQASSELKAFM--GA-VLEWMPSGANIAAVYDRKSEN 247 (1323)
Q Consensus 179 isWspDG~~lAtvss~---d~~----~-~~d~~IrVWd~~~G~l~~t~e~~~~~--v~-slawsPdG~lIAs~s~d~~~~ 247 (1323)
+.|||.|+||.|=+.. +++ + +.+..+.|||..+|.+..++...... .+ -+-||-|-++.|=..
T Consensus 77 ~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv------ 150 (561)
T COG5354 77 LDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV------ 150 (561)
T ss_pred cccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc------
Confidence 9999999999843321 011 0 22346999999999999988765443 44 789999998887553
Q ss_pred CCCeEEEEeCCCee-EEEE-EeccCCCCcEEEEEEccC--CCeeEEEEccCC--CCeEEEEEeeCCeeEEEeEEEEecCC
Q 000736 248 KCPSIVFYERNGLE-RSSF-DINEQIDSTVELLKWNCM--SDLLAAVVRFEE--YDSVKICFFSNNHWYLKYEIRYLRRD 321 (1323)
Q Consensus 248 ~~~~V~~~e~nGl~-~~~f-~l~~~~~~~V~~laWSpD--g~~LA~~~~d~~--~~~V~LW~~~n~~wylkq~l~~~~~~ 321 (1323)
.+.+.+++..+.. .+.| .++ ...|...+|||- +..||.+.-... ...+++|.+.-..-...+. +-.-+
T Consensus 151 -~~sl~i~e~t~n~~~~p~~~lr---~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~--lfk~~ 224 (561)
T COG5354 151 -GSSLYIHEITDNIEEHPFKNLR---PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN--LFKVS 224 (561)
T ss_pred -cCeEEEEecCCccccCchhhcc---ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee--eEeec
Confidence 2468888853211 1111 111 246889999996 456888865442 2289999987332111111 11123
Q ss_pred cEEEEEccCCCcEEEEEec---CC-cEE------------------------EEEEEEeeeeCCCeeEEEEeCCEEEEee
Q 000736 322 GIRFMWHPTKPLQLICWTL---DG-QIT------------------------TYNFIWTTAVMENSTALVIDGSKILVTP 373 (1323)
Q Consensus 322 ~~~v~Wsp~~~~~L~~~~~---~g-~~~------------------------~~~~~~~~~~~d~~~v~viDg~~l~lt~ 373 (1323)
...+.|++.|...|...-. .+ .+. +.+|.|....+.-+++.-.-...+.+++
T Consensus 225 ~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~ 304 (561)
T COG5354 225 GVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFD 304 (561)
T ss_pred ccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecc
Confidence 4778899988764333211 11 110 1344454332222222222233445555
Q ss_pred cCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECC---CcEEEEECCCCCccccccCCceeEeeeccccccCcE
Q 000736 374 LSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSD---GCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSV 450 (1323)
Q Consensus 374 l~~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~D---gti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v 450 (1323)
+++.++ + ...+..=+.+.|||.+ +.+..++-| |.+.+|+..+. |.+...+ .....
T Consensus 305 lr~Nl~------~-~~Pe~~rNT~~fsp~~--r~il~agF~nl~gni~i~~~~~r----------f~~~~~~---~~~n~ 362 (561)
T COG5354 305 LRGNLR------F-YFPEQKRNTIFFSPHE--RYILFAGFDNLQGNIEIFDPAGR----------FKVAGAF---NGLNT 362 (561)
T ss_pred cccceE------E-ecCCcccccccccCcc--cEEEEecCCccccceEEeccCCc----------eEEEEEe---ecCCc
Confidence 544321 0 1112233567899998 777665554 78889987653 2222111 00123
Q ss_pred EEEEEecCCeEEEEEecCC----CCeeEEEEe
Q 000736 451 IHLIWLGSHLLLSVSHHGP----RHSNYFRGA 478 (1323)
Q Consensus 451 ~~l~~~~d~~lla~~~~~~----~~~~~~~~~ 478 (1323)
.-.-|+||++++-++..+. .+.+.+|.+
T Consensus 363 s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 363 SYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred eEeeccCCceEEEecCCCcccccCcceEEEEe
Confidence 4446999999987765422 256777776
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.4e-05 Score=86.09 Aligned_cols=231 Identities=14% Similarity=0.157 Sum_probs=144.6
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEeCCCC-eEEEeceecCc--EEEEEEcCCCCeEEEEeCCc-------cEEEEee-
Q 000736 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGN-ATEVVGRVEGG--VRFISPSPDGDLLGVTTGFG-------QILVMTH- 145 (1323)
Q Consensus 77 ~V~~v~~spdg~~La~as~dG~I~lw~~~~~-~~e~vg~~~~~--I~~~awSPDG~~LA~~s~d~-------tV~l~t~- 145 (1323)
...+++|..|..-+|+|.++| .++|+.+-- +......+++| |.-|=| -.++||.+++-+ .|.+|+.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEecc
Confidence 567799999999999999888 789998641 10011111222 222222 236788887643 6777751
Q ss_pred cCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECC-CCceeeeeccCCCc
Q 000736 146 DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAFM 224 (1323)
Q Consensus 146 ~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~-~G~l~~t~e~~~~~ 224 (1323)
...++.|..+. ..|..|..++|- ++.+- ..+|.||.-. +-+++...+....+
T Consensus 84 k~~~i~el~f~-----------------~~I~~V~l~r~r--iVvvl--------~~~I~VytF~~n~k~l~~~et~~NP 136 (346)
T KOG2111|consen 84 KERCIIELSFN-----------------SEIKAVKLRRDR--IVVVL--------ENKIYVYTFPDNPKLLHVIETRSNP 136 (346)
T ss_pred cCcEEEEEEec-----------------cceeeEEEcCCe--EEEEe--------cCeEEEEEcCCChhheeeeecccCC
Confidence 12233333332 456888888875 44132 3799999863 34455544433222
Q ss_pred eeEEEEccC--CCeEEEEecCCCCCCCCeEEEEeCCCeeEE-EEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEE
Q 000736 225 GAVLEWMPS--GANIAAVYDRKSENKCPSIVFYERNGLERS-SFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKI 301 (1323)
Q Consensus 225 v~slawsPd--G~lIAs~s~d~~~~~~~~V~~~e~nGl~~~-~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~L 301 (1323)
-.-.+..|. -.+||..+.. .+.|++-+.+-...+ .+.++.| +..|..++.+-+|+++|+++..|. .|+|
T Consensus 137 kGlC~~~~~~~k~~LafPg~k-----~GqvQi~dL~~~~~~~p~~I~AH-~s~Iacv~Ln~~Gt~vATaStkGT--LIRI 208 (346)
T KOG2111|consen 137 KGLCSLCPTSNKSLLAFPGFK-----TGQVQIVDLASTKPNAPSIINAH-DSDIACVALNLQGTLVATASTKGT--LIRI 208 (346)
T ss_pred CceEeecCCCCceEEEcCCCc-----cceEEEEEhhhcCcCCceEEEcc-cCceeEEEEcCCccEEEEeccCcE--EEEE
Confidence 223344443 4467777765 356777665433331 2334433 568999999999999999998773 6999
Q ss_pred EEeeCCeeEEEeEEEEecC--CcEEEEEccCCCcEEEEEecCCcEEEEE
Q 000736 302 CFFSNNHWYLKYEIRYLRR--DGIRFMWHPTKPLQLICWTLDGQITTYN 348 (1323)
Q Consensus 302 W~~~n~~wylkq~l~~~~~--~~~~v~Wsp~~~~~L~~~~~~g~~~~~~ 348 (1323)
||+.+.+ +.+|++-..+ +..+++|||+..+ |++.+..|++++..
T Consensus 209 Fdt~~g~--~l~E~RRG~d~A~iy~iaFSp~~s~-LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 209 FDTEDGT--LLQELRRGVDRADIYCIAFSPNSSW-LAVSSDKGTLHIFS 254 (346)
T ss_pred EEcCCCc--EeeeeecCCchheEEEEEeCCCccE-EEEEcCCCeEEEEE
Confidence 9999875 4567653222 2378999999876 78888788886543
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.6e-05 Score=84.67 Aligned_cols=218 Identities=18% Similarity=0.206 Sum_probs=136.0
Q ss_pred eEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEe-cCCCEEEEEeCCCcEEE
Q 000736 24 QFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYL-MEKEALIVGTSSGLLLL 101 (1323)
Q Consensus 24 ~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~s-pdg~~La~as~dG~I~l 101 (1323)
.+.+||++++.||++.- .+.|+.|++ .++.. .+ +.. ....++++. ++ ..|.++..+| +.+
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~--~~~~~--~~---------~~~---~~~~G~~~~~~~-g~l~v~~~~~-~~~ 64 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDP--DTGEV--EV---------IDL---PGPNGMAFDRPD-GRLYVADSGG-IAV 64 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEET--TTTEE--EE---------EES---SSEEEEEEECTT-SEEEEEETTC-EEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEEC--CCCeE--EE---------Eec---CCCceEEEEccC-CEEEEEEcCc-eEE
Confidence 57899998999999875 668999999 45442 11 111 238889999 66 4555555544 556
Q ss_pred EeCCCCeEEEece------ecCcEEEEEEcCCCCeEEEEeCC--------ccEEEEeecCceeeeeeecccCCCceeccC
Q 000736 102 HSVDGNATEVVGR------VEGGVRFISPSPDGDLLGVTTGF--------GQILVMTHDWDLLYENPLEELAEGFDVHEP 167 (1323)
Q Consensus 102 w~~~~~~~e~vg~------~~~~I~~~awSPDG~~LA~~s~d--------~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~t 167 (1323)
+|..+++++.+-. .....+.++++|||.+.++.+.. |.|..++.+... . ......
T Consensus 65 ~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~-~-~~~~~~--------- 133 (246)
T PF08450_consen 65 VDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKV-T-VVADGL--------- 133 (246)
T ss_dssp EETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEE-E-EEEEEE---------
T ss_pred EecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeE-E-EEecCc---------
Confidence 6988887652222 23458899999999988877654 335444333211 1 111100
Q ss_pred ccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECC-CCc-eee-----eeccCCCceeEEEEccCCCeEEEE
Q 000736 168 ELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGT-LQA-----SSELKAFMGAVLEWMPSGANIAAV 240 (1323)
Q Consensus 168 qf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~-~G~-l~~-----t~e~~~~~v~slawsPdG~lIAs~ 240 (1323)
.....|+|+|||+.|. ++. ...+.|..++.. ++. +.. ......+....+++.++|++.++.
T Consensus 134 ------~~pNGi~~s~dg~~ly-v~d-----s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~ 201 (246)
T PF08450_consen 134 ------GFPNGIAFSPDGKTLY-VAD-----SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVAD 201 (246)
T ss_dssp ------SSEEEEEEETTSSEEE-EEE-----TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEE
T ss_pred ------ccccceEECCcchhee-ecc-----cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEE
Confidence 1337899999999775 432 234678777763 222 221 122222335789999999977765
Q ss_pred ecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEE-ccCCCeeEEEE
Q 000736 241 YDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKW-NCMSDLLAAVV 291 (1323)
Q Consensus 241 s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laW-SpDg~~LA~~~ 291 (1323)
-. ...|..++.+|.....+.++. ..+.+++| .||.+.|-+.+
T Consensus 202 ~~------~~~I~~~~p~G~~~~~i~~p~---~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 202 WG------GGRIVVFDPDGKLLREIELPV---PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp ET------TTEEEEEETTSCEEEEEE-SS---SSEEEEEEESTTSSEEEEEE
T ss_pred cC------CCEEEEECCCccEEEEEcCCC---CCEEEEEEECCCCCEEEEEe
Confidence 43 357999999998877666652 36899999 58878777655
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.7e-05 Score=85.12 Aligned_cols=202 Identities=13% Similarity=0.094 Sum_probs=127.8
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEeCCC---------CeEEEe--ceecCcEEEEEEcCCCCeEEEEeCCccEEEEeec
Q 000736 78 ITAFDYLMEKEALIVGTSSGLLLLHSVDG---------NATEVV--GRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD 146 (1323)
Q Consensus 78 V~~v~~spdg~~La~as~dG~I~lw~~~~---------~~~e~v--g~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~ 146 (1323)
|.+=+|+|-+++|+.|+.+|+|.+.++.. ++..++ ..|++.|..++|- | ..|.+ ++||.|+-|-
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~-d-~~Lls-~gdG~V~gw~-- 87 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH-D-DFLLS-GGDGLVYGWE-- 87 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee-h-hheee-ccCceEEEee--
Confidence 45567899999999999999999998753 233333 3579999999998 3 34444 4669998763
Q ss_pred Cceeee-eeecccCC---CceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCC
Q 000736 147 WDLLYE-NPLEELAE---GFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA 222 (1323)
Q Consensus 147 ~d~~~e-~~l~~~~~---~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~ 222 (1323)
|.-..+ ...+...+ ..++.. ..=..|..+.--|...-+. .+ ++|+.+.-||.++|+...++.+|.
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~----~evPeINam~ldP~enSi~-~A------gGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDA----VEVPEINAMWLDPSENSIL-FA------GGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCc----ccCCccceeEeccCCCcEE-Ee------cCCeEEEEEEecCCEEEEEEcCCc
Confidence 322211 00000000 000000 0002456666666554333 22 357999999999999999999999
Q ss_pred CceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec--------cCC-CCcEEEEEEccCCCeeEEEEcc
Q 000736 223 FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN--------EQI-DSTVELLKWNCMSDLLAAVVRF 293 (1323)
Q Consensus 223 ~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~--------~~~-~~~V~~laWSpDg~~LA~~~~d 293 (1323)
..++++.-+.....|.||+.| .+|++|+....++-. .+. .|+ ..+|.+++ -|...|+.|...
T Consensus 157 DYvH~vv~R~~~~qilsG~ED------GtvRvWd~kt~k~v~-~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp 227 (325)
T KOG0649|consen 157 DYVHSVVGRNANGQILSGAED------GTVRVWDTKTQKHVS-MIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGP 227 (325)
T ss_pred ceeeeeeecccCcceeecCCC------ccEEEEeccccceeE-EeccccChhhcCcccCceeEEEe--ccCceEEecCCC
Confidence 999999996666678888886 469999953333322 111 111 23455555 455677777655
Q ss_pred CCCCeEEEEEeeCCe
Q 000736 294 EEYDSVKICFFSNNH 308 (1323)
Q Consensus 294 ~~~~~V~LW~~~n~~ 308 (1323)
. +-||++....
T Consensus 228 ~----lslwhLrsse 238 (325)
T KOG0649|consen 228 K----LSLWHLRSSE 238 (325)
T ss_pred c----eeEEeccCCC
Confidence 4 8899886543
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.7e-06 Score=98.66 Aligned_cols=131 Identities=15% Similarity=0.154 Sum_probs=106.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEE---EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEee-cCceeeeeeecccCCC
Q 000736 86 EKEALIVGTSSGLLLLHSVDGNATE---VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEG 161 (1323)
Q Consensus 86 dg~~La~as~dG~I~lw~~~~~~~e---~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~-~~d~~~e~~l~~~~~~ 161 (1323)
|...|+.|+..|.|.+|+..++++. ..|.|.++|+++.|+.+-..|=++++|..+..|.- +...+...
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~-------- 140 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIW-------- 140 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeee--------
Confidence 5578999999999999999988774 44788999999999999999999999999988752 22222111
Q ss_pred ceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccC-----CCe
Q 000736 162 FDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS-----GAN 236 (1323)
Q Consensus 162 ~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPd-----G~l 236 (1323)
+.....+.++..+|||+.++ +++ ++|++||.++++...++++|.++|++++|--+ |.+
T Consensus 141 --------~~~~~~~~sl~is~D~~~l~-~as--------~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~ 203 (541)
T KOG4547|consen 141 --------KEQKPLVSSLCISPDGKILL-TAS--------RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKY 203 (541)
T ss_pred --------ccCCCccceEEEcCCCCEEE-ecc--------ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccce
Confidence 12223568899999999999 664 89999999999999999999999999999888 776
Q ss_pred EEEEe
Q 000736 237 IAAVY 241 (1323)
Q Consensus 237 IAs~s 241 (1323)
+-++.
T Consensus 204 vLssa 208 (541)
T KOG4547|consen 204 VLSSA 208 (541)
T ss_pred eeecc
Confidence 65553
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=5e-07 Score=106.30 Aligned_cols=185 Identities=19% Similarity=0.250 Sum_probs=136.2
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCC-CCCEEEEEEecCCCEEEEEeCCCcEE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEP-GDSITAFDYLMEKEALIVGTSSGLLL 100 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~V~~v~~spdg~~La~as~dG~I~ 100 (1323)
.+-.++++.-+.-||++.....+|..++ .++.. |.. |.. .+.++.|...+.-..||+|+.+|.|-
T Consensus 135 ~GRDm~y~~~scDly~~gsg~evYRlNL--EqGrf----------L~P--~~~~~~~lN~v~in~~hgLla~Gt~~g~VE 200 (703)
T KOG2321|consen 135 FGRDMKYHKPSCDLYLVGSGSEVYRLNL--EQGRF----------LNP--FETDSGELNVVSINEEHGLLACGTEDGVVE 200 (703)
T ss_pred CCccccccCCCccEEEeecCcceEEEEc--ccccc----------ccc--cccccccceeeeecCccceEEecccCceEE
Confidence 4567888888888999877777999999 56653 111 111 46899999999999999999999999
Q ss_pred EEeCCCC----eEEE---eceecCc-----EEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCc
Q 000736 101 LHSVDGN----ATEV---VGRVEGG-----VRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPE 168 (1323)
Q Consensus 101 lw~~~~~----~~e~---vg~~~~~-----I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tq 168 (1323)
.||..+. .++. |.++.++ |++++|+-||=.+|+|+.+|.|.+.+ .-+..++-..++.
T Consensus 201 fwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyD----LRa~~pl~~kdh~------- 269 (703)
T KOG2321|consen 201 FWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYD----LRASKPLLVKDHG------- 269 (703)
T ss_pred EecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEE----cccCCceeecccC-------
Confidence 9999763 3332 3334444 99999999999999999999998864 3333332222111
Q ss_pred cccCCCCeEEEEEecC--CcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecC
Q 000736 169 LSSSFSFKSPISWRGD--GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDR 243 (1323)
Q Consensus 169 f~~~~~~i~~isWspD--G~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d 243 (1323)
..-.|..+.|-+. +..++ + .| .+.+||||..+|+.....|+... +..+++=|++-++-++...
T Consensus 270 ---~e~pi~~l~~~~~~~q~~v~--S-~D-----k~~~kiWd~~~Gk~~asiEpt~~-lND~C~~p~sGm~f~Ane~ 334 (703)
T KOG2321|consen 270 ---YELPIKKLDWQDTDQQNKVV--S-MD-----KRILKIWDECTGKPMASIEPTSD-LNDFCFVPGSGMFFTANES 334 (703)
T ss_pred ---CccceeeecccccCCCceEE--e-cc-----hHHhhhcccccCCceeeccccCC-cCceeeecCCceEEEecCC
Confidence 1235788999554 44555 2 22 37999999999999998887666 6899999999888887653
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.6e-05 Score=82.71 Aligned_cols=257 Identities=14% Similarity=0.146 Sum_probs=152.7
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCC-CCCEEEEEEecCCCEEEEEeCCCcEE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEP-GDSITAFDYLMEKEALIVGTSSGLLL 100 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~V~~v~~spdg~~La~as~dG~I~ 100 (1323)
++..-+|.+-+..++.++.++.|....+++.-....-.-.+ +.-.++.. .+.|.+++|. ...|.+++ ||.|+
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk----~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~ 84 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGK----LKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVY 84 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCC----cceeeccccCCCeeeeeee--hhheeecc-CceEE
Confidence 34445667777778888888888877775211110000001 11111111 4689999998 34566654 69999
Q ss_pred EEeCCC-------Ce-EE-----Eeceec-CcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceecc
Q 000736 101 LHSVDG-------NA-TE-----VVGRVE-GGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHE 166 (1323)
Q Consensus 101 lw~~~~-------~~-~e-----~vg~~~-~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~ 166 (1323)
=|.-+. ++ ++ -++..+ ..|++|..-|....|.++++|+.+.-|+-. .+..-
T Consensus 85 gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE----~G~i~----------- 149 (325)
T KOG0649|consen 85 GWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLE----DGRIQ----------- 149 (325)
T ss_pred EeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEec----CCEEE-----------
Confidence 876432 11 11 222222 359999999999999999999999776532 21111
Q ss_pred CccccCCCCeEEEEE-ecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCC----------ceeEEEEccCCC
Q 000736 167 PELSSSFSFKSPISW-RGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF----------MGAVLEWMPSGA 235 (1323)
Q Consensus 167 tqf~~~~~~i~~isW-spDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~----------~v~slawsPdG~ 235 (1323)
..|++|++.+.++.= +..|+.|. + .+|+++||||..+++..++.++... ++.+++- +..
T Consensus 150 r~~rGHtDYvH~vv~R~~~~qils--G------~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~ed 219 (325)
T KOG0649|consen 150 REYRGHTDYVHSVVGRNANGQILS--G------AEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NED 219 (325)
T ss_pred EEEcCCcceeeeeeecccCcceee--c------CCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCc
Confidence 124478888888887 55666653 4 3579999999999999998775432 3344432 334
Q ss_pred eEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeE
Q 000736 236 NIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYE 314 (1323)
Q Consensus 236 lIAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~ 314 (1323)
++.+|+. ..+.+|.. .-.....|.++ +.|..+.|-.| .+|+.| ... .|+-|+.+. .++..
T Consensus 220 WlvCGgG-------p~lslwhLrsse~t~vfpip----a~v~~v~F~~d-~vl~~G-~g~---~v~~~~l~G---vl~a~ 280 (325)
T KOG0649|consen 220 WLVCGGG-------PKLSLWHLRSSESTCVFPIP----ARVHLVDFVDD-CVLIGG-EGN---HVQSYTLNG---VLQAN 280 (325)
T ss_pred eEEecCC-------CceeEEeccCCCceEEEecc----cceeEeeeecc-eEEEec-ccc---ceeeeeecc---EEEEe
Confidence 6666653 45888983 22233445443 35777877544 344443 322 699999876 24444
Q ss_pred EEEecCCcEEEEEcc
Q 000736 315 IRYLRRDGIRFMWHP 329 (1323)
Q Consensus 315 l~~~~~~~~~v~Wsp 329 (1323)
+.+....-.+..|+.
T Consensus 281 ip~~s~~c~s~s~~~ 295 (325)
T KOG0649|consen 281 IPVESTACYSASWQT 295 (325)
T ss_pred ccCCccceeeecccC
Confidence 444322225556654
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=9e-07 Score=110.82 Aligned_cols=197 Identities=16% Similarity=0.159 Sum_probs=149.4
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeE-EEeceecC----cEEEEEEcCCCCeEEEEeCCccEEEEeecCce
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEG----GVRFISPSPDGDLLGVTTGFGQILVMTHDWDL 149 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~-e~vg~~~~----~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~ 149 (1323)
.+.|..-.++-+...+++++.+..+.+|+...+.+ ..+++.+. ...-+-+|++.=++++|+--+.|++|....+
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d- 165 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED- 165 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc-
Confidence 35666677777889999999999999999876432 11221111 1223456888889999999999999743211
Q ss_pred eeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceee-eeccCCCceeEE
Q 000736 150 LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA-SSELKAFMGAVL 228 (1323)
Q Consensus 150 ~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~-t~e~~~~~v~sl 228 (1323)
. +++ ...+|.+.+.++.||-||.++|++| .||++|+|+.++++... +.=+|+..++.+
T Consensus 166 --n---------~p~---~l~GHeG~iF~i~~s~dg~~i~s~S-------dDRsiRlW~i~s~~~~~~~~fgHsaRvw~~ 224 (967)
T KOG0974|consen 166 --N---------KPI---RLKGHEGSIFSIVTSLDGRYIASVS-------DDRSIRLWPIDSREVLGCTGFGHSARVWAC 224 (967)
T ss_pred --C---------Ccc---eecccCCceEEEEEccCCcEEEEEe-------cCcceeeeecccccccCcccccccceeEEE
Confidence 1 111 1237889999999999999999654 37999999998887776 566799999999
Q ss_pred EEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeC
Q 000736 229 EWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1323)
Q Consensus 229 awsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n 306 (1323)
.|.|+ .|++++.| -+.++|.-||.....| .++....++.++-.++.-++.+++.|+ ++++|+..+
T Consensus 225 ~~~~n--~i~t~ged------ctcrvW~~~~~~l~~y--~~h~g~~iw~~~~~~~~~~~vT~g~Ds---~lk~~~l~~ 289 (967)
T KOG0974|consen 225 CFLPN--RIITVGED------CTCRVWGVNGTQLEVY--DEHSGKGIWKIAVPIGVIIKVTGGNDS---TLKLWDLNG 289 (967)
T ss_pred Eeccc--eeEEeccc------eEEEEEecccceehhh--hhhhhcceeEEEEcCCceEEEeeccCc---chhhhhhhc
Confidence 99999 89999986 4688999888765533 333345699999999999999999999 899999764
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00012 Score=86.30 Aligned_cols=277 Identities=12% Similarity=0.082 Sum_probs=145.0
Q ss_pred CcEEEEeCCCCeEE---EeceecCcEEEEEEcCCCCeEEEEeC----------CccEEEEe-ecCceeeeeeecccCCCc
Q 000736 97 GLLLLHSVDGNATE---VVGRVEGGVRFISPSPDGDLLGVTTG----------FGQILVMT-HDWDLLYENPLEELAEGF 162 (1323)
Q Consensus 97 G~I~lw~~~~~~~e---~vg~~~~~I~~~awSPDG~~LA~~s~----------d~tV~l~t-~~~d~~~e~~l~~~~~~~ 162 (1323)
|+|.+.|.++.++. -+|.... .+ +||||+.|.++.. ++.|.+|+ .+..++.++.+...++.+
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~---~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN---PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc---ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence 78999999886542 2332122 23 9999999998866 67888886 567777777765432100
Q ss_pred eeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEE--------ccCC
Q 000736 163 DVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEW--------MPSG 234 (1323)
Q Consensus 163 ~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slaw--------sPdG 234 (1323)
+ ......++.+|||+++. ++..+ .+..|-|.|..+++....-.-.+ ...-..+ ++||
T Consensus 103 -~--------~~~~~~~~ls~dgk~l~-V~n~~----p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~~~~~Dg 167 (352)
T TIGR02658 103 -V--------GTYPWMTSLTPDNKTLL-FYQFS----PSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFFMHCRDG 167 (352)
T ss_pred -c--------cCccceEEECCCCCEEE-EecCC----CCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccEEEeecC
Confidence 0 01235789999999888 66543 25899999998888877654222 2222333 3444
Q ss_pred CeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEcc-CCCeeEEEEccCCCCeEEEEEeeCCeeEEEe
Q 000736 235 ANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNC-MSDLLAAVVRFEEYDSVKICFFSNNHWYLKY 313 (1323)
Q Consensus 235 ~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSp-Dg~~LA~~~~d~~~~~V~LW~~~n~~wylkq 313 (1323)
.++-...++.+......+.+|+.+- .+. .... .+++ ||+.+-+... + +|.+-|+++..--...
T Consensus 168 ~~~~v~~d~~g~~~~~~~~vf~~~~-------~~v-~~rP----~~~~~dg~~~~vs~e-G---~V~~id~~~~~~~~~~ 231 (352)
T TIGR02658 168 SLAKVGYGTKGNPKIKPTEVFHPED-------EYL-INHP----AYSNKSGRLVWPTYT-G---KIFQIDLSSGDAKFLP 231 (352)
T ss_pred ceEEEEecCCCceEEeeeeeecCCc-------ccc-ccCC----ceEcCCCcEEEEecC-C---eEEEEecCCCcceecc
Confidence 4433332221100000011111000 000 0111 3455 8888877766 5 7888885432110011
Q ss_pred EEEEecCCcEEEEEccCCCcEEEEEecCCcEEEE-E---EEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeec
Q 000736 314 EIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTY-N---FIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLK 389 (1323)
Q Consensus 314 ~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~-~---~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~ 389 (1323)
.+.........=.|.|.+.+. ...+.+|..... . -.|+ ...+...++++|..+-++ ...+.
T Consensus 232 ~~~~~~~~~~~~~wrP~g~q~-ia~~~dg~~lyV~~~~~~~~t-hk~~~~~V~ViD~~t~kv-------------i~~i~ 296 (352)
T TIGR02658 232 AIEAFTEAEKADGWRPGGWQQ-VAYHRARDRIYLLADQRAKWT-HKTASRFLFVVDAKTGKR-------------LRKIE 296 (352)
T ss_pred eeeeccccccccccCCCccee-EEEcCCCCEEEEEecCCcccc-ccCCCCEEEEEECCCCeE-------------EEEEe
Confidence 111100000001244444322 222222221100 0 0011 012234677777654322 22444
Q ss_pred CCCCEEEEEEecCCCCC-EEEEEE-CCCcEEEEECCCC
Q 000736 390 FPTAVTEMAFYSKSSKN-CLAAIL-SDGCLCVVDLPAP 425 (1323)
Q Consensus 390 ~~~~V~~VaFSpdg~~~-~LAs~s-~Dgti~lw~~~~~ 425 (1323)
....++.|+||||| + .|.+.. .+++|.+.|..+.
T Consensus 297 vG~~~~~iavS~Dg--kp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 297 LGHEIDSINVSQDA--KPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred CCCceeeEEECCCC--CeEEEEeCCCCCcEEEEECcCC
Confidence 56688999999999 7 666665 5789999998764
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.9e-05 Score=90.67 Aligned_cols=193 Identities=12% Similarity=0.120 Sum_probs=102.3
Q ss_pred ecCCCEEEEE---------eCCCcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeee
Q 000736 84 LMEKEALIVG---------TSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1323)
Q Consensus 84 spdg~~La~a---------s~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~ 154 (1323)
|||++.++++ +..+++.+||+.++++..+......+..+.|||||+.||.+.+ +.|.+++.... .+..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~-~nly~~~~~~~--~~~~ 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRD-NNLYLRDLATG--QETQ 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEET-TEEEEESSTTS--EEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEec-CceEEEECCCC--CeEE
Confidence 6888888874 3457899999999888765554577899999999999999976 46777643222 2233
Q ss_pred ecccCCCceec---------cCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCC--
Q 000736 155 LEELAEGFDVH---------EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF-- 223 (1323)
Q Consensus 155 l~~~~~~~~Vs---------~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~-- 223 (1323)
+..+. ...|. |..| +.-..+-|||||++||+ ...| ++.|+.+.. .. ..+..+
T Consensus 78 lT~dg-~~~i~nG~~dwvyeEEv~----~~~~~~~WSpd~~~la~-~~~d-----~~~v~~~~~-----~~-~~~~~~~y 140 (353)
T PF00930_consen 78 LTTDG-EPGIYNGVPDWVYEEEVF----DRRSAVWWSPDSKYLAF-LRFD-----EREVPEYPL-----PD-YSPPDSQY 140 (353)
T ss_dssp SES---TTTEEESB--HHHHHHTS----SSSBSEEE-TTSSEEEE-EEEE------TTS-EEEE-----EE-ESSSTESS
T ss_pred ecccc-ceeEEcCccceecccccc----ccccceEECCCCCEEEE-EEEC-----CcCCceEEe-----ec-cCCccccC
Confidence 33222 01110 1112 12357999999999994 4443 233443322 00 000000
Q ss_pred -ceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec---cCCCCcEEEEEEccCCCeeEEEEccCCCC--
Q 000736 224 -MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN---EQIDSTVELLKWNCMSDLLAAVVRFEEYD-- 297 (1323)
Q Consensus 224 -~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~---~~~~~~V~~laWSpDg~~LA~~~~d~~~~-- 297 (1323)
.+..+.+---|.-.+ ...+.+++..+....+..++ ...+.-+..+.|++|++.|++...++..+
T Consensus 141 p~~~~~~YPk~G~~np----------~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~ 210 (353)
T PF00930_consen 141 PEVESIRYPKAGDPNP----------RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRL 210 (353)
T ss_dssp -EEEEEE--BTTS-------------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEE
T ss_pred CcccccccCCCCCcCC----------ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEE
Confidence 123333322233221 12355577655444343333 22345688999999999555554444344
Q ss_pred eEEEEEeeC
Q 000736 298 SVKICFFSN 306 (1323)
Q Consensus 298 ~V~LW~~~n 306 (1323)
.+.+++..+
T Consensus 211 ~l~~~d~~t 219 (353)
T PF00930_consen 211 DLVLCDAST 219 (353)
T ss_dssp EEEEEEECT
T ss_pred EEEEEECCC
Confidence 455556544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.4e-07 Score=109.55 Aligned_cols=266 Identities=12% Similarity=0.125 Sum_probs=166.9
Q ss_pred EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEE
Q 000736 111 VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFAT 190 (1323)
Q Consensus 111 ~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAt 190 (1323)
+.| |-..|.|+.|.--|..+.+++.|..|++|+.. ++.++.+.. ||.+.+..++-+...-++|
T Consensus 186 Llg-H~naVyca~fDrtg~~Iitgsdd~lvKiwS~e----t~~~lAs~r-----------Ghs~ditdlavs~~n~~ia- 248 (1113)
T KOG0644|consen 186 LLG-HRNAVYCAIFDRTGRYIITGSDDRLVKIWSME----TARCLASCR-----------GHSGDITDLAVSSNNTMIA- 248 (1113)
T ss_pred HHh-hhhheeeeeeccccceEeecCccceeeeeecc----chhhhccCC-----------CCccccchhccchhhhhhh-
Confidence 355 46789999999999999999999999998732 233333322 6677788888888888888
Q ss_pred eeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec--
Q 000736 191 LSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN-- 268 (1323)
Q Consensus 191 vss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~-- 268 (1323)
.+|. |..||||-..+|.+++.+.+|.|.|++|+|||-- ++++| .++.+|+.. +....|.-+
T Consensus 249 aaS~------D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~d------gt~~~wd~r-~~~~~y~prp~ 311 (1113)
T KOG0644|consen 249 AASN------DKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDD------GTCRIWDAR-LEPRIYVPRPL 311 (1113)
T ss_pred hccc------CceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCC------CceEecccc-ccccccCCCCC
Confidence 5543 5899999998999999999999999999999965 55664 469999854 222222111
Q ss_pred -cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecC-------------CcEEEEEccCCCcE
Q 000736 269 -EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRR-------------DGIRFMWHPTKPLQ 334 (1323)
Q Consensus 269 -~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~-------------~~~~v~Wsp~~~~~ 334 (1323)
......+.++.|-..|.-.++++.|+ .-+.|...-..|.-. -+.|... ......|.--....
T Consensus 312 ~~~~~~~~~s~~~~~~~~~f~Tgs~d~---ea~n~e~~~l~~~~~-~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l 387 (1113)
T KOG0644|consen 312 KFTEKDLVDSILFENNGDRFLTGSRDG---EARNHEFEQLAWRSN-LLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQL 387 (1113)
T ss_pred CcccccceeeeeccccccccccccCCc---ccccchhhHhhhhcc-ceEEEeccccccccceeeeeeeEeeeeecccchh
Confidence 11124577888888888888888887 455555432222100 0111110 00223333322222
Q ss_pred EEEEecCCcEEEEEEEEeeeeCCCe--eEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEE
Q 000736 335 LICWTLDGQITTYNFIWTTAVMENS--TALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAIL 412 (1323)
Q Consensus 335 L~~~~~~g~~~~~~~~~~~~~~d~~--~v~viDg~~l~lt~l~~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s 412 (1323)
+|+.. | ...+.++-++.|-+.. +-+--||+++ +|++-.+ .||-.+.+.| ..+.+-.||+|| +.++...
T Consensus 388 ~H~l~--g-hsd~~yvLd~Hpfn~ri~msag~dgst~-iwdi~eg---~pik~y~~gh-~kl~d~kFSqdg--ts~~lsd 457 (1113)
T KOG0644|consen 388 LHNLM--G-HSDEVYVLDVHPFNPRIAMSAGYDGSTI-IWDIWEG---IPIKHYFIGH-GKLVDGKFSQDG--TSIALSD 457 (1113)
T ss_pred hhhhc--c-cccceeeeeecCCCcHhhhhccCCCceE-eeecccC---Ccceeeeccc-ceeeccccCCCC--ceEecCC
Confidence 22221 1 1112233333332322 2233466654 5665432 3676666664 345677899999 8888888
Q ss_pred CCCcEEEEECCC
Q 000736 413 SDGCLCVVDLPA 424 (1323)
Q Consensus 413 ~Dgti~lw~~~~ 424 (1323)
.-|.+.|.....
T Consensus 458 ~hgql~i~g~gq 469 (1113)
T KOG0644|consen 458 DHGQLYILGTGQ 469 (1113)
T ss_pred CCCceEEeccCC
Confidence 888888877643
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.2e-05 Score=90.18 Aligned_cols=269 Identities=14% Similarity=0.164 Sum_probs=156.0
Q ss_pred eEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEe---------
Q 000736 24 QFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT--------- 94 (1323)
Q Consensus 24 ~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as--------- 94 (1323)
+.+-|.|-|--|++.-.-+ |..|--. +.. ++. -| +...|.-+.|||.-++|++=+
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~--~f~---r~~---------RF-~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~ 277 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGE--SFD---RIQ---------RF-YHPGVQFIDFSPNEKYLVTYSPEPIIVEED 277 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCc--cHH---HHH---------hc-cCCCceeeecCCccceEEEecCCccccCcc
Confidence 4455666666555555554 6666541 111 011 11 135789999999999998754
Q ss_pred --CCCcEEEEeCCCCeEE-Eecee--cCcEE-EEEEcCCCCeEEEEeCCccEEEE-eecCceeeeeeecccCCCceeccC
Q 000736 95 --SSGLLLLHSVDGNATE-VVGRV--EGGVR-FISPSPDGDLLGVTTGFGQILVM-THDWDLLYENPLEELAEGFDVHEP 167 (1323)
Q Consensus 95 --~dG~I~lw~~~~~~~e-~vg~~--~~~I~-~~awSPDG~~LA~~s~d~tV~l~-t~~~d~~~e~~l~~~~~~~~Vs~t 167 (1323)
+...++|||+.+|.+. .+..+ ...++ -..||.|++++|-.++++ |.+. +..+.++-..++..
T Consensus 278 d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~s-isIyEtpsf~lld~Kslki---------- 346 (698)
T KOG2314|consen 278 DNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNS-ISIYETPSFMLLDKKSLKI---------- 346 (698)
T ss_pred cCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccce-EEEEecCceeeecccccCC----------
Confidence 3356899999997653 22111 12233 478999999999999974 5443 23333333333222
Q ss_pred ccccCCCCeEEEEEecCCcEEEEeeccccc-cCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCC
Q 000736 168 ELSSSFSFKSPISWRGDGKYFATLSEFCNS-SKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSE 246 (1323)
Q Consensus 168 qf~~~~~~i~~isWspDG~~lAtvss~d~~-~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~ 246 (1323)
++|...+|+|-++.||. +.++ .....++-+-..-+++.+.+-.-+.=.-..+-|..+|.+|+.--+.-+.
T Consensus 347 ------~gIr~FswsP~~~llAY---wtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK 417 (698)
T KOG2314|consen 347 ------SGIRDFSWSPTSNLLAY---WTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTK 417 (698)
T ss_pred ------ccccCcccCCCcceEEE---EcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeecc
Confidence 46788999999999883 2222 1122455555554555554422222112568899999999876543221
Q ss_pred CC-CC---eEEEEeCCCeeEEEEEec-cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee-CC-eeEEEeEEEEec
Q 000736 247 NK-CP---SIVFYERNGLERSSFDIN-EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS-NN-HWYLKYEIRYLR 319 (1323)
Q Consensus 247 ~~-~~---~V~~~e~nGl~~~~f~l~-~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~-n~-~wylkq~l~~~~ 319 (1323)
.. +. .+-+|... ..+..+. .+....|...+|-|.|..+|+-+......+|+++... |. .|.|..++ ..
T Consensus 418 ~~~~g~f~n~eIfrir---eKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~--dk 492 (698)
T KOG2314|consen 418 SKVKGQFSNLEIFRIR---EKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL--DK 492 (698)
T ss_pred ccccceEeeEEEEEee---ccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh--cc
Confidence 11 11 12222210 0110000 1123468999999999999998877666689999987 33 33332222 22
Q ss_pred CCcEEEEEccCCCc
Q 000736 320 RDGIRFMWHPTKPL 333 (1323)
Q Consensus 320 ~~~~~v~Wsp~~~~ 333 (1323)
.....+.|+|.|..
T Consensus 493 ~~~N~vfwsPkG~f 506 (698)
T KOG2314|consen 493 KFANTVFWSPKGRF 506 (698)
T ss_pred cccceEEEcCCCcE
Confidence 22378999999876
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.50 E-value=5e-07 Score=104.10 Aligned_cols=196 Identities=15% Similarity=0.013 Sum_probs=151.2
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeee
Q 000736 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPL 155 (1323)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l 155 (1323)
-....+.|+.+|+.|++|+..|-|..+|..++.+.+--.+...|..+.|=...+++|++-.. -+.+++..+.-+..+.-
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~-y~yvYD~~GtElHClk~ 208 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKK-YVYVYDNNGTELHCLKR 208 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhc-eEEEecCCCcEEeehhh
Confidence 46789999999999999999999999999987765433456679999999999999988664 56676665544433221
Q ss_pred cccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCC
Q 000736 156 EELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA 235 (1323)
Q Consensus 156 ~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~ 235 (1323)
+ ..+..+.|=|---+|| .++ ..+-++--|..+|++.+.+....|.+..++=+|-..
T Consensus 209 ~-----------------~~v~rLeFLPyHfLL~-~~~------~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na 264 (545)
T KOG1272|consen 209 H-----------------IRVARLEFLPYHFLLV-AAS------EAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA 264 (545)
T ss_pred c-----------------Cchhhhcccchhheee-ecc------cCCceEEEeechhhhhHHHHccCCccchhhcCCccc
Confidence 1 3567788888777777 332 247788889989999998877788888899999988
Q ss_pred eEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec-cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCe
Q 000736 236 NIAAVYDRKSENKCPSIVFYERNGLERSSFDIN-EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1323)
Q Consensus 236 lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~-~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~ 308 (1323)
.|-.|.. +++|.+|.+|-. +.-.. .-+.+.|.+|++.++|.++|+++.|. .|+|||+.++.
T Consensus 265 Vih~Ghs------nGtVSlWSP~sk---ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr---~~kIWDlR~~~ 326 (545)
T KOG1272|consen 265 VIHLGHS------NGTVSLWSPNSK---EPLVKILCHRGPVSSIAVDRGGRYMATTGLDR---KVKIWDLRNFY 326 (545)
T ss_pred eEEEcCC------CceEEecCCCCc---chHHHHHhcCCCcceEEECCCCcEEeeccccc---ceeEeeecccc
Confidence 8887765 467999998742 11011 12456899999999999999999999 89999999863
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.48 E-value=7e-05 Score=83.11 Aligned_cols=145 Identities=16% Similarity=0.156 Sum_probs=79.6
Q ss_pred EEEcCCCCeEEEEeCCccEEEEe--ecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccC
Q 000736 122 ISPSPDGDLLGVTTGFGQILVMT--HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSK 199 (1323)
Q Consensus 122 ~awSPDG~~LA~~s~d~tV~l~t--~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~ 199 (1323)
++-++||++||+... ..|.+=+ .+|..+.+.+-.+.+ . ..| =..++|||||.+|| .+.
T Consensus 3 ~~~~~~Gk~lAi~qd-~~iEiRsa~Ddf~si~~kcqVpkD-~----~PQ-------WRkl~WSpD~tlLa-~a~------ 62 (282)
T PF15492_consen 3 LALSSDGKLLAILQD-QCIEIRSAKDDFSSIIGKCQVPKD-P----NPQ-------WRKLAWSPDCTLLA-YAE------ 62 (282)
T ss_pred eeecCCCcEEEEEec-cEEEEEeccCCchheeEEEecCCC-C----Cch-------heEEEECCCCcEEE-EEc------
Confidence 567899999998755 3555432 234444333322221 0 112 26899999999999 653
Q ss_pred CCCEEEEEECCCCceeeeeccCC-------CceeEEEEccCC-------CeEEEEecCCCCCCCCeEEEEe------CCC
Q 000736 200 LHKRLKVWERDSGTLQASSELKA-------FMGAVLEWMPSG-------ANIAAVYDRKSENKCPSIVFYE------RNG 259 (1323)
Q Consensus 200 ~d~~IrVWd~~~G~l~~t~e~~~-------~~v~slawsPdG-------~lIAs~s~d~~~~~~~~V~~~e------~nG 259 (1323)
..++|+|+|. .|..+.+..+.. ..+..+.|-+-- .+|+..-+ ..++=|- .+.
T Consensus 63 S~G~i~vfdl-~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~-------G~L~Sy~vs~gt~q~y 134 (282)
T PF15492_consen 63 STGTIRVFDL-MGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYR-------GQLRSYLVSVGTNQGY 134 (282)
T ss_pred CCCeEEEEec-ccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEecc-------ceeeeEEEEcccCCcc
Confidence 3589999999 776666544322 112333333221 12221111 0111110 111
Q ss_pred eeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccC
Q 000736 260 LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE 294 (1323)
Q Consensus 260 l~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~ 294 (1323)
.....|.+..+....|.++.|.|..++|.+++...
T Consensus 135 ~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~ 169 (282)
T PF15492_consen 135 QENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQ 169 (282)
T ss_pred eeeEEEEecccCCCceeEEEEcCCCCEEEEeccCC
Confidence 22233444433345799999999999988876544
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.1e-06 Score=101.35 Aligned_cols=194 Identities=13% Similarity=0.066 Sum_probs=120.7
Q ss_pred CCCEEEEEEecCCCEEEEE---eCC-CcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEe-CCccEEEEeecCce
Q 000736 75 GDSITAFDYLMEKEALIVG---TSS-GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTT-GFGQILVMTHDWDL 149 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~La~a---s~d-G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s-~d~tV~l~t~~~d~ 149 (1323)
...+..=.|+|+++.++-. ... ..|.++++++++-+.+....+.-..-+|||||+.||.++ .||...+|.-+.+.
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~ 271 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG 271 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC
Confidence 3457778899999987643 222 358999999987776665566667889999999999986 46665555333222
Q ss_pred eeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEE
Q 000736 150 LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLE 229 (1323)
Q Consensus 150 ~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~sla 229 (1323)
.....+.... + .-..-+|+|||++++++++. ++.-.|-+.|++.+..........+. ..-.
T Consensus 272 ~~~~~Lt~~~-----------g---i~~~Ps~spdG~~ivf~Sdr----~G~p~I~~~~~~g~~~~riT~~~~~~-~~p~ 332 (425)
T COG0823 272 KNLPRLTNGF-----------G---INTSPSWSPDGSKIVFTSDR----GGRPQIYLYDLEGSQVTRLTFSGGGN-SNPV 332 (425)
T ss_pred CcceecccCC-----------c---cccCccCCCCCCEEEEEeCC----CCCcceEEECCCCCceeEeeccCCCC-cCcc
Confidence 1211121111 1 11378899999999977643 23346778888555443333222222 3778
Q ss_pred EccCCCeEEEEecCCCCCCCCeEEEEeCCCee-EEEEEeccCCCCcEEEEEEccCCCeeEEEEccC
Q 000736 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLE-RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE 294 (1323)
Q Consensus 230 wsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~-~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~ 294 (1323)
|||||++||..+...+ ...|...+.+... .. .+. .......-.|+|||+.+...+...
T Consensus 333 ~SpdG~~i~~~~~~~g---~~~i~~~~~~~~~~~~--~lt--~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 333 WSPDGDKIVFESSSGG---QWDIDKNDLASGGKIR--ILT--STYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred CCCCCCEEEEEeccCC---ceeeEEeccCCCCcEE--Ecc--ccccCCCCCcCCCCceEEEeccCC
Confidence 9999999999885422 2557667653211 11 111 122344678999999887766543
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.6e-06 Score=94.07 Aligned_cols=213 Identities=15% Similarity=0.102 Sum_probs=130.7
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC---CeEE---Eece------------ecCcEEEEEEcCCCCe--EEEE
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDG---NATE---VVGR------------VEGGVRFISPSPDGDL--LGVT 134 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~---~~~e---~vg~------------~~~~I~~~awSPDG~~--LA~~ 134 (1323)
.+-|.+|.|.-+|+.||+|-.+|.|.++.... ++.. ...+ ++..|+.++|-++|+. ..+.
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 35689999999999999999999999987642 1111 1111 2456899999999764 5667
Q ss_pred eCCccEEEEeecCceee--eeeecccCCCceeccC------------------cc-ccCCCCeEEEEEecCCcEEEEeec
Q 000736 135 TGFGQILVMTHDWDLLY--ENPLEELAEGFDVHEP------------------EL-SSSFSFKSPISWRGDGKYFATLSE 193 (1323)
Q Consensus 135 s~d~tV~l~t~~~d~~~--e~~l~~~~~~~~Vs~t------------------qf-~~~~~~i~~isWspDG~~lAtvss 193 (1323)
+.|.||++|...-.-.. +..+........++.. .| .+|+-.+.+|+.+.|+++|. ++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l-SA- 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL-SA- 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe-ec-
Confidence 88999999942100000 0000000011111100 01 16788899999999999998 43
Q ss_pred cccccCCCCEEEEEECCC-Cceeee--eccC-----CCceeEEEEccCCC-eEEEEecCCCCCCCCeEEEEeCC--C--e
Q 000736 194 FCNSSKLHKRLKVWERDS-GTLQAS--SELK-----AFMGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYERN--G--L 260 (1323)
Q Consensus 194 ~d~~~~~d~~IrVWd~~~-G~l~~t--~e~~-----~~~v~slawsPdG~-lIAs~s~d~~~~~~~~V~~~e~n--G--l 260 (1323)
.|=+|-+|+.+- .+.-.+ -.|+ ...+++--|+|.-. +++-++. +++|++.|.- - .
T Consensus 183 ------DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSS------KGtIrLcDmR~~aLCd 250 (433)
T KOG1354|consen 183 ------DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSS------KGTIRLCDMRQSALCD 250 (433)
T ss_pred ------cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecC------CCcEEEeechhhhhhc
Confidence 246899999841 111111 1122 22357788999764 4444444 4579999842 0 1
Q ss_pred eEE-EEEeccCC---------CCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee
Q 000736 261 ERS-SFDINEQI---------DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1323)
Q Consensus 261 ~~~-~f~l~~~~---------~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~ 305 (1323)
.|. .|..+... -..|..+.||++|+++.+...- +|+|||.+
T Consensus 251 ~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyl----tvk~wD~n 301 (433)
T KOG1354|consen 251 AHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL----TVKLWDLN 301 (433)
T ss_pred chhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc----eeEEEecc
Confidence 122 23333111 1358899999999999997665 69999984
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.2e-05 Score=88.38 Aligned_cols=349 Identities=12% Similarity=0.156 Sum_probs=194.2
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCC----
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSG---- 97 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG---- 97 (1323)
+....++.+-|--|+.....+ |..|.-. .... +... +...|..+.|||.+++|.+=+.-+
T Consensus 34 p~~~~~~SP~G~~l~~~~~~~-V~~~~g~--~~~~----------l~~~---~~~~V~~~~fSP~~kYL~tw~~~pi~~p 97 (561)
T COG5354 34 PVAYVSESPLGTYLFSEHAAG-VECWGGP--SKAK----------LVRF---RHPDVKYLDFSPNEKYLVTWSREPIIEP 97 (561)
T ss_pred chhheeecCcchheehhhccc-eEEcccc--chhh----------eeee---ecCCceecccCcccceeeeeccCCccCh
Confidence 455677778776666555555 8888762 2221 2221 135789999999999998754333
Q ss_pred -----------cEEEEeCCCCeEE-EeceecCc--EE-EEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCc
Q 000736 98 -----------LLLLHSVDGNATE-VVGRVEGG--VR-FISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGF 162 (1323)
Q Consensus 98 -----------~I~lw~~~~~~~e-~vg~~~~~--I~-~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~ 162 (1323)
.+.+||..++.+- ........ .+ -+.||-|..++|-..++ .+.+... .+-+.+.+.+..
T Consensus 98 e~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~-sl~i~e~-t~n~~~~p~~~l---- 171 (561)
T COG5354 98 EIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGS-SLYIHEI-TDNIEEHPFKNL---- 171 (561)
T ss_pred hhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccC-eEEEEec-CCccccCchhhc----
Confidence 4889999887653 21112233 45 78999999999888665 3444321 111111121111
Q ss_pred eeccCccccCCCCeEEEEEecCCc--EEEEeeccccc-cCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEE
Q 000736 163 DVHEPELSSSFSFKSPISWRGDGK--YFATLSEFCNS-SKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAA 239 (1323)
Q Consensus 163 ~Vs~tqf~~~~~~i~~isWspDG~--~lAtvss~d~~-~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs 239 (1323)
...++...+|+|-|. -|| . +-++ .+..++++||..-.+..+.+-.-..-.-..+-|.+.|+.|.+
T Consensus 172 ---------r~~gi~dFsisP~~n~~~la-~--~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~ 239 (561)
T COG5354 172 ---------RPVGILDFSISPEGNHDELA-Y--WTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLV 239 (561)
T ss_pred ---------cccceeeEEecCCCCCceEE-E--EccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEE
Confidence 124678899999754 455 2 2233 245689999998555555442111111257899999998754
Q ss_pred EecCC--CCC---CCCeEEEEeCCCeeEEEEEecc--CCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEE
Q 000736 240 VYDRK--SEN---KCPSIVFYERNGLERSSFDINE--QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLK 312 (1323)
Q Consensus 240 ~s~d~--~~~---~~~~V~~~e~nGl~~~~f~l~~--~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylk 312 (1323)
--... ++. ....+-++... ++.++. .-.+.|.+.+|+|+|+.+|+.+.-.+ .++-++++... +
T Consensus 240 l~~t~~ksnKsyfgesnLyl~~~~-----e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~p-a~~s~~~lr~N---l- 309 (561)
T COG5354 240 LVMTHTKSNKSYFGESNLYLLRIT-----ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMP-ASVSVFDLRGN---L- 309 (561)
T ss_pred EEEEeeecccceeccceEEEEeec-----ccccceeccccccceeeeecccCCceeEEecccc-cceeecccccc---e-
Confidence 32210 000 01223333322 222331 12467999999999999998873221 15667776542 1
Q ss_pred eEEEEecCCcEEEEEccCCCcEEEEEe--cCCcEEEEEEEEeeeeCCCeeEE-EEeCCEEEEeecCCcCCCCCceeeeec
Q 000736 313 YEIRYLRRDGIRFMWHPTKPLQLICWT--LDGQITTYNFIWTTAVMENSTAL-VIDGSKILVTPLSLSLMPPPMYLFSLK 389 (1323)
Q Consensus 313 q~l~~~~~~~~~v~Wsp~~~~~L~~~~--~~g~~~~~~~~~~~~~~d~~~v~-viDg~~l~lt~l~~~~vPppm~~~~l~ 389 (1323)
...+++.....+.|+|.+.+-|..+- ..|.+ .+|+.. +.-.++ ..+|.
T Consensus 310 -~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni----~i~~~~--~rf~~~~~~~~~---------------------- 360 (561)
T COG5354 310 -RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNI----EIFDPA--GRFKVAGAFNGL---------------------- 360 (561)
T ss_pred -EEecCCcccccccccCcccEEEEecCCccccce----EEeccC--CceEEEEEeecC----------------------
Confidence 11222233367788888776443222 12222 233322 222222 22221
Q ss_pred CCCCEEEEEEecCCCCCEEEEE------ECCCcEEEEECCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEE
Q 000736 390 FPTAVTEMAFYSKSSKNCLAAI------LSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLS 463 (1323)
Q Consensus 390 ~~~~V~~VaFSpdg~~~~LAs~------s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla 463 (1323)
+-.-+.||||| +.+-+. -.|+.|.||+..+.. .....++.|-|.+++.-
T Consensus 361 ---n~s~~~wspd~--qF~~~~~ts~k~~~Dn~i~l~~v~g~~--------------------~fel~~~~W~p~~~~~t 415 (561)
T COG5354 361 ---NTSYCDWSPDG--QFYDTDTTSEKLRVDNSIKLWDVYGAK--------------------VFELTNITWDPSGQYVT 415 (561)
T ss_pred ---CceEeeccCCc--eEEEecCCCcccccCcceEEEEecCch--------------------hhhhhhccccCCcccce
Confidence 11234588998 655443 247899999987531 11466788988887765
Q ss_pred EEecC
Q 000736 464 VSHHG 468 (1323)
Q Consensus 464 ~~~~~ 468 (1323)
+.+.+
T Consensus 416 tsSs~ 420 (561)
T COG5354 416 TSSSC 420 (561)
T ss_pred eeccC
Confidence 55443
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.44 E-value=4e-06 Score=93.70 Aligned_cols=300 Identities=13% Similarity=0.106 Sum_probs=157.7
Q ss_pred cCcEEEEEEcCCCCeEEEEeCCccEEEEeecCc------eeeeeeecccCCCcee-ccCccccCCCCeEEEEEecCCc--
Q 000736 116 EGGVRFISPSPDGDLLGVTTGFGQILVMTHDWD------LLYENPLEELAEGFDV-HEPELSSSFSFKSPISWRGDGK-- 186 (1323)
Q Consensus 116 ~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d------~~~e~~l~~~~~~~~V-s~tqf~~~~~~i~~isWspDG~-- 186 (1323)
.+-|.++.|..+|++||+|..+|.|.+..++-. ..++.+.|... -..+ + . .-...|..|.|-++|.
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepE-FDYLkS-l---eieEKinkIrw~~~~n~a 99 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPE-FDYLKS-L---EIEEKINKIRWLDDGNLA 99 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcc-cchhhh-h---hhhhhhhhceecCCCCcc
Confidence 356899999999999999999999999865421 11122111111 0000 0 0 1124678999999886
Q ss_pred EEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEc-cCC-----CeEEEEecCCCCCCCCeEEEEeCCCe
Q 000736 187 YFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM-PSG-----ANIAAVYDRKSENKCPSIVFYERNGL 260 (1323)
Q Consensus 187 ~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slaws-PdG-----~lIAs~s~d~~~~~~~~V~~~e~nGl 260 (1323)
.|. ++ +.+++||+|-..+-.... ++. .+.|. |-| ++...+..+ ..| +..
T Consensus 100 ~FL-ls------tNdktiKlWKi~er~~k~--~~~-----~~~~~~~~~~~~~lr~p~~~~~~------~~v---ea~-- 154 (433)
T KOG1354|consen 100 EFL-LS------TNDKTIKLWKIRERGSKK--EGY-----NLPEEGPPGTITSLRLPVEGRHD------LEV---EAS-- 154 (433)
T ss_pred EEE-Ee------cCCcceeeeeeecccccc--ccc-----cccccCCCCccceeeceeecccc------cee---eee--
Confidence 344 34 357999999763211111 110 01110 100 111111110 000 000
Q ss_pred eEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCC-eeEEEeEEE-EecC------Cc-EEEEEccCC
Q 000736 261 ERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN-HWYLKYEIR-YLRR------DG-IRFMWHPTK 331 (1323)
Q Consensus 261 ~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~-~wylkq~l~-~~~~------~~-~~v~Wsp~~ 331 (1323)
-++.| ...|+..|++|++|+|++.+.++..-+ |-||+..-- +-+ .|. .-+. .. ++..|||..
T Consensus 155 prRv~--aNaHtyhiNSIS~NsD~Et~lSADdLR----INLWnlei~d~sF---nIVDIKP~nmEeLteVITsaEFhp~~ 225 (433)
T KOG1354|consen 155 PRRVY--ANAHTYHINSISVNSDKETFLSADDLR----INLWNLEIIDQSF---NIVDIKPANMEELTEVITSAEFHPHH 225 (433)
T ss_pred eeeec--cccceeEeeeeeecCccceEeecccee----eeeccccccCCce---eEEEccccCHHHHHHHHhhhccCHhH
Confidence 00111 112456799999999999999986665 999997621 111 111 1111 23 667899998
Q ss_pred CcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEE
Q 000736 332 PLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAI 411 (1323)
Q Consensus 332 ~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~ 411 (1323)
...++..+..|++..++..-+ +..|... ++. ....-|.+-++++ +.-+.|.+|-||++| +.+.+-
T Consensus 226 cn~f~YSSSKGtIrLcDmR~~---------aLCd~hs-Klf--Eepedp~~rsffs-eiIsSISDvKFs~sG--ryilsR 290 (433)
T KOG1354|consen 226 CNVFVYSSSKGTIRLCDMRQS---------ALCDAHS-KLF--EEPEDPSSRSFFS-EIISSISDVKFSHSG--RYILSR 290 (433)
T ss_pred ccEEEEecCCCcEEEeechhh---------hhhcchh-hhh--ccccCCcchhhHH-HHhhhhhceEEccCC--cEEEEe
Confidence 887777777888776554311 1112111 111 1111121222211 234678999999999 777655
Q ss_pred ECCCcEEEEECCCCCccccccCCceeEee------eccccccCc---EEEEEEecCCeEEEEEecCCCCeeEEEE
Q 000736 412 LSDGCLCVVDLPAPDMLEDLEGTEFVVEA------CISETAFGS---VIHLIWLGSHLLLSVSHHGPRHSNYFRG 477 (1323)
Q Consensus 412 s~Dgti~lw~~~~~~~~~~~~g~~~~~~~------~~~~~~~~~---v~~l~~~~d~~lla~~~~~~~~~~~~~~ 477 (1323)
+. -+|++||+.-...+ ...+++.. |.. .+.+. -...+|+.++..+++|++. +-+.++.
T Consensus 291 Dy-ltvk~wD~nme~~p----v~t~~vh~~lr~kLc~l-YEnD~IfdKFec~~sg~~~~v~TGsy~--n~frvf~ 357 (433)
T KOG1354|consen 291 DY-LTVKLWDLNMEAKP----VETYPVHEYLRSKLCSL-YENDAIFDKFECSWSGNDSYVMTGSYN--NVFRVFN 357 (433)
T ss_pred cc-ceeEEEeccccCCc----ceEEeehHhHHHHHHHH-hhccchhheeEEEEcCCcceEeccccc--ceEEEec
Confidence 33 59999998532111 11222221 111 11222 2356899999999998874 4444444
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.8e-06 Score=101.06 Aligned_cols=236 Identities=13% Similarity=0.151 Sum_probs=143.0
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecC--CCEEEEEeCCCcE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLME--KEALIVGTSSGLL 99 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spd--g~~La~as~dG~I 99 (1323)
-+.++.|..+|+.|.++|+|--++.||+ +..+. ...++++ | .+.|-++.|.|. .+++++|..|..|
T Consensus 52 CVN~LeWn~dG~lL~SGSDD~r~ivWd~--~~~Kl---lhsI~Tg---H----taNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 52 CVNCLEWNADGELLASGSDDTRLIVWDP--FEYKL---LHSISTG---H----TANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred eecceeecCCCCEEeecCCcceEEeecc--hhcce---eeeeecc---c----ccceeEEeeeccCCCeEEEeccCcceE
Confidence 5788999999999999999999999999 66664 3333333 3 357999999995 4788999999999
Q ss_pred EEEeCCC--------C---eEEEeceecCcEEEEEEcCCC-CeEEEEeCCccEEEEeecCceeee--eeecccC-CCcee
Q 000736 100 LLHSVDG--------N---ATEVVGRVEGGVRFISPSPDG-DLLGVTTGFGQILVMTHDWDLLYE--NPLEELA-EGFDV 164 (1323)
Q Consensus 100 ~lw~~~~--------~---~~e~vg~~~~~I~~~awSPDG-~~LA~~s~d~tV~l~t~~~d~~~e--~~l~~~~-~~~~V 164 (1323)
+|+|++. + ++.+.+-|...|..++--|+| .++-++++||+|+-. |. .| .+-+..+ ....+
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQy----Di-REph~c~p~~~~~~~l~ 194 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQY----DI-REPHVCNPDEDCPSILV 194 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeee----cc-cCCccCCccccccHHHH
Confidence 9999973 1 123566678889999999999 999999999999543 32 11 1111111 00000
Q ss_pred ccCccccCCCCeEEEEEecCC-cEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecC
Q 000736 165 HEPELSSSFSFKSPISWRGDG-KYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDR 243 (1323)
Q Consensus 165 s~tqf~~~~~~i~~isWspDG-~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d 243 (1323)
+ ..+.--...++..+|.. .||| ||+.+ --.|+||+.- .+-+ +..+|..-++--
T Consensus 195 n---y~~~lielk~ltisp~rp~~la-VGgsd------pfarLYD~Rr-~lks-------------~~s~~~~~~~pp-- 248 (758)
T KOG1310|consen 195 N---YNPQLIELKCLTISPSRPYYLA-VGGSD------PFARLYDRRR-VLKS-------------FRSDGTMNTCPP-- 248 (758)
T ss_pred H---hchhhheeeeeeecCCCCceEE-ecCCC------chhhhhhhhh-hccC-------------CCCCccccCCCC--
Confidence 0 00000134678888865 5778 88644 4678999511 1111 111111111100
Q ss_pred CCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCe-eEEEEccCCCCeEEEEEeeCCe
Q 000736 244 KSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDL-LAAVVRFEEYDSVKICFFSNNH 308 (1323)
Q Consensus 244 ~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~-LA~~~~d~~~~~V~LW~~~n~~ 308 (1323)
..+..|.-|-..++...+..+... ...+.-+.|||+|+- |++++.+ .|.|+++++.+
T Consensus 249 ---~~~~cv~yf~p~hlkn~~gn~~~~-~~~~t~vtfnpNGtElLvs~~gE----hVYlfdvn~~~ 306 (758)
T KOG1310|consen 249 ---KDCRCVRYFSPGHLKNSQGNLDRY-ITCCTYVTFNPNGTELLVSWGGE----HVYLFDVNEDK 306 (758)
T ss_pred ---cccchhheecCccccCcccccccc-eeeeEEEEECCCCcEEEEeeCCe----EEEEEeecCCC
Confidence 012334444443321110001000 113567899999975 4555444 59999998654
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00017 Score=84.98 Aligned_cols=248 Identities=7% Similarity=-0.016 Sum_probs=139.0
Q ss_pred CCEEEEEeCC-----CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeC----------C
Q 000736 32 QNRLFFASSA-----NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTS----------S 96 (1323)
Q Consensus 32 ~~~l~~~s~~-----~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~----------d 96 (1323)
...+|+.... +.|+.+|. .+.+. +.+++.+ .....+ +||||+.|.++.. +
T Consensus 12 ~~~v~V~d~~~~~~~~~v~ViD~--~~~~v---~g~i~~G---------~~P~~~-~spDg~~lyva~~~~~R~~~G~~~ 76 (352)
T TIGR02658 12 ARRVYVLDPGHFAATTQVYTIDG--EAGRV---LGMTDGG---------FLPNPV-VASDGSFFAHASTVYSRIARGKRT 76 (352)
T ss_pred CCEEEEECCcccccCceEEEEEC--CCCEE---EEEEEcc---------CCCcee-ECCCCCEEEEEeccccccccCCCC
Confidence 3446655443 56888887 45554 3344433 233344 8999999988766 7
Q ss_pred CcEEEEeCCCCeEE--E-ece-----ecCcEEEEEEcCCCCeEEEEeC--CccEEEEe-ecCceeeeeeecccC------
Q 000736 97 GLLLLHSVDGNATE--V-VGR-----VEGGVRFISPSPDGDLLGVTTG--FGQILVMT-HDWDLLYENPLEELA------ 159 (1323)
Q Consensus 97 G~I~lw~~~~~~~e--~-vg~-----~~~~I~~~awSPDG~~LA~~s~--d~tV~l~t-~~~d~~~e~~l~~~~------ 159 (1323)
+.|.+||..+.+.. + +|. .-..-..+++||||++|.+... ++.|.+.+ ...+.+.++......
T Consensus 77 d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~ 156 (352)
T TIGR02658 77 DYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTA 156 (352)
T ss_pred CEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEec
Confidence 78999999986542 1 111 0112347899999999998763 67777765 345566655542211
Q ss_pred CCce-----------ec----------cC-ccccCCCCeE-EEE-EecCCcEEEEeeccccccCCCCEEEEEEC-----C
Q 000736 160 EGFD-----------VH----------EP-ELSSSFSFKS-PIS-WRGDGKYFATLSEFCNSSKLHKRLKVWER-----D 210 (1323)
Q Consensus 160 ~~~~-----------Vs----------~t-qf~~~~~~i~-~is-WspDG~~lAtvss~d~~~~~d~~IrVWd~-----~ 210 (1323)
+..+ |+ .. -|++.++.+. .-. +.+||+++- ++. .++|.+-|. .
T Consensus 157 e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~-vs~-------eG~V~~id~~~~~~~ 228 (352)
T TIGR02658 157 NDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVW-PTY-------TGKIFQIDLSSGDAK 228 (352)
T ss_pred CCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEE-Eec-------CCeEEEEecCCCcce
Confidence 0000 00 00 0111111000 002 333887665 543 278888884 1
Q ss_pred CCceeeeec---c----CCCceeEEEEccCCCeEEEEecCC----CCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEE
Q 000736 211 SGTLQASSE---L----KAFMGAVLEWMPSGANIAAVYDRK----SENKCPSIVFYERN-GLERSSFDINEQIDSTVELL 278 (1323)
Q Consensus 211 ~G~l~~t~e---~----~~~~v~slawsPdG~lIAs~s~d~----~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~l 278 (1323)
..+...+.. . ..+....++++|+|+.+-.....+ +......|.++|.. +..... ++. ...+..|
T Consensus 229 ~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~--i~v--G~~~~~i 304 (352)
T TIGR02658 229 FLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRK--IEL--GHEIDSI 304 (352)
T ss_pred ecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEE--EeC--CCceeeE
Confidence 222222211 1 122234599999999887643211 01234679889854 333332 221 2468999
Q ss_pred EEccCCC-eeEEEEccCCCCeEEEEEeeCCe
Q 000736 279 KWNCMSD-LLAAVVRFEEYDSVKICFFSNNH 308 (1323)
Q Consensus 279 aWSpDg~-~LA~~~~d~~~~~V~LW~~~n~~ 308 (1323)
++||||+ .|.+..... +.|.+.|..+.+
T Consensus 305 avS~Dgkp~lyvtn~~s--~~VsViD~~t~k 333 (352)
T TIGR02658 305 NVSQDAKPLLYALSTGD--KTLYIFDAETGK 333 (352)
T ss_pred EECCCCCeEEEEeCCCC--CcEEEEECcCCe
Confidence 9999999 776665322 269999988753
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.015 Score=72.90 Aligned_cols=98 Identities=10% Similarity=0.055 Sum_probs=60.7
Q ss_pred EEEEeecCCc-CCCCCceeeee---cC-----CCCEEEEEEecCCCCCEEEEEECCCcEEEEECCCCCccccccCCceeE
Q 000736 368 KILVTPLSLS-LMPPPMYLFSL---KF-----PTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVV 438 (1323)
Q Consensus 368 ~l~lt~l~~~-~vPppm~~~~l---~~-----~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~ 438 (1323)
.+++|++... ..-||.|.+++ ++ +.++.+++.|.+- +.+|+|-.||.|.++.-+-.... |..+.
T Consensus 93 llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l--~~Iv~Gf~nG~V~~~~GDi~RDr----gsr~~- 165 (933)
T KOG2114|consen 93 LLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL--KTIVCGFTNGLVICYKGDILRDR----GSRQD- 165 (933)
T ss_pred EEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc--cEEEEEecCcEEEEEcCcchhcc----cccee-
Confidence 5777877643 22337776332 22 4567899999997 89999999999999876531111 11111
Q ss_pred eeeccccccCcEEEEEEecCCeE-EEEEecCCCCeeEEEEe
Q 000736 439 EACISETAFGSVIHLIWLGSHLL-LSVSHHGPRHSNYFRGA 478 (1323)
Q Consensus 439 ~~~~~~~~~~~v~~l~~~~d~~l-la~~~~~~~~~~~~~~~ 478 (1323)
.. ....+.|+.+++..|++. |.++. .+++.+|.+
T Consensus 166 -~~--~~~~~pITgL~~~~d~~s~lFv~T---t~~V~~y~l 200 (933)
T KOG2114|consen 166 -YS--HRGKEPITGLALRSDGKSVLFVAT---TEQVMLYSL 200 (933)
T ss_pred -ee--ccCCCCceeeEEecCCceeEEEEe---cceeEEEEe
Confidence 00 112347999999999876 33322 256677766
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.39 E-value=9.9e-06 Score=101.19 Aligned_cols=243 Identities=14% Similarity=0.046 Sum_probs=154.5
Q ss_pred CCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCC-CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEE
Q 000736 32 QNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEP-GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE 110 (1323)
Q Consensus 32 ~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e 110 (1323)
...+.+||+|+.|..|+.- ..+....++.+--.+|.+.-.-+ +.. .-++|-.....|.++++-..|+|||....++.
T Consensus 1123 ~aLlLtas~dGvIRIwk~y-~~~~~~~eLVTaw~~Ls~~~~~~r~~~-~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~ 1200 (1387)
T KOG1517|consen 1123 DALLLTASSDGVIRIWKDY-ADKWKKPELVTAWSSLSDQLPGARGTG-LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVV 1200 (1387)
T ss_pred hhheeeeccCceEEEeccc-ccccCCceeEEeeccccccCccCCCCC-eeeehhhhCCeEEecCCeeEEEEEecccceeE
Confidence 3456778899999999872 23212122222112222211111 222 56789888888888888889999999875432
Q ss_pred --E-eceecCcEEEEEEcC-CCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCC--eEEEEEecC
Q 000736 111 --V-VGRVEGGVRFISPSP-DGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSF--KSPISWRGD 184 (1323)
Q Consensus 111 --~-vg~~~~~I~~~awSP-DG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~--i~~isWspD 184 (1323)
+ .|. +..|++++=+- .|..+|.|-+||.|+++++--.+.. . .| ..++.|.+. |..+++.+.
T Consensus 1201 ~diP~~s-~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d-s---------~v--~~~R~h~~~~~Iv~~slq~~ 1267 (1387)
T KOG1517|consen 1201 ADIPYGS-STLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD-S---------LV--CVYREHNDVEPIVHLSLQRQ 1267 (1387)
T ss_pred eecccCC-CccceeecccccCCceEEEeecCCceEEeecccCCcc-c---------cc--eeecccCCcccceeEEeecC
Confidence 2 232 55677665433 3699999999999998764322110 0 00 012234444 788888776
Q ss_pred CcE-EEEeeccccccCCCCEEEEEECCCCceeeeeccCC----C-ceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000736 185 GKY-FATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA----F-MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1323)
Q Consensus 185 G~~-lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~----~-~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~n 258 (1323)
|-- |+ +++ .+|.|++||.+.......+.-.. | ..+++.-++....||||+. ..|++|+..
T Consensus 1268 G~~elv-Sgs------~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-------q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1268 GLGELV-SGS------QDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-------QLIKIYSLS 1333 (1387)
T ss_pred CCccee-eec------cCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-------ceEEEEecC
Confidence 543 44 343 35899999984322222222111 3 3688999999999999986 369999988
Q ss_pred CeeEEEEEec----cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeC
Q 000736 259 GLERSSFDIN----EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1323)
Q Consensus 259 Gl~~~~f~l~----~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n 306 (1323)
|...+.+.-. ++.-+.+.+++|+|---+||+|+.|. +|-||...+
T Consensus 1334 G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds---~V~iYs~~k 1382 (1387)
T KOG1517|consen 1334 GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADS---TVSIYSCEK 1382 (1387)
T ss_pred hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCc---eEEEeecCC
Confidence 8766544322 12235689999999999999998888 999988765
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00018 Score=82.01 Aligned_cols=214 Identities=17% Similarity=0.120 Sum_probs=136.8
Q ss_pred CCEEEEEEec-CCCEEEEEeCCCcEEE-EeCCCCeEE-EeceecCcEE--EEEEcCCCCeEEEE-----eCCccEEEEee
Q 000736 76 DSITAFDYLM-EKEALIVGTSSGLLLL-HSVDGNATE-VVGRVEGGVR--FISPSPDGDLLGVT-----TGFGQILVMTH 145 (1323)
Q Consensus 76 ~~V~~v~~sp-dg~~La~as~dG~I~l-w~~~~~~~e-~vg~~~~~I~--~~awSPDG~~LA~~-----s~d~tV~l~t~ 145 (1323)
+..-+++.+| +++.++++-.-|+..+ ||..+++.. .+-.-++.-. -..|||||++|-+. ++.|.|-+|+.
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 3455778899 7788889999998654 898886543 2221111111 35799999998876 45677888864
Q ss_pred c--CceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEee--ccccc-cC---------CCCEEEEEECCC
Q 000736 146 D--WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLS--EFCNS-SK---------LHKRLKVWERDS 211 (1323)
Q Consensus 146 ~--~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvs--s~d~~-~~---------~d~~IrVWd~~~ 211 (1323)
. +..+.|.+.+.- +-..+.|.|||+.|+ ++ ++... +. -+-.+-.-|..+
T Consensus 85 ~~~~~ri~E~~s~GI----------------GPHel~l~pDG~tLv-VANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s 147 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGI----------------GPHELLLMPDGETLV-VANGGIETHPDSGRAKLNLDTMQPSLVYLDARS 147 (305)
T ss_pred cCCcEEEeEecCCCc----------------ChhhEEEcCCCCEEE-EEcCCCccCcccCceecChhhcCCceEEEecCC
Confidence 3 444444443322 224588999998887 55 22110 01 112244567779
Q ss_pred Cceeeeec----cCCCceeEEEEccCCCeEEEEecCCCC-CCCCeEEEEeCCCeeEEEEEecc----CCCCcEEEEEEcc
Q 000736 212 GTLQASSE----LKAFMGAVLEWMPSGANIAAVYDRKSE-NKCPSIVFYERNGLERSSFDINE----QIDSTVELLKWNC 282 (1323)
Q Consensus 212 G~l~~t~e----~~~~~v~slawsPdG~lIAs~s~d~~~-~~~~~V~~~e~nGl~~~~f~l~~----~~~~~V~~laWSp 282 (1323)
|+++...+ -+.-.+..|+|.++|..+...+..... ....-|.++.+.+.. ..+..+. ...+.|-+|++++
T Consensus 148 G~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~-~~~~~p~~~~~~l~~Y~gSIa~~~ 226 (305)
T PF07433_consen 148 GALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGAL-RLLPAPEEQWRRLNGYIGSIAADR 226 (305)
T ss_pred CceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcc-eeccCChHHHHhhCCceEEEEEeC
Confidence 99877632 244568999999999988877765431 223456677765532 2222221 1135699999999
Q ss_pred CCCeeEEEEccCCCCeEEEEEeeCCee
Q 000736 283 MSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1323)
Q Consensus 283 Dg~~LA~~~~d~~~~~V~LW~~~n~~w 309 (1323)
||..+|+.+-.+ +.+.+||..+..|
T Consensus 227 ~g~~ia~tsPrG--g~~~~~d~~tg~~ 251 (305)
T PF07433_consen 227 DGRLIAVTSPRG--GRVAVWDAATGRL 251 (305)
T ss_pred CCCEEEEECCCC--CEEEEEECCCCCE
Confidence 999998887543 5899999988765
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.3e-05 Score=100.98 Aligned_cols=214 Identities=14% Similarity=0.022 Sum_probs=127.5
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeecccc-ccccccCC--------CCCCEEEEEEecC-CCEE
Q 000736 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISA-EIEHIDLE--------PGDSITAFDYLME-KEAL 90 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~--------~~~~V~~v~~spd-g~~L 90 (1323)
.+.++++|++++.||++.. ++.|..+|+ .++. +.++.. +..+..+. ......+|+|+|+ +...
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~--~~~~----V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~Ly 698 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDF--VNET----VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVY 698 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEec--CCCE----EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEE
Confidence 4688999999999999865 556888887 3433 222211 10000000 0135678999994 5555
Q ss_pred EEEeCCCcEEEEeCCCCeEEEecee---------------cCcEEEEEEcCCCCeEEEE-eCCccEEEEeec-Cceeeee
Q 000736 91 IVGTSSGLLLLHSVDGNATEVVGRV---------------EGGVRFISPSPDGDLLGVT-TGFGQILVMTHD-WDLLYEN 153 (1323)
Q Consensus 91 a~as~dG~I~lw~~~~~~~e~vg~~---------------~~~I~~~awSPDG~~LA~~-s~d~tV~l~t~~-~d~~~e~ 153 (1323)
++.+.++.|.+||..++.+..++.. -.....++|+|||+.|.++ +++++|.+|+.. +... .
T Consensus 699 Vad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~--~ 776 (1057)
T PLN02919 699 IAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSR--L 776 (1057)
T ss_pred EEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEE--E
Confidence 6667789999999987765432210 0124569999999855544 567899888632 2210 0
Q ss_pred eecccC-----------CCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeec-cC
Q 000736 154 PLEELA-----------EGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-LK 221 (1323)
Q Consensus 154 ~l~~~~-----------~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e-~~ 221 (1323)
...... ....-+..+| ..-..++|++||..++ +. ..+++|++||..+|....... +.
T Consensus 777 ~~gg~~~~~~~l~~fG~~dG~g~~~~l----~~P~Gvavd~dG~LYV-AD------s~N~rIrviD~~tg~v~tiaG~G~ 845 (1057)
T PLN02919 777 LAGGDPTFSDNLFKFGDHDGVGSEVLL----QHPLGVLCAKDGQIYV-AD------SYNHKIKKLDPATKRVTTLAGTGK 845 (1057)
T ss_pred EEecccccCcccccccCCCCchhhhhc----cCCceeeEeCCCcEEE-EE------CCCCEEEEEECCCCeEEEEeccCC
Confidence 000000 0000000011 1225799999999776 33 246899999996665543211 11
Q ss_pred ------------CCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCe
Q 000736 222 ------------AFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL 260 (1323)
Q Consensus 222 ------------~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl 260 (1323)
-.....|+++|+|+++++-+. .+.|++|+.+..
T Consensus 846 ~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~------Nn~Irvid~~~~ 890 (1057)
T PLN02919 846 AGFKDGKALKAQLSEPAGLALGENGRLFVADTN------NSLIRYLDLNKG 890 (1057)
T ss_pred cCCCCCcccccccCCceEEEEeCCCCEEEEECC------CCEEEEEECCCC
Confidence 013468999999997766544 468999997653
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.9e-05 Score=87.52 Aligned_cols=201 Identities=12% Similarity=0.095 Sum_probs=131.4
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEeCCC-----CeEEEeceecCcEEEEEEcCCCCeEEE-EeCC--ccEEEEeecC
Q 000736 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDG-----NATEVVGRVEGGVRFISPSPDGDLLGV-TTGF--GQILVMTHDW 147 (1323)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~~~~-----~~~e~vg~~~~~I~~~awSPDG~~LA~-~s~d--~tV~l~t~~~ 147 (1323)
..|.+++..- ..|.++..+|.+.+|+... ..+.... ...++..+.=+|.-..++. |+.. +.+.+|+..-
T Consensus 106 ~~I~gl~~~d--g~Litc~~sG~l~~~~~k~~d~hss~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~ 182 (412)
T KOG3881|consen 106 KSIKGLKLAD--GTLITCVSSGNLQVRHDKSGDLHSSKLIKLA-TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQ 182 (412)
T ss_pred ccccchhhcC--CEEEEEecCCcEEEEeccCCccccccceeee-cCCceeeeccCCCCCceEecCchhcccceeeeeccc
Confidence 5667766553 3566778899999999873 2222111 2367888888877665554 6666 5677775321
Q ss_pred c-eee-eeeecccC--CCceeccCccccCCCCeEEEEEecC--CcEEEEeeccccccCCCCEEEEEECCCCc-eeeeecc
Q 000736 148 D-LLY-ENPLEELA--EGFDVHEPELSSSFSFKSPISWRGD--GKYFATLSEFCNSSKLHKRLKVWERDSGT-LQASSEL 220 (1323)
Q Consensus 148 d-~~~-e~~l~~~~--~~~~Vs~tqf~~~~~~i~~isWspD--G~~lAtvss~d~~~~~d~~IrVWd~~~G~-l~~t~e~ 220 (1323)
. .+. ......+. -.-+| .+..+.|-++ .+.|||+. .-+.+|+||...|. ....+.-
T Consensus 183 ~~qiw~aKNvpnD~L~LrVPv----------W~tdi~Fl~g~~~~~fat~T-------~~hqvR~YDt~~qRRPV~~fd~ 245 (412)
T KOG3881|consen 183 SKQIWSAKNVPNDRLGLRVPV----------WITDIRFLEGSPNYKFATIT-------RYHQVRLYDTRHQRRPVAQFDF 245 (412)
T ss_pred ceeeeeccCCCCccccceeee----------eeccceecCCCCCceEEEEe-------cceeEEEecCcccCcceeEecc
Confidence 1 110 11111111 01111 3467777776 77888553 23789999986553 4445555
Q ss_pred CCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEE
Q 000736 221 KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVK 300 (1323)
Q Consensus 221 ~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~ 300 (1323)
....+++++--|+|++|.++.. ...+..||.++.++.-..+. .-.+.|.+|.-.|.+.+||+++-|+ .|+
T Consensus 246 ~E~~is~~~l~p~gn~Iy~gn~------~g~l~~FD~r~~kl~g~~~k-g~tGsirsih~hp~~~~las~GLDR---yvR 315 (412)
T KOG3881|consen 246 LENPISSTGLTPSGNFIYTGNT------KGQLAKFDLRGGKLLGCGLK-GITGSIRSIHCHPTHPVLASCGLDR---YVR 315 (412)
T ss_pred ccCcceeeeecCCCcEEEEecc------cchhheecccCceeeccccC-CccCCcceEEEcCCCceEEeeccce---eEE
Confidence 5667899999999999998865 35688899665444322222 1256899999999999999999999 999
Q ss_pred EEEeeC
Q 000736 301 ICFFSN 306 (1323)
Q Consensus 301 LW~~~n 306 (1323)
|+|..+
T Consensus 316 IhD~kt 321 (412)
T KOG3881|consen 316 IHDIKT 321 (412)
T ss_pred Eeeccc
Confidence 999987
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.1e-05 Score=101.36 Aligned_cols=193 Identities=13% Similarity=0.050 Sum_probs=135.7
Q ss_pred eecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000736 28 LDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGN 107 (1323)
Q Consensus 28 ~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~ 107 (1323)
.-.+.-.++.++.++.+..||.+ ... ....+..+=+ .+-....-+.++++.-++++|+.-|.|++|.....
T Consensus 95 l~~e~k~i~l~~~~ns~~i~d~~--~~~---~~~~i~~~er----~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d 165 (967)
T KOG0974|consen 95 LFEENKKIALVTSRNSLLIRDSK--NSS---VLSKIQSDER----CTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED 165 (967)
T ss_pred hhhhcceEEEEEcCceEEEEecc--cCc---eehhcCCCce----EEEEeEEEEeccCcEEEEEeccccccEEEEecccc
Confidence 34456667777777778888873 211 1221111100 00123455677888899999999999999998642
Q ss_pred e--EEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCC
Q 000736 108 A--TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDG 185 (1323)
Q Consensus 108 ~--~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG 185 (1323)
. ....| |++.|.++.||-||.++|++|.|.++++|.-+ +...+.. .--+|..+++.+.+.|.
T Consensus 166 n~p~~l~G-HeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~----s~~~~~~----------~~fgHsaRvw~~~~~~n- 229 (967)
T KOG0974|consen 166 NKPIRLKG-HEGSIFSIVTSLDGRYIASVSDDRSIRLWPID----SREVLGC----------TGFGHSARVWACCFLPN- 229 (967)
T ss_pred CCcceecc-cCCceEEEEEccCCcEEEEEecCcceeeeecc----cccccCc----------ccccccceeEEEEeccc-
Confidence 2 33566 59999999999999999999999999888532 1111110 01167889999999998
Q ss_pred cEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCC-ceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCe
Q 000736 186 KYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF-MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL 260 (1323)
Q Consensus 186 ~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~-~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl 260 (1323)
+++ +. +.|.+.|+|+. +|..+.+.+.|.+ .++.++..++--.+.+++.| ..+++|+.+|.
T Consensus 230 -~i~-t~------gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~D------s~lk~~~l~~r 290 (967)
T KOG0974|consen 230 -RII-TV------GEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGND------STLKLWDLNGR 290 (967)
T ss_pred -eeE-Ee------ccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccC------cchhhhhhhcc
Confidence 677 33 35799999988 8887777666544 67899988888888888876 46999998764
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00014 Score=92.87 Aligned_cols=178 Identities=13% Similarity=0.106 Sum_probs=107.1
Q ss_pred EeCCCCeEEEeceecCcEEEEEEcCCC-CeEEEEeCCccEEEEeecCceeeee-eecccCCCceeccCccccCCCCeEEE
Q 000736 102 HSVDGNATEVVGRVEGGVRFISPSPDG-DLLGVTTGFGQILVMTHDWDLLYEN-PLEELAEGFDVHEPELSSSFSFKSPI 179 (1323)
Q Consensus 102 w~~~~~~~e~vg~~~~~I~~~awSPDG-~~LA~~s~d~tV~l~t~~~d~~~e~-~l~~~~~~~~Vs~tqf~~~~~~i~~i 179 (1323)
|++.|..+..+-.|...|..++-|++. .++++||.||||++|+.. +...+. ... ++..++.-.+.+..+
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~-k~~~~~~s~r--------S~ltys~~~sr~~~v 1104 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLR-KLEGEGGSAR--------SELTYSPEGSRVEKV 1104 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeeh-hhhcCcceee--------eeEEEeccCCceEEE
Confidence 777776665455567777777776655 999999999999999631 111110 000 011111223566888
Q ss_pred EEecCCcEEEEeeccccccCCCCEEEEEECCC--Cceeeeec------cCCC-ceeEEEEcc-CCC-eEEEEecCCCCCC
Q 000736 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDS--GTLQASSE------LKAF-MGAVLEWMP-SGA-NIAAVYDRKSENK 248 (1323)
Q Consensus 180 sWspDG~~lAtvss~d~~~~~d~~IrVWd~~~--G~l~~t~e------~~~~-~v~slawsP-dG~-lIAs~s~d~~~~~ 248 (1323)
..-+.|..|| +|+ .||.|++...+- +....... ..+| .+..-+|.- ++. .|+.+...
T Consensus 1105 t~~~~~~~~A-v~t------~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~----- 1172 (1431)
T KOG1240|consen 1105 TMCGNGDQFA-VST------KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDL----- 1172 (1431)
T ss_pred EeccCCCeEE-EEc------CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEec-----
Confidence 8889999999 874 468888887632 22111110 1122 233334432 233 44444442
Q ss_pred CCeEEEEeCCCeeEEEEEecc-CCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee
Q 000736 249 CPSIVFYERNGLERSSFDINE-QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1323)
Q Consensus 249 ~~~V~~~e~nGl~~~~f~l~~-~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~ 305 (1323)
..|+.||.- .+|.-+++.. ...+.|.+++-+|-+..|++|+..| .+-+||+.
T Consensus 1173 -~~iv~~D~r-~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G---~l~lWDLR 1225 (1431)
T KOG1240|consen 1173 -SRIVSWDTR-MRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRG---QLVLWDLR 1225 (1431)
T ss_pred -cceEEecch-hhhhHHhhhcCccccceeEEEecCCceEEEEecCCc---eEEEEEee
Confidence 458888842 2232233331 2246799999999999999999988 89999986
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00015 Score=86.03 Aligned_cols=279 Identities=12% Similarity=0.081 Sum_probs=169.0
Q ss_pred CCCEEEEEEecCCCEE-EEEeCCCcEEEEeCCCCeEEEeceecC-cEEEEEEcCCCCeEEEEeCCccEEEEeecCceeee
Q 000736 75 GDSITAFDYLMEKEAL-IVGTSSGLLLLHSVDGNATEVVGRVEG-GVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYE 152 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~L-a~as~dG~I~lw~~~~~~~e~vg~~~~-~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e 152 (1323)
...-+.|..+|||+++ |+|.-.-.|++||+..-.+..--+.+. .|.-.-.|-|-.-++.--.|.+|-+-.+.+- ...
T Consensus 51 p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~-hy~ 129 (703)
T KOG2321|consen 51 PTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR-HYR 129 (703)
T ss_pred ccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCe-eee
Confidence 3556889999999975 577777789999998755543333333 3555666777666777777777744221110 011
Q ss_pred eeecccCCCceeccCccccCCCCeEEEEE-ecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEc
Q 000736 153 NPLEELAEGFDVHEPELSSSFSFKSPISW-RGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM 231 (1323)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~i~~isW-spDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slaws 231 (1323)
+.+... + ..++. +|...++. +++ + ..|.-.|.+.|..+..++...+.++++..+
T Consensus 130 ~RIP~~---------------G--RDm~y~~~scDly~-~gs------g-~evYRlNLEqGrfL~P~~~~~~~lN~v~in 184 (703)
T KOG2321|consen 130 TRIPKF---------------G--RDMKYHKPSCDLYL-VGS------G-SEVYRLNLEQGRFLNPFETDSGELNVVSIN 184 (703)
T ss_pred eecCcC---------------C--ccccccCCCccEEE-eec------C-cceEEEEccccccccccccccccceeeeec
Confidence 111100 0 12222 22333333 332 1 345556898999999888777888999999
Q ss_pred cCCCeEEEEecCCCCCCCCeEEEEeCCC-eeEEEEEecc-----CC---CCcEEEEEEccCCCeeEEEEccCCCCeEEEE
Q 000736 232 PSGANIAAVYDRKSENKCPSIVFYERNG-LERSSFDINE-----QI---DSTVELLKWNCMSDLLAAVVRFEEYDSVKIC 302 (1323)
Q Consensus 232 PdG~lIAs~s~d~~~~~~~~V~~~e~nG-l~~~~f~l~~-----~~---~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW 302 (1323)
|-..+||+|+.+ +.|-|||.-. .+.+...... ++ ...|.+|+|+.||-.+|+|+++| .|-|+
T Consensus 185 ~~hgLla~Gt~~------g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G---~v~iy 255 (703)
T KOG2321|consen 185 EEHGLLACGTED------GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG---SVLIY 255 (703)
T ss_pred CccceEEecccC------ceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCC---cEEEE
Confidence 999999999875 5799999422 1222221111 11 13599999999999999999999 89999
Q ss_pred EeeCCeeEEEeEEEEecCC-c-EEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCC
Q 000736 303 FFSNNHWYLKYEIRYLRRD-G-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMP 380 (1323)
Q Consensus 303 ~~~n~~wylkq~l~~~~~~-~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vP 380 (1323)
|+.....++... |... + ..+.|-+.+ +...++..|-..+++|+-.. .
T Consensus 256 DLRa~~pl~~kd---h~~e~pi~~l~~~~~~-------------------------~q~~v~S~Dk~~~kiWd~~~---G 304 (703)
T KOG2321|consen 256 DLRASKPLLVKD---HGYELPIKKLDWQDTD-------------------------QQNKVVSMDKRILKIWDECT---G 304 (703)
T ss_pred EcccCCceeecc---cCCccceeeecccccC-------------------------CCceEEecchHHhhhccccc---C
Confidence 987643322110 0001 1 334443331 22234444555666665322 2
Q ss_pred CCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECC
Q 000736 381 PPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1323)
Q Consensus 381 ppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~ 423 (1323)
.||. .++-...++++.|-|++ -++.++..++.+.-|-++
T Consensus 305 k~~a--siEpt~~lND~C~~p~s--Gm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 305 KPMA--SIEPTSDLNDFCFVPGS--GMFFTANESSKMHTYYIP 343 (703)
T ss_pred Ccee--eccccCCcCceeeecCC--ceEEEecCCCcceeEEcc
Confidence 3444 34445568999999998 688777766666555443
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00048 Score=78.71 Aligned_cols=233 Identities=13% Similarity=0.010 Sum_probs=133.8
Q ss_pred ceeEEeeec-CCCEEEEEeCCC-cEEEEecccccccccceeeccccc--cccccCCCCCCEEEEEEecCCCEEEEE----
Q 000736 22 ILQFSALDI-EQNRLFFASSAN-NIYSAQLSSFQNERASIKTAISAE--IEHIDLEPGDSITAFDYLMEKEALIVG---- 93 (1323)
Q Consensus 22 ~~~~~~~d~-~~~~l~~~s~~~-~i~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~V~~v~~spdg~~La~a---- 93 (1323)
..-+++..+ ....|+|+---+ ..+.+|. .++.....+. -+.+ +.+| -.|||||+.|.+.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~--~~g~~~~~~~-a~~gRHFyGH----------g~fs~dG~~LytTEnd~ 72 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDC--RTGQLLQRLW-APPGRHFYGH----------GVFSPDGRLLYTTENDY 72 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEc--CCCceeeEEc-CCCCCEEecC----------EEEcCCCCEEEEecccc
Confidence 666777887 566667775544 4667888 5665421111 1111 2222 3599999999874
Q ss_pred -eCCCcEEEEeCCC--CeEEEeceecCcEEEEEEcCCCCeEEEEeCC-------ccEEE-----------E-eecCceee
Q 000736 94 -TSSGLLLLHSVDG--NATEVVGRVEGGVRFISPSPDGDLLGVTTGF-------GQILV-----------M-THDWDLLY 151 (1323)
Q Consensus 94 -s~dG~I~lw~~~~--~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d-------~tV~l-----------~-t~~~d~~~ 151 (1323)
+..|-|-+||... .++.....+--+---+.|.|||++|+++.+- |..++ + ..+++++.
T Consensus 73 ~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~ 152 (305)
T PF07433_consen 73 ETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLE 152 (305)
T ss_pred CCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceee
Confidence 5567899999983 2232322222234567899999999998541 22222 1 12222222
Q ss_pred eeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeecccccc-CCCCEEEEEECCCCceeeeec------cCCCc
Q 000736 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSS-KLHKRLKVWERDSGTLQASSE------LKAFM 224 (1323)
Q Consensus 152 e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~-~~d~~IrVWd~~~G~l~~t~e------~~~~~ 224 (1323)
...+.+. -|..++..++|++||..+. ..=+.+.. ..--.+-++++ .+.+..... ...+.
T Consensus 153 q~~Lp~~------------~~~lSiRHLa~~~~G~V~~-a~Q~qg~~~~~~PLva~~~~-g~~~~~~~~p~~~~~~l~~Y 218 (305)
T PF07433_consen 153 QVELPPD------------LHQLSIRHLAVDGDGTVAF-AMQYQGDPGDAPPLVALHRR-GGALRLLPAPEEQWRRLNGY 218 (305)
T ss_pred eeecCcc------------ccccceeeEEecCCCcEEE-EEecCCCCCccCCeEEEEcC-CCcceeccCChHHHHhhCCc
Confidence 2222111 1345788999999997554 22121110 01124666766 443333211 24567
Q ss_pred eeEEEEccCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEc
Q 000736 225 GAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVR 292 (1323)
Q Consensus 225 v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~ 292 (1323)
+.+|+++++|.+||.++-. .+.+.+|+. +|...+...+ ..+..|+-.+++ .|++.+.
T Consensus 219 ~gSIa~~~~g~~ia~tsPr-----Gg~~~~~d~~tg~~~~~~~l-----~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 219 IGSIAADRDGRLIAVTSPR-----GGRVAVWDAATGRLLGSVPL-----PDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred eEEEEEeCCCCEEEEECCC-----CCEEEEEECCCCCEeecccc-----CceeeeeecCCc-eEEeCCC
Confidence 8999999999999888764 468999974 4444333222 247788888888 5555443
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00018 Score=83.46 Aligned_cols=148 Identities=16% Similarity=0.242 Sum_probs=104.8
Q ss_pred CCEEEEEEecCCCEEEEEeCCC-cEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeee
Q 000736 76 DSITAFDYLMEKEALIVGTSSG-LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1323)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG-~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~ 154 (1323)
+.|.-..+.-|++.+++|..|| .+-++|.+|++.+....--+.|.++.-||||+.++.+.....+.+.+.+-.....+.
T Consensus 360 ~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~id 439 (668)
T COG4946 360 GGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID 439 (668)
T ss_pred CceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec
Confidence 5688899999999999999999 688899999987744333477999999999999988876554433322211111111
Q ss_pred ecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCC
Q 000736 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG 234 (1323)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG 234 (1323)
. ...+-|+.+.|+|++++|| -+.-+ +--.+.|+++|..+|+......+. +.-.+-||-|||
T Consensus 440 --k-------------S~~~lItdf~~~~nsr~iA-YafP~--gy~tq~Iklydm~~~Kiy~vTT~t-a~DfsPaFD~d~ 500 (668)
T COG4946 440 --K-------------SEYGLITDFDWHPNSRWIA-YAFPE--GYYTQSIKLYDMDGGKIYDVTTPT-AYDFSPAFDPDG 500 (668)
T ss_pred --c-------------cccceeEEEEEcCCceeEE-EecCc--ceeeeeEEEEecCCCeEEEecCCc-ccccCcccCCCC
Confidence 1 1235679999999999999 55432 123468999999666766654432 223577999999
Q ss_pred CeEEEEec
Q 000736 235 ANIAAVYD 242 (1323)
Q Consensus 235 ~lIAs~s~ 242 (1323)
+.|---+.
T Consensus 501 ryLYfLs~ 508 (668)
T COG4946 501 RYLYFLSA 508 (668)
T ss_pred cEEEEEec
Confidence 98876654
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.12 E-value=8.8e-06 Score=94.13 Aligned_cols=228 Identities=10% Similarity=0.028 Sum_probs=156.5
Q ss_pred eeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEE
Q 000736 23 LQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLH 102 (1323)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw 102 (1323)
+.-+-|...|.-+..+.-.+.+-..|- .+++....+. + ...|.++.|+-.-+++|+|- ..-+.+|
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw--~t~~L~~Ei~-----v-------~Etv~Dv~~LHneq~~AVAQ-K~y~yvY 196 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDW--VTKKLHFEIN-----V-------METVRDVTFLHNEQFFAVAQ-KKYVYVY 196 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeec--ccceeeeeee-----h-------hhhhhhhhhhcchHHHHhhh-hceEEEe
Confidence 445666677788888777666766666 5555433332 1 34789999999999999884 5678999
Q ss_pred eCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe-ecCceeeeeeecccCCCceeccCccccCCCCeEEEEE
Q 000736 103 SVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISW 181 (1323)
Q Consensus 103 ~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isW 181 (1323)
|-.+.++-|+-. ..+|..+.|=|--=+||+++..|-+.--+ ..+..+.++.. ..+.+..++=
T Consensus 197 D~~GtElHClk~-~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t----------------~~G~~~vm~q 259 (545)
T KOG1272|consen 197 DNNGTELHCLKR-HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT----------------GAGRTDVMKQ 259 (545)
T ss_pred cCCCcEEeehhh-cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHc----------------cCCccchhhc
Confidence 999988888876 46799999999998999999988775432 11222222211 1123344555
Q ss_pred ecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCee
Q 000736 182 RGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE 261 (1323)
Q Consensus 182 spDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~ 261 (1323)
+|-...+- +| ...++|-+|++..-+.+...--|.+.|.+||+.|+|++.|+++-| ..|++||.-+..
T Consensus 260 NP~NaVih-~G------hsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~D------r~~kIWDlR~~~ 326 (545)
T KOG1272|consen 260 NPYNAVIH-LG------HSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLD------RKVKIWDLRNFY 326 (545)
T ss_pred CCccceEE-Ec------CCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccc------cceeEeeecccc
Confidence 66665555 44 346899999996666555555689999999999999999999986 569999954332
Q ss_pred EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEE
Q 000736 262 RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICF 303 (1323)
Q Consensus 262 ~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~ 303 (1323)
+- .++..+ .....+++|--| +||.+..+ .|+||-
T Consensus 327 ql-~t~~tp--~~a~~ls~Sqkg-lLA~~~G~----~v~iw~ 360 (545)
T KOG1272|consen 327 QL-HTYRTP--HPASNLSLSQKG-LLALSYGD----HVQIWK 360 (545)
T ss_pred cc-ceeecC--CCcccccccccc-ceeeecCC----eeeeeh
Confidence 11 112221 245678888776 56665544 488886
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.3e-05 Score=89.85 Aligned_cols=156 Identities=12% Similarity=0.115 Sum_probs=109.6
Q ss_pred cccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCce-eeeeccCCCceeEEEEccC--CCeEEEEecCCC
Q 000736 169 LSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL-QASSELKAFMGAVLEWMPS--GANIAAVYDRKS 245 (1323)
Q Consensus 169 f~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l-~~t~e~~~~~v~slawsPd--G~lIAs~s~d~~ 245 (1323)
+.||.+-|.++.|+.||.+|| +||. |-.+-|||.-.-++ +++..+|.+-|-++-|=|- .++|+||..|
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~-SGSD------D~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgD-- 116 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLA-SGSD------DTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGD-- 116 (758)
T ss_pred hccccceecceeecCCCCEEe-ecCC------cceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCc--
Confidence 448999999999999999999 6653 57888999865444 5567889999999999995 3577888775
Q ss_pred CCCCCeEEEEeCCCeeEEEE------Eec--cCCCCcEEEEEEccCC-CeeEEEEccCCCCeEEEEEeeCCeeEEEeEEE
Q 000736 246 ENKCPSIVFYERNGLERSSF------DIN--EQIDSTVELLKWNCMS-DLLAAVVRFEEYDSVKICFFSNNHWYLKYEIR 316 (1323)
Q Consensus 246 ~~~~~~V~~~e~nGl~~~~f------~l~--~~~~~~V~~laWSpDg-~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~ 316 (1323)
..|++|+.+.+..+.. ++. .-+...|..|+=-|+| ..+-++++|+ +++-+|+...|- .++...
T Consensus 117 ----k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDG---tirQyDiREph~-c~p~~~ 188 (758)
T KOG1310|consen 117 ----KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDG---TIRQYDIREPHV-CNPDED 188 (758)
T ss_pred ----ceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCc---ceeeecccCCcc-CCcccc
Confidence 4699999764322210 011 1234578889999999 7888999999 999999875442 122211
Q ss_pred Eec-------C--CcEEEEEccCCCcEEEEEecC
Q 000736 317 YLR-------R--DGIRFMWHPTKPLQLICWTLD 341 (1323)
Q Consensus 317 ~~~-------~--~~~~v~Wsp~~~~~L~~~~~~ 341 (1323)
.+. . +.-++.-+|..|..|+++..+
T Consensus 189 ~~~~l~ny~~~lielk~ltisp~rp~~laVGgsd 222 (758)
T KOG1310|consen 189 CPSILVNYNPQLIELKCLTISPSRPYYLAVGGSD 222 (758)
T ss_pred ccHHHHHhchhhheeeeeeecCCCCceEEecCCC
Confidence 111 1 114577889888888887654
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.6e-05 Score=90.49 Aligned_cols=169 Identities=17% Similarity=0.161 Sum_probs=103.3
Q ss_pred cEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCC--c--cEEEEeecCceeeeeeecccCCCceeccCccccCC
Q 000736 98 LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGF--G--QILVMTHDWDLLYENPLEELAEGFDVHEPELSSSF 173 (1323)
Q Consensus 98 ~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d--~--tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~ 173 (1323)
.+.+-|.++.....+..-...+...+|||||+.++..+-. + .+.+++..... .+.. + .|.+
T Consensus 174 ~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~-~~~i---------~---~~~g-- 238 (425)
T COG0823 174 ELALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGK-RPVI---------L---NFNG-- 238 (425)
T ss_pred eEEEEccCCcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCc-ccee---------e---ccCC--
Confidence 3444444432233344334567888999999999988421 1 24333221110 0010 0 1111
Q ss_pred CCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEE
Q 000736 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV 253 (1323)
Q Consensus 174 ~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~ 253 (1323)
.-...+|||||+++|.++.- .+...|.+.|..++++ ..+....+.-..-+|+|||+.|+.+++..+ ...|-
T Consensus 239 -~~~~P~fspDG~~l~f~~~r----dg~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G---~p~I~ 309 (425)
T COG0823 239 -NNGAPAFSPDGSKLAFSSSR----DGSPDIYLMDLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGG---RPQIY 309 (425)
T ss_pred -ccCCccCCCCCCEEEEEECC----CCCccEEEEcCCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCC---CcceE
Confidence 12457899999999954432 2446788889845543 334444455557899999999999988654 56788
Q ss_pred EEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEcc
Q 000736 254 FYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRF 293 (1323)
Q Consensus 254 ~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d 293 (1323)
..+.+|......+..... .. .-.|||||+.||..+..
T Consensus 310 ~~~~~g~~~~riT~~~~~--~~-~p~~SpdG~~i~~~~~~ 346 (425)
T COG0823 310 LYDLEGSQVTRLTFSGGG--NS-NPVWSPDGDKIVFESSS 346 (425)
T ss_pred EECCCCCceeEeeccCCC--Cc-CccCCCCCCEEEEEecc
Confidence 888888665544433221 12 67899999999998865
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0023 Score=78.45 Aligned_cols=130 Identities=14% Similarity=0.132 Sum_probs=81.5
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEeCCC-CeEEEeceecCcEEEEEEcCCC------------CeEEEEeCCccEEEEe
Q 000736 78 ITAFDYLMEKEALIVGTSSGLLLLHSVDG-NATEVVGRVEGGVRFISPSPDG------------DLLGVTTGFGQILVMT 144 (1323)
Q Consensus 78 V~~v~~spdg~~La~as~dG~I~lw~~~~-~~~e~vg~~~~~I~~~awSPDG------------~~LA~~s~d~tV~l~t 144 (1323)
-.++.|+|.| .+|-|+. .-|.+.|..+ +.+..+..|...|+.+.|+|-- =+||++.-.|.|.+|+
T Consensus 18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred ccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 5678899987 5566653 3566777665 4566778889999999998741 2567777788998875
Q ss_pred e-cCceeeeeeecccCCCceeccCccccCCCCeEEEE---EecCCc-EEEEeeccccccCCCCEEEEEECCCCceeeeec
Q 000736 145 H-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS---WRGDGK-YFATLSEFCNSSKLHKRLKVWERDSGTLQASSE 219 (1323)
Q Consensus 145 ~-~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~is---WspDG~-~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e 219 (1323)
- ..-.+... +.+.+.+..+. |++|.+ +|+.+. +..++-+||..+|++.....
T Consensus 96 ~~~~s~~~~l----------------~~~~~~~qdl~W~~~rd~Srd~LlaIh-------~ss~lvLwntdtG~k~Wk~~ 152 (1062)
T KOG1912|consen 96 FVLASVINWL----------------SHSNDSVQDLCWVPARDDSRDVLLAIH-------GSSTLVLWNTDTGEKFWKYD 152 (1062)
T ss_pred ehhhhhhhhh----------------cCCCcchhheeeeeccCcchheeEEec-------CCcEEEEEEccCCceeeccc
Confidence 2 11111111 12223344444 467774 444232 34799999999999888654
Q ss_pred cCCCceeEEEEcc
Q 000736 220 LKAFMGAVLEWMP 232 (1323)
Q Consensus 220 ~~~~~v~slawsP 232 (1323)
..+....++.+-|
T Consensus 153 ys~~iLs~f~~DP 165 (1062)
T KOG1912|consen 153 YSHEILSCFRVDP 165 (1062)
T ss_pred cCCcceeeeeeCC
Confidence 4333334455555
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0094 Score=67.19 Aligned_cols=229 Identities=16% Similarity=0.090 Sum_probs=132.4
Q ss_pred EEEEec-CCCEEEEEeCCCcEEEEeCCCCeEEEeceecCcEEEEEEc-CCCCeEEEEeCCccEEEEe-ecCc--eeeeee
Q 000736 80 AFDYLM-EKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPS-PDGDLLGVTTGFGQILVMT-HDWD--LLYENP 154 (1323)
Q Consensus 80 ~v~~sp-dg~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awS-PDG~~LA~~s~d~tV~l~t-~~~d--~~~e~~ 154 (1323)
++.|.+ +|..+.+-...|.|..|+..++....... .+...+++. |||.++ ++...+.. +++ ...+ .+....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~--~~~~G~~~~~~~g~l~-v~~~~~~~-~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL--PGPNGMAFDRPDGRLY-VADSGGIA-VVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES--SSEEEEEEECTTSEEE-EEETTCEE-EEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec--CCCceEEEEccCCEEE-EEEcCceE-EEecCCCcEEEEeecc
Confidence 567888 67777777789999999999987765432 237777888 775554 45555443 333 1111 111110
Q ss_pred ecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCC--CEEEEEECCCCceeeeeccCCCceeEEEEcc
Q 000736 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLH--KRLKVWERDSGTLQASSELKAFMGAVLEWMP 232 (1323)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d--~~IrVWd~~~G~l~~t~e~~~~~v~slawsP 232 (1323)
.. . ........+++.|||.+.++....... ... +.|..++. +|+.....+.... .+.|+|+|
T Consensus 80 ---~~-~---------~~~~~~ND~~vd~~G~ly~t~~~~~~~-~~~~~g~v~~~~~-~~~~~~~~~~~~~-pNGi~~s~ 143 (246)
T PF08450_consen 80 ---DG-G---------VPFNRPNDVAVDPDGNLYVTDSGGGGA-SGIDPGSVYRIDP-DGKVTVVADGLGF-PNGIAFSP 143 (246)
T ss_dssp ---TT-C---------SCTEEEEEEEE-TTS-EEEEEECCBCT-TCGGSEEEEEEET-TSEEEEEEEEESS-EEEEEEET
T ss_pred ---CC-C---------cccCCCceEEEcCCCCEEEEecCCCcc-ccccccceEEECC-CCeEEEEecCccc-ccceEECC
Confidence 00 0 011245789999999988744322111 111 56777888 4776555544332 48999999
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeCC--Ce--eEEEEEeccCC-CCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCC
Q 000736 233 SGANIAAVYDRKSENKCPSIVFYERN--GL--ERSSFDINEQI-DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1323)
Q Consensus 233 dG~lIAs~s~d~~~~~~~~V~~~e~n--Gl--~~~~f~l~~~~-~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~ 307 (1323)
||+.|..+... .+.|.-|+.+ +. .........+. .+..-.+++.++|.+.++....+ .|..++....
T Consensus 144 dg~~lyv~ds~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~---~I~~~~p~G~ 215 (246)
T PF08450_consen 144 DGKTLYVADSF-----NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGG---RIVVFDPDGK 215 (246)
T ss_dssp TSSEEEEEETT-----TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTT---EEEEEETTSC
T ss_pred cchheeecccc-----cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCC---EEEEECCCcc
Confidence 99987765543 3567666643 32 11111122121 12477899999999887766555 6888887742
Q ss_pred eeEEEeEEEEecCCcEEEEEccCCCcEEEEEe
Q 000736 308 HWYLKYEIRYLRRDGIRFMWHPTKPLQLICWT 339 (1323)
Q Consensus 308 ~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~ 339 (1323)
+...+..+...++.++|......+|.+.+
T Consensus 216 ---~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 216 ---LLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp ---EEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred ---EEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 34566665344488888544444566544
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00032 Score=84.08 Aligned_cols=188 Identities=12% Similarity=0.099 Sum_probs=126.7
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCeEE--Ee--ceecCcEEEEEE--------------------cCCCCeEEEEeCCccE
Q 000736 85 MEKEALIVGTSSGLLLLHSVDGNATE--VV--GRVEGGVRFISP--------------------SPDGDLLGVTTGFGQI 140 (1323)
Q Consensus 85 pdg~~La~as~dG~I~lw~~~~~~~e--~v--g~~~~~I~~~aw--------------------SPDG~~LA~~s~d~tV 140 (1323)
|-+.++|..+.||.+++|+...+++. .. .+..+.-.+..| |-|--.||.|+..|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 45678899999999999999776542 21 122333445555 2344567777777777
Q ss_pred EEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecc
Q 000736 141 LVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL 220 (1323)
Q Consensus 141 ~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~ 220 (1323)
.+.+-...-++-. +.++ .|++.+..+.|+.+-..|=|+ +++..|-.|+..+++.......
T Consensus 83 ~~ys~~~g~it~~-~st~------------~h~~~v~~~~~~~~~~ciyS~-------~ad~~v~~~~~~~~~~~~~~~~ 142 (541)
T KOG4547|consen 83 LLYSVAGGEITAK-LSTD------------KHYGNVNEILDAQRLGCIYSV-------GADLKVVYILEKEKVIIRIWKE 142 (541)
T ss_pred EEEEecCCeEEEE-EecC------------CCCCcceeeecccccCceEec-------CCceeEEEEecccceeeeeecc
Confidence 6654221111111 1111 477889999999988887733 2468999999989999998888
Q ss_pred CCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCee-EEEEEeccCCCCcEEEEEEccC-----CCe-eEEEEcc
Q 000736 221 KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE-RSSFDINEQIDSTVELLKWNCM-----SDL-LAAVVRF 293 (1323)
Q Consensus 221 ~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~-~~~f~l~~~~~~~V~~laWSpD-----g~~-LA~~~~d 293 (1323)
....+.+++.+|||..++++++ .|++|+.+... ...| ++ |.+.|..++|--+ |+. |.++...
T Consensus 143 ~~~~~~sl~is~D~~~l~~as~--------~ik~~~~~~kevv~~f--tg-h~s~v~t~~f~~~~~g~~G~~vLssa~~~ 211 (541)
T KOG4547|consen 143 QKPLVSSLCISPDGKILLTASR--------QIKVLDIETKEVVITF--TG-HGSPVRTLSFTTLIDGIIGKYVLSSAAAE 211 (541)
T ss_pred CCCccceEEEcCCCCEEEeccc--------eEEEEEccCceEEEEe--cC-CCcceEEEEEEEeccccccceeeeccccc
Confidence 8888999999999999999986 59999976432 2222 23 3567999999777 443 4444433
Q ss_pred CCCCeEEEEEeeC
Q 000736 294 EEYDSVKICFFSN 306 (1323)
Q Consensus 294 ~~~~~V~LW~~~n 306 (1323)
. .+-+|-+.+
T Consensus 212 r---~i~~w~v~~ 221 (541)
T KOG4547|consen 212 R---GITVWVVEK 221 (541)
T ss_pred c---ceeEEEEEc
Confidence 3 466666554
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00012 Score=88.19 Aligned_cols=80 Identities=16% Similarity=0.222 Sum_probs=66.1
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeee
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~ 154 (1323)
...|++.+++|+.+.|++|..||.|++||...+..... ...--.+.++|.|||..++++++.|.+.+|+..-.++.-..
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qL 337 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQL 337 (545)
T ss_pred CCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccceee
Confidence 56899999999999999999999999999887654433 22445788999999999999999999999887666665444
Q ss_pred e
Q 000736 155 L 155 (1323)
Q Consensus 155 l 155 (1323)
+
T Consensus 338 l 338 (545)
T PF11768_consen 338 L 338 (545)
T ss_pred c
Confidence 3
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0011 Score=73.90 Aligned_cols=199 Identities=12% Similarity=0.033 Sum_probs=103.5
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEE-------EeceecCcEEEEEEcCCC------CeEEEEeCCccE
Q 000736 74 PGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-------VVGRVEGGVRFISPSPDG------DLLGVTTGFGQI 140 (1323)
Q Consensus 74 ~~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e-------~vg~~~~~I~~~awSPDG------~~LA~~s~d~tV 140 (1323)
|...-.-++||||+..||.+.+.|+|.++|+.+..+- ..|.....|..+.|-+-- ..|.+.+-.|.+
T Consensus 42 ~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L 121 (282)
T PF15492_consen 42 PNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQL 121 (282)
T ss_pred CCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEecccee
Confidence 3457889999999999999999999999999874432 223334556666664321 112222333333
Q ss_pred EEEeecCceeeeeeecccCCCceeccCcccc-CCCCeEEEEEecCCcEEEEeeccccccCCCCE-------EEEEECCCC
Q 000736 141 LVMTHDWDLLYENPLEELAEGFDVHEPELSS-SFSFKSPISWRGDGKYFATLSEFCNSSKLHKR-------LKVWERDSG 212 (1323)
Q Consensus 141 ~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~-~~~~i~~isWspDG~~lAtvss~d~~~~~d~~-------IrVWd~~~G 212 (1323)
+- +-+ ...+....+.--.-+|.. ...+|.++.|.|.-+.|. |++... ..++. +..|-.
T Consensus 122 ~S----y~v----s~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLl-VgG~~~--~~~~~s~a~~~GLtaWRi--- 187 (282)
T PF15492_consen 122 RS----YLV----SVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLL-VGGCEQ--NQDGMSKASSCGLTAWRI--- 187 (282)
T ss_pred ee----EEE----EcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEE-EeccCC--CCCccccccccCceEEEE---
Confidence 11 110 000000000000001212 245889999999999888 776431 11111 112211
Q ss_pred ceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEc
Q 000736 213 TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVR 292 (1323)
Q Consensus 213 ~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~ 292 (1323)
+.=+|-.+.+.+..++-+ ....+-.||..-. -.-|.........|..|+.||||+.||+...
T Consensus 188 ---------------L~~~Pyyk~v~~~~~~~~-~~~~~~~~~~~~~--~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~ 249 (282)
T PF15492_consen 188 ---------------LSDSPYYKQVTSSEDDIT-ASSKRRGLLRIPS--FKFFSRQGQEQDGIFKMSLSPDGSLLACIHF 249 (282)
T ss_pred ---------------cCCCCcEEEccccCcccc-ccccccceeeccc--eeeeeccccCCCceEEEEECCCCCEEEEEEc
Confidence 111344444332222100 0000112222110 0011111223467999999999999999999
Q ss_pred cCCCCeEEEEEeeCC
Q 000736 293 FEEYDSVKICFFSNN 307 (1323)
Q Consensus 293 d~~~~~V~LW~~~n~ 307 (1323)
+| .|-||++-+.
T Consensus 250 sG---~lsLW~iPsL 261 (282)
T PF15492_consen 250 SG---SLSLWEIPSL 261 (282)
T ss_pred CC---eEEEEecCcc
Confidence 99 8999999763
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.035 Score=69.31 Aligned_cols=219 Identities=20% Similarity=0.265 Sum_probs=124.1
Q ss_pred CCCCCChhhHHHHHHHHHhhccHHHHHHHHHhccChhHHHHHHHHhcCCcccchHhHHHHhcC--Cchhcc--ccHHHHh
Q 000736 869 EPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESM--PPLLMR--YTIDLRL 944 (1323)
Q Consensus 869 ~~~~~~~~~ae~alk~l~~L~d~~~Ly~~ALg~yD~~lal~VAq~sqkDPkeYLpfL~~L~~l--~~~~~~--~~Id~~L 944 (1323)
++.+.++.--|-.|-+.++ +--.=|...+..|+-.|=-.-.+-+---| ++++- +...++ ++..-+-
T Consensus 449 ~~~rL~p~vYemvLve~L~--~~~~~F~e~i~~Wp~~Lys~l~iisa~~~--------q~~q~Se~~~L~e~La~LYl~d 518 (846)
T KOG2066|consen 449 GPPRLKPLVYEMVLVEFLA--SDVKGFLELIKEWPGHLYSVLTIISATEP--------QIKQNSESTALLEVLAHLYLYD 518 (846)
T ss_pred CCcccCchHHHHHHHHHHH--HHHHHHHHHHHhCChhhhhhhHHHhhcch--------HHHhhccchhHHHHHHHHHHHc
Confidence 3444445555666665555 44555777888888776221122221111 13322 112222 3444455
Q ss_pred cCHHHHHHHHHHcCCCcHHHHHHHHHHHhcchHHHHhhc-----CCcHHHHHHHHHH---------HHHHhcccCHHHHH
Q 000736 945 QRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAW---------ADHLSDVKCFEDAA 1010 (1323)
Q Consensus 945 ~rye~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~---------A~~L~~~~~~~eAa 1010 (1323)
++|++|+++|.++-. .++.+++++| .||+++.+.. -+.++.-.++..- =+.+++..+|.-+-
T Consensus 519 ~~Y~~Al~~ylklk~---~~vf~lI~k~-nL~d~i~~~Iv~Lmll~skka~~lLldn~d~ip~a~Vveql~~~P~~l~~Y 594 (846)
T KOG2066|consen 519 NKYEKALPIYLKLQD---KDVFDLIKKH-NLFDQIKDQIVLLMLLDSKKAIDLLLDNRDSISPSEVVEQLEDNPKLLYCY 594 (846)
T ss_pred cChHHHHHHHHhccC---hHHHHHHHHH-hhHHHHHHHHHHHHccchhhHHHHHhhccccCCHHHHHHHHhcChHHHHHH
Confidence 889999999999855 7889999999 9999887643 1221110000000 01122333322222
Q ss_pred HHHHhcCC-------HHHHHHHHHH------------hC--CHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHH
Q 000736 1011 TTYFCCSS-------LEKAMKAYRA------------SG--NWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEA 1069 (1323)
Q Consensus 1011 ~~y~~ag~-------~~kAl~~y~~------------ag--~W~~al~lA~~l~~~~~~~~~l~~~la~~L~~~~~~~eA 1069 (1323)
..+.---+ .+++++.|.+ .. +.+.|+.++.+.+ .+.++.=-|..+|...+|
T Consensus 595 L~kl~~rd~~~~~~y~dk~I~LYAEyDrk~LLPFLr~s~~Y~lekA~eiC~q~~--------~~~E~VYlLgrmGn~k~A 666 (846)
T KOG2066|consen 595 LHKLFKRDHFMGSEYHDKQIELYAEYDRKKLLPFLRKSQNYNLEKALEICSQKN--------FYEELVYLLGRMGNAKEA 666 (846)
T ss_pred HHHHhhcCccccchhhhHHHHHHHHHhHhhhhHHHHhcCCCCHHHHHHHHHhhC--------cHHHHHHHHHhhcchHHH
Confidence 22221111 1344444432 22 4788888887654 455666667788999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhc---CHHHHHHHHHhcCCchhHHH
Q 000736 1070 AKIALDYCGDVTNGISLLIDAR---DWEEALRVAFMHRREDLITK 1111 (1323)
Q Consensus 1070 a~i~~~yl~d~e~Av~~~i~~~---~w~eA~rla~~~~~~dLie~ 1111 (1323)
-.+-.+-++|+++||+.+.+.+ .|++-+-....+ |+.+..
T Consensus 667 L~lII~el~die~AIefvKeq~D~eLWe~LI~~~ldk--Pe~~~~ 709 (846)
T KOG2066|consen 667 LKLIINELRDIEKAIEFVKEQDDSELWEDLINYSLDK--PEFIKA 709 (846)
T ss_pred HHHHHHHhhCHHHHHHHHHhcCCHHHHHHHHHHhhcC--cHHHHH
Confidence 8888777999999999887554 588877654443 455443
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0014 Score=74.15 Aligned_cols=236 Identities=12% Similarity=0.054 Sum_probs=152.7
Q ss_pred eEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEe
Q 000736 24 QFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHS 103 (1323)
Q Consensus 24 ~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~ 103 (1323)
.+...-+-.+.|+.+|+|..+..|--- .+++- |.. +. + .. ...++++.|.++...|.+|-.+|++.-+.
T Consensus 28 n~~~l~~~e~gv~~~s~drtvrv~lkr-ds~q~-wps------I~-~-~m-P~~~~~~~y~~e~~~L~vg~~ngtvtefs 96 (404)
T KOG1409|consen 28 NAAILIPKEEGVISVSEDRTVRVWLKR-DSGQY-WPS------IY-H-YM-PSPCSAMEYVSESRRLYVGQDNGTVTEFA 96 (404)
T ss_pred hhheeccCCCCeEEccccceeeeEEec-ccccc-Cch------hh-h-hC-CCCceEeeeeccceEEEEEEecceEEEEE
Confidence 333344556778888988877666321 12221 110 11 0 11 35789999999999999999999999887
Q ss_pred CCC--Ce---EEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe-ecCceeeeeeecccCCCceeccCccccCCCCeE
Q 000736 104 VDG--NA---TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1323)
Q Consensus 104 ~~~--~~---~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~ 177 (1323)
... .+ +..--.|...|.++-|+---+++++.+.|..+.-.. +...-+... .
T Consensus 97 ~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y-----------------------~ 153 (404)
T KOG1409|consen 97 LSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGY-----------------------N 153 (404)
T ss_pred hhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccce-----------------------E
Confidence 753 11 223345788899999999999999999998774322 111111111 1
Q ss_pred EEEEecCCcEEE---EeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEE
Q 000736 178 PISWRGDGKYFA---TLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1323)
Q Consensus 178 ~isWspDG~~lA---tvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~ 254 (1323)
-++|--+-++.+ .++-.. +.-...|+... .-.+..+..+|.+.+.+++|-|-..++-|+..| +.|..
T Consensus 154 ~~~~~t~~~~d~~~~fvGd~~---gqvt~lr~~~~-~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d------~~vi~ 223 (404)
T KOG1409|consen 154 FETPASALQFDALYAFVGDHS---GQITMLKLEQN-GCQLITTFNGHTGEVTCLKWDPGQRLLFSGASD------HSVIM 223 (404)
T ss_pred eeccCCCCceeeEEEEecccc---cceEEEEEeec-CCceEEEEcCcccceEEEEEcCCCcEEEecccc------CceEE
Confidence 111211222222 122111 11123455544 667888899999999999999999999999875 57999
Q ss_pred EeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCC
Q 000736 255 YERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1323)
Q Consensus 255 ~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~ 307 (1323)
|+.-|.+-..+.+.++ ...|..+..-+--+.|.++..|+ .|-+|++++.
T Consensus 224 wdigg~~g~~~el~gh-~~kV~~l~~~~~t~~l~S~~edg---~i~~w~mn~~ 272 (404)
T KOG1409|consen 224 WDIGGRKGTAYELQGH-NDKVQALSYAQHTRQLISCGEDG---GIVVWNMNVK 272 (404)
T ss_pred EeccCCcceeeeeccc-hhhhhhhhhhhhheeeeeccCCC---eEEEEeccce
Confidence 9986654333334333 34677777777788899999998 8999999863
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0024 Score=76.19 Aligned_cols=246 Identities=13% Similarity=0.104 Sum_probs=126.9
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEece---------e---------cCcEEEEEEcCCCCeEEEEeCC
Q 000736 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGR---------V---------EGGVRFISPSPDGDLLGVTTGF 137 (1323)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e~vg~---------~---------~~~I~~~awSPDG~~LA~~s~d 137 (1323)
..+....|||||+.+|.+. +++|.+++..++....+.. . -+.-.++-|||||+.||...-|
T Consensus 43 ~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 43 PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred cccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence 5688999999999999886 6899999987654321111 0 0112467899999999999654
Q ss_pred c-cEEEEee-----cCc--eeeeeeecccC-CC-ceec-------cC---------ccccCCCCeEEEEEecCCcEEEEe
Q 000736 138 G-QILVMTH-----DWD--LLYENPLEELA-EG-FDVH-------EP---------ELSSSFSFKSPISWRGDGKYFATL 191 (1323)
Q Consensus 138 ~-tV~l~t~-----~~d--~~~e~~l~~~~-~~-~~Vs-------~t---------qf~~~~~~i~~isWspDG~~lAtv 191 (1323)
. .|..+.. ... |.....-.+.. +. -.|. .. .+...+.-+..+.|++||+.|+ +
T Consensus 122 ~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~-~ 200 (353)
T PF00930_consen 122 EREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW-V 200 (353)
T ss_dssp -TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE-E
T ss_pred CcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE-E
Confidence 3 3433321 100 01100000100 00 0010 00 0113456789999999999555 3
Q ss_pred eccccccCCCCEEEEEECCCCceeeee-ccCCCce---eEEEEc-cCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEE
Q 000736 192 SEFCNSSKLHKRLKVWERDSGTLQASS-ELKAFMG---AVLEWM-PSGANIAAVYDRKSENKCPSIVFYERNGLERSSFD 266 (1323)
Q Consensus 192 ss~d~~~~~d~~IrVWd~~~G~l~~t~-e~~~~~v---~slaws-PdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~ 266 (1323)
...+.. .....+.++|..+|...... +..++++ ....|. |+|..+.-.+...+ -..|.+++.+|.....
T Consensus 201 ~~~nR~-q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G---~~hly~~~~~~~~~~~-- 274 (353)
T PF00930_consen 201 QWLNRD-QNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDG---YRHLYLYDLDGGKPRQ-- 274 (353)
T ss_dssp EEEETT-STEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTS---SEEEEEEETTSSEEEE--
T ss_pred EEcccC-CCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCC---CcEEEEEcccccceec--
Confidence 332211 12245677788777664432 2344444 356665 88887766555221 4567777877654332
Q ss_pred eccCCCCcEE-EEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEE-ecCCc--EEEEEccCCCc
Q 000736 267 INEQIDSTVE-LLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRY-LRRDG--IRFMWHPTKPL 333 (1323)
Q Consensus 267 l~~~~~~~V~-~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~-~~~~~--~~v~Wsp~~~~ 333 (1323)
|. .+.-.|. -+.|+++++.|...+.......-+||.++-. -..++.. ..... ..+.|||++..
T Consensus 275 lT-~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~---~~~~~~~LT~~~~~~~~~~~Spdg~y 341 (353)
T PF00930_consen 275 LT-SGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD---SGGEPKCLTCEDGDHYSASFSPDGKY 341 (353)
T ss_dssp SS--SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT---ETTEEEESSTTSSTTEEEEE-TTSSE
T ss_pred cc-cCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC---CCCCeEeccCCCCCceEEEECCCCCE
Confidence 22 2334564 4889999887765554321112455555422 0011111 11222 47778887765
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0062 Score=81.82 Aligned_cols=29 Identities=14% Similarity=0.283 Sum_probs=22.8
Q ss_pred chhhhHHHHHHHHhcccHHHHHHH---HHhcc
Q 000736 705 PRKLVLTSIVNALIQGRFRDALVM---VRRHR 733 (1323)
Q Consensus 705 PR~lvL~~i~~~l~~~~y~~Af~~---~R~hR 733 (1323)
+.+..+..+..+++.+++.+|+.+ |.+..
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~g 400 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRG 400 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCC
Confidence 477888889999999999999766 55544
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0027 Score=77.92 Aligned_cols=151 Identities=17% Similarity=0.212 Sum_probs=99.0
Q ss_pred eEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCC-----------C-eEEEEecC
Q 000736 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG-----------A-NIAAVYDR 243 (1323)
Q Consensus 176 i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG-----------~-lIAs~s~d 243 (1323)
...+.|+|.| .|| -++. ..|-|-|..+-+++++.+.|...|.++.|.|-- . +||++..
T Consensus 18 ~~A~Dw~~~G-LiA-ygsh-------slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~- 87 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIA-YGSH-------SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADI- 87 (1062)
T ss_pred ccccccCccc-eEE-EecC-------ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccc-
Confidence 5788999988 677 4442 578888887999999999999999999998731 2 4566544
Q ss_pred CCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEE---ccCC-CeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEe
Q 000736 244 KSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKW---NCMS-DLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYL 318 (1323)
Q Consensus 244 ~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laW---SpDg-~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~ 318 (1323)
.+.|.+||-- +-..-. + .++...|..+.| -+|+ .+|+.-.... +|-||++.++.-.-|+...
T Consensus 88 -----~GrIil~d~~~~s~~~~--l-~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss---~lvLwntdtG~k~Wk~~ys-- 154 (1062)
T KOG1912|consen 88 -----SGRIILVDFVLASVINW--L-SHSNDSVQDLCWVPARDDSRDVLLAIHGSS---TLVLWNTDTGEKFWKYDYS-- 154 (1062)
T ss_pred -----cCcEEEEEehhhhhhhh--h-cCCCcchhheeeeeccCcchheeEEecCCc---EEEEEEccCCceeeccccC--
Confidence 3568888831 111111 1 122344556665 5677 5666665555 8999987765433343221
Q ss_pred cCCc-EEEEEccCCCcEEEEEecCCcEEEEEEE
Q 000736 319 RRDG-IRFMWHPTKPLQLICWTLDGQITTYNFI 350 (1323)
Q Consensus 319 ~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~ 350 (1323)
... .++.+||=.+..+.+.+..|.+...++.
T Consensus 155 -~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l 186 (1062)
T KOG1912|consen 155 -HEILSCFRVDPFDSRHFCVLGSKGFVLSCKDL 186 (1062)
T ss_pred -CcceeeeeeCCCCcceEEEEccCceEEEEecc
Confidence 233 5588999888888888877766655443
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00042 Score=76.86 Aligned_cols=304 Identities=12% Similarity=0.143 Sum_probs=159.2
Q ss_pred cCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCC------------CCeEEEEEec
Q 000736 116 EGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSF------------SFKSPISWRG 183 (1323)
Q Consensus 116 ~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~------------~~i~~isWsp 183 (1323)
.+-|+++.|-.-|.+||+|..-|.|.++.+.-. .+. +.++. |.||+|+ ..|..|.|-.
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s--~~c------eykf~--teFQshe~EFDYLkSleieEKin~I~w~~ 95 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKS--YGC------EYKFF--TEFQSHELEFDYLKSLEIEEKINAIEWFD 95 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccc--ccc------chhhh--hhhcccccchhhhhhccHHHHhhheeeec
Confidence 356999999999999999888899988754311 110 12222 2233222 3678899988
Q ss_pred CCc--EEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCC-CC--CCCeEEEEeCC
Q 000736 184 DGK--YFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKS-EN--KCPSIVFYERN 258 (1323)
Q Consensus 184 DG~--~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~-~~--~~~~V~~~e~n 258 (1323)
|++ .|. ++ +.+++||+|-..+-.+.-..+ ..+..++. +|-|--+.|.+.-.- +- ..--|....+
T Consensus 96 ~t~r~hFL-ls------tNdktiKlWKiyeknlk~va~--nnls~~~~-~~~~g~~~s~~~l~lprls~hd~iiaa~p~- 164 (460)
T COG5170 96 DTGRNHFL-LS------TNDKTIKLWKIYEKNLKVVAE--NNLSDSFH-SPMGGPLTSTKELLLPRLSEHDEIIAAKPC- 164 (460)
T ss_pred CCCcceEE-Ee------cCCceeeeeeeecccchhhhc--cccccccc-cccCCCcCCHHHhhcccccccceEEEeccc-
Confidence 775 233 34 357999999874443322222 11112222 233322222211000 00 0001111111
Q ss_pred CeeEEEEEec-cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCe-eEEEeEEEEec----CCc-EEEEEccCC
Q 000736 259 GLERSSFDIN-EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH-WYLKYEIRYLR----RDG-IRFMWHPTK 331 (1323)
Q Consensus 259 Gl~~~~f~l~-~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~-wylkq~l~~~~----~~~-~~v~Wsp~~ 331 (1323)
.+. ..+...+++|+++.|-+.+.++..-+ |-||...--. .+-.-.+.-+. ... ++..|||+.
T Consensus 165 -------rvyaNaH~yhiNSiS~NsD~et~lSaDdLr----INLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~ 233 (460)
T COG5170 165 -------RVYANAHPYHINSISFNSDKETLLSADDLR----INLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEM 233 (460)
T ss_pred -------eeccccceeEeeeeeecCchheeeecccee----eeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhH
Confidence 011 12345799999999999999886655 9999986321 11000111110 123 677899998
Q ss_pred CcEEEEEecCCcEEEEEEEEeeeeCCCe--eEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEE
Q 000736 332 PLQLICWTLDGQITTYNFIWTTAVMENS--TALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLA 409 (1323)
Q Consensus 332 ~~~L~~~~~~g~~~~~~~~~~~~~~d~~--~v~viDg~~l~lt~l~~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LA 409 (1323)
...++..+..|.+...+..-+.-++... ...-+||-.+ ..+ -+.-+.|.++-||++| ..++
T Consensus 234 cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~--------------~ff-~eivsSISD~kFs~ng--ryIl 296 (460)
T COG5170 234 CNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDV--------------DFF-EEIVSSISDFKFSDNG--RYIL 296 (460)
T ss_pred cceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccc--------------hhH-HHHhhhhcceEEcCCC--cEEE
Confidence 8877777777877654433211111100 0011222110 000 0234578899999999 7777
Q ss_pred EEECCCcEEEEECCCCC-ccccccCCceeEeeecc------ccccCcE---EEEEEecCCeEEEEEecCCCCeeEEEE
Q 000736 410 AILSDGCLCVVDLPAPD-MLEDLEGTEFVVEACIS------ETAFGSV---IHLIWLGSHLLLSVSHHGPRHSNYFRG 477 (1323)
Q Consensus 410 s~s~Dgti~lw~~~~~~-~~~~~~g~~~~~~~~~~------~~~~~~v---~~l~~~~d~~lla~~~~~~~~~~~~~~ 477 (1323)
+-+. .+|+||++.-.. ++.+ +.+. +.. ..+.+.+ ..+.|+.|+..+.++++. +..-++-
T Consensus 297 sRdy-ltvkiwDvnm~k~pikT-----i~~h-~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~--NNfgiyp 365 (460)
T COG5170 297 SRDY-LTVKIWDVNMAKNPIKT-----IPMH-CDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYS--NNFGIYP 365 (460)
T ss_pred Eecc-ceEEEEecccccCCcee-----echH-HHHHHHHHhhhhccceeeeEEEEecCCcccccccccc--cceeeec
Confidence 6644 499999986422 2211 1111 110 1122322 457899999998888874 3444443
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00019 Score=79.43 Aligned_cols=216 Identities=18% Similarity=0.198 Sum_probs=133.1
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe-EE-----Eece------------ecCcEEEEEEcCCCC--eEEEE
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-TE-----VVGR------------VEGGVRFISPSPDGD--LLGVT 134 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~-~e-----~vg~------------~~~~I~~~awSPDG~--~LA~~ 134 (1323)
.+.|++|.|--.|.+|++|-..|.|.++..+... +| .+.+ +...|+.+.|--|+. .....
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4689999999999999999999999999865311 11 1111 245689999988765 36667
Q ss_pred eCCccEEEEe---ecCceeeeeeecccC---CCceec------cCccc----------------cCCCCeEEEEEecCCc
Q 000736 135 TGFGQILVMT---HDWDLLYENPLEELA---EGFDVH------EPELS----------------SSFSFKSPISWRGDGK 186 (1323)
Q Consensus 135 s~d~tV~l~t---~~~d~~~e~~l~~~~---~~~~Vs------~tqf~----------------~~~~~i~~isWspDG~ 186 (1323)
+.|.||++|. +.-.++.+-.+...- -+++++ ..+.. .|.-.+.+|++..|-+
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 8899999994 333333333322111 122332 11111 4666788999999999
Q ss_pred EEEEeeccccccCCCCEEEEEECC--CCceee-eeccCC-----CceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000736 187 YFATLSEFCNSSKLHKRLKVWERD--SGTLQA-SSELKA-----FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1323)
Q Consensus 187 ~lAtvss~d~~~~~d~~IrVWd~~--~G~l~~-t~e~~~-----~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~n 258 (1323)
++. ++ .+=+|-+|+.+ +|..-- --.|+. ..+++--|+|.-..+-.-+.. ++.|++.+..
T Consensus 186 t~l-Sa-------DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsS-----kG~Ikl~DlR 252 (460)
T COG5170 186 TLL-SA-------DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSS-----KGEIKLNDLR 252 (460)
T ss_pred eee-ec-------cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecC-----CCcEEehhhh
Confidence 998 43 24689999984 222111 112332 235778899976544322221 3568877631
Q ss_pred --Ce---eEEEEEeccC---------CCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCC
Q 000736 259 --GL---ERSSFDINEQ---------IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1323)
Q Consensus 259 --Gl---~~~~f~l~~~---------~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~ 307 (1323)
.+ ....|.+... ....|..+.|||+|+++++.... +|+|||+++-
T Consensus 253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl----tvkiwDvnm~ 311 (460)
T COG5170 253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL----TVKIWDVNMA 311 (460)
T ss_pred hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc----eEEEEecccc
Confidence 10 0111111110 12468889999999999998665 6999999764
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00026 Score=82.82 Aligned_cols=287 Identities=11% Similarity=-0.026 Sum_probs=163.1
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeE--EEeceecCcEEEEEEcCC--CCeEEEEeCCccEEEEeecCcee
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT--EVVGRVEGGVRFISPSPD--GDLLGVTTGFGQILVMTHDWDLL 150 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~--e~vg~~~~~I~~~awSPD--G~~LA~~s~d~tV~l~t~~~d~~ 150 (1323)
.+.|..|.|...|..||++|.|-.|.+||...+.. ...+.|...|....|=|. -..|++.+.||+|.+-... .
T Consensus 142 ~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~---~ 218 (559)
T KOG1334|consen 142 KGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEIL---E 218 (559)
T ss_pred CCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeec---c
Confidence 58999999999999999999999999999876543 344556677777777553 4789999999999663211 0
Q ss_pred eeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeee--eccCC-C---c
Q 000736 151 YENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS--SELKA-F---M 224 (1323)
Q Consensus 151 ~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t--~e~~~-~---~ 224 (1323)
++..-.+ + ....|.+.+..++--|+..+-.-++ ++|+.++-.|+..+..-.. .+.++ . .
T Consensus 219 t~~~e~t----~-----rl~~h~g~vhklav~p~sp~~f~S~------geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~ 283 (559)
T KOG1334|consen 219 TGYVENT----K-----RLAPHEGPVHKLAVEPDSPKPFLSC------GEDAVVFHIDLRQDVPAEKFVCREADEKERVG 283 (559)
T ss_pred ccceecc----e-----ecccccCccceeeecCCCCCccccc------ccccceeeeeeccCCccceeeeeccCCcccee
Confidence 0000000 0 0113556677888888775432122 3568888777755543222 22222 2 2
Q ss_pred eeEEEEccCCC-eEEEEecCCCCCCCCeEEEEeC--------CCeeEEEEEec---cCCCCcEEEEEEccC-CCeeEEEE
Q 000736 225 GAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYER--------NGLERSSFDIN---EQIDSTVELLKWNCM-SDLLAAVV 291 (1323)
Q Consensus 225 v~slawsPdG~-lIAs~s~d~~~~~~~~V~~~e~--------nGl~~~~f~l~---~~~~~~V~~laWSpD-g~~LA~~~ 291 (1323)
..+|+-.|... .+|+++.|. -+++|+. ||.. ..|.-+ ......|..+++|.| |++||+..
T Consensus 284 L~~Ia~~P~nt~~faVgG~dq------f~RvYD~R~~~~e~~n~~~-~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn 356 (559)
T KOG1334|consen 284 LYTIAVDPRNTNEFAVGGSDQ------FARVYDQRRIDKEENNGVL-DKFCPHHLVEDDPVNITGLVYSHDGSELLASYN 356 (559)
T ss_pred eeeEecCCCCccccccCChhh------hhhhhcccchhhccccchh-hhcCCccccccCcccceeEEecCCccceeeeec
Confidence 37889999775 788887652 3555552 2211 122211 122356999999955 55666665
Q ss_pred ccCCCCeEEEEEeeCCe------------eEEEeEEEEecCCcE--EE-EEccCCCcEEEEEecCCcEEEEEEEEeeeeC
Q 000736 292 RFEEYDSVKICFFSNNH------------WYLKYEIRYLRRDGI--RF-MWHPTKPLQLICWTLDGQITTYNFIWTTAVM 356 (1323)
Q Consensus 292 ~d~~~~~V~LW~~~n~~------------wylkq~l~~~~~~~~--~v-~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~ 356 (1323)
... |.|++. ++. -|.|+....|.+..+ .+ -|-|..
T Consensus 357 De~----IYLF~~-~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs------------------------- 406 (559)
T KOG1334|consen 357 DED----IYLFNK-SMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS------------------------- 406 (559)
T ss_pred ccc----eEEecc-ccccCCCCCCCcchhhccchhhcccccccccceeeeccCcc-------------------------
Confidence 544 888743 221 122332222222110 01 122221
Q ss_pred CCeeEEEEeCCEEEEeecCCcCCCCCceeeeecC-CCCEEEEEEecCCCCCEEEEEECCCcEEEEECCC
Q 000736 357 ENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKF-PTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1323)
Q Consensus 357 d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~~-~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~ 424 (1323)
.-+|.-.|=.+|.+|+=+.+-+-. -++. ..-|+|+-=+|-- ..||+.+-|..|+||..-+
T Consensus 407 -EyVvSGSDCGhIFiW~K~t~eii~-----~MegDr~VVNCLEpHP~~--PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 407 -EYVVSGSDCGHIFIWDKKTGEIIR-----FMEGDRHVVNCLEPHPHL--PVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred -ceEEecCccceEEEEecchhHHHH-----HhhcccceEeccCCCCCC--chhhccCCccceeeecCCc
Confidence 122233344455555543321100 0111 2246788766666 7899999999999998744
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0042 Score=68.21 Aligned_cols=226 Identities=10% Similarity=-0.025 Sum_probs=128.5
Q ss_pred CEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEe
Q 000736 33 NRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVV 112 (1323)
Q Consensus 33 ~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e~v 112 (1323)
++|+.+...+++-.|.+ .++++...+... ...+..+. ..+-. ..--+-+++.|.|+++..++++.....
T Consensus 85 ~~la~gG~~g~fd~~~~--~tn~~h~~~cd~--snn~v~~~--~r~cd-----~~~~~~i~sndht~k~~~~~~~s~~~~ 153 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFAC--NTNDGHLYQCDV--SNNDVTLV--KRYCD-----LKFPLNIASNDHTGKTMVVSGDSNKFA 153 (344)
T ss_pred cEEEeccccceeeeecc--cCcccceeeecc--cccchhhh--hhhcc-----cccceeeccCCcceeEEEEecCcccce
Confidence 44555556666777877 455554443211 11111010 01101 112355778899999988876544322
Q ss_pred ceec-CcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEe
Q 000736 113 GRVE-GGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATL 191 (1323)
Q Consensus 113 g~~~-~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtv 191 (1323)
-+.. -.++.++.|||++++++++....|-.+..+-+. +..... ...+..+.-.+.+|+.....|| +
T Consensus 154 ~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~s--ey~~~~----------~~a~t~D~gF~~S~s~~~~~FA-v 220 (344)
T KOG4532|consen 154 VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDES--EYIENI----------YEAPTSDHGFYNSFSENDLQFA-V 220 (344)
T ss_pred eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCcc--ceeeee----------EecccCCCceeeeeccCcceEE-E
Confidence 2222 348899999999999999998888776433221 111110 0001224447899999999999 7
Q ss_pred eccccccCCCCEEEEEECCC-Cceeee----eccCCCceeEEEEccCCCe--EEEEecCCCCCCCCeEEEEe-CCCeeEE
Q 000736 192 SEFCNSSKLHKRLKVWERDS-GTLQAS----SELKAFMGAVLEWMPSGAN--IAAVYDRKSENKCPSIVFYE-RNGLERS 263 (1323)
Q Consensus 192 ss~d~~~~~d~~IrVWd~~~-G~l~~t----~e~~~~~v~slawsPdG~l--IAs~s~d~~~~~~~~V~~~e-~nGl~~~ 263 (1323)
++ .|+++-|||.+. +.+..+ -..|.|.+..+-|+|-|.+ |--+ .. -.-+.+.| ||+..+.
T Consensus 221 ~~------Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~s-Eh-----fs~~hv~D~R~~~~~q 288 (344)
T KOG4532|consen 221 VF------QDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFIS-EH-----FSRVHVVDTRNYVNHQ 288 (344)
T ss_pred Ee------cCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEe-cC-----cceEEEEEcccCceee
Confidence 74 468999999753 333221 2347889999999997652 2222 21 13466666 6666665
Q ss_pred EEEec-----cCCCCcEEEEEEccCCCeeEEEEccC
Q 000736 264 SFDIN-----EQIDSTVELLKWNCMSDLLAAVVRFE 294 (1323)
Q Consensus 264 ~f~l~-----~~~~~~V~~laWSpDg~~LA~~~~d~ 294 (1323)
...++ .|.+..|..-.|+.+++-.-+..++.
T Consensus 289 ~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~ 324 (344)
T KOG4532|consen 289 VIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ 324 (344)
T ss_pred EEecCccccccccccccccccccCCCcccccccchh
Confidence 44333 12223355566666665555554443
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00056 Score=78.83 Aligned_cols=120 Identities=21% Similarity=0.239 Sum_probs=82.2
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEE---EeCCCCeE-EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeee
Q 000736 77 SITAFDYLMEKEALIVGTSSGLLLL---HSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYE 152 (1323)
Q Consensus 77 ~V~~v~~spdg~~La~as~dG~I~l---w~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e 152 (1323)
...++.|..+.....++-..|++.. |+...+.. .++|| -.-++.++||||++.|.++..|+.|++- |-+..
T Consensus 109 ~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lGh-vSml~dVavS~D~~~IitaDRDEkIRvs---~ypa~- 183 (390)
T KOG3914|consen 109 RPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILGH-VSMLLDVAVSPDDQFIITADRDEKIRVS---RYPAT- 183 (390)
T ss_pred CcceeeeeeccceEEEEeecCCceeeeeecccccCcchhhhh-hhhhheeeecCCCCEEEEecCCceEEEE---ecCcc-
Confidence 4566667777766666666666554 55553444 47886 6789999999999999999999999763 22110
Q ss_pred eeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeec
Q 000736 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE 219 (1323)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e 219 (1323)
..+ ++-+.||...|.+++-- |++.|. +| +||+++|+||..+|+++.+++
T Consensus 184 f~I----------esfclGH~eFVS~isl~-~~~~Ll-S~------sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 184 FVI----------ESFCLGHKEFVSTISLT-DNYLLL-SG------SGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred cch----------hhhccccHhheeeeeec-cCceee-ec------CCCCcEEEEecccCCcccccc
Confidence 000 11122566677788765 566677 44 468999999999999887764
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00088 Score=78.55 Aligned_cols=253 Identities=12% Similarity=0.099 Sum_probs=155.8
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEec--CCCEEEEEeCCCcE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM--EKEALIVGTSSGLL 99 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~sp--dg~~La~as~dG~I 99 (1323)
-+..+-|...|+.|.++|+|.+++.||- ..... +...+++ | ...|---.|.| +.+.|++.+.||.|
T Consensus 144 cVntV~FN~~Gd~l~SgSDD~~vv~WdW--~~~~~---~l~f~SG---H----~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 144 CVNTVHFNQRGDVLASGSDDLQVVVWDW--VSGSP---KLSFESG---H----CNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred ccceeeecccCceeeccCccceEEeehh--hccCc---ccccccc---c----ccchhhhhccCCCCCcCceeccccCce
Confidence 5667789999999999999999999998 44432 2222222 1 11233333555 34788999999999
Q ss_pred EEEeCC-CCeE---EEeceecCcEEEEEEcCCC-CeEEEEeCCccEEEEeecCceeee-----------------eeecc
Q 000736 100 LLHSVD-GNAT---EVVGRVEGGVRFISPSPDG-DLLGVTTGFGQILVMTHDWDLLYE-----------------NPLEE 157 (1323)
Q Consensus 100 ~lw~~~-~~~~---e~vg~~~~~I~~~awSPDG-~~LA~~s~d~tV~l~t~~~d~~~e-----------------~~l~~ 157 (1323)
++=.+. ++.+ ..++.|.+.|.-++.-|+. .-+.++++|+.|.-.+..-+..++ +..++
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 986553 3433 3678889999999998886 457778888887643311111111 00000
Q ss_pred cCCCc-eec-cCccc---------------------c------CCCCeEEEEEecCC-cEEEEeeccccccCCCCEEEEE
Q 000736 158 LAEGF-DVH-EPELS---------------------S------SFSFKSPISWRGDG-KYFATLSEFCNSSKLHKRLKVW 207 (1323)
Q Consensus 158 ~~~~~-~Vs-~tqf~---------------------~------~~~~i~~isWspDG-~~lAtvss~d~~~~~d~~IrVW 207 (1323)
..... .|. ..||. + ....|+++++|.|| .+|| +.. |-.|.++
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLa--SYn------De~IYLF 363 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLA--SYN------DEDIYLF 363 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceee--eec------ccceEEe
Confidence 00000 010 12222 1 22478999999665 5666 332 3568888
Q ss_pred ECC--CCc----------eeee-eccCCC--ceeEE-EEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCC
Q 000736 208 ERD--SGT----------LQAS-SELKAF--MGAVL-EWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQI 271 (1323)
Q Consensus 208 d~~--~G~----------l~~t-~e~~~~--~v~sl-awsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~ 271 (1323)
+.. .|. .... ..+|.. .|..+ =|-|...++.||++ ++.|-||++++-.+-.| +.+ .
T Consensus 364 ~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSD------CGhIFiW~K~t~eii~~-Meg-D 435 (559)
T KOG1334|consen 364 NKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSD------CGHIFIWDKKTGEIIRF-MEG-D 435 (559)
T ss_pred ccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCc------cceEEEEecchhHHHHH-hhc-c
Confidence 653 341 1111 233332 23333 37899999999998 67799999876443221 112 2
Q ss_pred CCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee
Q 000736 272 DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1323)
Q Consensus 272 ~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~ 305 (1323)
...|++|.=.|-=-+||+.+-|. -||||+-.
T Consensus 436 r~VVNCLEpHP~~PvLAsSGid~---DVKIWTP~ 466 (559)
T KOG1334|consen 436 RHVVNCLEPHPHLPVLASSGIDH---DVKIWTPL 466 (559)
T ss_pred cceEeccCCCCCCchhhccCCcc---ceeeecCC
Confidence 23688998888888999998887 79999974
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.001 Score=76.42 Aligned_cols=162 Identities=12% Similarity=0.062 Sum_probs=115.4
Q ss_pred cCCCEEEEEeCC--CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecC--CCEEEEEeCCCcEEEEeCC
Q 000736 30 IEQNRLFFASSA--NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLME--KEALIVGTSSGLLLLHSVD 105 (1323)
Q Consensus 30 ~~~~~l~~~s~~--~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spd--g~~La~as~dG~I~lw~~~ 105 (1323)
.+-.++.++... +.+..||+ .+.+-.|+-.-+|.+.-+. .-.-.++++.|.|. ...+|+++.-|.+++||..
T Consensus 159 ~~p~Iva~GGke~~n~lkiwdl--e~~~qiw~aKNvpnD~L~L--rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~ 234 (412)
T KOG3881|consen 159 TDPYIVATGGKENINELKIWDL--EQSKQIWSAKNVPNDRLGL--RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTR 234 (412)
T ss_pred CCCceEecCchhcccceeeeec--ccceeeeeccCCCCccccc--eeeeeeccceecCCCCCceEEEEecceeEEEecCc
Confidence 334556666666 56788999 5555556665555542111 01237889999998 8999999999999999998
Q ss_pred CCe--EEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEec
Q 000736 106 GNA--TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG 183 (1323)
Q Consensus 106 ~~~--~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWsp 183 (1323)
.++ +..+..-+.+|.++..-|+|++|.+|..-+.+.. ||.-....+.. .|++..+.+.+|.-.|
T Consensus 235 ~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~----FD~r~~kl~g~----------~~kg~tGsirsih~hp 300 (412)
T KOG3881|consen 235 HQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAK----FDLRGGKLLGC----------GLKGITGSIRSIHCHP 300 (412)
T ss_pred ccCcceeEeccccCcceeeeecCCCcEEEEecccchhhe----ecccCceeecc----------ccCCccCCcceEEEcC
Confidence 754 3344444788999999999999999998888854 44433322211 1335567889999999
Q ss_pred CCcEEEEeeccccccCCCCEEEEEECCCCceee
Q 000736 184 DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA 216 (1323)
Q Consensus 184 DG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~ 216 (1323)
.++++| +.+. ||-+||+|..+-++++
T Consensus 301 ~~~~la-s~GL------DRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 301 THPVLA-SCGL------DRYVRIHDIKTRKLLH 326 (412)
T ss_pred CCceEE-eecc------ceeEEEeecccchhhh
Confidence 999999 5544 5999999997755543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0021 Score=80.08 Aligned_cols=139 Identities=16% Similarity=0.247 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHhcchHHHHhhc----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhcC---CHHHHHHHHHHhCCHHH
Q 000736 962 HADCLNLMKKYAQLFPLGLKLI----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCS---SLEKAMKAYRASGNWSG 1034 (1323)
Q Consensus 962 ~~~ale~~~~~~~ly~~AL~L~----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag---~~~kAl~~y~~ag~W~~ 1034 (1323)
.+.-++++.+. +||+.|+.|+ .|++.++.++++||+||..+|+|++|-..|+++= ++..-+.-|..+...++
T Consensus 337 le~kL~iL~kK-~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~Ikn 415 (933)
T KOG2114|consen 337 LETKLDILFKK-NLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKN 415 (933)
T ss_pred HHHHHHHHHHh-hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHH
Confidence 35557788888 8999999998 5888999999999999999999999999998873 33444444544444333
Q ss_pred HHHHHhhc---CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC------CHHHHHHHHHHhcCHHHHHHHHHhcCC
Q 000736 1035 VLTVAGLL---KLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG------DVTNGISLLIDARDWEEALRVAFMHRR 1105 (1323)
Q Consensus 1035 al~lA~~l---~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~------d~e~Av~~~i~~~~w~eA~rla~~~~~ 1105 (1323)
+......| ++...+-..++..+=- +.++-+.--+ |.+... |+|.|++.+.+.+..++|.+||.+++.
T Consensus 416 Lt~YLe~L~~~gla~~dhttlLLncYi---Klkd~~kL~e-fI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~ 491 (933)
T KOG2114|consen 416 LTSYLEALHKKGLANSDHTTLLLNCYI---KLKDVEKLTE-FISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK 491 (933)
T ss_pred HHHHHHHHHHcccccchhHHHHHHHHH---HhcchHHHHH-HHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc
Confidence 32222221 1222222223332222 2233222222 233244 799999999999999999999999886
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.033 Score=72.75 Aligned_cols=158 Identities=15% Similarity=0.048 Sum_probs=107.8
Q ss_pred HhcCHHHHHHHHHHc---C--CC--cHHHHHHHHHHHhcchHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHHH
Q 000736 943 RLQRFENALKHIVSM---G--DS--YHADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAA 1010 (1323)
Q Consensus 943 ~L~rye~Al~~l~~~---g--~~--~~~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eAa 1010 (1323)
..|++++|++.|.++ | ++ -+.-.+....+. +.+++|.+++ .+-..-..++....+-+...|++++|.
T Consensus 302 ~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~-g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~ 380 (697)
T PLN03081 302 LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL-ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380 (697)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHH
Confidence 457788888888765 2 11 134556666777 7788887776 111111123444455666678888888
Q ss_pred HHHHhcC-----CHHHHHHHHHHhCCHHHHHHHHhhc---CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCC---
Q 000736 1011 TTYFCCS-----SLEKAMKAYRASGNWSGVLTVAGLL---KLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGD--- 1079 (1323)
Q Consensus 1011 ~~y~~ag-----~~~kAl~~y~~ag~W~~al~lA~~l---~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d--- 1079 (1323)
.+|.... -|.-.+.+|.+.|++++|+.+-.++ +..|+.. .+..+...+...|+.++|.++|.....+
T Consensus 381 ~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~--T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~ 458 (697)
T PLN03081 381 NVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV--TFLAVLSACRYSGLSEQGWEIFQSMSENHRI 458 (697)
T ss_pred HHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC
Confidence 8888764 3456778888889999888776653 3444433 4667778888899999999998774322
Q ss_pred ------HHHHHHHHHHhcCHHHHHHHHHhc
Q 000736 1080 ------VTNGISLLIDARDWEEALRVAFMH 1103 (1323)
Q Consensus 1080 ------~e~Av~~~i~~~~w~eA~rla~~~ 1103 (1323)
+.--|++|++++++++|..+..+-
T Consensus 459 ~p~~~~y~~li~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 459 KPRAMHYACMIELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred CCCccchHhHHHHHHhcCCHHHHHHHHHHC
Confidence 456789999999999999887653
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.006 Score=79.62 Aligned_cols=159 Identities=11% Similarity=-0.014 Sum_probs=120.1
Q ss_pred cccHHHH--hcCHHHHHHHHHHcCCC---cHHHHHHHHHHHhcchHHHHhhc---------CCcHHHHHHHHHHHHHHhc
Q 000736 937 RYTIDLR--LQRFENALKHIVSMGDS---YHADCLNLMKKYAQLFPLGLKLI---------TDPAKMEQVLEAWADHLSD 1002 (1323)
Q Consensus 937 ~~~Id~~--L~rye~Al~~l~~~g~~---~~~~ale~~~~~~~ly~~AL~L~---------~d~~~~~~i~~~~A~~L~~ 1002 (1323)
...|++| .|++++|.+.|.++... -+...+..+.++ +.+++|++++ .|...+..+. .-+..
T Consensus 364 ~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~-G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll----~a~~~ 438 (697)
T PLN03081 364 TALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH-GRGTKAVEMFERMIAEGVAPNHVTFLAVL----SACRY 438 (697)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCCHHHHHHHH----HHHhc
Confidence 3466766 57899999999887421 256778888899 9999999998 1222333333 55567
Q ss_pred ccCHHHHHHHHHhcC----------CHHHHHHHHHHhCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHH
Q 000736 1003 VKCFEDAATTYFCCS----------SLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKI 1072 (1323)
Q Consensus 1003 ~~~~~eAa~~y~~ag----------~~~kAl~~y~~ag~W~~al~lA~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i 1072 (1323)
.|..++|..+|.... -|.--+++|.++|++++|+.+..+.+..|+. .....+...+...|+++.|..+
T Consensus 439 ~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~--~~~~~Ll~a~~~~g~~~~a~~~ 516 (697)
T PLN03081 439 SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTV--NMWAALLTACRIHKNLELGRLA 516 (697)
T ss_pred CCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCcHHHHHH
Confidence 889999999998763 2456789999999999999998887665543 3577788888889999998888
Q ss_pred HHHh-------cCCHHHHHHHHHHhcCHHHHHHHHHh
Q 000736 1073 ALDY-------CGDVTNGISLLIDARDWEEALRVAFM 1102 (1323)
Q Consensus 1073 ~~~y-------l~d~e~Av~~~i~~~~w~eA~rla~~ 1102 (1323)
+.+- .+.+...+.+|++.++|++|.++-..
T Consensus 517 ~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 517 AEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVET 553 (697)
T ss_pred HHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHH
Confidence 7762 24677889999999999999887654
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0013 Score=75.96 Aligned_cols=158 Identities=15% Similarity=0.068 Sum_probs=95.9
Q ss_pred CcEEEEEEcCCCCeEEEEeCCccEEEEeec-----CceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEe
Q 000736 117 GGVRFISPSPDGDLLGVTTGFGQILVMTHD-----WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATL 191 (1323)
Q Consensus 117 ~~I~~~awSPDG~~LA~~s~d~tV~l~t~~-----~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtv 191 (1323)
..+..+..||+|++||.++.+....+..-. +..+...++.. .-..+++--+..... +
T Consensus 63 ~a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~-----------------~~~ai~~~~~~~sv~-v 124 (390)
T KOG3914|consen 63 LAPALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK-----------------RPTAISFIREDTSVL-V 124 (390)
T ss_pred ccccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc-----------------CcceeeeeeccceEE-E
Confidence 446677789999999999888776443211 12222222111 113444444444433 2
Q ss_pred eccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEeccC
Q 000736 192 SEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQ 270 (1323)
Q Consensus 192 ss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~ 270 (1323)
.- .. +....+.+|+..+|.+..+. +|-..+..|+||||++.|.++.+|. .|++-+ .+--....|.+ .
T Consensus 125 ~d--ka-gD~~~~di~s~~~~~~~~~l-GhvSml~dVavS~D~~~IitaDRDE------kIRvs~ypa~f~Iesfcl--G 192 (390)
T KOG3914|consen 125 AD--KA-GDVYSFDILSADSGRCEPIL-GHVSMLLDVAVSPDDQFIITADRDE------KIRVSRYPATFVIESFCL--G 192 (390)
T ss_pred Ee--ec-CCceeeeeecccccCcchhh-hhhhhhheeeecCCCCEEEEecCCc------eEEEEecCcccchhhhcc--c
Confidence 21 11 34577889987555554433 4667789999999999999998864 355433 22111112222 3
Q ss_pred CCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCe
Q 000736 271 IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1323)
Q Consensus 271 ~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~ 308 (1323)
|..-|..++.-++ ..|.+++.|+ +|++|+..++.
T Consensus 193 H~eFVS~isl~~~-~~LlS~sGD~---tlr~Wd~~sgk 226 (390)
T KOG3914|consen 193 HKEFVSTISLTDN-YLLLSGSGDK---TLRLWDITSGK 226 (390)
T ss_pred cHhheeeeeeccC-ceeeecCCCC---cEEEEecccCC
Confidence 4556888887664 4588999888 99999998764
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.016 Score=70.92 Aligned_cols=140 Identities=12% Similarity=0.089 Sum_probs=83.6
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeec
Q 000736 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLE 156 (1323)
Q Consensus 77 ~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~ 156 (1323)
.+.+++|+|.|+++++ ..+|...|+.....+-...|. -..++|+++++ .|+....++|.+. ++++......+.
T Consensus 34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~G~----g~~~vw~~~n~-yAv~~~~~~I~I~-kn~~~~~~k~i~ 106 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAFGS----GLSFVWSSRNR-YAVLESSSTIKIY-KNFKNEVVKSIK 106 (443)
T ss_dssp --SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEEEE-----SEEEE-TSSE-EEEE-TTS-EEEE-ETTEE-TT----
T ss_pred CCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccccCc----eeEEEEecCcc-EEEEECCCeEEEE-EcCccccceEEc
Confidence 5889999999999998 568999999865544444443 24578999655 7777778889886 444433211221
Q ss_pred ccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCe
Q 000736 157 ELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGAN 236 (1323)
Q Consensus 157 ~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~l 236 (1323)
.. ..+..|-- |..|. +.+ ++.|.+||.++|+++...+.. + +..+.|||+|++
T Consensus 107 ~~---------------~~~~~If~---G~LL~-~~~-------~~~i~~yDw~~~~~i~~i~v~-~-vk~V~Ws~~g~~ 158 (443)
T PF04053_consen 107 LP---------------FSVEKIFG---GNLLG-VKS-------SDFICFYDWETGKLIRRIDVS-A-VKYVIWSDDGEL 158 (443)
T ss_dssp -S---------------S-EEEEE----SSSEE-EEE-------TTEEEEE-TTT--EEEEESS--E--EEEEE-TTSSE
T ss_pred CC---------------cccceEEc---CcEEE-EEC-------CCCEEEEEhhHcceeeEEecC-C-CcEEEEECCCCE
Confidence 11 01223321 99888 553 357999999899999886632 2 789999999999
Q ss_pred EEEEecCCCCCCCCeEEEEeCC
Q 000736 237 IAAVYDRKSENKCPSIVFYERN 258 (1323)
Q Consensus 237 IAs~s~d~~~~~~~~V~~~e~n 258 (1323)
+|-.+.+ .+.+++.|
T Consensus 159 val~t~~-------~i~il~~~ 173 (443)
T PF04053_consen 159 VALVTKD-------SIYILKYN 173 (443)
T ss_dssp EEEE-S--------SEEEEEE-
T ss_pred EEEEeCC-------eEEEEEec
Confidence 9999864 57777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00063 Score=79.85 Aligned_cols=167 Identities=13% Similarity=0.119 Sum_probs=113.1
Q ss_pred EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEee--cCceeeeeeecccCCCceeccCcc--ccCCCCeEEEEEecCCc
Q 000736 111 VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH--DWDLLYENPLEELAEGFDVHEPEL--SSSFSFKSPISWRGDGK 186 (1323)
Q Consensus 111 ~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~--~~d~~~e~~l~~~~~~~~Vs~tqf--~~~~~~i~~isWspDG~ 186 (1323)
.+| |...|++++==.+.+.+++++.|+||++|+. .+|-+.. +..|| +.|...|.+|.|-.|-+
T Consensus 731 f~G-H~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~t------------saCQfTY~aHkk~i~~igfL~~lr 797 (1034)
T KOG4190|consen 731 FTG-HQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGT------------SACQFTYQAHKKPIHDIGFLADLR 797 (1034)
T ss_pred ccC-cHHHhHHHHhcccccceeeccCCceEEEEEeccccCcccc------------ceeeeEhhhccCcccceeeeeccc
Confidence 455 4777887766667788999999999999973 2222211 11232 26777789999999999
Q ss_pred EEEEeeccccccCCCCEEEEEECCCCceeeeec--cCCCceeEEEEccC-CC--eEEEEecCCCCCCCCeEEEEe-CCCe
Q 000736 187 YFATLSEFCNSSKLHKRLKVWERDSGTLQASSE--LKAFMGAVLEWMPS-GA--NIAAVYDRKSENKCPSIVFYE-RNGL 260 (1323)
Q Consensus 187 ~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e--~~~~~v~slawsPd-G~--lIAs~s~d~~~~~~~~V~~~e-~nGl 260 (1323)
++|++ |+-|.+||+--|.+++..+ +..+.+..|--=|+ .+ +||.++.. .+|++|| |.+.
T Consensus 798 ~i~Sc---------D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsae------STVKl~DaRsce 862 (1034)
T KOG4190|consen 798 SIASC---------DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAE------STVKLFDARSCE 862 (1034)
T ss_pred eeeec---------cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccch------hhheeeeccccc
Confidence 99832 4689999998888877432 33444444444454 22 45554543 5799998 4443
Q ss_pred eEEEEEec-cCC-CCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCe
Q 000736 261 ERSSFDIN-EQI-DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1323)
Q Consensus 261 ~~~~f~l~-~~~-~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~ 308 (1323)
-..++.+- .++ .+.+..|+--|.|..||.+.+++ +|-+.|..|+.
T Consensus 863 ~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnG---ci~~LDaR~G~ 909 (1034)
T KOG4190|consen 863 WTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNG---CIAILDARNGK 909 (1034)
T ss_pred ceeeEEeccCCCCchheeEEEeccCcchhhHHhcCC---cEEEEecCCCc
Confidence 34444433 222 35789999999999999999998 89888887753
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0079 Score=68.37 Aligned_cols=149 Identities=19% Similarity=0.179 Sum_probs=86.4
Q ss_pred cEEEEEEcCCCCeEEEEe--CCc-cEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeecc
Q 000736 118 GVRFISPSPDGDLLGVTT--GFG-QILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEF 194 (1323)
Q Consensus 118 ~I~~~awSPDG~~LA~~s--~d~-tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~ 194 (1323)
.+.++++||||+.+|..+ .++ .+.++... ...... + . .......+|++||...+ +..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~-~~~~~~-~-~---------------g~~l~~PS~d~~g~~W~-v~~- 84 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG-GPVRPV-L-T---------------GGSLTRPSWDPDGWVWT-VDD- 84 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC-Ccceee-c-c---------------CCccccccccCCCCEEE-EEc-
Confidence 689999999999999988 433 33333221 111111 0 0 12457889999998777 542
Q ss_pred ccccCCCCEEEEE-ECCCCceeee--ecc-CCCceeEEEEccCCCeEEEEecCCCCCCCCeEEE--EeC--CCeeEE---
Q 000736 195 CNSSKLHKRLKVW-ERDSGTLQAS--SEL-KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF--YER--NGLERS--- 263 (1323)
Q Consensus 195 d~~~~~d~~IrVW-d~~~G~l~~t--~e~-~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~--~e~--nGl~~~--- 263 (1323)
++...+++ +..+|..... .-+ ..+.|.++.+||||..+|....+.. ...|.+ -.+ +|..+.
T Consensus 85 -----~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~---~~~v~va~V~r~~~g~~~~l~~ 156 (253)
T PF10647_consen 85 -----GSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGG---GGRVYVAGVVRDGDGVPRRLTG 156 (253)
T ss_pred -----CCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCC---CCeEEEEEEEeCCCCCcceecc
Confidence 23455565 3334544332 211 2227899999999999998875432 233332 333 341111
Q ss_pred EEEeccCCCCcEEEEEEccCCCeeEEEEccC
Q 000736 264 SFDINEQIDSTVELLKWNCMSDLLAAVVRFE 294 (1323)
Q Consensus 264 ~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~ 294 (1323)
...+.......+.+++|.+++++++.+...+
T Consensus 157 ~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 157 PRRVAPPLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred ceEecccccCcceeeeecCCCEEEEEeCCCC
Confidence 0111111134689999999999887776544
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.012 Score=71.08 Aligned_cols=150 Identities=18% Similarity=0.251 Sum_probs=104.6
Q ss_pred hHHHHhhcCCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhc---------------------CCHHHHHHHHHHhCCHHH
Q 000736 976 FPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCC---------------------SSLEKAMKAYRASGNWSG 1034 (1323)
Q Consensus 976 y~~AL~L~~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~a---------------------g~~~kAl~~y~~ag~W~~ 1034 (1323)
|++|++| ||. +.+.+-..|.-|.+.+.|++|...|++| |..+-||++|.++
T Consensus 241 y~eAvkl--dP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykra----- 312 (966)
T KOG4626|consen 241 YEEAVKL--DPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRA----- 312 (966)
T ss_pred HHHhhcC--CCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHH-----
Confidence 6666664 443 4456667889999999999999999987 5567777777544
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH---hcCC----HHHHHHHHHHhcCHHHHHHHHHhcCCch
Q 000736 1035 VLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD---YCGD----VTNGISLLIDARDWEEALRVAFMHRRED 1107 (1323)
Q Consensus 1035 al~lA~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~---yl~d----~e~Av~~~i~~~~w~eA~rla~~~~~~d 1107 (1323)
+. .+.+. .+-+..||..|++.|+..||..+|.+ |+-. ...--..|.+.+.+++|.|+=.+--
T Consensus 313 -l~--~~P~F-----~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al--- 381 (966)
T KOG4626|consen 313 -LE--LQPNF-----PDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKAL--- 381 (966)
T ss_pred -Hh--cCCCc-----hHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHH---
Confidence 32 22222 35667899999999999999999976 2223 3334457788889999988643311
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000736 1108 LITKVKHASLECASSLIGEYKEGLEKVGKYLTRYLAVRQRR 1148 (1323)
Q Consensus 1108 Lie~V~~~l~e~~~~~~e~l~e~~~~~~k~~~RL~~vR~~k 1148 (1323)
.|.|.+.++...+...+++ ++.+.+.+.-|.+.-..+
T Consensus 382 ---~v~p~~aaa~nNLa~i~kq-qgnl~~Ai~~YkealrI~ 418 (966)
T KOG4626|consen 382 ---EVFPEFAAAHNNLASIYKQ-QGNLDDAIMCYKEALRIK 418 (966)
T ss_pred ---hhChhhhhhhhhHHHHHHh-cccHHHHHHHHHHHHhcC
Confidence 1788888888887666654 667777777777664443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0024 Score=79.19 Aligned_cols=130 Identities=15% Similarity=0.191 Sum_probs=88.3
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCeEEEeceecCcEEEEEEcCC-----CCeEEEEeCCccEEEEeecCceee-eeeecc
Q 000736 84 LMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPD-----GDLLGVTTGFGQILVMTHDWDLLY-ENPLEE 157 (1323)
Q Consensus 84 spdg~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPD-----G~~LA~~s~d~tV~l~t~~~d~~~-e~~l~~ 157 (1323)
--+|+.++++|.||+|.+-.+.+.+-.+.-.+...|.+++++|| .+.+++|+..| +++..|.|=--. ...++
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~- 157 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS- 157 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeee-
Confidence 45799999999999999988877543333345678999999999 67788888888 777666652211 11122
Q ss_pred cCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCce------eEEEEc
Q 000736 158 LAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMG------AVLEWM 231 (1323)
Q Consensus 158 ~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v------~slaws 231 (1323)
...+.|.+|+|++ .++| =++ |--|||||+.+++.+..-++....+ ..+.|.
T Consensus 158 -------------~~eG~I~~i~W~g--~lIA-Wan-------d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~ 214 (846)
T KOG2066|consen 158 -------------EGEGPIHSIKWRG--NLIA-WAN-------DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQ 214 (846)
T ss_pred -------------cCccceEEEEecC--cEEE-Eec-------CCCcEEEeccccceeeccCCCCCCCCcccCCCceEec
Confidence 2346789999985 5777 332 2348999997777666555433322 467777
Q ss_pred cCCCeEE
Q 000736 232 PSGANIA 238 (1323)
Q Consensus 232 PdG~lIA 238 (1323)
++.+++.
T Consensus 215 ~~~~LVI 221 (846)
T KOG2066|consen 215 DEDRLVI 221 (846)
T ss_pred CCCeEEE
Confidence 7765543
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.013 Score=74.08 Aligned_cols=181 Identities=14% Similarity=0.093 Sum_probs=99.7
Q ss_pred CCEEEEEEecCCCEEEEEe------CCCcEEEE--eCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe-ec
Q 000736 76 DSITAFDYLMEKEALIVGT------SSGLLLLH--SVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HD 146 (1323)
Q Consensus 76 ~~V~~v~~spdg~~La~as------~dG~I~lw--~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t-~~ 146 (1323)
..+.+.+.||||+.+|... .|+.-.|| +..+........ ....+-+|||||+.|++++....+.... ..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC--CCCCCceECCCCCceEEEecCcceEEEeccC
Confidence 4688999999999998776 24444444 543332222221 2488999999999999987543443222 11
Q ss_pred Cc-eeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEE---EECCCCceeee-----
Q 000736 147 WD-LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKV---WERDSGTLQAS----- 217 (1323)
Q Consensus 147 ~d-~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrV---Wd~~~G~l~~t----- 217 (1323)
.. .+....+.... . .+ ..+..|..+.|||||..+|.+. +++|.| =....|+ ...
T Consensus 428 ~~gql~~~~vd~ge----~--~~--~~~g~Issl~wSpDG~RiA~i~--------~g~v~Va~Vvr~~~G~-~~l~~~~~ 490 (591)
T PRK13616 428 ATGQLARTPVDASA----V--AS--RVPGPISELQLSRDGVRAAMII--------GGKVYLAVVEQTEDGQ-YALTNPRE 490 (591)
T ss_pred CCceEEEEeccCch----h--hh--ccCCCcCeEEECCCCCEEEEEE--------CCEEEEEEEEeCCCCc-eeecccEE
Confidence 11 11111111111 0 00 1235689999999999999443 145555 3334665 222
Q ss_pred -eccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccC-CCCcEEEEEEcc
Q 000736 218 -SELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQ-IDSTVELLKWNC 282 (1323)
Q Consensus 218 -~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~-~~~~V~~laWSp 282 (1323)
.......+.+++|.++|.++ .+..+. ...|...+.+|..... ++.. ....|.+|+=++
T Consensus 491 l~~~l~~~~~~l~W~~~~~L~-V~~~~~----~~~v~~v~vDG~~~~~--~~~~n~~~~v~~vaa~~ 550 (591)
T PRK13616 491 VGPGLGDTAVSLDWRTGDSLV-VGRSDP----EHPVWYVNLDGSNSDA--LPSRNLSAPVVAVAASP 550 (591)
T ss_pred eecccCCccccceEecCCEEE-EEecCC----CCceEEEecCCccccc--cCCCCccCceEEEecCC
Confidence 11222335789999999966 444332 2446555666654321 1211 123466777665
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.024 Score=68.10 Aligned_cols=164 Identities=12% Similarity=0.065 Sum_probs=110.3
Q ss_pred ccHHHHhcCHHHHHHHHHHcCCC--cH----HHHHHHHHHHhcchHHHHhhc-----CCcH----HHHHHHHHHHHHHhc
Q 000736 938 YTIDLRLQRFENALKHIVSMGDS--YH----ADCLNLMKKYAQLFPLGLKLI-----TDPA----KMEQVLEAWADHLSD 1002 (1323)
Q Consensus 938 ~~Id~~L~rye~Al~~l~~~g~~--~~----~~ale~~~~~~~ly~~AL~L~-----~d~~----~~~~i~~~~A~~L~~ 1002 (1323)
..+....|+|++|+..|.++-.. .. ..-..+..+. +.|++|++++ .++. ....++...|..+..
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 192 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQE-KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA 192 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHh-chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh
Confidence 45556678999999998876321 11 1123344667 8899998887 1222 133455677888888
Q ss_pred ccCHHHHHHHHHhcCCH--------HHHHHHHHHhCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 000736 1003 VKCFEDAATTYFCCSSL--------EKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGEAAKIA 1073 (1323)
Q Consensus 1003 ~~~~~eAa~~y~~ag~~--------~kAl~~y~~ag~W~~al~lA~~l-~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~ 1073 (1323)
.+++++|..+|.++-.. -....+|...|++++|+.+..+. ..++.........++..+...|++.+|...+
T Consensus 193 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l 272 (389)
T PRK11788 193 RGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFL 272 (389)
T ss_pred CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999886421 12336777889999998776653 2234443455677888888899999998888
Q ss_pred HHhcC---C---HHHHHHHHHHhcCHHHHHHHHHh
Q 000736 1074 LDYCG---D---VTNGISLLIDARDWEEALRVAFM 1102 (1323)
Q Consensus 1074 ~~yl~---d---~e~Av~~~i~~~~w~eA~rla~~ 1102 (1323)
.+... + ...-+.+|++.+++++|+++..+
T Consensus 273 ~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~ 307 (389)
T PRK11788 273 RRALEEYPGADLLLALAQLLEEQEGPEAAQALLRE 307 (389)
T ss_pred HHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 77432 1 23346678888889998876643
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.038 Score=67.32 Aligned_cols=78 Identities=18% Similarity=0.107 Sum_probs=59.9
Q ss_pred eeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEECCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEE
Q 000736 386 FSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVS 465 (1323)
Q Consensus 386 ~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~ 465 (1323)
.++.+++.|.+.+++|+. ..|+.|..||+|.+|+....... +.- ..-.+..++|+|+|.+++++
T Consensus 254 tsipL~s~v~~ca~sp~E--~kLvlGC~DgSiiLyD~~~~~t~--~~k------------a~~~P~~iaWHp~gai~~V~ 317 (545)
T PF11768_consen 254 TSIPLPSQVICCARSPSE--DKLVLGCEDGSIILYDTTRGVTL--LAK------------AEFIPTLIAWHPDGAIFVVG 317 (545)
T ss_pred EEEecCCcceEEecCccc--ceEEEEecCCeEEEEEcCCCeee--eee------------ecccceEEEEcCCCcEEEEE
Confidence 355678899999999998 89999999999999998754222 000 01157889999999999998
Q ss_pred ecCCCCeeEEEEeecc
Q 000736 466 HHGPRHSNYFRGATLN 481 (1323)
Q Consensus 466 ~~~~~~~~~~~~~~~~ 481 (1323)
+.. ..+.+|....+
T Consensus 318 s~q--GelQ~FD~ALs 331 (545)
T PF11768_consen 318 SEQ--GELQCFDMALS 331 (545)
T ss_pred cCC--ceEEEEEeecC
Confidence 764 57888877654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0065 Score=78.09 Aligned_cols=180 Identities=15% Similarity=0.153 Sum_probs=103.3
Q ss_pred cCCcccchHhHHHHhcCCc-----hhccccHHHHhcCHHHHHHHHHHc---CCCc----HHHHHHHHHHHhcchHHHHhh
Q 000736 915 QRDPKEFLPYLQELESMPP-----LLMRYTIDLRLQRFENALKHIVSM---GDSY----HADCLNLMKKYAQLFPLGLKL 982 (1323)
Q Consensus 915 qkDPkeYLpfL~~L~~l~~-----~~~~~~Id~~L~rye~Al~~l~~~---g~~~----~~~ale~~~~~~~ly~~AL~L 982 (1323)
+.++.+.+..+++.-.+++ .+.+..+...+|+|++|+..|.++ .++. ...+. ...+. +.|++|+..
T Consensus 378 ~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~-~~~~~-g~~~eA~~~ 455 (615)
T TIGR00990 378 LGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGV-TQYKE-GSIASSMAT 455 (615)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHH-HHHHC-CCHHHHHHH
Confidence 3455555555555444422 344556677788999999888765 2321 12222 22455 677788777
Q ss_pred c-----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhcCCH---------------HHHHHHHHHhCCHHHHHHHHhh-
Q 000736 983 I-----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL---------------EKAMKAYRASGNWSGVLTVAGL- 1041 (1323)
Q Consensus 983 ~-----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~---------------~kAl~~y~~ag~W~~al~lA~~- 1041 (1323)
+ ..| ....++..+|.-+...|+|++|...|.+|-.. .++...|...|++.+|+.+..+
T Consensus 456 ~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kA 534 (615)
T TIGR00990 456 FRRCKKNFP-EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKA 534 (615)
T ss_pred HHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 6 222 23556777888888888999998888876432 2233344445777777766654
Q ss_pred cCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHH
Q 000736 1042 LKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRV 1099 (1323)
Q Consensus 1042 l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~e~Av~~~i~~~~w~eA~rl 1099 (1323)
+..+++.. .....+|..+...|++.+|...|.+ +-....-..-...+..|.+|.++
T Consensus 535 l~l~p~~~-~a~~~la~~~~~~g~~~eAi~~~e~-A~~l~~~~~e~~~a~~~~~a~~~ 590 (615)
T TIGR00990 535 LIIDPECD-IAVATMAQLLLQQGDVDEALKLFER-AAELARTEGELVQAISYAEATRT 590 (615)
T ss_pred HhcCCCcH-HHHHHHHHHHHHccCHHHHHHHHHH-HHHHhccHHHHHHHHHHHHHHHH
Confidence 23333322 2455667777777777777776655 22222222223444455555544
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.021 Score=64.49 Aligned_cols=193 Identities=16% Similarity=0.140 Sum_probs=103.2
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEe-CCCcE
Q 000736 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT-SSGLL 99 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as-~dG~I 99 (1323)
.+.+++||+++++||++.+ ...|+.++. .++. ++.+++...+-.-+|+|.-++.+ +++. .++++
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~---~G~v----------lr~i~l~g~~D~EgI~y~g~~~~-vl~~Er~~~L 88 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSL---DGKV----------LRRIPLDGFGDYEGITYLGNGRY-VLSEERDQRL 88 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEET---T--E----------EEEEE-SS-SSEEEEEE-STTEE-EEEETTTTEE
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcC---CCCE----------EEEEeCCCCCCceeEEEECCCEE-EEEEcCCCcE
Confidence 5899999999999999988 556877776 3444 22222222245789999877754 4555 48889
Q ss_pred EEEeCC--CCeE-----E--Eec---eecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccC
Q 000736 100 LLHSVD--GNAT-----E--VVG---RVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEP 167 (1323)
Q Consensus 100 ~lw~~~--~~~~-----e--~vg---~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~t 167 (1323)
.+...+ +..+ . .+| ....|+-.++|+|.++.|.++-+.....++...... ....+... ....+...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~-~~~~~~~~-~~~~~~~~ 166 (248)
T PF06977_consen 89 YIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP-GGFDLFVS-DDQDLDDD 166 (248)
T ss_dssp EEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT--SS--EEE-E-HHHH-H
T ss_pred EEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc-Cccceeec-cccccccc
Confidence 888773 2211 1 122 234679999999999999988877666554322110 00000000 00000000
Q ss_pred ccccCCCCeEEEEEecCC-cEEEEeeccccccCCCCEEEEEECCCCceeeeeccCC---C------ceeEEEEccCCCeE
Q 000736 168 ELSSSFSFKSPISWRGDG-KYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA---F------MGAVLEWMPSGANI 237 (1323)
Q Consensus 168 qf~~~~~~i~~isWspDG-~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~---~------~v~slawsPdG~lI 237 (1323)
. ..-.....+++.|.. .+++ .|. ..+.+-++|+ +|+..+...-.. + .-..|+|.|+|++.
T Consensus 167 ~--~~~~d~S~l~~~p~t~~lli-LS~------es~~l~~~d~-~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY 236 (248)
T PF06977_consen 167 K--LFVRDLSGLSYDPRTGHLLI-LSD------ESRLLLELDR-QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY 236 (248)
T ss_dssp T----SS---EEEEETTTTEEEE-EET------TTTEEEEE-T-T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE
T ss_pred c--ceeccccceEEcCCCCeEEE-EEC------CCCeEEEECC-CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE
Confidence 0 011235788888874 5666 653 3589999998 999877643222 1 23789999999876
Q ss_pred EEE
Q 000736 238 AAV 240 (1323)
Q Consensus 238 As~ 240 (1323)
.++
T Consensus 237 Ivs 239 (248)
T PF06977_consen 237 IVS 239 (248)
T ss_dssp EEE
T ss_pred EEc
Confidence 655
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00069 Score=53.12 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=30.5
Q ss_pred EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe
Q 000736 111 VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT 144 (1323)
Q Consensus 111 ~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t 144 (1323)
.+..|.+.|++++|+|++..||+++.|++|++|+
T Consensus 6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4445789999999999999999999999999984
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.032 Score=75.12 Aligned_cols=255 Identities=13% Similarity=0.080 Sum_probs=150.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCCc-chhHHhHHhhcCCCccHHHHHHHHHHHHhhcccCCCCCCCCChhhHHHHHHHHHh
Q 000736 809 CNKVSSVLLAIRKALEEKVPESPS-RELCILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLW 887 (1323)
Q Consensus 809 ~~KV~~iC~a~~~~l~~~~~~~~~-~~~~ilT~~v~~~pp~le~aL~~i~~l~~~~~~~~~~~~~~~~~~ae~alk~l~~ 887 (1323)
.+++......+.+..+.. ..++. ....+|.+|++..- +++|+.+...+++..... +...
T Consensus 485 ~G~vd~A~~vf~eM~~~G-v~PdvvTynaLI~gy~k~G~--~eeAl~lf~~M~~~Gv~P-------D~vT---------- 544 (1060)
T PLN03218 485 SGKVDAMFEVFHEMVNAG-VEANVHTFGALIDGCARAGQ--VAKAFGAYGIMRSKNVKP-------DRVV---------- 544 (1060)
T ss_pred CcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCcC--HHHHHHHHHHHHHcCCCC-------CHHH----------
Confidence 356666555444433321 12222 33567888888876 889999888887542211 2111
Q ss_pred hccHHHHHHHHHhccChhHHHHHHHHhcCCcccchHhHHHHhcCCchhccc--cHH--HHhcCHHHHHHHHHHcCC----
Q 000736 888 LADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRY--TID--LRLQRFENALKHIVSMGD---- 959 (1323)
Q Consensus 888 L~d~~~Ly~~ALg~yD~~lal~VAq~sqkDPkeYLpfL~~L~~l~~~~~~~--~Id--~~L~rye~Al~~l~~~g~---- 959 (1323)
.+.|.+.....-+++-|..+-+.-... -..+.++..-| .|+ ...|++++|.+.|.++.+
T Consensus 545 ---YnsLI~a~~k~G~~deA~~lf~eM~~~----------~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~ 611 (1060)
T PLN03218 545 ---FNALISACGQSGAVDRAFDVLAEMKAE----------THPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611 (1060)
T ss_pred ---HHHHHHHHHHCCCHHHHHHHHHHHHHh----------cCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 122222222223344433332221000 00121221111 222 235778888888876531
Q ss_pred ---CcHHHHHHHHHHHhcchHHHHhhc---C----CcHHHHHHHHHHHHHHhcccCHHHHHHHHHhcCC---------HH
Q 000736 960 ---SYHADCLNLMKKYAQLFPLGLKLI---T----DPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSS---------LE 1020 (1323)
Q Consensus 960 ---~~~~~ale~~~~~~~ly~~AL~L~---~----d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~---------~~ 1020 (1323)
..+...+..+.+. +.+++|+++| . .|. ...+....+.+...+++++|..+|....+ |.
T Consensus 612 p~~~tynsLI~ay~k~-G~~deAl~lf~eM~~~Gv~PD--~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyn 688 (1060)
T PLN03218 612 GTPEVYTIAVNSCSQK-GDWDFALSIYDDMKKKGVKPD--EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYS 688 (1060)
T ss_pred CChHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 1246677777888 8888888887 1 222 12444555666778888888888876532 45
Q ss_pred HHHHHHHHhCCHHHHHHHHhhc---CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCC--------HHHHHHHHHH
Q 000736 1021 KAMKAYRASGNWSGVLTVAGLL---KLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGD--------VTNGISLLID 1089 (1323)
Q Consensus 1021 kAl~~y~~ag~W~~al~lA~~l---~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d--------~e~Av~~~i~ 1089 (1323)
-.+.+|.++|+|++|+.+-..+ +..|+ ...+..|...+.+.|++++|.++|.++... +...+..|++
T Consensus 689 sLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd--vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 689 SLMGACSNAKNWKKALELYEDIKSIKLRPT--VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 5678888888888887766544 22332 245778888888899999999998875322 5667788999
Q ss_pred hcCHHHHHHHHH
Q 000736 1090 ARDWEEALRVAF 1101 (1323)
Q Consensus 1090 ~~~w~eA~rla~ 1101 (1323)
.+++++|..+-.
T Consensus 767 ~G~le~A~~l~~ 778 (1060)
T PLN03218 767 KDDADVGLDLLS 778 (1060)
T ss_pred CCCHHHHHHHHH
Confidence 999999887644
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0044 Score=78.42 Aligned_cols=150 Identities=12% Similarity=0.060 Sum_probs=80.2
Q ss_pred CcEEEEEEcCCCCeEEEEeC------CccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEE
Q 000736 117 GGVRFISPSPDGDLLGVTTG------FGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFAT 190 (1323)
Q Consensus 117 ~~I~~~awSPDG~~LA~~s~------d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAt 190 (1323)
..+.+++.||||+.+|.... |..-.+|.-...--. ..+.. + ....+.+|+|||+.+++
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~-------------g--~~~t~PsWspDG~~lw~ 413 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLE-------------G--HSLTRPSWSLDADAVWV 413 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeec-------------C--CCCCCceECCCCCceEE
Confidence 35789999999999999872 444444432111000 11110 1 12478999999998885
Q ss_pred eeccccc-----cCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEE--EeC--CCee
Q 000736 191 LSEFCNS-----SKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF--YER--NGLE 261 (1323)
Q Consensus 191 vss~d~~-----~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~--~e~--nGl~ 261 (1323)
++.-... ..+.+.+.+.+.+.|+... ...+.+.++.|||||..||.... ..|.+ -.+ .|..
T Consensus 414 v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~-------g~v~Va~Vvr~~~G~~ 483 (591)
T PRK13616 414 VVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIG-------GKVYLAVVEQTEDGQY 483 (591)
T ss_pred EecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEEC-------CEEEEEEEEeCCCCce
Confidence 5411000 0011233333443333322 23566899999999999998774 13333 222 3421
Q ss_pred E-EEE-EeccCCCCcEEEEEEccCCCeeEEEEcc
Q 000736 262 R-SSF-DINEQIDSTVELLKWNCMSDLLAAVVRF 293 (1323)
Q Consensus 262 ~-~~f-~l~~~~~~~V~~laWSpDg~~LA~~~~d 293 (1323)
. ... .+.......+.+++|.+|++++ ++..+
T Consensus 484 ~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~ 516 (591)
T PRK13616 484 ALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSD 516 (591)
T ss_pred eecccEEeecccCCccccceEecCCEEE-EEecC
Confidence 1 100 0111112346889999999965 55443
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.05 Score=71.88 Aligned_cols=184 Identities=12% Similarity=0.012 Sum_probs=107.9
Q ss_pred cCCcccchHhHHHHhcC-Cc----hhccccHHHHhcCHHHHHHHHHHc---CCCcHHHH---HHHHHHHhcchHHHHhhc
Q 000736 915 QRDPKEFLPYLQELESM-PP----LLMRYTIDLRLQRFENALKHIVSM---GDSYHADC---LNLMKKYAQLFPLGLKLI 983 (1323)
Q Consensus 915 qkDPkeYLpfL~~L~~l-~~----~~~~~~Id~~L~rye~Al~~l~~~---g~~~~~~a---le~~~~~~~ly~~AL~L~ 983 (1323)
..++.+-+..++++... |. ......+....|+|++|+++|.++ .++..... ..+..+. +.+++|++++
T Consensus 444 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~ 522 (899)
T TIGR02917 444 SGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQE-GNPDDAIQRF 522 (899)
T ss_pred cCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHC-CCHHHHHHHH
Confidence 34444445555555543 21 233456667788899988888764 22222211 1233455 6777777776
Q ss_pred -----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhcC--------CHHHHHHHHHHhCCHHHHHHHHhhcC-CCHHHH
Q 000736 984 -----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCS--------SLEKAMKAYRASGNWSGVLTVAGLLK-LGKDEV 1049 (1323)
Q Consensus 984 -----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag--------~~~kAl~~y~~ag~W~~al~lA~~l~-~~~~~~ 1049 (1323)
.+|. ...++..+|..+...+++++|...|.++- .+-....+|...|++++|+.+....- ..+..
T Consensus 523 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~- 600 (899)
T TIGR02917 523 EKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDS- 600 (899)
T ss_pred HHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-
Confidence 2333 33456667777778888888888877651 11233466667777777776665431 11111
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhcC----C---HHHHHHHHHHhcCHHHHHHHHH
Q 000736 1050 AKLAQELCEELQALGKPGEAAKIALDYCG----D---VTNGISLLIDARDWEEALRVAF 1101 (1323)
Q Consensus 1050 ~~l~~~la~~L~~~~~~~eAa~i~~~yl~----d---~e~Av~~~i~~~~w~eA~rla~ 1101 (1323)
.+....++..+...|++.+|...|.+.+. + ......+|...++|++|+....
T Consensus 601 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 659 (899)
T TIGR02917 601 PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLK 659 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 24566677777777888888777766321 1 2234456666777777766543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.025 Score=67.91 Aligned_cols=191 Identities=17% Similarity=0.196 Sum_probs=122.2
Q ss_pred HHHHHHHHhcCCcccchHhHHHHhcCCchhccccHHHHhcCHHHHHHHHHHcC---CCcH---HHHHHHHHHHhcchHHH
Q 000736 906 LAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMG---DSYH---ADCLNLMKKYAQLFPLG 979 (1323)
Q Consensus 906 lal~VAq~sqkDPkeYLpfL~~L~~l~~~~~~~~Id~~L~rye~Al~~l~~~g---~~~~---~~ale~~~~~~~ly~~A 979 (1323)
....|++.++.+-+| +.....+..+.+..+....|+|++|+.+|.++- ++.. -..-.+.... +.|++|
T Consensus 15 ~~~~~~~~~~~~~~~-----~~~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A 88 (389)
T PRK11788 15 YGWYMGRRSARQDQQ-----KESNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRR-GEVDRA 88 (389)
T ss_pred HHHHHHhchhhhhhh-----hhhhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc-CcHHHH
Confidence 345566666665544 334455667777777777888999999888763 2211 1112344566 788888
Q ss_pred Hhhc----CCc----HHHHHHHHHHHHHHhcccCHHHHHHHHHhcCC--------HHHHHHHHHHhCCHHHHHHHHhhcC
Q 000736 980 LKLI----TDP----AKMEQVLEAWADHLSDVKCFEDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGLLK 1043 (1323)
Q Consensus 980 L~L~----~d~----~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~--------~~kAl~~y~~ag~W~~al~lA~~l~ 1043 (1323)
++++ ..+ .....++..+|..+...+++++|...|.++-+ +..-..+|...|+|++|+.+...+-
T Consensus 89 ~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (389)
T PRK11788 89 IRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLE 168 (389)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 8876 221 22235667778888888999999988888743 1222456778888998887766541
Q ss_pred -CCHH----HHHHHHHHHHHHHHHcCChHHHHHHHHHhcC-C---H---HHHHHHHHHhcCHHHHHHHHHh
Q 000736 1044 -LGKD----EVAKLAQELCEELQALGKPGEAAKIALDYCG-D---V---TNGISLLIDARDWEEALRVAFM 1102 (1323)
Q Consensus 1044 -~~~~----~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~-d---~---e~Av~~~i~~~~w~eA~rla~~ 1102 (1323)
..+. ........++..+.+.|++.+|...|.+.+. + . -....+|++.+++++|+.+..+
T Consensus 169 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 239 (389)
T PRK11788 169 KLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALER 239 (389)
T ss_pred HhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 0111 1233455677788888999999888887442 1 1 1234667888888888776543
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.024 Score=74.85 Aligned_cols=159 Identities=14% Similarity=0.093 Sum_probs=76.2
Q ss_pred cHHHHhcCHHHHHHHHHHc---CCCcH---HHHHHHHHHHhcchHHHHhhc----CCcHHHHHHHHHHHHHHhcccCHHH
Q 000736 939 TIDLRLQRFENALKHIVSM---GDSYH---ADCLNLMKKYAQLFPLGLKLI----TDPAKMEQVLEAWADHLSDVKCFED 1008 (1323)
Q Consensus 939 ~Id~~L~rye~Al~~l~~~---g~~~~---~~ale~~~~~~~ly~~AL~L~----~d~~~~~~i~~~~A~~L~~~~~~~e 1008 (1323)
.+....|++++|+..+.++ +++.. -....+..+. +.|++|++++ ........++..+|.-+...+++++
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGK-GQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHC-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 4444456666666666543 11111 1122334455 6666666655 1111223455566666666666666
Q ss_pred HHHHHHhcC--------CHHHHHHHHHHhCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC-
Q 000736 1009 AATTYFCCS--------SLEKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG- 1078 (1323)
Q Consensus 1009 Aa~~y~~ag--------~~~kAl~~y~~ag~W~~al~lA~~l-~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~- 1078 (1323)
|...|.++- .+.....+|...|+|++|+.+..+. ...++. .+....++..+...|++.+|..++.....
T Consensus 620 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 698 (899)
T TIGR02917 620 AVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDN-TEAQIGLAQLLLAAKRTESAKKIAKSLQKQ 698 (899)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 666665541 1123334555566666665544331 111111 23444555566666666666665555211
Q ss_pred ---C---HHHHHHHHHHhcCHHHHHHH
Q 000736 1079 ---D---VTNGISLLIDARDWEEALRV 1099 (1323)
Q Consensus 1079 ---d---~e~Av~~~i~~~~w~eA~rl 1099 (1323)
+ ......+|...++|++|+..
T Consensus 699 ~~~~~~~~~~~~~~~~~~g~~~~A~~~ 725 (899)
T TIGR02917 699 HPKAALGFELEGDLYLRQKDYPAAIQA 725 (899)
T ss_pred CcCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 1 11123445555666666544
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.1 Score=63.54 Aligned_cols=204 Identities=13% Similarity=0.054 Sum_probs=107.2
Q ss_pred EEEEEEecCCCEEEEE-eCCCc----EEEEeCCCCeEE--EeceecCcEEEEEEcCCCCeEEEEeCCcc-----------
Q 000736 78 ITAFDYLMEKEALIVG-TSSGL----LLLHSVDGNATE--VVGRVEGGVRFISPSPDGDLLGVTTGFGQ----------- 139 (1323)
Q Consensus 78 V~~v~~spdg~~La~a-s~dG~----I~lw~~~~~~~e--~vg~~~~~I~~~awSPDG~~LA~~s~d~t----------- 139 (1323)
+..+.+||||+.||.+ +.+|. |++.|+.+++.- .+.... -..++|++||+.|....-+..
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 3468899999999976 45555 899999988653 222211 123999999999988875442
Q ss_pred EEEEeecCceeeeeeecccCCCceeccCccccCC-CC-eEEEEEecCCcEEEEeeccccccCCC-CEEEEEECCCC----
Q 000736 140 ILVMTHDWDLLYENPLEELAEGFDVHEPELSSSF-SF-KSPISWRGDGKYFATLSEFCNSSKLH-KRLKVWERDSG---- 212 (1323)
Q Consensus 140 V~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~-~~-i~~isWspDG~~lAtvss~d~~~~~d-~~IrVWd~~~G---- 212 (1323)
|..|.. +....+-. . -|...+ .. ...+.+++||+++. +.+.. +.. ..+.+-+..++
T Consensus 204 v~~~~~-gt~~~~d~--------l----vfe~~~~~~~~~~~~~s~d~~~l~-i~~~~---~~~~s~v~~~d~~~~~~~~ 266 (414)
T PF02897_consen 204 VYRHKL-GTPQSEDE--------L----VFEEPDEPFWFVSVSRSKDGRYLF-ISSSS---GTSESEVYLLDLDDGGSPD 266 (414)
T ss_dssp EEEEET-TS-GGG-E--------E----EEC-TTCTTSEEEEEE-TTSSEEE-EEEES---SSSEEEEEEEECCCTTTSS
T ss_pred EEEEEC-CCChHhCe--------e----EEeecCCCcEEEEEEecCcccEEE-EEEEc---cccCCeEEEEeccccCCCc
Confidence 333322 22222200 0 121111 12 57899999999987 55433 223 56888888554
Q ss_pred -ceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCee--EEEEEeccCCCCcEEEEEEccCCCeeEE
Q 000736 213 -TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE--RSSFDINEQIDSTVELLKWNCMSDLLAA 289 (1323)
Q Consensus 213 -~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~--~~~f~l~~~~~~~V~~laWSpDg~~LA~ 289 (1323)
.........++....+... .+.++..+..+. ....|.-.+.+... +....+..+ ...+.--.++..+..|+.
T Consensus 267 ~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a---~~~~l~~~~l~~~~~~~~~~~l~~~-~~~~~l~~~~~~~~~Lvl 341 (414)
T PF02897_consen 267 AKPKLLSPREDGVEYYVDHH-GDRLYILTNDDA---PNGRLVAVDLADPSPAEWWTVLIPE-DEDVSLEDVSLFKDYLVL 341 (414)
T ss_dssp -SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT----TT-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEEETTEEEE
T ss_pred CCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCC---CCcEEEEecccccccccceeEEcCC-CCceeEEEEEEECCEEEE
Confidence 4444444455555555554 444444443321 23455545433222 111112111 222233334455666666
Q ss_pred EEccCCCCeEEEEEee
Q 000736 290 VVRFEEYDSVKICFFS 305 (1323)
Q Consensus 290 ~~~d~~~~~V~LW~~~ 305 (1323)
.........|++|+..
T Consensus 342 ~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 342 SYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEETTEEEEEEEETT
T ss_pred EEEECCccEEEEEECC
Confidence 6555434467888877
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00089 Score=52.49 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=34.9
Q ss_pred CceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEe
Q 000736 212 GTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE 256 (1323)
Q Consensus 212 G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e 256 (1323)
|++..++.+|.+.+.+|+|+|++++||+++.| ..|++|+
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D------~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSD------GTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETT------SEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCC------CEEEEEC
Confidence 46778888999999999999999999999986 5799996
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.064 Score=69.47 Aligned_cols=159 Identities=9% Similarity=-0.006 Sum_probs=102.7
Q ss_pred HHHhcCHHHHHHHHHHcCC----CcH---HHHHHHHHHHhcchHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHH
Q 000736 941 DLRLQRFENALKHIVSMGD----SYH---ADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFED 1008 (1323)
Q Consensus 941 d~~L~rye~Al~~l~~~g~----~~~---~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~e 1008 (1323)
....|++++|+..+.++-. +.. -.......+. +.|++|++.+ .+|. ...+...+|..+...+++++
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~-g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~e 264 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAV-GKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSRE 264 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchh
Confidence 4557899999988876311 101 1122344567 7888888877 2333 35667778999999999986
Q ss_pred ----HHHHHHhcCCH----HHH----HHHHHHhCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000736 1009 ----AATTYFCCSSL----EKA----MKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1323)
Q Consensus 1009 ----Aa~~y~~ag~~----~kA----l~~y~~ag~W~~al~lA~~l-~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1323)
|..+|.++-.. ..+ ..+|...|+|++|+...++. ...|+. ......++..+...|++.+|...|.+
T Consensus 265 A~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~-~~a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 265 AKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDL-PYVRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 67777776322 122 35566778888887665542 112222 24556688889999999999999887
Q ss_pred hcC-CHHH------HHHHHHHhcCHHHHHHHHHh
Q 000736 1076 YCG-DVTN------GISLLIDARDWEEALRVAFM 1102 (1323)
Q Consensus 1076 yl~-d~e~------Av~~~i~~~~w~eA~rla~~ 1102 (1323)
.+. +++. +..+|...+++++|+....+
T Consensus 344 al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~ 377 (656)
T PRK15174 344 LAREKGVTSKWNRYAAAALLQAGKTSEAESVFEH 377 (656)
T ss_pred HHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 541 2222 23467888999999876443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.041 Score=72.60 Aligned_cols=48 Identities=10% Similarity=0.167 Sum_probs=25.4
Q ss_pred CcHHHHHHHHHHHHhhcCCCCCcchhHHhHHhhcCCCccHHHHHHHHHHHHh
Q 000736 810 NKVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRE 861 (1323)
Q Consensus 810 ~KV~~iC~a~~~~l~~~~~~~~~~~~~ilT~~v~~~pp~le~aL~~i~~l~~ 861 (1323)
++...-...+.++++.. ++... ...+-.+|... .+.++|+..+.+.-+
T Consensus 97 g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~--g~~~~Al~~l~~al~ 144 (765)
T PRK10049 97 GQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRA--GRHWDELRAMTQALP 144 (765)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHC--CCHHHHHHHHHHHHH
Confidence 45555666677776653 22222 22222333333 347778777766643
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.034 Score=62.21 Aligned_cols=185 Identities=15% Similarity=0.033 Sum_probs=114.0
Q ss_pred CcEEEEEEc---CCCC-eEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEee
Q 000736 117 GGVRFISPS---PDGD-LLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLS 192 (1323)
Q Consensus 117 ~~I~~~awS---PDG~-~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvs 192 (1323)
.++..|.|+ -||. .|+-+-..|.|.+.-.+.+. ....+.+.. ++.++. ....++-|++-|.-++ ++
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~-ss~~L~~ls-~~ki~~-------~~~lslD~~~~~~~i~-vs 139 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDE-SSVHLRGLS-SKKISV-------VEALSLDISTSGTKIF-VS 139 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccce-eeeeecccc-hhhhhh-------eeeeEEEeeccCceEE-EE
Confidence 456666665 2445 56777778888877554332 222222221 111110 0236889999998877 65
Q ss_pred ccccccCCCCEEEEEECCCCceee--eeccCCCceeEEEEccCC-CeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec-
Q 000736 193 EFCNSSKLHKRLKVWERDSGTLQA--SSELKAFMGAVLEWMPSG-ANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN- 268 (1323)
Q Consensus 193 s~d~~~~~d~~IrVWd~~~G~l~~--t~e~~~~~v~slawsPdG-~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~- 268 (1323)
- .++.+-+-+-..+.+.. +.++|+...+..+|+-.- +++.+|++| ..+..||..- -++|...
T Consensus 140 ~------s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD------~~l~~~D~R~--p~~~i~~n 205 (339)
T KOG0280|consen 140 D------SRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDD------GSLSCWDIRI--PKTFIWHN 205 (339)
T ss_pred c------CCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCC------ceEEEEEecC--Ccceeeec
Confidence 3 23556644443666666 677888877777776433 678888886 4699998431 1233332
Q ss_pred -cCCCCcEEEEEEcc-CCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEec-CCc-EEEEEccCCC
Q 000736 269 -EQIDSTVELLKWNC-MSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLR-RDG-IRFMWHPTKP 332 (1323)
Q Consensus 269 -~~~~~~V~~laWSp-Dg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~-~~~-~~v~Wsp~~~ 332 (1323)
..++..|.+|.=|| ++.++|+|++|. .|++||+.|.. +.+.-.. ..+ +.+.|+|...
T Consensus 206 ~kvH~~GV~SI~ss~~~~~~I~TGsYDe---~i~~~DtRnm~----kPl~~~~v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 206 SKVHTSGVVSIYSSPPKPTYIATGSYDE---CIRVLDTRNMG----KPLFKAKVGGGVWRIKHHPEIF 266 (339)
T ss_pred ceeeecceEEEecCCCCCceEEEecccc---ceeeeehhccc----CccccCccccceEEEEecchhh
Confidence 12355688887775 688999999998 99999999853 2332111 123 7888998765
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0033 Score=72.67 Aligned_cols=136 Identities=19% Similarity=0.242 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHcCCCcHHHHHHHHHHHhcchHHHHhhc-CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhcCCHHHHH-
Q 000736 946 RFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI-TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAM- 1023 (1323)
Q Consensus 946 rye~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~-~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl- 1023 (1323)
+|++|...|.++|. .++.. +.|++|.+.| . -..+....++....-+.|.+|+.+|.+. ++++|+
T Consensus 30 ~~e~Aa~~y~~Aa~--------~fk~~-~~~~~A~~ay~k----Aa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~ 95 (282)
T PF14938_consen 30 DYEEAADLYEKAAN--------CFKLA-KDWEKAAEAYEK----AADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIE 95 (282)
T ss_dssp HHHHHHHHHHHHHH--------HHHHT-T-CHHHHHHHHH----HHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHH
T ss_pred CHHHHHHHHHHHHH--------HHHHH-hccchhHHHHHH----HHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHH
Confidence 47777766665542 33444 4555555444 1 0111122222333334445555555554 444444
Q ss_pred ------HHHHHhCCHHHHHHHHhh----cC-C--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHh
Q 000736 1024 ------KAYRASGNWSGVLTVAGL----LK-L--GKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDA 1090 (1323)
Q Consensus 1024 ------~~y~~ag~W~~al~lA~~----l~-~--~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~e~Av~~~i~~ 1090 (1323)
+.|...|+++.+-.+... +. . +.++-.+.+..-++.+...+....|..++. .+..++++.
T Consensus 96 ~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~-------~~A~l~~~l 168 (282)
T PF14938_consen 96 CYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLL-------KAADLYARL 168 (282)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHH-------HHHHHHHHT
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHH-------HHHHHHHHh
Confidence 444555555544222211 11 0 122223344444444444444444444433 466778888
Q ss_pred cCHHHHHHHHHh
Q 000736 1091 RDWEEALRVAFM 1102 (1323)
Q Consensus 1091 ~~w~eA~rla~~ 1102 (1323)
++|++|+.+-.+
T Consensus 169 ~~y~~A~~~~e~ 180 (282)
T PF14938_consen 169 GRYEEAIEIYEE 180 (282)
T ss_dssp T-HHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 888888876543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.042 Score=75.91 Aligned_cols=182 Identities=13% Similarity=0.087 Sum_probs=107.7
Q ss_pred cCCcccchHhHHHHhcCCc-----hhccccHHHHhcCHHHHHHHHHHcCCCcHH----------------HHHHHHHHHh
Q 000736 915 QRDPKEFLPYLQELESMPP-----LLMRYTIDLRLQRFENALKHIVSMGDSYHA----------------DCLNLMKKYA 973 (1323)
Q Consensus 915 qkDPkeYLpfL~~L~~l~~-----~~~~~~Id~~L~rye~Al~~l~~~g~~~~~----------------~ale~~~~~~ 973 (1323)
+.|+.+=+..++++-.+.+ .+.........+++++|+.+|.++-..... ...+.....
T Consensus 508 ~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~- 586 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS- 586 (1157)
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC-
Confidence 3444444555555444421 111223334467777887777765211000 011223456
Q ss_pred cchHHHHhhc-CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhcCCH--------HHHHHHHHHhCCHHHHHHHHhhcC-
Q 000736 974 QLFPLGLKLI-TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL--------EKAMKAYRASGNWSGVLTVAGLLK- 1043 (1323)
Q Consensus 974 ~ly~~AL~L~-~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~--------~kAl~~y~~ag~W~~al~lA~~l~- 1043 (1323)
+.+++|++++ ..|.. ..+...+|+.+...+++++|...|.++=.. -....+|...|++++|+.+...+.
T Consensus 587 G~~~eA~~~l~~~p~~-~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 587 GKEAEAEALLRQQPPS-TRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred CCHHHHHHHHHhCCCC-chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 6778888877 44432 235567888888888888888888866321 233467778888888877666542
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCC----H---------HHHHHHHHHhcCHHHHHHH
Q 000736 1044 LGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGD----V---------TNGISLLIDARDWEEALRV 1099 (1323)
Q Consensus 1044 ~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d----~---------e~Av~~~i~~~~w~eA~rl 1099 (1323)
..++. ......+|..+...|++.+|.++|.+-+.. + ..+..+|...+++++|+..
T Consensus 666 ~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~ 733 (1157)
T PRK11447 666 TANDS-LNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALET 733 (1157)
T ss_pred cCCCC-hHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 12222 234556788888889999998888773321 1 1224567777888888765
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.054 Score=72.50 Aligned_cols=155 Identities=15% Similarity=0.102 Sum_probs=87.4
Q ss_pred cHHHH--hcCHHHHHHHHHHcCCC--cHHHHHHHHHHHhcchHHHHhhc---------CCcHHHHHHHHHHHHHHhcccC
Q 000736 939 TIDLR--LQRFENALKHIVSMGDS--YHADCLNLMKKYAQLFPLGLKLI---------TDPAKMEQVLEAWADHLSDVKC 1005 (1323)
Q Consensus 939 ~Id~~--L~rye~Al~~l~~~g~~--~~~~ale~~~~~~~ly~~AL~L~---------~d~~~~~~i~~~~A~~L~~~~~ 1005 (1323)
.|++| .|++++|.+.|.++..+ -+...+..+.++ +.+++|++++ .|...+..++.. +...|.
T Consensus 530 Li~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~-G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a----~~~~g~ 604 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAH-GKGSMAVELFNRMVESGVNPDEVTFISLLCA----CSRSGM 604 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCCcccHHHHHHH----HhhcCh
Confidence 44544 35677777777766221 145556666777 7777777777 122233333322 345677
Q ss_pred HHHHHHHHHhcC----------CHHHHHHHHHHhCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000736 1006 FEDAATTYFCCS----------SLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1323)
Q Consensus 1006 ~~eAa~~y~~ag----------~~~kAl~~y~~ag~W~~al~lA~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1323)
+++|..+|.... -|.--+++|.++|++++|..+..+++..|+. .+...|...+...|+.+.|..+..+
T Consensus 605 v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~--~~~~aLl~ac~~~~~~e~~e~~a~~ 682 (857)
T PLN03077 605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDP--AVWGALLNACRIHRHVELGELAAQH 682 (857)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHH
Confidence 777777776543 1344557777777777777777766544432 2344444444445555544433322
Q ss_pred h-------cCCHHHHHHHHHHhcCHHHHHHHH
Q 000736 1076 Y-------CGDVTNGISLLIDARDWEEALRVA 1100 (1323)
Q Consensus 1076 y-------l~d~e~Av~~~i~~~~w~eA~rla 1100 (1323)
- .+-+-.-..+|...++|++|.++-
T Consensus 683 l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr 714 (857)
T PLN03077 683 IFELDPNSVGYYILLCNLYADAGKWDEVARVR 714 (857)
T ss_pred HHhhCCCCcchHHHHHHHHHHCCChHHHHHHH
Confidence 1 122444456677777777776654
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=96.94 E-value=1.2 Score=53.43 Aligned_cols=104 Identities=12% Similarity=0.138 Sum_probs=65.0
Q ss_pred CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEE
Q 000736 31 EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE 110 (1323)
Q Consensus 31 ~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e 110 (1323)
.++.||+++.++.++.+|. .+++..|+.. ++..+. ..+ ..++..+.+++.+|.+.-+|..++++.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~--~tG~~~W~~~-~~~~~~-------~~p-----~v~~~~v~v~~~~g~l~ald~~tG~~~ 128 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDA--ETGKRLWRVD-LDERLS-------GGV-----GADGGLVFVGTEKGEVIALDAEDGKEL 128 (377)
T ss_pred ECCEEEEECCCCeEEEEEc--cCCcEeeeec-CCCCcc-------cce-----EEcCCEEEEEcCCCEEEEEECCCCcEe
Confidence 4789999999988999998 6888777754 221111 111 235778888899999999999876653
Q ss_pred EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEee-cCcee
Q 000736 111 VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLL 150 (1323)
Q Consensus 111 ~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~-~~d~~ 150 (1323)
-.-...+.+.+.-.- ++..+..++.++.|..++. +++.+
T Consensus 129 W~~~~~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~ 168 (377)
T TIGR03300 129 WRAKLSSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERL 168 (377)
T ss_pred eeeccCceeecCCEE-ECCEEEEECCCCeEEEEEcCCCcee
Confidence 211112223221111 3456777778888887763 44443
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.023 Score=63.45 Aligned_cols=186 Identities=11% Similarity=0.009 Sum_probs=112.6
Q ss_pred eEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecC-CCEEEEEeCCCcEEEE
Q 000736 24 QFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLME-KEALIVGTSSGLLLLH 102 (1323)
Q Consensus 24 ~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spd-g~~La~as~dG~I~lw 102 (1323)
..+.|++-+..+|+.-+++.+-.++.+ ....-++.+ .+.|.| ..+-.+|+-. -+.+-+|++||.+.-|
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t---~~~le~vq~----wk~He~----E~Wta~f~~~~pnlvytGgDD~~l~~~ 193 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYET---EMVLEKVQT----WKVHEF----EAWTAKFSDKEPNLVYTGGDDGSLSCW 193 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecc---eeeeeeccc----ccccce----eeeeeecccCCCceEEecCCCceEEEE
Confidence 345566767777777666666544442 110001111 344544 4566666543 3677899999999999
Q ss_pred eCCC-CeE--EEeceecCcEEEEEEcC-CCCeEEEEeCCccEEEEe-e-cCceeeeeeecccCCCceeccCccccCCCCe
Q 000736 103 SVDG-NAT--EVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILVMT-H-DWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1323)
Q Consensus 103 ~~~~-~~~--e~vg~~~~~I~~~awSP-DG~~LA~~s~d~tV~l~t-~-~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i 176 (1323)
|..- +.+ .....|..||.++.=|| ++..||+|+-|.+|.+|+ | -.+|+....+ .++|
T Consensus 194 D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-----------------~GGV 256 (339)
T KOG0280|consen 194 DIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV-----------------GGGV 256 (339)
T ss_pred EecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc-----------------ccce
Confidence 9872 222 22345788999998876 588999999999998885 3 2344433322 2689
Q ss_pred EEEEEecCCc--EEEEeeccccccCCCCEEEEEECCCCc---eeeeeccCCCceeEEEEccCCCeEEEEecC
Q 000736 177 SPISWRGDGK--YFATLSEFCNSSKLHKRLKVWERDSGT---LQASSELKAFMGAVLEWMPSGANIAAVYDR 243 (1323)
Q Consensus 177 ~~isWspDG~--~lAtvss~d~~~~~d~~IrVWd~~~G~---l~~t~e~~~~~v~slawsPdG~lIAs~s~d 243 (1323)
++|.|+|--. .||++ -+. |-..+++=|- -++ ...+...|+++...-.|..--..||+++.-
T Consensus 257 WRi~~~p~~~~~lL~~C-Mh~----G~ki~~~~~~-~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFY 322 (339)
T KOG0280|consen 257 WRIKHHPEIFHRLLAAC-MHN----GAKILDSSDK-VLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFY 322 (339)
T ss_pred EEEEecchhhhHHHHHH-Hhc----CceEEEeccc-ccchheeeeccccccceeeccccccccceeeeeecc
Confidence 9999999644 34412 221 1122332222 233 333445577777777885555679998753
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.094 Score=67.51 Aligned_cols=185 Identities=16% Similarity=0.077 Sum_probs=115.7
Q ss_pred HhcCCcccchHhHHHHhcCCch-----hccccHHHHhcCHHHHHHHHHHc---CCCcH----HHHHHHHHHHhcchHHHH
Q 000736 913 NSQRDPKEFLPYLQELESMPPL-----LMRYTIDLRLQRFENALKHIVSM---GDSYH----ADCLNLMKKYAQLFPLGL 980 (1323)
Q Consensus 913 ~sqkDPkeYLpfL~~L~~l~~~-----~~~~~Id~~L~rye~Al~~l~~~---g~~~~----~~ale~~~~~~~ly~~AL 980 (1323)
..+.|+.+=+..+++.-.+++. .....+...+|+|++|+..|.++ .+++. ..+ .+.... +.|++|+
T Consensus 342 ~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg-~~~~~~-g~~~~A~ 419 (615)
T TIGR00990 342 CLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRA-QLHFIK-GEFAQAG 419 (615)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHc-CCHHHHH
Confidence 3466777777777777666432 45567778899999999998764 23222 222 233556 7888888
Q ss_pred hhc-----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhcCC-----H---HHHHHHHHHhCCHHHHHHHHhh-cCCCH
Q 000736 981 KLI-----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSS-----L---EKAMKAYRASGNWSGVLTVAGL-LKLGK 1046 (1323)
Q Consensus 981 ~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~-----~---~kAl~~y~~ag~W~~al~lA~~-l~~~~ 1046 (1323)
+.| .+|... ..+...|..+...+++++|...|.++-. . -..-.+|...|+|++|+....+ +.+.+
T Consensus 420 ~~~~kal~l~P~~~-~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p 498 (615)
T TIGR00990 420 KDYQKSIDLDPDFI-FSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEK 498 (615)
T ss_pred HHHHHHHHcCccCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 887 344433 4466788999999999999999998732 1 1234667788888888765433 21122
Q ss_pred H------HHHHHHHHHHHHHHHcCChHHHHHHHHHhc-CCH------HHHHHHHHHhcCHHHHHHHH
Q 000736 1047 D------EVAKLAQELCEELQALGKPGEAAKIALDYC-GDV------TNGISLLIDARDWEEALRVA 1100 (1323)
Q Consensus 1047 ~------~~~~l~~~la~~L~~~~~~~eAa~i~~~yl-~d~------e~Av~~~i~~~~w~eA~rla 1100 (1323)
+ .+..+.......+...|++.+|..+|.+-+ .++ .....+|.+.+++++|+...
T Consensus 499 ~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~ 565 (615)
T TIGR00990 499 ETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLF 565 (615)
T ss_pred ccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 1 111222222333445688999998887732 121 23455667777888887654
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.2 Score=60.53 Aligned_cols=200 Identities=12% Similarity=0.079 Sum_probs=127.0
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeC---CC
Q 000736 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTS---SG 97 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~---dG 97 (1323)
.....++++++..+|.... ++.|...|. .+... ... ...+.....++++|+++.+.++.. ++
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~--~~~~~---~~~---------~~vG~~P~~~~~~~~~~~vYV~n~~~~~~ 140 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDT--ATNTV---LGS---------IPVGLGPVGLAVDPDGKYVYVANAGNGNN 140 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcC--cccce---eeE---------eeeccCCceEEECCCCCEEEEEecccCCc
Confidence 4567889999999999875 355777775 23321 111 112447889999999999888876 68
Q ss_pred cEEEEeCCCCeEE---EeceecCcEEEEEEcCCCCeEEEEe-CCccEEEEeecCceeeeeeecccCCCceeccCccccCC
Q 000736 98 LLLLHSVDGNATE---VVGRVEGGVRFISPSPDGDLLGVTT-GFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSF 173 (1323)
Q Consensus 98 ~I~lw~~~~~~~e---~vg~~~~~I~~~awSPDG~~LA~~s-~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~ 173 (1323)
+|.+.|..+.++- .+|. .+ ..++++|||+.+..+. .+++|.+.+-....+.+ ... ...+ +..
T Consensus 141 ~vsvid~~t~~~~~~~~vG~--~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~---~~~--~~~~------~~~ 206 (381)
T COG3391 141 TVSVIDAATNKVTATIPVGN--TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR---GSV--GSLV------GVG 206 (381)
T ss_pred eEEEEeCCCCeEEEEEecCC--Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec---ccc--cccc------ccC
Confidence 8888888876543 3333 23 8899999999666665 67788775422222211 000 0001 111
Q ss_pred CCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCC-ceeEEEEccCCCeEEEEecCCCCCCCCeE
Q 000736 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF-MGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1323)
Q Consensus 174 ~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~-~v~slawsPdG~lIAs~s~d~~~~~~~~V 252 (1323)
..-..+.|+|||+++- +.-.. ..++.+.+.|..++.....-.+... ....++..|+|+.+-+.... ...|
T Consensus 207 ~~P~~i~v~~~g~~~y-V~~~~---~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~-----~~~V 277 (381)
T COG3391 207 TGPAGIAVDPDGNRVY-VANDG---SGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ-----GGTV 277 (381)
T ss_pred CCCceEEECCCCCEEE-EEecc---CCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC-----CCeE
Confidence 2336799999999654 33211 2246888899878877765333333 45678999999998887553 2456
Q ss_pred EEEeCC
Q 000736 253 VFYERN 258 (1323)
Q Consensus 253 ~~~e~n 258 (1323)
.+.+..
T Consensus 278 ~vid~~ 283 (381)
T COG3391 278 SVIDGA 283 (381)
T ss_pred EEEeCC
Confidence 666643
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.5 Score=53.48 Aligned_cols=206 Identities=10% Similarity=0.068 Sum_probs=101.0
Q ss_pred CCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecc-CCCceeEEEEccCCCeEEEEecCCCCCCCCeE
Q 000736 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL-KAFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1323)
Q Consensus 174 ~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~-~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V 252 (1323)
+.+..|+|.||+..|++|. ++.+.|--.+. +|+++....- ..+-...|++--+|.++.+..+ .+.+
T Consensus 22 ~e~SGLTy~pd~~tLfaV~------d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er------~~~L 88 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQ------DEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEER------DQRL 88 (248)
T ss_dssp S-EEEEEEETTTTEEEEEE------TTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETT------TTEE
T ss_pred CCccccEEcCCCCeEEEEE------CCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcC------CCcE
Confidence 3478999999866555375 34578888898 8998876432 1344589999888876665533 3567
Q ss_pred EEEeC--CC--eeE---EEEEeccC--CCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeC---CeeEEEeE---EE-
Q 000736 253 VFYER--NG--LER---SSFDINEQ--IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN---NHWYLKYE---IR- 316 (1323)
Q Consensus 253 ~~~e~--nG--l~~---~~f~l~~~--~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n---~~wylkq~---l~- 316 (1323)
.+++. ++ ... ..+.+..+ +...+..|+|+|.++.|.++-... -.+|+.+.. ........ +.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~---P~~l~~~~~~~~~~~~~~~~~~~~~~ 165 (248)
T PF06977_consen 89 YIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERK---PKRLYEVNGFPGGFDLFVSDDQDLDD 165 (248)
T ss_dssp EEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESS---SEEEEEEESTT-SS--EEEE-HHHH-
T ss_pred EEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCC---ChhhEEEccccCccceeecccccccc
Confidence 77764 11 111 22333322 334689999999988888877665 466777653 11110000 00
Q ss_pred --EecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCE
Q 000736 317 --YLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAV 394 (1323)
Q Consensus 317 --~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l~~~~~V 394 (1323)
....+...+.+||.++. |.+.+....... .. -.+|+.+...+|....-..+ ..+ ...
T Consensus 166 ~~~~~~d~S~l~~~p~t~~-lliLS~es~~l~---~~-----------d~~G~~~~~~~L~~g~~gl~---~~~---~Qp 224 (248)
T PF06977_consen 166 DKLFVRDLSGLSYDPRTGH-LLILSDESRLLL---EL-----------DRQGRVVSSLSLDRGFHGLS---KDI---PQP 224 (248)
T ss_dssp HT--SS---EEEEETTTTE-EEEEETTTTEEE---EE------------TT--EEEEEE-STTGGG-S---S------SE
T ss_pred ccceeccccceEEcCCCCe-EEEEECCCCeEE---EE-----------CCCCCEEEEEEeCCcccCcc---ccc---CCc
Confidence 00123367888998876 444443322211 11 11455566666654211000 000 124
Q ss_pred EEEEEecCCCCCEEEEEECCCcEEE
Q 000736 395 TEMAFYSKSSKNCLAAILSDGCLCV 419 (1323)
Q Consensus 395 ~~VaFSpdg~~~~LAs~s~Dgti~l 419 (1323)
-.|+|.++| + |-+.+.-+.+..
T Consensus 225 EGIa~d~~G--~-LYIvsEpNlfy~ 246 (248)
T PF06977_consen 225 EGIAFDPDG--N-LYIVSEPNLFYR 246 (248)
T ss_dssp EEEEE-TT-----EEEEETTTEEEE
T ss_pred cEEEECCCC--C-EEEEcCCceEEE
Confidence 578899988 4 444444444433
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.049 Score=60.17 Aligned_cols=126 Identities=12% Similarity=-0.058 Sum_probs=81.0
Q ss_pred CCEEEEEECCCCceeeeeccCCC--ceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCC--CeeEEEEEeccCCCCcEE
Q 000736 201 HKRLKVWERDSGTLQASSELKAF--MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN--GLERSSFDINEQIDSTVE 276 (1323)
Q Consensus 201 d~~IrVWd~~~G~l~~t~e~~~~--~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~n--Gl~~~~f~l~~~~~~~V~ 276 (1323)
|+++|+.+. +|.....-- |.. .+.+++.||||++.++.++- ..|-+|+.. |..+-...+ .+.+..-.
T Consensus 137 dht~k~~~~-~~~s~~~~~-h~~~~~~ns~~~snd~~~~~~Vgds------~~Vf~y~id~~sey~~~~~~-a~t~D~gF 207 (344)
T KOG4532|consen 137 DHTGKTMVV-SGDSNKFAV-HNQNLTQNSLHYSNDPSWGSSVGDS------RRVFRYAIDDESEYIENIYE-APTSDHGF 207 (344)
T ss_pred CcceeEEEE-ecCccccee-eccccceeeeEEcCCCceEEEecCC------CcceEEEeCCccceeeeeEe-cccCCCce
Confidence 578888888 444322211 211 26899999999999999874 568788743 322221111 22234567
Q ss_pred EEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEE---ecCCc-EEEEEccCCCcEEEEEe
Q 000736 277 LLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRY---LRRDG-IRFMWHPTKPLQLICWT 339 (1323)
Q Consensus 277 ~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~---~~~~~-~~v~Wsp~~~~~L~~~~ 339 (1323)
..+||.....+|++..|+ ++-|||+.+..- .-.++.. +++.. ..+.|+|-|+.-|...+
T Consensus 208 ~~S~s~~~~~FAv~~Qdg---~~~I~DVR~~~t-pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~s 270 (344)
T KOG4532|consen 208 YNSFSENDLQFAVVFQDG---TCAIYDVRNMAT-PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFIS 270 (344)
T ss_pred eeeeccCcceEEEEecCC---cEEEEEeccccc-chhhhcccCCCCCCceEEEEecCCCcceEEEEe
Confidence 899999999999999999 999999986431 1111111 11222 77889998877665555
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.77 E-value=7.6e-05 Score=87.37 Aligned_cols=156 Identities=13% Similarity=0.054 Sum_probs=130.9
Q ss_pred chhccccHHHHhcCHHHHHHHHHHcCCCcHHHHHHHHHHHhcchHHHHhhc--CCcHHHHHHHHHHHHHHhcccCHHHHH
Q 000736 933 PLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI--TDPAKMEQVLEAWADHLSDVKCFEDAA 1010 (1323)
Q Consensus 933 ~~~~~~~Id~~L~rye~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~--~d~~~~~~i~~~~A~~L~~~~~~~eAa 1010 (1323)
.++-...++--+.+|++|.+++.+... .-+|++|..+. .|+.|+-|+ .+|..+..+-..|++.|+..+++..+.
T Consensus 47 ~nlavaca~tiv~~YD~agq~~le~n~--tg~aldm~wDk--egdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl 122 (615)
T KOG2247|consen 47 HNLAVACANTIVIYYDKAGQVILELNP--TGKALDMAWDK--EGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL 122 (615)
T ss_pred CceehhhhhhHHHhhhhhcceecccCC--chhHhhhhhcc--ccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH
Confidence 467777888899999999999999965 79999999885 899999998 899999999999999999999999999
Q ss_pred HHHHhcCCH------HHH--------HHHHHHhC-CHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000736 1011 TTYFCCSSL------EKA--------MKAYRASG-NWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1323)
Q Consensus 1011 ~~y~~ag~~------~kA--------l~~y~~ag-~W~~al~lA~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1323)
..|++.+.. ++- .+.-+..| +.|+..++|..+. + ..+..+++..|...+++.||+.+|..
T Consensus 123 l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lE-d----~vil~dcd~~L~v~~qegeta~ltev 197 (615)
T KOG2247|consen 123 LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLE-D----YVILCDCDNTLSVTTQEGETASLTEV 197 (615)
T ss_pred HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEeccc-c----eeeecCcHHHHHHhhhccceeeeeec
Confidence 999997532 211 13344455 6777777776543 2 35778999999999999999999999
Q ss_pred hcCCHHHHHHHHHHhcCHHHHHH
Q 000736 1076 YCGDVTNGISLLIDARDWEEALR 1098 (1323)
Q Consensus 1076 yl~d~e~Av~~~i~~~~w~eA~r 1098 (1323)
.+.|+.|--.|.+.+.|..|-.
T Consensus 198 -ggepdnm~~~y~k~n~w~kage 219 (615)
T KOG2247|consen 198 -GGEPDNMDFFYGKVNGWGKAGE 219 (615)
T ss_pred -cCccchhhhheeeeeccccccc
Confidence 9999999999999999988743
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.68 Score=53.93 Aligned_cols=226 Identities=16% Similarity=0.162 Sum_probs=106.0
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1323)
.+..++|. +.+.-|.+...+.|++-.- -++ .|....++.+ . + ..-...+|.|.. .+. .+++..|. .+
T Consensus 18 ~l~dV~F~-d~~~G~~VG~~g~il~T~D---GG~-tW~~~~~~~~--~-~--~~~~l~~I~f~~-~~g-~ivG~~g~-ll 84 (302)
T PF14870_consen 18 PLLDVAFV-DPNHGWAVGAYGTILKTTD---GGK-TWQPVSLDLD--N-P--FDYHLNSISFDG-NEG-WIVGEPGL-LL 84 (302)
T ss_dssp -EEEEEES-SSS-EEEEETTTEEEEESS---TTS-S-EE-----S----------EEEEEEEET-TEE-EEEEETTE-EE
T ss_pred ceEEEEEe-cCCEEEEEecCCEEEEECC---CCc-cccccccCCC--c-c--ceeeEEEEEecC-Cce-EEEcCCce-EE
Confidence 67777777 6666777777776765432 222 3654322211 0 0 012467787754 344 44555664 45
Q ss_pred EeCCCC-eEEEec---eecCcEEEEEEcCCCCeEEEEeCCccEEEEe---ecCceeeeeeecccCCCceeccCccccCCC
Q 000736 102 HSVDGN-ATEVVG---RVEGGVRFISPSPDGDLLGVTTGFGQILVMT---HDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1323)
Q Consensus 102 w~~~~~-~~e~vg---~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t---~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~ 174 (1323)
...+++ ..+.+. ..++....+..-.++ ....++..|.|..=+ +.|+.+..- ...
T Consensus 85 ~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~iy~T~DgG~tW~~~~~~------------------~~g 145 (302)
T PF14870_consen 85 HTTDGGKTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGAIYRTTDGGKTWQAVVSE------------------TSG 145 (302)
T ss_dssp EESSTTSS-EE----TT-SS-EEEEEEEETT-EEEEEETT--EEEESSTTSSEEEEE-S---------------------
T ss_pred EecCCCCCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCcEEEeCCCCCCeeEcccC------------------Ccc
Confidence 555553 344321 223333444433444 444455666664322 234432211 113
Q ss_pred CeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEE
Q 000736 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1323)
Q Consensus 175 ~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~ 254 (1323)
.+..+.-++||+|+| +++. ...++-||.-...-..........+.++.|+|+|++...+ + ...|.+
T Consensus 146 s~~~~~r~~dG~~va-vs~~------G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~------Gg~~~~ 211 (302)
T PF14870_consen 146 SINDITRSSDGRYVA-VSSR------GNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-R------GGQIQF 211 (302)
T ss_dssp -EEEEEE-TTS-EEE-EETT------SSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-T------TTEEEE
T ss_pred eeEeEEECCCCcEEE-EECc------ccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-C------CcEEEE
Confidence 567788899999999 7742 2567788762211222233345678999999999987765 3 245655
Q ss_pred EeCCCeeEEEEEe---cc-CCCCcEEEEEEccCCCeeEEEEccC
Q 000736 255 YERNGLERSSFDI---NE-QIDSTVELLKWNCMSDLLAAVVRFE 294 (1323)
Q Consensus 255 ~e~nGl~~~~f~l---~~-~~~~~V~~laWSpDg~~LA~~~~d~ 294 (1323)
-+ .+....+|.- +. .....+.+++|.+++++.|++....
T Consensus 212 s~-~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~ 254 (302)
T PF14870_consen 212 SD-DPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGT 254 (302)
T ss_dssp EE--TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-
T ss_pred cc-CCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCcc
Confidence 55 1112223322 11 1123589999999999999887654
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0048 Score=81.86 Aligned_cols=187 Identities=10% Similarity=0.114 Sum_probs=126.9
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe-E---EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceee
Q 000736 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-T---EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY 151 (1323)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~-~---e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~ 151 (1323)
..|..|.=+|-...-++|+.||.|++|.-..++ + ...| ...|+.+.|+.+|.-..++.+||-+-+|...-.+..
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g--~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~ 2286 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAG--NSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYT 2286 (2439)
T ss_pred CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccC--cchhhhhhhcccCCceeeeccCCceeecccCCccee
Confidence 357777778888899999999999998765432 2 2334 377999999999999999999999998865422222
Q ss_pred eeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECC-CCceeeeeccCCCceeEEEE
Q 000736 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAFMGAVLEW 230 (1323)
Q Consensus 152 e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~-~G~l~~t~e~~~~~v~slaw 230 (1323)
... -|+.....+.|=+ ..+| .++.. ..++.+.+||.. .+..-.+...|++..+.+++
T Consensus 2287 s~q----------------chnk~~~Df~Fi~--s~~~-tag~s---~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~ 2344 (2439)
T KOG1064|consen 2287 SWQ----------------CHNKALSDFRFIG--SLLA-TAGRS---SDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAY 2344 (2439)
T ss_pred ccc----------------cCCccccceeeee--hhhh-ccccC---CCCCcccchhcccCcccceeeeecCCCceEEEE
Confidence 211 2223334444444 4456 33322 346899999963 23332333568899999999
Q ss_pred ccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCC
Q 000736 231 MPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1323)
Q Consensus 231 sPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~ 307 (1323)
-|.-++|.||+++ +.|.+||.-- + .++ +. ... |. --.++..++..+ .++||+++..
T Consensus 2345 ~P~~qllisggr~------G~v~l~D~rq---r--ql~--h~--~~~--~~-~~~~f~~~ss~g---~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2345 APKHQLLISGGRK------GEVCLFDIRQ---R--QLR--HT--FQA--LD-TREYFVTGSSEG---NIKIWRLSEF 2400 (2439)
T ss_pred cCcceEEEecCCc------CcEEEeehHH---H--HHH--HH--hhh--hh-hhheeeccCccc---ceEEEEcccc
Confidence 9999999999985 5699999421 1 111 11 011 44 456777888877 8999999864
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.015 Score=71.36 Aligned_cols=276 Identities=13% Similarity=0.151 Sum_probs=144.6
Q ss_pred ecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeee-eeecccCCCceeccCccccCCC-CeEEEEEecCCc---EEE
Q 000736 115 VEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYE-NPLEELAEGFDVHEPELSSSFS-FKSPISWRGDGK---YFA 189 (1323)
Q Consensus 115 ~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e-~~l~~~~~~~~Vs~tqf~~~~~-~i~~isWspDG~---~lA 189 (1323)
+++++.+++.+|-|+-+|+++.-|-+.+ +.+ ++.+- ..++.. ....|..+||..|.. ..+-|+||+.-. +||
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~gl~i~-dld-~p~~ppr~l~h~-tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA 99 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQGLYII-DLD-DPFTPPRWLHHI-TPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLA 99 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcCeEEE-ecc-CCCCCceeeecc-CcchhcceecccCCCCceeEEecCcchhhhhhhh
Confidence 4788999999999999999999876543 211 11110 011110 111222344443332 234455555443 233
Q ss_pred EeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCC-eEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec
Q 000736 190 TLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYERNGLERSSFDIN 268 (1323)
Q Consensus 190 tvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~-lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~ 268 (1323)
.++ ++.|. ..+-+|...+..+-|.|+-. .+|+++.|. .|..|+...-..--+...
T Consensus 100 -~ss-------~~aIe----------f~lhghsraitd~n~~~q~pdVlatcsvdt------~vh~wd~rSp~~p~ys~~ 155 (1081)
T KOG0309|consen 100 -KSS-------SNAIE----------FVLHGHSRAITDINFNPQHPDVLATCSVDT------YVHAWDMRSPHRPFYSTS 155 (1081)
T ss_pred -cCC-------ccceE----------EEEecCccceeccccCCCCCcceeeccccc------cceeeeccCCCcceeeee
Confidence 221 12332 22335667788999999865 678888763 588898532221111111
Q ss_pred cCCCCcEEEEEEcc-CCCeeEEEEccCCCCeEEEEEeeCC---eeEEEeEEEEec----C-CcEEEEEccCCCcEEEEEe
Q 000736 269 EQIDSTVELLKWNC-MSDLLAAVVRFEEYDSVKICFFSNN---HWYLKYEIRYLR----R-DGIRFMWHPTKPLQLICWT 339 (1323)
Q Consensus 269 ~~~~~~V~~laWSp-Dg~~LA~~~~d~~~~~V~LW~~~n~---~wylkq~l~~~~----~-~~~~v~Wsp~~~~~L~~~~ 339 (1323)
.- ...-..++||- |+.+||++.... |.+|+.... ...+|..+...- . ......|+++...++..|+
T Consensus 156 ~w-~s~asqVkwnyk~p~vlasshg~~----i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~ 230 (1081)
T KOG0309|consen 156 SW-RSAASQVKWNYKDPNVLASSHGND----IFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWD 230 (1081)
T ss_pred cc-cccCceeeecccCcchhhhccCCc----eEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeec
Confidence 11 12355799995 788999886554 999998632 122333222100 0 0134568888777778877
Q ss_pred cCCcEEEEEE-------EEeee--eCCCeeEEE--EeCCEEEEeecC----CcC---CCCCceeeee-cCCCCEEEEEEe
Q 000736 340 LDGQITTYNF-------IWTTA--VMENSTALV--IDGSKILVTPLS----LSL---MPPPMYLFSL-KFPTAVTEMAFY 400 (1323)
Q Consensus 340 ~~g~~~~~~~-------~~~~~--~~d~~~v~v--iDg~~l~lt~l~----~~~---vPppm~~~~l-~~~~~V~~VaFS 400 (1323)
.+......+. +|-.. |-+.|.+.. ..|+.+.+...+ .|+ .|.|. +++ +|++.|...-|-
T Consensus 231 y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pV--h~F~GH~D~V~eFlWR 308 (1081)
T KOG0309|consen 231 YSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPV--HTFVGHDDVVLEFLWR 308 (1081)
T ss_pred ccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcce--eeecCcchHHHHHhhh
Confidence 5443322111 22211 222232221 223322222111 122 23343 344 577777655554
Q ss_pred cCCC--------CCEEEEEECCCcEEEEECCC
Q 000736 401 SKSS--------KNCLAAILSDGCLCVVDLPA 424 (1323)
Q Consensus 401 pdg~--------~~~LAs~s~Dgti~lw~~~~ 424 (1323)
..++ +-.|++=+.|.++++|-++.
T Consensus 309 ~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 309 KRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred hcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 4432 14699999999999999875
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.15 Score=58.08 Aligned_cols=148 Identities=16% Similarity=0.087 Sum_probs=87.8
Q ss_pred CEEEEEEecCCCEEEEEe--CCC-cEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe--ecCceee
Q 000736 77 SITAFDYLMEKEALIVGT--SSG-LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT--HDWDLLY 151 (1323)
Q Consensus 77 ~V~~v~~spdg~~La~as--~dG-~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t--~~~d~~~ 151 (1323)
.+.+.+.|+||+.+|... .++ .+.++...+....... ...+..-+|+|||.+.+...++....++. ..... .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~-~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG-E 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc--CCccccccccCCCCEEEEEcCCCceEEEEecCCCcc-e
Confidence 689999999999998877 333 3444544443222222 24789999999999988888777666552 11111 1
Q ss_pred eeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEE--CC-CCceeee------eccCC
Q 000736 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWE--RD-SGTLQAS------SELKA 222 (1323)
Q Consensus 152 e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd--~~-~G~l~~t------~e~~~ 222 (1323)
...+... .....|..+.|||||..+|.+.. + .+++.|.|=- +. .|..... .....
T Consensus 102 ~~~v~~~------------~~~~~I~~l~vSpDG~RvA~v~~-~---~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~ 165 (253)
T PF10647_consen 102 PVEVDWP------------GLRGRITALRVSPDGTRVAVVVE-D---GGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLL 165 (253)
T ss_pred eEEeccc------------ccCCceEEEEECCCCcEEEEEEe-c---CCCCeEEEEEEEeCCCCCcceeccceEeccccc
Confidence 1111110 01126789999999999994442 2 2235555432 21 4411111 11223
Q ss_pred CceeEEEEccCCCeEEEEecC
Q 000736 223 FMGAVLEWMPSGANIAAVYDR 243 (1323)
Q Consensus 223 ~~v~slawsPdG~lIAs~s~d 243 (1323)
..+.+++|.+++.+++.+...
T Consensus 166 ~~v~~v~W~~~~~L~V~~~~~ 186 (253)
T PF10647_consen 166 SDVTDVAWSDDSTLVVLGRSA 186 (253)
T ss_pred CcceeeeecCCCEEEEEeCCC
Confidence 456899999999987776553
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.42 Score=64.09 Aligned_cols=157 Identities=15% Similarity=0.074 Sum_probs=82.5
Q ss_pred hcCHHHHHHHHHHc---C--CC--cHHHHHHHHHHHhcchHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHHHH
Q 000736 944 LQRFENALKHIVSM---G--DS--YHADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAAT 1011 (1323)
Q Consensus 944 L~rye~Al~~l~~~---g--~~--~~~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eAa~ 1011 (1323)
.|++++|++.|.++ | ++ -+.-.+....+. +.+++|.+++ .+......++...-+-+...+++++|..
T Consensus 367 ~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~-g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACL-GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhcc-chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 45677777777654 1 11 134455555566 6666666665 1112223344455555566677777777
Q ss_pred HHHhcCC-----HHHHHHHHHHhCCHHHHHHHHhhc--CCCHHHH--HH-------------------------------
Q 000736 1012 TYFCCSS-----LEKAMKAYRASGNWSGVLTVAGLL--KLGKDEV--AK------------------------------- 1051 (1323)
Q Consensus 1012 ~y~~ag~-----~~kAl~~y~~ag~W~~al~lA~~l--~~~~~~~--~~------------------------------- 1051 (1323)
+|.+..+ +.--+..|...|++.+|+.+-.++ +..|+.. ..
T Consensus 446 vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~ 525 (857)
T PLN03077 446 VFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF 525 (857)
T ss_pred HHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccce
Confidence 7766543 344555666666666665544332 1111111 00
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhcCC---HHHHHHHHHHhcCHHHHHHHHH
Q 000736 1052 LAQELCEELQALGKPGEAAKIALDYCGD---VTNGISLLIDARDWEEALRVAF 1101 (1323)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~yl~d---~e~Av~~~i~~~~w~eA~rla~ 1101 (1323)
+...+.+.+.+.|+.++|..+|.+.-.| +..-|..|++.+++++|+.+-.
T Consensus 526 ~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~ 578 (857)
T PLN03077 526 LPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFN 578 (857)
T ss_pred echHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHH
Confidence 1223334455566666666666553111 3455666777777777776654
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0056 Score=74.34 Aligned_cols=80 Identities=21% Similarity=0.428 Sum_probs=62.2
Q ss_pred ecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeecc
Q 000736 115 VEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEF 194 (1323)
Q Consensus 115 ~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~ 194 (1323)
...+|.-+.|+|-=.++|+++.+|.|.+---.|.-+..++++... ...+++|+|||+.+| ++..
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~---------------v~~sL~W~~DGklla-Vg~k 82 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGEN---------------VTASLCWRPDGKLLA-VGFK 82 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCc---------------cceeeeecCCCCEEE-EEec
Confidence 346789999999999999999999998765456666556554332 125999999999999 8853
Q ss_pred ccccCCCCEEEEEECCCCceee
Q 000736 195 CNSSKLHKRLKVWERDSGTLQA 216 (1323)
Q Consensus 195 d~~~~~d~~IrVWd~~~G~l~~ 216 (1323)
||+|++-|.++|..+.
T Consensus 83 ------dG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 83 ------DGTIRLHDVEKGGRLV 98 (665)
T ss_pred ------CCeEEEEEccCCCcee
Confidence 5899999997776544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.017 Score=68.52 Aligned_cols=128 Identities=20% Similarity=0.260 Sum_probs=90.6
Q ss_pred cHHHHHHHHHhccC------hhHHHHHHHHhcCCcccchHhHHHHhcCCc-----hhccccHHHHhcCHHHHHHHHHHcC
Q 000736 890 DSEAVYEAALGLYD------LNLAAIVALNSQRDPKEFLPYLQELESMPP-----LLMRYTIDLRLQRFENALKHIVSMG 958 (1323)
Q Consensus 890 d~~~Ly~~ALg~yD------~~lal~VAq~sqkDPkeYLpfL~~L~~l~~-----~~~~~~Id~~L~rye~Al~~l~~~g 958 (1323)
++-..|+.|..+-- +.++++.|++ -||-+|..++++-.++++ .+.|..|.--|+.|+.|+.-|-++-
T Consensus 344 ~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~--~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai 421 (606)
T KOG0547|consen 344 GAQEDFDAAIKLDPAFNSLYIKRAAAYADE--NQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAI 421 (606)
T ss_pred hhhhhHHHHHhcCcccchHHHHHHHHHhhh--hccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 66677888776643 2445555554 578889999999888843 6889999999999999999999874
Q ss_pred CCc-------HHHHHHHHHHHhcchHHHHhhc-CCc---HHHHHHHHHHHHHHhcccCHHHHHHHHHhcCCHHH
Q 000736 959 DSY-------HADCLNLMKKYAQLFPLGLKLI-TDP---AKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEK 1021 (1323)
Q Consensus 959 ~~~-------~~~ale~~~~~~~ly~~AL~L~-~d~---~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~k 1021 (1323)
.=. .+.|.-.++.| -+..++..| ... ....++...+|+-|.++++|.+|..+|..|-..+.
T Consensus 422 ~L~pe~~~~~iQl~~a~Yr~~--k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 422 SLDPENAYAYIQLCCALYRQH--KIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred hcChhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 222 24444444443 345555555 111 12456888999999999999999999999866543
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.54 Score=56.54 Aligned_cols=229 Identities=10% Similarity=0.032 Sum_probs=114.1
Q ss_pred CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEE
Q 000736 31 EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE 110 (1323)
Q Consensus 31 ~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e 110 (1323)
+++.+|+++.++.++.+|. .+++..|+.. ++ +.+.+.-.. .+..+.+++.+|.|..||..++++.
T Consensus 104 ~~~~v~v~~~~g~l~ald~--~tG~~~W~~~-~~-----------~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~ 168 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDA--EDGKELWRAK-LS-----------SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERL 168 (377)
T ss_pred cCCEEEEEcCCCEEEEEEC--CCCcEeeeec-cC-----------ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCcee
Confidence 4788999988889999999 6888777643 11 111111111 2456777888999999999876542
Q ss_pred EeceecCcE------EEEEEcCCCCeEEEEeCCccEEEEe-ecCceeeeeeecccCCCceeccCccccCCCCeEEEEEec
Q 000736 111 VVGRVEGGV------RFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG 183 (1323)
Q Consensus 111 ~vg~~~~~I------~~~awSPDG~~LA~~s~d~tV~l~t-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWsp 183 (1323)
-.-...... .+... .+ ..+.+++.++.+..++ .++..+.+...........+ ........+... .
T Consensus 169 W~~~~~~~~~~~~~~~sp~~-~~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~-----~~~~~~~~~p~~-~ 240 (377)
T TIGR03300 169 WTYSRVTPALTLRGSASPVI-AD-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTEL-----ERLVDVDGDPVV-D 240 (377)
T ss_pred eEEccCCCceeecCCCCCEE-EC-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCch-----hhhhccCCccEE-E
Confidence 110001111 01111 12 3566666777776554 23332222111100000000 000000011112 2
Q ss_pred CCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeC-CCeeE
Q 000736 184 DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLER 262 (1323)
Q Consensus 184 DG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~-nGl~~ 262 (1323)
+|..++ ++ .++.+..||..+|+.....+. ... ... ..+|..|..++.+ ..|..++. +|...
T Consensus 241 ~~~vy~-~~-------~~g~l~a~d~~tG~~~W~~~~-~~~-~~p--~~~~~~vyv~~~~------G~l~~~d~~tG~~~ 302 (377)
T TIGR03300 241 GGQVYA-VS-------YQGRVAALDLRSGRVLWKRDA-SSY-QGP--AVDDNRLYVTDAD------GVVVALDRRSGSEL 302 (377)
T ss_pred CCEEEE-EE-------cCCEEEEEECCCCcEEEeecc-CCc-cCc--eEeCCEEEEECCC------CeEEEEECCCCcEE
Confidence 454444 32 247899999989998876552 111 111 2345566555543 45777775 45332
Q ss_pred EEE-EeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCe
Q 000736 263 SSF-DINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1323)
Q Consensus 263 ~~f-~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~ 308 (1323)
-++ .+. .....+.. ..+..|.+++.++ .|.+|+..+.+
T Consensus 303 W~~~~~~---~~~~ssp~--i~g~~l~~~~~~G---~l~~~d~~tG~ 341 (377)
T TIGR03300 303 WKNDELK---YRQLTAPA--VVGGYLVVGDFEG---YLHWLSREDGS 341 (377)
T ss_pred Ecccccc---CCccccCE--EECCEEEEEeCCC---EEEEEECCCCC
Confidence 221 111 01111111 2466777888877 78899876543
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.059 Score=74.47 Aligned_cols=158 Identities=11% Similarity=-0.035 Sum_probs=98.8
Q ss_pred cccHHHHhcCHHHHHHHHHHc---CCC----cHHHHHHHHHHHhcchHHHHhhc-----CCcHHHHHHHHHHHHHHhccc
Q 000736 937 RYTIDLRLQRFENALKHIVSM---GDS----YHADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVK 1004 (1323)
Q Consensus 937 ~~~Id~~L~rye~Al~~l~~~---g~~----~~~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~ 1004 (1323)
...+....|+|++|++.|.++ .++ ++..|. .+.+. +.|++|+..+ .+|. .......+|.++...+
T Consensus 467 ~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~-~~~~~-G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~ 543 (1157)
T PRK11447 467 QAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQ-DLRQA-GQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSD 543 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHc-CCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCC
Confidence 344555678999999988875 232 123343 34566 7888888776 2333 2344556788888889
Q ss_pred CHHHHHHHHHhcCCH------------------HHHHHHHHHhCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCh
Q 000736 1005 CFEDAATTYFCCSSL------------------EKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKP 1066 (1323)
Q Consensus 1005 ~~~eAa~~y~~ag~~------------------~kAl~~y~~ag~W~~al~lA~~l~~~~~~~~~l~~~la~~L~~~~~~ 1066 (1323)
++++|...|.++-.- -...++|...|+.++|+.+.+..+.+ ..+...+|..+.+.|++
T Consensus 544 ~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~----~~~~~~La~~~~~~g~~ 619 (1157)
T PRK11447 544 RDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPS----TRIDLTLADWAQQRGDY 619 (1157)
T ss_pred CHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCC----chHHHHHHHHHHHcCCH
Confidence 999988887765311 12235667778888887777654322 23445677777888888
Q ss_pred HHHHHHHHHhcC----CHH---HHHHHHHHhcCHHHHHHHHH
Q 000736 1067 GEAAKIALDYCG----DVT---NGISLLIDARDWEEALRVAF 1101 (1323)
Q Consensus 1067 ~eAa~i~~~yl~----d~e---~Av~~~i~~~~w~eA~rla~ 1101 (1323)
.+|..+|.+-+. +++ ....+|...+++++|+....
T Consensus 620 ~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 620 AAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888777766331 111 23455666677777765443
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.99 Score=51.61 Aligned_cols=228 Identities=19% Similarity=0.202 Sum_probs=127.0
Q ss_pred eeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000736 27 ALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDG 106 (1323)
Q Consensus 27 ~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~~~ 106 (1323)
|.+..++.||+|++++ ++.++.. ......++. ....|..+...|+-+.|++-+ ||.+.+++++.
T Consensus 2 c~~~~~~~L~vGt~~G-l~~~~~~--~~~~~~~i~------------~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~ 65 (275)
T PF00780_consen 2 CADSWGDRLLVGTEDG-LYVYDLS--DPSKPTRIL------------KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDS 65 (275)
T ss_pred CcccCCCEEEEEECCC-EEEEEec--CCccceeEe------------ecceEEEEEEecccCEEEEEc-CCccEEEEchh
Confidence 3466789999999998 8888872 211111111 112499999999988877664 69999999864
Q ss_pred CeE-E---------------EeceecCcEEEEE---EcCCCCeEEEEeCCccEEEEeec-----C-ceeeeeeecccCCC
Q 000736 107 NAT-E---------------VVGRVEGGVRFIS---PSPDGDLLGVTTGFGQILVMTHD-----W-DLLYENPLEELAEG 161 (1323)
Q Consensus 107 ~~~-e---------------~vg~~~~~I~~~a---wSPDG~~LA~~s~d~tV~l~t~~-----~-d~~~e~~l~~~~~~ 161 (1323)
-.. . .+.. ..++...+ -...+..|+.+... +|.++... | ....|..+.
T Consensus 66 l~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~f~~~~~~~~~~~L~va~kk-~i~i~~~~~~~~~f~~~~ke~~lp----- 138 (275)
T PF00780_consen 66 LEPVSTSAPLAFPKSRSLPTKLPE-TKGVSFFAVNGGHEGSRRLCVAVKK-KILIYEWNDPRNSFSKLLKEISLP----- 138 (275)
T ss_pred hccccccccccccccccccccccc-cCCeeEEeeccccccceEEEEEECC-EEEEEEEECCcccccceeEEEEcC-----
Confidence 111 0 1111 23455544 33344556655554 77776422 2 333444333
Q ss_pred ceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCc-----------eeEEEE
Q 000736 162 FDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFM-----------GAVLEW 230 (1323)
Q Consensus 162 ~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~-----------v~slaw 230 (1323)
+.+..++|.+ ..++ ++. .+.+.+.|..+|............ ...+--
T Consensus 139 ------------~~~~~i~~~~--~~i~-v~~-------~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 196 (275)
T PF00780_consen 139 ------------DPPSSIAFLG--NKIC-VGT-------SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQ 196 (275)
T ss_pred ------------CCcEEEEEeC--CEEE-EEe-------CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEE
Confidence 3558999994 4455 553 256888888777765544221111 112222
Q ss_pred ccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeE
Q 000736 231 MPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1323)
Q Consensus 231 sPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wy 310 (1323)
-+++.+|.+... .-.|.+.+|...+...+.-. ....++++ ...+|...+.+ .|.+|++.+..
T Consensus 197 ~~~~e~Ll~~~~--------~g~fv~~~G~~~r~~~i~W~--~~p~~~~~--~~pyli~~~~~----~iEV~~~~~~~-- 258 (275)
T PF00780_consen 197 LSDNEFLLCYDN--------IGVFVNKNGEPSRKSTIQWS--SAPQSVAY--SSPYLIAFSSN----SIEVRSLETGE-- 258 (275)
T ss_pred eCCceEEEEecc--------eEEEEcCCCCcCcccEEEcC--CchhEEEE--ECCEEEEECCC----EEEEEECcCCc--
Confidence 234666665322 34466777764432222211 12344554 23355555544 59999999875
Q ss_pred EEeEEEE
Q 000736 311 LKYEIRY 317 (1323)
Q Consensus 311 lkq~l~~ 317 (1323)
+.|.+..
T Consensus 259 lvQ~i~~ 265 (275)
T PF00780_consen 259 LVQTIPL 265 (275)
T ss_pred EEEEEEC
Confidence 4666654
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.45 Score=58.07 Aligned_cols=188 Identities=16% Similarity=0.080 Sum_probs=95.5
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe-------EEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCc
Q 000736 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-------TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWD 148 (1323)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~-------~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d 148 (1323)
+.|+++.|..+ +.|++...||.++++|..+.. ++..+-.+..|.+..+..+| +|+.++++.+.+-+ +++
T Consensus 81 ~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~-n~~ 156 (410)
T PF04841_consen 81 GRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVN-NID 156 (410)
T ss_pred CCEEEEEECCC-CeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEe-Ccc
Confidence 78999999985 566677899999999997654 11222222333333334355 55566777775543 222
Q ss_pred -eeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeE
Q 000736 149 -LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAV 227 (1323)
Q Consensus 149 -~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~s 227 (1323)
+.....+.... .. .+.++.+........++.++...+..+ . +..+.+-+...... . ...+.+..
T Consensus 157 ~~~~~~~~~~~p--~~--~~~~~~~~~~~~i~~l~~~~~~~i~~~-~------g~~i~~i~~~~~~~---i-~~~~~i~~ 221 (410)
T PF04841_consen 157 EPVKLRRLPEIP--GL--WTKFHWWPSWTVIPLLSSDRVVEILLA-N------GETIYIIDENSFKQ---I-DSDGPIIK 221 (410)
T ss_pred ccchhhccccCC--Cc--ccccccccccccceEeecCcceEEEEe-c------CCEEEEEEcccccc---c-cCCCCeEE
Confidence 21101111000 00 001111111111145666766555222 1 24555333312111 1 12457899
Q ss_pred EEEccCCCeEEEEecCCCCCCCCeEEEEeCCC-eeEEEEEeccCCCCcEEEEEEccCCCeeEEE
Q 000736 228 LEWMPSGANIAAVYDRKSENKCPSIVFYERNG-LERSSFDINEQIDSTVELLKWNCMSDLLAAV 290 (1323)
Q Consensus 228 lawsPdG~lIAs~s~d~~~~~~~~V~~~e~nG-l~~~~f~l~~~~~~~V~~laWSpDg~~LA~~ 290 (1323)
++.||+|+.||.-..++ .+.+...+- ....++.+. .......+.|.-+..++..+
T Consensus 222 iavSpng~~iAl~t~~g------~l~v~ssDf~~~~~e~~~~--~~~~p~~~~WCG~dav~l~~ 277 (410)
T PF04841_consen 222 IAVSPNGKFIALFTDSG------NLWVVSSDFSEKLCEFDTD--SKSPPKQMAWCGNDAVVLSW 277 (410)
T ss_pred EEECCCCCEEEEEECCC------CEEEEECcccceeEEeecC--cCCCCcEEEEECCCcEEEEe
Confidence 99999999999988743 354444321 122333332 12345688887765554444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=96.46 E-value=1.7 Score=51.75 Aligned_cols=96 Identities=22% Similarity=0.167 Sum_probs=53.6
Q ss_pred EeeecCCCEEEEEeC---CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEE
Q 000736 26 SALDIEQNRLFFASS---ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLH 102 (1323)
Q Consensus 26 ~~~d~~~~~l~~~s~---~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw 102 (1323)
-+|..||+.|.|+|+ ..++|..|+ .+++ +.+|-.+ +++...+...+|+++.|+-...+..++-.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL--~t~~----i~QLTdg-------~g~~~~g~~~s~~~~~~~Yv~~~~~l~~v 107 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDL--ATGE----ITQLTDG-------PGDNTFGGFLSPDDRALYYVKNGRSLRRV 107 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEET--TT-E----EEE---S-------S-B-TTT-EE-TTSSEEEEEETTTEEEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEc--ccCE----EEECccC-------CCCCccceEEecCCCeEEEEECCCeEEEE
Confidence 478999999999987 448999999 6665 3443322 11122235568999998776667788889
Q ss_pred eCCCCeEEEecee-cCcEEEEEEc--CCCCeEEEE
Q 000736 103 SVDGNATEVVGRV-EGGVRFISPS--PDGDLLGVT 134 (1323)
Q Consensus 103 ~~~~~~~e~vg~~-~~~I~~~awS--PDG~~LA~~ 134 (1323)
|++|.+.+.+=.+ ++.+-...|+ .|+..+|-.
T Consensus 108 dL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~ 142 (386)
T PF14583_consen 108 DLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGI 142 (386)
T ss_dssp ETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEE
T ss_pred ECCcCcEEEEEECCcccccccceeeCCCccEEEEE
Confidence 9999765433222 4445567784 456665443
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.11 Score=65.01 Aligned_cols=179 Identities=11% Similarity=0.045 Sum_probs=107.4
Q ss_pred EEEecCCCEEEEEe-CCCcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCC---c-cEEEEeecCceeeeeee
Q 000736 81 FDYLMEKEALIVGT-SSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGF---G-QILVMTHDWDLLYENPL 155 (1323)
Q Consensus 81 v~~spdg~~La~as-~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d---~-tV~l~t~~~d~~~e~~l 155 (1323)
+-++|||+.+-..+ ..+.+..+|.++.++..--.+++.-..++++|||+++.+.+.+ + ++..|+.
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a---------- 267 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMA---------- 267 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeecc----------
Confidence 44577887664333 3456677888775543111124455678999999999888632 2 3333321
Q ss_pred cccCCCceeccCccccCCCCeEEE------EEecCCcEEEEeeccccccCCCCEEEEEECCC----C-ceeeeeccCCCc
Q 000736 156 EELAEGFDVHEPELSSSFSFKSPI------SWRGDGKYFATLSEFCNSSKLHKRLKVWERDS----G-TLQASSELKAFM 224 (1323)
Q Consensus 156 ~~~~~~~~Vs~tqf~~~~~~i~~i------sWspDG~~lAtvss~d~~~~~d~~IrVWd~~~----G-~l~~t~e~~~~~ 224 (1323)
... +.+..+ .+.+||++.- ++ +++|.|.|..+ | +.... -+....
T Consensus 268 ~e~---------------d~~vvfni~~iea~vkdGK~~~-V~--------gn~V~VID~~t~~~~~~~v~~y-IPVGKs 322 (635)
T PRK02888 268 AER---------------DWVVVFNIARIEEAVKAGKFKT-IG--------GSKVPVVDGRKAANAGSALTRY-VPVPKN 322 (635)
T ss_pred ccC---------------ceEEEEchHHHHHhhhCCCEEE-EC--------CCEEEEEECCccccCCcceEEE-EECCCC
Confidence 111 111222 3356888765 53 26899999866 3 23332 223444
Q ss_pred eeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCee-------------EEEEEeccCCCCcEEEEEEccCCCeeEEEE
Q 000736 225 GAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE-------------RSSFDINEQIDSTVELLKWNCMSDLLAAVV 291 (1323)
Q Consensus 225 v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~-------------~~~f~l~~~~~~~V~~laWSpDg~~LA~~~ 291 (1323)
.+.+++||||+++.+++.. .++|.+.|..-.. ..+..+ ...-...+|.++|....+-.
T Consensus 323 PHGV~vSPDGkylyVankl-----S~tVSVIDv~k~k~~~~~~~~~~~~vvaevev----GlGPLHTaFDg~G~aytslf 393 (635)
T PRK02888 323 PHGVNTSPDGKYFIANGKL-----SPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL----GLGPLHTAFDGRGNAYTTLF 393 (635)
T ss_pred ccceEECCCCCEEEEeCCC-----CCcEEEEEChhhhhhhhccCCccceEEEeecc----CCCcceEEECCCCCEEEeEe
Confidence 5889999999999888764 3578888754322 111111 11234678999998777777
Q ss_pred ccCCCCeEEEEEeeC
Q 000736 292 RFEEYDSVKICFFSN 306 (1323)
Q Consensus 292 ~d~~~~~V~LW~~~n 306 (1323)
-|. .|--|++..
T Consensus 394 ~ds---qv~kwn~~~ 405 (635)
T PRK02888 394 LDS---QIVKWNIEA 405 (635)
T ss_pred ecc---eeEEEehHH
Confidence 777 788899864
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.51 Score=52.31 Aligned_cols=219 Identities=11% Similarity=0.002 Sum_probs=113.0
Q ss_pred CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEeceecCcEE
Q 000736 41 ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVR 120 (1323)
Q Consensus 41 ~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~ 120 (1323)
++.|..||+ .+++..|+.. +.. + .+..... ..+++..+.+++.+|.|..||..++++.-.-...+.+.
T Consensus 2 ~g~l~~~d~--~tG~~~W~~~-----~~~-~---~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~ 69 (238)
T PF13360_consen 2 DGTLSALDP--RTGKELWSYD-----LGP-G---IGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPIS 69 (238)
T ss_dssp TSEEEEEET--TTTEEEEEEE-----CSS-S---CSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGG
T ss_pred CCEEEEEEC--CCCCEEEEEE-----CCC-C---CCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccc
Confidence 456778887 6777667653 210 0 1222222 34467778888999999999998876531111112211
Q ss_pred EEEEcCCCCeEEEEeCCccEEEEe-ecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccC
Q 000736 121 FISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSK 199 (1323)
Q Consensus 121 ~~awSPDG~~LA~~s~d~tV~l~t-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~ 199 (1323)
..- ..++..+.+++.++.|..++ .+++.+........+... + ......... |..++ ++.
T Consensus 70 ~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~---------~~~~~~~~~--~~~~~-~~~------ 129 (238)
T PF13360_consen 70 GAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG-V---------RSSSSPAVD--GDRLY-VGT------ 129 (238)
T ss_dssp SGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS-T---------B--SEEEEE--TTEEE-EEE------
T ss_pred cee-eecccccccccceeeeEecccCCcceeeeeccccccccc-c---------ccccCceEe--cCEEE-EEe------
Confidence 111 33556677777777777776 566655543221111000 0 011222223 55555 332
Q ss_pred CCCEEEEEECCCCceeeeeccCCCc-----------eeEEEEccCCCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEe
Q 000736 200 LHKRLKVWERDSGTLQASSELKAFM-----------GAVLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDI 267 (1323)
Q Consensus 200 ~d~~IrVWd~~~G~l~~t~e~~~~~-----------v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l 267 (1323)
.++.|..+|..+|+++......... ...+.+. +| .|..++.+. ..+.+ + .+|... +..
T Consensus 130 ~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g-----~~~~~-d~~tg~~~--w~~ 199 (238)
T PF13360_consen 130 SSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDG-----RVVAV-DLATGEKL--WSK 199 (238)
T ss_dssp TCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTS-----SEEEE-ETTTTEEE--EEE
T ss_pred ccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCC-----eEEEE-ECCCCCEE--EEe
Confidence 2478999998899997765432211 1222222 44 443333321 23444 5 344322 222
Q ss_pred ccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCe
Q 000736 268 NEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1323)
Q Consensus 268 ~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~ 308 (1323)
+ . ..+..+ ..+++..|.+++.++ .|..||..+++
T Consensus 200 ~-~--~~~~~~-~~~~~~~l~~~~~~~---~l~~~d~~tG~ 233 (238)
T PF13360_consen 200 P-I--SGIYSL-PSVDGGTLYVTSSDG---RLYALDLKTGK 233 (238)
T ss_dssp C-S--S-ECEC-EECCCTEEEEEETTT---EEEEEETTTTE
T ss_pred c-C--CCccCC-ceeeCCEEEEEeCCC---EEEEEECCCCC
Confidence 2 1 112221 347777888777666 78888887753
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.52 Score=55.45 Aligned_cols=83 Identities=22% Similarity=0.314 Sum_probs=65.5
Q ss_pred HHHHHHhCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHh
Q 000736 1023 MKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFM 1102 (1323)
Q Consensus 1023 l~~y~~ag~W~~al~lA~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~e~Av~~~i~~~~w~eA~rla~~ 1102 (1323)
+++|...++|+++...|.. .-+|= =+.-.++.+.+.|...+|....-+ +.+ ++-+++|++.++|.+|...|.+
T Consensus 215 i~aLa~~~~w~eL~~fa~s-kKsPI----GyepFv~~~~~~~~~~eA~~yI~k-~~~-~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 215 IKALAENKDWDELEKFAKS-KKSPI----GYEPFVEACLKYGNKKEASKYIPK-IPD-EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHhcCCHHHHHHHHhC-CCCCC----ChHHHHHHHHHCCCHHHHHHHHHh-CCh-HHHHHHHHHCCCHHHHHHHHHH
Confidence 3788888999999888864 22321 133467777889999998876666 888 9999999999999999999999
Q ss_pred cCCchhHHHH
Q 000736 1103 HRREDLITKV 1112 (1323)
Q Consensus 1103 ~~~~dLie~V 1112 (1323)
.+..+.+..|
T Consensus 288 ~kd~~~L~~i 297 (319)
T PF04840_consen 288 EKDIDLLKQI 297 (319)
T ss_pred cCCHHHHHHH
Confidence 9977777654
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0011 Score=78.10 Aligned_cols=164 Identities=14% Similarity=0.141 Sum_probs=114.3
Q ss_pred cccccccccccceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCE
Q 000736 11 PLNLELQSKDEILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEA 89 (1323)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~ 89 (1323)
...+++..|+ .+..++||.++|.+.+..+ .+.|+.||++ +.. ..+|+.+... .-.-.+|++-+..
T Consensus 66 q~~le~n~tg-~aldm~wDkegdvlavlAek~~piylwd~n--~ey----tqqLE~gg~~-------s~sll~wsKg~~e 131 (615)
T KOG2247|consen 66 QVILELNPTG-KALDMAWDKEGDVLAVLAEKTGPIYLWDVN--SEY----TQQLESGGTS-------SKSLLAWSKGTPE 131 (615)
T ss_pred ceecccCCch-hHhhhhhccccchhhhhhhcCCCeeechhh--hhh----HHHHhccCcc-------hHHHHhhccCCcc
Confidence 3344677777 8999999999999999876 5679999994 322 2344433211 1122789999999
Q ss_pred EEEEeCCCcEEEEeCCCCe-EEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccC---C-----
Q 000736 90 LIVGTSSGLLLLHSVDGNA-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELA---E----- 160 (1323)
Q Consensus 90 La~as~dG~I~lw~~~~~~-~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~---~----- 160 (1323)
++++.-.|.+.|++..+.+ +...|.|...+.+++|.|.+ +.+.++.|.++.+++...+.+......... +
T Consensus 132 l~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~v~~qegeta~ltevggepdnm~~~y~k 210 (615)
T KOG2247|consen 132 LVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTLSVTTQEGETASLTEVGGEPDNMDFFYGK 210 (615)
T ss_pred ccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHHHHHhhhccceeeeeeccCccchhhhheee
Confidence 9999999999999998744 45678788999999999985 577788888877776655554333222221 0
Q ss_pred --C-----c---ee-c-----------------cCccccCCCCeEEEEEecCCcEEE
Q 000736 161 --G-----F---DV-H-----------------EPELSSSFSFKSPISWRGDGKYFA 189 (1323)
Q Consensus 161 --~-----~---~V-s-----------------~tqf~~~~~~i~~isWspDG~~lA 189 (1323)
+ . +| + ..+|+...+.+.++.|-.||....
T Consensus 211 ~n~w~kage~m~sVvsgKkhl~yak~nE~D~pval~fq~~~gni~cyrwylDg~i~i 267 (615)
T KOG2247|consen 211 VNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVALQFQEKYGNIHCYRWYLDGYILI 267 (615)
T ss_pred eeccccccceeeeeeecHHHHHHHhhcCCCCccceEeeecCCceeEEEEeccccccc
Confidence 0 0 00 0 236666677889999999997654
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.78 Score=53.63 Aligned_cols=128 Identities=13% Similarity=0.186 Sum_probs=72.9
Q ss_pred CcEEEEeCCCCeEEEeceecCc-EEEEEEcCCCCeEEEEeC----------CccEEEEe-ecCceeeeeeecccCCCcee
Q 000736 97 GLLLLHSVDGNATEVVGRVEGG-VRFISPSPDGDLLGVTTG----------FGQILVMT-HDWDLLYENPLEELAEGFDV 164 (1323)
Q Consensus 97 G~I~lw~~~~~~~e~vg~~~~~-I~~~awSPDG~~LA~~s~----------d~tV~l~t-~~~d~~~e~~l~~~~~~~~V 164 (1323)
+.|.++|.+++++ +|-++.+ .-.+..||||+.+.+++. ...|.+|+ .+-.+..|+.+.... ...+
T Consensus 17 ~rv~viD~d~~k~--lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~-R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKL--LGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKP-RAQV 93 (342)
T ss_dssp EEEEEEETTTTEE--EEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS--B--B
T ss_pred ceEEEEECCCCcE--EEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcc-hhee
Confidence 3678888887765 3333322 334678999999998753 22466675 455666777766431 0000
Q ss_pred ccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecC
Q 000736 165 HEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDR 243 (1323)
Q Consensus 165 s~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d 243 (1323)
-......+.|+||+++. +--..| ...|-|-|...++...... .+|-..-.-+.|+| +++.+.|
T Consensus 94 --------~~~~~~~~ls~dgk~~~-V~N~TP----a~SVtVVDl~~~kvv~ei~-~PGC~~iyP~~~~~--F~~lC~D 156 (342)
T PF06433_consen 94 --------VPYKNMFALSADGKFLY-VQNFTP----ATSVTVVDLAAKKVVGEID-TPGCWLIYPSGNRG--FSMLCGD 156 (342)
T ss_dssp --------S--GGGEEE-TTSSEEE-EEEESS----SEEEEEEETTTTEEEEEEE-GTSEEEEEEEETTE--EEEEETT
T ss_pred --------cccccceEEccCCcEEE-EEccCC----CCeEEEEECCCCceeeeec-CCCEEEEEecCCCc--eEEEecC
Confidence 01224578899999987 554433 3689999997777766433 34433333344433 4444444
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.22 Score=61.84 Aligned_cols=110 Identities=17% Similarity=0.161 Sum_probs=82.8
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1323)
.+...++|.-.+.+.++++.+.+|.++- ..++. .+ ++.+- ..+.++....|++....|.|+.+|.|.+
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R--~~~~~--~~--~~~~~------~~~~~~~~~vs~~e~lvAagt~~g~V~v 102 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNR--HTGEM--RK--LKNEG------ATGITCVRSVSSVEYLVAAGTASGRVSV 102 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEec--Cchhh--hc--ccccC------ccceEEEEEecchhHhhhhhcCCceEEe
Confidence 6777899999999999999999999987 45542 11 11110 1245777888999999999999999999
Q ss_pred EeCCCCe---EEEe----ceecCcEEEEEEcCCCCeEEEEeCCccEEEE
Q 000736 102 HSVDGNA---TEVV----GRVEGGVRFISPSPDGDLLGVTTGFGQILVM 143 (1323)
Q Consensus 102 w~~~~~~---~e~v----g~~~~~I~~~awSPDG~~LA~~s~d~tV~l~ 143 (1323)
+-++.+. ...+ ..|...|+|++||+||..|-+|...|+|..-
T Consensus 103 ~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~ 151 (726)
T KOG3621|consen 103 FQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLT 151 (726)
T ss_pred ehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEE
Confidence 8775421 1112 2246789999999999999999999998653
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.05 Score=69.61 Aligned_cols=129 Identities=19% Similarity=0.180 Sum_probs=86.5
Q ss_pred HhcchHHHHhhc---CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHhh---cCCC
Q 000736 972 YAQLFPLGLKLI---TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGL---LKLG 1045 (1323)
Q Consensus 972 ~~~ly~~AL~L~---~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~ag~W~~al~lA~~---l~~~ 1045 (1323)
.|++.++=+.|. .+++..+.|.+.-|+..+++|++++|..+|..||+|+++++.....- .+++..... ..-.
T Consensus 393 ~~G~i~~~~~Li~~~~~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~L--s~~l~~~~~~~~~~s~ 470 (613)
T PF04097_consen 393 TPGLIERRLSLIKFDDDEDFLREIIEQAAREAEERGRFEDAILLYHLAEEYDKVLSLLNRLL--SQVLSQPSSSSLSDSE 470 (613)
T ss_dssp EE-HHHHTGGGGT-SSSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHH--HHHHHCSSTSSSSSTT
T ss_pred ccceeeccccccCCCCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHH--HHHHcCccccccccch
Confidence 346666666665 56788999999999999999999999999999999999999986553 233321111 0012
Q ss_pred HHHHHHHHHHHHHHHHHcCCh-----HHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcC
Q 000736 1046 KDEVAKLAQELCEELQALGKP-----GEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHR 1104 (1323)
Q Consensus 1046 ~~~~~~l~~~la~~L~~~~~~-----~eAa~i~~~yl~d~e~Av~~~i~~~~w~eA~rla~~~~ 1104 (1323)
.+++..++..+.+.+...+.. ..+...+.. |-++-++...|-. ++|++|++...+-+
T Consensus 471 ~~~l~~la~~i~~~y~~~~~~~~~~~~~~~~t~~~-Ll~L~~ff~~~~~-g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 471 RERLIELAKEILERYKSNPHISSKVSRKNRETFQL-LLDLAEFFDLYHA-GQYEQALDIIEKLD 532 (613)
T ss_dssp TTSHHHHHHHHHHHHTTSHHHHTTS-HHHHHHHHH-HHHHHHHHHHHHT-T-HHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHhCcchHhhccHHHHHHHHH-HHHHHHHHHHHHc-CCHHHHHHHHHhCC
Confidence 356678888888888765443 333333333 5566666666554 47999998876644
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.32 E-value=5.9 Score=51.55 Aligned_cols=343 Identities=17% Similarity=0.128 Sum_probs=170.5
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEece--ecCcEEEEEEcCCCC------eEEEEeCCccEEEEee
Q 000736 74 PGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGR--VEGGVRFISPSPDGD------LLGVTTGFGQILVMTH 145 (1323)
Q Consensus 74 ~~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e~vg~--~~~~I~~~awSPDG~------~LA~~s~d~tV~l~t~ 145 (1323)
|.+.++...-+.+..++++|+.++.+.......+.+..+.+ .+..|.|+.+||-|+ ++|+|..+..+.+.+.
T Consensus 486 ~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~ 565 (1096)
T KOG1897|consen 486 PPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTF 565 (1096)
T ss_pred CCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEE
Confidence 33455555566667788888887877776665433332222 357799999998642 7888888877766554
Q ss_pred cCceeeee--eecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEE--EEECCCCceeeeeccC
Q 000736 146 DWDLLYEN--PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLK--VWERDSGTLQASSELK 221 (1323)
Q Consensus 146 ~~d~~~e~--~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~Ir--VWd~~~G~l~~t~e~~ 221 (1323)
.-|..... .+.... + .-.+.--.+-+|+.||- |+. ++|.+. +.|..+|++...-..+
T Consensus 566 ~pd~~~~~~~~l~~~~----i--------PRSIl~~~~e~d~~yLl-val------gdG~l~~fv~d~~tg~lsd~Kk~~ 626 (1096)
T KOG1897|consen 566 LPDLILITHEQLSGEI----I--------PRSILLTTFEGDIHYLL-VAL------GDGALLYFVLDINTGQLSDRKKVT 626 (1096)
T ss_pred CCCcceeeeeccCCCc----c--------chheeeEEeeccceEEE-EEc------CCceEEEEEEEcccceEccccccc
Confidence 33322111 111100 0 12345567778888888 764 345544 4566677665432211
Q ss_pred --CCceeEEEEccCCC-eEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccC--CCeeEEEEccCCC
Q 000736 222 --AFMGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCM--SDLLAAVVRFEEY 296 (1323)
Q Consensus 222 --~~~v~slawsPdG~-lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpD--g~~LA~~~~d~~~ 296 (1323)
..++.--.|+-.++ .+-++++. +.+ +|--||..+-. .+..+.-..+ ..||.| ..-||++..+.
T Consensus 627 lGt~P~~Lr~f~sk~~t~vfa~sdr------P~v-iY~~n~kLv~s-pls~kev~~~--c~f~s~a~~d~l~~~~~~~-- 694 (1096)
T KOG1897|consen 627 LGTQPISLRTFSSKSRTAVFALSDR------PTV-IYSSNGKLVYS-PLSLKEVNHM--CPFNSDAYPDSLASANGGA-- 694 (1096)
T ss_pred cCCCCcEEEEEeeCCceEEEEeCCC------CEE-EEecCCcEEEe-ccchHHhhhh--cccccccCCceEEEecCCc--
Confidence 12233335555443 44445543 344 45556544321 1111111112 224443 34577766554
Q ss_pred CeEEEEEeeCCeeEEEeEEEEecCCc-EEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecC
Q 000736 297 DSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLS 375 (1323)
Q Consensus 297 ~~V~LW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~ 375 (1323)
+++-+++.-.-...+++.. ... ..+++++. .+++.+.+.-+... .-.. -.......+.|.|.++..+..+.
T Consensus 695 --l~i~tid~iqkl~irtvpl--~~~prrI~~q~~-sl~~~v~s~r~e~~--~~~~-~ee~~~s~l~vlD~nTf~vl~~h 766 (1096)
T KOG1897|consen 695 --LTIGTIDEIQKLHIRTVPL--GESPRRICYQES-SLTFGVLSNRIESS--AEYY-GEEYEVSFLRVLDQNTFEVLSSH 766 (1096)
T ss_pred --eEEEEecchhhcceeeecC--CCChhheEeccc-ceEEEEEecccccc--hhhc-CCcceEEEEEEecCCceeEEeec
Confidence 8888877532222233222 222 56677763 33444444221111 1000 00122345778888886655432
Q ss_pred CcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEEC----------CCcEEEEECCCCCccccccCCceeEeeecccc
Q 000736 376 LSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILS----------DGCLCVVDLPAPDMLEDLEGTEFVVEACISET 445 (1323)
Q Consensus 376 ~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~----------Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~ 445 (1323)
.- .+.. .-..|.++.|..|. +..+++|+. .|.|.++.......+ .+.... .
T Consensus 767 ef-~~~E-------~~~Si~s~~~~~d~-~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L--------~~v~e~--~ 827 (1096)
T KOG1897|consen 767 EF-ERNE-------TALSIISCKFTDDP-NTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL--------ELVAET--V 827 (1096)
T ss_pred cc-cccc-------eeeeeeeeeecCCC-ceEEEEEEEeeccCCCCcccceEEEEEEecCCce--------eeeeee--e
Confidence 11 1111 12246677798885 277888753 355555555431111 111100 0
Q ss_pred ccCcEEEEEEecCCeEEEEEecCCCCeeEEEEee
Q 000736 446 AFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGAT 479 (1323)
Q Consensus 446 ~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~ 479 (1323)
-.+.+..+.-. +|++||.- ++++.++...
T Consensus 828 v~Gav~aL~~f-ngkllA~I----n~~vrLye~t 856 (1096)
T KOG1897|consen 828 VKGAVYALVEF-NGKLLAGI----NQSVRLYEWT 856 (1096)
T ss_pred eccceeehhhh-CCeEEEec----CcEEEEEEcc
Confidence 01234444333 56777632 2688888774
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.12 Score=65.25 Aligned_cols=141 Identities=13% Similarity=0.074 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHhc-chHHHHhhc-----CCcHHHHHHHHHHHHHHhc---ccCHHHHHHHHHhcCCHHHHHHHHH----H
Q 000736 962 HADCLNLMKKYAQ-LFPLGLKLI-----TDPAKMEQVLEAWADHLSD---VKCFEDAATTYFCCSSLEKAMKAYR----A 1028 (1323)
Q Consensus 962 ~~~ale~~~~~~~-ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~---~~~~~eAa~~y~~ag~~~kAl~~y~----~ 1028 (1323)
.+..++++..+-+ .|+.+-++- .+.+.++.+++..|..-.. .++..+++++|...|+..-....|+ +
T Consensus 353 qe~Ll~~~~~~~~~~W~~~r~~gv~~W~~~~~~Lr~~~E~iAr~~~~~~~~~dp~~~al~YlAl~Kk~vL~~L~k~a~~~ 432 (631)
T PF12234_consen 353 QEELLSLVPPQIKLSWEEARELGVGFWLRSIESLRSQFEKIARNEFQKNDTKDPSDCALFYLALGKKKVLAGLWKMASWH 432 (631)
T ss_pred HHHHHHHhhhhccCCHHHHHhhCCEEeecCHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHhccHHHHHHHHHhhhcc
Confidence 5888888877623 699988764 6779999999999975544 4788899999999999766666676 3
Q ss_pred hCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHH-HhcCHHHHHHHHHhcCC
Q 000736 1029 SGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLI-DARDWEEALRVAFMHRR 1105 (1323)
Q Consensus 1029 ag~W~~al~lA~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~e~Av~~~i-~~~~w~eA~rla~~~~~ 1105 (1323)
.++=+.+--++. +.+++..+.-|.+=|=.|..+++|..||..|+- +|+++.||+.++ +.++..=|+-+|..+..
T Consensus 433 ~~~~k~~~Fl~n--dF~~~rwr~AAlKNAyaLlsk~Ry~~AAaFFLL-ag~l~dAv~V~~~~l~D~qLAi~i~Rl~e~ 507 (631)
T PF12234_consen 433 KEQQKMAKFLSN--DFTEPRWRTAALKNAYALLSKHRYEYAAAFFLL-AGSLKDAVNVCLRQLNDPQLAIAIARLYEG 507 (631)
T ss_pred cccHHHHHHHhh--cCCChHHHHHHHHhHHHHHhcccHHHHHHHHHh-cccHHHHHHHHHHHccChhHHHHHHHHHcC
Confidence 333333333333 446778888899999999999999999999999 999999999998 56999999999988763
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.12 Score=64.64 Aligned_cols=103 Identities=16% Similarity=0.172 Sum_probs=54.6
Q ss_pred CCcEEEEeCCC-----CeE-EEeceecCcEEEEEEcCCCCeEEEEeC-CccEEEEee-cCceeeeeeecccCCCceeccC
Q 000736 96 SGLLLLHSVDG-----NAT-EVVGRVEGGVRFISPSPDGDLLGVTTG-FGQILVMTH-DWDLLYENPLEELAEGFDVHEP 167 (1323)
Q Consensus 96 dG~I~lw~~~~-----~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~-d~tV~l~t~-~~d~~~e~~l~~~~~~~~Vs~t 167 (1323)
++.|.++|..+ ..+ ..+. +......+++||||+++.+++. +++|.+.+- ..+..-.-.+...+ .-+.+.
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~--~vvaev 371 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRD--AVVAEP 371 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccc--eEEEee
Confidence 35577777765 222 2211 2345778899999999988875 778877642 11110000011110 000000
Q ss_pred ccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCC
Q 000736 168 ELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS 211 (1323)
Q Consensus 168 qf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~ 211 (1323)
.-.-+-...+|.+||..+. +-.. |..|-.||.++
T Consensus 372 ---evGlGPLHTaFDg~G~ayt-slf~------dsqv~kwn~~~ 405 (635)
T PRK02888 372 ---ELGLGPLHTAFDGRGNAYT-TLFL------DSQIVKWNIEA 405 (635)
T ss_pred ---ccCCCcceEEECCCCCEEE-eEee------cceeEEEehHH
Confidence 0011225788999998655 3333 46788899844
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.24 E-value=2.3 Score=52.05 Aligned_cols=50 Identities=16% Similarity=0.072 Sum_probs=37.1
Q ss_pred cEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCc
Q 000736 98 LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWD 148 (1323)
Q Consensus 98 ~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d 148 (1323)
.|.+|+..|..+..+.--.+.|.++.|+.+ +.|++...||++.+.+-.++
T Consensus 62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~ 111 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGE 111 (410)
T ss_pred EEEEECCCCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCc
Confidence 499999999776533322378999999986 56667889999988754333
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.24 E-value=2.1 Score=51.80 Aligned_cols=243 Identities=11% Similarity=0.030 Sum_probs=140.3
Q ss_pred ceeEEeeecCCCEEEEEeCCCc-EEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCC-EEEEEeCCCcE
Q 000736 22 ILQFSALDIEQNRLFFASSANN-IYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKE-ALIVGTSSGLL 99 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~-i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~-~La~as~dG~I 99 (1323)
.+...++++++..+|.....+. +...+. ..+. +.. .... ++.....++.++++. ..+....++.|
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~--~~n~----~~~----~~~~---g~~~p~~i~v~~~~~~vyv~~~~~~~v 98 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDA--TSNT----VTQ----SLSV---GGVYPAGVAVNPAGNKVYVTTGDSNTV 98 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeeccc--ccce----eee----eccC---CCccccceeeCCCCCeEEEecCCCCeE
Confidence 5667889999999999876443 333332 1111 110 0001 114567889999998 44555556899
Q ss_pred EEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeC---CccEEEEeecCceeeeeeecccCCCceeccCccccCCCCe
Q 000736 100 LLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG---FGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1323)
Q Consensus 100 ~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~---d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i 176 (1323)
.+.|..+.++.-.......-..++|+|||+.+-++.. ++++.+.+..+..+... ... +.. .
T Consensus 99 ~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~-~~v-------------G~~-P- 162 (381)
T COG3391 99 SVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT-IPV-------------GNT-P- 162 (381)
T ss_pred EEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE-Eec-------------CCC-c-
Confidence 9999776544311111225678899999988777755 57776665444333322 111 111 1
Q ss_pred EEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeee------eccCCCceeEEEEccCCCeEEEEecCCCCCCCC
Q 000736 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS------SELKAFMGAVLEWMPSGANIAAVYDRKSENKCP 250 (1323)
Q Consensus 177 ~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t------~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~ 250 (1323)
..++++|||+++. +.. ..+++|-+.|. .+..... .....+ -..++|+|+|+.+-....... ..
T Consensus 163 ~~~a~~p~g~~vy-v~~-----~~~~~v~vi~~-~~~~v~~~~~~~~~~~~~~-P~~i~v~~~g~~~yV~~~~~~---~~ 231 (381)
T COG3391 163 TGVAVDPDGNKVY-VTN-----SDDNTVSVIDT-SGNSVVRGSVGSLVGVGTG-PAGIAVDPDGNRVYVANDGSG---SN 231 (381)
T ss_pred ceEEECCCCCeEE-EEe-----cCCCeEEEEeC-CCcceeccccccccccCCC-CceEEECCCCCEEEEEeccCC---Cc
Confidence 6899999999766 442 23588999997 4443331 111222 278999999997766654310 13
Q ss_pred eEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCC
Q 000736 251 SIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1323)
Q Consensus 251 ~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~ 307 (1323)
.|...+...........+.... ....++.+|+|+..-+.... .+.|.+-+..+.
T Consensus 232 ~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~--~~~V~vid~~~~ 285 (381)
T COG3391 232 NVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQ--GGTVSVIDGATD 285 (381)
T ss_pred eEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecC--CCeEEEEeCCCC
Confidence 4555553321111111111111 34568999999988777544 236777776654
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0046 Score=76.68 Aligned_cols=182 Identities=13% Similarity=0.146 Sum_probs=118.4
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCcc-EEEEeecCceeee-
Q 000736 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQ-ILVMTHDWDLLYE- 152 (1323)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~d~t-V~l~t~~~d~~~e- 152 (1323)
..-++++||.+.+.|++|+-.|.|+++|+.+|..+ .+..|...|+-+.-|-||.++.+.+.... + +..|+.-..
T Consensus 1102 ~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl---saLW~~~s~~ 1178 (1516)
T KOG1832|consen 1102 ALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL---SALWDASSTG 1178 (1516)
T ss_pred cceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCch---HHHhcccccc
Confidence 46799999999999999999999999999998765 56667899999999999998887765432 1 122443221
Q ss_pred eeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeee-eccCCC---ceeEE
Q 000736 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS-SELKAF---MGAVL 228 (1323)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t-~e~~~~---~v~sl 228 (1323)
...|+. +.-.++.|+.--++-| +|+ ......|||.+|+..+.+ +.+..+ .-+..
T Consensus 1179 ~~~Hsf---------------~ed~~vkFsn~~q~r~-~gt------~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a 1236 (1516)
T KOG1832|consen 1179 GPRHSF---------------DEDKAVKFSNSLQFRA-LGT------EADDALLYDVQTCSPLQTYLTDTVTSSYSNNLA 1236 (1516)
T ss_pred Cccccc---------------cccceeehhhhHHHHH-hcc------cccceEEEecccCcHHHHhcCcchhhhhhcccc
Confidence 111111 1224566776655544 553 235688999999877666 433222 23667
Q ss_pred EEccCCCeEEEEecCCCCCCCCeEEEEeCCCe-e-E--EEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEe
Q 000736 229 EWMPSGANIAAVYDRKSENKCPSIVFYERNGL-E-R--SSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1323)
Q Consensus 229 awsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl-~-~--~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~ 304 (1323)
.|||+-.+|.- +=++||..-. . | .+|+..+ .=.|.|.|..+.+-+ .|||+
T Consensus 1237 ~FsP~D~LIln-----------dGvLWDvR~~~aIh~FD~ft~~~-------~G~FHP~g~eVIINS--------EIwD~ 1290 (1516)
T KOG1832|consen 1237 HFSPCDTLILN-----------DGVLWDVRIPEAIHRFDQFTDYG-------GGGFHPSGNEVIINS--------EIWDM 1290 (1516)
T ss_pred ccCCCcceEee-----------CceeeeeccHHHHhhhhhheecc-------cccccCCCceEEeec--------hhhhh
Confidence 89999888852 2246774211 0 0 1122211 123889998887754 48999
Q ss_pred eCCe
Q 000736 305 SNNH 308 (1323)
Q Consensus 305 ~n~~ 308 (1323)
.++|
T Consensus 1291 RTF~ 1294 (1516)
T KOG1832|consen 1291 RTFK 1294 (1516)
T ss_pred HHHH
Confidence 8876
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.21 Score=61.86 Aligned_cols=57 Identities=14% Similarity=-0.020 Sum_probs=38.4
Q ss_pred CCChhhhHHHHHHhhc-cccccchhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000736 1217 PGSPGEEMALVDHLKG-MSLTVGAKQELKSLVVFLVMLGEVDTARKLQDTGETFQLSQMAAIKLAED 1282 (1323)
Q Consensus 1217 ~Gs~~Ee~~Lv~~l~~-~~~~~~~~~e~~~Ll~~L~~~~~~~~A~~lq~~~~~~~~~~~~~~~~~~~ 1282 (1323)
.+-.|+|-.=|. +. -.--..+-.....|....=..|.+|.|.+++..+.. +.+..-+
T Consensus 428 a~~l~~~~~~i~--~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~-------~~~~~~~ 485 (508)
T KOG1840|consen 428 AEQLFEEAKDIM--KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN-------AREQRLG 485 (508)
T ss_pred HHHHHHHHHHHH--HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH-------HHHHcCC
Confidence 344555554333 22 122334567788899999999999999999998887 6665543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.58 Score=60.75 Aligned_cols=134 Identities=14% Similarity=0.012 Sum_probs=85.3
Q ss_pred HHHHhcCHHHHHHHHHHcC---CCcH----HHHHHHHHHHhcchHH----HHhhc-----CCcHHHHHHHHHHHHHHhcc
Q 000736 940 IDLRLQRFENALKHIVSMG---DSYH----ADCLNLMKKYAQLFPL----GLKLI-----TDPAKMEQVLEAWADHLSDV 1003 (1323)
Q Consensus 940 Id~~L~rye~Al~~l~~~g---~~~~----~~ale~~~~~~~ly~~----AL~L~-----~d~~~~~~i~~~~A~~L~~~ 1003 (1323)
+...+|+|++|+..|.++- ++.. ..+. ++... +.|++ |+.+| .+|. ...++..+|..|...
T Consensus 221 ~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~-~l~~~-G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~ 297 (656)
T PRK15174 221 TLCAVGKYQEAIQTGESALARGLDGAALRRSLGL-AYYQS-GRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRT 297 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHc-CCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHC
Confidence 3345788888888777642 2111 1121 12333 44443 44444 2443 346778889999999
Q ss_pred cCHHHHHHHHHhcCCH--------HHHHHHHHHhCCHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000736 1004 KCFEDAATTYFCCSSL--------EKAMKAYRASGNWSGVLTVAGLLK-LGKDEVAKLAQELCEELQALGKPGEAAKIAL 1074 (1323)
Q Consensus 1004 ~~~~eAa~~y~~ag~~--------~kAl~~y~~ag~W~~al~lA~~l~-~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~ 1074 (1323)
+++++|...|.++-.. ..-..+|...|+|++|+....+.- ..|+.. .....++..|...|++.+|...|.
T Consensus 298 g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~-~~~~~~a~al~~~G~~deA~~~l~ 376 (656)
T PRK15174 298 GQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTS-KWNRYAAAALLQAGKTSEAESVFE 376 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccch-HHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999998876321 112367778899999987665531 223322 344446788889999999999998
Q ss_pred Hhc
Q 000736 1075 DYC 1077 (1323)
Q Consensus 1075 ~yl 1077 (1323)
+.+
T Consensus 377 ~al 379 (656)
T PRK15174 377 HYI 379 (656)
T ss_pred HHH
Confidence 843
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.11 Score=64.16 Aligned_cols=82 Identities=21% Similarity=0.211 Sum_probs=50.8
Q ss_pred hHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHhhcCCCHHHHH
Q 000736 976 FPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVA 1050 (1323)
Q Consensus 976 y~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~ag~W~~al~lA~~l~~~~~~~~ 1050 (1323)
+++|++++ ..+.++...+...|.-+..+++|++|..+|.+ |++.|. ..++.+.-.+.
T Consensus 306 ~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~------al~i~~------------~~~g~~~~~~a 367 (508)
T KOG1840|consen 306 CERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQK------ALKIYL------------DAPGEDNVNLA 367 (508)
T ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH------HHHHHH------------hhccccchHHH
Confidence 45555555 45667777777777778888888888777763 333332 11111111345
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH
Q 000736 1051 KLAQELCEELQALGKPGEAAKIALD 1075 (1323)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1323)
.+...||+.+..+|+|.||.++|.+
T Consensus 368 ~~~~nl~~l~~~~gk~~ea~~~~k~ 392 (508)
T KOG1840|consen 368 KIYANLAELYLKMGKYKEAEELYKK 392 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHH
Confidence 5666777777777777777777665
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.25 Score=57.63 Aligned_cols=148 Identities=14% Similarity=0.104 Sum_probs=84.9
Q ss_pred ecCcEEEEEEcCCCC-eEEEEeCCccEEEEeecCce-eeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEee
Q 000736 115 VEGGVRFISPSPDGD-LLGVTTGFGQILVMTHDWDL-LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLS 192 (1323)
Q Consensus 115 ~~~~I~~~awSPDG~-~LA~~s~d~tV~l~t~~~d~-~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvs 192 (1323)
+..-|..++|||..+ +|.+++-+++|++|+..-.. ..... .+ ..+++++|.-|...+...|
T Consensus 192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~----------------a~-~~~wSC~wDlde~h~IYaG 254 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI----------------AY-NQIWSCCWDLDERHVIYAG 254 (463)
T ss_pred cchhhhhhccCccccceeeeeccCceEEEEecccceeeehee----------------cc-CCceeeeeccCCcceeEEe
Confidence 356699999999998 78888999999998632111 11111 11 4679999999988777444
Q ss_pred ccccccCCCCEEEEEECCC--Cceee-eeccCCCceeEE------EEccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEE
Q 000736 193 EFCNSSKLHKRLKVWERDS--GTLQA-SSELKAFMGAVL------EWMPSGANIAAVYDRKSENKCPSIVFYERNGLERS 263 (1323)
Q Consensus 193 s~d~~~~~d~~IrVWd~~~--G~l~~-t~e~~~~~v~sl------awsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~ 263 (1323)
..+|.|-|||... |-+.. +.+-...++..| .-.|.|-+++.+.. ...|||.-+....
T Consensus 255 ------l~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--------~l~f~ei~~s~~~ 320 (463)
T KOG1645|consen 255 ------LQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--------VLQFYEIVFSAEC 320 (463)
T ss_pred ------ccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--------hhhhhhhhccccC
Confidence 3468999999743 21111 011111222222 34567777777665 3678885432111
Q ss_pred -EEEeccCCCCcEEEEEEccCCCeeEEEEcc
Q 000736 264 -SFDINEQIDSTVELLKWNCMSDLLAAVVRF 293 (1323)
Q Consensus 264 -~f~l~~~~~~~V~~laWSpDg~~LA~~~~d 293 (1323)
-.+++....+...+++..+-++.+......
T Consensus 321 ~p~vlele~pG~cismqy~~~snh~l~tyRs 351 (463)
T KOG1645|consen 321 LPCVLELEPPGICISMQYHGVSNHLLLTYRS 351 (463)
T ss_pred CCcccccCCCcceeeeeecCccceEEEEecC
Confidence 011222223456666666655655444443
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.029 Score=74.96 Aligned_cols=186 Identities=11% Similarity=0.067 Sum_probs=120.4
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeec-CceeeeeeecccCCCceecc
Q 000736 88 EALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHE 166 (1323)
Q Consensus 88 ~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~-~d~~~e~~l~~~~~~~~Vs~ 166 (1323)
+....+..+++..-|...+.-.-+. ++-.+|.++.=.|---.-.+|++||.|++|-.. .+.+ ..+++.
T Consensus 2181 ~~~~~~n~~~~~~tq~~~~~~~~~k-~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v--~~~rt~-------- 2249 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGASVMIK-HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQV--VCFRTA-------- 2249 (2439)
T ss_pred ccCCcccCCccccceecccceeEee-cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeE--EEeecc--------
Confidence 3344444455555555544333222 233568899889998999999999999887421 1222 122221
Q ss_pred CccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCC
Q 000736 167 PELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSE 246 (1323)
Q Consensus 167 tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~ 246 (1323)
+. ..+..+.|+-.|.-|+ ++ .+|+.+-+|.. .-+......-|+...+...|=- .++|++++...
T Consensus 2250 ----g~-s~vtr~~f~~qGnk~~-i~------d~dg~l~l~q~-~pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d- 2313 (2439)
T KOG1064|consen 2250 ----GN-SRVTRSRFNHQGNKFG-IV------DGDGDLSLWQA-SPKPYTSWQCHNKALSDFRFIG--SLLATAGRSSD- 2313 (2439)
T ss_pred ----Cc-chhhhhhhcccCCcee-ee------ccCCceeeccc-CCcceeccccCCccccceeeee--hhhhccccCCC-
Confidence 11 4678899999999888 65 46799999998 5444444444554445555543 67788776543
Q ss_pred CCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeC
Q 000736 247 NKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1323)
Q Consensus 247 ~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n 306 (1323)
...|.+||.+- .+...-++.-|.+.+..+++-|.-++|.+|+.+| -|+|||...
T Consensus 2314 --~~n~~lwDtl~-~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G---~v~l~D~rq 2367 (2439)
T KOG1064|consen 2314 --NRNVCLWDTLL-PPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKG---EVCLFDIRQ 2367 (2439)
T ss_pred --CCcccchhccc-CcccceeeeecCCCceEEEEcCcceEEEecCCcC---cEEEeehHH
Confidence 56799999531 1111112222456799999999999999999999 799999864
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=96.08 E-value=1.2 Score=54.13 Aligned_cols=249 Identities=16% Similarity=0.141 Sum_probs=121.9
Q ss_pred ceeEEeeecCCCEEEEEeCCC--cEEEEecccccc-cc-----c------------ceeeccc----cccccccCCC---
Q 000736 22 ILQFSALDIEQNRLFFASSAN--NIYSAQLSSFQN-ER-----A------------SIKTAIS----AEIEHIDLEP--- 74 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~--~i~~~~~~~~~~-~~-----~------------~~~~~l~----~~~~~~~~~~--- 74 (1323)
.+..+.+-.++.++.++..++ .|++|..|.+.+ .. + -.+..+. .+++ .+|.|
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~-~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLK-EGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-S-EEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccc-cccCchhh
Confidence 356677778888899887655 577888762221 00 0 0011111 1111 12444
Q ss_pred ----CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEE---Eece------ecCcEEEEEEc---CCC-----CeEEE
Q 000736 75 ----GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE---VVGR------VEGGVRFISPS---PDG-----DLLGV 133 (1323)
Q Consensus 75 ----~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e---~vg~------~~~~I~~~awS---PDG-----~~LA~ 133 (1323)
.+.|++++.| |--++|+|+++|.+.+.|+.+-.+- .+.. ....|+++.|+ .++ =.|..
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 5899999998 4559999999999999999986543 2221 23468899997 333 35778
Q ss_pred EeCCccEEEEeec------CceeeeeeecccCCCceeccCccccCCCCeEEEE-Eec----------------------C
Q 000736 134 TTGFGQILVMTHD------WDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS-WRG----------------------D 184 (1323)
Q Consensus 134 ~s~d~tV~l~t~~------~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~is-Wsp----------------------D 184 (1323)
|+..|++.++.-. |.....-.. . .+++.+..|. ++. .
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~---~-----------~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~ 226 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGAT---T-----------NHDSPILSIIPINADTGESALATISAMQGLSKGISIP 226 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE----------------SS----EEEEEETTT--B-B-BHHHHHGGGGT----
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeecc---c-----------cCCCceEEEEEEECCCCCcccCchhHhhccccCCCcC
Confidence 8888988776421 111100000 0 1112222222 211 1
Q ss_pred CcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEE-----ccCCCeEEEEecCCCCCCCCeEEEEeCCC
Q 000736 185 GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEW-----MPSGANIAAVYDRKSENKCPSIVFYERNG 259 (1323)
Q Consensus 185 G~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slaw-----sPdG~lIAs~s~d~~~~~~~~V~~~e~nG 259 (1323)
| +++.++ .+.+||+..-+++.........-....+++ ...|..|++-..+ ..|++|..=+
T Consensus 227 g-~vVvvS--------e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~------G~i~i~SLP~ 291 (395)
T PF08596_consen 227 G-YVVVVS--------ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNN------GSIRIYSLPS 291 (395)
T ss_dssp E-EEEEE---------SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETT------SEEEEEETTT
T ss_pred c-EEEEEc--------ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECC------CcEEEEECCC
Confidence 2 333132 378999988666665544322223345556 3456666666553 4688887555
Q ss_pred eeE-EEEEeccC-CCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee
Q 000736 260 LER-SSFDINEQ-IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1323)
Q Consensus 260 l~~-~~f~l~~~-~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~ 305 (1323)
++. .+..++.. +...+....++++|+++...+... +++|++-
T Consensus 292 Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gpsE----~~l~sv~ 335 (395)
T PF08596_consen 292 LKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPSE----IQLFSVW 335 (395)
T ss_dssp --EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSSE----EEEEEEE
T ss_pred chHhhcccCCCccccccccccEECCCCCEEEEeCccc----EEEEEEE
Confidence 543 23334311 112344567789999776665443 6666653
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.02 Score=69.70 Aligned_cols=68 Identities=22% Similarity=0.239 Sum_probs=56.5
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEeceecCcEE-EEEEcCCCCeEEEEeCCccEEEE
Q 000736 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVR-FISPSPDGDLLGVTTGFGQILVM 143 (1323)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~-~~awSPDG~~LA~~s~d~tV~l~ 143 (1323)
-.|.-+.|+|.-+.+|.++.+|.|.+...+-.++=.+..+.-.++ +.+|.|||++||+|=.||+|++-
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~ 89 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLH 89 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEE
Confidence 367889999999999999999999998887655544443334455 99999999999999999999874
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.075 Score=57.59 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHhc
Q 000736 991 QVLEAWADHLSDVKCFEDAATTYFCC 1016 (1323)
Q Consensus 991 ~i~~~~A~~L~~~~~~~eAa~~y~~a 1016 (1323)
.+...+|..+...+++++|...|.++
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~ 125 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQA 125 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 34555566666666666666666654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=95.98 E-value=1 Score=49.85 Aligned_cols=190 Identities=18% Similarity=0.162 Sum_probs=109.6
Q ss_pred CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEE
Q 000736 31 EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE 110 (1323)
Q Consensus 31 ~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e 110 (1323)
+++.||+++.++.|+.||. .+++..|+.. ++..+. .. -..++..+++++.+|.|..+|..++++.
T Consensus 35 ~~~~v~~~~~~~~l~~~d~--~tG~~~W~~~-~~~~~~-------~~-----~~~~~~~v~v~~~~~~l~~~d~~tG~~~ 99 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDA--KTGKVLWRFD-LPGPIS-------GA-----PVVDGGRVYVGTSDGSLYALDAKTGKVL 99 (238)
T ss_dssp ETTEEEEEETTSEEEEEET--TTSEEEEEEE-CSSCGG-------SG-----EEEETTEEEEEETTSEEEEEETTTSCEE
T ss_pred eCCEEEEEcCCCEEEEEEC--CCCCEEEEee-cccccc-------ce-----eeecccccccccceeeeEecccCCccee
Confidence 6788999989999999999 7888777765 122211 11 1345566777778888888997776553
Q ss_pred -E--ecee--cCcEEEEEEcCCCCeEEEEeCCccEEEEe-ecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecC
Q 000736 111 -V--VGRV--EGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD 184 (1323)
Q Consensus 111 -~--vg~~--~~~I~~~awSPDG~~LA~~s~d~tV~l~t-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspD 184 (1323)
. .... .......+...+|+.+++++.++.|..++ ++++.+.............+. ...+....+.+. +
T Consensus 100 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~ 173 (238)
T PF13360_consen 100 WSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPIS-----SFSDINGSPVIS-D 173 (238)
T ss_dssp EEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EE-----EETTEEEEEECC-T
T ss_pred eeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCccee-----eecccccceEEE-C
Confidence 1 1110 11233444555688899998888998887 567766665552211101000 000111233333 5
Q ss_pred CcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000736 185 GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1323)
Q Consensus 185 G~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~n 258 (1323)
|..++ ++ . ..+.+.+ |..+|+...... ..+ ... ...++|..|..++.+ ..|..||+.
T Consensus 174 ~~v~~-~~-~-----~g~~~~~-d~~tg~~~w~~~-~~~-~~~-~~~~~~~~l~~~~~~------~~l~~~d~~ 230 (238)
T PF13360_consen 174 GRVYV-SS-G-----DGRVVAV-DLATGEKLWSKP-ISG-IYS-LPSVDGGTLYVTSSD------GRLYALDLK 230 (238)
T ss_dssp TEEEE-EC-C-----TSSEEEE-ETTTTEEEEEEC-SS--ECE-CEECCCTEEEEEETT------TEEEEEETT
T ss_pred CEEEE-Ec-C-----CCeEEEE-ECCCCCEEEEec-CCC-ccC-CceeeCCEEEEEeCC------CEEEEEECC
Confidence 55555 32 1 1236777 988898665322 222 222 145788888887753 578888853
|
... |
| >PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.055 Score=62.64 Aligned_cols=120 Identities=14% Similarity=0.171 Sum_probs=79.0
Q ss_pred HHHHcCCCcHHHHHHHHHHHhcchHHHHhhc--CCcHHHHHHHHHHHHHHhcccCH------HHHHHHHHhcCCHHHHHH
Q 000736 953 HIVSMGDSYHADCLNLMKKYAQLFPLGLKLI--TDPAKMEQVLEAWADHLSDVKCF------EDAATTYFCCSSLEKAMK 1024 (1323)
Q Consensus 953 ~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~--~d~~~~~~i~~~~A~~L~~~~~~------~eAa~~y~~ag~~~kAl~ 1024 (1323)
.++-.|+ .++|+++..++ ++|..||=|. .+++.++++...|...-...++. --...+-.-+|+.+.+++
T Consensus 4 ~~Ll~G~--~~~Av~~al~~-~~wa~ALlLAs~~g~e~~~~v~~~y~~~~~~~~~~~~~~~~~L~~l~~v~~g~~~~~v~ 80 (284)
T PF12931_consen 4 QLLLVGN--REEAVELALDN-GLWAHALLLASSLGPELWKKVVQEYFRREFSAGSPSSKITHLLRTLYQVFSGNSPEAVD 80 (284)
T ss_dssp HHHHTT---HHHHHHHHHHT-T-HHHHHHHHHTS-HHHHHHHHHHHHH--------THHHHHHHHHHHHHTTT-HHHHHH
T ss_pred HHHhCCC--HHHHHHHHHHC-CChHHHHHHHHhcCHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHcCCcHHHHH
Confidence 3445677 89999999999 9999999998 89999999999998887543332 123344466899999988
Q ss_pred HHHHh------------CCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC
Q 000736 1025 AYRAS------------GNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG 1078 (1323)
Q Consensus 1025 ~y~~a------------g~W~~al~lA~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~ 1078 (1323)
.+... ++|++.+.+.-... .+++ ...+..|++.|.+.|+..+|--||+= +|
T Consensus 81 ~l~~~~~~~~~~~~~~~~~Wre~lA~il~N~-~~~~-~~~l~~LGd~L~~~g~~~aA~iCYll-ag 143 (284)
T PF12931_consen 81 ELVPNSAAPPLEGEWDLDNWRETLAIILSNR-TPED-SQALCALGDRLWQRGRVEAAHICYLL-AG 143 (284)
T ss_dssp HHHH-----HHHHHHHHHSHHHHHHHHHHTS----S-S-TT--HHHHHHHTT-HHHHHHHHHH-TT
T ss_pred HhccccccccccccchhcCHHHHHHHHHhCC-Cccc-HHHHHHHHHHHHhCCCcchhHHHHhH-cC
Confidence 76643 47999987765532 3333 24566699999999998888888876 65
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.0044 Score=75.09 Aligned_cols=200 Identities=15% Similarity=0.152 Sum_probs=124.9
Q ss_pred CCEEEEEEecCC--CEEEEEeCCCcEEEEeCCC---CeEEEeceecCcEEEEEEcC-CCCeEEEEe----CCccEEEEee
Q 000736 76 DSITAFDYLMEK--EALIVGTSSGLLLLHSVDG---NATEVVGRVEGGVRFISPSP-DGDLLGVTT----GFGQILVMTH 145 (1323)
Q Consensus 76 ~~V~~v~~spdg--~~La~as~dG~I~lw~~~~---~~~e~vg~~~~~I~~~awSP-DG~~LA~~s----~d~tV~l~t~ 145 (1323)
..+.+++++-+. ..|++|.++|.|.+-+... ...|.+..+...-++.||+| |-+.||.|- .|-.+++|+.
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 456677776654 5899999999999987653 22455555667789999988 566777763 2445666642
Q ss_pred cCceeeeeeecccCCCceeccCcccc-CCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCc
Q 000736 146 DWDLLYENPLEELAEGFDVHEPELSS-SFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFM 224 (1323)
Q Consensus 146 ~~d~~~e~~l~~~~~~~~Vs~tqf~~-~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~ 224 (1323)
-+.... +. ...+|.+ .-++..+++|--|-+.+. .|. ..|.+.++|. .-.+.+..+-....
T Consensus 137 ----~s~ltv-Pk------e~~~fs~~~l~gqns~cwlrd~klvl-aGm------~sr~~~ifdl-Rqs~~~~~svnTk~ 197 (783)
T KOG1008|consen 137 ----NSLLTV-PK------ESPLFSSSTLDGQNSVCWLRDTKLVL-AGM------TSRSVHIFDL-RQSLDSVSSVNTKY 197 (783)
T ss_pred ----ccccCC-Cc------cccccccccccCccccccccCcchhh-ccc------ccchhhhhhh-hhhhhhhhhhhhhh
Confidence 221110 00 0112222 224556899998888776 443 2478999987 33444444434446
Q ss_pred eeEEEEcc-CCCeEEEEecCCCCCCCCeEEEEeC--CCeeEEEEEeccCCC----CcEEEEEEccCCC-eeEEEEccCCC
Q 000736 225 GAVLEWMP-SGANIAAVYDRKSENKCPSIVFYER--NGLERSSFDINEQID----STVELLKWNCMSD-LLAAVVRFEEY 296 (1323)
Q Consensus 225 v~slawsP-dG~lIAs~s~d~~~~~~~~V~~~e~--nGl~~~~f~l~~~~~----~~V~~laWSpDg~-~LA~~~~d~~~ 296 (1323)
+..+..+| .++++|+-.+ ..|.+||. |-. .-+..-.+.+ ..+..++|.|-.+ +||+...|.
T Consensus 198 vqG~tVdp~~~nY~cs~~d-------g~iAiwD~~rnie--npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS-- 266 (783)
T KOG1008|consen 198 VQGITVDPFSPNYFCSNSD-------GDIAIWDTYRNIE--NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDS-- 266 (783)
T ss_pred cccceecCCCCCceecccc-------Cceeeccchhhhc--cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCc--
Confidence 67888899 9999998875 46999982 210 0000001111 2489999999865 566666654
Q ss_pred CeEEEEEee
Q 000736 297 DSVKICFFS 305 (1323)
Q Consensus 297 ~~V~LW~~~ 305 (1323)
.+|++++..
T Consensus 267 ~tIrlydi~ 275 (783)
T KOG1008|consen 267 ITIRLYDIC 275 (783)
T ss_pred ceEEEeccc
Confidence 488888874
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.12 Score=63.09 Aligned_cols=126 Identities=13% Similarity=0.102 Sum_probs=77.3
Q ss_pred EEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeee-ccCCCceeEEEEccCCCeEEEEecCCCCC-----CCC
Q 000736 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-ELKAFMGAVLEWMPSGANIAAVYDRKSEN-----KCP 250 (1323)
Q Consensus 177 ~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~-e~~~~~v~slawsPdG~lIAs~s~d~~~~-----~~~ 250 (1323)
..+++||||+++| .+- +..|++..+++|+|.++|+.+... ....+ .+++|.+||+.+.....+.... ...
T Consensus 127 ~~~~~Spdg~~la-~~~-s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~--~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 127 GGFSVSPDGKRLA-YSL-SDGGSEWYTLRVFDLETGKFLPDGIENPKF--SSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEETTTSSEEE-EEE-EETTSSEEEEEEEETTTTEEEEEEEEEEES--EEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeECCCCCEEE-EEe-cCCCCceEEEEEEECCCCcCcCCccccccc--ceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 4678999999999 542 222234468999999999876542 21111 2399999999887776654311 145
Q ss_pred eEEEEeCCCeeEE-EEEeccCCCCc-EEEEEEccCCCeeEEEEccCCC-CeEEEEEeeC
Q 000736 251 SIVFYERNGLERS-SFDINEQIDST-VELLKWNCMSDLLAAVVRFEEY-DSVKICFFSN 306 (1323)
Q Consensus 251 ~V~~~e~nGl~~~-~f~l~~~~~~~-V~~laWSpDg~~LA~~~~d~~~-~~V~LW~~~n 306 (1323)
.|.+|.+...... ......+.... ...+.+|+||+.|.+.+..+.. +.|.+-+..+
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 6777776422211 22333333333 6789999999999887776633 3455555544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=95.83 E-value=5.7 Score=47.49 Aligned_cols=185 Identities=11% Similarity=0.070 Sum_probs=86.1
Q ss_pred EEEcCCCCeEEEEeC-CccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCC
Q 000736 122 ISPSPDGDLLGVTTG-FGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKL 200 (1323)
Q Consensus 122 ~awSPDG~~LA~~s~-d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~ 200 (1323)
=+|.+||+.|+.++. ||.-.++.-+-+.-.-.++...+ . +......++|+++.+..+-.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~------------g-~~~~g~~~s~~~~~~~Yv~~------- 100 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGP------------G-DNTFGGFLSPDDRALYYVKN------- 100 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS--------------B-TTT-EE-TTSSEEEEEET-------
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCC------------C-CCccceEEecCCCeEEEEEC-------
Confidence 479999998888875 44333332221111112222111 0 11124667888887654431
Q ss_pred CCEEEEEECCCCceeeeeccCCCceeEEEEc--cCCCeEEEEecCCC----------------CCCCCeEEEEe-CCCee
Q 000736 201 HKRLKVWERDSGTLQASSELKAFMGAVLEWM--PSGANIAAVYDRKS----------------ENKCPSIVFYE-RNGLE 261 (1323)
Q Consensus 201 d~~IrVWd~~~G~l~~t~e~~~~~v~slaws--PdG~lIAs~s~d~~----------------~~~~~~V~~~e-~nGl~ 261 (1323)
.+.++--|.++++.....+-.++++....|. .|+.+++....... ......|.--+ .+|..
T Consensus 101 ~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~ 180 (386)
T PF14583_consen 101 GRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER 180 (386)
T ss_dssp TTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E
T ss_pred CCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce
Confidence 2677777888888777777778888778885 45777765532110 00001111112 22322
Q ss_pred EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeE--EEEEeeC---CeeEEEeEEEEecCCc-EEEEEccCCCc
Q 000736 262 RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSV--KICFFSN---NHWYLKYEIRYLRRDG-IRFMWHPTKPL 333 (1323)
Q Consensus 262 ~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V--~LW~~~n---~~wylkq~l~~~~~~~-~~v~Wsp~~~~ 333 (1323)
.-.| ....++..+.|||.-.-|.+-|..++.+.| +||.++. ..|-+++. ...+. ..=-|.|+|..
T Consensus 181 ~~v~----~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~---~~~e~~gHEfw~~DG~~ 251 (386)
T PF14583_consen 181 KVVF----EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR---MEGESVGHEFWVPDGST 251 (386)
T ss_dssp EEEE----EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS------TTEEEEEEEE-TTSS-
T ss_pred eEEE----ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC---CCCcccccccccCCCCE
Confidence 2111 124578899999988888888888777754 8898862 12222111 11122 33468898865
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.82 E-value=3.3 Score=51.14 Aligned_cols=111 Identities=18% Similarity=0.167 Sum_probs=70.0
Q ss_pred ceeEEeeecC----CCEEEEEeCCCcEEEEeccc-ccccccceeecccccc-ccccCCCCCCEEEEEEecCCCEEEEEeC
Q 000736 22 ILQFSALDIE----QNRLFFASSANNIYSAQLSS-FQNERASIKTAISAEI-EHIDLEPGDSITAFDYLMEKEALIVGTS 95 (1323)
Q Consensus 22 ~~~~~~~d~~----~~~l~~~s~~~~i~~~~~~~-~~~~~~~~~~~l~~~~-~~~~~~~~~~V~~v~~spdg~~La~as~ 95 (1323)
.+.+++|-+. .-.|..+.-...+..|++-. .+....|-.++ --++ ..+|.+|.|.| |+|....|++-+.
T Consensus 58 hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQ-tcEi~e~~pvLpQGCV----WHPk~~iL~VLT~ 132 (671)
T PF15390_consen 58 HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQ-TCEIREPFPVLPQGCV----WHPKKAILTVLTA 132 (671)
T ss_pred eeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeee-eeeccCCcccCCCccc----ccCCCceEEEEec
Confidence 5777888765 44667676666688999841 11111122221 1112 23667776655 9999999998876
Q ss_pred CCcEEEEeCC--CCeEEEeceecCcEEEEEEcCCCCeEEEEeCC
Q 000736 96 SGLLLLHSVD--GNATEVVGRVEGGVRFISPSPDGDLLGVTTGF 137 (1323)
Q Consensus 96 dG~I~lw~~~--~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d 137 (1323)
...=.+.++. +.++..--...|-|.|++|.+||+.|++|-+.
T Consensus 133 ~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGS 176 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGS 176 (671)
T ss_pred CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCC
Confidence 6554566653 34443111225779999999999999998765
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.31 Score=55.27 Aligned_cols=141 Identities=16% Similarity=0.193 Sum_probs=83.8
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEeCCCC-eE---EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEE-eecCceeee
Q 000736 78 ITAFDYLMEKEALIVGTSSGLLLLHSVDGN-AT---EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVM-THDWDLLYE 152 (1323)
Q Consensus 78 V~~v~~spdg~~La~as~dG~I~lw~~~~~-~~---e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~-t~~~d~~~e 152 (1323)
+...+|.+-++....- -...+.+|..+=. .+ ++.|. ...|.++.||||.++|.+++....-.++ +..++.+..
T Consensus 45 ~f~~a~~k~~~~~~~~-~~r~~~~~l~~y~~~i~akpi~g~-~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirt 122 (316)
T COG3204 45 VFPCAWFKAGQTNGLD-LSRYIARYLLEYRARIDAKPILGE-TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRT 122 (316)
T ss_pred eeeeEEEecccccccc-ccchhhhccCCceEEEeccccccc-cccccceeeCCCcceEEEecCCCceEEEEecCCceEEE
Confidence 4556666666533221 1122445544321 12 23443 5669999999999999999887765554 788999998
Q ss_pred eeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCC-ceeee------ecc--C-C
Q 000736 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG-TLQAS------SEL--K-A 222 (1323)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G-~l~~t------~e~--~-~ 222 (1323)
+++.... .--.|.|-++|+|.+ +. ..++++.++..+.+ ..... ++. + +
T Consensus 123 iPL~g~~---------------DpE~Ieyig~n~fvi-~d------ER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N 180 (316)
T COG3204 123 IPLTGFS---------------DPETIEYIGGNQFVI-VD------ERDRALYLFTVDADTTVISAKVQKIPLGTTNKKN 180 (316)
T ss_pred ecccccC---------------ChhHeEEecCCEEEE-Ee------hhcceEEEEEEcCCccEEeccceEEeccccCCCC
Confidence 8876532 125689999999876 42 23566666655322 11111 111 1 2
Q ss_pred CceeEEEEccCCCeEEEEec
Q 000736 223 FMGAVLEWMPSGANIAAVYD 242 (1323)
Q Consensus 223 ~~v~slawsPdG~lIAs~s~ 242 (1323)
..-..+||.|....+-.+-.
T Consensus 181 ~GfEGlA~d~~~~~l~~aKE 200 (316)
T COG3204 181 KGFEGLAWDPVDHRLFVAKE 200 (316)
T ss_pred cCceeeecCCCCceEEEEEc
Confidence 22367888887776655544
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.55 Score=60.18 Aligned_cols=156 Identities=15% Similarity=0.193 Sum_probs=115.7
Q ss_pred HHHhcCHHHHHHHHHHcCC-CcHHHHHHHHHHHhcchHHHHhhc-------CCc----H---------HHHH--------
Q 000736 941 DLRLQRFENALKHIVSMGD-SYHADCLNLMKKYAQLFPLGLKLI-------TDP----A---------KMEQ-------- 991 (1323)
Q Consensus 941 d~~L~rye~Al~~l~~~g~-~~~~~ale~~~~~~~ly~~AL~L~-------~d~----~---------~~~~-------- 991 (1323)
...-++-.+|++.|+++.+ ..+.+.++...+. +-|++-.+.. ..| + ++.+
T Consensus 1114 QL~~~~v~dAieSyikadDps~y~eVi~~a~~~-~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gp 1192 (1666)
T KOG0985|consen 1114 QLQGGLVKDAIESYIKADDPSNYLEVIDVASRT-GKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGP 1192 (1666)
T ss_pred HHhcCchHHHHHHHHhcCCcHHHHHHHHHHHhc-CcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCC
Confidence 3346788999999999864 3577888888888 8888766643 111 1 1111
Q ss_pred ---HHHHHHHHHhcccCHHHHHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHH
Q 000736 992 ---VLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGE 1068 (1323)
Q Consensus 992 ---i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~ag~W~~al~lA~~l~~~~~~~~~l~~~la~~L~~~~~~~e 1068 (1323)
=....||-+.+.+.|+.|-++|..-.|+.+-.......|.++.|...|++-+ +..-++ +.+-.+...+.|.-
T Consensus 1193 N~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAn-s~ktWK----~VcfaCvd~~EFrl 1267 (1666)
T KOG0985|consen 1193 NVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKAN-STKTWK----EVCFACVDKEEFRL 1267 (1666)
T ss_pred CchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhcc-chhHHH----HHHHHHhchhhhhH
Confidence 1245689999999999999999999999999999999999999999999876 333334 44555556666776
Q ss_pred HHHHHHH---hcCCHHHHHHHHHHhcCHHHHHHHHHh
Q 000736 1069 AAKIALD---YCGDVTNGISLLIDARDWEEALRVAFM 1102 (1323)
Q Consensus 1069 Aa~i~~~---yl~d~e~Av~~~i~~~~w~eA~rla~~ 1102 (1323)
|-.+=+. ++.+.++-+..|-.-+.|+|-+.|.+.
T Consensus 1268 AQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1268 AQICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 6544333 367899999999999999998876544
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.13 Score=65.48 Aligned_cols=117 Identities=14% Similarity=0.166 Sum_probs=79.7
Q ss_pred CcHHHHHHHHHHHHHHhcccCHHHHHHHHHhcCC--------HHHHHHHHHHhCCHHHHHHH----HhhcC-CCHHHHHH
Q 000736 985 DPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTV----AGLLK-LGKDEVAK 1051 (1323)
Q Consensus 985 d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~--------~~kAl~~y~~ag~W~~al~l----A~~l~-~~~~~~~~ 1051 (1323)
+|... +.|..+|+..++.+++++|..+|.+|=. .-+=...|.+.|+..+|+.- ....+ .+=+.+.+
T Consensus 203 ~p~d~-e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d 281 (895)
T KOG2076|consen 203 NPKDY-ELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIED 281 (895)
T ss_pred CCCCh-HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHH
Confidence 44444 6777777777777777777777776611 12223455555554444322 21211 11145567
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhcC---------CHHHHHHHHHHhcCHHHHHHHHHh
Q 000736 1052 LAQELCEELQALGKPGEAAKIALDYCG---------DVTNGISLLIDARDWEEALRVAFM 1102 (1323)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~yl~---------d~e~Av~~~i~~~~w~eA~rla~~ 1102 (1323)
++...+.++...++.+-|+++++.|+. |++-.+.+|++.++|+.|++....
T Consensus 282 ~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~ 341 (895)
T KOG2076|consen 282 LIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVD 341 (895)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHH
Confidence 888889999988888999999888754 788999999999999999987643
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=95.68 E-value=5.7 Score=46.39 Aligned_cols=215 Identities=15% Similarity=0.177 Sum_probs=99.0
Q ss_pred eeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000736 27 ALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDG 106 (1323)
Q Consensus 27 ~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~~~ 106 (1323)
+++..++..+++.+.+.|+.-. ..++ .|+...+++. +| +....|....++.. .+++..|.|.. ..++
T Consensus 66 ~I~f~~~~g~ivG~~g~ll~T~---DgG~-tW~~v~l~~~------lp-gs~~~i~~l~~~~~-~l~~~~G~iy~-T~Dg 132 (302)
T PF14870_consen 66 SISFDGNEGWIVGEPGLLLHTT---DGGK-TWERVPLSSK------LP-GSPFGITALGDGSA-ELAGDRGAIYR-TTDG 132 (302)
T ss_dssp EEEEETTEEEEEEETTEEEEES---STTS-S-EE----TT-------S-S-EEEEEEEETTEE-EEEETT--EEE-ESST
T ss_pred EEEecCCceEEEcCCceEEEec---CCCC-CcEEeecCCC------CC-CCeeEEEEcCCCcE-EEEcCCCcEEE-eCCC
Confidence 3444456778887777444322 2222 3554322222 12 34456666666644 44566777653 3344
Q ss_pred C-eEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEE-EEee---cCceeeeeeecccCCCceeccCccccCCCCeEEEE
Q 000736 107 N-ATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQIL-VMTH---DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1323)
Q Consensus 107 ~-~~e-~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~-l~t~---~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~is 180 (1323)
+ ..+ .+..-.+.+..+.-+|||+++|+++ .|.+. .|+. .|.+.... ....+.++.
T Consensus 133 G~tW~~~~~~~~gs~~~~~r~~dG~~vavs~-~G~~~~s~~~G~~~w~~~~r~------------------~~~riq~~g 193 (302)
T PF14870_consen 133 GKTWQAVVSETSGSINDITRSSDGRYVAVSS-RGNFYSSWDPGQTTWQPHNRN------------------SSRRIQSMG 193 (302)
T ss_dssp TSSEEEEE-S----EEEEEE-TTS-EEEEET-TSSEEEEE-TT-SS-EEEE--------------------SSS-EEEEE
T ss_pred CCCeeEcccCCcceeEeEEECCCCcEEEEEC-cccEEEEecCCCccceEEccC------------------ccceehhce
Confidence 3 444 3333357799999999999888764 45554 3321 13322111 123678999
Q ss_pred EecCCcEEEEeeccccccCCCCEEEEEE-CCCCceeee--ec-cCCCc-eeEEEEccCCCeEEEEecCCCCCCCCeEEEE
Q 000736 181 WRGDGKYFATLSEFCNSSKLHKRLKVWE-RDSGTLQAS--SE-LKAFM-GAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1323)
Q Consensus 181 WspDG~~lAtvss~d~~~~~d~~IrVWd-~~~G~l~~t--~e-~~~~~-v~slawsPdG~lIAs~s~d~~~~~~~~V~~~ 255 (1323)
|+|||.... ++. .+.|+.=+ ...++.-.. .. ...+. +-+++|+|++...|+++.. .+..-
T Consensus 194 f~~~~~lw~-~~~-------Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-------~l~~S 258 (302)
T PF14870_consen 194 FSPDGNLWM-LAR-------GGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-------TLLVS 258 (302)
T ss_dssp E-TTS-EEE-EET-------TTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT--------EEEE
T ss_pred ecCCCCEEE-EeC-------CcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc-------cEEEe
Confidence 999999866 431 25666554 212211111 11 12333 5889999999999988752 34333
Q ss_pred eCCCeeEEEEEec--cCCCCcEEEEEEccCCCeeEEE
Q 000736 256 ERNGLERSSFDIN--EQIDSTVELLKWNCMSDLLAAV 290 (1323)
Q Consensus 256 e~nGl~~~~f~l~--~~~~~~V~~laWSpDg~~LA~~ 290 (1323)
.-+|..=.. -+ .+-....+.|.|.++.+-+|.+
T Consensus 259 ~DgGktW~~--~~~~~~~~~n~~~i~f~~~~~gf~lG 293 (302)
T PF14870_consen 259 TDGGKTWQK--DRVGENVPSNLYRIVFVNPDKGFVLG 293 (302)
T ss_dssp SSTTSS-EE---GGGTTSSS---EEEEEETTEEEEE-
T ss_pred CCCCccceE--CccccCCCCceEEEEEcCCCceEEEC
Confidence 333432111 11 1113457888888776666665
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.26 Score=57.02 Aligned_cols=29 Identities=21% Similarity=0.198 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000736 1047 DEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1323)
Q Consensus 1047 ~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1323)
.........+|..+...|+|.+|..+|.+
T Consensus 152 ~~a~~~~~~~A~l~~~l~~y~~A~~~~e~ 180 (282)
T PF14938_consen 152 HSAAECLLKAADLYARLGRYEEAIEIYEE 180 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 33456777888888888889999888877
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.026 Score=64.90 Aligned_cols=167 Identities=19% Similarity=0.111 Sum_probs=49.7
Q ss_pred hccccHHHHhcCHHHHHHHHHHc-CC-------CcHHHHHHHHHHHhcchHHHHhhc----CCcHHHHHHHHHHHHHHhc
Q 000736 935 LMRYTIDLRLQRFENALKHIVSM-GD-------SYHADCLNLMKKYAQLFPLGLKLI----TDPAKMEQVLEAWADHLSD 1002 (1323)
Q Consensus 935 ~~~~~Id~~L~rye~Al~~l~~~-g~-------~~~~~ale~~~~~~~ly~~AL~L~----~d~~~~~~i~~~~A~~L~~ 1002 (1323)
++-+.+.--.|+|++|++.|.+. .. +.....-++.... +.|+.|++.| .-+.........++.+ ..
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~-~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSL-GDYDEAIEAYEKLLASDKANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccc-cc
Confidence 33445555567777777777421 11 1111222344556 6677777766 1222234445555555 57
Q ss_pred ccCHHHHHHHHHhc-------CCHHHHHHHHHHhCCHHHHHHHHhhcC-CC-HHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 000736 1003 VKCFEDAATTYFCC-------SSLEKAMKAYRASGNWSGVLTVAGLLK-LG-KDEVAKLAQELCEELQALGKPGEAAKIA 1073 (1323)
Q Consensus 1003 ~~~~~eAa~~y~~a-------g~~~kAl~~y~~ag~W~~al~lA~~l~-~~-~~~~~~l~~~la~~L~~~~~~~eAa~i~ 1073 (1323)
.+++++|..+++++ .-+..++.+|...++|+++..+...+. .. ...-..+...+|..+.+.|++.+|.++|
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77788887766654 234567778888888888766654421 01 0112357778888888999999999998
Q ss_pred HHhcC----CHH---HHHHHHHHhcCHHHHHHHHHhc
Q 000736 1074 LDYCG----DVT---NGISLLIDARDWEEALRVAFMH 1103 (1323)
Q Consensus 1074 ~~yl~----d~e---~Av~~~i~~~~w~eA~rla~~~ 1103 (1323)
.+.+. |.+ .-+-++++.++.++|..+....
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~ 206 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRL 206 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 77542 222 2355677888888866555443
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.35 Score=52.99 Aligned_cols=43 Identities=16% Similarity=0.089 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCH
Q 000736 1051 KLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDW 1093 (1323)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~yl~d~e~Av~~~i~~~~w 1093 (1323)
+++.+++..=...+.|.+=+++|+.=+.|++.||..|-.+..|
T Consensus 101 eIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~ 143 (288)
T KOG1586|consen 101 EIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEY 143 (288)
T ss_pred HHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 4666666555555666667778877688999999999988888
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.11 Score=63.38 Aligned_cols=152 Identities=18% Similarity=0.197 Sum_probs=104.7
Q ss_pred cHHHHhcCHHHHHHHHHHcCCCcH---------------HHHHHHHHHHhcchHHHHhhcCCcHHHHHHHHHHHHHHhcc
Q 000736 939 TIDLRLQRFENALKHIVSMGDSYH---------------ADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDV 1003 (1323)
Q Consensus 939 ~Id~~L~rye~Al~~l~~~g~~~~---------------~~ale~~~~~~~ly~~AL~L~~d~~~~~~i~~~~A~~L~~~ 1003 (1323)
.|..-+++|+.|+.-|.++=..+. .--++|..++ |++||++- | ...+.+...|.-|.+.
T Consensus 260 nV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~---Ykral~~~--P-~F~~Ay~NlanALkd~ 333 (966)
T KOG4626|consen 260 NVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDT---YKRALELQ--P-NFPDAYNNLANALKDK 333 (966)
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHH---HHHHHhcC--C-CchHHHhHHHHHHHhc
Confidence 455567778888888877522211 2225666677 88887764 1 2455667778889999
Q ss_pred cCHHHHHHHHHhcC----CHHHHH----HHHHHhCCHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000736 1004 KCFEDAATTYFCCS----SLEKAM----KAYRASGNWSGVLTVAGL-LKLGKDEVAKLAQELCEELQALGKPGEAAKIAL 1074 (1323)
Q Consensus 1004 ~~~~eAa~~y~~ag----~~~kAl----~~y~~ag~W~~al~lA~~-l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~ 1074 (1323)
|+..||..+|.+|- ++..|+ .+|.+.|..++|..+=.. +... .+...-...||..++++|++.+|..+|.
T Consensus 334 G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Yk 412 (966)
T KOG4626|consen 334 GSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYK 412 (966)
T ss_pred cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHH
Confidence 99999999998763 445554 567777887777544322 1112 2345566778889999999999988876
Q ss_pred Hh--------------------cCCHHHHHHHHHHhcCHHHHH
Q 000736 1075 DY--------------------CGDVTNGISLLIDARDWEEAL 1097 (1323)
Q Consensus 1075 ~y--------------------l~d~e~Av~~~i~~~~w~eA~ 1097 (1323)
+- .||+..|++||-++=+..-++
T Consensus 413 ealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~ 455 (966)
T KOG4626|consen 413 EALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTF 455 (966)
T ss_pred HHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHH
Confidence 52 489999999999887765444
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.33 Score=61.34 Aligned_cols=106 Identities=20% Similarity=0.124 Sum_probs=76.1
Q ss_pred CcHHHHHHHHHHHHHHhcccCHHHHHHHHHhcCCHHHHHHHHH-HhCCHHHHHHHHhhcCCCH-HHHHHHHHH-HHHHHH
Q 000736 985 DPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYR-ASGNWSGVLTVAGLLKLGK-DEVAKLAQE-LCEELQ 1061 (1323)
Q Consensus 985 d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~-~ag~W~~al~lA~~l~~~~-~~~~~l~~~-la~~L~ 1061 (1323)
..++-+....+=|=-|..+++|+.||..|..||..+.|++... ..+|.+-|+.+|+.+.-+. ..+++++++ +-..-.
T Consensus 447 ~~~rwr~AAlKNAyaLlsk~Ry~~AAaFFLLag~l~dAv~V~~~~l~D~qLAi~i~Rl~e~d~gp~~~~ll~~~vLp~a~ 526 (631)
T PF12234_consen 447 TEPRWRTAALKNAYALLSKHRYEYAAAFFLLAGSLKDAVNVCLRQLNDPQLAIAIARLYEGDNGPVLKKLLEEHVLPEAI 526 (631)
T ss_pred CChHHHHHHHHhHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHHccChhHHHHHHHHHcCCCchHHHHHHHHhhhcccc
Confidence 5566677777777889999999999999999999999998665 6689999999998875321 122333322 111112
Q ss_pred HcCChHHHHHHHHHhcCCHHHHHHHHHHhc
Q 000736 1062 ALGKPGEAAKIALDYCGDVTNGISLLIDAR 1091 (1323)
Q Consensus 1062 ~~~~~~eAa~i~~~yl~d~e~Av~~~i~~~ 1091 (1323)
+.|+.=-+.-+|-. +++++.|++.++..-
T Consensus 527 ~~~d~wl~s~~~W~-L~~~~~ai~~Li~~~ 555 (631)
T PF12234_consen 527 KEGDRWLASWAFWM-LGDYDEAIRALISPP 555 (631)
T ss_pred ccCCHHHHHHHHHh-cCCHHHHHHHHhcCc
Confidence 45666666777777 888888888887654
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.11 Score=60.97 Aligned_cols=191 Identities=14% Similarity=0.160 Sum_probs=128.8
Q ss_pred CCCEEEEEeCCCcEEEEeCCC-CeEEEec---eecCcEEEEEEcCCCCeEEEEeC-CccEEEEe-ecCceeeeeeecccC
Q 000736 86 EKEALIVGTSSGLLLLHSVDG-NATEVVG---RVEGGVRFISPSPDGDLLGVTTG-FGQILVMT-HDWDLLYENPLEELA 159 (1323)
Q Consensus 86 dg~~La~as~dG~I~lw~~~~-~~~e~vg---~~~~~I~~~awSPDG~~LA~~s~-d~tV~l~t-~~~d~~~e~~l~~~~ 159 (1323)
-.+++.+||-||.++.|.... .-++.+- .|-+-|.+++-|-||-++.++.. |..+++.+ -++|.++.+.+...+
T Consensus 19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP 98 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP 98 (558)
T ss_pred hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCC
Confidence 357888999999999998765 3344333 35567889999999999999877 99998875 567777666655443
Q ss_pred CCceeccCccccCCCCeEEEEEe---cCCc-EEEEeeccccccCCCCEEEEEECCCC--ceeeeeccCCCceeEEEEccC
Q 000736 160 EGFDVHEPELSSSFSFKSPISWR---GDGK-YFATLSEFCNSSKLHKRLKVWERDSG--TLQASSELKAFMGAVLEWMPS 233 (1323)
Q Consensus 160 ~~~~Vs~tqf~~~~~~i~~isWs---pDG~-~lAtvss~d~~~~~d~~IrVWd~~~G--~l~~t~e~~~~~v~slawsPd 233 (1323)
-.+.|- +|-. .+| ++..+ .+.+.|+|...+ +....-.-|..+|..+-++|.
T Consensus 99 -----------------g~a~wv~skGd~~s~IA-Vs~~~-----sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa 155 (558)
T KOG0882|consen 99 -----------------GFAEWVTSKGDKISLIA-VSLFK-----SGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQA 155 (558)
T ss_pred -----------------CceEEecCCCCeeeeEE-eeccc-----CCCcEEECCcCCcCccceecccccCceEEEEeecc
Confidence 122231 2222 455 66543 478999987322 223333457788999999999
Q ss_pred CCeEEEEecCCCCCCCCeEEEEeCCCe---eEE--EEEec-------cC-CCCcEEEEEEccCCCeeEEEEccCCCCeEE
Q 000736 234 GANIAAVYDRKSENKCPSIVFYERNGL---ERS--SFDIN-------EQ-IDSTVELLKWNCMSDLLAAVVRFEEYDSVK 300 (1323)
Q Consensus 234 G~lIAs~s~d~~~~~~~~V~~~e~nGl---~~~--~f~l~-------~~-~~~~V~~laWSpDg~~LA~~~~d~~~~~V~ 300 (1323)
|..+.|... .+.|.-|...|. ... .|.++ .+ .-....++.|||+|..++.-..|. .|+
T Consensus 156 ~Ds~vSiD~------~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Dr---kVR 226 (558)
T KOG0882|consen 156 GDSAVSIDI------SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDR---KVR 226 (558)
T ss_pred ccceeeccc------cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCccc---EEE
Confidence 998776543 357888876541 000 01111 00 113466899999999999999988 899
Q ss_pred EEEeeCCe
Q 000736 301 ICFFSNNH 308 (1323)
Q Consensus 301 LW~~~n~~ 308 (1323)
++...+..
T Consensus 227 ~F~~KtGk 234 (558)
T KOG0882|consen 227 GFVFKTGK 234 (558)
T ss_pred EEEeccch
Confidence 99887654
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=95.32 E-value=1.1 Score=51.48 Aligned_cols=235 Identities=15% Similarity=0.066 Sum_probs=128.5
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEeC-CCCeE-E-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe--ecCcee
Q 000736 76 DSITAFDYLMEKEALIVGTSSGLLLLHSV-DGNAT-E-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT--HDWDLL 150 (1323)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~~-~~~~~-e-~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t--~~~d~~ 150 (1323)
+.|.+....|--+.+.+++.|.++++|-. +.++. . +.-....++++++++++-..|..+-..|++.-.. .+|+..
T Consensus 25 d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm 104 (404)
T KOG1409|consen 25 DDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKM 104 (404)
T ss_pred hhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhc
Confidence 45667667787888999999999999954 44442 2 3333467899999999999999999999885443 233322
Q ss_pred eeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEEC-CCCceeeeeccCCCceeEEE
Q 000736 151 YENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWER-DSGTLQASSELKAFMGAVLE 229 (1323)
Q Consensus 151 ~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~-~~G~l~~t~e~~~~~v~sla 229 (1323)
+.... ...|...+..+-|+---..+. +.+.| ..+ .|-- +.|.-+ |.-.-.+
T Consensus 105 ~~~r~-------------~~~h~~~v~~~if~~~~e~V~-s~~~d------k~~-~~hc~e~~~~l-------g~Y~~~~ 156 (404)
T KOG1409|consen 105 TFLKD-------------YLAHQARVSAIVFSLTHEWVL-STGKD------KQF-AWHCTESGNRL-------GGYNFET 156 (404)
T ss_pred chhhh-------------hhhhhcceeeEEecCCceeEE-Eeccc------cce-EEEeeccCCcc-------cceEeec
Confidence 21111 113445667777777676666 44332 222 3432 111110 0001112
Q ss_pred EccCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCee
Q 000736 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1323)
Q Consensus 230 wsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~w 309 (1323)
+--+-..++....++......++.=++.+++. .+.-..++.+.+..++|-|--.+|-++..|. .|-.|++....-
T Consensus 157 ~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~--~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~---~vi~wdigg~~g 231 (404)
T KOG1409|consen 157 PASALQFDALYAFVGDHSGQITMLKLEQNGCQ--LITTFNGHTGEVTCLKWDPGQRLLFSGASDH---SVIMWDIGGRKG 231 (404)
T ss_pred cCCCCceeeEEEEecccccceEEEEEeecCCc--eEEEEcCcccceEEEEEcCCCcEEEeccccC---ceEEEeccCCcc
Confidence 22222222222221110011222223344432 1111123467899999999999999999998 899999975331
Q ss_pred EEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEE
Q 000736 310 YLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQIT 345 (1323)
Q Consensus 310 ylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~ 345 (1323)
...++.++.+. +...|.-+..++|.....||.+.
T Consensus 232 -~~~el~gh~~k-V~~l~~~~~t~~l~S~~edg~i~ 265 (404)
T KOG1409|consen 232 -TAYELQGHNDK-VQALSYAQHTRQLISCGEDGGIV 265 (404)
T ss_pred -eeeeeccchhh-hhhhhhhhhheeeeeccCCCeEE
Confidence 22344444322 22233333444444444455443
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.28 E-value=2.6 Score=49.40 Aligned_cols=233 Identities=11% Similarity=0.058 Sum_probs=116.5
Q ss_pred eeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 000736 23 LQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1323)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1323)
-.+..||+++..||.+.- .+.|..|++ .+++. ++- . . .+.+.++...-++..|++ +..| +.+
T Consensus 27 gEgP~w~~~~~~L~w~DI~~~~i~r~~~--~~g~~--~~~------~----~-p~~~~~~~~~d~~g~Lv~-~~~g-~~~ 89 (307)
T COG3386 27 GEGPVWDPDRGALLWVDILGGRIHRLDP--ETGKK--RVF------P----S-PGGFSSGALIDAGGRLIA-CEHG-VRL 89 (307)
T ss_pred ccCccCcCCCCEEEEEeCCCCeEEEecC--CcCce--EEE------E----C-CCCcccceeecCCCeEEE-Eccc-cEE
Confidence 345689999999988855 567999999 44432 111 1 1 123444444334444443 3333 456
Q ss_pred EeCCCCeE-E-E----eceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeee--eeecccCCCceeccCccccCC
Q 000736 102 HSVDGNAT-E-V----VGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYE--NPLEELAEGFDVHEPELSSSF 173 (1323)
Q Consensus 102 w~~~~~~~-e-~----vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e--~~l~~~~~~~~Vs~tqf~~~~ 173 (1323)
++.+++.. . + -+.-...-+.+...|||.+-+....... .........+ ..+.+.. ..+. .+..+-
T Consensus 90 ~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~---~~~~~~~~~G~lyr~~p~g--~~~~--l~~~~~ 162 (307)
T COG3386 90 LDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFD---LGKSEERPTGSLYRVDPDG--GVVR--LLDDDL 162 (307)
T ss_pred EeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccc---cCccccCCcceEEEEcCCC--CEEE--eecCcE
Confidence 67654332 2 1 1222344567788889876665444100 0000111111 0011000 0000 000000
Q ss_pred CCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECC--CCceeee-----eccCCCceeEEEEccCCCeEEEEecCCCC
Q 000736 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD--SGTLQAS-----SELKAFMGAVLEWMPSGANIAAVYDRKSE 246 (1323)
Q Consensus 174 ~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~--~G~l~~t-----~e~~~~~v~slawsPdG~lIAs~s~d~~~ 246 (1323)
..-..|+|||||+.|- ++- +..+.|.-|+.. +|..... .....|.--.++---+|++-+++-..
T Consensus 163 ~~~NGla~SpDg~tly-~aD-----T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~--- 233 (307)
T COG3386 163 TIPNGLAFSPDGKTLY-VAD-----TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG--- 233 (307)
T ss_pred EecCceEECCCCCEEE-EEe-----CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC---
Confidence 1236799999998766 442 334666666552 2322111 11123333444555566666443332
Q ss_pred CCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEE-ccCCCeeEEEEcc
Q 000736 247 NKCPSIVFYERNGLERSSFDINEQIDSTVELLKW-NCMSDLLAAVVRF 293 (1323)
Q Consensus 247 ~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laW-SpDg~~LA~~~~d 293 (1323)
...|..|+++|...+++.++. ..+.+++| .|+.+.|-+.+..
T Consensus 234 --g~~v~~~~pdG~l~~~i~lP~---~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 234 --GGRVVRFNPDGKLLGEIKLPV---KRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred --CceEEEECCCCcEEEEEECCC---CCCccceEeCCCcCEEEEEecC
Confidence 247999999998888877762 24566777 4566666665543
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.16 Score=60.48 Aligned_cols=201 Identities=13% Similarity=0.135 Sum_probs=114.0
Q ss_pred eeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCC-CCCEEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000736 27 ALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEP-GDSITAFDYLMEKEALIVGTSSGLLLLHSVD 105 (1323)
Q Consensus 27 ~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~V~~v~~spdg~~La~as~dG~I~lw~~~ 105 (1323)
++|.+ +...++|.|+.+..|.+.. .+.. ...+ ...+.... ...|.++.|..|.+.++ |-||-|.+||.-
T Consensus 743 AidNE-NSFiSASkDKTVKLWSik~-EgD~-~~ts-----aCQfTY~aHkk~i~~igfL~~lr~i~--ScD~giHlWDPF 812 (1034)
T KOG4190|consen 743 AIDNE-NSFISASKDKTVKLWSIKP-EGDE-IGTS-----ACQFTYQAHKKPIHDIGFLADLRSIA--SCDGGIHLWDPF 812 (1034)
T ss_pred hcccc-cceeeccCCceEEEEEecc-ccCc-cccc-----eeeeEhhhccCcccceeeeeccceee--eccCcceeeccc
Confidence 45654 4567788899999999831 1111 1111 11111111 35789999999998865 568999999985
Q ss_pred CCe----EEEecee--cCcEEEEEEcCCCCeEEEE-eCCccEEEEe-ecCceeeeeeecccCCCceeccCccccCCCCeE
Q 000736 106 GNA----TEVVGRV--EGGVRFISPSPDGDLLGVT-TGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1323)
Q Consensus 106 ~~~----~e~vg~~--~~~I~~~awSPDG~~LA~~-s~d~tV~l~t-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~ 177 (1323)
-++ ++--..+ .+.|.|+ =|-|..+|..+ +...||++.+ |..+...|...-... +....+.
T Consensus 813 igr~Laq~~dapk~~a~~~ikcl-~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~-----------~Pna~~R 880 (1034)
T KOG4190|consen 813 IGRLLAQMEDAPKEGAGGNIKCL-ENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAP-----------GPNALTR 880 (1034)
T ss_pred ccchhHhhhcCcccCCCceeEec-ccCcchheeeeccchhhheeeecccccceeeEEeccCC-----------CCchhee
Confidence 432 2211111 1224444 23344444433 7888999875 433333333322111 1123457
Q ss_pred EEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEE-Ee
Q 000736 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF-YE 256 (1323)
Q Consensus 178 ~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~-~e 256 (1323)
+|+-.+.|+.+| ++- ..++|-+-|.++|..+....|..-..-.++ .|+.+.+|.+.- ++.+.+ |.
T Consensus 881 ~iaVa~~GN~lA-a~L------SnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~sal------dHslaVnWh 946 (1034)
T KOG4190|consen 881 AIAVADKGNKLA-AAL------SNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSAL------DHSLAVNWH 946 (1034)
T ss_pred EEEeccCcchhh-HHh------cCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcc------cceeEeeeh
Confidence 899999999998 552 247899999889987765544332222222 245555555444 355666 65
Q ss_pred -CCCeeEE
Q 000736 257 -RNGLERS 263 (1323)
Q Consensus 257 -~nGl~~~ 263 (1323)
.+|..|-
T Consensus 947 aldgimh~ 954 (1034)
T KOG4190|consen 947 ALDGIMHL 954 (1034)
T ss_pred hcCCeeee
Confidence 3555444
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.68 Score=50.85 Aligned_cols=81 Identities=25% Similarity=0.304 Sum_probs=44.1
Q ss_pred ccCHHHHHHHHHhcCCHHHHHHHHHHhCCHHHH---HHHHhhcCC---CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 000736 1003 VKCFEDAATTYFCCSSLEKAMKAYRASGNWSGV---LTVAGLLKL---GKDEVAKLAQELCEELQALGKPGEAAKIALDY 1076 (1323)
Q Consensus 1003 ~~~~~eAa~~y~~ag~~~kAl~~y~~ag~W~~a---l~lA~~l~~---~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~y 1076 (1323)
.++|++|+.+|++|++ +|..+.+|..| +.-|..+.+ ++.+...-+.+.+.-+ +..+..+|+.++.
T Consensus 27 ~~k~eeAadl~~~Aan------~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~-- 97 (288)
T KOG1586|consen 27 SNKYEEAAELYERAAN------MYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLE-- 97 (288)
T ss_pred CcchHHHHHHHHHHHH------HHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHH--
Confidence 3478899988887665 46666666654 222222111 2222222222222222 2346666666644
Q ss_pred cCCHHHHHHHHHHhcCHHHHH
Q 000736 1077 CGDVTNGISLLIDARDWEEAL 1097 (1323)
Q Consensus 1077 l~d~e~Av~~~i~~~~w~eA~ 1097 (1323)
.||+.|++.++|..|-
T Consensus 98 -----~aieIyt~~Grf~~aA 113 (288)
T KOG1586|consen 98 -----KAIEIYTDMGRFTMAA 113 (288)
T ss_pred -----HHHHHHHhhhHHHHHH
Confidence 3778888889887663
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.13 E-value=9.8 Score=45.29 Aligned_cols=82 Identities=16% Similarity=0.142 Sum_probs=55.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH---h----cCC
Q 000736 1007 EDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD---Y----CGD 1079 (1323)
Q Consensus 1007 ~eAa~~y~~ag~~~kAl~~y~~ag~W~~al~lA~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~---y----l~d 1079 (1323)
-+-+.+|+...++..|++.|.++.. .++-+| .++..||+-.-+.|+-.+|-+++.+ | +.-
T Consensus 562 ~qianiye~led~aqaie~~~q~~s---------lip~dp----~ilskl~dlydqegdksqafq~~ydsyryfp~nie~ 628 (840)
T KOG2003|consen 562 VQIANIYELLEDPAQAIELLMQANS---------LIPNDP----AILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIET 628 (840)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHhcc---------cCCCCH----HHHHHHHHHhhcccchhhhhhhhhhcccccCcchHH
Confidence 4556788888888888888765542 233343 4666778888788888888888765 2 233
Q ss_pred HHHHHHHHHHhcCHHHHHHHHH
Q 000736 1080 VTNGISLLIDARDWEEALRVAF 1101 (1323)
Q Consensus 1080 ~e~Av~~~i~~~~w~eA~rla~ 1101 (1323)
+|=....|++...|+.|+..-+
T Consensus 629 iewl~ayyidtqf~ekai~y~e 650 (840)
T KOG2003|consen 629 IEWLAAYYIDTQFSEKAINYFE 650 (840)
T ss_pred HHHHHHHHHhhHHHHHHHHHHH
Confidence 4555667788888888875433
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.93 E-value=4 Score=47.85 Aligned_cols=145 Identities=14% Similarity=0.141 Sum_probs=73.7
Q ss_pred EEecCCCEEE-EEeCCCcEEEEeCCCCeEEEeceecCcEEEEE-EcCCCCeEEEEeCCccEEEEe-ecCceeeeeeeccc
Q 000736 82 DYLMEKEALI-VGTSSGLLLLHSVDGNATEVVGRVEGGVRFIS-PSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEEL 158 (1323)
Q Consensus 82 ~~spdg~~La-~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~a-wSPDG~~LA~~s~d~tV~l~t-~~~d~~~e~~l~~~ 158 (1323)
.|.|+...|. +--..+.|.-|+..+++.+.... .+.+.++. ...+|.++++..+ +.++. ..+..++. +...
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~-p~~~~~~~~~d~~g~Lv~~~~g---~~~~~~~~~~~~t~--~~~~ 104 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFPS-PGGFSSGALIDAGGRLIACEHG---VRLLDPDTGGKITL--LAEP 104 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEEC-CCCcccceeecCCCeEEEEccc---cEEEeccCCceeEE--eccc
Confidence 4777777444 44567788889998776665554 34445444 4545444433322 22222 11111111 1111
Q ss_pred CCCceeccCccccCCCCeEEEEEecCCcEEEEeec---c-ccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCC
Q 000736 159 AEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSE---F-CNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG 234 (1323)
Q Consensus 159 ~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss---~-d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG 234 (1323)
.+.... .....+.-.|||.+-++..+ . .+.....+.+...+. .|........+-..-+.|+|||||
T Consensus 105 ~~~~~~---------~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg 174 (307)
T COG3386 105 EDGLPL---------NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDG 174 (307)
T ss_pred cCCCCc---------CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCC
Confidence 111111 22345667889987763333 0 111112245555565 566555444322223789999999
Q ss_pred CeEEEEec
Q 000736 235 ANIAAVYD 242 (1323)
Q Consensus 235 ~lIAs~s~ 242 (1323)
+.+-.+-.
T Consensus 175 ~tly~aDT 182 (307)
T COG3386 175 KTLYVADT 182 (307)
T ss_pred CEEEEEeC
Confidence 98776654
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=3.6 Score=53.73 Aligned_cols=58 Identities=7% Similarity=0.054 Sum_probs=41.6
Q ss_pred CEEEEEEecCCCEEEEEeCC-C----cEEEEeCCCCe--EEEeceecCcEEEEEEcCCCCeEEEEeCC
Q 000736 77 SITAFDYLMEKEALIVGTSS-G----LLLLHSVDGNA--TEVVGRVEGGVRFISPSPDGDLLGVTTGF 137 (1323)
Q Consensus 77 ~V~~v~~spdg~~La~as~d-G----~I~lw~~~~~~--~e~vg~~~~~I~~~awSPDG~~LA~~s~d 137 (1323)
.+..+.|||||+.||.+.+. | +|.+.|+.++. .+.+.... ..++|+|||+.|..++.+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~---~~~~w~~D~~~~~y~~~~ 192 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE---PSFVWANDSWTFYYVRKH 192 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc---eEEEEeeCCCEEEEEEec
Confidence 47789999999999876433 3 47788888765 23322211 458999999999988764
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.1 Score=60.06 Aligned_cols=132 Identities=20% Similarity=0.201 Sum_probs=45.2
Q ss_pred HHhcCHHHHHHHHHHc----C-CCcHHHHHHHHHHHhcchHHHHhhc-C-----CcHHHHHHHHHHHHHHhcccCHHHHH
Q 000736 942 LRLQRFENALKHIVSM----G-DSYHADCLNLMKKYAQLFPLGLKLI-T-----DPAKMEQVLEAWADHLSDVKCFEDAA 1010 (1323)
Q Consensus 942 ~~L~rye~Al~~l~~~----g-~~~~~~ale~~~~~~~ly~~AL~L~-~-----d~~~~~~i~~~~A~~L~~~~~~~eAa 1010 (1323)
...++|++|++.+.++ + +.....++.+.... +.|+++.+++ . ..+.-..++ -..+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~-------------~~~a 153 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRL-GDYDEAEELLEKLEELPAAPDSARFW-------------LALA 153 (280)
T ss_dssp ------------------------------H-HHHT-T-HHHHHHHHHHHHH-T---T-HHHH-------------HHHH
T ss_pred cccccccccccccccccccccccchhhHHHHHHHHH-hHHHHHHHHHHHHHhccCCCCCHHHH-------------HHHH
Confidence 4557777777666542 1 22334455555555 5555555544 1 001122233 3334
Q ss_pred HHHHhcCCHHHHHHHHHHhCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCH-------HHH
Q 000736 1011 TTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDV-------TNG 1083 (1323)
Q Consensus 1011 ~~y~~ag~~~kAl~~y~~ag~W~~al~lA~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~-------e~A 1083 (1323)
.+|.+.|++++|+++|.+ |+.+. |++ .++...++-.|.+.|++.+|..++..|.... ..-
T Consensus 154 ~~~~~~G~~~~A~~~~~~------al~~~------P~~-~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 220 (280)
T PF13429_consen 154 EIYEQLGDPDKALRDYRK------ALELD------PDD-PDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDAL 220 (280)
T ss_dssp HHHHHCCHHHHHHHHHHH------HHHH-------TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHH
T ss_pred HHHHHcCCHHHHHHHHHH------HHHcC------CCC-HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 444444555555554422 22211 111 2344455556666666666555554432111 233
Q ss_pred HHHHHHhcCHHHHHHHH
Q 000736 1084 ISLLIDARDWEEALRVA 1100 (1323)
Q Consensus 1084 v~~~i~~~~w~eA~rla 1100 (1323)
..+|...++.++|+...
T Consensus 221 a~~~~~lg~~~~Al~~~ 237 (280)
T PF13429_consen 221 AAAYLQLGRYEEALEYL 237 (280)
T ss_dssp HHHHHHHT-HHHHHHHH
T ss_pred HHHhccccccccccccc
Confidence 44555556666665543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.79 Score=58.32 Aligned_cols=110 Identities=9% Similarity=-0.107 Sum_probs=59.7
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHhcC----CHHH----HHHHHHHhCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHH
Q 000736 992 VLEAWADHLSDVKCFEDAATTYFCCS----SLEK----AMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQA 1062 (1323)
Q Consensus 992 i~~~~A~~L~~~~~~~eAa~~y~~ag----~~~k----Al~~y~~ag~W~~al~lA~~l-~~~~~~~~~l~~~la~~L~~ 1062 (1323)
++..+|.-+...+++++|..+|.+|= +... .-.+|...|++++|+....+. .++|.... ....++..+..
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~-~~~~~~~~~~~ 418 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA-AGITKLWITYY 418 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh-hHHHHHHHHHh
Confidence 44556677777777777777777652 1111 124556677777776555431 22232211 11223333445
Q ss_pred cCChHHHHHHHHHhcC-----CHH---HHHHHHHHhcCHHHHHHHHHh
Q 000736 1063 LGKPGEAAKIALDYCG-----DVT---NGISLLIDARDWEEALRVAFM 1102 (1323)
Q Consensus 1063 ~~~~~eAa~i~~~yl~-----d~e---~Av~~~i~~~~w~eA~rla~~ 1102 (1323)
.|++++|...+.+.+. ++. ....+|...+++++|.....+
T Consensus 419 ~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~ 466 (553)
T PRK12370 419 HTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKE 466 (553)
T ss_pred ccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6778777777766431 121 133455567777887766544
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.83 Score=56.09 Aligned_cols=150 Identities=17% Similarity=0.191 Sum_probs=88.1
Q ss_pred CceeEEEEccCCCeEEEEec-CCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCC-----CeeEEEEccCCC
Q 000736 223 FMGAVLEWMPSGANIAAVYD-RKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMS-----DLLAAVVRFEEY 296 (1323)
Q Consensus 223 ~~v~slawsPdG~lIAs~s~-d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg-----~~LA~~~~d~~~ 296 (1323)
.+++.|||- ||+.+.-..- .. .+.++|=|.+ ..|+| ..|..++|+|-+ .+||+....
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~----~gE~kfGds~--viGqF-------EhV~GlsW~P~~~~~~paLLAVQHkk--- 82 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLH----NGEPKFGDSK--VIGQF-------EHVHGLSWAPPCTADTPALLAVQHKK--- 82 (671)
T ss_pred ccccceEec-CCCEEEEEeeeee----CCccccCCcc--Eeecc-------ceeeeeeecCcccCCCCceEEEeccc---
Confidence 356889995 7776543321 10 1223332221 23333 359999999964 478887655
Q ss_pred CeEEEEEee-----CCeeEEEeEEEEecCCc---EEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCE
Q 000736 297 DSVKICFFS-----NNHWYLKYEIRYLRRDG---IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSK 368 (1323)
Q Consensus 297 ~~V~LW~~~-----n~~wylkq~l~~~~~~~---~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~ 368 (1323)
.|.+|.+. ..+|...|+-.....-+ ....|||..+. |.+.+....- ..+++. .|+..
T Consensus 83 -hVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~i-L~VLT~~dvS----V~~sV~---------~d~sr 147 (671)
T PF15390_consen 83 -HVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAI-LTVLTARDVS----VLPSVH---------CDSSR 147 (671)
T ss_pred -eEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCce-EEEEecCcee----Eeeeee---------eCCce
Confidence 49999985 45777777655433222 45789999886 6666643211 122222 24444
Q ss_pred EEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEE--EEEC
Q 000736 369 ILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLC--VVDL 422 (1323)
Q Consensus 369 l~lt~l~~~~vPppm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~--lw~~ 422 (1323)
++. .+.-.+.|.+-.|.+|| ++|+++-.. .++ +||-
T Consensus 148 Vka---------------Di~~~G~IhCACWT~DG--~RLVVAvGS-sLHSyiWd~ 185 (671)
T PF15390_consen 148 VKA---------------DIKTSGLIHCACWTKDG--QRLVVAVGS-SLHSYIWDS 185 (671)
T ss_pred EEE---------------eccCCceEEEEEecCcC--CEEEEEeCC-eEEEEEecC
Confidence 442 12345679999999999 777665433 454 5554
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.11 Score=64.25 Aligned_cols=199 Identities=17% Similarity=0.178 Sum_probs=113.1
Q ss_pred CCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECC-CCceeeeeccCCC-ceeEEEEccCCC---eEEEEecCCCCCC
Q 000736 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAF-MGAVLEWMPSGA---NIAAVYDRKSENK 248 (1323)
Q Consensus 174 ~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~-~G~l~~t~e~~~~-~v~slawsPdG~---lIAs~s~d~~~~~ 248 (1323)
.++..++.+|-|+-+| .++.. + +-|-|.+ .+..-.-+...+. .|..+.|||... .|++.+..
T Consensus 25 ~~~~a~si~p~grdi~-lAsr~------g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~q----- 91 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIV-LASRQ------G-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQ----- 91 (1081)
T ss_pred Ccccceeeccccchhh-hhhhc------C-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcc-----
Confidence 3456677788887666 44311 1 2333432 1211111111111 245677777654 45555442
Q ss_pred CCeEEEEeC--CCeeEEEEEeccCCCCcEEEEEEccCC-CeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCc-EE
Q 000736 249 CPSIVFYER--NGLERSSFDINEQIDSTVELLKWNCMS-DLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IR 324 (1323)
Q Consensus 249 ~~~V~~~e~--nGl~~~~f~l~~~~~~~V~~laWSpDg-~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~-~~ 324 (1323)
+-.+|+. ...+.-+|.+.++ ...|..+-|+|.- .+||+.+-|. .|..|++...|.+.-..-.. ... ..
T Consensus 92 --kaiiwnlA~ss~~aIef~lhgh-sraitd~n~~~q~pdVlatcsvdt---~vh~wd~rSp~~p~ys~~~w--~s~asq 163 (1081)
T KOG0309|consen 92 --KAIIWNLAKSSSNAIEFVLHGH-SRAITDINFNPQHPDVLATCSVDT---YVHAWDMRSPHRPFYSTSSW--RSAASQ 163 (1081)
T ss_pred --hhhhhhhhcCCccceEEEEecC-ccceeccccCCCCCcceeeccccc---cceeeeccCCCcceeeeecc--cccCce
Confidence 2234552 2223346666654 4579999999975 5899999998 89999998766432110000 011 22
Q ss_pred EEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeee-cCCCCEEEEEEecCC
Q 000736 325 FMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKS 403 (1323)
Q Consensus 325 v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l-~~~~~V~~VaFSpdg 403 (1323)
|.|+-..| .+.+.+.|+.+.+|+++.+.. |.| ++ .|-..|+.++|..--
T Consensus 164 Vkwnyk~p--------------------------~vlasshg~~i~vwd~r~gs~--pl~--s~K~~vs~vn~~~fnr~~ 213 (1081)
T KOG0309|consen 164 VKWNYKDP--------------------------NVLASSHGNDIFVWDLRKGST--PLC--SLKGHVSSVNSIDFNRFK 213 (1081)
T ss_pred eeecccCc--------------------------chhhhccCCceEEEeccCCCc--ceE--EecccceeeehHHHhhhh
Confidence 33333222 334456777788888877654 344 33 256677888886543
Q ss_pred CCCEEEEEECCCcEEEEECCC
Q 000736 404 SKNCLAAILSDGCLCVVDLPA 424 (1323)
Q Consensus 404 ~~~~LAs~s~Dgti~lw~~~~ 424 (1323)
. ..+.+.+.||+|++|+.+.
T Consensus 214 ~-s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 214 Y-SEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred h-hhhcccCCCCceeeecccc
Confidence 1 4677888999999999864
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.73 E-value=3.1 Score=56.19 Aligned_cols=160 Identities=11% Similarity=-0.037 Sum_probs=100.1
Q ss_pred cHHHHhcCHHHHHHHHHHcCCC------cHHHHHHHHHHHhcchHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHH
Q 000736 939 TIDLRLQRFENALKHIVSMGDS------YHADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFE 1007 (1323)
Q Consensus 939 ~Id~~L~rye~Al~~l~~~g~~------~~~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~ 1007 (1323)
.+....|+|++|+.++.++... ++..+ ....+. +.++.|++++ .+|.. ..+...++..+...++++
T Consensus 517 ~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la-~all~~-Gd~~eA~~~l~qAL~l~P~~-~~l~~~La~~l~~~Gr~~ 593 (987)
T PRK09782 517 YQAYQVEDYATALAAWQKISLHDMSNEDLLAAA-NTAQAA-GNGAARDRWLQQAEQRGLGD-NALYWWLHAQRYIPGQPE 593 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHH-HHHHHC-CCHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHhCCCHH
Confidence 4445689999999999876421 11112 223455 7788888777 23332 233334455556669999
Q ss_pred HHHHHHHhcCC-------HHHHHHHHHHhCCHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC-
Q 000736 1008 DAATTYFCCSS-------LEKAMKAYRASGNWSGVLTVAGL-LKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG- 1078 (1323)
Q Consensus 1008 eAa~~y~~ag~-------~~kAl~~y~~ag~W~~al~lA~~-l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~- 1078 (1323)
+|..+|.++-. +-....++.+.|++++|+....+ +..+|+.. .....++..|...|++.+|..+|.+-+.
T Consensus 594 eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~-~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 594 LALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNS-NYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99988887753 11223566677888888665543 23344443 5777888899999999999888877332
Q ss_pred ---CH---HHHHHHHHHhcCHHHHHHHHHh
Q 000736 1079 ---DV---TNGISLLIDARDWEEALRVAFM 1102 (1323)
Q Consensus 1079 ---d~---e~Av~~~i~~~~w~eA~rla~~ 1102 (1323)
++ .....+|...+++++|+....+
T Consensus 673 ~P~~~~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 673 LPDDPALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 22 3334566777778887754433
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=94.73 E-value=2.1 Score=50.84 Aligned_cols=158 Identities=18% Similarity=0.120 Sum_probs=76.7
Q ss_pred EEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecC----CcEEEEeecc
Q 000736 119 VRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD----GKYFATLSEF 194 (1323)
Q Consensus 119 I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspD----G~~lAtvss~ 194 (1323)
-++|+|.|||+++++ ...|.|.+.+.+.+....+.... . .+.........|++.|+ |.++++.+..
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~-~--------v~~~~~~gllgia~~p~f~~n~~lYv~~t~~ 73 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLP-E--------VFADGERGLLGIAFHPDFASNGYLYVYYTNA 73 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-T-T--------TBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecccc-c--------ccccccCCcccceeccccCCCCEEEEEEEcc
Confidence 478999999988775 55899998875555411111000 0 01122346688999995 6655522211
Q ss_pred ccccCCCC--EEEEEECCCC--cee-----eeecc----CCCceeEEEEccCCCeEEEEecCCC-------CCCCCeEEE
Q 000736 195 CNSSKLHK--RLKVWERDSG--TLQ-----ASSEL----KAFMGAVLEWMPSGANIAAVYDRKS-------ENKCPSIVF 254 (1323)
Q Consensus 195 d~~~~~d~--~IrVWd~~~G--~l~-----~t~e~----~~~~v~slawsPdG~lIAs~s~d~~-------~~~~~~V~~ 254 (1323)
+.. .... .|.-|....+ .+. ....+ .......|+|.|||.+.++.++..+ ......|.-
T Consensus 74 ~~~-~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilr 152 (331)
T PF07995_consen 74 DED-GGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILR 152 (331)
T ss_dssp -TS-SSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEE
T ss_pred cCC-CCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEE
Confidence 000 1111 2222333222 111 11111 1223467999999988777765432 112344544
Q ss_pred EeCCCee-------------EEEEEeccCCCCcEEEEEEccC-CCeeEEE
Q 000736 255 YERNGLE-------------RSSFDINEQIDSTVELLKWNCM-SDLLAAV 290 (1323)
Q Consensus 255 ~e~nGl~-------------~~~f~l~~~~~~~V~~laWSpD-g~~LA~~ 290 (1323)
.+.+|.. ...|.. +-.....++|+|. |++.++=
T Consensus 153 i~~dG~~p~dnP~~~~~~~~~~i~A~---GlRN~~~~~~d~~tg~l~~~d 199 (331)
T PF07995_consen 153 IDPDGSIPADNPFVGDDGADSEIYAY---GLRNPFGLAFDPNTGRLWAAD 199 (331)
T ss_dssp EETTSSB-TTSTTTTSTTSTTTEEEE-----SEEEEEEEETTTTEEEEEE
T ss_pred ecccCcCCCCCccccCCCceEEEEEe---CCCccccEEEECCCCcEEEEc
Confidence 5555531 001100 0123568999999 8777653
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.62 E-value=1.8 Score=48.07 Aligned_cols=106 Identities=20% Similarity=0.166 Sum_probs=49.6
Q ss_pred CcHHHHHHHHHHHHHHhcccCHHHHHHHHHhcCCH--------------HHHHHHHHHhCCHHHH---HHHHhh-c-CCC
Q 000736 985 DPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL--------------EKAMKAYRASGNWSGV---LTVAGL-L-KLG 1045 (1323)
Q Consensus 985 d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~--------------~kAl~~y~~ag~W~~a---l~lA~~-l-~~~ 1045 (1323)
+.++-+..+++=.+..+.++.+=.|+..|++++.. +||...|.++|.-+-| +.-|.+ + +..
T Consensus 46 ~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~ 125 (308)
T KOG1585|consen 46 KFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVK 125 (308)
T ss_pred cHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCC
Confidence 44444444444444555555555555555555432 4455555555542211 111111 0 223
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHH
Q 000736 1046 KDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEAL 1097 (1323)
Q Consensus 1046 ~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~e~Av~~~i~~~~w~eA~ 1097 (1323)
|++--.++.+-+..+++.++-..|-.+|-+ +-+.|++++.|.||-
T Consensus 126 Pd~AlqlYqralavve~~dr~~ma~el~gk-------~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 126 PDDALQLYQRALAVVEEDDRDQMAFELYGK-------CSRVLVRLEKFTEAA 170 (308)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHH-------hhhHhhhhHHhhHHH
Confidence 444344555555555555555555444333 334566666666664
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=94.61 E-value=11 Score=50.07 Aligned_cols=128 Identities=14% Similarity=-0.028 Sum_probs=78.1
Q ss_pred HHHhcchHHHHhhc----C-C---cHHHHHHHHHHHHHHhcccCHHHHHHHHHhcC--C-------HHHHHH---HHHHh
Q 000736 970 KKYAQLFPLGLKLI----T-D---PAKMEQVLEAWADHLSDVKCFEDAATTYFCCS--S-------LEKAMK---AYRAS 1029 (1323)
Q Consensus 970 ~~~~~ly~~AL~L~----~-d---~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag--~-------~~kAl~---~y~~a 1029 (1323)
... +.|++|++.| . . |.. ....+|+.+...+++++|..+|.++- + .+.... +|...
T Consensus 248 l~~-g~~~eA~~~~~~ll~~~~~~P~~---a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 248 LAR-DRYKDVISEYQRLKAEGQIIPPW---AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHh-hhHHHHHHHHHHhhccCCCCCHH---HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 455 6688888777 1 1 222 22235888888899999999888762 2 112222 55677
Q ss_pred CCHHHHHHHHhhcCC-CH-------------H-HHHHHHHHHHHHHHHcCChHHHHHHHHHhc----CC---HHHHHHHH
Q 000736 1030 GNWSGVLTVAGLLKL-GK-------------D-EVAKLAQELCEELQALGKPGEAAKIALDYC----GD---VTNGISLL 1087 (1323)
Q Consensus 1030 g~W~~al~lA~~l~~-~~-------------~-~~~~l~~~la~~L~~~~~~~eAa~i~~~yl----~d---~e~Av~~~ 1087 (1323)
|++++|+.....+.. .| + ...+....+|..+...|++.+|..++.+-+ ++ .-.-..+|
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~ 403 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVL 403 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 889988877554321 11 1 222355677888888899999988877632 11 11223455
Q ss_pred HHhcCHHHHHHHHH
Q 000736 1088 IDARDWEEALRVAF 1101 (1323)
Q Consensus 1088 i~~~~w~eA~rla~ 1101 (1323)
...+++++|+.+..
T Consensus 404 ~~~g~~~~A~~~l~ 417 (765)
T PRK10049 404 QARGWPRAAENELK 417 (765)
T ss_pred HhcCCHHHHHHHHH
Confidence 56677777776544
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.055 Score=67.68 Aligned_cols=144 Identities=14% Similarity=0.153 Sum_probs=95.9
Q ss_pred cCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCC
Q 000736 171 SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCP 250 (1323)
Q Consensus 171 ~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~ 250 (1323)
.++...++++||++-++|+ +|+. .|.|+++|..+|.-......|...++.|-=|-||.+..+.+.-. .+
T Consensus 1099 d~~~~fTc~afs~~~~hL~-vG~~------~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S----~P 1167 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLA-VGSH------AGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSS----SP 1167 (1516)
T ss_pred ccccceeeEEeecCCceEE-eeec------cceEEEEEccCccccccccccccccccccccCCcceeeeecccc----Cc
Confidence 5677889999999999999 8865 37899999999987766667888888888888998765554321 35
Q ss_pred eEEEEeCC--CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeE---EEeEEEEecCCcEEE
Q 000736 251 SIVFYERN--GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY---LKYEIRYLRRDGIRF 325 (1323)
Q Consensus 251 ~V~~~e~n--Gl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wy---lkq~l~~~~~~~~~v 325 (1323)
...+|+.. |.....| ..-..+.||...+.=|.|+... .+.|||+.+.+-. |...+.. .-+....
T Consensus 1168 lsaLW~~~s~~~~~Hsf-------~ed~~vkFsn~~q~r~~gt~~d---~a~~YDvqT~~~l~tylt~~~~~-~y~~n~a 1236 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPRHSF-------DEDKAVKFSNSLQFRALGTEAD---DALLYDVQTCSPLQTYLTDTVTS-SYSNNLA 1236 (1516)
T ss_pred hHHHhccccccCccccc-------cccceeehhhhHHHHHhccccc---ceEEEecccCcHHHHhcCcchhh-hhhcccc
Confidence 67789742 1111112 1234678887766666665443 6899999887652 2211110 0112567
Q ss_pred EEccCCCcEEEEE
Q 000736 326 MWHPTKPLQLICW 338 (1323)
Q Consensus 326 ~Wsp~~~~~L~~~ 338 (1323)
.|+|... |+++
T Consensus 1237 ~FsP~D~--LIln 1247 (1516)
T KOG1832|consen 1237 HFSPCDT--LILN 1247 (1516)
T ss_pred ccCCCcc--eEee
Confidence 8888775 4454
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.71 Score=58.70 Aligned_cols=86 Identities=15% Similarity=0.044 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHhcC-----C----HHHHHHHHHHhCCHHHHHHHHhhcC-CCHHHHHHHHHHHHHHH
Q 000736 991 QVLEAWADHLSDVKCFEDAATTYFCCS-----S----LEKAMKAYRASGNWSGVLTVAGLLK-LGKDEVAKLAQELCEEL 1060 (1323)
Q Consensus 991 ~i~~~~A~~L~~~~~~~eAa~~y~~ag-----~----~~kAl~~y~~ag~W~~al~lA~~l~-~~~~~~~~l~~~la~~L 1060 (1323)
.++..+|.-+...|++++|...|+++- + +..+ .++...|++++|+..+.+.- ..+.........+|..+
T Consensus 373 ~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~-~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l 451 (553)
T PRK12370 373 DIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKL-WITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFL 451 (553)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHH-HHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHH
Confidence 355667888888899999999998872 1 1112 23556788888887765531 00111123456678888
Q ss_pred HHcCChHHHHHHHHHhc
Q 000736 1061 QALGKPGEAAKIALDYC 1077 (1323)
Q Consensus 1061 ~~~~~~~eAa~i~~~yl 1077 (1323)
...|++++|...+.+..
T Consensus 452 ~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 452 SLKGKHELARKLTKEIS 468 (553)
T ss_pred HhCCCHHHHHHHHHHhh
Confidence 88999999999888754
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.11 Score=64.40 Aligned_cols=114 Identities=19% Similarity=0.146 Sum_probs=75.7
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEE---EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeee
Q 000736 78 ITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE---VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1323)
Q Consensus 78 V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e---~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~ 154 (1323)
|.-=.+...++.||+|++.|-+.+++..+++.. .-| -++.+...+.|++..++|.|+..|.|.+.. ...+
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~-~~~~~~~~~vs~~e~lvAagt~~g~V~v~q----l~~~-- 108 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEG-ATGITCVRSVSSVEYLVAAGTASGRVSVFQ----LNKE-- 108 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhcccccC-ccceEEEEEecchhHhhhhhcCCceEEeeh----hhcc--
Confidence 433445778899999999999999999886543 223 256677889999999999999988886532 1111
Q ss_pred ecccCCCceeccCccc-cCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEEC
Q 000736 155 LEELAEGFDVHEPELS-SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWER 209 (1323)
Q Consensus 155 l~~~~~~~~Vs~tqf~-~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~ 209 (1323)
+.+ +-..++ .+. .|...|++++|++||..|- +|. ..|+|-.-..
T Consensus 109 ~p~--~~~~~t--~~d~~~~~rVTal~Ws~~~~k~y-sGD------~~Gkv~~~~L 153 (726)
T KOG3621|consen 109 LPR--DLDYVT--PCDKSHKCRVTALEWSKNGMKLY-SGD------SQGKVVLTEL 153 (726)
T ss_pred CCC--cceeec--cccccCCceEEEEEecccccEEe-ecC------CCceEEEEEe
Confidence 111 011111 111 3567899999999999887 552 2356654444
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.025 Score=68.76 Aligned_cols=194 Identities=12% Similarity=0.112 Sum_probs=118.5
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCC--CCCEEEEEEec-CCCEEEEEe----
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEP--GDSITAFDYLM-EKEALIVGT---- 94 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~V~~v~~sp-dg~~La~as---- 94 (1323)
.|++.-++.++.++..++.++.|-.-.. ....- .++.+.| ...-++++|.+ |...||.|.
T Consensus 60 kcva~~y~~d~cIlavG~atG~I~l~s~--r~~hd-----------Ss~E~tp~~ar~Ct~lAwneLDtn~LAagldkhr 126 (783)
T KOG1008|consen 60 KCVASFYGNDRCILAVGSATGNISLLSV--RHPHD-----------SSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHR 126 (783)
T ss_pred eeehhhcCCchhhhhhccccCceEEeec--CCccc-----------ccceecccccccccccccccccHHHHHhhhhhhc
Confidence 5777778888889999988887776655 12111 0122233 24568888977 567777774
Q ss_pred CCCcEEEEeCCCCe------EEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCc
Q 000736 95 SSGLLLLHSVDGNA------TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPE 168 (1323)
Q Consensus 95 ~dG~I~lw~~~~~~------~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tq 168 (1323)
.|-.+.|||+.++. ....+....+..+++|--|.++|.+|.....+.+.+--|...+...+.+ +
T Consensus 127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT----k------ 196 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT----K------ 196 (783)
T ss_pred ccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh----h------
Confidence 34568999998741 2233334567889999999999888888777765432233222221111 1
Q ss_pred cccCCCCeEEEEEec-CCcEEEEeeccccccCCCCEEEEEECC-C-Cceeeeec----cCCCceeEEEEccCCC-eEEEE
Q 000736 169 LSSSFSFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERD-S-GTLQASSE----LKAFMGAVLEWMPSGA-NIAAV 240 (1323)
Q Consensus 169 f~~~~~~i~~isWsp-DG~~lAtvss~d~~~~~d~~IrVWd~~-~-G~l~~t~e----~~~~~v~slawsPdG~-lIAs~ 240 (1323)
.+..++-.| .+.||+ ... ++.|-+||.. . -.+..+.. +....+..++|.|--. ++|+.
T Consensus 197 ------~vqG~tVdp~~~nY~c-s~~-------dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l 262 (783)
T KOG1008|consen 197 ------YVQGITVDPFSPNYFC-SNS-------DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVL 262 (783)
T ss_pred ------hcccceecCCCCCcee-ccc-------cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhh
Confidence 123455556 567888 432 5789999931 1 11111111 1222468999999754 67888
Q ss_pred ecCCCCCCCCeEEEEeC
Q 000736 241 YDRKSENKCPSIVFYER 257 (1323)
Q Consensus 241 s~d~~~~~~~~V~~~e~ 257 (1323)
+++ ..+|++++.
T Consensus 263 ~Rd-----S~tIrlydi 274 (783)
T KOG1008|consen 263 SRD-----SITIRLYDI 274 (783)
T ss_pred ccC-----cceEEEecc
Confidence 887 468888873
|
|
| >KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.42 Score=61.02 Aligned_cols=58 Identities=26% Similarity=0.289 Sum_probs=43.8
Q ss_pred HHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCCchhHHHHHHHHHH
Q 000736 1060 LQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLE 1118 (1323)
Q Consensus 1060 L~~~~~~~eAa~i~~~yl~d~e~Av~~~i~~~~w~eA~rla~~~~~~dLie~V~~~l~e 1118 (1323)
+.+.|+..++..+.-- .+|++.-+..+|+.++|++|+.+...+..++|.=...|.|..
T Consensus 514 ~~~~~~~e~ll~fA~l-~~d~~~vv~~~~q~e~yeeaLevL~~~~~~el~yk~ap~Li~ 571 (911)
T KOG2034|consen 514 LASHGRQEELLQFANL-IKDYEFVVSYWIQQENYEEALEVLLNQRNPELFYKYAPELIT 571 (911)
T ss_pred HHHccCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHhhhHHHh
Confidence 4567777777766554 799999999999999999999887777666665445555543
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.1 Score=38.31 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=28.6
Q ss_pred eceecCcEEEEEEcCCCCeEEEEeCCccEEEEe
Q 000736 112 VGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT 144 (1323)
Q Consensus 112 vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t 144 (1323)
...+...|.+++|+|+++.+++++.|+.+.+|+
T Consensus 8 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 8 LKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 344678899999999999999999999998873
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.79 Score=55.76 Aligned_cols=108 Identities=11% Similarity=-0.019 Sum_probs=70.7
Q ss_pred hhccccHHHHhcCHHHHHHHHHHcCCC------cHHHHHHHHHHHhcchHHHHhhc-----CCcHHHHHHHHHHHHHHhc
Q 000736 934 LLMRYTIDLRLQRFENALKHIVSMGDS------YHADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSD 1002 (1323)
Q Consensus 934 ~~~~~~Id~~L~rye~Al~~l~~~g~~------~~~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~ 1002 (1323)
...+..+...-|+|++|.+.+.+.... ++-.+-++.... +.|+.|.+.+ .+|+..-......|+....
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~-g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQR-GDEARANQHLERAAELADNDQLPVEITRVRIQLA 165 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 345556666668999999888875321 123334444666 7888888877 2333322222233888888
Q ss_pred ccCHHHHHHHHHhcCCH--------HHHHHHHHHhCCHHHHHHHHhhc
Q 000736 1003 VKCFEDAATTYFCCSSL--------EKAMKAYRASGNWSGVLTVAGLL 1042 (1323)
Q Consensus 1003 ~~~~~eAa~~y~~ag~~--------~kAl~~y~~ag~W~~al~lA~~l 1042 (1323)
.+++++|...+.+.-+. .-..++|...|+|++++.+...+
T Consensus 166 ~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l 213 (398)
T PRK10747 166 RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSM 213 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999988876322 35568888899999998555443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.17 E-value=2.4 Score=48.78 Aligned_cols=136 Identities=17% Similarity=0.255 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHhcCC-H-------HHHHHHHHHhCCHHHHHHHHhhc-CCCH----HHHHHHH
Q 000736 987 AKMEQVLEAWADHLSDVKCFEDAATTYFCCSS-L-------EKAMKAYRASGNWSGVLTVAGLL-KLGK----DEVAKLA 1053 (1323)
Q Consensus 987 ~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~-~-------~kAl~~y~~ag~W~~al~lA~~l-~~~~----~~~~~l~ 1053 (1323)
++..-+....|+-++..|-++.|..+|...-+ . +.-+..|....+|++|+.+|.++ .+++ -++...+
T Consensus 104 ~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfy 183 (389)
T COG2956 104 EQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFY 183 (389)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHH
Confidence 34445666889999999999999999999866 3 33456788888999999999965 1122 3566777
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhcCCHHHHH-------HHHHHhcCHHHHHHH---HHhcCCchhHHHHHHHHHHHHHHH
Q 000736 1054 QELCEELQALGKPGEAAKIALDYCGDVTNGI-------SLLIDARDWEEALRV---AFMHRREDLITKVKHASLECASSL 1123 (1323)
Q Consensus 1054 ~~la~~L~~~~~~~eAa~i~~~yl~d~e~Av-------~~~i~~~~w~eA~rl---a~~~~~~dLie~V~~~l~e~~~~~ 1123 (1323)
-++|.......++..|-.++.+-+.--...+ +++..-++|..|++. +..++ ++.+..|.+.|.+++.++
T Consensus 184 CELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn-~~yl~evl~~L~~~Y~~l 262 (389)
T COG2956 184 CELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQN-PEYLSEVLEMLYECYAQL 262 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHh
Confidence 8888888777888887777666332111111 234455666666543 33444 677766777777665543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.10 E-value=1 Score=55.22 Aligned_cols=102 Identities=15% Similarity=0.077 Sum_probs=66.7
Q ss_pred cchHHHHhhc-CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhc-CCHHHHHHHHHHhCCHHHH--HH--HHhhcCCCHH
Q 000736 974 QLFPLGLKLI-TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCC-SSLEKAMKAYRASGNWSGV--LT--VAGLLKLGKD 1047 (1323)
Q Consensus 974 ~ly~~AL~L~-~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~a-g~~~kAl~~y~~ag~W~~a--l~--lA~~l~~~~~ 1047 (1323)
+.-++||+.+ .-+..-..+.+.+|++|+..++|.+|..+|... .+..+-.+.-++++.-..+ +. +....+..++
T Consensus 93 nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e 172 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPE 172 (652)
T ss_pred ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCc
Confidence 3456666666 222222558889999999999999999999988 4444444444433321111 11 1233344445
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000736 1048 EVAKLAQELCEELQALGKPGEAAKIALD 1075 (1323)
Q Consensus 1048 ~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1323)
.--+++...|..+.+.|+|.+|.+++..
T Consensus 173 ~syel~yN~Ac~~i~~gky~qA~elL~k 200 (652)
T KOG2376|consen 173 DSYELLYNTACILIENGKYNQAIELLEK 200 (652)
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 4567888899999999999999999777
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=94.01 E-value=1.1 Score=46.89 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=29.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Q 000736 1066 PGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKE 1129 (1323)
Q Consensus 1066 ~~eAa~i~~~yl~d~e~Av~~~i~~~~w~eA~rla~~~~~~dLie~V~~~l~e~~~~~~e~l~e 1129 (1323)
|.-|+.+|+. +|+++.|.+.+ +.|+..|..+. + ...+.+.++..++.|.+
T Consensus 106 ~~~ag~c~L~-lG~~~~A~~aF------~~Ai~~~~~~~--~-----~~~l~~~A~~~L~~l~~ 155 (157)
T PRK15363 106 PWAAAECYLA-CDNVCYAIKAL------KAVVRICGEVS--E-----HQILRQRAEKMLQQLSD 155 (157)
T ss_pred HHHHHHHHHH-cCCHHHHHHHH------HHHHHHhccCh--h-----HHHHHHHHHHHHHHhhc
Confidence 4457888888 88888888775 44555553332 2 22444555555555543
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=93.76 E-value=21 Score=43.31 Aligned_cols=105 Identities=11% Similarity=0.101 Sum_probs=58.7
Q ss_pred CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCC---CCEEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000736 31 EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPG---DSITAFDYLMEKEALIVGTSSGLLLLHSVDGN 107 (1323)
Q Consensus 31 ~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~V~~v~~spdg~~La~as~dG~I~lw~~~~~ 107 (1323)
.++.||+.+.++.++.+|. .+++..|+.. ++.. ..+.+. ..+.+ .-.-++..+.+++.+|.+.-+|..++
T Consensus 68 ~~~~vy~~~~~g~l~ald~--~tG~~~W~~~-~~~~---~~~~~~~~~~~~~~-~~~v~~~~v~v~~~~g~l~ald~~tG 140 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDA--DTGKEIWSVD-LSEK---DGWFSKNKSALLSG-GVTVAGGKVYIGSEKGQVYALNAEDG 140 (394)
T ss_pred ECCEEEEECCCCeEEEEEC--CCCcEeeEEc-CCCc---cccccccccccccc-ccEEECCEEEEEcCCCEEEEEECCCC
Confidence 5789999999888999999 7888888754 1110 001000 00000 00113567778888999999998876
Q ss_pred eEEEeceecCcEEE-EEEcCCCCeEEEEeCCccEEEEe
Q 000736 108 ATEVVGRVEGGVRF-ISPSPDGDLLGVTTGFGQILVMT 144 (1323)
Q Consensus 108 ~~e~vg~~~~~I~~-~awSPDG~~LA~~s~d~tV~l~t 144 (1323)
++.-.-...+.+.+ ... .+..|.+++.++.|.-++
T Consensus 141 ~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald 176 (394)
T PRK11138 141 EVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALN 176 (394)
T ss_pred CCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEE
Confidence 54311111222221 111 134555666777665554
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.14 Score=42.51 Aligned_cols=33 Identities=30% Similarity=0.495 Sum_probs=28.2
Q ss_pred cCcEEEEEEcCCCCeEEEEeCCccEEEEeecCc
Q 000736 116 EGGVRFISPSPDGDLLGVTTGFGQILVMTHDWD 148 (1323)
Q Consensus 116 ~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d 148 (1323)
...|.+++|||...+||+++.+|.|.+.--+|.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCc
Confidence 456999999999999999999999988654554
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.5 Score=57.67 Aligned_cols=109 Identities=14% Similarity=-0.003 Sum_probs=60.9
Q ss_pred chhccccHHHHhcCHHHHHHHHHHcCCCc------HHHHHHHHHHHhcchHHHHhhc-C----CcHHHHHHHHHHHHHHh
Q 000736 933 PLLMRYTIDLRLQRFENALKHIVSMGDSY------HADCLNLMKKYAQLFPLGLKLI-T----DPAKMEQVLEAWADHLS 1001 (1323)
Q Consensus 933 ~~~~~~~Id~~L~rye~Al~~l~~~g~~~------~~~ale~~~~~~~ly~~AL~L~-~----d~~~~~~i~~~~A~~L~ 1001 (1323)
....++.+...-|+|+.|.+++.+..+.. .-.+-+..... +.|+.|.+++ . .|.....+...+|+.+.
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~-g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l 164 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQR-GDEARANQHLEEAAELAGNDNILVEIARTRILL 164 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH
Confidence 34556677777777777777777653211 11222344555 6666666666 1 22222233444567777
Q ss_pred cccCHHHHHHHHHhcCC-----H---HHHHHHHHHhCCHHHHHHHHhhc
Q 000736 1002 DVKCFEDAATTYFCCSS-----L---EKAMKAYRASGNWSGVLTVAGLL 1042 (1323)
Q Consensus 1002 ~~~~~~eAa~~y~~ag~-----~---~kAl~~y~~ag~W~~al~lA~~l 1042 (1323)
..+++++|...+.+.-. . .-+..+|...|+|+++..+..++
T Consensus 165 ~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l 213 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNM 213 (409)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77777777766665421 1 23446666777777666555443
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.48 Score=52.10 Aligned_cols=103 Identities=17% Similarity=0.085 Sum_probs=75.2
Q ss_pred chHHHHhhcCCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhc----------CCHHHHHHHHHHhCCHHHHHHHHhh-cC
Q 000736 975 LFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCC----------SSLEKAMKAYRASGNWSGVLTVAGL-LK 1043 (1323)
Q Consensus 975 ly~~AL~L~~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~a----------g~~~kAl~~y~~ag~W~~al~lA~~-l~ 1043 (1323)
.|.+||.+-.+ --+|++.||-||..+++|++|-..|++| +-++.+--|..++|+...|...-++ +.
T Consensus 91 ~YrkAlsl~p~---~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~ 167 (250)
T COG3063 91 SYRKALSLAPN---NGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE 167 (250)
T ss_pred HHHHHHhcCCC---ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence 37777777611 2358999999999999999999999987 4567777888888987777543332 32
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHH
Q 000736 1044 LGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVT 1081 (1323)
Q Consensus 1044 ~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~e 1081 (1323)
.++.. ..-..++|..+.+.|+|.+|-..+.+|.+-..
T Consensus 168 ~dp~~-~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 168 LDPQF-PPALLELARLHYKAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred hCcCC-ChHHHHHHHHHHhcccchHHHHHHHHHHhccc
Confidence 23222 23556788899999999999888888755443
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.15 Score=42.21 Aligned_cols=32 Identities=13% Similarity=0.324 Sum_probs=29.3
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000736 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGN 107 (1323)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~~~~~ 107 (1323)
..|..++|+|..+.||+|+.+|.|.++.++..
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQ 43 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCCc
Confidence 56999999999999999999999999998654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=93.65 E-value=4.5 Score=49.24 Aligned_cols=163 Identities=11% Similarity=-0.008 Sum_probs=88.8
Q ss_pred cHHHHhcCHHHHHHHHHHcCCCcH--H-----HHHHHHHHHhcchHHHHhhc----CCcHHHHHHHHHHHHHHhcccCHH
Q 000736 939 TIDLRLQRFENALKHIVSMGDSYH--A-----DCLNLMKKYAQLFPLGLKLI----TDPAKMEQVLEAWADHLSDVKCFE 1007 (1323)
Q Consensus 939 ~Id~~L~rye~Al~~l~~~g~~~~--~-----~ale~~~~~~~ly~~AL~L~----~d~~~~~~i~~~~A~~L~~~~~~~ 1007 (1323)
.+....|++++|.++|.++.+... . .+-++.... +.|+.|++.+ ........+....++-+...++|+
T Consensus 126 ~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~-g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 126 EAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLAR-NENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHH
Confidence 444566777777777766532111 1 123455666 7777777766 222233455666666677777888
Q ss_pred HHHHHHHhcCCH-----HHHH----HHH-------HHhCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHH
Q 000736 1008 DAATTYFCCSSL-----EKAM----KAY-------RASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAK 1071 (1323)
Q Consensus 1008 eAa~~y~~ag~~-----~kAl----~~y-------~~ag~W~~al~lA~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~ 1071 (1323)
+|..++.+..+. +.+- .+| ....+.+.+..+...++....+..++...+|..+...|++.+|..
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 777666655421 1111 111 112223333333333321001123567778888999999999988
Q ss_pred HHHHhcC--CHHHHHHHHH--HhcCHHHHHHHHHh
Q 000736 1072 IALDYCG--DVTNGISLLI--DARDWEEALRVAFM 1102 (1323)
Q Consensus 1072 i~~~yl~--d~e~Av~~~i--~~~~w~eA~rla~~ 1102 (1323)
+..+-++ .-+..+.+|. ..++.++|+..++.
T Consensus 285 ~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~ 319 (398)
T PRK10747 285 IILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQ 319 (398)
T ss_pred HHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHH
Confidence 8877543 1223333443 45778888777643
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=93.43 E-value=3.4 Score=48.87 Aligned_cols=110 Identities=15% Similarity=0.108 Sum_probs=58.7
Q ss_pred EEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeec-c--------------CCCceeEEEEccCCCe-EEEEe
Q 000736 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-L--------------KAFMGAVLEWMPSGAN-IAAVY 241 (1323)
Q Consensus 178 ~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e-~--------------~~~~v~slawsPdG~l-IAs~s 241 (1323)
+|++.+||.+++ +.-.+......-.|+.++. .|....... | .+.-..+++++|||+. ++...
T Consensus 89 gi~~~~~g~~~i-s~E~~~~~~~~p~I~~~~~-~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 89 GIAVPPDGSFWI-SSEGGRTGGIPPRIRRFDL-DGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred HeEEecCCCEEE-EeCCccCCCCCCEEEEECC-CCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 466677887776 3311100000156777777 576654431 1 2223589999999994 44443
Q ss_pred cCCCCCC-------CCeEEEEe--CC--CeeEEEEEeccC------CCCcEEEEEEccCCCeeEE
Q 000736 242 DRKSENK-------CPSIVFYE--RN--GLERSSFDINEQ------IDSTVELLKWNCMSDLLAA 289 (1323)
Q Consensus 242 ~d~~~~~-------~~~V~~~e--~n--Gl~~~~f~l~~~------~~~~V~~laWSpDg~~LA~ 289 (1323)
.--.++. ...++++. .. |....+|..+.. ....|.++.|=||+++|+.
T Consensus 167 ~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 167 SPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 2101111 11255544 32 333455555532 3457888999999987655
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.42 Score=61.92 Aligned_cols=114 Identities=11% Similarity=-0.026 Sum_probs=74.6
Q ss_pred hhccccHHHHhcCHHHHHHHHHHcC---CCcHHHHHHH---HHHHhcchHHHHhhc-----CCcHHHHHHHHHHHHHHhc
Q 000736 934 LLMRYTIDLRLQRFENALKHIVSMG---DSYHADCLNL---MKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSD 1002 (1323)
Q Consensus 934 ~~~~~~Id~~L~rye~Al~~l~~~g---~~~~~~ale~---~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~ 1002 (1323)
.+.-+.|-..+|||++|+.+|..+= +++...-+++ .++. +-|++|+..+ .+|+ ....+...|.-|..
T Consensus 89 ~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~-~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~ 166 (694)
T PRK15179 89 QVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQ-QGIEAGRAEIELYFSGGSS-SAREILLEAKSWDE 166 (694)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh-ccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHH
Confidence 4555688889999999999998762 4433332333 3677 8899999877 4554 33455566666666
Q ss_pred ccCHHHHHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000736 1003 VKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1323)
Q Consensus 1003 ~~~~~eAa~~y~~ag~~~kAl~~y~~ag~W~~al~lA~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1323)
.|+|++|..+|.++- . ..+-+ .+....+|..|++.|+.++|..+|.+
T Consensus 167 ~g~~~~A~~~y~~~~-------------------~---~~p~~----~~~~~~~a~~l~~~G~~~~A~~~~~~ 213 (694)
T PRK15179 167 IGQSEQADACFERLS-------------------R---QHPEF----ENGYVGWAQSLTRRGALWRARDVLQA 213 (694)
T ss_pred hcchHHHHHHHHHHH-------------------h---cCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666665555432 1 21211 34666778888888888888888776
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.35 E-value=1.1 Score=57.12 Aligned_cols=187 Identities=13% Similarity=0.092 Sum_probs=111.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEE---EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe-ecCceeeeeeecccCCC
Q 000736 86 EKEALIVGTSSGLLLLHSVDGNATE---VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEG 161 (1323)
Q Consensus 86 dg~~La~as~dG~I~lw~~~~~~~e---~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t-~~~d~~~e~~l~~~~~~ 161 (1323)
++..+..|+--..+.-+|+.+.+.. .++ .++|.-|+- +++.|-.|...|+|.+-+ +.+.++.++.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~--a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~------- 214 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVS--ASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFD------- 214 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeecc--CCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeee-------
Confidence 4567777776667777888775432 333 346777776 478999999999998854 3455554444
Q ss_pred ceeccCccccCCCCeEEEEEecCCcEEEEeeccccc--cCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCC-eEE
Q 000736 162 FDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNS--SKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA-NIA 238 (1323)
Q Consensus 162 ~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~--~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~-lIA 238 (1323)
.|.+.+.. |.=.|+.|+|||..... -.-|+=|+|||.+.-+.+.-..-+-++ .-+.|.|.-. .+|
T Consensus 215 ---------aHs~siSD--fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~ 282 (1118)
T KOG1275|consen 215 ---------AHSGSISD--FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLA 282 (1118)
T ss_pred ---------ccccceee--eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEE
Confidence 33344433 45567888877642110 012456999998544333321111222 4567788753 344
Q ss_pred EEecCCCCCCCCeEEEEeCCCeeE---EEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee
Q 000736 239 AVYDRKSENKCPSIVFYERNGLER---SSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1323)
Q Consensus 239 s~s~d~~~~~~~~V~~~e~nGl~~---~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~ 305 (1323)
.++.- ....|-|..++.. +.+-+ .+....+.++.+|++|+.||.+-.++ .|.+|.-.
T Consensus 283 V~S~s------Gq~q~vd~~~lsNP~~~~~~v-~p~~s~i~~fDiSsn~~alafgd~~g---~v~~wa~~ 342 (1118)
T KOG1275|consen 283 VTSQS------GQFQFVDTATLSNPPAGVKMV-NPNGSGISAFDISSNGDALAFGDHEG---HVNLWADR 342 (1118)
T ss_pred EEecc------cceeeccccccCCCccceeEE-ccCCCcceeEEecCCCceEEEecccC---cEeeecCC
Confidence 44432 3456666433221 11111 12234588999999999999999988 89999843
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.12 Score=48.04 Aligned_cols=51 Identities=25% Similarity=0.303 Sum_probs=30.2
Q ss_pred HHHHHhCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000736 1024 KAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1323)
Q Consensus 1024 ~~y~~ag~W~~al~lA~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1323)
.||.+.|+|++|+.+..+.+.++.. .+....+|..+.+.|+|++|..+|.+
T Consensus 33 ~~~~~~~~y~~A~~~~~~~~~~~~~-~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 33 QCYFQQGKYEEAIELLQKLKLDPSN-PDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHTTHHHHHHHHHHCHTHHHCH-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 5666666666666666543322222 23444557777777777777777665
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.20 E-value=2 Score=48.58 Aligned_cols=113 Identities=11% Similarity=0.098 Sum_probs=74.2
Q ss_pred EEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCC--ceeEEEEccCCCeEEEEecC------CC------
Q 000736 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF--MGAVLEWMPSGANIAAVYDR------KS------ 245 (1323)
Q Consensus 180 sWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~--~v~slawsPdG~lIAs~s~d------~~------ 245 (1323)
.|||||.+|- .. ....+.+.+.|-|||. +-.+..+.|-... --+.+.|.+||++++.+... -.
T Consensus 120 vfs~dG~~LY-AT-Endfd~~rGViGvYd~-r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNl 196 (366)
T COG3490 120 VFSPDGRLLY-AT-ENDFDPNRGVIGVYDA-REGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNL 196 (366)
T ss_pred ccCCCCcEEE-ee-cCCCCCCCceEEEEec-ccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccch
Confidence 4899999885 22 2112356789999999 4555555542221 12789999999999877431 00
Q ss_pred CCCCCeEEEEe-CCCeeEEEEEecc-CCCCcEEEEEEccCCCeeEEEEccCC
Q 000736 246 ENKCPSIVFYE-RNGLERSSFDINE-QIDSTVELLKWNCMSDLLAAVVRFEE 295 (1323)
Q Consensus 246 ~~~~~~V~~~e-~nGl~~~~f~l~~-~~~~~V~~laWSpDg~~LA~~~~d~~ 295 (1323)
..-...+++.+ ..|....+.+|+. ....+|..++..+||++++.+-..++
T Consensus 197 dsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~ 248 (366)
T COG3490 197 DSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGP 248 (366)
T ss_pred hhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCC
Confidence 11245677777 6776655555651 12457999999999999988766553
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=93.20 E-value=2 Score=51.65 Aligned_cols=153 Identities=15% Similarity=0.099 Sum_probs=79.0
Q ss_pred CCEEEEEEecCCCEEEEEe-----------CCC-cEEEEeCC-C-Ce---EEEeceecCcEEEEEEcCCCCeEEEEeCCc
Q 000736 76 DSITAFDYLMEKEALIVGT-----------SSG-LLLLHSVD-G-NA---TEVVGRVEGGVRFISPSPDGDLLGVTTGFG 138 (1323)
Q Consensus 76 ~~V~~v~~spdg~~La~as-----------~dG-~I~lw~~~-~-~~---~e~vg~~~~~I~~~awSPDG~~LA~~s~d~ 138 (1323)
..++.|+|.++|+.+++-. ..| .|.+++-. + ++ .+.+..--.....++|.||| ++++ +. .
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~-~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TP-P 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CC-C
Confidence 4789999999999877642 234 67777542 2 22 23332212346889999999 5443 33 3
Q ss_pred cEEEE-eecCceee----eeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeecccc----------c--cCCC
Q 000736 139 QILVM-THDWDLLY----ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCN----------S--SKLH 201 (1323)
Q Consensus 139 tV~l~-t~~~d~~~----e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~----------~--~~~d 201 (1323)
.|..+ +.+.+-.. +.-+.... ..-..+......+.|.|||.+.++.++... . ....
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~-------~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~ 163 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFG-------GQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLG 163 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccC-------CCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccC
Confidence 45433 33332111 11111000 000001233568999999997664553210 0 0011
Q ss_pred CEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEE
Q 000736 202 KRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAA 239 (1323)
Q Consensus 202 ~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs 239 (1323)
+.|.-++++++++.....+... ...++|+|+|+++++
T Consensus 164 g~i~r~~pdg~~~e~~a~G~rn-p~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 164 GGLFRYNPDGGKLRVVAHGFQN-PYGHSVDSWGDVFFC 200 (367)
T ss_pred ceEEEEecCCCeEEEEecCcCC-CccceECCCCCEEEE
Confidence 3455567744444333333322 267888888888765
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.56 Score=55.42 Aligned_cols=188 Identities=14% Similarity=0.088 Sum_probs=115.1
Q ss_pred CCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEE
Q 000736 127 DGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKV 206 (1323)
Q Consensus 127 DG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrV 206 (1323)
--+.+.+|+-||.++.|-+..-...+.- ..|+.|-..+.+++-+-||..+.|++ ..|..+|+
T Consensus 19 ka~fiiqASlDGh~KFWkKs~isGvEfV------------KhFraHL~~I~sl~~S~dg~L~~Sv~------d~Dhs~Kv 80 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRISGVEFV------------KHFRAHLGVILSLAVSYDGWLFRSVE------DPDHSVKV 80 (558)
T ss_pred hhheEEeeecchhhhhcCCCCccceeeh------------hhhHHHHHHHHhhhccccceeEeecc------CcccceeE
Confidence 3478999999999998865321122222 12445556677888899999988444 23578999
Q ss_pred EECCCCceeeeeccCCCceeEEEEccCCC----eEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEcc
Q 000736 207 WERDSGTLQASSELKAFMGAVLEWMPSGA----NIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNC 282 (1323)
Q Consensus 207 Wd~~~G~l~~t~e~~~~~v~slawsPdG~----lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSp 282 (1323)
+|.++-....... ...+-..+.|--+-. +||.+..+ ...|-++|.-|......-..+-+...|..+..+|
T Consensus 81 fDvEn~DminmiK-L~~lPg~a~wv~skGd~~s~IAVs~~~-----sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q 154 (558)
T KOG0882|consen 81 FDVENFDMINMIK-LVDLPGFAEWVTSKGDKISLIAVSLFK-----SGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ 154 (558)
T ss_pred EEeeccchhhhcc-cccCCCceEEecCCCCeeeeEEeeccc-----CCCcEEECCcCCcCccceecccccCceEEEEeec
Confidence 9985544433221 112223445533332 67777665 3567788864432111011122456899999999
Q ss_pred CCCeeEEEEccCCCCeEEEEEee--------CCeeEEEeEEE---Eec--CCcEEEEEccCCCcEEEEEecCC
Q 000736 283 MSDLLAAVVRFEEYDSVKICFFS--------NNHWYLKYEIR---YLR--RDGIRFMWHPTKPLQLICWTLDG 342 (1323)
Q Consensus 283 Dg~~LA~~~~d~~~~~V~LW~~~--------n~~wylkq~l~---~~~--~~~~~v~Wsp~~~~~L~~~~~~g 342 (1323)
-|....+....+ .|.-|+.. +.+|-+|.+-. +.. ..+.++.++|++.. +.....+-
T Consensus 155 a~Ds~vSiD~~g---mVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~q-istl~~Dr 223 (558)
T KOG0882|consen 155 AGDSAVSIDISG---MVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQ-ISTLNPDR 223 (558)
T ss_pred cccceeeccccc---eeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCc-ccccCccc
Confidence 999888877666 89999976 35666665421 222 12388999999865 44444443
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=93.02 E-value=2.3 Score=50.49 Aligned_cols=58 Identities=24% Similarity=0.289 Sum_probs=39.7
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe---EEEe----ceecCcEEEEEEcCC----CCeEEEEe
Q 000736 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNA---TEVV----GRVEGGVRFISPSPD----GDLLGVTT 135 (1323)
Q Consensus 77 ~V~~v~~spdg~~La~as~dG~I~lw~~~~~~---~e~v----g~~~~~I~~~awSPD----G~~LA~~s 135 (1323)
.+++|+|.|||+.+++ ...|+|.+++.++.. +..+ ..-+.+...+++.|+ +.+.++-+
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t 71 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYT 71 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEE
Confidence 5799999999988765 569999999955532 2111 223568999999996 55555555
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=92.99 E-value=2.4 Score=47.16 Aligned_cols=22 Identities=9% Similarity=-0.216 Sum_probs=12.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHh
Q 000736 1055 ELCEELQALGKPGEAAKIALDY 1076 (1323)
Q Consensus 1055 ~la~~L~~~~~~~eAa~i~~~y 1076 (1323)
.+|..+...|++.+|...|.+.
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~a 192 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETV 192 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHH
Confidence 3455555556666666555553
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=92.98 E-value=2.1 Score=56.64 Aligned_cols=186 Identities=15% Similarity=0.082 Sum_probs=111.1
Q ss_pred CCcccchHhHHHHhcCCchhccc-----cHHHHhcCHHHHHHHHHHcCCC----cHHHH--HHHHHHHhcchHHHHhhc-
Q 000736 916 RDPKEFLPYLQELESMPPLLMRY-----TIDLRLQRFENALKHIVSMGDS----YHADC--LNLMKKYAQLFPLGLKLI- 983 (1323)
Q Consensus 916 kDPkeYLpfL~~L~~l~~~~~~~-----~Id~~L~rye~Al~~l~~~g~~----~~~~a--le~~~~~~~ly~~AL~L~- 983 (1323)
.|..+-+..|+++-+..++-... .+...+|++++|+.++.++-+. ..... -...... +.|++|+++|
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~-gdyd~Aiely~ 126 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNE-KRWDQALALWQ 126 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 44444455555555554433222 5556779999999999998531 11222 1255677 8899999998
Q ss_pred ----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhcCCHHHH-----HHHHHH--hCCHHHHHHHHhhc-CCCHHHHHH
Q 000736 984 ----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKA-----MKAYRA--SGNWSGVLTVAGLL-KLGKDEVAK 1051 (1323)
Q Consensus 984 ----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kA-----l~~y~~--ag~W~~al~lA~~l-~~~~~~~~~ 1051 (1323)
.+|.. ..++...|.-+.+.+++++|...+.++-..... ...|.. .++..+|+...+++ ...|++ .+
T Consensus 127 kaL~~dP~n-~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n-~e 204 (822)
T PRK14574 127 SSLKKDPTN-PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTS-EE 204 (822)
T ss_pred HHHhhCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCC-HH
Confidence 45555 445555577778889999999988887432211 123333 23333355444432 222222 35
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcC
Q 000736 1052 LAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHR 1104 (1323)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~yl~d~e~Av~~~i~~~~w~eA~rla~~~~ 1104 (1323)
++.++...|...|-..-|.++..+|=+-+...-..-++...-.+-+|.+....
T Consensus 205 ~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~ 257 (822)
T PRK14574 205 VLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPT 257 (822)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhccccc
Confidence 77788888888888888888877754434444444455555556666664333
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.88 E-value=8.5 Score=44.09 Aligned_cols=166 Identities=15% Similarity=0.121 Sum_probs=99.7
Q ss_pred ceeEEeeecCCCEEEEEeCCC-cEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEE
Q 000736 22 ILQFSALDIEQNRLFFASSAN-NIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~-~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~ 100 (1323)
.+.+++|++++++||+..+.. .|++.+. .++. +.++| +.++ .-.-+|+|.-+|++.++-=.++++.
T Consensus 87 nvS~LTynp~~rtLFav~n~p~~iVElt~---~Gdl---irtiP--L~g~-----~DpE~Ieyig~n~fvi~dER~~~l~ 153 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNKPAAIVELTK---EGDL---IRTIP--LTGF-----SDPETIEYIGGNQFVIVDERDRALY 153 (316)
T ss_pred cccceeeCCCcceEEEecCCCceEEEEec---CCce---EEEec--cccc-----CChhHeEEecCCEEEEEehhcceEE
Confidence 688899999999999997744 6777776 5554 44444 2221 3356788999888877766777777
Q ss_pred EEeCC--CCeE-----E-Eec---eecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCce-eeeeeecccC-CC--ceec
Q 000736 101 LHSVD--GNAT-----E-VVG---RVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDL-LYENPLEELA-EG--FDVH 165 (1323)
Q Consensus 101 lw~~~--~~~~-----e-~vg---~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~-~~e~~l~~~~-~~--~~Vs 165 (1323)
+..++ +..+ + .+| +-..|...+||+|+++.|-.+-+-+-+.+......+ .-........ .. -++
T Consensus 154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~- 232 (316)
T COG3204 154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFV- 232 (316)
T ss_pred EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEe-
Confidence 76554 3211 1 112 115678899999999999999887777664322111 0001111010 00 111
Q ss_pred cCccccCCCCeEEEEEecC-CcEEEEeeccccccCCCCEEEEEECCCCceeee
Q 000736 166 EPELSSSFSFKSPISWRGD-GKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS 217 (1323)
Q Consensus 166 ~tqf~~~~~~i~~isWspD-G~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t 217 (1323)
..+.++.|.+. |..++ .| .+.+.+.--|+ +|.....
T Consensus 233 --------~DvSgl~~~~~~~~LLV-LS------~ESr~l~Evd~-~G~~~~~ 269 (316)
T COG3204 233 --------LDVSGLEFNAITNSLLV-LS------DESRRLLEVDL-SGEVIEL 269 (316)
T ss_pred --------eccccceecCCCCcEEE-Ee------cCCceEEEEec-CCCeeee
Confidence 23466777754 44555 55 24577777788 7775443
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.12 Score=65.26 Aligned_cols=69 Identities=16% Similarity=0.209 Sum_probs=48.5
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEeceecCcE-----------EEEEEcCCCCeEEEEeCCccEEEEe
Q 000736 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGV-----------RFISPSPDGDLLGVTTGFGQILVMT 144 (1323)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I-----------~~~awSPDG~~LA~~s~d~tV~l~t 144 (1323)
+.|....|-+..-.+|.+-.+|+|.|.+.+.....++-+|..++ .-...||||+.+|.+..||.+..|.
T Consensus 184 ~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 184 QLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQ 263 (1283)
T ss_pred ceeeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceee
Confidence 45666666778899999999999999666542222111133333 3344799999999999999998774
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.45 Score=54.60 Aligned_cols=129 Identities=11% Similarity=0.090 Sum_probs=81.1
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCC-----eEEEeceecCcEEEEEEcC-CCCeEEEEeCCccEEEEeecC
Q 000736 74 PGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGN-----ATEVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILVMTHDW 147 (1323)
Q Consensus 74 ~~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~-----~~e~vg~~~~~I~~~awSP-DG~~LA~~s~d~tV~l~t~~~ 147 (1323)
..+-|.+.+|.-.+..+..|-.+|.|..+|+..+ .....=.|+..|+++..=- +++.|...+-+|+|++|+.-.
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~ 330 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA 330 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence 3466889999998999999999999999998652 1223334688899887765 678888888999999986321
Q ss_pred ceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeec
Q 000736 148 DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE 219 (1323)
Q Consensus 148 d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e 219 (1323)
.. ....+.+.. +||++.. -.-+--.+.-.+++++ +.|.-.|||....|.++.+..
T Consensus 331 ~K-~~~~V~qYe--GHvN~~a-------~l~~~v~~eeg~I~s~-------GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 331 TK-CKKSVMQYE--GHVNLSA-------YLPAHVKEEEGSIFSV-------GDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred hh-cccceeeee--ccccccc-------ccccccccccceEEEc-------cCeeEEEEEecccCceeeccC
Confidence 10 111111111 2221000 0011112222234413 357899999998999988754
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=92.81 E-value=1.2 Score=58.02 Aligned_cols=124 Identities=10% Similarity=0.012 Sum_probs=70.7
Q ss_pred eEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEE
Q 000736 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1323)
Q Consensus 176 i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~ 255 (1323)
+..+.|||||++|| .+. |..+++..+|+|-|..+|..+.. ...+....++|+|||+.|.-+..+........|..+
T Consensus 129 l~~~~~Spdg~~la-~~~-d~~G~E~~~l~v~d~~tg~~l~~--~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 129 LGGMAITPDNTIMA-LAE-DFLSRRQYGIRFRNLETGNWYPE--LLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EeEEEECCCCCEEE-EEe-cCCCcEEEEEEEEECCCCCCCCc--cccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 46789999999999 553 32224446788999988864332 222223569999999987766554321123567667
Q ss_pred eCCCe-eEEEEEeccCCCCcEEEEEEcc-CCCeeEEEEccCCCCeEEEEEe
Q 000736 256 ERNGL-ERSSFDINEQIDSTVELLKWNC-MSDLLAAVVRFEEYDSVKICFF 304 (1323)
Q Consensus 256 e~nGl-~~~~f~l~~~~~~~V~~laWSp-Dg~~LA~~~~d~~~~~V~LW~~ 304 (1323)
+.... .......... .....-..|.+ |++.+.+.+.....+.+.+|+.
T Consensus 205 ~lgt~~~~d~lv~~e~-~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 205 TIGTPASQDELVYEEK-DDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred ECCCChhHCeEEEeeC-CCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 65322 1111122221 11222233444 8888777666654445777773
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.99 Score=50.86 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=38.0
Q ss_pred EEecCCCEEEEE-----eCCCcEEEEeCCCCeEEEec---eecCcEEEEEEcCCCCeEEEEeC
Q 000736 82 DYLMEKEALIVG-----TSSGLLLLHSVDGNATEVVG---RVEGGVRFISPSPDGDLLGVTTG 136 (1323)
Q Consensus 82 ~~spdg~~La~a-----s~dG~I~lw~~~~~~~e~vg---~~~~~I~~~awSPDG~~LA~~s~ 136 (1323)
.|||||+.|... ..-|.|-+||... ...-+| .|.-|-..+.|.+||++|+++.+
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~-~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDARE-GFQRVGEFSTHGIGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEeccc-ccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence 389999998754 2346688999874 222222 23345667899999999999976
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=92.60 E-value=2 Score=57.92 Aligned_cols=25 Identities=8% Similarity=0.102 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH
Q 000736 1051 KLAQELCEELQALGKPGEAAKIALD 1075 (1323)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1323)
.+...+++.+.+.|++.+|.+++.+
T Consensus 248 ~l~~ala~~yi~~G~~~~A~~~L~~ 272 (987)
T PRK09782 248 QSRITYATALAYRGEKARLQHYLIE 272 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3455566666666666666666555
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=92.58 E-value=23 Score=40.46 Aligned_cols=185 Identities=11% Similarity=0.091 Sum_probs=105.7
Q ss_pred ceeEEeeecCCCEEEEEeC---CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCc
Q 000736 22 ILQFSALDIEQNRLFFASS---ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGL 98 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~---~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~ 98 (1323)
--+++.++. ++.||-.+. .+.|..+|+ .+++... ...||..+.+. .|+- . +++..-....+|.
T Consensus 46 FTQGL~~~~-~g~LyESTG~yG~S~l~~~d~--~tg~~~~-~~~l~~~~FgE------Git~---~-~d~l~qLTWk~~~ 111 (264)
T PF05096_consen 46 FTQGLEFLD-DGTLYESTGLYGQSSLRKVDL--ETGKVLQ-SVPLPPRYFGE------GITI---L-GDKLYQLTWKEGT 111 (264)
T ss_dssp EEEEEEEEE-TTEEEEEECSTTEEEEEEEET--TTSSEEE-EEE-TTT--EE------EEEE---E-TTEEEEEESSSSE
T ss_pred cCccEEecC-CCEEEEeCCCCCcEEEEEEEC--CCCcEEE-EEECCccccce------eEEE---E-CCEEEEEEecCCe
Confidence 345566754 455666654 346999999 6776522 33444443222 2222 2 3456667889999
Q ss_pred EEEEeCCCCeE-EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe-ecCceeeeeeecccCCCceeccCccccCCCCe
Q 000736 99 LLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1323)
Q Consensus 99 I~lw~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i 176 (1323)
..+||.++-+. ..+. .++.=+.++ .||+.|....+..+|.+++ .+|+....+.... .+.+| ..+
T Consensus 112 ~f~yd~~tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~--~g~pv---------~~L 177 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD--NGRPV---------SNL 177 (264)
T ss_dssp EEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE--TTEE------------E
T ss_pred EEEEccccceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEE--CCEEC---------CCc
Confidence 99999987432 2222 233334444 6899999998888998887 5677766665543 33444 244
Q ss_pred EEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeec---------------cCCCceeEEEEccCCCeEEEEe
Q 000736 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE---------------LKAFMGAVLEWMPSGANIAAVY 241 (1323)
Q Consensus 177 ~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e---------------~~~~~v~slawsPdG~lIAs~s 241 (1323)
.-+-|- ||...| =-.. ...|-+.|+++|+...... +...--+.|||.|.++.+-.++
T Consensus 178 NELE~i-~G~IyA-NVW~------td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 178 NELEYI-NGKIYA-NVWQ------TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEE-TTEEEE-EETT------SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EeEEEE-cCEEEE-EeCC------CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 556665 788877 3232 1345556888888766421 0123358999999988776666
Q ss_pred c
Q 000736 242 D 242 (1323)
Q Consensus 242 ~ 242 (1323)
.
T Consensus 250 K 250 (264)
T PF05096_consen 250 K 250 (264)
T ss_dssp T
T ss_pred C
Confidence 4
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=92.57 E-value=6 Score=48.72 Aligned_cols=53 Identities=13% Similarity=0.166 Sum_probs=38.8
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEE-------Ee-ceecCcEEEEEEcCCC
Q 000736 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-------VV-GRVEGGVRFISPSPDG 128 (1323)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e-------~v-g~~~~~I~~~awSPDG 128 (1323)
+..++|+|.|||+.|++--..|.|++++..++... .+ ..-+++...++++||-
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 46899999999987766544699999987653221 11 1126889999999995
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=92.55 E-value=31 Score=41.99 Aligned_cols=218 Identities=16% Similarity=0.181 Sum_probs=113.4
Q ss_pred eeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEE
Q 000736 23 LQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLH 102 (1323)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw 102 (1323)
..+++++ ++..+++.+.+.|+.-.- .++ .|.....+ +..|. ....+....++... +++..|.|..-
T Consensus 139 l~~v~f~--~~~g~~vG~~G~il~T~D---gG~-tW~~~~~~------~~~p~-~~~~i~~~~~~~~~-ivg~~G~v~~S 204 (398)
T PLN00033 139 FNSISFK--GKEGWIIGKPAILLHTSD---GGE-TWERIPLS------PKLPG-EPVLIKATGPKSAE-MVTDEGAIYVT 204 (398)
T ss_pred eeeeEEE--CCEEEEEcCceEEEEEcC---CCC-CceECccc------cCCCC-CceEEEEECCCceE-EEeccceEEEE
Confidence 3455554 466888887775554332 233 25432111 11122 22344444444433 34477886553
Q ss_pred eCCCCeEEEe--------------------ceecCcEEEEEEcCCCCeEEEEeCCccEEE-Eee---cCceeeeeeeccc
Q 000736 103 SVDGNATEVV--------------------GRVEGGVRFISPSPDGDLLGVTTGFGQILV-MTH---DWDLLYENPLEEL 158 (1323)
Q Consensus 103 ~~~~~~~e~v--------------------g~~~~~I~~~awSPDG~~LA~~s~d~tV~l-~t~---~~d~~~e~~l~~~ 158 (1323)
+-.+...+.+ .-..+....+.-+|||.+++++.. |.+.. |+. .|.++. ..
T Consensus 205 ~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~-G~~~~s~d~G~~~W~~~~---~~-- 278 (398)
T PLN00033 205 SNAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSR-GNFYLTWEPGQPYWQPHN---RA-- 278 (398)
T ss_pred CCCCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECC-ccEEEecCCCCcceEEec---CC--
Confidence 3222223211 011234556678899987776654 44432 221 133221 11
Q ss_pred CCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceee--eec----c-CCCceeEEEEc
Q 000736 159 AEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA--SSE----L-KAFMGAVLEWM 231 (1323)
Q Consensus 159 ~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~--t~e----~-~~~~v~slaws 231 (1323)
....+..+.|++||..+. ++. .+.+ +|....|+.-. .+. + ....+.++.|.
T Consensus 279 -------------~~~~l~~v~~~~dg~l~l-~g~-------~G~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~ 336 (398)
T PLN00033 279 -------------SARRIQNMGWRADGGLWL-LTR-------GGGL-YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYR 336 (398)
T ss_pred -------------CccceeeeeEcCCCCEEE-EeC-------CceE-EEecCCCCcccccceeecccCCCCcceEEEEEc
Confidence 123568899999999887 542 2343 45665664221 111 1 11236889999
Q ss_pred cCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEe-c--cCCCCcEEEEEEccCCCeeEEEEc
Q 000736 232 PSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDI-N--EQIDSTVELLKWNCMSDLLAAVVR 292 (1323)
Q Consensus 232 PdG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l-~--~~~~~~V~~laWSpDg~~LA~~~~ 292 (1323)
+++..+++|... +++...+|-.+ |.. + ..-....+.+.|.++++..+++..
T Consensus 337 ~d~~~~a~G~~G--------~v~~s~D~G~t--W~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~ 390 (398)
T PLN00033 337 SKKEAWAAGGSG--------ILLRSTDGGKS--WKRDKGADNIAANLYSVKFFDDKKGFVLGND 390 (398)
T ss_pred CCCcEEEEECCC--------cEEEeCCCCcc--eeEccccCCCCcceeEEEEcCCCceEEEeCC
Confidence 999999988652 33444433222 211 1 111345889999998888887643
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.37 E-value=24 Score=41.89 Aligned_cols=164 Identities=16% Similarity=0.188 Sum_probs=88.6
Q ss_pred EEeCCCcEEEEeCCC-CeEEEe-ceecCcEEEEEEcCCCCeEEEEeCCccEEEEe----ecCceeeeeeecccCCCceec
Q 000736 92 VGTSSGLLLLHSVDG-NATEVV-GRVEGGVRFISPSPDGDLLGVTTGFGQILVMT----HDWDLLYENPLEELAEGFDVH 165 (1323)
Q Consensus 92 ~as~dG~I~lw~~~~-~~~e~v-g~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t----~~~d~~~e~~l~~~~~~~~Vs 165 (1323)
+++..|.|.. ..++ ...+.+ ....+.+.++.++|||.++++ +..|.+..-. +.|..+..
T Consensus 147 ~~g~~G~i~~-S~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~-g~~G~i~~s~~~gg~tW~~~~~------------- 211 (334)
T PRK13684 147 MATNVGAIYR-TTDGGKNWEALVEDAAGVVRNLRRSPDGKYVAV-SSRGNFYSTWEPGQTAWTPHQR------------- 211 (334)
T ss_pred eeeccceEEE-ECCCCCCceeCcCCCcceEEEEEECCCCeEEEE-eCCceEEEEcCCCCCeEEEeeC-------------
Confidence 4455666543 3333 344422 222467899999999876644 4556654321 12333211
Q ss_pred cCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeee-ecc---CCCceeEEEEccCCCeEEEEe
Q 000736 166 EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS-SEL---KAFMGAVLEWMPSGANIAAVY 241 (1323)
Q Consensus 166 ~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t-~e~---~~~~v~slawsPdG~lIAs~s 241 (1323)
+....+..+.+.++|+.++ ++. .+.+++=+.+.|..-.. ..+ ....+.+++|+|+|..++++.
T Consensus 212 -----~~~~~l~~i~~~~~g~~~~-vg~-------~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~ 278 (334)
T PRK13684 212 -----NSSRRLQSMGFQPDGNLWM-LAR-------GGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGG 278 (334)
T ss_pred -----CCcccceeeeEcCCCCEEE-Eec-------CCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcC
Confidence 1113568899999999877 653 25554323445543221 111 112357899999999888775
Q ss_pred cCCCCCCCCeEEEEeCCCeeEEEEEec--cCCCCcEEEEEEccCCCeeEEEEc
Q 000736 242 DRKSENKCPSIVFYERNGLERSSFDIN--EQIDSTVELLKWNCMSDLLAAVVR 292 (1323)
Q Consensus 242 ~d~~~~~~~~V~~~e~nGl~~~~f~l~--~~~~~~V~~laWSpDg~~LA~~~~ 292 (1323)
. ..++...+|-.+-+ .++ .......+.+.|-.+++.+|++..
T Consensus 279 ~--------G~v~~S~d~G~tW~-~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 279 N--------GTLLVSKDGGKTWE-KDPVGEEVPSNFYKIVFLDPEKGFVLGQR 322 (334)
T ss_pred C--------CeEEEeCCCCCCCe-ECCcCCCCCcceEEEEEeCCCceEEECCC
Confidence 4 24455555422211 111 111234777888888888777643
|
|
| >KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.33 E-value=1.1 Score=57.46 Aligned_cols=112 Identities=20% Similarity=0.225 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCh
Q 000736 987 AKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKP 1066 (1323)
Q Consensus 987 ~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~ag~W~~al~lA~~l~~~~~~~~~l~~~la~~L~~~~~~ 1066 (1323)
+..+.+...-|+.+.+.|.|++|+++|..||+|++|++...++- .+++..-..-...++.+..++..+++.+...+-+
T Consensus 619 ~~~~~i~~~vA~~a~~~G~~~~sI~LY~lag~yd~al~link~L--S~~l~~~~~~~~n~erl~~La~~~~~~y~~~~~~ 696 (835)
T KOG2168|consen 619 EDLQKIILEVASEADEDGLFEDAILLYHLAGDYDKALELINKLL--SQVLHSPTLGQSNKERLGDLALSMNDIYESNKGD 696 (835)
T ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhhHHHHHHHHHH--HHHHhhcccCCcchhhHHHHHHHHHHHHHhccCc
Confidence 45778888999999999999999999999999999998776543 2333211111224567788999999999876544
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHhcCHHHHHHHHHh
Q 000736 1067 GEAAKIALD--YCGDVTNGISLLIDARDWEEALRVAFM 1102 (1323)
Q Consensus 1067 ~eAa~i~~~--yl~d~e~Av~~~i~~~~w~eA~rla~~ 1102 (1323)
.+- ..+.. -+-|+-.+-+.|- .++|++|+++.+.
T Consensus 697 ~~~-~~~~t~~lLl~~~~~f~~y~-~~~~e~aL~~le~ 732 (835)
T KOG2168|consen 697 SAK-VVVKTLSLLLDLVSFFDLYH-NGEWEEALSILEH 732 (835)
T ss_pred chh-hHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHH
Confidence 332 11111 1345556666554 4579999988765
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=92.21 E-value=29 Score=43.68 Aligned_cols=84 Identities=24% Similarity=0.210 Sum_probs=56.4
Q ss_pred HHHHHhcCCHHHHHHHHHHhCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCC--------HH
Q 000736 1010 ATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGD--------VT 1081 (1323)
Q Consensus 1010 a~~y~~ag~~~kAl~~y~~ag~W~~al~lA~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d--------~e 1081 (1323)
+.+|.+.|++++|++.. ++|+. .+|.- .+++..-|..|...|++.+|++.+.. +.. -.
T Consensus 201 Aqhyd~~g~~~~Al~~I------d~aI~------htPt~-~ely~~KarilKh~G~~~~Aa~~~~~-Ar~LD~~DRyiNs 266 (517)
T PF12569_consen 201 AQHYDYLGDYEKALEYI------DKAIE------HTPTL-VELYMTKARILKHAGDLKEAAEAMDE-ARELDLADRYINS 266 (517)
T ss_pred HHHHHHhCCHHHHHHHH------HHHHh------cCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHH-HHhCChhhHHHHH
Confidence 44455555555555543 22222 23333 36888888889999999998888655 432 34
Q ss_pred HHHHHHHHhcCHHHHHHHHHhcCCch
Q 000736 1082 NGISLLIDARDWEEALRVAFMHRRED 1107 (1323)
Q Consensus 1082 ~Av~~~i~~~~w~eA~rla~~~~~~d 1107 (1323)
.++..+.++++.++|..++....+.+
T Consensus 267 K~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 267 KCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 67888889999999988888877654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.10 E-value=1.7 Score=56.55 Aligned_cols=99 Identities=15% Similarity=0.096 Sum_probs=63.2
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEE
Q 000736 233 SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLK 312 (1323)
Q Consensus 233 dG~lIAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylk 312 (1323)
.+..||.|++. ..|..++.+|... .+.-.....+.|.+++||-||++|+.|..+| .|.+||+.+..-+
T Consensus 98 ~~~~ivi~Ts~------ghvl~~d~~~nL~-~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G---~V~v~D~~~~k~l-- 165 (1206)
T KOG2079|consen 98 VVVPIVIGTSH------GHVLLSDMTGNLG-PLHQNERVQGPVTSVAFNQDGSLLLAGLGDG---HVTVWDMHRAKIL-- 165 (1206)
T ss_pred eeeeEEEEcCc------hhhhhhhhhcccc-hhhcCCccCCcceeeEecCCCceeccccCCC---cEEEEEccCCcce--
Confidence 34567777764 3476777666321 1101122356899999999999999999998 8999999885432
Q ss_pred eEEEEec--CCc-EEEEEccCCCcEEEEEecCCcE
Q 000736 313 YEIRYLR--RDG-IRFMWHPTKPLQLICWTLDGQI 344 (1323)
Q Consensus 313 q~l~~~~--~~~-~~v~Wsp~~~~~L~~~~~~g~~ 344 (1323)
+.+..+. ..+ ..+.|..++. .+......|.+
T Consensus 166 ~~i~e~~ap~t~vi~v~~t~~nS-~llt~D~~Gsf 199 (1206)
T KOG2079|consen 166 KVITEHGAPVTGVIFVGRTSQNS-KLLTSDTGGSF 199 (1206)
T ss_pred eeeeecCCccceEEEEEEeCCCc-EEEEccCCCce
Confidence 3444433 223 5677777666 34455545543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=92.03 E-value=1.9 Score=46.48 Aligned_cols=111 Identities=11% Similarity=-0.064 Sum_probs=61.0
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHhcCCH----H----HHHHHHHHhCCHHHHHHHHhhcC-C-CHHHHHHHHHHHHHHHH
Q 000736 992 VLEAWADHLSDVKCFEDAATTYFCCSSL----E----KAMKAYRASGNWSGVLTVAGLLK-L-GKDEVAKLAQELCEELQ 1061 (1323)
Q Consensus 992 i~~~~A~~L~~~~~~~eAa~~y~~ag~~----~----kAl~~y~~ag~W~~al~lA~~l~-~-~~~~~~~l~~~la~~L~ 1061 (1323)
.+...|..+...+++++|..+|.++-+. . ....+|...|++++|+....+.- . ...........++..+.
T Consensus 67 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (234)
T TIGR02521 67 AYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCAL 146 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence 3334455555555666655555544211 1 11234445555555544443320 0 00111345666788888
Q ss_pred HcCChHHHHHHHHHhcC----C---HHHHHHHHHHhcCHHHHHHHHHh
Q 000736 1062 ALGKPGEAAKIALDYCG----D---VTNGISLLIDARDWEEALRVAFM 1102 (1323)
Q Consensus 1062 ~~~~~~eAa~i~~~yl~----d---~e~Av~~~i~~~~w~eA~rla~~ 1102 (1323)
..|++.+|...|.+.+. + ...-..+|...++|++|+....+
T Consensus 147 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 194 (234)
T TIGR02521 147 KAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLER 194 (234)
T ss_pred HcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999998877432 1 12333567778888888776554
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=91.93 E-value=36 Score=41.26 Aligned_cols=64 Identities=17% Similarity=0.265 Sum_probs=42.2
Q ss_pred CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeE
Q 000736 31 EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT 109 (1323)
Q Consensus 31 ~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~ 109 (1323)
+++.||+++.++.++.+|. .+++..|+.. ++..+. ...+. .+..+.+++.+|.|.-+|..+++.
T Consensus 119 ~~~~v~v~~~~g~l~ald~--~tG~~~W~~~-~~~~~~------ssP~v------~~~~v~v~~~~g~l~ald~~tG~~ 182 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNA--EDGEVAWQTK-VAGEAL------SRPVV------SDGLVLVHTSNGMLQALNESDGAV 182 (394)
T ss_pred ECCEEEEEcCCCEEEEEEC--CCCCCccccc-CCCcee------cCCEE------ECCEEEEECCCCEEEEEEccCCCE
Confidence 4678999988889999999 7888888754 111111 01111 134566677788888888877654
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.98 Score=53.32 Aligned_cols=152 Identities=20% Similarity=0.185 Sum_probs=76.1
Q ss_pred hhccccHHHHhcCHHHHHHHHHHc---C------------CCcHHHHHHHHHHHhcchHHHHhhcCCcHHHHHHHHHHHH
Q 000736 934 LLMRYTIDLRLQRFENALKHIVSM---G------------DSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWAD 998 (1323)
Q Consensus 934 ~~~~~~Id~~L~rye~Al~~l~~~---g------------~~~~~~ale~~~~~~~ly~~AL~L~~d~~~~~~i~~~~A~ 998 (1323)
.+-+.+.-+++|+|++|++.-+.. . --++....++...| |.+||.|-.|..+.+..+. ..+
T Consensus 172 ~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~h---f~qal~ldpdh~~sk~~~~-~~k 247 (486)
T KOG0550|consen 172 KLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINH---FQQALRLDPDHQKSKSASM-MPK 247 (486)
T ss_pred HHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHH---HhhhhccChhhhhHHhHhh-hHH
Confidence 345667888999999988743321 1 12234445566666 8999987633222222221 111
Q ss_pred HHhcccCHHHHHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHH-------HHH
Q 000736 999 HLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGE-------AAK 1071 (1323)
Q Consensus 999 ~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~ag~W~~al~lA~~l~~~~~~~~~l~~~la~~L~~~~~~~e-------Aa~ 1071 (1323)
-|+ .+.+-+..--+-|++.+|-+||.++-+.+ +-..+-...++-..|......|+..| |+.
T Consensus 248 ~le---~~k~~gN~~fk~G~y~~A~E~Yteal~id---------P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~ 315 (486)
T KOG0550|consen 248 KLE---VKKERGNDAFKNGNYRKAYECYTEALNID---------PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK 315 (486)
T ss_pred HHH---HHHhhhhhHhhccchhHHHHHHHHhhcCC---------ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh
Confidence 111 12223333334455556666664443211 00111112344444444444444444 344
Q ss_pred HHHHhcCCHHHHHHHHHHhcCHHHHHHHHH
Q 000736 1072 IALDYCGDVTNGISLLIDARDWEEALRVAF 1101 (1323)
Q Consensus 1072 i~~~yl~d~e~Av~~~i~~~~w~eA~rla~ 1101 (1323)
|=-.|+.-+-.+..||...+.|++|++=..
T Consensus 316 iD~syikall~ra~c~l~le~~e~AV~d~~ 345 (486)
T KOG0550|consen 316 IDSSYIKALLRRANCHLALEKWEEAVEDYE 345 (486)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666777777778888876443
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=91.85 E-value=3.8 Score=40.40 Aligned_cols=96 Identities=17% Similarity=0.076 Sum_probs=63.1
Q ss_pred EeeecCC-CEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeC
Q 000736 26 SALDIEQ-NRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSV 104 (1323)
Q Consensus 26 ~~~d~~~-~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~ 104 (1323)
+.||-|+ +.|.++|+|.-|..++-. +. +.. +.+ .+.|+++..+.. ..++-|.++|||-+|+.
T Consensus 8 ~d~d~dg~~eLlvGs~D~~IRvf~~~----e~---~~E----i~e-----~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 8 FDFDGDGENELLVGSDDFEIRVFKGD----EI---VAE----ITE-----TDKVTSLCSLGG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred EecCCCCcceEEEecCCcEEEEEeCC----cE---EEE----Eec-----ccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence 3445443 789999999988877651 11 111 221 468999999888 56888999999999998
Q ss_pred CCCeEEEeceecCcEEEEEEcCC-C--C-eEEEEeCCccE
Q 000736 105 DGNATEVVGRVEGGVRFISPSPD-G--D-LLGVTTGFGQI 140 (1323)
Q Consensus 105 ~~~~~e~vg~~~~~I~~~awSPD-G--~-~LA~~s~d~tV 140 (1323)
....+.+... ..+.++++..- | . -|++|=.+|.|
T Consensus 71 ~~RlWRiKSK--~~~~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 71 SQRLWRIKSK--NQVTSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred cceeeeeccC--CCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence 7766666544 33666666433 2 1 35556556655
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.49 Score=54.31 Aligned_cols=114 Identities=17% Similarity=0.183 Sum_probs=73.0
Q ss_pred CCEEEEEeCCCcEEEEeccc-ccccccceeeccccccccccCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCeE
Q 000736 32 QNRLFFASSANNIYSAQLSS-FQNERASIKTAISAEIEHIDLEPGDSITAFDYLM-EKEALIVGTSSGLLLLHSVDGNAT 109 (1323)
Q Consensus 32 ~~~l~~~s~~~~i~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~sp-dg~~La~as~dG~I~lw~~~~~~~ 109 (1323)
++.|+.++-++.|+.+|+-. .+++. |...- +-.+..|++++.+. +++.|.+.+-+|+|+|||..--++
T Consensus 264 ~nLv~~GcRngeI~~iDLR~rnqG~~-~~a~r---------lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~ 333 (425)
T KOG2695|consen 264 DNLVFNGCRNGEIFVIDLRCRNQGNG-WCAQR---------LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC 333 (425)
T ss_pred CCeeEecccCCcEEEEEeeecccCCC-cceEE---------EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc
Confidence 56777778888999999931 11222 33321 22246899999988 888998889999999999864222
Q ss_pred E-EeceecCcEEEEE-----EcCCCCeEEEEeCCccEEEEe-ecCceeeeeee
Q 000736 110 E-VVGRVEGGVRFIS-----PSPDGDLLGVTTGFGQILVMT-HDWDLLYENPL 155 (1323)
Q Consensus 110 e-~vg~~~~~I~~~a-----wSPDG~~LA~~s~d~tV~l~t-~~~d~~~e~~l 155 (1323)
. -|-..++.|+..+ ..|....+++++.|--.++|+ +++..+.+.+.
T Consensus 334 ~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 334 KKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred ccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 1 1212223344333 355666788888887788886 44555555544
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.76 E-value=14 Score=42.97 Aligned_cols=180 Identities=16% Similarity=0.177 Sum_probs=109.7
Q ss_pred hHHHHHHHHhcCCcccchHhHHHHhcCCchhccccHHHHhcCHHHHHHHHHHcCC--CcH----HHHHHHHHHHhcchHH
Q 000736 905 NLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGD--SYH----ADCLNLMKKYAQLFPL 978 (1323)
Q Consensus 905 ~lal~VAq~sqkDPkeYLpfL~~L~~l~~~~~~~~Id~~L~rye~Al~~l~~~g~--~~~----~~ale~~~~~~~ly~~ 978 (1323)
|=|+.|=|.--.-|. ++|=|++..+-..-+.|.. -|=|+.|...|...-+ +.. ...+..+..- +.|++
T Consensus 86 DRAIRiHQ~L~~spd--lT~~qr~lAl~qL~~Dym~---aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~t-reW~K 159 (389)
T COG2956 86 DRAIRIHQTLLESPD--LTFEQRLLALQQLGRDYMA---AGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQAT-REWEK 159 (389)
T ss_pred HHHHHHHHHHhcCCC--CchHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHh-hHHHH
Confidence 444555454445555 7777777776544445544 3558888888876532 222 3446677888 89999
Q ss_pred HHhhc-----CCc----HHHHHHHHHHHHHHhcccCHHHHHHHHHhcCCH-HHHH-------HHHHHhCCHHHHHHHHh-
Q 000736 979 GLKLI-----TDP----AKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL-EKAM-------KAYRASGNWSGVLTVAG- 1040 (1323)
Q Consensus 979 AL~L~-----~d~----~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~-~kAl-------~~y~~ag~W~~al~lA~- 1040 (1323)
|++.+ -++ -+...++.++|+.+....+++.|.....+|=.- .+.+ +.+...|+++.|+..-.
T Consensus 160 AId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~ 239 (389)
T COG2956 160 AIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALER 239 (389)
T ss_pred HHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHH
Confidence 99865 222 357788999999999999999988777665211 0111 23334445555533221
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhc-----CCHHHHHHHHHHh
Q 000736 1041 LLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYC-----GDVTNGISLLIDA 1090 (1323)
Q Consensus 1041 ~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl-----~d~e~Av~~~i~~ 1090 (1323)
.+.-+++=+.+++..|.+.....|+.++....+.++. -+++.++.-+++.
T Consensus 240 v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~ 294 (389)
T COG2956 240 VLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIEL 294 (389)
T ss_pred HHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHH
Confidence 1222455666777777777777888888777766643 2344444444433
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=91.68 E-value=1.1 Score=57.30 Aligned_cols=157 Identities=11% Similarity=0.033 Sum_probs=94.5
Q ss_pred ecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCee
Q 000736 182 RGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE 261 (1323)
Q Consensus 182 spDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~nGl~ 261 (1323)
+-++++|- +|. ..|+|-+-|..+-+.+.++..|.+.+.. |.-.|++|++++.. -++..
T Consensus 184 R~Nnr~lf-~G~------t~G~V~LrD~~s~~~iht~~aHs~siSD--fDv~GNlLitCG~S--------~R~~~----- 241 (1118)
T KOG1275|consen 184 RYNNRNLF-CGD------TRGTVFLRDPNSFETIHTFDAHSGSISD--FDVQGNLLITCGYS--------MRRYN----- 241 (1118)
T ss_pred EecCcEEE-eec------ccceEEeecCCcCceeeeeeccccceee--eeccCCeEEEeecc--------ccccc-----
Confidence 45566655 442 2467777777666777777767665543 45567777766542 11100
Q ss_pred EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecC
Q 000736 262 RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLD 341 (1323)
Q Consensus 262 ~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~ 341 (1323)
+ + -|. -|++||+.++.- .-.+.++ ..+..+.|+|.=+.++++.++.
T Consensus 242 -----l-----------~------------~D~---FvkVYDLRmmra--l~PI~~~-~~P~flrf~Psl~t~~~V~S~s 287 (1118)
T KOG1275|consen 242 -----L-----------A------------MDP---FVKVYDLRMMRA--LSPIQFP-YGPQFLRFHPSLTTRLAVTSQS 287 (1118)
T ss_pred -----c-----------c------------ccc---hhhhhhhhhhhc--cCCcccc-cCchhhhhcccccceEEEEecc
Confidence 0 0 112 588999887642 1123332 2336688999888889998888
Q ss_pred CcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEE
Q 000736 342 GQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVV 420 (1323)
Q Consensus 342 g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vPppm~~~~l-~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw 420 (1323)
|+....+- +. +.- ||...+.+ ...+.+....+|++| +.||.+.++|.|.+|
T Consensus 288 Gq~q~vd~---~~----------------------lsN-P~~~~~~v~p~~s~i~~fDiSsn~--~alafgd~~g~v~~w 339 (1118)
T KOG1275|consen 288 GQFQFVDT---AT----------------------LSN-PPAGVKMVNPNGSGISAFDISSNG--DALAFGDHEGHVNLW 339 (1118)
T ss_pred cceeeccc---cc----------------------cCC-CccceeEEccCCCcceeEEecCCC--ceEEEecccCcEeee
Confidence 87643220 00 001 11111112 234458889999999 999999999999999
Q ss_pred EC
Q 000736 421 DL 422 (1323)
Q Consensus 421 ~~ 422 (1323)
.-
T Consensus 340 a~ 341 (1118)
T KOG1275|consen 340 AD 341 (1118)
T ss_pred cC
Confidence 83
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.65 E-value=1.2 Score=53.38 Aligned_cols=106 Identities=12% Similarity=-0.014 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHhc---------------------CCHHHHHHHHHHhCC-----HHHHHHHHhh
Q 000736 988 KMEQVLEAWADHLSDVKCFEDAATTYFCC---------------------SSLEKAMKAYRASGN-----WSGVLTVAGL 1041 (1323)
Q Consensus 988 ~~~~i~~~~A~~L~~~~~~~eAa~~y~~a---------------------g~~~kAl~~y~~ag~-----W~~al~lA~~ 1041 (1323)
-..+-|..+|.|+.-++++|.|..+|.+| .|...|+++|++|-+ +|.=..+.+.
T Consensus 328 yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 328 YRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQA 407 (559)
T ss_pred CCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHH
Confidence 34567788999999999999999999988 355889999987743 2221222211
Q ss_pred ---cCCCHHHHHHHHHHHHHHHH--HcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHH
Q 000736 1042 ---LKLGKDEVAKLAQELCEELQ--ALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEA 1096 (1323)
Q Consensus 1042 ---l~~~~~~~~~l~~~la~~L~--~~~~~~eAa~i~~~yl~d~e~Av~~~i~~~~w~eA 1096 (1323)
++|. ...-.+..-|..|. ..+....-+++|.+ ++..++||.||.++-...++
T Consensus 408 Yeim~Mh--~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k-l~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 408 YEIMKMH--FYALYYFQKALELKPNDSRLWVALGECYEK-LNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHhcch--HHHHHHHHHHHhcCCCchHHHHHHHHHHHH-hccHHHHHHHHHHHHhcccc
Confidence 1111 01112222233332 12334556888888 99999999999877665554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=91.62 E-value=0.8 Score=41.58 Aligned_cols=59 Identities=20% Similarity=0.186 Sum_probs=36.4
Q ss_pred HHHHhcCCHHHHHHHHHHhCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000736 1011 TTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1323)
Q Consensus 1011 ~~y~~ag~~~kAl~~y~~ag~W~~al~lA~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1323)
.+|...|++++|+++| ++++.+.+.++-+..++......+|..+...|++++|.+.|.+
T Consensus 13 ~~~~~~~~~~~A~~~~------~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 13 RVYRELGRYDEALDYY------EKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHTT-HHHHHHHH------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHH------HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444455555555554 3344554444422334566777888888888888888888766
|
... |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.46 E-value=1.9 Score=53.76 Aligned_cols=50 Identities=22% Similarity=0.222 Sum_probs=36.7
Q ss_pred hhcCCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhcC---------------------CHHHHHHHHHHhC
Q 000736 981 KLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCS---------------------SLEKAMKAYRASG 1030 (1323)
Q Consensus 981 ~L~~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag---------------------~~~kAl~~y~~ag 1030 (1323)
+|...+...++-|.+.|.-+.-+++|+.|.++|.+|- ++++|+.||+.+-
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 3442223466788899999999999999999999884 3477777777653
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=91.44 E-value=1.1 Score=46.28 Aligned_cols=82 Identities=11% Similarity=0.043 Sum_probs=54.0
Q ss_pred hhccccHHHHhcCHHHHHHHHHHcCCCcHHHH---------HHHHHHHhcchHHHHhhc---CCcHHHHHHHHHHHHHHh
Q 000736 934 LLMRYTIDLRLQRFENALKHIVSMGDSYHADC---------LNLMKKYAQLFPLGLKLI---TDPAKMEQVLEAWADHLS 1001 (1323)
Q Consensus 934 ~~~~~~Id~~L~rye~Al~~l~~~g~~~~~~a---------le~~~~~~~ly~~AL~L~---~d~~~~~~i~~~~A~~L~ 1001 (1323)
.+..+.+....|+|++|...|.+.-....+.. -...... +.|++|+.++ .++.....+....|+-+.
T Consensus 51 ~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~-~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~ 129 (145)
T PF09976_consen 51 ALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQ-GQYDEALATLQQIPDEAFKALAAELLGDIYL 129 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 45566777788999999999887532211111 1223566 8899999988 344455566667777777
Q ss_pred cccCHHHHHHHHHhc
Q 000736 1002 DVKCFEDAATTYFCC 1016 (1323)
Q Consensus 1002 ~~~~~~eAa~~y~~a 1016 (1323)
..|++++|...|.+|
T Consensus 130 ~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 130 AQGDYDEARAAYQKA 144 (145)
T ss_pred HCCCHHHHHHHHHHh
Confidence 777777777776654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=91.40 E-value=3.1 Score=42.89 Aligned_cols=85 Identities=13% Similarity=0.040 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHhcCCHH-----------HHHHHHHHhCCHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000736 990 EQVLEAWADHLSDVKCFEDAATTYFCCSSLE-----------KAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCE 1058 (1323)
Q Consensus 990 ~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~-----------kAl~~y~~ag~W~~al~lA~~l~~~~~~~~~l~~~la~ 1058 (1323)
.......|..+...++|++|...|..+-+.. ....++...|++++|+....... ++.-........++
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~-~~~~~~~~~~~~Gd 126 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIP-DEAFKALAAELLGD 126 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-CcchHHHHHHHHHH
Confidence 3444567888888888888888887764321 12356667778888887776542 11111223344556
Q ss_pred HHHHcCChHHHHHHHHH
Q 000736 1059 ELQALGKPGEAAKIALD 1075 (1323)
Q Consensus 1059 ~L~~~~~~~eAa~i~~~ 1075 (1323)
.+...|++.+|...|.+
T Consensus 127 i~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 127 IYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 66666666666666544
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.38 E-value=10 Score=44.92 Aligned_cols=92 Identities=13% Similarity=0.182 Sum_probs=62.5
Q ss_pred eEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCC-eeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCc-EEEEEc
Q 000736 251 SIVFYERNGLERSSFDINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWH 328 (1323)
Q Consensus 251 ~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~-~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~-~~v~Ws 328 (1323)
.|.+++.-.....+| ++.+ ...|.+|+|||..+ +|..++.+. +|+|.|+....- ...+..... ++.+|+
T Consensus 174 Gv~~l~~~~fkssq~-lp~~-g~~IrdlafSp~~~GLl~~asl~n---kiki~dlet~~~----vssy~a~~~~wSC~wD 244 (463)
T KOG1645|consen 174 GVQKLESHDFKSSQI-LPGE-GSFIRDLAFSPFNEGLLGLASLGN---KIKIMDLETSCV----VSSYIAYNQIWSCCWD 244 (463)
T ss_pred ceEEeccCCcchhhc-cccc-chhhhhhccCccccceeeeeccCc---eEEEEeccccee----eeheeccCCceeeeec
Confidence 366776543333332 2222 34689999999998 677777776 899999875321 222322334 999999
Q ss_pred cCCCcEEEEEecCCcEEEEEEEE
Q 000736 329 PTKPLQLICWTLDGQITTYNFIW 351 (1323)
Q Consensus 329 p~~~~~L~~~~~~g~~~~~~~~~ 351 (1323)
-+....++.+..+|.+.+++...
T Consensus 245 lde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 245 LDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred cCCcceeEEeccCceEEEEEccC
Confidence 99988889999999888776543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=91.34 E-value=2.6 Score=49.76 Aligned_cols=105 Identities=15% Similarity=0.066 Sum_probs=75.2
Q ss_pred cccHHHHhcCHHHHHHHHHHcCCC------cHHHHHHHHHHHhcchHHHHhhc-----CCcHHHHHHHHHHHHHHhcccC
Q 000736 937 RYTIDLRLQRFENALKHIVSMGDS------YHADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKC 1005 (1323)
Q Consensus 937 ~~~Id~~L~rye~Al~~l~~~g~~------~~~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~ 1005 (1323)
.+.++..=|+|.+|++++.+.-+. .+-.|.++.... +.+++|=.+. ..+..-..+....++-+..+++
T Consensus 90 egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qr-gd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d 168 (400)
T COG3071 90 EGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQR-GDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRD 168 (400)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhc-ccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCC
Confidence 446677789999999999986422 134455566677 8888887765 1112333455567899999999
Q ss_pred HHHHHHHHHhcCC--------HHHHHHHHHHhCCHHHHHHHHhhc
Q 000736 1006 FEDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGLL 1042 (1323)
Q Consensus 1006 ~~eAa~~y~~ag~--------~~kAl~~y~~ag~W~~al~lA~~l 1042 (1323)
+..|..--.++-. ..-|.++|.+.|+|++++.+...+
T Consensus 169 ~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L 213 (400)
T COG3071 169 YPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKL 213 (400)
T ss_pred chhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999876666532 256789999999999999887665
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.47 Score=34.50 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=28.5
Q ss_pred eeeeeccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEe
Q 000736 214 LQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE 256 (1323)
Q Consensus 214 l~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e 256 (1323)
...+...+...+.+++|.|+++++++++.+ ..|.+|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d------~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDD------GTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCC------CeEEEcC
Confidence 344445567788999999999999999875 4588774
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=91.28 E-value=43 Score=40.86 Aligned_cols=256 Identities=15% Similarity=0.156 Sum_probs=122.4
Q ss_pred ceeEEeee-cCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEE
Q 000736 22 ILQFSALD-IEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1323)
Q Consensus 22 ~~~~~~~d-~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~ 100 (1323)
.+.+++|- .|.+.-+.+...+.|.+-+- .++ .|....+|.... .++ .-...+|.|. +++ ..++++.|.|.
T Consensus 89 ~L~~V~F~~~d~~~GwAVG~~G~IL~T~D---GG~-tW~~~~~~~~~~-~~~--~~~l~~v~f~-~~~-g~~vG~~G~il 159 (398)
T PLN00033 89 VLLDIAFVPDDPTHGFLLGTRQTLLETKD---GGK-TWVPRSIPSAED-EDF--NYRFNSISFK-GKE-GWIIGKPAILL 159 (398)
T ss_pred ceEEEEeccCCCCEEEEEcCCCEEEEEcC---CCC-CceECccCcccc-ccc--ccceeeeEEE-CCE-EEEEcCceEEE
Confidence 44555552 35566777777776655332 222 255432221100 000 1135777775 444 54556777554
Q ss_pred EEeCCC-CeEEEece---ecCcEEEEEEcCCCCeEEEEeCCccEEEEe---ecCceeeeeeec-ccC--CCceeccCccc
Q 000736 101 LHSVDG-NATEVVGR---VEGGVRFISPSPDGDLLGVTTGFGQILVMT---HDWDLLYENPLE-ELA--EGFDVHEPELS 170 (1323)
Q Consensus 101 lw~~~~-~~~e~vg~---~~~~I~~~awSPDG~~LA~~s~d~tV~l~t---~~~d~~~e~~l~-~~~--~~~~Vs~tqf~ 170 (1323)
-..++ ...+.+.. .++.-..+..-.++. ..+++..|+|..-+ ..|......... +.. ....++...
T Consensus 160 -~T~DgG~tW~~~~~~~~~p~~~~~i~~~~~~~-~~ivg~~G~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~-- 235 (398)
T PLN00033 160 -HTSDGGETWERIPLSPKLPGEPVLIKATGPKS-AEMVTDEGAIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGAS-- 235 (398)
T ss_pred -EEcCCCCCceECccccCCCCCceEEEEECCCc-eEEEeccceEEEECCCCCCceEcccccccccccccccccccccc--
Confidence 33443 33442211 111112222333333 33445677765433 246543111100 000 000000000
Q ss_pred cCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCce-eeeeccCCCceeEEEEccCCCeEEEEecCCCCCCC
Q 000736 171 SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL-QASSELKAFMGAVLEWMPSGANIAAVYDRKSENKC 249 (1323)
Q Consensus 171 ~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l-~~t~e~~~~~v~slawsPdG~lIAs~s~d~~~~~~ 249 (1323)
..++....+.-++||.+++ ++.. ...++-||. .+.. .....+....+.+++|.++|.++.++..
T Consensus 236 ~y~Gsf~~v~~~~dG~~~~-vg~~------G~~~~s~d~-G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~------- 300 (398)
T PLN00033 236 YYTGTFSTVNRSPDGDYVA-VSSR------GNFYLTWEP-GQPYWQPHNRASARRIQNMGWRADGGLWLLTRG------- 300 (398)
T ss_pred eeccceeeEEEcCCCCEEE-EECC------ccEEEecCC-CCcceEEecCCCccceeeeeEcCCCCEEEEeCC-------
Confidence 1123346677889999988 7631 245555654 2222 3333344556789999999999887754
Q ss_pred CeEEEEeCCCeeEE---EEEe-ccC-CCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeE
Q 000736 250 PSIVFYERNGLERS---SFDI-NEQ-IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1323)
Q Consensus 250 ~~V~~~e~nGl~~~---~f~l-~~~-~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n~~wy 310 (1323)
. -.++.+++-+.. +|.. +.. ....+.++.|.+|++.++++... .|....-...+|.
T Consensus 301 G-~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G----~v~~s~D~G~tW~ 361 (398)
T PLN00033 301 G-GLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSG----ILLRSTDGGKSWK 361 (398)
T ss_pred c-eEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCC----cEEEeCCCCccee
Confidence 2 334544332211 2321 111 12358899999999988887543 3544444445563
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=91.18 E-value=6.2 Score=52.39 Aligned_cols=169 Identities=15% Similarity=0.010 Sum_probs=113.9
Q ss_pred chhccccHHHHhcCHHHHHHHHHHcC---CCc---HHHHHHHHHHHhcchHHHHhhc---CCc-HHHHHHHHHHHHHHhc
Q 000736 933 PLLMRYTIDLRLQRFENALKHIVSMG---DSY---HADCLNLMKKYAQLFPLGLKLI---TDP-AKMEQVLEAWADHLSD 1002 (1323)
Q Consensus 933 ~~~~~~~Id~~L~rye~Al~~l~~~g---~~~---~~~ale~~~~~~~ly~~AL~L~---~d~-~~~~~i~~~~A~~L~~ 1002 (1323)
..+-++-|....|+|+.|+..|.++- +.. ...-+.+.... +.+++|+..+ .+| ...-......|..+..
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~-G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWA-GRDQEVIDVYERYQSSMNISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHc-CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 45667778888899999999998874 221 11224566677 8899999988 232 2223444556789999
Q ss_pred ccCHHHHHHHHHhcC-----CH---HHHHHHHHHhCCHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 000736 1003 VKCFEDAATTYFCCS-----SL---EKAMKAYRASGNWSGVLTVAGLLK-LGKDEVAKLAQELCEELQALGKPGEAAKIA 1073 (1323)
Q Consensus 1003 ~~~~~eAa~~y~~ag-----~~---~kAl~~y~~ag~W~~al~lA~~l~-~~~~~~~~l~~~la~~L~~~~~~~eAa~i~ 1073 (1323)
+++|.+|..+|.++- +. -..+..|...++.++|+..+.++. .+++ . ..+.-++..+...+++.+|.+.|
T Consensus 115 ~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~-~-~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPT-V-QNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc-h-HHHHHHHHHHHhcchHHHHHHHH
Confidence 999999999999983 21 122366778899999999888753 2222 2 22344455555677887788888
Q ss_pred HHhc----CCHHHH---HHHHHHhcCHHHHHHHHHhcC
Q 000736 1074 LDYC----GDVTNG---ISLLIDARDWEEALRVAFMHR 1104 (1323)
Q Consensus 1074 ~~yl----~d~e~A---v~~~i~~~~w~eA~rla~~~~ 1104 (1323)
.+.+ ++.+-. +..+.+.+.-.-|++++.+|.
T Consensus 193 ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p 230 (822)
T PRK14574 193 SEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENP 230 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc
Confidence 8843 233322 344456777889999999885
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=91.17 E-value=4.5 Score=52.08 Aligned_cols=150 Identities=12% Similarity=0.191 Sum_probs=90.7
Q ss_pred ccHHHHhcCHHHHHHHHHHcCCCcHHHHHHHHHHH--hcchHHHHh----hc-C---CcH--HHHHHHHHHHHHHhcccC
Q 000736 938 YTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKY--AQLFPLGLK----LI-T---DPA--KMEQVLEAWADHLSDVKC 1005 (1323)
Q Consensus 938 ~~Id~~L~rye~Al~~l~~~g~~~~~~ale~~~~~--~~ly~~AL~----L~-~---d~~--~~~~i~~~~A~~L~~~~~ 1005 (1323)
|.+-..-|.||.|++.|.+. +...-+|+-+..-. =+|....-. ++ . ++. .+..+...|...+ ...+
T Consensus 265 f~~LlLtgqFE~AI~~L~~~-~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F-~~td 342 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRN-EFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSF-EITD 342 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT---T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHHTT-TTT-
T ss_pred HHHHHHHhhHHHHHHHHHhh-ccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHH-hccC
Confidence 47777889999999999983 23356666555332 022222211 22 1 111 3456677777755 4668
Q ss_pred HHHHHHHHHhcCCHH---------HHH-HHHHHhCCHHHHHHH-----------Hhh------cCCCHHHHHHHHHHHHH
Q 000736 1006 FEDAATTYFCCSSLE---------KAM-KAYRASGNWSGVLTV-----------AGL------LKLGKDEVAKLAQELCE 1058 (1323)
Q Consensus 1006 ~~eAa~~y~~ag~~~---------kAl-~~y~~ag~W~~al~l-----------A~~------l~~~~~~~~~l~~~la~ 1058 (1323)
..+|..+|.....+. +++ +.-...++|...+-- -.+ +.-.++.+.+++...|.
T Consensus 343 ~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~A~ 422 (613)
T PF04097_consen 343 PREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQAAR 422 (613)
T ss_dssp HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHHHH
Confidence 899999888876542 222 333355667666521 112 22245678899999999
Q ss_pred HHHHcCChHHHHHHHHHhcCCHHHHHHHHHHh
Q 000736 1059 ELQALGKPGEAAKIALDYCGDVTNGISLLIDA 1090 (1323)
Q Consensus 1059 ~L~~~~~~~eAa~i~~~yl~d~e~Av~~~i~~ 1090 (1323)
.+.+.|++.+|..+|.- +++++.+++++++.
T Consensus 423 ~~e~~g~~~dAi~Ly~L-a~~~d~vl~lln~~ 453 (613)
T PF04097_consen 423 EAEERGRFEDAILLYHL-AEEYDKVLSLLNRL 453 (613)
T ss_dssp HHHHCT-HHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHH-HhhHHHHHHHHHHH
Confidence 99999999999999999 99999999999875
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=91.17 E-value=9.3 Score=48.87 Aligned_cols=156 Identities=13% Similarity=0.101 Sum_probs=85.6
Q ss_pred cEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccc
Q 000736 118 GVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNS 197 (1323)
Q Consensus 118 ~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~ 197 (1323)
.+.+++.|+||..+|..+.++........+.. .....+ ...+ -.......-+|.++|..-. + |..
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~-~~~~~~----~~~~------~~~~~Lt~PS~d~~g~vWt-v---d~~ 428 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPG-ASIGVH----SWGV------TADGRLTSPSWDGRGDLWV-V---DRD 428 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCC-Cccccc----ccee------eccCcccCCcCcCCCCEEE-e---cCC
Confidence 68899999999999999887764332111000 000000 0000 0012346788988885333 4 211
Q ss_pred cCCCCEEEEEECCCCceeeeec-cCCC-ceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCC--Ce-eEEEE-EeccCC
Q 000736 198 SKLHKRLKVWERDSGTLQASSE-LKAF-MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN--GL-ERSSF-DINEQI 271 (1323)
Q Consensus 198 ~~~d~~IrVWd~~~G~l~~t~e-~~~~-~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~n--Gl-~~~~f-~l~~~~ 271 (1323)
..+.+.+++... +|+....-. ...+ .|..+.-||||..+|....... .....|..-.++ |. ....+ .+ .+.
T Consensus 429 ~~~~~vl~v~~~-~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g-~~~v~va~V~R~~~G~~~l~~~~~l-~~~ 505 (599)
T PRK13613 429 PADPRLLWLLQG-DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDG-RRSLQIGRIVRDAKAVVSVEEFRSL-APE 505 (599)
T ss_pred CCCceEEEEEcC-CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCC-CcEEEEEEEEeCCCCcEEeeccEEe-ccC
Confidence 122345888776 777643211 2334 7899999999999998765321 011223334443 32 11111 11 122
Q ss_pred CCcEEEEEEccCCCeeEEEE
Q 000736 272 DSTVELLKWNCMSDLLAAVV 291 (1323)
Q Consensus 272 ~~~V~~laWSpDg~~LA~~~ 291 (1323)
-..+.+++|..++++++.+.
T Consensus 506 l~~v~~~~W~~~~sL~Vlg~ 525 (599)
T PRK13613 506 LEDVTDMSWAGDSQLVVLGR 525 (599)
T ss_pred CCccceeEEcCCCEEEEEec
Confidence 23488999999999877563
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.15 E-value=24 Score=46.27 Aligned_cols=171 Identities=12% Similarity=0.191 Sum_probs=94.3
Q ss_pred CcccchHhHHHHhcCC-chhccccHHHHhcCHHHHHHHHHHcCCCcHHHHHHHHHHHhcchHHHHhhcCCcHHHHHHHHH
Q 000736 917 DPKEFLPYLQELESMP-PLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEA 995 (1323)
Q Consensus 917 DPkeYLpfL~~L~~l~-~~~~~~~Id~~L~rye~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~~d~~~~~~i~~~ 995 (1323)
||.--+.++++|.+.+ +.. ++|..--+=||+|-..|.+-.. ...|++...++=+--++|-+.+ +.-..++++..
T Consensus 1035 d~trVm~YI~rLdnyDa~~i--a~iai~~~LyEEAF~ifkkf~~--n~~A~~VLie~i~~ldRA~efA-e~~n~p~vWsq 1109 (1666)
T KOG0985|consen 1035 DRTRVMEYINRLDNYDAPDI--AEIAIENQLYEEAFAIFKKFDM--NVSAIQVLIENIGSLDRAYEFA-ERCNEPAVWSQ 1109 (1666)
T ss_pred ChHHHHHHHHHhccCCchhH--HHHHhhhhHHHHHHHHHHHhcc--cHHHHHHHHHHhhhHHHHHHHH-HhhCChHHHHH
Confidence 4443455556665552 221 2222222334444444444422 2334433333223334444433 11123456667
Q ss_pred HHHHHhcccCHHHHHHHHHhcC---CHHHHHHHHHHhCCHHHHH---HHHhhc-C---CCHH------------HHH---
Q 000736 996 WADHLSDVKCFEDAATTYFCCS---SLEKAMKAYRASGNWSGVL---TVAGLL-K---LGKD------------EVA--- 1050 (1323)
Q Consensus 996 ~A~~L~~~~~~~eAa~~y~~ag---~~~kAl~~y~~ag~W~~al---~lA~~l-~---~~~~------------~~~--- 1050 (1323)
.|.--.+.+.-.+|...|++|. +|.+-++...++|.|++++ .+|++- . .+.+ ++.
T Consensus 1110 lakAQL~~~~v~dAieSyikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1110 LAKAQLQGGLVKDAIESYIKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred HHHHHHhcCchHHHHHHHHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHh
Confidence 7777778889999999999996 4577888888999999984 344431 1 0100 111
Q ss_pred -----HHHHHHHHHHHHcCChHHHHHHHHH------------hcCCHHHHHHHHHHhcC
Q 000736 1051 -----KLAQELCEELQALGKPGEAAKIALD------------YCGDVTNGISLLIDARD 1092 (1323)
Q Consensus 1051 -----~l~~~la~~L~~~~~~~eAa~i~~~------------yl~d~e~Av~~~i~~~~ 1092 (1323)
.-....++.+-+.|+|+.|.-+|-. |+|++..||+.-.+++.
T Consensus 1190 ~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns 1248 (1666)
T KOG0985|consen 1190 AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANS 1248 (1666)
T ss_pred cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 1123455667788888877766644 56777777777666543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=91.09 E-value=6.1 Score=39.72 Aligned_cols=58 Identities=21% Similarity=0.199 Sum_probs=46.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000736 1008 DAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1323)
Q Consensus 1008 eAa~~y~~ag~~~kAl~~y~~ag~W~~al~lA~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1323)
+.+.+|...|+.++|+..|.++- . .+++.+........++..|...|++++|..++.+
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al------~----~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~ 63 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRAL------A----AGLSGADRRRALIQLASTLRNLGRYDEALALLEE 63 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH------H----cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56788899999999999996543 2 2445556667888999999999999999999877
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.05 E-value=13 Score=44.25 Aligned_cols=142 Identities=14% Similarity=0.103 Sum_probs=81.7
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEE-EeCCCCeEEEe-ceecCcEEEEEEcCCCCeEEEEeCCccEEEEee----cCc
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLLLL-HSVDGNATEVV-GRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH----DWD 148 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~l-w~~~~~~~e~v-g~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~----~~d 148 (1323)
.+.+.++.+.|++..+++ +..|.+.. ++-.+.....+ ......++++++.|+|+.++++ ..|.+++-+. .|.
T Consensus 172 ~g~~~~i~~~~~g~~v~~-g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAV-SSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEE-eCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccc
Confidence 357899999999866554 55676653 22222334422 2224679999999999877654 5577654322 233
Q ss_pred eeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeee---ccCCCce
Q 000736 149 LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS---ELKAFMG 225 (1323)
Q Consensus 149 ~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~---e~~~~~v 225 (1323)
.+. .... ...-.+..+.++|+|..++ ++. ++.+. ...+.|+.-... ...+...
T Consensus 250 ~~~---~~~~------------~~~~~l~~v~~~~~~~~~~-~G~-------~G~v~-~S~d~G~tW~~~~~~~~~~~~~ 305 (334)
T PRK13684 250 KPI---IPEI------------TNGYGYLDLAYRTPGEIWA-GGG-------NGTLL-VSKDGGKTWEKDPVGEEVPSNF 305 (334)
T ss_pred ccc---CCcc------------ccccceeeEEEcCCCCEEE-EcC-------CCeEE-EeCCCCCCCeECCcCCCCCcce
Confidence 211 0000 0012457899999999887 542 34443 455445443322 2222335
Q ss_pred eEEEEccCCCeEEEEec
Q 000736 226 AVLEWMPSGANIAAVYD 242 (1323)
Q Consensus 226 ~slawsPdG~lIAs~s~ 242 (1323)
..+.|..+++.+|++..
T Consensus 306 ~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 306 YKIVFLDPEKGFVLGQR 322 (334)
T ss_pred EEEEEeCCCceEEECCC
Confidence 67788878888887754
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=91.02 E-value=0.36 Score=53.49 Aligned_cols=73 Identities=15% Similarity=0.125 Sum_probs=58.3
Q ss_pred CCCEEEEEEecCC-CEEEEEeCCCcEEEEeCCCCeE--EEeceecCcEEEEEEcC-CCCeEEEEeCCccEEEEeecC
Q 000736 75 GDSITAFDYLMEK-EALIVGTSSGLLLLHSVDGNAT--EVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILVMTHDW 147 (1323)
Q Consensus 75 ~~~V~~v~~spdg-~~La~as~dG~I~lw~~~~~~~--e~vg~~~~~I~~~awSP-DG~~LA~~s~d~tV~l~t~~~ 147 (1323)
.+.|.+++-+|-. ..+|+|+.||.|.|||.+.... .....|+..|+-+-|.| +++.|.++++||.+..|+...
T Consensus 179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 3568888888854 5778999999999999876432 34556789999999998 588999999999997776543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.85 E-value=1.3 Score=52.23 Aligned_cols=126 Identities=14% Similarity=0.129 Sum_probs=88.8
Q ss_pred hcCCcccchHhHHHHhcC-----CchhccccHHHHhcCHHHHHHHHHHcCC------CcHHHHHHHHHHHhcchHHHHhh
Q 000736 914 SQRDPKEFLPYLQELESM-----PPLLMRYTIDLRLQRFENALKHIVSMGD------SYHADCLNLMKKYAQLFPLGLKL 982 (1323)
Q Consensus 914 sqkDPkeYLpfL~~L~~l-----~~~~~~~~Id~~L~rye~Al~~l~~~g~------~~~~~ale~~~~~~~ly~~AL~L 982 (1323)
++.+-.|-|-|.=+|+.+ +-.+|-+.|...|..-..|+++|.++.. .-....-+++... +.=.+|++.
T Consensus 536 ~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqe-gdksqafq~ 614 (840)
T KOG2003|consen 536 ALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQE-GDKSQAFQC 614 (840)
T ss_pred HhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcc-cchhhhhhh
Confidence 345555556666666654 4578888999999999999999998751 1123334555555 666677776
Q ss_pred cC-----CcHHHHHHHHHHHHHHhcccCHHHHHHHHHhcCCH-------H-HHHHHHHHhCCHHHHHHHHhh
Q 000736 983 IT-----DPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL-------E-KAMKAYRASGNWSGVLTVAGL 1041 (1323)
Q Consensus 983 ~~-----d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~-------~-kAl~~y~~ag~W~~al~lA~~ 1041 (1323)
++ -|-.+ +..+-.|.|+.+.+-|+.|..+|++|.-. + ....||++.|++++|+.+-+.
T Consensus 615 ~ydsyryfp~ni-e~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~ 685 (840)
T KOG2003|consen 615 HYDSYRYFPCNI-ETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKD 685 (840)
T ss_pred hhhcccccCcch-HHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 53 33322 35567788999999999999999998633 2 234799999999999987654
|
|
| >PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C | Back alignment and domain information |
|---|
Probab=90.84 E-value=1.8 Score=50.18 Aligned_cols=94 Identities=20% Similarity=0.360 Sum_probs=60.0
Q ss_pred HHHhcCCHHHHHHHHHHhCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCh-----HHHHHHHHHhcCCHHHHHHH
Q 000736 1012 TYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKP-----GEAAKIALDYCGDVTNGISL 1086 (1323)
Q Consensus 1012 ~y~~ag~~~kAl~~y~~ag~W~~al~lA~~l~~~~~~~~~l~~~la~~L~~~~~~-----~eAa~i~~~yl~d~e~Av~~ 1086 (1323)
-+...|+.++|+++..+.++|-.|+-||..+ +++...++..+..+.-...++. .-=..+|.=+.|+.+.+|+-
T Consensus 4 ~~Ll~G~~~~Av~~al~~~~wa~ALlLAs~~--g~e~~~~v~~~y~~~~~~~~~~~~~~~~~L~~l~~v~~g~~~~~v~~ 81 (284)
T PF12931_consen 4 QLLLVGNREEAVELALDNGLWAHALLLASSL--GPELWKKVVQEYFRREFSAGSPSSKITHLLRTLYQVFSGNSPEAVDE 81 (284)
T ss_dssp HHHHTT-HHHHHHHHHHTT-HHHHHHHHHTS---HHHHHHHHHHHHH--------THHHHHHHHHHHHHTTT-HHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHCCChHHHHHHHHhc--CHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHcCCcHHHHHH
Confidence 4677899999999999999999999999887 4666665555554444323332 11234555568999999988
Q ss_pred HHHh------------cCHHHHHHHHHhcCCch
Q 000736 1087 LIDA------------RDWEEALRVAFMHRRED 1107 (1323)
Q Consensus 1087 ~i~~------------~~w~eA~rla~~~~~~d 1107 (1323)
++.. ++|.+.+.+.-.+..++
T Consensus 82 l~~~~~~~~~~~~~~~~~Wre~lA~il~N~~~~ 114 (284)
T PF12931_consen 82 LVPNSAAPPLEGEWDLDNWRETLAIILSNRTPE 114 (284)
T ss_dssp HHH-----HHHHHHHHHSHHHHHHHHHHTS---
T ss_pred hccccccccccccchhcCHHHHHHHHHhCCCcc
Confidence 8765 48999998877665443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=90.28 E-value=0.97 Score=54.59 Aligned_cols=101 Identities=17% Similarity=0.217 Sum_probs=69.4
Q ss_pred hHhHHHHhcCCchhccccHHHHhcCHHHHHHHHHHcCCCcHHHHHHHHHHHhcchHHHHhhcCCcHHHHHHHHHHHHHHh
Q 000736 922 LPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLS 1001 (1323)
Q Consensus 922 LpfL~~L~~l~~~~~~~~Id~~L~rye~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~~d~~~~~~i~~~~A~~L~ 1001 (1323)
+.++++|..-++. +... -.+.+..+++ ..+|+.++.+. |+.. |.. -.++..+|++|.
T Consensus 189 i~lle~L~~~~pe-----v~~~------LA~v~l~~~~--E~~AI~ll~~a-------L~~~--p~d-~~LL~~Qa~fLl 245 (395)
T PF09295_consen 189 IELLEKLRERDPE-----VAVL------LARVYLLMNE--EVEAIRLLNEA-------LKEN--PQD-SELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHhcCCc-----HHHH------HHHHHHhcCc--HHHHHHHHHHH-------HHhC--CCC-HHHHHHHHHHHH
Confidence 6777777766432 2222 1333334443 46666555444 3333 211 678889999999
Q ss_pred cccCHHHHHHHHHhcC--------CHHHHHHHHHHhCCHHHHHHHHhhcCCC
Q 000736 1002 DVKCFEDAATTYFCCS--------SLEKAMKAYRASGNWSGVLTVAGLLKLG 1045 (1323)
Q Consensus 1002 ~~~~~~eAa~~y~~ag--------~~~kAl~~y~~ag~W~~al~lA~~l~~~ 1045 (1323)
.+++|+.|..+..+|= -+....+||+..|+|++|+.....+++-
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 9999999999998883 4577889999999999999877776653
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=90.08 E-value=1.6 Score=56.72 Aligned_cols=101 Identities=14% Similarity=0.204 Sum_probs=64.4
Q ss_pred CEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEE-E
Q 000736 33 NRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-V 111 (1323)
Q Consensus 33 ~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e-~ 111 (1323)
+..|.|-+++.++.||+ .... .++. .+. .+.+..+..-.+++=..+| .||+||.+|+|+|||.-+.... .
T Consensus 543 e~tflGls~n~lfriDp--R~~~--~k~v--~~~--~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~ 613 (794)
T PF08553_consen 543 EQTFLGLSDNSLFRIDP--RLSG--NKLV--DSQ--SKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTA 613 (794)
T ss_pred CceEEEECCCceEEecc--CCCC--Ccee--ecc--ccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhc
Confidence 44566655666999999 3321 0111 001 1122234456677777777 7899999999999997664322 2
Q ss_pred eceecCcEEEEEEcCCCCeEEEEeCCccEEEE
Q 000736 112 VGRVEGGVRFISPSPDGDLLGVTTGFGQILVM 143 (1323)
Q Consensus 112 vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~ 143 (1323)
+.+....|..+.-|.||++|+..+. .-+.|+
T Consensus 614 lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi 644 (794)
T PF08553_consen 614 LPGLGDPIIGIDVTADGKWILATCK-TYLLLI 644 (794)
T ss_pred CCCCCCCeeEEEecCCCcEEEEeec-ceEEEE
Confidence 3334578999999999999875544 456554
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=90.06 E-value=1.1 Score=45.09 Aligned_cols=92 Identities=16% Similarity=0.090 Sum_probs=52.0
Q ss_pred hhccccHHHHhcCHHHHHHHHHHc---CC---CcHHHHHHHH---HHHhcchHHHHhhc-------CCcHHHHHHHHHHH
Q 000736 934 LLMRYTIDLRLQRFENALKHIVSM---GD---SYHADCLNLM---KKYAQLFPLGLKLI-------TDPAKMEQVLEAWA 997 (1323)
Q Consensus 934 ~~~~~~Id~~L~rye~Al~~l~~~---g~---~~~~~ale~~---~~~~~ly~~AL~L~-------~d~~~~~~i~~~~A 997 (1323)
.++.+...+.+|+.++|+.+|.++ |. .+....+.+- +.. +.+++|+.++ .+++-...+...+|
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~L-G~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNL-GRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 355566777788888888888764 21 1122222222 455 6777777666 12223444555566
Q ss_pred HHHhcccCHHHHHHHHHhc-----CCHHHHHHHH
Q 000736 998 DHLSDVKCFEDAATTYFCC-----SSLEKAMKAY 1026 (1323)
Q Consensus 998 ~~L~~~~~~~eAa~~y~~a-----g~~~kAl~~y 1026 (1323)
.-|...|++++|...+..+ ..|++||..|
T Consensus 83 l~L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777776666543 3444555444
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.75 E-value=3 Score=54.14 Aligned_cols=120 Identities=13% Similarity=0.154 Sum_probs=77.8
Q ss_pred cchHHHHhhc----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhcCC-------H---HHHHHHHHHhCCHHHHHHHH
Q 000736 974 QLFPLGLKLI----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSS-------L---EKAMKAYRASGNWSGVLTVA 1039 (1323)
Q Consensus 974 ~ly~~AL~L~----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~-------~---~kAl~~y~~ag~W~~al~lA 1039 (1323)
+-|..|+.++ .+-.+...++...|.-+..+++|..|..+|+.|-. . ---.++|.++|.|++|...+
T Consensus 660 g~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 660 GRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred cCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 6678888887 22233557888889999999999999999998831 1 22347788889999986543
Q ss_pred ---hhcCCCHH----HHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHH
Q 000736 1040 ---GLLKLGKD----EVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEE 1095 (1323)
Q Consensus 1040 ---~~l~~~~~----~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~e~Av~~~i~~~~w~e 1095 (1323)
..+..... .+..++.++|+......+ .-..++... .+..+.|+++++..+...+
T Consensus 740 l~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k-~t~eev~~a-~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 740 LKARHLAPSNTSVKFNLALVLKKLAESILRLEK-RTLEEVLEA-VKELEEARRLFTELSKNGD 800 (1018)
T ss_pred HHHHHhCCccchHHhHHHHHHHHHHHHHHhccc-ccHHHHHHH-HHHHHHHHHHHHHHHhcCC
Confidence 33322211 223455566666554433 444455444 6778888888887765544
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=89.75 E-value=6.9 Score=38.63 Aligned_cols=65 Identities=15% Similarity=0.158 Sum_probs=48.1
Q ss_pred EEEEEEec---CC-CEEEEEeCCCcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEee
Q 000736 78 ITAFDYLM---EK-EALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH 145 (1323)
Q Consensus 78 V~~v~~sp---dg-~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~ 145 (1323)
|++++++. || ..|++||+|.+|++|+-+.-..|+.. .+.|.+++=.+. ..+|.+..+|||-++.+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e--~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIVAEITE--TDKVTSLCSLGG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEEEEEec--ccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence 44555544 33 58999999999999997764444433 466888887777 67999999999998753
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=89.70 E-value=30 Score=40.93 Aligned_cols=44 Identities=11% Similarity=0.023 Sum_probs=20.3
Q ss_pred HHHhcccCHHHHHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHhhc
Q 000736 998 DHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLL 1042 (1323)
Q Consensus 998 ~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~ag~W~~al~lA~~l 1042 (1323)
+.+...++..+|..+-.++.. ++-+++|.++|+|++|...|.+.
T Consensus 245 ~~~~~~~~~~eA~~yI~k~~~-~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 245 EACLKYGNKKEASKYIPKIPD-EERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHCCCHHHHHHHHHhCCh-HHHHHHHHHCCCHHHHHHHHHHc
Confidence 334444444444444444333 44445555555555554444443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=89.48 E-value=44 Score=38.19 Aligned_cols=188 Identities=15% Similarity=0.141 Sum_probs=98.5
Q ss_pred cccccCCCCCCEEEEEEecCCCEEEEEeCCC--cEEEEeCCCCeEEEeceecC-----cEEEEEEcCCCCeEEEEeCCcc
Q 000736 67 IEHIDLEPGDSITAFDYLMEKEALIVGTSSG--LLLLHSVDGNATEVVGRVEG-----GVRFISPSPDGDLLGVTTGFGQ 139 (1323)
Q Consensus 67 ~~~~~~~~~~~V~~v~~spdg~~La~as~dG--~I~lw~~~~~~~e~vg~~~~-----~I~~~awSPDG~~LA~~s~d~t 139 (1323)
+..+|..+.....++.|..||..+-+.+.-| .|+.+|+.++++......+. ||+-+ ++++....=.+++
T Consensus 36 v~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~----~d~l~qLTWk~~~ 111 (264)
T PF05096_consen 36 VETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL----GDKLYQLTWKEGT 111 (264)
T ss_dssp EEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE----TTEEEEEESSSSE
T ss_pred EEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE----CCEEEEEEecCCe
Confidence 3445555667789999999998888888888 57779999876542222222 23322 2233333224555
Q ss_pred EEEEee-cCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeee
Q 000736 140 ILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS 218 (1323)
Q Consensus 140 V~l~t~-~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~ 218 (1323)
..+++. +++.+.+.....+. +.++ .||+.|. +| ++..++..+|+.+-+...+.
T Consensus 112 ~f~yd~~tl~~~~~~~y~~EG-----------------WGLt--~dg~~Li-~S------DGS~~L~~~dP~~f~~~~~i 165 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPYPGEG-----------------WGLT--SDGKRLI-MS------DGSSRLYFLDPETFKEVRTI 165 (264)
T ss_dssp EEEEETTTTEEEEEEE-SSS-------------------EEE--ECSSCEE-EE-------SSSEEEEE-TTT-SEEEEE
T ss_pred EEEEccccceEEEEEecCCcc-----------------eEEE--cCCCEEE-EE------CCccceEEECCcccceEEEE
Confidence 555553 35555544443221 5666 6787777 55 34578899998665554433
Q ss_pred ccCC-----CceeEEEEccCCCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEec-------c-----CCCCcEEEEEE
Q 000736 219 ELKA-----FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDIN-------E-----QIDSTVELLKW 280 (1323)
Q Consensus 219 e~~~-----~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~-------~-----~~~~~V~~laW 280 (1323)
...+ ...+-+-|- +|.+.|=.=. ...|...| .+|...+.+.+. . +.....+.|||
T Consensus 166 ~V~~~g~pv~~LNELE~i-~G~IyANVW~------td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAy 238 (264)
T PF05096_consen 166 QVTDNGRPVSNLNELEYI-NGKIYANVWQ------TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAY 238 (264)
T ss_dssp E-EETTEE---EEEEEEE-TTEEEEEETT------SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEE
T ss_pred EEEECCEECCCcEeEEEE-cCEEEEEeCC------CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeE
Confidence 2111 123445553 5655554321 12444455 345555554443 0 11245789999
Q ss_pred ccCCCeeEEEE
Q 000736 281 NCMSDLLAAVV 291 (1323)
Q Consensus 281 SpDg~~LA~~~ 291 (1323)
.|+++.|-+.+
T Consensus 239 d~~~~~l~vTG 249 (264)
T PF05096_consen 239 DPETDRLFVTG 249 (264)
T ss_dssp ETTTTEEEEEE
T ss_pred eCCCCEEEEEe
Confidence 99887666554
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=89.43 E-value=22 Score=45.08 Aligned_cols=158 Identities=16% Similarity=0.081 Sum_probs=86.9
Q ss_pred EEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccC
Q 000736 120 RFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSK 199 (1323)
Q Consensus 120 ~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~ 199 (1323)
.+++.|+||..+|....++.+.++..... .... +. ......-+|.++|-.=. +. + +
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~~-~~~~-~~----------------~~~Lt~PS~d~~g~vWt-v~--~---g 392 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGDRD-AVLL-DT----------------RPGLVAPSLDAQGYVWS-TP--A---S 392 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCCCc-ceee-cc----------------CCccccCcCcCCCCEEE-Ee--C---C
Confidence 78999999999999988876655422101 1100 00 01346788988884322 32 1 1
Q ss_pred CCCEEEEEECCCCceeeee--ccCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEE--EeCCCeeEEEE-E--ec-cCC
Q 000736 200 LHKRLKVWERDSGTLQASS--ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF--YERNGLERSSF-D--IN-EQI 271 (1323)
Q Consensus 200 ~d~~IrVWd~~~G~l~~t~--e~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~~--~e~nGl~~~~f-~--l~-~~~ 271 (1323)
..+.+..... +|.....- -...+.|..+..|+||..+|...+... +..|.+ -.+.|.....+ + +. .+.
T Consensus 393 ~~~~l~~~~~-~G~~~~v~v~~~~~~~I~~lrvSrDG~R~Avi~~~~g---~~~V~va~V~R~~~~P~~L~~~p~~l~~~ 468 (557)
T PRK13615 393 DPRGLVAWGP-DGVGHPVAVSWTATGRVVSLEVARDGARVLVQLETGA---GPQLLVASIVRDGGVPTSLTTTPLELLAS 468 (557)
T ss_pred CceEEEEecC-CCceEEeeccccCCCeeEEEEeCCCccEEEEEEecCC---CCEEEEEEEEeCCCcceEeeeccEEcccC
Confidence 1233333333 56654331 113357899999999999998765322 233433 45533311111 1 11 122
Q ss_pred CCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee
Q 000736 272 DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1323)
Q Consensus 272 ~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~ 305 (1323)
...+.+++|..++++.+.+...+....+++-.+.
T Consensus 469 l~~v~sl~W~~~~~laVl~~~~~~~~~v~~v~v~ 502 (557)
T PRK13615 469 PGTPLDATWVDELDVATLTLAPDGERQVELHQVG 502 (557)
T ss_pred cCcceeeEEcCCCEEEEEeccCCCCceEEEEECC
Confidence 3478999999999977776432222245554444
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=89.40 E-value=21 Score=45.17 Aligned_cols=81 Identities=14% Similarity=0.159 Sum_probs=58.3
Q ss_pred EEeeecCCCEEEEEeCC------------C----cEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCC
Q 000736 25 FSALDIEQNRLFFASSA------------N----NIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKE 88 (1323)
Q Consensus 25 ~~~~d~~~~~l~~~s~~------------~----~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~ 88 (1323)
..++|++.+.||+.+.+ + .|+..|+ .|++..|.-..++-|+= ++......+-+..-.+|+
T Consensus 238 ~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~--~TG~~~W~~Q~~~~D~w--D~d~~~~p~l~d~~~~G~ 313 (527)
T TIGR03075 238 TGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP--DTGKIKWHYQTTPHDEW--DYDGVNEMILFDLKKDGK 313 (527)
T ss_pred ceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc--ccCCEEEeeeCCCCCCc--cccCCCCcEEEEeccCCc
Confidence 45999999999998733 1 5888999 78888887766555432 222223344444446776
Q ss_pred ---EEEEEeCCCcEEEEeCCCCeE
Q 000736 89 ---ALIVGTSSGLLLLHSVDGNAT 109 (1323)
Q Consensus 89 ---~La~as~dG~I~lw~~~~~~~ 109 (1323)
.++.++.+|.+.+.|..+++.
T Consensus 314 ~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 314 PRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred EEEEEEEeCCCceEEEEECCCCce
Confidence 888999999999999988765
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=89.22 E-value=7 Score=39.87 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=28.2
Q ss_pred HHHhcccCHHHHHHHHHhcCCHHHHHHHHHHh-CCHHHHHHHHhh
Q 000736 998 DHLSDVKCFEDAATTYFCCSSLEKAMKAYRAS-GNWSGVLTVAGL 1041 (1323)
Q Consensus 998 ~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~a-g~W~~al~lA~~ 1041 (1323)
......+.|++|..+|.+.|++++|++.+... ++.+.|+..+.+
T Consensus 77 ~~c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 77 KLCEKAKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHHcCcHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHh
Confidence 33344556666777777777777777766665 666666666665
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=89.19 E-value=51 Score=43.28 Aligned_cols=79 Identities=15% Similarity=0.271 Sum_probs=51.5
Q ss_pred cCCCceeEEEEccCCCeEEEEecCCCCCCCCeEE-E---EeCCCeeE--------EEEEec-----cCCCCcEEEEEEcc
Q 000736 220 LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV-F---YERNGLER--------SSFDIN-----EQIDSTVELLKWNC 282 (1323)
Q Consensus 220 ~~~~~v~slawsPdG~lIAs~s~d~~~~~~~~V~-~---~e~nGl~~--------~~f~l~-----~~~~~~V~~laWSp 282 (1323)
+...-|..|..||+|.++|-.+..+ ..|. + |-++|... ..+.+. ......|..+.|.|
T Consensus 82 ~~~f~v~~i~~n~~g~~lal~G~~~-----v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP 156 (717)
T PF10168_consen 82 PPLFEVHQISLNPTGSLLALVGPRG-----VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHP 156 (717)
T ss_pred CCceeEEEEEECCCCCEEEEEcCCc-----EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcC
Confidence 3455689999999999999887642 2222 2 22233110 011111 11234689999999
Q ss_pred CC---CeeEEEEccCCCCeEEEEEeeC
Q 000736 283 MS---DLLAAVVRFEEYDSVKICFFSN 306 (1323)
Q Consensus 283 Dg---~~LA~~~~d~~~~~V~LW~~~n 306 (1323)
.| ..|++-++|. ++++|++.+
T Consensus 157 ~s~~~~~l~vLtsdn---~lR~y~~~~ 180 (717)
T PF10168_consen 157 WSESDSHLVVLTSDN---TLRLYDISD 180 (717)
T ss_pred CCCCCCeEEEEecCC---EEEEEecCC
Confidence 85 7888888888 999999975
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=89.14 E-value=24 Score=43.17 Aligned_cols=27 Identities=26% Similarity=0.220 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhc
Q 000736 1051 KLAQELCEELQALGKPGEAAKIALDYC 1077 (1323)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~yl 1077 (1323)
.+...+|..|...|++++|.+++.+.+
T Consensus 264 ~l~~~~a~~l~~~g~~~~A~~~l~~~l 290 (409)
T TIGR00540 264 ALKIALAEHLIDCDDHDSAQEIIFDGL 290 (409)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 455666677777777777777766644
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=89.02 E-value=47 Score=37.82 Aligned_cols=139 Identities=15% Similarity=0.081 Sum_probs=76.6
Q ss_pred CCCCeEEEEeCCccEEEEeecCceeeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEE
Q 000736 126 PDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLK 205 (1323)
Q Consensus 126 PDG~~LA~~s~d~tV~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~Ir 205 (1323)
..|+.|++|+.+| |.++... +......+. +...|.++.--++-+.|...+ |+.+.
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~-~~~~~~~i~---------------~~~~I~ql~vl~~~~~llvLs--------d~~l~ 59 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLS-DPSKPTRIL---------------KLSSITQLSVLPELNLLLVLS--------DGQLY 59 (275)
T ss_pred cCCCEEEEEECCC-EEEEEec-CCccceeEe---------------ecceEEEEEEecccCEEEEEc--------CCccE
Confidence 3578999999998 6554330 111101100 012367888888776666343 37899
Q ss_pred EEECCCCceeeeec--------------cCCCceeEEE---EccCCCeEEEEecCCCCCCCCeEEEEeCCC------eeE
Q 000736 206 VWERDSGTLQASSE--------------LKAFMGAVLE---WMPSGANIAAVYDRKSENKCPSIVFYERNG------LER 262 (1323)
Q Consensus 206 VWd~~~G~l~~t~e--------------~~~~~v~sla---wsPdG~lIAs~s~d~~~~~~~~V~~~e~nG------l~~ 262 (1323)
+++..+-....... +....+...+ -...+..|+.+.. ..|.+|+.++ ...
T Consensus 60 ~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~k-------k~i~i~~~~~~~~~f~~~~ 132 (275)
T PF00780_consen 60 VYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVK-------KKILIYEWNDPRNSFSKLL 132 (275)
T ss_pred EEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEEC-------CEEEEEEEECCccccccee
Confidence 99874333222110 1111223333 2223345555543 3688777443 234
Q ss_pred EEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeC
Q 000736 263 SSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1323)
Q Consensus 263 ~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V~LW~~~n 306 (1323)
.+|.++ ..+.+++|. ++.|+++..++ ..+.|..+
T Consensus 133 ke~~lp----~~~~~i~~~--~~~i~v~~~~~----f~~idl~~ 166 (275)
T PF00780_consen 133 KEISLP----DPPSSIAFL--GNKICVGTSKG----FYLIDLNT 166 (275)
T ss_pred EEEEcC----CCcEEEEEe--CCEEEEEeCCc----eEEEecCC
Confidence 555553 458899999 67788887776 77777764
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=88.81 E-value=66 Score=39.28 Aligned_cols=224 Identities=14% Similarity=0.180 Sum_probs=97.0
Q ss_pred CCcEEEEeeccccccCCCCEEEEEECC----CCceeeeecc-----CCCce--eEEEEccCCCeEEEEecCCCCCCCCeE
Q 000736 184 DGKYFATLSEFCNSSKLHKRLKVWERD----SGTLQASSEL-----KAFMG--AVLEWMPSGANIAAVYDRKSENKCPSI 252 (1323)
Q Consensus 184 DG~~lAtvss~d~~~~~d~~IrVWd~~----~G~l~~t~e~-----~~~~v--~slawsPdG~lIAs~s~d~~~~~~~~V 252 (1323)
+.++|. +.+.. ..+|.|.|.. .-++..+-|+ ..+.. +.+---|+|+.+.|+=.++.++.+..+
T Consensus 86 ~Rr~Li-~PgL~-----SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf 159 (461)
T PF05694_consen 86 ERRYLI-LPGLR-----SSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGF 159 (461)
T ss_dssp -S-EEE-EEBTT-----T--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EE
T ss_pred cCCcEE-eeeec-----cCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcE
Confidence 456787 66653 3678888874 3356666554 11221 344456899988877555444456677
Q ss_pred EEEeCCCe-eEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCC-----------------CCeEEEEEeeCCeeEEEeE
Q 000736 253 VFYERNGL-ERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEE-----------------YDSVKICFFSNNHWYLKYE 314 (1323)
Q Consensus 253 ~~~e~nGl-~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~-----------------~~~V~LW~~~n~~wylkq~ 314 (1323)
.+.+.++. ..+.+.........-+.+-|.|--+++.+..-..+ ++++.+||+...+ ++|+
T Consensus 160 ~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~--~~Q~ 237 (461)
T PF05694_consen 160 VLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK--LLQT 237 (461)
T ss_dssp EEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE--EEEE
T ss_pred EEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc--EeeE
Confidence 77776532 23333322222234568889998888888753321 4599999998764 5788
Q ss_pred EEEecCC--c--EEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeE---EEEeCCEEEEeecCCcCCCCCceeee
Q 000736 315 IRYLRRD--G--IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTA---LVIDGSKILVTPLSLSLMPPPMYLFS 387 (1323)
Q Consensus 315 l~~~~~~--~--~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v---~viDg~~l~lt~l~~~~vPppm~~~~ 387 (1323)
+...... + +...|+|+...-++-.-.++++ |.|--. +.+.- .||+-... +...|.+|+ |- +.
T Consensus 238 idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i----~~~~k~--~~g~W~a~kVi~ip~~---~v~~~~lp~-ml-~~ 306 (461)
T PF05694_consen 238 IDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSI----WRFYKD--DDGEWAAEKVIDIPAK---KVEGWILPE-ML-KP 306 (461)
T ss_dssp EES-TTEEEEEEEEE-SSTT--EEEEEEE--EEE----EEEEE---ETTEEEEEEEEEE--E---E--SS---G-GG-GG
T ss_pred EecCCCCCceEEEEecCCCCccceEEEEeccceE----EEEEEc--CCCCeeeeEEEECCCc---ccCcccccc-cc-cc
Confidence 8765433 2 4566778776543322222222 233221 11111 12221111 122344432 21 11
Q ss_pred e-cCCCCEEEEEEecCCCCCEE-EEEECCCcEEEEECCCCCcc
Q 000736 388 L-KFPTAVTEMAFYSKSSKNCL-AAILSDGCLCVVDLPAPDML 428 (1323)
Q Consensus 388 l-~~~~~V~~VaFSpdg~~~~L-As~s~Dgti~lw~~~~~~~~ 428 (1323)
+ ..+.-|+++..|.|. +.| .+.--+|.|+.||+.++..+
T Consensus 307 ~~~~P~LitDI~iSlDD--rfLYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 307 FGAVPPLITDILISLDD--RFLYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp G-EE------EEE-TTS---EEEEEETTTTEEEEEE-SSTTS-
T ss_pred cccCCCceEeEEEccCC--CEEEEEcccCCcEEEEecCCCCCC
Confidence 1 235668899999998 554 55667899999999876444
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.63 E-value=4.1 Score=43.85 Aligned_cols=92 Identities=21% Similarity=0.160 Sum_probs=61.3
Q ss_pred CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhcCCH-----------HHHHHHHHHhCCHHHHHHHHhhcC------CCH
Q 000736 984 TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL-----------EKAMKAYRASGNWSGVLTVAGLLK------LGK 1046 (1323)
Q Consensus 984 ~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~-----------~kAl~~y~~ag~W~~al~lA~~l~------~~~ 1046 (1323)
..++..+..+...|+|+...|++++|..+|.++-++ -.-++..+..++|..+.....+.. -+.
T Consensus 30 ~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~ 109 (177)
T PF10602_consen 30 LGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDW 109 (177)
T ss_pred cchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchH
Confidence 467789999999999999999999999999998655 223456667788888765544321 111
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000736 1047 DEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1323)
Q Consensus 1047 ~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1323)
+....+-.-.|=.....|+|.+||++|++
T Consensus 110 ~~~nrlk~~~gL~~l~~r~f~~AA~~fl~ 138 (177)
T PF10602_consen 110 ERRNRLKVYEGLANLAQRDFKEAAELFLD 138 (177)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHc
Confidence 22222222223333456778888888777
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.43 E-value=59 Score=40.73 Aligned_cols=30 Identities=30% Similarity=0.411 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 000736 1047 DEVAKLAQELCEELQALGKPGEAAKIALDY 1076 (1323)
Q Consensus 1047 ~~~~~l~~~la~~L~~~~~~~eAa~i~~~y 1076 (1323)
+++..+-..||=.|+-+|+-+||-.+|.+.
T Consensus 221 ~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 221 EELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 466778888999999999999999999884
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=88.17 E-value=8.5 Score=44.82 Aligned_cols=77 Identities=13% Similarity=0.018 Sum_probs=41.6
Q ss_pred hccccHHHHhcCHHHHHHHHHHc---CCCc----HHHHHHHHHHHhcchHHHHhhc-----CCcHHHHHHHHHHHHHHhc
Q 000736 935 LMRYTIDLRLQRFENALKHIVSM---GDSY----HADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSD 1002 (1323)
Q Consensus 935 ~~~~~Id~~L~rye~Al~~l~~~---g~~~----~~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~ 1002 (1323)
...+.+...+|+|++|+..|.++ .+++ ...++-+ ... +.|++|++.+ .+|.... ...|...+..
T Consensus 102 ~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l-~~~-g~~~eA~~~~~~al~~~P~~~~--~~~~~~l~~~ 177 (296)
T PRK11189 102 NYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIAL-YYG-GRYELAQDDLLAFYQDDPNDPY--RALWLYLAES 177 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHC-CCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHc
Confidence 34456777888888888887765 3322 1222222 345 6777777766 2332211 1122223344
Q ss_pred ccCHHHHHHHHHh
Q 000736 1003 VKCFEDAATTYFC 1015 (1323)
Q Consensus 1003 ~~~~~eAa~~y~~ 1015 (1323)
.+++++|...|.+
T Consensus 178 ~~~~~~A~~~l~~ 190 (296)
T PRK11189 178 KLDPKQAKENLKQ 190 (296)
T ss_pred cCCHHHHHHHHHH
Confidence 5667777777644
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=88.09 E-value=3.9 Score=53.20 Aligned_cols=87 Identities=10% Similarity=0.031 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHhcCCH----HHHH----HHHHHhCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHH
Q 000736 990 EQVLEAWADHLSDVKCFEDAATTYFCCSSL----EKAM----KAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEEL 1060 (1323)
Q Consensus 990 ~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~----~kAl----~~y~~ag~W~~al~lA~~l-~~~~~~~~~l~~~la~~L 1060 (1323)
.+.+...|+-+...+.+++|...+..+-++ ..|. .+..+.+..++|+..++++ ..+|+. .+....+|..|
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~-~~~~~~~a~~l 164 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS-AREILLEAKSW 164 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC-HHHHHHHHHHH
Confidence 456667788888888888888888877532 3343 3444567788887777653 223333 35667889999
Q ss_pred HHcCChHHHHHHHHHhc
Q 000736 1061 QALGKPGEAAKIALDYC 1077 (1323)
Q Consensus 1061 ~~~~~~~eAa~i~~~yl 1077 (1323)
.+.|+|++|..+|.+-+
T Consensus 165 ~~~g~~~~A~~~y~~~~ 181 (694)
T PRK15179 165 DEIGQSEQADACFERLS 181 (694)
T ss_pred HHhcchHHHHHHHHHHH
Confidence 99999999999999854
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=88.02 E-value=2.8 Score=48.03 Aligned_cols=97 Identities=13% Similarity=0.060 Sum_probs=52.9
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHhcchHHHHhhcCCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhcCCHHHHHHHH
Q 000736 947 FENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAY 1026 (1323)
Q Consensus 947 ye~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y 1026 (1323)
|+.|..++.+.|. +++|++. |+..++.|.+......++-..|+.+...++|++|...|.+ +++
T Consensus 146 Y~~A~~l~~~~~~--y~~Ai~a-------f~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~------vv~-- 208 (263)
T PRK10803 146 YNAAIALVQDKSR--QDDAIVA-------FQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFAS------VVK-- 208 (263)
T ss_pred HHHHHHHHHhcCC--HHHHHHH-------HHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH------HHH--
Confidence 6666666555444 5655533 3334455544444556666667766666666666554332 111
Q ss_pred HHhCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000736 1027 RASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1323)
Q Consensus 1027 ~~ag~W~~al~lA~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1323)
.++.+ ....+.+..++..+.+.|++.+|..+|.+
T Consensus 209 --------------~yP~s-~~~~dAl~klg~~~~~~g~~~~A~~~~~~ 242 (263)
T PRK10803 209 --------------NYPKS-PKAADAMFKVGVIMQDKGDTAKAKAVYQQ 242 (263)
T ss_pred --------------HCCCC-cchhHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 22211 12234555566666677777777777665
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=88.00 E-value=3.1 Score=54.99 Aligned_cols=93 Identities=10% Similarity=0.060 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChH
Q 000736 988 KMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPG 1067 (1323)
Q Consensus 988 ~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~ag~W~~al~lA~~l~~~~~~~~~l~~~la~~L~~~~~~~ 1067 (1323)
-...++...+++..++.-+..=|.+|.+.|++++|..+|.++-.| ++++ ...+..+|-.+.+. +..
T Consensus 101 ~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~------------D~~n-~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 101 IVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA------------DRDN-PEIVKKLATSYEEE-DKE 166 (906)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc------------Cccc-HHHHHHHHHHHHHh-hHH
Confidence 344555555565555544444555666666666666665443332 2333 25677777777777 888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHH
Q 000736 1068 EAAKIALDYCGDVTNGISLLIDARDWEEALRVAF 1101 (1323)
Q Consensus 1068 eAa~i~~~yl~d~e~Av~~~i~~~~w~eA~rla~ 1101 (1323)
.|.+++.+ ||..|+.-+++.++..+=.
T Consensus 167 KA~~m~~K-------AV~~~i~~kq~~~~~e~W~ 193 (906)
T PRK14720 167 KAITYLKK-------AIYRFIKKKQYVGIEEIWS 193 (906)
T ss_pred HHHHHHHH-------HHHHHHhhhcchHHHHHHH
Confidence 89888766 8999999999998887543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=87.66 E-value=8.9 Score=50.84 Aligned_cols=117 Identities=12% Similarity=0.045 Sum_probs=72.9
Q ss_pred HHHHHhcchHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHhh-
Q 000736 968 LMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGL- 1041 (1323)
Q Consensus 968 ~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~ag~W~~al~lA~~- 1041 (1323)
++.+. +.+++|.+.| .|| .-..+++.||.+|..+ +.++|..||.+ |+..|+..+++.+++.+=..
T Consensus 125 ~Ydk~-g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~KA~~m~~K------AV~~~i~~kq~~~~~e~W~k~ 195 (906)
T PRK14720 125 AYAKL-NENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKEKAITYLKK------AIYRFIKKKQYVGIEEIWSKL 195 (906)
T ss_pred HHHHc-CChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHHHHHHHHHH------HHHHHHhhhcchHHHHHHHHH
Confidence 34455 6666666665 354 3456889999999999 99999999864 78888877776666553222
Q ss_pred cCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHH
Q 000736 1042 LKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAF 1101 (1323)
Q Consensus 1042 l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~e~Av~~~i~~~~w~eA~rla~ 1101 (1323)
+...+++...+.+-+-..+.+.+ +..++.+++. -..+|-+.++|++++.+.+
T Consensus 196 ~~~~~~d~d~f~~i~~ki~~~~~-~~~~~~~~~~-------l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 196 VHYNSDDFDFFLRIERKVLGHRE-FTRLVGLLED-------LYEPYKALEDWDEVIYILK 247 (906)
T ss_pred HhcCcccchHHHHHHHHHHhhhc-cchhHHHHHH-------HHHHHhhhhhhhHHHHHHH
Confidence 22344555444444444444434 4444444333 4567778888888876544
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=87.22 E-value=24 Score=41.72 Aligned_cols=109 Identities=19% Similarity=0.211 Sum_probs=64.0
Q ss_pred ceeEEeeecCCCEEEEEeCCCc------EEEEecccccccccceeeccccccccccCCC-CC--------CEEEEEEecC
Q 000736 22 ILQFSALDIEQNRLFFASSANN------IYSAQLSSFQNERASIKTAISAEIEHIDLEP-GD--------SITAFDYLME 86 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~------i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~--------~V~~v~~spd 86 (1323)
.+.++++|++++.+|.+|+++. ++..++....+. ...+.- ...+++.. .+ -.-+|++.++
T Consensus 21 GlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~L~~~~G~~~~~~~~D~Egi~~~~~ 95 (326)
T PF13449_consen 21 GLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGG-IGGVTI----LDMIPLRDPDGQPFPKNGLDPEGIAVPPD 95 (326)
T ss_pred cEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCC-ccceEe----ccceeccCCCCCcCCcCCCChhHeEEecC
Confidence 6788999999999999999998 887777310110 001110 01111111 12 2337888666
Q ss_pred CCEEEEEeCCC-------cEEEEeCCCCeEEE------e--------c-eecCcEEEEEEcCCCCeEEEEeC
Q 000736 87 KEALIVGTSSG-------LLLLHSVDGNATEV------V--------G-RVEGGVRFISPSPDGDLLGVTTG 136 (1323)
Q Consensus 87 g~~La~as~dG-------~I~lw~~~~~~~e~------v--------g-~~~~~I~~~awSPDG~~LA~~s~ 136 (1323)
|..++ +++.+ .|.-++.++...+. . + ....|..+++++|||+.|.++.+
T Consensus 96 g~~~i-s~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 96 GSFWI-SSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred CCEEE-EeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 65554 45544 56667776532211 1 1 13568999999999997777654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.19 E-value=34 Score=45.05 Aligned_cols=78 Identities=10% Similarity=0.069 Sum_probs=49.6
Q ss_pred cccHHHHhcCHHHHHHHHHHcC---CC----cHHHHHHHHHHHhcchHHHHhhc------CCcHHHHHHHHHHHHHHhcc
Q 000736 937 RYTIDLRLQRFENALKHIVSMG---DS----YHADCLNLMKKYAQLFPLGLKLI------TDPAKMEQVLEAWADHLSDV 1003 (1323)
Q Consensus 937 ~~~Id~~L~rye~Al~~l~~~g---~~----~~~~ale~~~~~~~ly~~AL~L~------~d~~~~~~i~~~~A~~L~~~ 1003 (1323)
-+-|-++=|||.+|+..|++-- .+ ....| ..+... +.|..|++.| ..+..-..|+...|.-+...
T Consensus 652 IgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNla-h~~~e~-~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~ 729 (1018)
T KOG2002|consen 652 IGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLA-HCYVEQ-GQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEA 729 (1018)
T ss_pred hhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHH-HHHHHH-HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHh
Confidence 3468889999999999998741 10 11111 123455 6677777777 13444567777777777777
Q ss_pred cCHHHHHHHHHhc
Q 000736 1004 KCFEDAATTYFCC 1016 (1323)
Q Consensus 1004 ~~~~eAa~~y~~a 1016 (1323)
+.|.+|-..-..|
T Consensus 730 ~~~~eak~~ll~a 742 (1018)
T KOG2002|consen 730 GKLQEAKEALLKA 742 (1018)
T ss_pred hhHHHHHHHHHHH
Confidence 7777776655554
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=87.19 E-value=1.7 Score=48.34 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=48.5
Q ss_pred EEEEEEccCC-CeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEee
Q 000736 275 VELLKWNCMS-DLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTT 353 (1323)
Q Consensus 275 V~~laWSpDg-~~LA~~~~d~~~~~V~LW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~ 353 (1323)
|.+++=.|.- .++++|+.|+ .|-|||..|.. |-...+..+......+.|||..|..|.+.+.||.+ |.|+.
T Consensus 182 v~~l~~hp~qq~~v~cgt~dg---~~~l~d~rn~~-~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGsl----w~wda 253 (319)
T KOG4714|consen 182 VTALCSHPAQQHLVCCGTDDG---IVGLWDARNVA-MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSL----WHWDA 253 (319)
T ss_pred chhhhCCcccccEEEEecCCC---eEEEEEccccc-chHHHHHHhhhhhhheeccCCCchheeEecCCCcE----EEEcC
Confidence 6677777754 4667777777 89999998852 11111222222337799999999989998899987 56654
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.13 E-value=7.2 Score=43.48 Aligned_cols=43 Identities=23% Similarity=0.112 Sum_probs=29.2
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000736 1032 WSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1323)
Q Consensus 1032 W~~al~lA~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1323)
+++++.+-.+-+ ....--+++..++..|...++|.||+..+++
T Consensus 133 Yqralavve~~d-r~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 133 YQRALAVVEEDD-RDQMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred HHHHHHHHhccc-hHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 345555554422 1112247888899999999999999998887
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.86 E-value=6.5 Score=46.65 Aligned_cols=127 Identities=14% Similarity=0.108 Sum_probs=81.8
Q ss_pred cchHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhcC--------CHHHHHHHHHHhCCHHHHHHHHh
Q 000736 974 QLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCS--------SLEKAMKAYRASGNWSGVLTVAG 1040 (1323)
Q Consensus 974 ~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag--------~~~kAl~~y~~ag~W~~al~lA~ 1040 (1323)
+.|.+||.+. .++... +.+..-|.-|..-++.++|+++|..|- .|+.-++||...|..++|+.+|+
T Consensus 314 K~~~rAL~~~eK~I~~~~r~~-~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An 392 (564)
T KOG1174|consen 314 KKFERALNFVEKCIDSEPRNH-EALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALAN 392 (564)
T ss_pred hhHHHHHHHHHHHhccCcccc-hHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 3477777665 344444 445577899999999999999998775 45788999999999999999997
Q ss_pred hc----CCCHHHHHHHHHHHHHHHHH-cCChHHHHHHHHH-------hcCCHHHHHHHHHHhcCHHHHHHHHHhcC
Q 000736 1041 LL----KLGKDEVAKLAQELCEELQA-LGKPGEAAKIALD-------YCGDVTNGISLLIDARDWEEALRVAFMHR 1104 (1323)
Q Consensus 1041 ~l----~~~~~~~~~l~~~la~~L~~-~~~~~eAa~i~~~-------yl~d~e~Av~~~i~~~~w~eA~rla~~~~ 1104 (1323)
.. +-+...++ |.- +..+.. -..-+.|.++|.+ |++-+-.-.+++..-+..++++.|.++|-
T Consensus 393 ~~~~~~~~sA~~Lt-L~g--~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L 465 (564)
T KOG1174|consen 393 WTIRLFQNSARSLT-LFG--TLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHL 465 (564)
T ss_pred HHHHHhhcchhhhh-hhc--ceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence 52 21111111 110 011111 1122344444444 55556666677777788899999888764
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=86.63 E-value=20 Score=39.82 Aligned_cols=55 Identities=15% Similarity=0.088 Sum_probs=33.0
Q ss_pred HHHHhcCCHHHHHHHHHHhCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000736 1011 TTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1323)
Q Consensus 1011 ~~y~~ag~~~kAl~~y~~ag~W~~al~lA~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1323)
..|...|++++|+..|..+ +. ..+-++ ...+....++..+...|++++|..++..
T Consensus 174 ~~~~~~g~~~~A~~~~~~a------l~---~~p~~~-~~~~a~~~l~~~~~~lg~~~~A~~~~~~ 228 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETV------VE---NYPDTP-ATEEALARLVEAYLKLGLKDLAQDAAAV 228 (235)
T ss_pred HHHHHcCChHHHHHHHHHH------HH---HCCCCc-chHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4555666666666555332 21 112111 2245666888888888888888887666
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=85.75 E-value=80 Score=37.04 Aligned_cols=139 Identities=19% Similarity=0.277 Sum_probs=78.3
Q ss_pred CCEEEEEeC----------CCcEEEEeCCCC-----eEEEec--eecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCce
Q 000736 87 KEALIVGTS----------SGLLLLHSVDGN-----ATEVVG--RVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDL 149 (1323)
Q Consensus 87 g~~La~as~----------dG~I~lw~~~~~-----~~e~vg--~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~ 149 (1323)
.+.|++|+. .|.|.++++... +++.+. .++++|.+++-- +|. |+.+.+ ++|.++....+.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~g-~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAVG-NKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEET-TEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEeec-CEEEEEEccCcc
Confidence 467777764 289999998773 565432 357889887766 444 666655 478776533222
Q ss_pred -eeeeeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEE--EEECCCCc-eeeeec-cCCCc
Q 000736 150 -LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLK--VWERDSGT-LQASSE-LKAFM 224 (1323)
Q Consensus 150 -~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~Ir--VWd~~~G~-l~~t~e-~~~~~ 224 (1323)
+........ ...+.++...+| +++ +|... +.+. -|+. ++. +..... ....+
T Consensus 119 ~l~~~~~~~~--------------~~~i~sl~~~~~--~I~-vgD~~------~sv~~~~~~~-~~~~l~~va~d~~~~~ 174 (321)
T PF03178_consen 119 TLLKKAFYDS--------------PFYITSLSVFKN--YIL-VGDAM------KSVSLLRYDE-ENNKLILVARDYQPRW 174 (321)
T ss_dssp SEEEEEEE-B--------------SSSEEEEEEETT--EEE-EEESS------SSEEEEEEET-TTE-EEEEEEESS-BE
T ss_pred cchhhheecc--------------eEEEEEEecccc--EEE-EEEcc------cCEEEEEEEc-cCCEEEEEEecCCCcc
Confidence 222211111 124567776644 777 76432 3344 4566 444 443332 34556
Q ss_pred eeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000736 225 GAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1323)
Q Consensus 225 v~slawsPdG~lIAs~s~d~~~~~~~~V~~~e~n 258 (1323)
+.++.+=+|++.++.+..+ +.|.++..+
T Consensus 175 v~~~~~l~d~~~~i~~D~~------gnl~~l~~~ 202 (321)
T PF03178_consen 175 VTAAEFLVDEDTIIVGDKD------GNLFVLRYN 202 (321)
T ss_dssp EEEEEEE-SSSEEEEEETT------SEEEEEEE-
T ss_pred EEEEEEecCCcEEEEEcCC------CeEEEEEEC
Confidence 7888998888877766654 457777644
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.63 E-value=1.3e+02 Score=39.17 Aligned_cols=175 Identities=18% Similarity=0.157 Sum_probs=93.2
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcE--EEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeee
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLL--LLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYE 152 (1323)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I--~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~~d~~~e 152 (1323)
+..+..+.|+|||+.++..+.+|.. .+|-...+. ....+..+|....|||+|+.++....++..+. +.. .
T Consensus 59 ~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g--~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~---~~~---~ 130 (620)
T COG1506 59 GGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG--LITKTAFGVSDARWSPDGDRIAFLTAEGASKR---DGG---D 130 (620)
T ss_pred CCcccccccCCCCCEEEEEeccCCCcceEEEEecCC--ceeeeecccccceeCCCCCeEEEEeccccccc---CCc---e
Confidence 6788999999999999998855542 333322110 23334567889999999999998544432211 111 0
Q ss_pred eeecccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeeccCCCceeEEEEcc
Q 000736 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP 232 (1323)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~~~~~v~slawsP 232 (1323)
.... .-..+-|.++|. ....+.+.|. ++.. .........+...+|.+
T Consensus 131 -~~~~-----------------~~~~~~~~~~g~-------------~~~~l~~~d~-~~~~-~~~~~~~~~~~~~~~~~ 177 (620)
T COG1506 131 -HLFV-----------------DRLPVWFDGRGG-------------ERSDLYVVDI-ESKL-IKLGLGNLDVVSFATDG 177 (620)
T ss_pred -eeee-----------------cccceeecCCCC-------------cccceEEEcc-Cccc-ccccCCCCceeeeeeCC
Confidence 0000 002333444440 1233444454 2211 11222334456777777
Q ss_pred CCCeEEEEecCCC-CCCCCeEEEEe-CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccC
Q 000736 233 SGANIAAVYDRKS-ENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE 294 (1323)
Q Consensus 233 dG~lIAs~s~d~~-~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~~~d~ 294 (1323)
+++.+++...+.. ..-.....++. .+|.... + .+....+..+.|.+||+.++..+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~gk~~~~~~~~~ 237 (620)
T COG1506 178 DGRLVASIRLDDDADPWVTNLYVLIEGNGELES---L-TPGEGSISKLAFDADGKSIALLGTES 237 (620)
T ss_pred CCceeEEeeeccccCCceEeeEEEecCCCceEE---E-cCCCceeeeeeeCCCCCeeEEeccCC
Confidence 7888888876532 00011122221 2332211 1 12345688999999999777766554
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=85.54 E-value=86 Score=37.20 Aligned_cols=248 Identities=8% Similarity=0.032 Sum_probs=115.9
Q ss_pred EEeeecCCCEEEEEeCC----------CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEecCCCEEEEE-
Q 000736 25 FSALDIEQNRLFFASSA----------NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVG- 93 (1323)
Q Consensus 25 ~~~~d~~~~~l~~~s~~----------~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~v~~spdg~~La~a- 93 (1323)
.+++.+|+..+|+++.- --|-.||. .+-.....|. ||..-+ ++.......+++|+||+.+.+.
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~--~TL~~~~EI~-iP~k~R---~~~~~~~~~~~ls~dgk~~~V~N 113 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDT--QTLSPTGEIE-IPPKPR---AQVVPYKNMFALSADGKFLYVQN 113 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEET--TTTEEEEEEE-ETTS-B-----BS--GGGEEE-TTSSEEEEEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEec--CcCcccceEe-cCCcch---heecccccceEEccCCcEEEEEc
Confidence 36788999999998541 13678888 3333222222 232200 1111234557889999988765
Q ss_pred -eCCCcEEEEeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEee--cCceeeeeeecccCCCceeccCcc
Q 000736 94 -TSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH--DWDLLYENPLEELAEGFDVHEPEL 169 (1323)
Q Consensus 94 -s~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~--~~d~~~e~~l~~~~~~~~Vs~tqf 169 (1323)
+=.-.|.+.|+..+++- .+. ..+....--+.|+ -+.+..+||++...+- +++.... . ...|
T Consensus 114 ~TPa~SVtVVDl~~~kvv~ei~-~PGC~~iyP~~~~--~F~~lC~DGsl~~v~Ld~~Gk~~~~-~-----------t~~F 178 (342)
T PF06433_consen 114 FTPATSVTVVDLAAKKVVGEID-TPGCWLIYPSGNR--GFSMLCGDGSLLTVTLDADGKEAQK-S-----------TKVF 178 (342)
T ss_dssp ESSSEEEEEEETTTTEEEEEEE-GTSEEEEEEEETT--EEEEEETTSCEEEEEETSTSSEEEE-E-----------EEES
T ss_pred cCCCCeEEEEECCCCceeeeec-CCCEEEEEecCCC--ceEEEecCCceEEEEECCCCCEeEe-e-----------cccc
Confidence 23345888899887652 222 2343444444444 4777888888765432 2333211 0 0112
Q ss_pred ccCCCC-eEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecc---------CCCc----eeEEEEccCCC
Q 000736 170 SSSFSF-KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL---------KAFM----GAVLEWMPSGA 235 (1323)
Q Consensus 170 ~~~~~~-i~~isWspDG~~lAtvss~d~~~~~d~~IrVWd~~~G~l~~t~e~---------~~~~----v~slawsPdG~ 235 (1323)
...++. ...-.++.++..+..++. .+.|+--|. +|.......+ ..+| -.-+|+++..+
T Consensus 179 ~~~~dp~f~~~~~~~~~~~~~F~Sy-------~G~v~~~dl-sg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~ 250 (342)
T PF06433_consen 179 DPDDDPLFEHPAYSRDGGRLYFVSY-------EGNVYSADL-SGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASG 250 (342)
T ss_dssp STTTS-B-S--EEETTTTEEEEEBT-------TSEEEEEEE-TTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTT
T ss_pred CCCCcccccccceECCCCeEEEEec-------CCEEEEEec-cCCcccccCcccccCccccccCcCCcceeeeeeccccC
Confidence 222222 223455554433322432 245554444 3322111110 0111 13455555444
Q ss_pred eEEEEecCC----CCCCCCeEEEEe-CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEE-E-ccCCCCeEEEEEeeCCe
Q 000736 236 NIAAVYDRK----SENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAV-V-RFEEYDSVKICFFSNNH 308 (1323)
Q Consensus 236 lIAs~s~d~----~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA~~-~-~d~~~~~V~LW~~~n~~ 308 (1323)
.|...-..+ +++....|..+| .++.+...+.+. ..+.+|+-|-|.+=+..+ + .++ .+.+||..+.+
T Consensus 251 rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~----~~~~Si~Vsqd~~P~L~~~~~~~~---~l~v~D~~tGk 323 (342)
T PF06433_consen 251 RLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE----HPIDSIAVSQDDKPLLYALSAGDG---TLDVYDAATGK 323 (342)
T ss_dssp EEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE----EEESEEEEESSSS-EEEEEETTTT---EEEEEETTT--
T ss_pred eEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC----CccceEEEccCCCcEEEEEcCCCC---eEEEEeCcCCc
Confidence 443321111 122233465666 345555544442 346689999988843333 2 344 79999988764
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.45 E-value=17 Score=41.25 Aligned_cols=93 Identities=19% Similarity=0.137 Sum_probs=55.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhCC-------------------HHHHHHHHhhcCCCHHHH-HHHHHHHHHHHHHcCC
Q 000736 1006 FEDAATTYFCCSSLEKAMKAYRASGN-------------------WSGVLTVAGLLKLGKDEV-AKLAQELCEELQALGK 1065 (1323)
Q Consensus 1006 ~~eAa~~y~~ag~~~kAl~~y~~ag~-------------------W~~al~lA~~l~~~~~~~-~~l~~~la~~L~~~~~ 1065 (1323)
...|++.|...|+++.|++.....+. .++.++.+.+. +++.+ ..||...........+
T Consensus 111 ~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i--ded~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 111 LLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQI--DEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred HHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--chHHHHHHHHHHHHHHhccchh
Confidence 34577888888888888776655332 22223333322 33322 2345544444555677
Q ss_pred hHHHHHHHHHhcCCH-------HHHHHHHHHhcCHHHHHHHH
Q 000736 1066 PGEAAKIALDYCGDV-------TNGISLLIDARDWEEALRVA 1100 (1323)
Q Consensus 1066 ~~eAa~i~~~yl~d~-------e~Av~~~i~~~~w~eA~rla 1100 (1323)
+.+|--+|.++.+.+ ..-.-+++..++|+||--+.
T Consensus 189 ~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL 230 (299)
T KOG3081|consen 189 IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLL 230 (299)
T ss_pred hhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHH
Confidence 999999999965522 12234566778899997654
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.34 E-value=2.5 Score=55.25 Aligned_cols=90 Identities=22% Similarity=0.239 Sum_probs=64.2
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeE--EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeec-CceeeeeeecccCCCce
Q 000736 87 KEALIVGTSSGLLLLHSVDGNAT--EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFD 163 (1323)
Q Consensus 87 g~~La~as~dG~I~lw~~~~~~~--e~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t~~-~d~~~e~~l~~~~~~~~ 163 (1323)
+-.++++++.|.|.+.|..+... -.-.+..++|++++||-||.+|+.|-++|.|.+|+.. .+++.....+..+
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap---- 174 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAP---- 174 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCc----
Confidence 45689999999999877766322 1112346789999999999999999999999999744 3555555443322
Q ss_pred eccCccccCCCCeEEEEEecCCcEEE
Q 000736 164 VHEPELSSSFSFKSPISWRGDGKYFA 189 (1323)
Q Consensus 164 Vs~tqf~~~~~~i~~isWspDG~~lA 189 (1323)
..++..+-|..++..+.
T Consensus 175 ---------~t~vi~v~~t~~nS~ll 191 (1206)
T KOG2079|consen 175 ---------VTGVIFVGRTSQNSKLL 191 (1206)
T ss_pred ---------cceEEEEEEeCCCcEEE
Confidence 13567788888887554
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.23 E-value=4.1 Score=46.68 Aligned_cols=78 Identities=22% Similarity=0.200 Sum_probs=52.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHH
Q 000736 1008 DAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLL 1087 (1323)
Q Consensus 1008 eAa~~y~~ag~~~kAl~~y~~ag~W~~al~lA~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~e~Av~~~ 1087 (1323)
.-+.+|.+.|.++.|++....+- .+++. ....+.+|+-.+..+|+|.+|++.|.+ |+++.
T Consensus 120 NRAAAy~~Lg~~~~AVkDce~Al------------~iDp~-yskay~RLG~A~~~~gk~~~A~~aykK-------aLeld 179 (304)
T KOG0553|consen 120 NRAAAYSKLGEYEDAVKDCESAL------------SIDPH-YSKAYGRLGLAYLALGKYEEAIEAYKK-------ALELD 179 (304)
T ss_pred HHHHHHHHhcchHHHHHHHHHHH------------hcChH-HHHHHHHHHHHHHccCcHHHHHHHHHh-------hhccC
Confidence 33456777777777766553332 12332 245788899999999999999998777 44444
Q ss_pred HHhcCHHHHHHHHHhcCC
Q 000736 1088 IDARDWEEALRVAFMHRR 1105 (1323)
Q Consensus 1088 i~~~~w~eA~rla~~~~~ 1105 (1323)
=...-|.+.+++|++.-+
T Consensus 180 P~Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 180 PDNESYKSNLKIAEQKLN 197 (304)
T ss_pred CCcHHHHHHHHHHHHHhc
Confidence 444478888888887543
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.18 E-value=4.2 Score=49.52 Aligned_cols=64 Identities=16% Similarity=0.259 Sum_probs=44.7
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe
Q 000736 79 TAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT 144 (1323)
Q Consensus 79 ~~v~~spdg~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~d~tV~l~t 144 (1323)
.+++=--+| .+|+||.+|+|+|||.-+..-. -+.+....|.-+.-+.||++|+ ||.+..+.+++
T Consensus 434 sc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil-~Tc~tyLlLi~ 498 (644)
T KOG2395|consen 434 SCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWIL-ATCKTYLLLID 498 (644)
T ss_pred ceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEE-EecccEEEEEE
Confidence 334333344 7899999999999998553322 2223456899999999999986 55566777764
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.96 E-value=3.5 Score=49.98 Aligned_cols=22 Identities=23% Similarity=0.129 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHH
Q 000736 1052 LAQELCEELQALGKPGEAAKIA 1073 (1323)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~ 1073 (1323)
...-||+...++|+-.+|-..+
T Consensus 410 ~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 410 GWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHHHHHHHhCchHHHHHHH
Confidence 4444555555555555544443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 1e-09
Identities = 86/625 (13%), Positives = 181/625 (28%), Gaps = 166/625 (26%)
Query: 466 HHGPRHSNYFRGAT--LNEDGLLGFYAQEI--ELACS--EDHVQGLLTCAGWHAKVSTQI 519
HH H ++ G +D +L + C +D + +L+ + ++
Sbjct: 1 HHHHHHMDFETGEHQYQYKD-ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD 59
Query: 520 PLEG---LVIAIAPNNAKKYSAFLQ--------FHGGKIS-EYMSRVGLTGGALTHDDAS 567
+ G L + + F++ F I E +T + D
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 568 F--PSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLHV-----SGK--IVCNNCSSFSFYSK 618
+ NV + L+ L L + + SGK + + C S+ K
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 619 --------SAGQAMS-HLILATKQNLLFIVDISDILHGELALKYENFTHVGNRR------ 663
+ S +L Q LL+ +D + + + + H
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 664 -KEENISYI---NIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLT---SIVNA 716
K + N+ AK NL C + L+ T + +
Sbjct: 240 SKPYENCLLVLLNVQN--AKAWNAF--------------NLSC---KILLTTRFKQVTDF 280
Query: 717 LIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASE--FVRQVN-NLSYITEFVCAIN 773
L H + +DH + ++ ++ + V N
Sbjct: 281 LS--------AATTTH-----ISLDHHSM-TLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 774 NENITETLYKKFQFLSLPCREEFKDLPA--KDFKASECNKVSSVLLAIRKALEEKV---- 827
+ LS+ E +D A ++K C+K+++++ + LE
Sbjct: 327 P-----------RRLSI-IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 828 -------PES---PSRELCIL-TTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYP 876
P S P+ L ++ + +SD + L + ++ + + +S P
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK-----QPKESTISIP 429
Query: 877 SAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKE------FLPY------ 924
S L+ + L + A++ + + Y N+ + P + +
Sbjct: 430 SI--YLELKVKLENEYALHRSIVDHY--NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485
Query: 925 -LQELESMPPLLMRYTIDLR----------------------LQRFENALKHIVSMGDSY 961
+ + + + D R LQ+ + +I Y
Sbjct: 486 HPERMTLFRMVFL----DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541
Query: 962 HADCLNLMKKYAQLFPLGLKLITDP 986
+N + + L + LI
Sbjct: 542 ER-LVNAILDF--LPKIEENLICSK 563
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 7e-06
Identities = 81/609 (13%), Positives = 151/609 (24%), Gaps = 208/609 (34%)
Query: 803 DFKASE----CNKVSSVLL-AIRKALEEK-VPESPSRELCILTTLARSDPPALEEALERI 856
DF+ E + SV A + K V + P IL+ E I
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKS---ILSK-------------EEI 51
Query: 857 KIIRETELLGSDEPRRMSYPSAEEALKHLLW--LADSEAVYEAALGL-----YDLNLAAI 909
++ S A L W L+ E + + + Y ++ I
Sbjct: 52 D-----HIIMS--------KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98
Query: 910 VALNSQR--DPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLN 967
Q + ++ L + + +Y + RLQ + L+ L
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-RLQPYLK-LR-----------QALL 145
Query: 968 LMKKYAQLFPLGL----KLITDPAKMEQVL--EAWADHLSDVKC-FEDAATTYFCCSSLE 1020
++ + G+ K + + + V+C +
Sbjct: 146 ELRPAKNVLIDGVLGSGK---------TWVALDVCLSY--KVQCKMDF------------ 182
Query: 1021 KAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDV 1080
K + W L L + + E LQ L +I ++
Sbjct: 183 ---KIF-----W---------LNLKNCNSPE---TVLEMLQKL-----LYQIDPNWTSRS 217
Query: 1081 TNGISLLIDARDWEEALRVAFMHRR--EDLI--------TKVKHASLECASSLIGEYKEG 1130
+ ++ + + LR + L+ +L C L+
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC-KILL------ 270
Query: 1131 LEKVGKYLTRYLAVRQRRLLLVAKLQSEDRSMNDLDDDTVSETSSTFS---GMSVYTTGT 1187
TR+ V L A + + T E S
Sbjct: 271 -------TTRFKQVTDF---LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP---QD 317
Query: 1188 RKSSAASIK----STAASKARESK------RQRNRGKIRPGSPGEEMALVDHLKGMSLTV 1237
+ S A R+ + N K+ E +L + L+
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII---ESSL-NVLEPAEY-- 371
Query: 1238 GAKQELKSLVVF----------LVMLGEVDTARKLQDTGETFQLSQMAAIKLAEDTMSI- 1286
++ L VF L ++ + + + E T+SI
Sbjct: 372 --RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
Query: 1287 DIINE-----------HAHNMERYVQIVKLES-----------------------QNSEA 1312
I E H ++ Y +S ++ E
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Query: 1313 FSWRSKVFL 1321
+ VFL
Sbjct: 490 MTLFRMVFL 498
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 4e-04
Identities = 31/219 (14%), Positives = 68/219 (31%), Gaps = 42/219 (19%)
Query: 33 NRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYL--MEKEAL 90
NRL N I + + + I+++ + I + E
Sbjct: 95 NRLLLLYPGNQITILDSKTNK------------VLREIEVDSANEIIYMYGHNEVNTEYF 142
Query: 91 IVGTSSGLLLLHSVDGNATEVV--GRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWD 148
I + G + S + ++ +V + + D LL + + G + V ++
Sbjct: 143 IWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV----YN 198
Query: 149 LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVW- 207
L + ++ + F V E F + +G + + + + +
Sbjct: 199 L---SSPDQASSRFPVDEEAKIKEVKF-AD-----NGYWMVVECD--------QTVVCFD 241
Query: 208 -ERDSGTLQASSELKAFMGA---VLEWMPSGANIAAVYD 242
+D GTL + + SG N+ A +
Sbjct: 242 LRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSN 280
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1323 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.98 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.98 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.97 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.97 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.97 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.97 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.97 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.97 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.96 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.95 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.95 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.95 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.94 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.94 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.93 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.93 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.92 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.91 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.91 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.91 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.9 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.9 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.9 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.9 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.89 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.86 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.86 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.85 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.84 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.83 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.82 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.79 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.79 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.78 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.78 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.75 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.74 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.73 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.72 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.71 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.69 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.68 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.57 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.57 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.44 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.39 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.35 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.33 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.27 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.04 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.95 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.9 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.9 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.81 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.81 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.77 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.73 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.72 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.7 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.65 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.52 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.39 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.32 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.27 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.94 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.86 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.73 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.98 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 96.84 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 96.56 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 96.25 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 95.29 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 94.75 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 94.47 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 94.23 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 94.01 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 87.76 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 86.07 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 84.85 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.6e-29 Score=222.03 Aligned_cols=276 Identities=13% Similarity=0.120 Sum_probs=204.3
Q ss_pred CCCEEEEEEECCCCEEEEEECCCCEEEEECCCC----EE--EEECEECCCEEEEEECCCCCEEEEEECCCCEEEEEECC-
Q ss_conf 997899999039998999968995999968999----19--99100359599999937899699996996499994047-
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGN----AT--EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDW- 147 (1323)
Q Consensus 75 ~~~V~~i~~spd~~~La~as~dG~I~lw~~~~~----~~--e~vg~~~~~I~~~awSPDG~~LA~~s~d~tI~l~t~~~- 147 (1323)
.+.|.+++|+|+|+.|++++ ||.|++|++... .+ .....|++.|.+++|||||+.|++++.|++|.+|+...
T Consensus 51 ~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~ 129 (337)
T d1gxra_ 51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP 129 (337)
T ss_dssp SSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC
T ss_pred CCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCC
T ss_conf 99289999989999999997-99889977367763311687640488996899998679988988612332111111111
Q ss_pred CEEEEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEE
Q ss_conf 21012320346797400147624689985789990688579992255445588988999979999366641567985458
Q 000736 148 DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAV 227 (1323)
Q Consensus 148 d~~~e~~l~~~~~~~~Vs~tqf~~~d~~v~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~g~~~s 227 (1323)
.......+ ..|...+..++|+||+.+++ +++ .++.+++|+..++++......+.+.+.+
T Consensus 130 ~~~~~~~~--------------~~~~~~v~~~~~~~~~~~l~-s~~------~d~~i~~~~~~~~~~~~~~~~~~~~v~~ 188 (337)
T d1gxra_ 130 TPRIKAEL--------------TSSAPACYALAISPDSKVCF-SCC------SDGNIAVWDLHNQTLVRQFQGHTDGASC 188 (337)
T ss_dssp --EEEEEE--------------ECSSSCEEEEEECTTSSEEE-EEE------TTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred CCCCCCCC--------------CCCCCCCCCCCCCCCCCCCC-CCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 11111111--------------11111111111111111111-111------1111111111111111111111111110
Q ss_pred EEECCCCCEEEEEECCCCCCCCCEEEEEEC-CCEEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEEC
Q ss_conf 999369996999962899999993999917-9805879994068877589999945987258997168877499999207
Q 000736 228 LEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1323)
Q Consensus 228 lawsPdG~lIAs~~~d~~~~~~~~V~l~e~-nGl~~~ef~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~n 306 (1323)
++|+|+|+.+++++.+ ..|.+|+. ++.....+. +...|.+++|+|+++.|++++.|+ .+++|+...
T Consensus 189 l~~s~~~~~~~~~~~d------~~v~i~d~~~~~~~~~~~----~~~~i~~l~~~~~~~~l~~~~~d~---~i~i~d~~~ 255 (337)
T d1gxra_ 189 IDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQHD----FTSQIFSLGYCPTGEWLAVGMESS---NVEVLHVNK 255 (337)
T ss_dssp EEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEE----CSSCEEEEEECTTSSEEEEEETTS---CEEEEETTS
T ss_pred CCCCCCCCCCCCCCCC------CCCCCCCCCCCEEECCCC----CCCCEEEEEECCCCCCCCEECCCC---CCCCCCCCC
T ss_conf 1234443211223566------553211111100000246----666157999715303000000256---421111111
Q ss_pred CEEEEEEEEEEECCCC-EEEEECCCCCCEEEEEECCCCEEEEEEEEEEEECCCEEEEEEECCEEEEEECCCCCCCCCCEE
Q ss_conf 7567776999825983-999991599927999944994999999995210899069999199799942577679998301
Q 000736 307 NHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYL 385 (1323)
Q Consensus 307 ~~wyLkqel~~~~~~~-~~v~W~p~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~i~lt~l~~~~vPpPm~~ 385 (1323)
...+ ....+ ... ..+.|+|++.. |..++.+|.+. .|+.. .+. ..
T Consensus 256 ~~~~---~~~~~-~~~i~~v~~s~~g~~-l~s~s~Dg~i~----iwd~~----------~~~----------------~~ 300 (337)
T d1gxra_ 256 PDKY---QLHLH-ESCVLSLKFAYCGKW-FVSTGKDNLLN----AWRTP----------YGA----------------SI 300 (337)
T ss_dssp SCEE---EECCC-SSCEEEEEECTTSSE-EEEEETTSEEE----EEETT----------TCC----------------EE
T ss_pred CCCC---CCCCC-CCCCCEEEECCCCCE-EEEEECCCEEE----EEECC----------CCC----------------EE
T ss_conf 1100---00124-565416999899999-99994899699----99899----------997----------------99
Q ss_pred EEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEC
Q ss_conf 2102899889999922999999999988981999978
Q 000736 386 FSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDL 422 (1323)
Q Consensus 386 ~~l~~~~~V~~VaFspdg~~~~LAs~s~Dg~I~lw~~ 422 (1323)
.++.|...|.+++|+|++ +.|++++.||+|++|++
T Consensus 301 ~~~~~~~~v~~~~~s~d~--~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 301 FQSKESSSVLSCDISVDD--KYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEECSSCEEEEEECTTS--CEEEEEETTSCEEEEEE
T ss_pred EECCCCCCEEEEEEECCC--CEEEEEECCCEEEEEEE
T ss_conf 992699987999992799--99999908996999977
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=7.3e-30 Score=225.99 Aligned_cols=328 Identities=11% Similarity=0.102 Sum_probs=198.5
Q ss_pred CEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCEEE
Q ss_conf 21579662589899999379728998224433433311202222222235799997899999039998999968995999
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~i~~spd~~~La~as~dG~I~l 101 (1323)
++.+++|++++..+++++.++.|..|+. .+++.. .+.. +.+| .+.|.+++|+|+++.|++++.||+|++
T Consensus 9 pIt~~~~s~dg~~la~~~~~~~i~iw~~--~~~~~~-~~~~----l~gH----~~~V~~l~fsp~~~~l~s~s~D~~i~v 77 (371)
T d1k8kc_ 9 PISCHAWNKDRTQIAICPNNHEVHIYEK--SGNKWV-QVHE----LKEH----NGQVTGVDWAPDSNRIVTCGTDRNAYV 77 (371)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEE--ETTEEE-EEEE----EECC----SSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred CEEEEEECCCCCEEEEEECCCEEEEEEC--CCCCEE-EEEE----ECCC----CCCEEEEEECCCCCEEEEEECCCEEEE
T ss_conf 8389999899999999948898999988--899789-9999----5588----998889999799999999979993999
Q ss_pred EECCCCEEE---EECEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCEEEEEEECCCCCCCEECCCCCCCCCCCEEE
Q ss_conf 968999199---91003595999999378996999969964999940472101232034679740014762468998578
Q 000736 102 HSVDGNATE---VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1323)
Q Consensus 102 w~~~~~~~e---~vg~~~~~I~~~awSPDG~~LA~~s~d~tI~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~d~~v~~ 178 (1323)
|+.+++..+ ....|...|.+++|+|||+.|+++++|+++.+|..+.......... ...+|...+.+
T Consensus 78 Wd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~-----------~~~~~~~~v~~ 146 (371)
T d1k8kc_ 78 WTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH-----------IKKPIRSTVLS 146 (371)
T ss_dssp EEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE-----------ECTTCCSCEEE
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCC-----------CCCCCCCCCCC
T ss_conf 8620332110012232211000111111121100000257630254420334331110-----------01011122211
Q ss_pred EEEECCCCEEEEEECCCCCCCCCCEEEEEECCC------------------CCEEEEECCCCCCEEEEEECCCCCEEEEE
Q ss_conf 999068857999225544558898899997999------------------93666415679854589993699969999
Q 000736 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS------------------GTLQASSELKAFMGAVLEWMPSGANIAAV 240 (1323)
Q Consensus 179 IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~------------------G~l~~t~e~~~g~~~slawsPdG~lIAs~ 240 (1323)
++|+|||++|| +++. |+++++|+... +.+......+.+.+.+++|+|+|++||++
T Consensus 147 v~~~p~~~~l~-s~s~------D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~ 219 (371)
T d1k8kc_ 147 LDWHPNSVLLA-AGSC------DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV 219 (371)
T ss_dssp EEECTTSSEEE-EEET------TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEE
T ss_pred CCCCCCCCCEE-CCCC------CCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCC
T ss_conf 11111111100-0134------7679998401576431001221111111101124404766747898751233210000
Q ss_pred ECCCCCCCCCEEEEEECC-CEEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEEEEEEEEEC
Q ss_conf 628999999939999179-8058799940688775899999459872589971688774999992077567776999825
Q 000736 241 YDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLR 319 (1323)
Q Consensus 241 ~~d~~~~~~~~V~l~e~n-Gl~~~ef~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~n~~wyLkqel~~~~ 319 (1323)
+.| ..|.+|+.+ +.....+ .. +...|.+++|+|||++||++..+ .+.+|...+..+. +.+..
T Consensus 220 ~~d------~~i~iwd~~~~~~~~~~--~~-~~~~v~s~~fs~d~~~la~g~d~----~~~~~~~~~~~~~----~~~~~ 282 (371)
T d1k8kc_ 220 SHD------STVCLADADKKMAVATL--AS-ETLPLLAVTFITESSLVAAGHDC----FPVLFTYDSAAGK----LSFGG 282 (371)
T ss_dssp ETT------TEEEEEEGGGTTEEEEE--EC-SSCCEEEEEEEETTEEEEEETTS----SCEEEEEETTTTE----EEECC
T ss_pred CCC------CCCEEEEEECCCCEEEE--EC-CCCCCEEEEECCCCCEEEEECCC----CEEEEEEECCCCE----EEEEE
T ss_conf 147------86058864101210000--01-46652036546999799998199----2678776089862----88720
Q ss_pred CCCEEEEECCCCCCEEEEEECCCCEEEEEEEEEEEECCCEEEEEEECCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEE
Q ss_conf 98399999159992799994499499999999521089906999919979994257767999830121028998899999
Q 000736 320 RDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAF 399 (1323)
Q Consensus 320 ~~~~~v~W~p~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~i~lt~l~~~~vPpPm~~~~l~~~~~V~~VaF 399 (1323)
..+.+.......... . ..... .+... ..++.. .+.....-.|.+.|++|++
T Consensus 283 --------~~~~~~~~~~~~~~~-~---~~~~~--~~~~~---~~~~~~------------~~~~~~~~~H~~~I~~i~~ 333 (371)
T d1k8kc_ 283 --------RLDVPKQSSQRGLTA-R---ERFQN--LDKKA---SSEGSA------------AAGAGLDSLHKNSVSQISV 333 (371)
T ss_dssp --------CCCCC--------CH-H---HHHHH--CCCCC------------------------CCCSSSSSSCEEEEEE
T ss_pred --------EECCCCCCCCCCCCC-E---EEEEC--CCCEE---EEECCC------------CCCCEECCCCCCCEEEEEE
T ss_conf --------206765421246220-0---16850--65205---871245------------5661412555698899999
Q ss_pred ECCCCC--CEEEEEECCCCEEEEECCC
Q ss_conf 229999--9999998898199997899
Q 000736 400 YSKSSK--NCLAAILSDGCLCVVDLPA 424 (1323)
Q Consensus 400 spdg~~--~~LAs~s~Dg~I~lw~~~~ 424 (1323)
.+.+.. ..+++++.||+|++|++.+
T Consensus 334 ~~~~~~~~~~~~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 334 LSGGKAKCSQFCTTGMDGGMSIWDVRS 360 (371)
T ss_dssp EESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred ECCCCCCEEEEEEECCCCEEEEEECCC
T ss_conf 489986567999991899399996986
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.7e-28 Score=214.77 Aligned_cols=200 Identities=14% Similarity=0.104 Sum_probs=97.2
Q ss_pred CCEEEEEEECCCCEEEEEECCCCEEEEECCCCE-EEEECEECCCEEEEEECCCCCEEEEEECCCCEEEEEECC-CEEEEE
Q ss_conf 978999990399989999689959999689991-999100359599999937899699996996499994047-210123
Q 000736 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDW-DLLYEN 153 (1323)
Q Consensus 76 ~~V~~i~~spd~~~La~as~dG~I~lw~~~~~~-~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tI~l~t~~~-d~~~e~ 153 (1323)
+.+..++++|+|+.|+.+. ++.|.+|+.++.. ..+...|.+.|++++|||||++||+++.|++|.+|+..- ......
T Consensus 18 ~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~ 96 (311)
T d1nr0a1 18 GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT 96 (311)
T ss_dssp TCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE
T ss_pred CCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCCEEEEEEEECCCCCCCC
T ss_conf 8759999969989999996-999999999999661797478888899999489996722556736746631011110000
Q ss_pred EECCCCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCC
Q ss_conf 20346797400147624689985789990688579992255445588988999979999366641567985458999369
Q 000736 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS 233 (1323)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~d~~v~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~g~~~slawsPd 233 (1323)
. +..|...+.+++|+|||++++ +++. +.++.++||+.++++...+...|...+.+++|+|+
T Consensus 97 ~--------------~~~~~~~v~~v~~s~d~~~l~-~~~~----~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~ 157 (311)
T d1nr0a1 97 T--------------IPVFSGPVKDISWDSESKRIA-AVGE----GRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPS 157 (311)
T ss_dssp E--------------EECSSSCEEEEEECTTSCEEE-EEEC----CSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSS
T ss_pred C--------------CCCCCCCCCCCCCCCCCCCCC-CCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1--------------343357543323331110001-1112----21111111111111111111111111111111211
Q ss_pred CCE-EEEEECCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEEC
Q ss_conf 996-9999628999999939999179805879994068877589999945987258997168877499999207
Q 000736 234 GAN-IAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1323)
Q Consensus 234 G~l-IAs~~~d~~~~~~~~V~l~e~nGl~~~ef~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~n 306 (1323)
|+. +++++.|+ .|.+|+........ .+. .+...|.+++|+||+++|++++.|+ .|++|+..+
T Consensus 158 ~~~~l~sgs~d~------~i~i~d~~~~~~~~-~~~-~~~~~i~~v~~~p~~~~l~~~~~d~---~v~~~d~~~ 220 (311)
T d1nr0a1 158 RPFRIISGSDDN------TVAIFEGPPFKFKS-TFG-EHTKFVHSVRYNPDGSLFASTGGDG---TIVLYNGVD 220 (311)
T ss_dssp SSCEEEEEETTS------CEEEEETTTBEEEE-EEC-CCSSCEEEEEECTTSSEEEEEETTS---CEEEEETTT
T ss_pred CEEEECCCCCCC------CCCCCCCCCCCCCC-CCC-CCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCC
T ss_conf 101200011221------11111111111111-111-1111111123476422121111111---110001244
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=5.5e-27 Score=205.40 Aligned_cols=294 Identities=13% Similarity=0.095 Sum_probs=144.4
Q ss_pred CCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEE-EEE------------------CEECCCEEEEEECCCCCEEEEEE
Q ss_conf 99789999903999899996899599996899919-991------------------00359599999937899699996
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVV------------------GRVEGGVRFISPSPDGDLLGVTT 135 (1323)
Q Consensus 75 ~~~V~~i~~spd~~~La~as~dG~I~lw~~~~~~~-e~v------------------g~~~~~I~~~awSPDG~~LA~~s 135 (1323)
.+.|.+++|+|||+.|++|+ ||.|++|+..++.. ... ..++..|++++|||||++|++++
T Consensus 62 ~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~ 140 (388)
T d1erja_ 62 TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA 140 (388)
T ss_dssp SSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEE-CCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEECC
T ss_conf 99689999999999999994-99489998136405766316654432443211101467789889999889998012134
Q ss_pred CCCCEEEEEECCCEEEEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEE
Q ss_conf 99649999404721012320346797400147624689985789990688579992255445588988999979999366
Q 000736 136 GFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQ 215 (1323)
Q Consensus 136 ~d~tI~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~d~~v~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~ 215 (1323)
.|++|.+|+.... ..+.. +.+|...+..+.|++++..++ +++ .++.+++|+..++...
T Consensus 141 ~dg~v~i~~~~~~----~~~~~-----------~~~h~~~v~~~~~~~~~~~~~-~~~------~~~~i~~~d~~~~~~~ 198 (388)
T d1erja_ 141 EDRLIRIWDIENR----KIVMI-----------LQGHEQDIYSLDYFPSGDKLV-SGS------GDRTVRIWDLRTGQCS 198 (388)
T ss_dssp TTSCEEEEETTTT----EEEEE-----------ECCCSSCEEEEEECTTSSEEE-EEE------TTSEEEEEETTTTEEE
T ss_pred CCCCCCCCCCCCC----CCCCC-----------CCCCCCCCCCCCCCCCCCCCC-CCC------CCEEEEEEECCCCCCC
T ss_conf 4411112111111----11111-----------111111111101111111111-222------1015654101111110
Q ss_pred EEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEECC-CEEEEEEEEC----CCCCCCEEEEEECCCCCEEEEE
Q ss_conf 6415679854589993699969999628999999939999179-8058799940----6887758999994598725899
Q 000736 216 ASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDIN----EQIDSTVELLKWNCMSDLLAAV 290 (1323)
Q Consensus 216 ~t~e~~~g~~~slawsPdG~lIAs~~~d~~~~~~~~V~l~e~n-Gl~~~ef~l~----~~~~~~V~~laWSpDg~~LA~~ 290 (1323)
.....+........+.++|++|++++.++ .|.+|+.. +.....+... ..+...|.+++|+|||+.|+++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~------~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~ 272 (388)
T d1erja_ 199 LTLSIEDGVTTVAVSPGDGKYIAAGSLDR------AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 272 (388)
T ss_dssp EEEECSSCEEEEEECSTTCCEEEEEETTS------CEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCCC------EEEEEECCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCEEEEE
T ss_conf 00012454421123688787589973898------199963455730001024433345778987899997999999999
Q ss_pred ECCCCCCEEEEEEEECCEEEEEEEEEEECCCCEEEEECCCCCCEEEEEECCCCEEEEEEEEEEEECCCEEEEEEECCEEE
Q ss_conf 71688774999992077567776999825983999991599927999944994999999995210899069999199799
Q 000736 291 VRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKIL 370 (1323)
Q Consensus 291 ~~d~~~~~VqlW~~~n~~wyLkqel~~~~~~~~~v~W~p~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~i~ 370 (1323)
+.|+ .|++|+..+..... .... +. .+.
T Consensus 273 ~~d~---~i~iwd~~~~~~~~--~~~~-----------~~----------------------------------~~~--- 299 (388)
T d1erja_ 273 SLDR---SVKLWNLQNANNKS--DSKT-----------PN----------------------------------SGT--- 299 (388)
T ss_dssp ETTS---EEEEEEC--------------------------------------------------------------C---
T ss_pred ECCC---CEEEEECCCCCCCC--CCCC-----------CC----------------------------------CCC---
T ss_conf 7899---28987515776432--1013-----------44----------------------------------420---
Q ss_pred EEECCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCE
Q ss_conf 94257767999830121028998899999229999999999889819999789988522235971247420244566837
Q 000736 371 VTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSV 450 (1323)
Q Consensus 371 lt~l~~~~vPpPm~~~~l~~~~~V~~VaFspdg~~~~LAs~s~Dg~I~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v 450 (1323)
.......|...|.+++|+|++ +.|++++.||+|++|+..+......+.| |.+.+
T Consensus 300 ------------~~~~~~~~~~~v~~~~~s~~~--~~l~sg~~dg~i~vwd~~~~~~~~~l~~------------H~~~V 353 (388)
T d1erja_ 300 ------------CEVTYIGHKDFVLSVATTQND--EYILSGSKDRGVLFWDKKSGNPLLMLQG------------HRNSV 353 (388)
T ss_dssp ------------EEEEEECCSSCEEEEEECGGG--CEEEEEETTSEEEEEETTTCCEEEEEEC------------CSSCE
T ss_pred ------------EEEECCCCCCEEEEEEECCCC--CEEEEEECCCEEEEEECCCCCEEEEEEC------------CCCCE
T ss_conf ------------011012455327899988999--9999996989799999999969999968------------89978
Q ss_pred EEEE------EECCCEEEEEEECCCCCEEEEEEE
Q ss_conf 9999------944984999982699870289983
Q 000736 451 IHLI------WLGSHLLLSVSHHGPRHSNYFRGA 478 (1323)
Q Consensus 451 ~~l~------~~~d~~lla~~~~~~~~~~~~~~~ 478 (1323)
..+. |+|++.+|++++.+ .++.+|.+
T Consensus 354 ~~~~~~~~~~~spd~~~l~s~s~D--g~I~iW~~ 385 (388)
T d1erja_ 354 ISVAVANGSSLGPEYNVFATGSGD--CKARIWKY 385 (388)
T ss_dssp EEEEECSSCTTCTTCEEEEEEETT--SEEEEEEE
T ss_pred EEEEEECCCCCCCCCCEEEEEECC--CEEEEEEE
T ss_conf 999984674258999999999189--97999762
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.98 E-value=7.4e-28 Score=211.63 Aligned_cols=242 Identities=11% Similarity=0.106 Sum_probs=186.9
Q ss_pred CEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCEEE
Q ss_conf 21579662589899999379728998224433433311202222222235799997899999039998999968995999
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~i~~spd~~~La~as~dG~I~l 101 (1323)
.+..++++++++.++++++.. ++.|+. .+... ..+ +.+| .+.|++++|+|+|+.|++++.||+|++
T Consensus 19 ~~~~~a~~~~g~~l~~~~~~~-v~i~~~--~~~~~-~~~------~~~H----~~~v~~~~~sp~g~~latg~~dg~i~i 84 (311)
T d1nr0a1 19 TAVVLGNTPAGDKIQYCNGTS-VYTVPV--GSLTD-TEI------YTEH----SHQTTVAKTSPSGYYCASGDVHGNVRI 84 (311)
T ss_dssp CCCCCEECTTSSEEEEEETTE-EEEEET--TCSSC-CEE------ECCC----SSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CEEEEEECCCCCEEEEEECCE-EEEEEC--CCCCE-EEE------ECCC----CCCEEEEEEECCCCEEECCCCCCEEEE
T ss_conf 759999969989999996999-999999--99966-179------7478----888899999489996722556736746
Q ss_pred EECCCCE--EE-EECEECCCEEEEEECCCCCEEEEEECC--CCEEEEEECCCEEEEEEECCCCCCCEECCCCCCCCCCCE
Q ss_conf 9689991--99-910035959999993789969999699--649999404721012320346797400147624689985
Q 000736 102 HSVDGNA--TE-VVGRVEGGVRFISPSPDGDLLGVTTGF--GQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1323)
Q Consensus 102 w~~~~~~--~e-~vg~~~~~I~~~awSPDG~~LA~~s~d--~tI~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~d~~v 176 (1323)
|+..+.. .. .+..|.+.|.+++|||||+.|++++.+ ..+.+|. |+. ...... +.+|.+.+
T Consensus 85 wd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~--~~~--~~~~~~-----------l~~h~~~v 149 (311)
T d1nr0a1 85 WDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFL--FDT--GTSNGN-----------LTGQARAM 149 (311)
T ss_dssp EESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEE--TTT--CCBCBC-----------CCCCSSCE
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCC--CCCCCC-----------CCCCCCCC
T ss_conf 631011110000134335754332333111000111122111111111--111--111111-----------11111111
Q ss_pred EEEEEECCCCE-EEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEE
Q ss_conf 78999068857-99922554455889889999799993666415679854589993699969999628999999939999
Q 000736 177 SPISWRGDGKY-FATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1323)
Q Consensus 177 ~~IsWs~DG~~-lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~g~~~slawsPdG~lIAs~~~d~~~~~~~~V~l~ 255 (1323)
.+++|+|||++ |+ +++ .++.|++|+..+++.......+...+.+++|+|+|++|++++.|+ .|.+|
T Consensus 150 ~~v~~~~~~~~~l~-sgs------~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~------~v~~~ 216 (311)
T d1nr0a1 150 NSVDFKPSRPFRII-SGS------DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG------TIVLY 216 (311)
T ss_dssp EEEEECSSSSCEEE-EEE------TTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTS------CEEEE
T ss_pred CCCCCCCCCEEEEC-CCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCC
T ss_conf 11111211101200-011------221111111111111111111111111123476422121111111------11000
Q ss_pred EC-CCEEEEEEEEC----CCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCE
Q ss_conf 17-98058799940----6887758999994598725899716887749999920775
Q 000736 256 ER-NGLERSSFDIN----EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1323)
Q Consensus 256 e~-nGl~~~ef~l~----~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~n~~ 308 (1323)
+. ++.....|... ..+...|.+++|+|||+.|++++.|+ +|++|+..+..
T Consensus 217 d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg---~v~iwd~~t~~ 271 (311)
T d1nr0a1 217 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK---TIKIWNVATLK 271 (311)
T ss_dssp ETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS---EEEEEETTTTE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC---EEEEEECCCCC
T ss_conf 12446411222111111100246532102478899999993799---69999999996
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.3e-26 Score=202.72 Aligned_cols=315 Identities=9% Similarity=-0.019 Sum_probs=215.2
Q ss_pred EEEEEECCCCEEEEEECCCCEEEEECC-C---CEEEEECEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCC-EEEEE
Q ss_conf 999990399989999689959999689-9---919991003595999999378996999969964999940472-10123
Q 000736 79 TAFDYLMEKEALIVGTSSGLLLLHSVD-G---NATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWD-LLYEN 153 (1323)
Q Consensus 79 ~~i~~spd~~~La~as~dG~I~lw~~~-~---~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tI~l~t~~~d-~~~e~ 153 (1323)
.+++.+++|+..-+......+. +.. . +.+... .|...|.|++|||||++||+++ ||+|++|+..-. .....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~ 88 (337)
T d1gxra_ 13 YSFHVTADGQMQPVPFPPDALI--GPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPV 88 (337)
T ss_dssp CEEEECSSSCEEECCCCTTSSS--STTCCSEEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCS
T ss_pred CCCCCCCCCCEEEECCCCCCEE--CCCCCCCCEEEEEC-CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCCCCEE
T ss_conf 6521989997874036975145--67999875499987-9999289999989999999997-998899773677633116
Q ss_pred EECCCCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECC--CCCEEEEECCCCCCEEEEEEC
Q ss_conf 203467974001476246899857899906885799922554455889889999799--993666415679854589993
Q 000736 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD--SGTLQASSELKAFMGAVLEWM 231 (1323)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~d~~v~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~--~G~l~~t~e~~~g~~~slaws 231 (1323)
. ...+.+|++.+.+++|+|||++|+ +++ .++.|++|+.. ++........+...+..++|+
T Consensus 89 ~-----------~~~~~~h~~~I~~v~~s~dg~~l~-s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 150 (337)
T d1gxra_ 89 S-----------QLDCLNRDNYIRSCKLLPDGCTLI-VGG------EASTLSIWDLAAPTPRIKAELTSSAPACYALAIS 150 (337)
T ss_dssp E-----------EEECSCTTSBEEEEEECTTSSEEE-EEE------SSSEEEEEECCCC--EEEEEEECSSSCEEEEEEC
T ss_pred E-----------EEEECCCCCCEEEEEECCCCCEEE-EEE------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 8-----------764048899689999867998898-861------2332111111111111111111111111111111
Q ss_pred CCCCEEEEEECCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEE
Q ss_conf 69996999962899999993999917980587999406887758999994598725899716887749999920775677
Q 000736 232 PSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYL 311 (1323)
Q Consensus 232 PdG~lIAs~~~d~~~~~~~~V~l~e~nGl~~~ef~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~n~~wyL 311 (1323)
|++.++++++.+ ..|.+|+........ .. ..+...|.+++|++++..+++++.|+ .|++|+..+...
T Consensus 151 ~~~~~l~s~~~d------~~i~~~~~~~~~~~~-~~-~~~~~~v~~l~~s~~~~~~~~~~~d~---~v~i~d~~~~~~-- 217 (337)
T d1gxra_ 151 PDSKVCFSCCSD------GNIAVWDLHNQTLVR-QF-QGHTDGASCIDISNDGTKLWTGGLDN---TVRSWDLREGRQ-- 217 (337)
T ss_dssp TTSSEEEEEETT------SCEEEEETTTTEEEE-EE-CCCSSCEEEEEECTTSSEEEEEETTS---EEEEEETTTTEE--
T ss_pred CCCCCCCCCCCC------CCCCCCCCCCCCCCC-CC-CCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCEE--
T ss_conf 111111111111------111111111111111-11-11111111012344432112235665---532111111000--
Q ss_pred EEEEEEECCCC-EEEEECCCCCCEEEEEECCCCEEEEEEEEEEEECCCEEEEEEECCEEEEEECCCCCCCCCCEEEEECC
Q ss_conf 76999825983-99999159992799994499499999999521089906999919979994257767999830121028
Q 000736 312 KYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKF 390 (1323)
Q Consensus 312 kqel~~~~~~~-~~v~W~p~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~i~lt~l~~~~vPpPm~~~~l~~ 390 (1323)
.+.+. .... .++.|+|++.. +.+++.+|.+. .|+. +... ......|
T Consensus 218 ~~~~~--~~~~i~~l~~~~~~~~-l~~~~~d~~i~----i~d~---------------------~~~~-----~~~~~~~ 264 (337)
T d1gxra_ 218 LQQHD--FTSQIFSLGYCPTGEW-LAVGMESSNVE----VLHV---------------------NKPD-----KYQLHLH 264 (337)
T ss_dssp EEEEE--CSSCEEEEEECTTSSE-EEEEETTSCEE----EEET---------------------TSSC-----EEEECCC
T ss_pred ECCCC--CCCCEEEEEECCCCCC-CCEECCCCCCC----CCCC---------------------CCCC-----CCCCCCC
T ss_conf 00246--6661579997153030-00000256421----1111---------------------1111-----0000124
Q ss_pred CCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCC
Q ss_conf 99889999922999999999988981999978998852223597124742024456683799999449849999826998
Q 000736 391 PTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPR 470 (1323)
Q Consensus 391 ~~~V~~VaFspdg~~~~LAs~s~Dg~I~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~ 470 (1323)
...|.+++|+|+| +.|++++.||+|++|+..+....... .+...+..++|+|++++|++++.+
T Consensus 265 ~~~i~~v~~s~~g--~~l~s~s~Dg~i~iwd~~~~~~~~~~-------------~~~~~v~~~~~s~d~~~l~t~s~D-- 327 (337)
T d1gxra_ 265 ESCVLSLKFAYCG--KWFVSTGKDNLLNAWRTPYGASIFQS-------------KESSSVLSCDISVDDKYIVTGSGD-- 327 (337)
T ss_dssp SSCEEEEEECTTS--SEEEEEETTSEEEEEETTTCCEEEEE-------------ECSSCEEEEEECTTSCEEEEEETT--
T ss_pred CCCCCEEEECCCC--CEEEEEECCCEEEEEECCCCCEEEEC-------------CCCCCEEEEEEECCCCEEEEEECC--
T ss_conf 5654169998999--99999948996999989999799992-------------699987999992799999999089--
Q ss_pred CEEEEEEE
Q ss_conf 70289983
Q 000736 471 HSNYFRGA 478 (1323)
Q Consensus 471 ~~~~~~~~ 478 (1323)
.++.+|.+
T Consensus 328 ~~I~vWdl 335 (337)
T d1gxra_ 328 KKATVYEV 335 (337)
T ss_dssp SCEEEEEE
T ss_pred CEEEEEEE
T ss_conf 96999977
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.4e-26 Score=202.48 Aligned_cols=338 Identities=11% Similarity=0.034 Sum_probs=220.2
Q ss_pred EEECCCCEEEEECCCC-EE-----EEECEECCCEEEEEECCCCCEEEEEECCCCEEEEEE-CCCEEEEEEECCCC--CCC
Q ss_conf 9968995999968999-19-----991003595999999378996999969964999940-47210123203467--974
Q 000736 92 VGTSSGLLLLHSVDGN-AT-----EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELA--EGF 162 (1323)
Q Consensus 92 ~as~dG~I~lw~~~~~-~~-----e~vg~~~~~I~~~awSPDG~~LA~~s~d~tI~l~t~-~~d~~~e~~l~~~~--~~~ 162 (1323)
....++.+.+|+.... .. +..+ |.+.|+|++|||||++||+++ |++|++|+. ++..+.....+... ...
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~ 110 (388)
T d1erja_ 33 KKQTNDYYILYNPALPREIDVELHKSLD-HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPE 110 (388)
T ss_dssp EEECSSCEEEECTTSCCCEEEEEEEEEE-CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC---------
T ss_pred CCCCCCCEEEECCCCCCCEEEEEEEECC-CCCCEEEEEECCCCCEEEEEE-CCEEEEEEECCCCEEEEECCCCCCCCCCC
T ss_conf 4688970898688777620541076079-999689999999999999994-99489998136405766316654432443
Q ss_pred EECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 00147624689985789990688579992255445588988999979999366641567985458999369996999962
Q 000736 163 DVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYD 242 (1323)
Q Consensus 163 ~Vs~tqf~~~d~~v~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~g~~~slawsPdG~lIAs~~~ 242 (1323)
.+.......|+..+.+++|+|||++|+ +++ .++.|++|+...++.......|.+.+.+++|+|++..+++++.
T Consensus 111 ~~~~~~~~~~~~~V~~l~~s~~~~~l~-s~~------~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 183 (388)
T d1erja_ 111 NLNTSSSPSSDLYIRSVCFSPDGKFLA-TGA------EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 183 (388)
T ss_dssp --------CCCCBEEEEEECTTSSEEE-EEE------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCE-ECC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 211101467789889999889998012-134------4411112111111111111111111111011111111112221
Q ss_pred CCCCCCCCEEEEEECCCEEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEEEEEEEEECCCC
Q ss_conf 89999999399991798058799940688775899999459872589971688774999992077567776999825983
Q 000736 243 RKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG 322 (1323)
Q Consensus 243 d~~~~~~~~V~l~e~nGl~~~ef~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~n~~wyLkqel~~~~~~~ 322 (1323)
+ ..|.+|+......... .. .....+....+++|+.+|++++.|+ .|++|+..+...
T Consensus 184 ~------~~i~~~d~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~l~~~~~d~---~i~i~~~~~~~~------------- 239 (388)
T d1erja_ 184 D------RTVRIWDLRTGQCSLT-LS-IEDGVTTVAVSPGDGKYIAAGSLDR---AVRVWDSETGFL------------- 239 (388)
T ss_dssp T------SEEEEEETTTTEEEEE-EE-CSSCEEEEEECSTTCCEEEEEETTS---CEEEEETTTCCE-------------
T ss_pred C------EEEEEEECCCCCCCCC-CC-CCCCCCCCCCCCCCCCEEEEECCCC---EEEEEECCCCCC-------------
T ss_conf 0------1565410111111000-01-2454421123688787589973898---199963455730-------------
Q ss_pred EEEEECCCCCCEEEEEECCCCEEEEEEEEEEEECCCEEEEEEECCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEECC
Q ss_conf 99999159992799994499499999999521089906999919979994257767999830121028998899999229
Q 000736 323 IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSK 402 (1323)
Q Consensus 323 ~~v~W~p~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~i~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFspd 402 (1323)
+...... . .....|...|.+++|+|+
T Consensus 240 ------------~~~~~~~---------------~---------------------------~~~~~h~~~v~~l~~s~~ 265 (388)
T d1erja_ 240 ------------VERLDSE---------------N---------------------------ESGTGHKDSVYSVVFTRD 265 (388)
T ss_dssp ------------EEEEC------------------------------------------------CCCSSCEEEEEECTT
T ss_pred ------------CEEECCC---------------C---------------------------CCCCCCCCCEEEEEECCC
T ss_conf ------------0010244---------------3---------------------------334577898789999799
Q ss_pred CCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCCEEEEEEEECCC
Q ss_conf 99999999988981999978998852223597124742024456683799999449849999826998702899831266
Q 000736 403 SSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNE 482 (1323)
Q Consensus 403 g~~~~LAs~s~Dg~I~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~ 482 (1323)
+ +.|++++.||+|++|+........................+...+..++|+|++.+|++++.+ ..+.+|++.- +
T Consensus 266 ~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d--g~i~vwd~~~-~ 340 (388)
T d1erja_ 266 G--QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD--RGVLFWDKKS-G 340 (388)
T ss_dssp S--SEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT--SEEEEEETTT-C
T ss_pred C--CEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCEEEEEECC--CEEEEEECCC-C
T ss_conf 9--999999789928987515776432101344420011012455327899988999999999698--9799999999-9
Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEE------CCCCCCEEEEEEECCEEEEEEC
Q ss_conf 864441124444211455523422245532034310145770899810------7889756999951875999925
Q 000736 483 DGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAP------NNAKKYSAFLQFHGGKISEYMS 552 (1323)
Q Consensus 483 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~------~~~~~~~~~~q~~dG~v~~~~~ 552 (1323)
.. +.....+.+.|..+.. +| ++..++....||+|..|+.
T Consensus 341 ----------------------------~~--~~~l~~H~~~V~~~~~~~~~~~sp-d~~~l~s~s~Dg~I~iW~~ 385 (388)
T d1erja_ 341 ----------------------------NP--LLMLQGHRNSVISVAVANGSSLGP-EYNVFATGSGDCKARIWKY 385 (388)
T ss_dssp ----------------------------CE--EEEEECCSSCEEEEEECSSCTTCT-TCEEEEEEETTSEEEEEEE
T ss_pred ----------------------------CE--EEEEECCCCCEEEEEEECCCCCCC-CCCEEEEEECCCEEEEEEE
T ss_conf ----------------------------69--999968899789999846742589-9999999918997999762
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=1.7e-26 Score=201.94 Aligned_cols=227 Identities=13% Similarity=0.090 Sum_probs=158.7
Q ss_pred CCCCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEE-EEECEECCCEEEEEECCCCCEEEEEECCCCEEEEEE
Q ss_conf 2223579999789999903999899996899599996899919-991003595999999378996999969964999940
Q 000736 67 IEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH 145 (1323)
Q Consensus 67 ~~~~~~~~~~~V~~i~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~d~tI~l~t~ 145 (1323)
|.+| .+.|++++|+|+++.|++++.||+|++|+..++++ ..+..|.+.|.+++|+|++..++.++.++++..|..
T Consensus 13 L~GH----~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (317)
T d1vyhc1 13 LSGH----RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 88 (317)
T ss_dssp EECC----SSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred ECCC----CCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 8588----887689999389899999938992999989999799999578886777763011110111111111011100
Q ss_pred CCCEEEEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCE
Q ss_conf 47210123203467974001476246899857899906885799922554455889889999799993666415679854
Q 000736 146 DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMG 225 (1323)
Q Consensus 146 ~~d~~~e~~l~~~~~~~~Vs~tqf~~~d~~v~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~g~~ 225 (1323)
..... .. .+.++...+..+.|+++|.+++ +++ .++.+++|+..++....+...+...+
T Consensus 89 ~~~~~----~~-----------~~~~~~~~~~~~~~~~~~~~~~-~~~------~d~~~~~~~~~~~~~~~~~~~~~~~~ 146 (317)
T d1vyhc1 89 QGFEC----IR-----------TMHGHDHNVSSVSIMPNGDHIV-SAS------RDKTIKMWEVQTGYCVKTFTGHREWV 146 (317)
T ss_dssp TSSCE----EE-----------CCCCCSSCEEEEEECSSSSEEE-EEE------TTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred CCCCC----CC-----------CCCCCCCCCEEEECCCCCCEEE-EEC------CCCCEEEEECCCCEEEEEECCCCCCC
T ss_conf 11111----11-----------1000000000000169985577-652------67523575114430346871677763
Q ss_pred EEEEECCCCCEEEEEECCCCCCCCCEEEEEECCC-EEEEEEEECCCCCCCEEEEEECCCCCE------------------
Q ss_conf 5899936999699996289999999399991798-058799940688775899999459872------------------
Q 000736 226 AVLEWMPSGANIAAVYDRKSENKCPSIVFYERNG-LERSSFDINEQIDSTVELLKWNCMSDL------------------ 286 (1323)
Q Consensus 226 ~slawsPdG~lIAs~~~d~~~~~~~~V~l~e~nG-l~~~ef~l~~~~~~~V~~laWSpDg~~------------------ 286 (1323)
.+++|+|+|++||+++.++ .|.+|+.+. .... .+.. +...+..++|+|++..
T Consensus 147 ~~~~~~~~~~~l~~~~~d~------~v~~~~~~~~~~~~--~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (317)
T d1vyhc1 147 RMVRPNQDGTLIASCSNDQ------TVRVWVVATKECKA--ELRE-HRHVVECISWAPESSYSSISEATGSETKKSGKPG 217 (317)
T ss_dssp EEEEECTTSSEEEEEETTS------CEEEEETTTCCEEE--EECC-CSSCEEEEEECCSCGGGGGGGCCSCC-------C
T ss_pred EEEECCCCCCEEEEEECCC------EEEEEEECCCEEEE--EEEC-CCCCCEEEEEEECCCCCEEECCCCCEEEEECCCC
T ss_conf 0000166799999992798------29997512540347--8824-7787337998632564111034563034302588
Q ss_pred --EEEEECCCCCCEEEEEEEECCEEEEEEEEEEECCCCEEEEECCCCCC
Q ss_conf --58997168877499999207756777699982598399999159992
Q 000736 287 --LAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPL 333 (1323)
Q Consensus 287 --LA~~~~d~~~~~VqlW~~~n~~wyLkqel~~~~~~~~~v~W~p~~~~ 333 (1323)
+++++.|+ .|++|+..+... ...+..+......+.|+|++..
T Consensus 218 ~~~~~~~~d~---~i~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~ 261 (317)
T d1vyhc1 218 PFLLSGSRDK---TIKMWDVSTGMC--LMTLVGHDNWVRGVLFHSGGKF 261 (317)
T ss_dssp CEEEEEETTS---EEEEEETTTTEE--EEEEECCSSCEEEEEECSSSSC
T ss_pred CEEEECCCCC---EEEEEECCCCCE--EEEEECCCCCEEEEEECCCCCE
T ss_conf 6147516997---899988899968--8999688998799998799999
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=1.2e-26 Score=203.07 Aligned_cols=202 Identities=11% Similarity=0.041 Sum_probs=120.8
Q ss_pred CCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEE---EECEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCEEEE
Q ss_conf 97899999039998999968995999968999199---910035959999993789969999699649999404721012
Q 000736 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE---VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYE 152 (1323)
Q Consensus 76 ~~V~~i~~spd~~~La~as~dG~I~lw~~~~~~~e---~vg~~~~~I~~~awSPDG~~LA~~s~d~tI~l~t~~~d~~~e 152 (1323)
+.|++++|+||++.|++++.||.|.+|+.++++.+ .+..|.+.|.+++|||||++|++++.|++|.+|+........
T Consensus 8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~ 87 (371)
T d1k8kc_ 8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP 87 (371)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCC
T ss_conf 88389999899999999948898999988899789999955889988899997999999999799939998620332110
Q ss_pred EEECCCCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCE----EEEECCCCCCEEEE
Q ss_conf 32034679740014762468998578999068857999225544558898899997999936----66415679854589
Q 000736 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL----QASSELKAFMGAVL 228 (1323)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~d~~v~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l----~~t~e~~~g~~~sl 228 (1323)
. . .+.+|...+.+++|+|||++|+ +++ .++++++|+.+.+.. .....++.+.+.++
T Consensus 88 ~--~-----------~~~~~~~~v~~i~~~p~~~~l~-~~s------~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v 147 (371)
T d1k8kc_ 88 T--L-----------VILRINRAARCVRWAPNEKKFA-VGS------GSRVISICYFEQENDWWVCKHIKKPIRSTVLSL 147 (371)
T ss_dssp E--E-----------ECCCCSSCEEEEEECTTSSEEE-EEE------TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEE
T ss_pred C--C-----------CCCCCCCCCCCCCCCCCCCCCE-EEC------CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 0--1-----------2232211000111111121100-000------257630254420334331110010111222111
Q ss_pred EECCCCCEEEEEECCCCCCCCCEEEEEECCCEEE---------------EEEEEC-CCCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 9936999699996289999999399991798058---------------799940-688775899999459872589971
Q 000736 229 EWMPSGANIAAVYDRKSENKCPSIVFYERNGLER---------------SSFDIN-EQIDSTVELLKWNCMSDLLAAVVR 292 (1323)
Q Consensus 229 awsPdG~lIAs~~~d~~~~~~~~V~l~e~nGl~~---------------~ef~l~-~~~~~~V~~laWSpDg~~LA~~~~ 292 (1323)
+|+|+|++||+++.|+ .|.+|+...... ++.... ..+...|.+++|+|||+.||+++.
T Consensus 148 ~~~p~~~~l~s~s~D~------~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~ 221 (371)
T d1k8kc_ 148 DWHPNSVLLAAGSCDF------KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH 221 (371)
T ss_dssp EECTTSSEEEEEETTS------CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET
T ss_pred CCCCCCCCEECCCCCC------EEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCC
T ss_conf 1111111100013476------7999840157643100122111111110112440476674789875123321000014
Q ss_pred CCCCCEEEEEEEEC
Q ss_conf 68877499999207
Q 000736 293 FEEYDSVKICFFSN 306 (1323)
Q Consensus 293 d~~~~~VqlW~~~n 306 (1323)
|+ +|++|+..+
T Consensus 222 d~---~i~iwd~~~ 232 (371)
T d1k8kc_ 222 DS---TVCLADADK 232 (371)
T ss_dssp TT---EEEEEEGGG
T ss_pred CC---CCEEEEEEC
T ss_conf 78---605886410
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=5.6e-26 Score=198.21 Aligned_cols=285 Identities=11% Similarity=0.073 Sum_probs=203.4
Q ss_pred CCCCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEE-EEECEECCCEEEEEECCCCCEEEEEECCCCEEEEEE
Q ss_conf 2223579999789999903999899996899599996899919-991003595999999378996999969964999940
Q 000736 67 IEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH 145 (1323)
Q Consensus 67 ~~~~~~~~~~~V~~i~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~d~tI~l~t~ 145 (1323)
|.+| .+.|.+++|+|+++.|++++.||+|++|+..++.. ..+..|.+.|.+++|+|||.++++++.|+++.+|..
T Consensus 51 L~GH----~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~ 126 (340)
T d1tbga_ 51 LRGH----LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp ECCC----SSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEES
T ss_pred ECCC----CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCEEECCCC
T ss_conf 8887----898889999899999999978995556310210257997246533775676012114431013320101332
Q ss_pred CCCEEEEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCE
Q ss_conf 47210123203467974001476246899857899906885799922554455889889999799993666415679854
Q 000736 146 DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMG 225 (1323)
Q Consensus 146 ~~d~~~e~~l~~~~~~~~Vs~tqf~~~d~~v~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~g~~ 225 (1323)
............. .+|........+..+..... .. .+...+.|.................+
T Consensus 127 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (340)
T d1tbga_ 127 KTREGNVRVSREL-----------AGHTGYLSCCRFLDDNQIVT-SS-------GDTTCALWDIETGQQTTTFTGHTGDV 187 (340)
T ss_dssp SSSCSCCCEEEEE-----------CCCSSCEEEEEEEETTEEEE-EE-------TTTEEEEEETTTTEEEEEEECCSSCE
T ss_pred CCCCCCCCCCEEC-----------CCCCCCCCCCCCCCCCCCCC-CC-------CCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 2221222111001-----------35421101111111111111-12-------44543200123221111123310157
Q ss_pred EEEEECCCCCEEEEEECCCCCCCCCEEEEEEC-CCEEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEE
Q ss_conf 58999369996999962899999993999917-98058799940688775899999459872589971688774999992
Q 000736 226 AVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1323)
Q Consensus 226 ~slawsPdG~lIAs~~~d~~~~~~~~V~l~e~-nGl~~~ef~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~ 304 (1323)
....+.|.+.+++++..+ ..|.+|+. ++..... +.. +...|.+++|+|+|+.||+++.|+ .|++|+.
T Consensus 188 ~~~~~~~~~~~~~~~~~d------~~v~i~d~~~~~~~~~--~~~-h~~~i~~v~~~p~~~~l~s~s~d~---~i~~~~~ 255 (340)
T d1tbga_ 188 MSLSLAPDTRLFVSGACD------ASAKLWDVREGMCRQT--FTG-HESDINAICFFPNGNAFATGSDDA---TCRLFDL 255 (340)
T ss_dssp EEEEECTTSSEEEEEETT------TEEEEEETTTTEEEEE--ECC-CSSCEEEEEECTTSSEEEEEETTS---CEEEEET
T ss_pred EEECCCCCCCEEEEEECC------CEEEEEECCCCCEEEE--EEC-CCCCEEEEEECCCCCEEEEEECCC---EEEEEEE
T ss_conf 630012442126876057------3699999999948899--957-889858999979989999996999---6999752
Q ss_pred ECCEEEEEEEEEEEC-CCC-EEEEECCCCCCEEEEEECCCCEEEEEEEEEEEECCCEEEEEEECCEEEEEECCCCCCCCC
Q ss_conf 077567776999825-983-999991599927999944994999999995210899069999199799942577679998
Q 000736 305 SNNHWYLKYEIRYLR-RDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPP 382 (1323)
Q Consensus 305 ~n~~wyLkqel~~~~-~~~-~~v~W~p~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~i~lt~l~~~~vPpP 382 (1323)
.+..... .+.... ... ..+.|+|++.. |.+++.+|.+. +|+.. . +..
T Consensus 256 ~~~~~~~--~~~~~~~~~~i~~~~~s~~~~~-l~~g~~dg~i~----iwd~~--~--------~~~-------------- 304 (340)
T d1tbga_ 256 RADQELM--TYSHDNIICGITSVSFSKSGRL-LLAGYDDFNCN----VWDAL--K--------ADR-------------- 304 (340)
T ss_dssp TTTEEEE--EECCTTCCSCEEEEEECSSSCE-EEEEETTSCEE----EEETT--T--------CCE--------------
T ss_pred CCCCCCC--CCCCCCCCCCEEEEEECCCCCE-EEEEECCCEEE----EEECC--C--------CCE--------------
T ss_conf 1221111--1112244574589999899999-99997979899----99999--9--------939--------------
Q ss_pred CEEEEE-CCCCCEEEEEEECCCCCCEEEEEECCCCEEEEE
Q ss_conf 301210-289988999992299999999998898199997
Q 000736 383 MYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1323)
Q Consensus 383 m~~~~l-~~~~~V~~VaFspdg~~~~LAs~s~Dg~I~lw~ 421 (1323)
..++ .|.++|++++|+|++ +.||+++.||+|++|+
T Consensus 305 --~~~~~~H~~~V~~l~~s~d~--~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 305 --AGVLAGHDNRVSCLGVTDDG--MAVATGSWDSFLKIWN 340 (340)
T ss_dssp --EEEECCCSSCEEEEEECTTS--SCEEEEETTSCEEEEC
T ss_pred --EEEECCCCCCEEEEEEECCC--CEEEEECCCCEEEEEC
T ss_conf --89984899978999990899--9999990699799859
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=4.1e-26 Score=199.20 Aligned_cols=288 Identities=13% Similarity=0.135 Sum_probs=162.5
Q ss_pred CCCCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEE-EEE-CEECCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 2223579999789999903999899996899599996899919-991-00359599999937899699996996499994
Q 000736 67 IEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVV-GRVEGGVRFISPSPDGDLLGVTTGFGQILVMT 144 (1323)
Q Consensus 67 ~~~~~~~~~~~V~~i~~spd~~~La~as~dG~I~lw~~~~~~~-e~v-g~~~~~I~~~awSPDG~~LA~~s~d~tI~l~t 144 (1323)
+.+| .+.|++++|+||++.|++++.||+|++|+..+++. ... ..|.+.|.+++|+|||+++ +++.|+++.+|.
T Consensus 8 ~~GH----~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~-~~~~d~~v~~~~ 82 (299)
T d1nr0a2 8 RYGH----NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF-TVSWDDHLKVVP 82 (299)
T ss_dssp ECCC----SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE-EEETTTEEEEEC
T ss_pred CCCC----CCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCEEE-CCCCEEEEEEEC
T ss_conf 4888----87828999979999999990899299999999968899837887748998840331121-023102688731
Q ss_pred ECCCEEEEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCC
Q ss_conf 04721012320346797400147624689985789990688579992255445588988999979999366641567985
Q 000736 145 HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFM 224 (1323)
Q Consensus 145 ~~~d~~~e~~l~~~~~~~~Vs~tqf~~~d~~v~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~g~ 224 (1323)
........... ....+...+..++|++||++++ +++ ++.+++|+. ++..... ....
T Consensus 83 ~~~~~~~~~~~------------~~~~~~~~~~~~~~s~~g~~~~-~~~-------~~~i~~~~~--~~~~~~~--~~~~ 138 (299)
T d1nr0a2 83 AGGSGVDSSKA------------VANKLSSQPLGLAVSADGDIAV-AAC-------YKHIAIYSH--GKLTEVP--ISYN 138 (299)
T ss_dssp SSSSSSCTTSC------------CEEECSSCEEEEEECTTSSCEE-EEE-------SSEEEEEET--TEEEEEE--CSSC
T ss_pred CCCCCCCCCCC------------CCCCCCCCCCCCCCCCCCCCCC-CCC-------CCCCCCCCC--CCCCCCC--CCCC
T ss_conf 67762011100------------0111134432100112211111-222-------222211111--1111101--1112
Q ss_pred EEEEEECCCCCEEEEEECCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEE
Q ss_conf 45899936999699996289999999399991798058799940688775899999459872589971688774999992
Q 000736 225 GAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1323)
Q Consensus 225 ~~slawsPdG~lIAs~~~d~~~~~~~~V~l~e~nGl~~~ef~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~ 304 (1323)
..+++|+|+|+++|+++.+ ..|.+|+..+.......... +...|.+++|+|+++.|++++.++ .|++|+.
T Consensus 139 ~~~~~~s~~~~~l~~g~~d------g~i~~~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~---~i~~~~~ 208 (299)
T d1nr0a2 139 SSCVALSNDKQFVAVGGQD------SKVHVYKLSGASVSEVKTIV-HPAEITSVAFSNNGAFLVATDQSR---KVIPYSV 208 (299)
T ss_dssp EEEEEECTTSCEEEEEETT------SEEEEEEEETTEEEEEEEEE-CSSCEEEEEECTTSSEEEEEETTS---CEEEEEG
T ss_pred CCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCC
T ss_conf 3322111111111111111------11111111111111111111-111111111111111111111111---1111111
Q ss_pred ECCEEE-EEEEEEEECCCCEEEEECCCCCCEEEEEECCCCEEEEEEEEEEEECCCEEEEEEECCEEEEEECCCCCCCCCC
Q ss_conf 077567-7769998259839999915999279999449949999999952108990699991997999425776799983
Q 000736 305 SNNHWY-LKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPM 383 (1323)
Q Consensus 305 ~n~~wy-Lkqel~~~~~~~~~v~W~p~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~i~lt~l~~~~vPpPm 383 (1323)
.+.... ....+..+......+.|+|++.. +..+..+|.+. +|+ ++..... +.
T Consensus 209 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~-l~sgs~dg~i~----iwd---------------------~~~~~~~-~~ 261 (299)
T d1nr0a2 209 ANNFELAHTNSWTFHTAKVACVSWSPDNVR-LATGSLDNSVI----VWN---------------------MNKPSDH-PI 261 (299)
T ss_dssp GGTTEESCCCCCCCCSSCEEEEEECTTSSE-EEEEETTSCEE----EEE---------------------TTCTTSC-CE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EEEECCCCEEE----EEE---------------------CCCCCCC-EE
T ss_conf 111111111111111111111124666451-38882899799----998---------------------9999731-48
Q ss_pred EEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECC
Q ss_conf 0121028998899999229999999999889819999789
Q 000736 384 YLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1323)
Q Consensus 384 ~~~~l~~~~~V~~VaFspdg~~~~LAs~s~Dg~I~lw~~~ 423 (1323)
......+...|..+.|. ++ +.|++++.||+|++|+++
T Consensus 262 ~~~~~~~~~~v~~~~~~-~~--~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 262 IIKGAHAMSSVNSVIWL-NE--TTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp EETTSSTTSCEEEEEEE-ET--TEEEEEETTSCEEEEECC
T ss_pred EEECCCCCCCEEEEEEC-CC--CEEEEEECCCEEEEEECC
T ss_conf 98348988968999977-98--999999289979999444
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=6.3e-26 Score=197.81 Aligned_cols=312 Identities=15% Similarity=0.096 Sum_probs=219.0
Q ss_pred EEECCCCEEEEECEECCCEEEEEECCCCCEEEEEECCCCEEEEEE-CCCEEEEEEECCCCCCCEECCCCCCCCCCCEEEE
Q ss_conf 996899919991003595999999378996999969964999940-4721012320346797400147624689985789
Q 000736 101 LHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1323)
Q Consensus 101 lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tI~l~t~-~~d~~~e~~l~~~~~~~~Vs~tqf~~~d~~v~~I 179 (1323)
.|.+.......+.+|.+.|++++|||||++||+++.|++|++|+. .++.+.. |.+|...+.++
T Consensus 2 ~w~p~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~----------------~~~h~~~V~~~ 65 (317)
T d1vyhc1 2 EWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT----------------LKGHTDSVQDI 65 (317)
T ss_dssp CCCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEE----------------ECCCSSCEEEE
T ss_pred CCCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEE----------------EECCCCCEEEE
T ss_conf 36898984489858888768999938989999993899299998999979999----------------95788867777
Q ss_pred EEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEECC-
Q ss_conf 9906885799922554455889889999799993666415679854589993699969999628999999939999179-
Q 000736 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN- 258 (1323)
Q Consensus 180 sWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~g~~~slawsPdG~lIAs~~~d~~~~~~~~V~l~e~n- 258 (1323)
+|+++|.+++ .+. .+..+.+|+............+...+.++.|+|+|+.+++++.+ ..+.+|+..
T Consensus 66 ~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------~~~~~~~~~~ 132 (317)
T d1vyhc1 66 SFDHSGKLLA-SCS------ADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD------KTIKMWEVQT 132 (317)
T ss_dssp EECTTSSEEE-EEE------TTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETT------SEEEEEETTT
T ss_pred EEECCCCCCC-CCC------CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCC------CCEEEEECCC
T ss_conf 6301111011-111------11110111001111111100000000000016998557765267------5235751144
Q ss_pred CEEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEEEEEEEEECCCCEEEEECCCCCCEEEEE
Q ss_conf 80587999406887758999994598725899716887749999920775677769998259839999915999279999
Q 000736 259 GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICW 338 (1323)
Q Consensus 259 Gl~~~ef~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~n~~wyLkqel~~~~~~~~~v~W~p~~~~~L~~~ 338 (1323)
+..... +.. +...+..++|+||+.+||+++.|+ .|++|+..+... ...+..+......+.|+|+.... .+.
T Consensus 133 ~~~~~~--~~~-~~~~~~~~~~~~~~~~l~~~~~d~---~v~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~-~~~ 203 (317)
T d1vyhc1 133 GYCVKT--FTG-HREWVRMVRPNQDGTLIASCSNDQ---TVRVWVVATKEC--KAELREHRHVVECISWAPESSYS-SIS 203 (317)
T ss_dssp CCEEEE--EEC-CSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTCCE--EEEECCCSSCEEEEEECCSCGGG-GGG
T ss_pred CEEEEE--ECC-CCCCCEEEECCCCCCEEEEEECCC---EEEEEEECCCEE--EEEEECCCCCCEEEEEEECCCCC-EEE
T ss_conf 303468--716-777630000166799999992798---299975125403--47882477873379986325641-110
Q ss_pred ECCCCEEEEEEEEEEEECCCEEEEEEECCEEEEEECCCCCCCCCCEEEEE-CCCCCEEEEEEECCCCCCEEEEEECCCCE
Q ss_conf 44994999999995210899069999199799942577679998301210-28998899999229999999999889819
Q 000736 339 TLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCL 417 (1323)
Q Consensus 339 ~~~g~~~~~~~~~~~~~~d~~~v~viDg~~i~lt~l~~~~vPpPm~~~~l-~~~~~V~~VaFspdg~~~~LAs~s~Dg~I 417 (1323)
...+.... .. ...+...+....+..+.+|+++.. .+..++ .|...|.+++|+|++ +.|++++.||+|
T Consensus 204 ~~~~~~~~----~~-~~~~~~~~~~~~d~~i~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~dg~i 271 (317)
T d1vyhc1 204 EATGSETK----KS-GKPGPFLLSGSRDKTIKMWDVSTG-----MCLMTLVGHDNWVRGVLFHSGG--KFILSCADDKTL 271 (317)
T ss_dssp GCCSCC------------CCEEEEEETTSEEEEEETTTT-----EEEEEEECCSSCEEEEEECSSS--SCEEEEETTTEE
T ss_pred CCCCCEEE----EE-CCCCCEEEECCCCCEEEEEECCCC-----CEEEEEECCCCCEEEEEECCCC--CEEEEEECCCEE
T ss_conf 34563034----30-258861475169978999888999-----6889996889987999987999--999999798949
Q ss_pred EEEECCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCCEEEEE
Q ss_conf 99978998852223597124742024456683799999449849999826998702899
Q 000736 418 CVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFR 476 (1323)
Q Consensus 418 ~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~ 476 (1323)
++|+..+......+. .|.+.+..++|+|++.+|++++.+ .++.+|
T Consensus 272 ~iwd~~~~~~~~~~~------------~h~~~V~~~~~s~~~~~l~s~s~D--g~i~iW 316 (317)
T d1vyhc1 272 RVWDYKNKRCMKTLN------------AHEHFVTSLDFHKTAPYVVTGSVD--QTVKVW 316 (317)
T ss_dssp EEECCTTSCCCEEEE------------CCSSCEEEEEECSSSSCEEEEETT--SEEEEE
T ss_pred EEEECCCCCEEEEEC------------CCCCCEEEEEECCCCCEEEEEECC--CEEEEE
T ss_conf 999999991999992------------899988999994999999999289--949982
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.96 E-value=3.2e-24 Score=185.61 Aligned_cols=290 Identities=14% Similarity=0.104 Sum_probs=191.9
Q ss_pred EEEECEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCEEEEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCCCEE
Q ss_conf 99910035959999993789969999699649999404721012320346797400147624689985789990688579
Q 000736 109 TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYF 188 (1323)
Q Consensus 109 ~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tI~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~d~~v~~IsWs~DG~~l 188 (1323)
..+...|.++|++++|||||++||+++.|++|++|+.. +........ ..|...+.+++|+|||+++
T Consensus 5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~----~~~~~~~~~----------~~h~~~v~~v~~~~~g~~~ 70 (299)
T d1nr0a2 5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS----TGISNRVFP----------DVHATMITGIKTTSKGDLF 70 (299)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT----TCCEEECSS----------CSCSSCEEEEEECTTSCEE
T ss_pred CEECCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECC----CCCEEEEEC----------CCCCCCEEEEEEECCCEEE
T ss_conf 36848888782899997999999999089929999999----996889983----------7887748998840331121
Q ss_pred EEEECCCCCCCCCCEEEEEECCCCCEE---EEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEECCCEEEEEE
Q ss_conf 992255445588988999979999366---64156798545899936999699996289999999399991798058799
Q 000736 189 ATLSEFCNSSKLHKRLKVWERDSGTLQ---ASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSF 265 (1323)
Q Consensus 189 Atvss~d~~~~~d~~irVWd~~~G~l~---~t~e~~~g~~~slawsPdG~lIAs~~~d~~~~~~~~V~l~e~nGl~~~ef 265 (1323)
+ +++ ++.+++|+....... .....+...+.+++|+|+|++++++..+ .+.+|+.... .+
T Consensus 71 ~-~~~-------d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~-------~i~~~~~~~~--~~- 132 (299)
T d1nr0a2 71 T-VSW-------DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK-------HIAIYSHGKL--TE- 132 (299)
T ss_dssp E-EET-------TTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESS-------EEEEEETTEE--EE-
T ss_pred C-CCC-------EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCC--CC-
T ss_conf 0-231-------0268873167762011100011113443210011221111122222-------2211111111--11-
Q ss_pred EECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEEEEEEEEECCCCEEEEECCCCCCEEEEEECCCCEE
Q ss_conf 94068877589999945987258997168877499999207756777699982598399999159992799994499499
Q 000736 266 DINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQIT 345 (1323)
Q Consensus 266 ~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~n~~wyLkqel~~~~~~~~~v~W~p~~~~~L~~~~~~g~~~ 345 (1323)
.. ....+..++|+||++.|++++.|+ .|++|+..+...... ....+......+.|+|++.. +.+++.+|.+.
T Consensus 133 -~~--~~~~~~~~~~s~~~~~l~~g~~dg---~i~~~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~ 204 (299)
T d1nr0a2 133 -VP--ISYNSSCVALSNDKQFVAVGGQDS---KVHVYKLSGASVSEV-KTIVHPAEITSVAFSNNGAF-LVATDQSRKVI 204 (299)
T ss_dssp -EE--CSSCEEEEEECTTSCEEEEEETTS---EEEEEEEETTEEEEE-EEEECSSCEEEEEECTTSSE-EEEEETTSCEE
T ss_pred -CC--CCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC
T ss_conf -01--111233221111111111111111---111111111111111-11111111111111111111-11111111111
Q ss_pred EEEEEEEEEECCCEEEEEEECCEEEEEECCCCCCCCCCEEEEE-CCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCC
Q ss_conf 9999995210899069999199799942577679998301210-289988999992299999999998898199997899
Q 000736 346 TYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1323)
Q Consensus 346 ~~~~~~~~~~~d~~~v~viDg~~i~lt~l~~~~vPpPm~~~~l-~~~~~V~~VaFspdg~~~~LAs~s~Dg~I~lw~~~~ 424 (1323)
.|+.. ++..+ . ....+ .|...|.+++|+|++ +.||+++.||+|++|+...
T Consensus 205 ----~~~~~----------~~~~~-----------~--~~~~~~~h~~~v~~l~~s~~~--~~l~sgs~dg~i~iwd~~~ 255 (299)
T d1nr0a2 205 ----PYSVA----------NNFEL-----------A--HTNSWTFHTAKVACVSWSPDN--VRLATGSLDNSVIVWNMNK 255 (299)
T ss_dssp ----EEEGG----------GTTEE-----------S--CCCCCCCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTC
T ss_pred ----CCCCC----------CCCCC-----------C--CCCCCCCCCCCCCCCCCCCCC--CCEEEECCCCEEEEEECCC
T ss_conf ----11111----------11111-----------1--111111111111111246664--5138882899799998999
Q ss_pred CCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCCEEEEEEEE
Q ss_conf 8852223597124742024456683799999449849999826998702899831
Q 000736 425 PDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGAT 479 (1323)
Q Consensus 425 ~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~ 479 (1323)
......... ...+...+..+.|.+++ ++++++.+ ..+.+|++.
T Consensus 256 ~~~~~~~~~---------~~~~~~~v~~~~~~~~~-~l~s~s~D--~~i~iWdl~ 298 (299)
T d1nr0a2 256 PSDHPIIIK---------GAHAMSSVNSVIWLNET-TIVSAGQD--SNIKFWNVP 298 (299)
T ss_dssp TTSCCEEET---------TSSTTSCEEEEEEEETT-EEEEEETT--SCEEEEECC
T ss_pred CCCCEEEEE---------CCCCCCCEEEEEECCCC-EEEEEECC--CEEEEEECC
T ss_conf 973148983---------48988968999977989-99999289--979999444
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.95 E-value=3.5e-25 Score=192.52 Aligned_cols=195 Identities=10% Similarity=0.008 Sum_probs=106.4
Q ss_pred EEEEC-CCCEEEEEECCCCEEEEECCCCEEEEECEECCCEEEEEECCCCCEEEEEECCC--CEEEEEECCCEEEEEEECC
Q ss_conf 99903-99989999689959999689991999100359599999937899699996996--4999940472101232034
Q 000736 81 FDYLM-EKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFG--QILVMTHDWDLLYENPLEE 157 (1323)
Q Consensus 81 i~~sp-d~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~--tI~l~t~~~d~~~e~~l~~ 157 (1323)
-.||| ||+.+|.++ +|.|.+|+..++.+..++ |.+.|.+++|||||+.|++++.++ .|.+|+.......
T Consensus 8 ~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~~-~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~------ 79 (360)
T d1k32a3 8 EDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVP-EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE------ 79 (360)
T ss_dssp EEEEECGGGCEEEEE-TTEEEEECTTSSBEEECS-CCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE------
T ss_pred CCCCCCCCCEEEEEE-CCEEEEEECCCCCEEECC-CCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEE------
T ss_conf 514688999999998-996999989999489916-999888899989999999999289989999989999488------
Q ss_pred CCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEE
Q ss_conf 67974001476246899857899906885799922554455889889999799993666415679854589993699969
Q 000736 158 LAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANI 237 (1323)
Q Consensus 158 ~~~~~~Vs~tqf~~~d~~v~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~g~~~slawsPdG~lI 237 (1323)
++..|...+..++|+|||++++ +++ .++.+++|+.++++.......+...+.+++|+|+|++|
T Consensus 80 ----------~~~~~~~~v~~~~~spdg~~l~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 142 (360)
T d1k32a3 80 ----------KFEENLGNVFAMGVDRNGKFAV-VAN------DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFI 142 (360)
T ss_dssp ----------ECCCCCCSEEEEEECTTSSEEE-EEE------TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEE
T ss_pred ----------EEECCCCEEEEEEECCCCCCCC-EEC------CCCCCCCCCCCCCCEEEEEECCCCCCCCHHHCCCEEEE
T ss_conf ----------7508971277412114543210-001------11110000012221000000135520230121322566
Q ss_pred EEEECCCC----CCCCCEEEEEECCCEEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEEC
Q ss_conf 99962899----9999939999179805879994068877589999945987258997168877499999207
Q 000736 238 AAVYDRKS----ENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1323)
Q Consensus 238 As~~~d~~----~~~~~~V~l~e~nGl~~~ef~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~n 306 (1323)
|.+..+.+ ......+.+|+..+..... +. .+...+..++|+|||+.|+.++.++ .+.+|+...
T Consensus 143 a~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~--~~-~~~~~~~~~~~spdg~~l~~~s~~~---~~~~~d~~~ 209 (360)
T d1k32a3 143 AYGFPLKHGETDGYVMQAIHVYDMEGRKIFA--AT-TENSHDYAPAFDADSKNLYYLSYRS---LDPSPDRVV 209 (360)
T ss_dssp EEEEEECSSTTCSCCEEEEEEEETTTTEEEE--CS-CSSSBEEEEEECTTSCEEEEEESCC---CCCEECSSS
T ss_pred EEECCCCCCCEEECCCCCEEEECCCCCCEEE--EC-CCCCCCCCCCCCCCCCEEEEEECCC---CEECCCCCC
T ss_conf 5212331211000256542663045571353--03-5432211001257799999995998---557533354
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=5.9e-24 Score=183.77 Aligned_cols=212 Identities=14% Similarity=0.051 Sum_probs=141.5
Q ss_pred CCCEEEEEEECCCCEEEEEECCCC-EEEEECCC---C-EEEEECEECCCEEEEEECC--CCCEEEEEECCCCEEEEEEC-
Q ss_conf 997899999039998999968995-99996899---9-1999100359599999937--89969999699649999404-
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGL-LLLHSVDG---N-ATEVVGRVEGGVRFISPSP--DGDLLGVTTGFGQILVMTHD- 146 (1323)
Q Consensus 75 ~~~V~~i~~spd~~~La~as~dG~-I~lw~~~~---~-~~e~vg~~~~~I~~~awSP--DG~~LA~~s~d~tI~l~t~~- 146 (1323)
.+.+++++|+|+++.|+.++.++. |..|+... . .....|++...|++++||| ||++||+++.||+|++|+..
T Consensus 17 ~~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~ 96 (325)
T d1pgua1 17 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF 96 (325)
T ss_dssp TTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEECC
T ss_conf 99847999989979999996998799997688887650289907899988999981179997999994899779854058
Q ss_pred CCEEEEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEE
Q ss_conf 72101232034679740014762468998578999068857999225544558898899997999936664156798545
Q 000736 147 WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGA 226 (1323)
Q Consensus 147 ~d~~~e~~l~~~~~~~~Vs~tqf~~~d~~v~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~g~~~ 226 (1323)
........... ...+..+...+.+++|++||++++ +++. +.++.+++|+.++|+...+...|...+.
T Consensus 97 ~~~~~~~~~~~--------~~~~~~~~~~v~~v~~s~~~~~l~-~~~~----~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 163 (325)
T d1pgua1 97 DKESNSVEVNV--------KSEFQVLAGPISDISWDFEGRRLC-VVGE----GRDNFGVFISWDSGNSLGEVSGHSQRIN 163 (325)
T ss_dssp EGGGTEEEEEE--------EEEEECCSSCEEEEEECTTSSEEE-EEEC----CSSCSEEEEETTTCCEEEECCSCSSCEE
T ss_pred CCCEEEEECCC--------CCCCCCCCCCEEEEEECCCCCCCC-EEEC----CCCCEEEEEEECCCCCCEEEEECCCCCC
T ss_conf 86215651002--------541136567377999899988220-1001----2440478885023311001200123432
Q ss_pred EEEECCCCCE-EEEEECCCCCCCCCEEEEEECCCEEE-EEEEECCCCCCCEEEEEECCC-CCEEEEEECCCCCCEEEEEE
Q ss_conf 8999369996-99996289999999399991798058-799940688775899999459-87258997168877499999
Q 000736 227 VLEWMPSGAN-IAAVYDRKSENKCPSIVFYERNGLER-SSFDINEQIDSTVELLKWNCM-SDLLAAVVRFEEYDSVKICF 303 (1323)
Q Consensus 227 slawsPdG~l-IAs~~~d~~~~~~~~V~l~e~nGl~~-~ef~l~~~~~~~V~~laWSpD-g~~LA~~~~d~~~~~VqlW~ 303 (1323)
+++|+|++.. +++++.| ..|.+|+....+. ..+.....+...|.+++|+|| +.+|++++.|+ .|++|+
T Consensus 164 ~~~~~~~~~~~~~~~~~d------~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~---~i~iwd 234 (325)
T d1pgua1 164 ACHLKQSRPMRSMTVGDD------GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR---KISCFD 234 (325)
T ss_dssp EEEECSSSSCEEEEEETT------TEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTC---CEEEEE
T ss_pred CCCCCCCCCCEEEEEECC------CCCCCCCCCCCCCCEECCCCCCCCCCCEEEEECCCCCEECCCCCCCC---CEEEEE
T ss_conf 111123432068886211------12211112211000000001577775277630345310000112332---101343
Q ss_pred EECCE
Q ss_conf 20775
Q 000736 304 FSNNH 308 (1323)
Q Consensus 304 ~~n~~ 308 (1323)
..+..
T Consensus 235 ~~~~~ 239 (325)
T d1pgua1 235 GKSGE 239 (325)
T ss_dssp TTTCC
T ss_pred ECCCC
T ss_conf 00122
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=4.5e-22 Score=170.31 Aligned_cols=287 Identities=10% Similarity=0.039 Sum_probs=190.1
Q ss_pred EEECEECCCEEEEEECCCCCEEEEEECCCCEEEEEE-CCCEEEEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCCCEE
Q ss_conf 991003595999999378996999969964999940-4721012320346797400147624689985789990688579
Q 000736 110 EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYF 188 (1323)
Q Consensus 110 e~vg~~~~~I~~~awSPDG~~LA~~s~d~tI~l~t~-~~d~~~e~~l~~~~~~~~Vs~tqf~~~d~~v~~IsWs~DG~~l 188 (1323)
.++.+|.+.|++++|||||++||+++.||+|++|+. .+..+.... .|...+.+++|+|||.++
T Consensus 49 ~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~----------------~~~~~v~~v~~~~~~~~l 112 (340)
T d1tbga_ 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP----------------LRSSWVMTCAYAPSGNYV 112 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEE----------------CSCSCEEEEEECTTSSEE
T ss_pred EEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEE----------------CCCCCEEEEEEECCCEEE
T ss_conf 7988878988899998999999999789955563102102579972----------------465337756760121144
Q ss_pred EEEECCCCCCCCCCEEEEEECCCC----CEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEECCCEEEEE
Q ss_conf 992255445588988999979999----3666415679854589993699969999628999999939999179805879
Q 000736 189 ATLSEFCNSSKLHKRLKVWERDSG----TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSS 264 (1323)
Q Consensus 189 Atvss~d~~~~~d~~irVWd~~~G----~l~~t~e~~~g~~~slawsPdG~lIAs~~~d~~~~~~~~V~l~e~nGl~~~e 264 (1323)
+ +++. ++.+++|+.... ........+.+......+.++.. +.....+ .....+.........
T Consensus 113 ~-~~~~------d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~ 178 (340)
T d1tbga_ 113 A-CGGL------DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGD------TTCALWDIETGQQTT 178 (340)
T ss_dssp E-EEET------TCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTE-EEEEETT------TEEEEEETTTTEEEE
T ss_pred E-EECC------CCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC-CCCCCCC------CCCCCCCCCCCCCCC
T ss_conf 3-1013------320101332222122211100135421101111111111-1111244------543200123221111
Q ss_pred EEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEEEEEEEEECCCCEEEEECCCCCCEEEEEECCCCE
Q ss_conf 99406887758999994598725899716887749999920775677769998259839999915999279999449949
Q 000736 265 FDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQI 344 (1323)
Q Consensus 265 f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~n~~wyLkqel~~~~~~~~~v~W~p~~~~~L~~~~~~g~~ 344 (1323)
. . ......+....+.+++.+++++..|+ .|++|+..+... .+.+..+.....++.|+|++.. |.+++.+|.+
T Consensus 179 ~-~-~~~~~~~~~~~~~~~~~~~~~~~~d~---~v~i~d~~~~~~--~~~~~~h~~~i~~v~~~p~~~~-l~s~s~d~~i 250 (340)
T d1tbga_ 179 T-F-TGHTGDVMSLSLAPDTRLFVSGACDA---SAKLWDVREGMC--RQTFTGHESDINAICFFPNGNA-FATGSDDATC 250 (340)
T ss_dssp E-E-ECCSSCEEEEEECTTSSEEEEEETTT---EEEEEETTTTEE--EEEECCCSSCEEEEEECTTSSE-EEEEETTSCE
T ss_pred C-C-CCCCEEEEEECCCCCCCEEEEEECCC---EEEEEECCCCCE--EEEEECCCCCEEEEEECCCCCE-EEEEECCCEE
T ss_conf 1-2-33101576300124421268760573---699999999948--8999578898589999799899-9999699969
Q ss_pred EEEEEEEEEEECCCEEEEEEECCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCC
Q ss_conf 99999995210899069999199799942577679998301210289988999992299999999998898199997899
Q 000736 345 TTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1323)
Q Consensus 345 ~~~~~~~~~~~~d~~~v~viDg~~i~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFspdg~~~~LAs~s~Dg~I~lw~~~~ 424 (1323)
. .|+.. ... .+... ....+...|.+++|+|++ +.|++++.||+|++|+..+
T Consensus 251 ~----~~~~~--~~~--------~~~~~-------------~~~~~~~~i~~~~~s~~~--~~l~~g~~dg~i~iwd~~~ 301 (340)
T d1tbga_ 251 R----LFDLR--ADQ--------ELMTY-------------SHDNIICGITSVSFSKSG--RLLLAGYDDFNCNVWDALK 301 (340)
T ss_dssp E----EEETT--TTE--------EEEEE-------------CCTTCCSCEEEEEECSSS--CEEEEEETTSCEEEEETTT
T ss_pred E----EEEEC--CCC--------CCCCC-------------CCCCCCCCEEEEEECCCC--CEEEEEECCCEEEEEECCC
T ss_conf 9----97521--221--------11111-------------122445745899998999--9999997979899999999
Q ss_pred CCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCCEEEEEE
Q ss_conf 88522235971247420244566837999994498499998269987028998
Q 000736 425 PDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRG 477 (1323)
Q Consensus 425 ~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~ 477 (1323)
......+. .|.+.+..++|+|++.+|++++.+ ..+.+|+
T Consensus 302 ~~~~~~~~------------~H~~~V~~l~~s~d~~~l~s~s~D--g~v~iWd 340 (340)
T d1tbga_ 302 ADRAGVLA------------GHDNRVSCLGVTDDGMAVATGSWD--SFLKIWN 340 (340)
T ss_dssp CCEEEEEC------------CCSSCEEEEEECTTSSCEEEEETT--SCEEEEC
T ss_pred CCEEEEEC------------CCCCCEEEEEEECCCCEEEEECCC--CEEEEEC
T ss_conf 93989984------------899978999990899999999069--9799859
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=8.7e-22 Score=168.23 Aligned_cols=320 Identities=12% Similarity=0.104 Sum_probs=148.9
Q ss_pred CCCCCCCCCCCE-EEEEEECCCCEEEEEECCCCEEEEECCCCEE-EEECEECCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 222357999978-9999903999899996899599996899919-99100359599999937899699996996499994
Q 000736 67 IEHIDLEPGDSI-TAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT 144 (1323)
Q Consensus 67 ~~~~~~~~~~~V-~~i~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~d~tI~l~t 144 (1323)
|++|. +.| +++ +++++.|++|+.||+|++||..++++ ..+..|+++|++++|||| ..|++++.|++|.+|.
T Consensus 8 L~GH~----~~vitc~--~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~ 80 (355)
T d1nexb2 8 LRGHM----TSVITCL--QFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD 80 (355)
T ss_dssp EECCS----SSCEEEE--EEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEE
T ss_pred ECCCC----CCCEEEE--EECCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC-CEEEEEECCCCCCCCC
T ss_conf 89837----8869999--988999999918990999989999399999789998899998699-9999996452443211
Q ss_pred ECCCEEEEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCC---
Q ss_conf 04721012320346797400147624689985789990688579992255445588988999979999366641567---
Q 000736 145 HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK--- 221 (1323)
Q Consensus 145 ~~~d~~~e~~l~~~~~~~~Vs~tqf~~~d~~v~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~--- 221 (1323)
............. .+........+.+++.+++ +++ .++.+++|+..++.........
T Consensus 81 ~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~-~~~------~d~~i~iw~~~~~~~~~~~~~~~~~ 140 (355)
T d1nexb2 81 IKKGCCTHVFEGH-------------NSTVRCLDIVEYKNIKYIV-TGS------RDNTLHVWKLPKESSVPDHGEEHDY 140 (355)
T ss_dssp TTTTEEEEEECCC-------------SSCEEEEEEEEETTEEEEE-EEE------TTSEEEEEECCC-----------CC
T ss_pred CCCCCCCCCCCCC-------------CCCCCCCCCCCCCCCCEEE-EEC------CCCCEEEEECCCCCEECCCCCCCEE
T ss_conf 1111111111001-------------1111111111112322045-543------8886899985677300124652000
Q ss_pred ------------------CCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCEEEEEECCC
Q ss_conf ------------------98545899936999699996289999999399991798058799940688775899999459
Q 000736 222 ------------------AFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCM 283 (1323)
Q Consensus 222 ------------------~g~~~slawsPdG~lIAs~~~d~~~~~~~~V~l~e~nGl~~~ef~l~~~~~~~V~~laWSpD 283 (1323)
.......++.|+|++++++..+ ..|.+|+....+.- .... .....+..+.|+|+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d------~~i~~~d~~~~~~~-~~~~-~~~~~~~~~~~~~~ 212 (355)
T d1nexb2 141 PLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYD------NTLIVWDVAQMKCL-YILS-GHTDRIYSTIYDHE 212 (355)
T ss_dssp CEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETT------SCEEEEETTTTEEE-EEEC-CCSSCEEEEEEETT
T ss_pred CCCEECCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCC------CEEEEEECCCCCCE-EEEE-CCCCCCCCCCCCCC
T ss_conf 1000001123401210110022210000256334421144------20444301311000-1100-01233211111121
Q ss_pred CCEEEEEECCCCCCEEEEEEEECCEEEEEEEEEEECCCCEEEEECCCCCCEEEEEECCCCEEEEEEEEEEEECCCEEEEE
Q ss_conf 87258997168877499999207756777699982598399999159992799994499499999999521089906999
Q 000736 284 SDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALV 363 (1323)
Q Consensus 284 g~~LA~~~~d~~~~~VqlW~~~n~~wyLkqel~~~~~~~~~v~W~p~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~v 363 (1323)
+..+++++.|+ +|++|+..+... ...+..+......+.|++. .|..++.+|.+. .|+
T Consensus 213 ~~~~~~~~~d~---~i~i~d~~~~~~--~~~~~~h~~~v~~~~~~~~---~l~~~~~dg~i~----iwd----------- 269 (355)
T d1nexb2 213 RKRCISASMDT---TIRIWDLENGEL--MYTLQGHTALVGLLRLSDK---FLVSAAADGSIR----GWD----------- 269 (355)
T ss_dssp TTEEEEEETTS---CEEEEETTTCCE--EEEECCCSSCCCEEEECSS---EEEEECTTSEEE----EEE-----------
T ss_pred CEEEECCCCCC---EEEEEECCCCCC--CCCCCCCCCCCCCCCCCCC---EEEEEECCCCCC----CCC-----------
T ss_conf 00210124563---687630122111--1111111111111123210---033320111111----111-----------
Q ss_pred EECCEEEEEECCCCCCCCCCEEEEECCCCCEEE-EEEECCCCCCEEEEEECCCCEEEEECCCCCCCCC-CCCCCEEEEEE
Q ss_conf 919979994257767999830121028998899-9992299999999998898199997899885222-35971247420
Q 000736 364 IDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTE-MAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLED-LEGTEFVVEAC 441 (1323)
Q Consensus 364 iDg~~i~lt~l~~~~vPpPm~~~~l~~~~~V~~-VaFspdg~~~~LAs~s~Dg~I~lw~~~~~~~~~~-~~g~~~~~~~~ 441 (1323)
++.. ...... |...+.. .+|++++ +.++++ +||+|++|++.+...... +.
T Consensus 270 ----------~~~~-----~~~~~~-~~~~~~~~~~~~~~~--~~l~~g-~d~~i~vwd~~tg~~~~~~~~--------- 321 (355)
T d1nexb2 270 ----------ANDY-----SRKFSY-HHTNLSAITTFYVSD--NILVSG-SENQFNIYNLRSGKLVHANIL--------- 321 (355)
T ss_dssp ----------TTTC-----CEEEEE-ECTTCCCCCEEEECS--SEEEEE-ETTEEEEEETTTCCBCCSCTT---------
T ss_pred ----------CCCC-----CEECCC-CCCCCEEEEEECCCC--CEEEEE-ECCEEEEEECCCCCEEEEEEC---------
T ss_conf ----------1111-----100012-468822999984999--899998-099799999999979888845---------
Q ss_pred CCCCCCCCEEEEEEECCCEEEEEEECCCCCEEEEEEE
Q ss_conf 2445668379999944984999982699870289983
Q 000736 442 ISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1323)
Q Consensus 442 ~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1323)
.+.+.+..++|+|+. ++++++.+ .++.+|.+
T Consensus 322 ---~~~~~V~~v~~~~~~-~~~~~s~d--g~~~l~~~ 352 (355)
T d1nexb2 322 ---KDADQIWSVNFKGKT-LVAAVEKD--GQSFLEIL 352 (355)
T ss_dssp ---TTCSEEEEEEEETTE-EEEEEESS--SCEEEEEE
T ss_pred ---CCCCCEEEEEECCCE-EEEEEECC--CCEEEEEE
T ss_conf ---899989999983991-99999898--90999999
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=2.6e-22 Score=171.97 Aligned_cols=324 Identities=11% Similarity=0.043 Sum_probs=214.4
Q ss_pred CEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCEEE
Q ss_conf 21579662589899999379728998224433433311202222222235799997899999039998999968995999
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~i~~spd~~~La~as~dG~I~l 101 (1323)
.+.|+ +.+++.|++++.|+.|..||. .+++. +.+ +.+| .+.|.+++|+|+ ..|++++.||+|++
T Consensus 15 vitc~--~~~~~~l~tgs~Dg~i~vWd~--~~~~~---~~~----l~~H----~~~V~~l~~s~~-~~l~s~s~D~~i~i 78 (355)
T d1nexb2 15 VITCL--QFEDNYVITGADDKMIRVYDS--INKKF---LLQ----LSGH----DGGVWALKYAHG-GILVSGSTDRTVRV 78 (355)
T ss_dssp CEEEE--EEETTEEEEEETTTEEEEEET--TTTEE---EEE----EECC----SSCEEEEEEETT-TEEEEEETTCCEEE
T ss_pred CEEEE--EECCCEEEEEECCCEEEEEEC--CCCCE---EEE----EECC----CCCEEEEEECCC-CEEEEEECCCCCCC
T ss_conf 69999--988999999918990999989--99939---999----9789----998899998699-99999964524432
Q ss_pred EECCCCEEE-EEC--EECCCEEEEEECCCCCEEEEEECCCCEEEEEECCC-EEEEEEECCCC---------CCCEECCCC
Q ss_conf 968999199-910--03595999999378996999969964999940472-10123203467---------974001476
Q 000736 102 HSVDGNATE-VVG--RVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWD-LLYENPLEELA---------EGFDVHEPE 168 (1323)
Q Consensus 102 w~~~~~~~e-~vg--~~~~~I~~~awSPDG~~LA~~s~d~tI~l~t~~~d-~~~e~~l~~~~---------~~~~Vs~tq 168 (1323)
|+....... ... ..........++|++..+++++.|++|.+|+..-. ........... ....+ ..
T Consensus 79 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 156 (355)
T d1nexb2 79 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV--GV 156 (355)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEE--EE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEECCCCCCCEECCCEECCCCCCCEE--EE
T ss_conf 1111111111110011111111111112322045543888689998567730012465200010000011234012--10
Q ss_pred CCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCC
Q ss_conf 24689985789990688579992255445588988999979999366641567985458999369996999962899999
Q 000736 169 LSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENK 248 (1323)
Q Consensus 169 f~~~d~~v~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~g~~~slawsPdG~lIAs~~~d~~~~~ 248 (1323)
...|.. ....+.++|.+++ .+. .++.+++|+..+++...+...+.....++.|+|+++.+++++.++
T Consensus 157 ~~~~~~--~v~~~~~~~~~~~-~~~------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~---- 223 (355)
T d1nexb2 157 LRGHMA--SVRTVSGHGNIVV-SGS------YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT---- 223 (355)
T ss_dssp EECCSS--CEEEEEEETTEEE-EEE------TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTS----
T ss_pred EEECCC--CCCCCCCCCCEEE-EEC------CCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCC----
T ss_conf 110022--2100002563344-211------442044430131100011000123321111112100210124563----
Q ss_pred CCEEEEEECC-CEEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEEEEEEEEECCCCEE-EE
Q ss_conf 9939999179-805879994068877589999945987258997168877499999207756777699982598399-99
Q 000736 249 CPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIR-FM 326 (1323)
Q Consensus 249 ~~~V~l~e~n-Gl~~~ef~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~n~~wyLkqel~~~~~~~~~-v~ 326 (1323)
.|.+|+.. +.... .+.. +...|..++|++ +.|++++.|+ +|++|+.++.. +.+.++...... ..
T Consensus 224 --~i~i~d~~~~~~~~--~~~~-h~~~v~~~~~~~--~~l~~~~~dg---~i~iwd~~~~~----~~~~~~~~~~~~~~~ 289 (355)
T d1nexb2 224 --TIRIWDLENGELMY--TLQG-HTALVGLLRLSD--KFLVSAAADG---SIRGWDANDYS----RKFSYHHTNLSAITT 289 (355)
T ss_dssp --CEEEEETTTCCEEE--EECC-CSSCCCEEEECS--SEEEEECTTS---EEEEEETTTCC----EEEEEECTTCCCCCE
T ss_pred --EEEEEECCCCCCCC--CCCC-CCCCCCCCCCCC--CEEEEEECCC---CCCCCCCCCCC----EECCCCCCCCEEEEE
T ss_conf --68763012211111--1111-111111112321--0033320111---11111111111----000124688229999
Q ss_pred ECCCCCCEEEEEECCCCEEEEEEEEEEEECCCEEEEEEECCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEECCCCCC
Q ss_conf 91599927999944994999999995210899069999199799942577679998301210289988999992299999
Q 000736 327 WHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKN 406 (1323)
Q Consensus 327 W~p~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~i~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFspdg~~~ 406 (1323)
|++++. +++...++.+++|+++..-. .......|.+.|++|+|+|+.
T Consensus 290 ~~~~~~---------------------------~l~~g~d~~i~vwd~~tg~~---~~~~~~~~~~~V~~v~~~~~~--- 336 (355)
T d1nexb2 290 FYVSDN---------------------------ILVSGSENQFNIYNLRSGKL---VHANILKDADQIWSVNFKGKT--- 336 (355)
T ss_dssp EEECSS---------------------------EEEEEETTEEEEEETTTCCB---CCSCTTTTCSEEEEEEEETTE---
T ss_pred ECCCCC---------------------------EEEEEECCEEEEEECCCCCE---EEEEECCCCCCEEEEEECCCE---
T ss_conf 849998---------------------------99998099799999999979---888845899989999983991---
Q ss_pred EEEEEECCCCEEEEECC
Q ss_conf 99999889819999789
Q 000736 407 CLAAILSDGCLCVVDLP 423 (1323)
Q Consensus 407 ~LAs~s~Dg~I~lw~~~ 423 (1323)
.+++++.||++.||.++
T Consensus 337 ~~~~~s~dg~~~l~~~d 353 (355)
T d1nexb2 337 LVAAVEKDGQSFLEILD 353 (355)
T ss_dssp EEEEEESSSCEEEEEEE
T ss_pred EEEEEECCCCEEEEEEE
T ss_conf 99999898909999995
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=9e-23 Score=175.29 Aligned_cols=244 Identities=14% Similarity=0.135 Sum_probs=168.9
Q ss_pred CEEEEEEECCCCEEEEEECCCC-EEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEEC--CCCEEEEEECCCC
Q ss_conf 2157966258989999937972-899822443343331120222222223579999789999903--9998999968995
Q 000736 22 ILQFSALDIEQNRLFFASSANN-IYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM--EKEALIVGTSSGL 98 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~-i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~i~~sp--d~~~La~as~dG~ 98 (1323)
.+.+++|+++++.+.+++.+.. |..|+. ...... .+.+ +.+|. ...|++++|+| +++.||+++.||+
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~--~~~~~~-~~~~----~~gh~---~~~v~~v~fsP~~~g~~lasgs~Dg~ 88 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDD--GDSKVP-PVVQ----FTGHG---SSVVTTVKFSPIKGSQYLCSGDESGK 88 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCS--SCCSSC-SEEE----ECTTT---TSCEEEEEECSSTTCCEEEEEETTSE
T ss_pred CEEEEEECCCCCEEEEEECCCEEEEEEEC--CCCCCC-CEEE----EECCC---CCCEEEEEEEECCCCCEEEEEECCCC
T ss_conf 84799998997999999699879999768--888765-0289----90789---99889999811799979999948997
Q ss_pred EEEEECCCC----EEE-----EECEECCCEEEEEECCCCCEEEEEEC--CCCEEEEEECCCEEEEEEECCCCCCCEECCC
Q ss_conf 999968999----199-----91003595999999378996999969--9649999404721012320346797400147
Q 000736 99 LLLHSVDGN----ATE-----VVGRVEGGVRFISPSPDGDLLGVTTG--FGQILVMTHDWDLLYENPLEELAEGFDVHEP 167 (1323)
Q Consensus 99 I~lw~~~~~----~~e-----~vg~~~~~I~~~awSPDG~~LA~~s~--d~tI~l~t~~~d~~~e~~l~~~~~~~~Vs~t 167 (1323)
|++|+.... .++ ....+.++|.+++|||||+.|++++. ++.+.+|. |+. ...+..
T Consensus 89 i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~--~~~--~~~~~~---------- 154 (325)
T d1pgua1 89 VIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFIS--WDS--GNSLGE---------- 154 (325)
T ss_dssp EEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEE--TTT--CCEEEE----------
T ss_pred EEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCCEEEEEE--ECC--CCCCEE----------
T ss_conf 798540588621565100254113656737799989998822010012440478885--023--311001----------
Q ss_pred CCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEE---CCCCCCEEEEEECCC-CCEEEEEECC
Q ss_conf 624689985789990688579992255445588988999979999366641---567985458999369-9969999628
Q 000736 168 ELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS---ELKAFMGAVLEWMPS-GANIAAVYDR 243 (1323)
Q Consensus 168 qf~~~d~~v~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~---e~~~g~~~slawsPd-G~lIAs~~~d 243 (1323)
+.+|...+.+++|+|++.+++.+++ .++.+++|+..+++..... ..+.+.+.+++|+|+ |.++|+++.|
T Consensus 155 -~~~h~~~v~~~~~~~~~~~~~~~~~------~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d 227 (325)
T d1pgua1 155 -VSGHSQRINACHLKQSRPMRSMTVG------DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD 227 (325)
T ss_dssp -CCSCSSCEEEEEECSSSSCEEEEEE------TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT
T ss_pred -EEECCCCCCCCCCCCCCCCEEEEEE------CCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEEECCCCCEECCCCCCC
T ss_conf -2001234321111234320688862------111221111221100000000157777527763034531000011233
Q ss_pred CCCCCCCEEEEEEC-CCEEEEEEEECCC---CCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCE
Q ss_conf 99999993999917-9805879994068---87758999994598725899716887749999920775
Q 000736 244 KSENKCPSIVFYER-NGLERSSFDINEQ---IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1323)
Q Consensus 244 ~~~~~~~~V~l~e~-nGl~~~ef~l~~~---~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~n~~ 308 (1323)
..|.+|+. ++..... +..+ ....+.+++| |||+.|++++.|+ +|++|+..+..
T Consensus 228 ------~~i~iwd~~~~~~~~~--l~~~~~~v~~~~~s~~~-~dg~~l~s~s~D~---~i~iwd~~~~~ 284 (325)
T d1pgua1 228 ------RKISCFDGKSGEFLKY--IEDDQEPVQGGIFALSW-LDSQKFATVGADA---TIRVWDVTTSK 284 (325)
T ss_dssp ------CCEEEEETTTCCEEEE--CCBTTBCCCSCEEEEEE-SSSSEEEEEETTS---EEEEEETTTTE
T ss_pred ------CCEEEEEECCCCCCCC--CCCCCCCCCCCEEEEEC-CCCCEEEEEECCC---EEEEEECCCCC
T ss_conf ------2101343001222111--11111111110000003-6899999995899---39999999997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.9e-19 Score=151.53 Aligned_cols=323 Identities=12% Similarity=0.044 Sum_probs=199.7
Q ss_pred CCCCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEE-EEECEECCCEEEEEECCCCCEEEEEECCCCEEEEEE
Q ss_conf 2223579999789999903999899996899599996899919-991003595999999378996999969964999940
Q 000736 67 IEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH 145 (1323)
Q Consensus 67 ~~~~~~~~~~~V~~i~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~d~tI~l~t~ 145 (1323)
|++| .+.|++ .++++|+.|++|+.||+|++||..++++ ..+..|.++|.+++|+|+ +|++++.|+++.+|..
T Consensus 12 l~GH----~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~ 84 (342)
T d2ovrb2 12 LKGH----DDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNA 84 (342)
T ss_dssp EECS----TTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEET
T ss_pred ECCC----CCCEEE-EEEECCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC--CCCCCEECCCCCCCCC
T ss_conf 8886----875099-99978999999918990999989999799999488999899994798--6321000001111111
Q ss_pred CCCEEEEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCE
Q ss_conf 47210123203467974001476246899857899906885799922554455889889999799993666415679854
Q 000736 146 DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMG 225 (1323)
Q Consensus 146 ~~d~~~e~~l~~~~~~~~Vs~tqf~~~d~~v~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~g~~ 225 (1323)
......... .. +...+....+. +..+. .+. .+..+.+|+..+++..........
T Consensus 85 ~~~~~~~~~-~~--------------~~~~~~~~~~~--~~~~~-~~~------~d~~i~~~~~~~~~~~~~~~~~~~-- 138 (342)
T d2ovrb2 85 ETGECIHTL-YG--------------HTSTVRCMHLH--EKRVV-SGS------RDATLRVWDIETGQCLHVLMGHVA-- 138 (342)
T ss_dssp TTTEEEEEE-CC--------------CSSCEEEEEEE--TTEEE-EEE------TTSEEEEEESSSCCEEEEEECCSS--
T ss_pred CCCCCEECC-CC--------------CCEEEEEEECC--CCCCC-CCC------CCEEEEEEECCCCCCEEEEECCCC--
T ss_conf 100000001-23--------------33047652024--65221-234------440378740355630011100111--
Q ss_pred EEEEECCCCCEEEEEECCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEE
Q ss_conf 58999369996999962899999993999917980587999406887758999994598725899716887749999920
Q 000736 226 AVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1323)
Q Consensus 226 ~slawsPdG~lIAs~~~d~~~~~~~~V~l~e~nGl~~~ef~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~ 305 (1323)
....+.+.+..++.++.+ ..|.+|+....... ..+..+ . .....+++|+..|++++.|+ .|++|+..
T Consensus 139 ~~~~~~~~~~~~~~~~~d------~~i~~~d~~~~~~~-~~~~~~-~--~~~~~~~~~~~~l~s~~~dg---~i~~~d~~ 205 (342)
T d2ovrb2 139 AVRCVQYDGRRVVSGAYD------FMVKVWDPETETCL-HTLQGH-T--NRVYSLQFDGIHVVSGSLDT---SIRVWDVE 205 (342)
T ss_dssp CEEEEEECSSCEEEEETT------SCEEEEEGGGTEEE-EEECCC-S--SCEEEEEECSSEEEEEETTS---CEEEEETT
T ss_pred CCEEECCCCCEEEEECCC------CEEEEEECCCCEEE-EEECCC-C--CCCCCCCCCCCEEEEEECCC---EEEEEECC
T ss_conf 100000133302433589------86999525234366-787275-4--44210068999999995899---39995255
Q ss_pred CCEEEEEEEEEEECCCCEEEEECCCCCCEEEEEECCCCEEEEEEEEEEEECCCEEEEEEECCEEEEEECCCCCCCCCCEE
Q ss_conf 77567776999825983999991599927999944994999999995210899069999199799942577679998301
Q 000736 306 NNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYL 385 (1323)
Q Consensus 306 n~~wyLkqel~~~~~~~~~v~W~p~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~i~lt~l~~~~vPpPm~~ 385 (1323)
.... .+.+..+......+.|+++ .+..++.+|.+. +|++..... ....
T Consensus 206 ~~~~--~~~~~~~~~~v~~~~~~~~---~l~s~s~d~~i~-------------------------iwd~~~~~~--~~~~ 253 (342)
T d2ovrb2 206 TGNC--IHTLTGHQSLTSGMELKDN---ILVSGNADSTVK-------------------------IWDIKTGQC--LQTL 253 (342)
T ss_dssp TCCE--EEEECCCCSCEEEEEEETT---EEEEEETTSCEE-------------------------EEETTTCCE--EEEE
T ss_pred CCEE--EEEECCCCCCEEEEECCCC---EEEEECCCCEEE-------------------------EEECCCCCC--CCCC
T ss_conf 6536--5674166532057706899---999974898899-------------------------986554422--1112
Q ss_pred E-EECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCEEEEE
Q ss_conf 2-102899889999922999999999988981999978998852223597124742024456683799999449849999
Q 000736 386 F-SLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSV 464 (1323)
Q Consensus 386 ~-~l~~~~~V~~VaFspdg~~~~LAs~s~Dg~I~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~ 464 (1323)
. ...|...+.+++|+ + +.+++++.||+|++|+..+......+ . ......+...+..++|+|++.++|+
T Consensus 254 ~~~~~~~~~~~~~~~~--~--~~~~s~s~Dg~i~iwd~~tg~~i~~~-----~--~~~~~~~~~~v~~v~~s~~~~~la~ 322 (342)
T d2ovrb2 254 QGPNKHQSAVTCLQFN--K--NFVITSSDDGTVKLWDLKTGEFIRNL-----V--TLESGGSGGVVWRIRASNTKLVCAV 322 (342)
T ss_dssp CSTTSCSSCEEEEEEC--S--SEEEEEETTSEEEEEETTTCCEEEEE-----E--ECTTGGGTCEEEEEEECSSEEEEEE
T ss_pred CCCCEEEECEEECCCC--C--CEEEEECCCCEEEEEECCCCCEEEEE-----E--CCCCCCCCCCEEEEEECCCCCEEEE
T ss_conf 2100011010000137--9--84499908998999999999798998-----6--2347898897899998799989999
Q ss_pred EECCCCC--EEEEEEE
Q ss_conf 8269987--0289983
Q 000736 465 SHHGPRH--SNYFRGA 478 (1323)
Q Consensus 465 ~~~~~~~--~~~~~~~ 478 (1323)
++.+.+. .+.+|.+
T Consensus 323 g~~dGt~~~~l~~~Df 338 (342)
T d2ovrb2 323 GSRNGTEETKLLVLDF 338 (342)
T ss_dssp ECSSSSSCCEEEEEEC
T ss_pred EECCCCCEEEEEEEEC
T ss_conf 9689997048999938
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.93 E-value=4.4e-22 Score=170.33 Aligned_cols=246 Identities=10% Similarity=-0.072 Sum_probs=146.8
Q ss_pred EEECCCCEEEEEECCCCEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCC
Q ss_conf 66258989999937972899822443343331120222222223579999789999903999899996899599996899
Q 000736 27 ALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDG 106 (1323)
Q Consensus 27 ~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~i~~spd~~~La~as~dG~I~lw~~~~ 106 (1323)
..|.++-.+.+.++++.+..||. .+++. +.+++. +..+.+++|||||+.+++++.||.|.+|+..+
T Consensus 27 ~~~~~~~~~v~~~d~g~v~v~D~--~t~~v---~~~~~~---------g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t 92 (432)
T d1qksa2 27 DWDLENLFSVTLRDAGQIALIDG--STYEI---KTVLDT---------GYAVHISRLSASGRYLFVIGRDGKVNMIDLWM 92 (432)
T ss_dssp CCCGGGEEEEEETTTTEEEEEET--TTCCE---EEEEEC---------SSCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred CCCCCCEEEEEECCCCEEEEEEC--CCCCE---EEEEEC---------CCCEEEEEECCCCCEEEEECCCCCEEEEEEEC
T ss_conf 47878289999769997999989--99839---999737---------99713799889999999982899978998108
Q ss_pred CEE----E--EECEECCCEEEEEECCCCCEE-EEEECCCCEEEEE-ECCCEEEEEEECCCC-CCCEECCCCCCCCCCCEE
Q ss_conf 919----9--910035959999993789969-9996996499994-047210123203467-974001476246899857
Q 000736 107 NAT----E--VVGRVEGGVRFISPSPDGDLL-GVTTGFGQILVMT-HDWDLLYENPLEELA-EGFDVHEPELSSSFSFKS 177 (1323)
Q Consensus 107 ~~~----e--~vg~~~~~I~~~awSPDG~~L-A~~s~d~tI~l~t-~~~d~~~e~~l~~~~-~~~~Vs~tqf~~~d~~v~ 177 (1323)
... + ....+.+.+.+.+|||||++| +++..+++|.+|+ ...+++.....+... ....+ ..+....
T Consensus 93 ~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~------~~~~~~~ 166 (432)
T d1qksa2 93 KEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY------HPEPRVA 166 (432)
T ss_dssp SSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCE------ESCCCEE
T ss_pred CCCEEEEEEECCCCCCCEEEECCCCCCCCEEEEECCCCCEEEEEECCCCCCEEEECCCCCCCCCEEC------CCCCCEE
T ss_conf 9812889984488987769843218888889998178982799907655422540247764352201------6888505
Q ss_pred EEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEC-CCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEE
Q ss_conf 899906885799922554455889889999799993666415-6798545899936999699996289999999399991
Q 000736 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE 256 (1323)
Q Consensus 178 ~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e-~~~g~~~slawsPdG~lIAs~~~d~~~~~~~~V~l~e 256 (1323)
.|.+++||.++. ++. ..+..+.+|+..+++...+.. ++......++|+|+|+++++++.+. ..+.+++
T Consensus 167 ~v~~s~dg~~~~-vs~-----~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~-----~~v~v~d 235 (432)
T d1qksa2 167 AILASHYRPEFI-VNV-----KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANAR-----NKLVVID 235 (432)
T ss_dssp EEEECSSSSEEE-EEE-----TTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGG-----TEEEEEE
T ss_pred EEEECCCCCEEE-EEE-----CCCCEEEEEECCCCCCCEEEEECCCCCCCCCEECCCCCEEEEECCCC-----CEEEEEE
T ss_conf 899878999899-998-----16882999984378752279983367542653889887999951666-----3677761
Q ss_pred CCC-EEEEEEEECC--CCCCCEEEEEECCCCCEEEEEEC-CCCCCEEEEEEEEC
Q ss_conf 798-0587999406--88775899999459872589971-68877499999207
Q 000736 257 RNG-LERSSFDINE--QIDSTVELLKWNCMSDLLAAVVR-FEEYDSVKICFFSN 306 (1323)
Q Consensus 257 ~nG-l~~~ef~l~~--~~~~~V~~laWSpDg~~LA~~~~-d~~~~~VqlW~~~n 306 (1323)
... .....+.... .+........+...+...+.... ++ .|.+|....
T Consensus 236 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~---~v~~~~~~~ 286 (432)
T d1qksa2 236 TKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDD---SVALIGTDP 286 (432)
T ss_dssp TTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSS---EEEEEECCT
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCEECCCCCCEECCCCCCCC---EEEECCCCC
T ss_conf 445268887214862245676641014898831021356883---587624566
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=6.3e-22 Score=169.23 Aligned_cols=277 Identities=15% Similarity=0.113 Sum_probs=193.9
Q ss_pred CCCCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECEECCCEEEEEECCCCCEEEEEECCCCEEEEEEC
Q ss_conf 22235799997899999039998999968995999968999199910035959999993789969999699649999404
Q 000736 67 IEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD 146 (1323)
Q Consensus 67 ~~~~~~~~~~~V~~i~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tI~l~t~~ 146 (1323)
+.+| .+.|++++|+| |++++.||+|++|+..+. ...|.+.|.+++|+|++ .+++++.|+++++|
T Consensus 9 l~gH----~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~----~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w--- 72 (287)
T d1pgua2 9 ISGH----NKGITALTVNP----LISGSYDGRIMEWSSSSM----HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVN--- 72 (287)
T ss_dssp ECCC----SSCEEEEETTT----TEEEETTSCEEETTTTEE----ECCCCSCEEEEECCSTT-CCEEEETTTEEEET---
T ss_pred ECCC----CCCEEEEEECC----EEEEECCCEEEEEECCCC----CCCCCCCEEEEEECCCC-EEEEEEECCCCCCC---
T ss_conf 9887----98649999895----789848991999989998----88877878999965997-28988610122211---
Q ss_pred CCEEEEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEE
Q ss_conf 72101232034679740014762468998578999068857999225544558898899997999936664156798545
Q 000736 147 WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGA 226 (1323)
Q Consensus 147 ~d~~~e~~l~~~~~~~~Vs~tqf~~~d~~v~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~g~~~ 226 (1323)
+..... .. .....+++.+||.+++ ++. +..+.+|+..+++........ ..
T Consensus 73 -~~~~~~-~~-----------------~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~---~~ 122 (287)
T d1pgua2 73 -GITKHE-FG-----------------SQPKVASANNDGFTAV-LTN-------DDDLLILQSFTGDIIKSVRLN---SP 122 (287)
T ss_dssp -TEEEEE-CS-----------------SCEEEEEECSSSEEEE-EET-------TSEEEEEETTTCCEEEEEECS---SC
T ss_pred -CCCCCC-CC-----------------CCEEEEEECCCCCEEE-EEE-------CCCCEEEECCCEEEEEECCCC---CE
T ss_conf -111111-12-----------------2101466416785699-960-------332100001100354310122---20
Q ss_pred EEEECCCCCEEEEEECCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEEC
Q ss_conf 89993699969999628999999939999179805879994068877589999945987258997168877499999207
Q 000736 227 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1323)
Q Consensus 227 slawsPdG~lIAs~~~d~~~~~~~~V~l~e~nGl~~~ef~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~n 306 (1323)
..+++|+++.++.+..+. ..|.+|+..+.... +.+..++...+.+++|+|||+.||+++.|+ .|++|+..+
T Consensus 123 ~~~~~~~~~~~~v~~~~~-----~~v~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg---~i~i~d~~~ 193 (287)
T d1pgua2 123 GSAVSLSQNYVAVGLEEG-----NTIQVFKLSDLEVS-FDLKTPLRAKPSYISISPSETYIAAGDVMG---KILLYDLQS 193 (287)
T ss_dssp EEEEEECSSEEEEEETTT-----SCEEEEETTEEEEE-EECSSCCSSCEEEEEECTTSSEEEEEETTS---CEEEEETTT
T ss_pred EEEEECCCCCEEEECCCC-----CEEEEEECCCCCEE-EEEEECCCCCEEEEEECCCCCCCCCCCCCC---CCCCEEECC
T ss_conf 356521475111000221-----00021000122100-012102478536999516765211011111---100000023
Q ss_pred CEEEEEEEEEEECCCCEEEEECCCCCCEEEEEECCCCEEEEEEEEEEEECCCEEEEEEECCEEEEEECCCCCCCCCCEEE
Q ss_conf 75677769998259839999915999279999449949999999952108990699991997999425776799983012
Q 000736 307 NHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLF 386 (1323)
Q Consensus 307 ~~wyLkqel~~~~~~~~~v~W~p~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~i~lt~l~~~~vPpPm~~~ 386 (1323)
+... ...+.++......+.|+|.+.. ......+ +..++....+..+++|++... .. ...
T Consensus 194 ~~~~-~~~~~~h~~~v~~~~~~p~~~~-~~~~~~~---------------~~~l~sgs~D~~i~iw~~~~~---~~-~~~ 252 (287)
T d1pgua2 194 REVK-TSRWAFRTSKINAISWKPAEKG-ANEEEIE---------------EDLVATGSLDTNIFIYSVKRP---MK-IIK 252 (287)
T ss_dssp TEEE-ECCSCCCSSCEEEEEECCCC-------CCS---------------CCEEEEEETTSCEEEEESSCT---TC-CEE
T ss_pred CCCC-CCCCCCCCCCCCEEEECCCCCC-CCCCCCC---------------CCEEEEECCCCEEEEEECCCC---CE-EEE
T ss_conf 3211-0001111111100000136541-0012678---------------870276649995999888999---75-899
Q ss_pred EE-CCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEC
Q ss_conf 10-2899889999922999999999988981999978
Q 000736 387 SL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDL 422 (1323)
Q Consensus 387 ~l-~~~~~V~~VaFspdg~~~~LAs~s~Dg~I~lw~~ 422 (1323)
.+ .|...|++|+|+|++ .|++++.||+|++|+.
T Consensus 253 ~~~~h~~~V~~v~~~~~~---~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 253 ALNAHKDGVNNLLWETPS---TLVSSGADACIKRWNV 286 (287)
T ss_dssp ETTSSTTCEEEEEEEETT---EEEEEETTSCEEEEEE
T ss_pred EECCCCCCEEEEEECCCC---EEEEEECCCEEEEEEE
T ss_conf 927878985899998999---8999979992999997
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.91 E-value=1.6e-20 Score=159.30 Aligned_cols=343 Identities=9% Similarity=-0.025 Sum_probs=188.2
Q ss_pred EECCCC--EEEEEECCCCEEEEECCCCEE-EEECEECCCEEEEEECCCCCEEEEEECCCCEEEEEE-CCCEEEEEEECCC
Q ss_conf 903999--899996899599996899919-991003595999999378996999969964999940-4721012320346
Q 000736 83 YLMEKE--ALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEEL 158 (1323)
Q Consensus 83 ~spd~~--~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~d~tI~l~t~-~~d~~~e~~l~~~ 158 (1323)
+.+|.+ .+++++.||+|.+||..++++ ..+..+ ..+..++|||||++|++++.|++|.+|+. ..+......+...
T Consensus 26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~ 104 (426)
T d1hzua2 26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG 104 (426)
T ss_dssp SCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC
T ss_pred CCCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECC-CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECC
T ss_conf 167987089999759997999999999599999689-9803899989999999995899889997568860489998678
Q ss_pred CCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCC-----------CCCEEE
Q ss_conf 797400147624689985789990688579992255445588988999979999366641567-----------985458
Q 000736 159 AEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK-----------AFMGAV 227 (1323)
Q Consensus 159 ~~~~~Vs~tqf~~~d~~v~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~-----------~g~~~s 227 (1323)
. +|.+.+.+++|+|||++++ ++.. .++.+++||..++.+......+ .+....
T Consensus 105 ~-----------~~~~~~~s~~~spDG~~l~-v~~~-----~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (426)
T d1hzua2 105 I-----------EARSVESSKFKGYEDRYTI-AGAY-----WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAA 167 (426)
T ss_dssp S-----------EEEEEEECCSTTCTTTEEE-EEEE-----ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEE
T ss_pred C-----------CCCCEEEEEEECCCCCEEE-EEEC-----CCCEEEEECCCCCCEEEEEECCCCCCCCEEECCCCCEEE
T ss_conf 8-----------8764588500268898799-9635-----897699985776412578622677736436427885038
Q ss_pred EEECCCCCEEEEEECCCCCCCCCEEEEEECCCEE-EEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEEC
Q ss_conf 9993699969999628999999939999179805-879994068877589999945987258997168877499999207
Q 000736 228 LEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE-RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1323)
Q Consensus 228 lawsPdG~lIAs~~~d~~~~~~~~V~l~e~nGl~-~~ef~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~n 306 (1323)
++.+|++..+.....+. ..+.++...... ...-.+ +....+..++|+|+++++.++..+. +.+.+|+..+
T Consensus 168 i~~s~d~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~a~~~~--~~~~~~~~~~ 238 (426)
T d1hzua2 168 IIASHEHPEFIVNVKET-----GKVLLVNYKDIDNLTVTSI--GAAPFLADGGWDSSHRYFMTAANNS--NKVAVIDSKD 238 (426)
T ss_dssp EEECSSSSEEEEEETTT-----TEEEEEECSSSSSCEEEEE--ECCSSEEEEEECTTSCEEEEEETTC--SEEEEEETTT
T ss_pred EEECCCCCEEEEECCCC-----CEEEEEEECCCCCEEEEEE--CCCCCCEEEEECCCCCEEEEEEECC--CCEEEEECCC
T ss_conf 99878787888852789-----7699999246652045775--6677537613778886788642011--0000000255
Q ss_pred CEEEEEEEEEEECCCCEEEEECCCCCCEEEEEECCCCEEEEEEEEEEEECCCEEEEEEECCEEEEEECCCCCCCCCCEEE
Q ss_conf 75677769998259839999915999279999449949999999952108990699991997999425776799983012
Q 000736 307 NHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLF 386 (1323)
Q Consensus 307 ~~wyLkqel~~~~~~~~~v~W~p~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~i~lt~l~~~~vPpPm~~~ 386 (1323)
..- ...+..... .++... +..... +.. ..+.....+.+.+.+++.... .+.+-......
T Consensus 239 ~~~--~~~~~~~~~------~~~~~~--~~~~~~-~~~----~~~~~~~~~d~~v~~~~~~~~------~~~~~~~~~~~ 297 (426)
T d1hzua2 239 RRL--SALVDVGKT------PHPGRG--ANFVHP-KYG----PVWSTSHLGDGSISLIGTDPK------NHPQYAWKKVA 297 (426)
T ss_dssp TEE--EEEEECSSC------CCCSCC--EEEEET-TTE----EEEEEECTTTCEEEEEECCTT------TCTTTBTSEEE
T ss_pred CCE--EEEECCCCC------CCCCCE--EEEECC-CCC----CEEEECCCCCCEEEEEECCCC------CCCCCCCEEEE
T ss_conf 627--887505874------443420--110069-877----457741578965988522566------52033025868
Q ss_pred EE-CCCCCEEEEEEECCCCCCEEEE-------EECCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECC
Q ss_conf 10-2899889999922999999999-------988981999978998852223597124742024456683799999449
Q 000736 387 SL-KFPTAVTEMAFYSKSSKNCLAA-------ILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGS 458 (1323)
Q Consensus 387 ~l-~~~~~V~~VaFspdg~~~~LAs-------~s~Dg~I~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d 458 (1323)
++ .|...++.|+|+||+ +.|++ +..|++|++|+..+.....++....- ......+...+.++.|+||
T Consensus 298 ~l~g~~~~v~~v~~sPdg--~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~---~~~~~~~~~rv~~~~fSpD 372 (426)
T d1hzua2 298 ELQGQGGGSLFIKTHPKS--SHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAE---WADLGEGAKRVVQPEYNKR 372 (426)
T ss_dssp EEECSSSCCCCEECCTTC--SEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHH---HHCCCSSCCCEEEEEECSS
T ss_pred EEECCCCCEEEEECCCCC--CEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCH---HCCCCCCCCCEEEEEECCC
T ss_conf 986688763678748998--61888506798802288799998987876708950211---0256778851898799999
Q ss_pred CEEEEEEE-C--CCCCEEEEEEE
Q ss_conf 84999982-6--99870289983
Q 000736 459 HLLLSVSH-H--GPRHSNYFRGA 478 (1323)
Q Consensus 459 ~~lla~~~-~--~~~~~~~~~~~ 478 (1323)
|+.+.++. . +..+.+.+|..
T Consensus 373 Gk~i~vs~~~~~~~~~~i~v~D~ 395 (426)
T d1hzua2 373 GDEVWFSVWNGKNDSSALVVVDD 395 (426)
T ss_dssp SSEEEEEECCCTTSCCEEEEEET
T ss_pred CCEEEEEEECCCCCCCEEEEEEC
T ss_conf 99999997248888982999999
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=3.2e-20 Score=157.07 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=19.1
Q ss_pred CCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCC
Q ss_conf 899889999922999999999988981999978998852
Q 000736 390 FPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDML 428 (1323)
Q Consensus 390 ~~~~V~~VaFspdg~~~~LAs~s~Dg~I~lw~~~~~~~~ 428 (1323)
|.+.|++++|+||+ +.|++++.|++|++|+..+..+.
T Consensus 288 H~~~V~~l~fspd~--~~l~S~s~D~~v~vWd~~~g~~~ 324 (393)
T d1sq9a_ 288 HSSWVMSLSFNDSG--ETLCSAGWDGKLRFWDVKTKERI 324 (393)
T ss_dssp BSSCEEEEEECSSS--SEEEEEETTSEEEEEETTTTEEE
T ss_pred CCCCEEEECCCCCC--CEEEEECCCCEEEEEECCCCCEE
T ss_conf 35866600138988--80698779998999999999799
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=7.4e-21 Score=161.62 Aligned_cols=290 Identities=11% Similarity=0.062 Sum_probs=150.9
Q ss_pred CCCEEEEEEECCCCEEEEEECCCCEEEEECCCC--EEE--EECEECCCEEEEEECCCC-CEEEEEECCCCEEEEEECCCE
Q ss_conf 997899999039998999968995999968999--199--910035959999993789-969999699649999404721
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGN--ATE--VVGRVEGGVRFISPSPDG-DLLGVTTGFGQILVMTHDWDL 149 (1323)
Q Consensus 75 ~~~V~~i~~spd~~~La~as~dG~I~lw~~~~~--~~e--~vg~~~~~I~~~awSPDG-~~LA~~s~d~tI~l~t~~~d~ 149 (1323)
.+.|++|+|+|+++.|++++.||+|++|+.++. ..+ ....|.+.|.+++|+|++ .+|++++.|++|.+|+.....
T Consensus 11 ~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~ 90 (342)
T d1yfqa_ 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP 90 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS
T ss_pred CCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEECCCCCCEEEEECCCCC
T ss_conf 89788899958999999997999299997569986368988558999889999958999789981265311454204432
Q ss_pred EEEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEE----ECC--CCC
Q ss_conf 01232034679740014762468998578999068857999225544558898899997999936664----156--798
Q 000736 150 LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS----SEL--KAF 223 (1323)
Q Consensus 150 ~~e~~l~~~~~~~~Vs~tqf~~~d~~v~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t----~e~--~~g 223 (1323)
....... .+........+.+++.+++ .++ .++.+++|+...+..... ... ...
T Consensus 91 ~~~~~~~--------------~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~ 149 (342)
T d1yfqa_ 91 SFQALTN--------------NEANLGICRICKYGDDKLI-AAS------WDGLIEVIDPRNYGDGVIAVKNLNSNNTKV 149 (342)
T ss_dssp SEEECBS--------------CCCCSCEEEEEEETTTEEE-EEE------TTSEEEEECHHHHTTBCEEEEESCSSSSSS
T ss_pred CCCCCCC--------------CCCCCCCCCCCCCCCCCCC-CCC------CCCCCCEEECCCCCCCEEEECCCCCCCCCC
T ss_conf 0000011--------------1111111111111111111-101------222111020234443302300024300120
Q ss_pred CEEEEEECCCCCEEEEEECCCCCCCCCEEEEEECCCEE-EEEEEECCCCCCCEEEEEE-CCCCCEEEEEECCCCCCEEEE
Q ss_conf 54589993699969999628999999939999179805-8799940688775899999-459872589971688774999
Q 000736 224 MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE-RSSFDINEQIDSTVELLKW-NCMSDLLAAVVRFEEYDSVKI 301 (1323)
Q Consensus 224 ~~~slawsPdG~lIAs~~~d~~~~~~~~V~l~e~nGl~-~~ef~l~~~~~~~V~~laW-SpDg~~LA~~~~d~~~~~Vql 301 (1323)
......+.+.++.+++++.+ ..|.+|+..... ...+.........+....+ +.++..+++++.|+ .+.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~d------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg---~~~v 220 (342)
T d1yfqa_ 150 KNKIFTMDTNSSRLIVGMNN------SQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG---RVAV 220 (342)
T ss_dssp CCCEEEEEECSSEEEEEEST------TEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS---EEEE
T ss_pred EEEEEEEECCCCCEEEECCC------CCEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCCEEEEECCCC---EEEE
T ss_conf 00001000168702465179------84788760567634111210254221014676369998788654899---5999
Q ss_pred EEEECCEEEEEEEEEEECCCCEEEEECCCCCCEEEEEECCCCEEEEEEEEEEEECCCEEEEEEECCEEEEEECCCCCCCC
Q ss_conf 99207756777699982598399999159992799994499499999999521089906999919979994257767999
Q 000736 302 CFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPP 381 (1323)
Q Consensus 302 W~~~n~~wyLkqel~~~~~~~~~v~W~p~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~i~lt~l~~~~vPp 381 (1323)
|...+... . +...... .....+.
T Consensus 221 ~~~~~~~~-----------~-----~~~~~~~------------------------------------~~~~~~~----- 243 (342)
T d1yfqa_ 221 EFFDDQGD-----------D-----YNSSKRF------------------------------------AFRCHRL----- 243 (342)
T ss_dssp EECCTTCC-----------S-----TTCTTCE------------------------------------EEECCCC-----
T ss_pred EEECCCCC-----------E-----EECCCCC------------------------------------EEEEEEE-----
T ss_conf 98059864-----------0-----1112351------------------------------------2565553-----
Q ss_pred CCEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCEE
Q ss_conf 83012102899889999922999999999988981999978998852223597124742024456683799999449849
Q 000736 382 PMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLL 461 (1323)
Q Consensus 382 Pm~~~~l~~~~~V~~VaFspdg~~~~LAs~s~Dg~I~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~l 461 (1323)
......+...|++++|+|++ +.||+++.||+|++|+..+......+. ..+....++|++++.+
T Consensus 244 --~~~~~~~~~~v~~l~~sp~~--~~lasg~~Dg~v~vWD~~~~~~l~~~~-------------~~~~~~~~~~s~~~~~ 306 (342)
T d1yfqa_ 244 --NLKDTNLAYPVNSIEFSPRH--KFLYTAGSDGIISCWNLQTRKKIKNFA-------------KFNEDSVVKIACSDNI 306 (342)
T ss_dssp --CTTCCSSCCCEEEEEECTTT--CCEEEEETTSCEEEEETTTTEEEEECC-------------CCSSSEEEEEEECSSE
T ss_pred --CCCCCCCCCCCEEEEECCCC--CEEEEECCCCEEEEEECCCCCEEEEEC-------------CCCCCEEEEEEECCCE
T ss_conf --14777623543159966984--479998799989999999894988705-------------8999879999947999
Q ss_pred EEEEECC
Q ss_conf 9998269
Q 000736 462 LSVSHHG 468 (1323)
Q Consensus 462 la~~~~~ 468 (1323)
+++++.+
T Consensus 307 l~~a~sd 313 (342)
T d1yfqa_ 307 LCLATSD 313 (342)
T ss_dssp EEEEEEC
T ss_pred EEEEECC
T ss_conf 9999919
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.90 E-value=3.8e-20 Score=156.52 Aligned_cols=329 Identities=9% Similarity=-0.015 Sum_probs=201.9
Q ss_pred CEEEEEEEC-CCCEEEEEECCCCEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCC--C
Q ss_conf 215796625-8989999937972899822443343331120222222223579999789999903999899996899--5
Q 000736 22 ILQFSALDI-EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSG--L 98 (1323)
Q Consensus 22 ~~~~~~~d~-~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~i~~spd~~~La~as~dG--~ 98 (1323)
.....-|.+ |++.+.+++.. .|+.|+. ..+.. .+ + .| .+.|.++.|+|||+.|++++.++ .
T Consensus 4 ~~~~~~fSP~dG~~~a~~~~g-~v~v~d~--~~~~~----~~----~-~~----~~~v~~~~~spDg~~l~~~~~~~g~~ 67 (360)
T d1k32a3 4 SKFAEDFSPLDGDLIAFVSRG-QAFIQDV--SGTYV----LK----V-PE----PLRIRYVRRGGDTKVAFIHGTREGDF 67 (360)
T ss_dssp GGGEEEEEECGGGCEEEEETT-EEEEECT--TSSBE----EE----C-SC----CSCEEEEEECSSSEEEEEEEETTEEE
T ss_pred HHHCCCCCCCCCCEEEEEECC-EEEEEEC--CCCCE----EE----C-CC----CCCEEEEEECCCCCEEEEEECCCCCE
T ss_conf 010051468899999999899-6999989--99948----99----1-69----99888899989999999999289989
Q ss_pred EEEEECCCCEEEEECEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCEEEEEEECCCCCCCEECCCCCCCCCCCEEE
Q ss_conf 99996899919991003595999999378996999969964999940472101232034679740014762468998578
Q 000736 99 LLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1323)
Q Consensus 99 I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tI~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~d~~v~~ 178 (1323)
|.+|+..+++...+..|.+.|.+++|||||+.|++++.++.+.+|......... .+. .+...+.+
T Consensus 68 v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~-~~~--------------~~~~~~~~ 132 (360)
T d1k32a3 68 LGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV-IER--------------SREAMITD 132 (360)
T ss_dssp EEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-EEE--------------CSSSCCCC
T ss_pred EEEEECCCCCEEEEECCCCEEEEEEECCCCCCCCEECCCCCCCCCCCCCCCEEE-EEE--------------CCCCCCCC
T ss_conf 999989999488750897127741211454321000111110000012221000-000--------------13552023
Q ss_pred EEEECCCCEEEEEECCCCC----CCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEE
Q ss_conf 9990688579992255445----588988999979999366641567985458999369996999962899999993999
Q 000736 179 ISWRGDGKYFATLSEFCNS----SKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1323)
Q Consensus 179 IsWs~DG~~lAtvss~d~~----~~~d~~irVWd~~~G~l~~t~e~~~g~~~slawsPdG~lIAs~~~d~~~~~~~~V~l 254 (1323)
++|+|||++|| .+..+.. +..++.+++|+..+++...... +.+....++|+|+|+.||+++.+. .+..
T Consensus 133 ~~~spdg~~la-~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~s~~~------~~~~ 204 (360)
T d1k32a3 133 FTISDNSRFIA-YGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT-ENSHDYAPAFDADSKNLYYLSYRS------LDPS 204 (360)
T ss_dssp EEECTTSCEEE-EEEEECSSTTCSCCEEEEEEEETTTTEEEECSC-SSSBEEEEEECTTSCEEEEEESCC------CCCE
T ss_pred HHHCCCEEEEE-EECCCCCCCEEECCCCCEEEECCCCCCEEEECC-CCCCCCCCCCCCCCCEEEEEECCC------CEEC
T ss_conf 01213225665-212331211000256542663045571353035-432211001257799999995998------5575
Q ss_pred EECCCEEE------EEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEE--CCEEEEEEEEEEECCCCEEEE
Q ss_conf 91798058------7999406887758999994598725899716887749999920--775677769998259839999
Q 000736 255 YERNGLER------SSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS--NNHWYLKYEIRYLRRDGIRFM 326 (1323)
Q Consensus 255 ~e~nGl~~------~ef~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~--n~~wyLkqel~~~~~~~~~v~ 326 (1323)
|+...... ..+.+..+ ...+..+.|++++..++.+..+..+...++|... ... ...+.........+.
T Consensus 205 ~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 280 (360)
T d1k32a3 205 PDRVVLNFSFEVVSKPFVIPLI-PGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGD---YRMIIPLESSILIYS 280 (360)
T ss_dssp ECSSSSCEECCSCBEEEEEESS-TTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBC---EEEEEECSSEEEEEE
T ss_pred CCCCCCCEEECCCCCEEEEECC-CCCCCCCEECCCCCCCCCCCEEECCCCCCEEECCCCCCC---EEEEEECCCCCEEEE
T ss_conf 3335440232036411798524-696012068777671553113652665400101247675---267541389856999
Q ss_pred ECCCCCCEEEEEECCCCEEEEEEEEEEEECCCEEEEEEECCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEECCCCCC
Q ss_conf 91599927999944994999999995210899069999199799942577679998301210289988999992299999
Q 000736 327 WHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKN 406 (1323)
Q Consensus 327 W~p~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~i~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFspdg~~~ 406 (1323)
|.+.++... ..+...+...+.+|++.... ...+.+.|.+++||||| +
T Consensus 281 ~~~~~~~~~-----------------------~~~~~~~~~~i~~~d~~~~~--------~~~~~~~v~~~~~SpDG--~ 327 (360)
T d1k32a3 281 VPVHGEFAA-----------------------YYQGAPEKGVLLKYDVKTRK--------VTEVKNNLTDLRLSADR--K 327 (360)
T ss_dssp CCCCCSHHH-----------------------HHHCCCCCEEEEEEETTTCC--------EEEEEEEEEEEEECTTS--C
T ss_pred EEECCCCEE-----------------------EEEECCCCCEEEEEECCCCE--------EEEECCCCCEEEECCCC--C
T ss_conf 973599706-----------------------99964899879999799974--------98864886879999989--8
Q ss_pred EEEEEECCCCEEEEECCCCC
Q ss_conf 99999889819999789988
Q 000736 407 CLAAILSDGCLCVVDLPAPD 426 (1323)
Q Consensus 407 ~LAs~s~Dg~I~lw~~~~~~ 426 (1323)
.|++++.||+|++|+...+.
T Consensus 328 ~l~~~~~Dg~i~v~d~~~~~ 347 (360)
T d1k32a3 328 TVMVRKDDGKIYTFPLEKPE 347 (360)
T ss_dssp EEEEEETTSCEEEEESSCTT
T ss_pred EEEEEECCCEEEEEECCCCC
T ss_conf 99999789949999999998
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=2.4e-19 Score=150.84 Aligned_cols=288 Identities=13% Similarity=0.007 Sum_probs=177.8
Q ss_pred CEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCEEECCCCCCCCCCCCCC-CCEEEEEEEC----CCCEEEEEECC
Q ss_conf 215796625898999993797289982244334333112022222222357999-9789999903----99989999689
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPG-DSITAFDYLM----EKEALIVGTSS 96 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~V~~i~~sp----d~~~La~as~d 96 (1323)
.+.++++. ++.++++|.|+.|..|+. .+.+....... .+.......+ ..+......+ ++..+++++.|
T Consensus 16 ~I~~v~~~--~~~l~S~S~D~~iriWd~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d 88 (393)
T d1sq9a_ 16 DIFSVSAC--NSFTVSCSGDGYLKVWDN--KLLDNENPKDK---SYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFS 88 (393)
T ss_dssp CEEEEEEC--SSEEEEEETTSEEEEEES--BCCTTCCGGGG---EEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred CCEEEEEE--CCEEEEEECCCEEEEEEC--CCCCCCCCCCE---EEEEEECCCCCEEEEEEEEECCCCCCCCEEEEEECC
T ss_conf 12799996--999999979996998789--87887765404---676542047716766675001579987689999489
Q ss_pred CCEEEEECCC----CEE--EEE-----CEECCCEEEEEECCCC-----CEEEEEECCCCEEEEEECCCEEEEEEECCCCC
Q ss_conf 9599996899----919--991-----0035959999993789-----96999969964999940472101232034679
Q 000736 97 GLLLLHSVDG----NAT--EVV-----GRVEGGVRFISPSPDG-----DLLGVTTGFGQILVMTHDWDLLYENPLEELAE 160 (1323)
Q Consensus 97 G~I~lw~~~~----~~~--e~v-----g~~~~~I~~~awSPDG-----~~LA~~s~d~tI~l~t~~~d~~~e~~l~~~~~ 160 (1323)
|.|.+|+... ... +.. ..+...+++++|++++ ..+++++.|+++.+|+.............. .
T Consensus 89 g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~-~ 167 (393)
T d1sq9a_ 89 GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN-W 167 (393)
T ss_dssp SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC-C
T ss_pred CCEEEEECCCCCCEEEEECCCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCEEEEE-E
T ss_conf 919999822898205651245632431157896689998447886542179998389819998740477534102331-0
Q ss_pred CCEE--C--CCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEC------CCCCCEEEEEE
Q ss_conf 7400--1--476246899857899906885799922554455889889999799993666415------67985458999
Q 000736 161 GFDV--H--EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE------LKAFMGAVLEW 230 (1323)
Q Consensus 161 ~~~V--s--~tqf~~~d~~v~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e------~~~g~~~slaw 230 (1323)
.... . ......+...+.+++|+||| +|| +++ .|++|||||..+|+...+.+ +|...+.+|+|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~la-sgs------~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 239 (393)
T d1sq9a_ 168 SPTLELQGTVESPMTPSQFATSVDISERG-LIA-TGF------NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 239 (393)
T ss_dssp CCEEEEEEEECCSSSSCCCCCEEEECTTS-EEE-EEC------TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred CCCEECCCCEECCCCCCCCEEEEEECCCC-EEE-EEE------CCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCC
T ss_conf 32000145100025789867899978999-899-993------8982999860233211000011111242563877004
Q ss_pred CCCCCEEEEEECCCCCCCCCEEEEEECC-CEEEEEEEEC----------CCCCCCEEEEEECCCCCEEEEEECCCCCCEE
Q ss_conf 3699969999628999999939999179-8058799940----------6887758999994598725899716887749
Q 000736 231 MPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDIN----------EQIDSTVELLKWNCMSDLLAAVVRFEEYDSV 299 (1323)
Q Consensus 231 sPdG~lIAs~~~d~~~~~~~~V~l~e~n-Gl~~~ef~l~----------~~~~~~V~~laWSpDg~~LA~~~~d~~~~~V 299 (1323)
+|+|++||+++.|.+ ...|.+|+.+ |.....+... ..|...|.+|+|||||++||+++.|+ +|
T Consensus 240 spdg~~l~sgs~D~t---~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~---~v 313 (393)
T d1sq9a_ 240 SPQGSLLAIAHDSNS---FGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG---KL 313 (393)
T ss_dssp CSSTTEEEEEEEETT---EEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS---EE
T ss_pred CCCCCEEEEECCCCC---CCEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCCC---EE
T ss_conf 665320112428988---421001035321344431156666431023202358666001389888069877999---89
Q ss_pred EEEEEECCEEEEEEEEEEECCCC----EEEEECCCCCC
Q ss_conf 99992077567776999825983----99999159992
Q 000736 300 KICFFSNNHWYLKYEIRYLRRDG----IRFMWHPTKPL 333 (1323)
Q Consensus 300 qlW~~~n~~wyLkqel~~~~~~~----~~v~W~p~~~~ 333 (1323)
++|++.+... .+++..|.... ..+.|+|++..
T Consensus 314 ~vWd~~~g~~--~~~l~gH~~~v~~~~~~~~~~~~~~~ 349 (393)
T d1sq9a_ 314 RFWDVKTKER--ITTLNMHCDDIEIEEDILAVDEHGDS 349 (393)
T ss_dssp EEEETTTTEE--EEEEECCGGGCSSGGGCCCBCTTSCB
T ss_pred EEEECCCCCE--EEEECCCCCCCCCCCCEEEECCCCCE
T ss_conf 9999999979--99998868761377348999999999
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=3.1e-18 Score=142.82 Aligned_cols=309 Identities=12% Similarity=0.034 Sum_probs=196.3
Q ss_pred EEECCCCEEEEEECCCCEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCC
Q ss_conf 66258989999937972899822443343331120222222223579999789999903999899996899599996899
Q 000736 27 ALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDG 106 (1323)
Q Consensus 27 ~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~i~~spd~~~La~as~dG~I~lw~~~~ 106 (1323)
+++.+++.|++++.|+.|..||+ .+++. +.+ +.+| .+.|.+++|+|+ .|++++.||.+++|+...
T Consensus 22 ~~~~~g~~l~sgs~Dg~i~vWd~--~~~~~---~~~----~~~h----~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~ 86 (342)
T d2ovrb2 22 CLQFCGNRIVSGSDDNTLKVWSA--VTGKC---LRT----LVGH----TGGVWSSQMRDN--IIISGSTDRTLKVWNAET 86 (342)
T ss_dssp EEEEETTEEEEEETTSCEEEEET--TTCCE---EEE----CCCC----SSCEEEEEEETT--EEEEEETTSCEEEEETTT
T ss_pred EEEECCCEEEEEECCCEEEEEEC--CCCCE---EEE----EECC----CCCEEEEEECCC--CCCCCEECCCCCCCCCCC
T ss_conf 99978999999918990999989--99979---999----9488----999899994798--632100000111111110
Q ss_pred CEEE-EECEECCCEEEEEECCCCCEEEEEECCCCEEEEEEC-CCEEEEEEECCCCCCCEECCCCCCCCCCCEEEEEEECC
Q ss_conf 9199-910035959999993789969999699649999404-72101232034679740014762468998578999068
Q 000736 107 NATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD 184 (1323)
Q Consensus 107 ~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~d~tI~l~t~~-~d~~~e~~l~~~~~~~~Vs~tqf~~~d~~v~~IsWs~D 184 (1323)
.... ........+....+ .+..+..+..|+++.+|+.. .......... ......+.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~ 146 (342)
T d2ovrb2 87 GECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGH------------------VAAVRCVQYD 146 (342)
T ss_dssp TEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEESSSCCEEEEEECC------------------SSCEEEEEEC
T ss_pred CCCEECCCCCCEEEEEEEC--CCCCCCCCCCCEEEEEEECCCCCCEEEEECC------------------CCCCEEECCC
T ss_conf 0000001233304765202--4652212344403787403556300111001------------------1110000013
Q ss_pred CCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEECCCEEEEE
Q ss_conf 85799922554455889889999799993666415679854589993699969999628999999939999179805879
Q 000736 185 GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSS 264 (1323)
Q Consensus 185 G~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~g~~~slawsPdG~lIAs~~~d~~~~~~~~V~l~e~nGl~~~e 264 (1323)
+..++ +++ .++.+++|+...+....+...+... ...++++|..+++++.|+ .|.+|+......-
T Consensus 147 ~~~~~-~~~------~d~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~l~s~~~dg------~i~~~d~~~~~~~- 210 (342)
T d2ovrb2 147 GRRVV-SGA------YDFMVKVWDPETETCLHTLQGHTNR--VYSLQFDGIHVVSGSLDT------SIRVWDVETGNCI- 210 (342)
T ss_dssp SSCEE-EEE------TTSCEEEEEGGGTEEEEEECCCSSC--EEEEEECSSEEEEEETTS------CEEEEETTTCCEE-
T ss_pred CCEEE-EEC------CCCEEEEEECCCCEEEEEECCCCCC--CCCCCCCCCEEEEEECCC------EEEEEECCCCEEE-
T ss_conf 33024-335------8986999525234366787275444--210068999999995899------3999525565365-
Q ss_pred EEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEEEEEEEEECC--CC-EEEEECCCCCCEEEEEECC
Q ss_conf 99406887758999994598725899716887749999920775677769998259--83-9999915999279999449
Q 000736 265 FDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRR--DG-IRFMWHPTKPLQLICWTLD 341 (1323)
Q Consensus 265 f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~n~~wyLkqel~~~~~--~~-~~v~W~p~~~~~L~~~~~~ 341 (1323)
..+.. +...+..++|++ ++|++++.|+ .|++|+..+... .+.+..+.. .. ..+.|++ . .+..+..+
T Consensus 211 ~~~~~-~~~~v~~~~~~~--~~l~s~s~d~---~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~-~~~s~s~D 279 (342)
T d2ovrb2 211 HTLTG-HQSLTSGMELKD--NILVSGNADS---TVKIWDIKTGQC--LQTLQGPNKHQSAVTCLQFNK--N-FVITSSDD 279 (342)
T ss_dssp EEECC-CCSCEEEEEEET--TEEEEEETTS---CEEEEETTTCCE--EEEECSTTSCSSCEEEEEECS--S-EEEEEETT
T ss_pred EEECC-CCCCEEEEECCC--CEEEEECCCC---EEEEEECCCCCC--CCCCCCCCEEEECEEECCCCC--C-EEEEECCC
T ss_conf 67416-653205770689--9999974898---899986554422--111221000110100001379--8-44999089
Q ss_pred CCEEEEEEEEEEEECCCEEEEEEECCEEEEEECCCCCCCCCCEE-EEECCCCCEEEEEEECCCCCCEEEEEECCCC----
Q ss_conf 94999999995210899069999199799942577679998301-2102899889999922999999999988981----
Q 000736 342 GQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYL-FSLKFPTAVTEMAFYSKSSKNCLAAILSDGC---- 416 (1323)
Q Consensus 342 g~~~~~~~~~~~~~~d~~~v~viDg~~i~lt~l~~~~vPpPm~~-~~l~~~~~V~~VaFspdg~~~~LAs~s~Dg~---- 416 (1323)
|.+ ++|+++....-..+.. ..-.|.+.|++++|+|++ ..+|+++.||+
T Consensus 280 g~i-------------------------~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~--~~la~g~~dGt~~~~ 332 (342)
T d2ovrb2 280 GTV-------------------------KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTK--LVCAVGSRNGTEETK 332 (342)
T ss_dssp SEE-------------------------EEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSE--EEEEEECSSSSSCCE
T ss_pred CEE-------------------------EEEECCCCCEEEEEECCCCCCCCCCEEEEEECCCC--CEEEEEECCCCCEEE
T ss_conf 989-------------------------99999999798998623478988978999987999--899999689997048
Q ss_pred EEEEECCC
Q ss_conf 99997899
Q 000736 417 LCVVDLPA 424 (1323)
Q Consensus 417 I~lw~~~~ 424 (1323)
|.+|+++.
T Consensus 333 l~~~Df~~ 340 (342)
T d2ovrb2 333 LLVLDFDV 340 (342)
T ss_dssp EEEEECCC
T ss_pred EEEEECCC
T ss_conf 99993899
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.90 E-value=5.2e-19 Score=148.42 Aligned_cols=352 Identities=10% Similarity=-0.020 Sum_probs=198.4
Q ss_pred EEECCC-CEE-EEEECCCCEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEEC
Q ss_conf 662589-899-999379728998224433433311202222222235799997899999039998999968995999968
Q 000736 27 ALDIEQ-NRL-FFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSV 104 (1323)
Q Consensus 27 ~~d~~~-~~l-~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~i~~spd~~~La~as~dG~I~lw~~ 104 (1323)
.++.|. +.+ .+.++++.|..||. .+++. +.+++. +..+.+++|+|||+.|++++.||+|.+|+.
T Consensus 25 ~~~~d~~~~~~V~~~~dg~v~vwD~--~t~~~---~~~l~~---------g~~~~~vafSPDGk~l~~~~~d~~v~vwd~ 90 (426)
T d1hzua2 25 LNDLDLPNLFSVTLRDAGQIALVDG--DSKKI---VKVIDT---------GYAVHISRMSASGRYLLVIGRDARIDMIDL 90 (426)
T ss_dssp CSCCCGGGEEEEEETTTTEEEEEET--TTCSE---EEEEEC---------CSSEEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred CCCCCCCEEEEEEECCCCEEEEEEC--CCCCE---EEEEEC---------CCCEEEEEECCCCCEEEEEECCCCEEEEEC
T ss_conf 2167987089999759997999999--99959---999968---------998038999899999999958998899975
Q ss_pred CCCEEE---E---ECEECCCEEEEEECCCCCEEEEEE-CCCCEEEEE-ECCCEEEEEEECCCCCCCEECCCCCCCCCCCE
Q ss_conf 999199---9---100359599999937899699996-996499994-04721012320346797400147624689985
Q 000736 105 DGNATE---V---VGRVEGGVRFISPSPDGDLLGVTT-GFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1323)
Q Consensus 105 ~~~~~e---~---vg~~~~~I~~~awSPDG~~LA~~s-~d~tI~l~t-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~d~~v 176 (1323)
++++.. . ...|.+.+.+++|||||+.|++++ .++++.+|+ ..+.+......+... +....| .++...
T Consensus 91 ~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~ 165 (426)
T d1hzua2 91 WAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT----VDTQTY-HPEPRV 165 (426)
T ss_dssp TSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEEC----SSSCCE-ESCCCE
T ss_pred CCCCEEEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCC----CCCEEE-CCCCCE
T ss_conf 688604899986788876458850026889879996358976999857764125786226777----364364-278850
Q ss_pred EEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEE-EECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEE
Q ss_conf 7899906885799922554455889889999799993666-415679854589993699969999628999999939999
Q 000736 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA-SSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1323)
Q Consensus 177 ~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~-t~e~~~g~~~slawsPdG~lIAs~~~d~~~~~~~~V~l~ 255 (1323)
..+..++|+.++. ++. .+.+.+.+++..++.... +.-++......++|+|+|+++.++..+. ..+.++
T Consensus 166 ~~i~~s~d~~~~~-~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~-----~~~~~~ 234 (426)
T d1hzua2 166 AAIIASHEHPEFI-VNV-----KETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNS-----NKVAVI 234 (426)
T ss_dssp EEEEECSSSSEEE-EEE-----TTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTC-----SEEEEE
T ss_pred EEEEECCCCCEEE-EEC-----CCCCEEEEEEECCCCCEEEEEECCCCCCEEEEECCCCCEEEEEEECC-----CCEEEE
T ss_conf 3899878787888-852-----78976999992466520457756677537613778886788642011-----000000
Q ss_pred E-CCCEEEEEEEECCCCCCCEEEEEECCCCC--EEEEE-ECCCCCCEEEEEEEEC-----CEEEEEEEEEEECCCCEEEE
Q ss_conf 1-79805879994068877589999945987--25899-7168877499999207-----75677769998259839999
Q 000736 256 E-RNGLERSSFDINEQIDSTVELLKWNCMSD--LLAAV-VRFEEYDSVKICFFSN-----NHWYLKYEIRYLRRDGIRFM 326 (1323)
Q Consensus 256 e-~nGl~~~ef~l~~~~~~~V~~laWSpDg~--~LA~~-~~d~~~~~VqlW~~~n-----~~wyLkqel~~~~~~~~~v~ 326 (1323)
+ .++.....+..... ......+.|.+++. +.+.. ..++ .+.+|.... +.|-+...+..+......+.
T Consensus 235 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~---~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~ 310 (426)
T d1hzua2 235 DSKDRRLSALVDVGKT-PHPGRGANFVHPKYGPVWSTSHLGDG---SISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIK 310 (426)
T ss_dssp ETTTTEEEEEEECSSC-CCCSCCEEEEETTTEEEEEEECTTTC---EEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEE
T ss_pred ECCCCCEEEEECCCCC-CCCCCEEEEECCCCCCEEEECCCCCC---EEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEE
T ss_conf 0255627887505874-44342011006987745774157896---5988522566520330258689866887636787
Q ss_pred ECCCCCCEEEEEECCCCEEEEEEEEEEEECCCEEEEEEECCEEEEEECCCCCCCC---CCEE-EEE-CCCCCEEEEEEEC
Q ss_conf 9159992799994499499999999521089906999919979994257767999---8301-210-2899889999922
Q 000736 327 WHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPP---PMYL-FSL-KFPTAVTEMAFYS 401 (1323)
Q Consensus 327 W~p~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~i~lt~l~~~~vPp---Pm~~-~~l-~~~~~V~~VaFsp 401 (1323)
|+|++.+ |.+... +...+ .+++++.+|++....... |... ..+ .+...|.+++|||
T Consensus 311 ~sPdg~~-l~v~~~--------------~~~s~----~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSp 371 (426)
T d1hzua2 311 THPKSSH-LYVDTT--------------FNPDA----RISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK 371 (426)
T ss_dssp CCTTCSE-EEECCT--------------TCSSH----HHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECS
T ss_pred CCCCCCE-EEEEEC--------------CCCCC----CCCCEEEEEECCCCCCCEEEECCCHHCCCCCCCCCEEEEEECC
T ss_conf 4899861-888506--------------79880----2288799998987876708950211025677885189879999
Q ss_pred CCCCCEEE-EE----ECCCCEEEEECCCCCCCCCCCC
Q ss_conf 99999999-99----8898199997899885222359
Q 000736 402 KSSKNCLA-AI----LSDGCLCVVDLPAPDMLEDLEG 433 (1323)
Q Consensus 402 dg~~~~LA-s~----s~Dg~I~lw~~~~~~~~~~~~g 433 (1323)
|| +.+. +. +.+|+|.+|+..+...+..+.|
T Consensus 372 DG--k~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~ 406 (426)
T d1hzua2 372 RG--DEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD 406 (426)
T ss_dssp SS--SEEEEEECCCTTSCCEEEEEETTTTEEEEEECC
T ss_pred CC--CEEEEEEECCCCCCCEEEEEECCCCEEEEEECC
T ss_conf 99--999999724888898299999998738999878
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.89 E-value=1.8e-20 Score=158.84 Aligned_cols=351 Identities=7% Similarity=-0.064 Sum_probs=205.6
Q ss_pred ECCCCEEEEEECCCCEEEEECCCCEE-EEECEECCCEEEEEECCCCCEEEEEECCCCEEEEEE-CCCEEEEEEECCCCCC
Q ss_conf 03999899996899599996899919-991003595999999378996999969964999940-4721012320346797
Q 000736 84 LMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEG 161 (1323)
Q Consensus 84 spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~d~tI~l~t~-~~d~~~e~~l~~~~~~ 161 (1323)
.++.-.+++.+.+|+|.+||..++++ ..+..+ ..+..++|||||++|++++.|++|.+|+. ..+......+....
T Consensus 29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~-- 105 (432)
T d1qksa2 29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-- 105 (432)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS--
T ss_pred CCCCEEEEEECCCCEEEEEECCCCCEEEEEECC-CCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCC--
T ss_conf 878289999769997999989998399997379-97137998899999999828999789981089812889984488--
Q ss_pred CEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECC-----------CCCCEEEEEE
Q ss_conf 40014762468998578999068857999225544558898899997999936664156-----------7985458999
Q 000736 162 FDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL-----------KAFMGAVLEW 230 (1323)
Q Consensus 162 ~~Vs~tqf~~~d~~v~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~-----------~~g~~~slaw 230 (1323)
.+.+.+.+..|+|||++++++++ .++.++|||..++++..+... ..+....+.+
T Consensus 106 ---------~~~~~~~s~~~SpDG~~l~vs~~------~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 170 (432)
T d1qksa2 106 ---------EARSIETSKMEGWEDKYAIAGAY------WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILA 170 (432)
T ss_dssp ---------EEEEEEECCSTTCTTTEEEEEEE------ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred ---------CCCCEEEECCCCCCCCEEEEECC------CCCEEEEEECCCCCCEEEECCCCCCCCCEECCCCCCEEEEEE
T ss_conf ---------98776984321888888999817------898279990765542254024776435220168885058998
Q ss_pred CCCCCEEEEEECCCCCCCCCEEEEEECCCEE-EEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEE
Q ss_conf 3699969999628999999939999179805-879994068877589999945987258997168877499999207756
Q 000736 231 MPSGANIAAVYDRKSENKCPSIVFYERNGLE-RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1323)
Q Consensus 231 sPdG~lIAs~~~d~~~~~~~~V~l~e~nGl~-~~ef~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~n~~w 309 (1323)
+|+|..+..+..+ ...|.+|+..... .....++ ....+..++|+|||+.+++++.++ +.+.+|+..+...
T Consensus 171 s~dg~~~~vs~~~-----~~~i~~~d~~~~~~~~~~~i~--~g~~~~~~~~spdg~~~~va~~~~--~~v~v~d~~~~~~ 241 (432)
T d1qksa2 171 SHYRPEFIVNVKE-----TGKILLVDYTDLNNLKTTEIS--AERFLHDGGLDGSHRYFITAANAR--NKLVVIDTKEGKL 241 (432)
T ss_dssp CSSSSEEEEEETT-----TTEEEEEETTCSSEEEEEEEE--CCSSEEEEEECTTSCEEEEEEGGG--TEEEEEETTTTEE
T ss_pred CCCCCEEEEEECC-----CCEEEEEECCCCCCCEEEEEC--CCCCCCCCEECCCCCEEEEECCCC--CEEEEEECCCCEE
T ss_conf 7899989999816-----882999984378752279983--367542653889887999951666--3677761445268
Q ss_pred EEEEEEEEECC----CC-EEEEECCCCCCEEEEEECCCCEEEEEEEEEEEECCCEEEEEEECCEEEEEECCCCCCCCCCE
Q ss_conf 77769998259----83-99999159992799994499499999999521089906999919979994257767999830
Q 000736 310 YLKYEIRYLRR----DG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMY 384 (1323)
Q Consensus 310 yLkqel~~~~~----~~-~~v~W~p~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~i~lt~l~~~~vPpPm~ 384 (1323)
...+..... .. ....+...++ .+.....+.+.+.+++.. ....
T Consensus 242 --~~~~~~g~~~~~~~~~~~~~~~~~g~-----------------~~~~~~lg~~~v~~~~~~--------~~~~----- 289 (432)
T d1qksa2 242 --VAIEDTGGQTPHPGRGANFVHPTFGP-----------------VWATSHMGDDSVALIGTD--------PEGH----- 289 (432)
T ss_dssp --EEEEECSSSSBCCTTCEEEEETTTEE-----------------EEEEEBSSSSEEEEEECC--------TTTC-----
T ss_pred --EEEECCCCCCCCCCCCCCEECCCCCC-----------------EECCCCCCCCEEEECCCC--------CCCC-----
T ss_conf --88721486224567664101489883-----------------102135688358762456--------6555-----
Q ss_pred EEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCEEEEE
Q ss_conf 12102899889999922999999999988981999978998852223597124742024456683799999449849999
Q 000736 385 LFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSV 464 (1323)
Q Consensus 385 ~~~l~~~~~V~~VaFspdg~~~~LAs~s~Dg~I~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~ 464 (1323)
..+...|..++|+|++ ..+++.+++++.++|....... + ......++ +||+..+++
T Consensus 290 ---~~~~~~v~~~~~~~~g--~~~~~~s~p~~~~lw~~~~~~~------~------------~~~~~sv~-vpDg~~la~ 345 (432)
T d1qksa2 290 ---PDNAWKILDSFPALGG--GSLFIKTHPNSQYLYVDATLNP------E------------AEISGSVA-VFDIKAMTG 345 (432)
T ss_dssp ---TTTBTSEEEEEECSCS--CCCCEECCTTCSEEEEECTTCS------S------------HHHHTCEE-EEEGGGCCC
T ss_pred ---CCCCCEEEEEEECCCC--CEEEEEECCCCCCEEECCCCCC------C------------CCEEEEEE-EEECHHHCC
T ss_conf ---4656577799886899--7688872688641021126788------8------------77035999-996246104
Q ss_pred EECCCCCEEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEE--
Q ss_conf 826998702899831266864441124444211455523422245532034310145770899810788975699995--
Q 000736 465 SHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQF-- 542 (1323)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~q~-- 542 (1323)
++.+ ..+.+|.... .. ......++++++.+|| |+..+++-.
T Consensus 346 ~s~d--~~~k~w~~~~------------~~----------------------~l~~~~~~v~~~~fS~-DG~~v~~S~~~ 388 (432)
T d1qksa2 346 DGSD--PEFKTLPIAE------------WA----------------------GITEGQPRVVQGEFNK-DGTEVWFSVWN 388 (432)
T ss_dssp SSSC--CCEEEECHHH------------HH----------------------TCCSSCCEEEEEEECT-TSSEEEEEEEC
T ss_pred CCCC--CCEEECCCCC------------CC----------------------CCCCCCCCEEEEEECC-CCCEEEEEEEC
T ss_conf 5567--8448633434------------44----------------------4578998689767989-99999999704
Q ss_pred ---ECCEEEEEECCC
Q ss_conf ---187599992544
Q 000736 543 ---HGGKISEYMSRV 554 (1323)
Q Consensus 543 ---~dG~v~~~~~~~ 554 (1323)
.+|+|..|+...
T Consensus 389 ~~~~~g~i~i~D~~T 403 (432)
T d1qksa2 389 GKDQESALVVVDDKT 403 (432)
T ss_dssp CTTSCCEEEEEETTT
T ss_pred CCCCCCCEEEEECCC
T ss_conf 888888689999999
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=5.3e-17 Score=134.08 Aligned_cols=269 Identities=10% Similarity=0.126 Sum_probs=167.0
Q ss_pred CCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEE-EEECEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCEEEEE
Q ss_conf 99789999903999899996899599996899919-99100359599999937899699996996499994047210123
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1323)
Q Consensus 75 ~~~V~~i~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~d~tI~l~t~~~d~~~e~ 153 (1323)
...|++++ +|++.|++|+.||+|++||.+++++ ..+..|.+.|++++| |+++|++++.|++|.+|..........
T Consensus 15 ~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~ 90 (293)
T d1p22a2 15 SKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNT 90 (293)
T ss_dssp CCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEE
T ss_pred CCCEEEEE--ECCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEC--CCCEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 99889998--76999999928993999999999199999267787763423--630021001110110000024641001
Q ss_pred EECCCCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCE---EEEECCCCCCEEEEEE
Q ss_conf 2034679740014762468998578999068857999225544558898899997999936---6641567985458999
Q 000736 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL---QASSELKAFMGAVLEW 230 (1323)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~d~~v~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l---~~t~e~~~g~~~slaw 230 (1323)
.... ......+.+....++ ++. .++.+++|+...... ......+...+..+.|
T Consensus 91 ~~~~-----------------~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 146 (293)
T d1p22a2 91 LIHH-----------------CEAVLHLRFNNGMMV-TCS------KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF 146 (293)
T ss_dssp ECCC-----------------CSCEEEEECCTTEEE-EEE------TTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE
T ss_pred CCCC-----------------CCCCCCCCCCCCCEE-ECC------CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 1111-----------------100001111110000-013------5663068613445444212100011354311000
Q ss_pred CCCCCEEEEEECCCCCCCCCEEEEEECC-CEEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEE
Q ss_conf 3699969999628999999939999179-805879994068877589999945987258997168877499999207756
Q 000736 231 MPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1323)
Q Consensus 231 sPdG~lIAs~~~d~~~~~~~~V~l~e~n-Gl~~~ef~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~n~~w 309 (1323)
.+ ..+++++.| ..|.+|+.+ +..... +..+ ...+..+.|+ +..|+++..|+ +|++|+..+...
T Consensus 147 ~~--~~~~~~s~d------~~i~~~d~~~~~~~~~--~~~~-~~~v~~~~~~--~~~l~~~~~dg---~i~i~d~~~~~~ 210 (293)
T d1p22a2 147 DD--KYIVSASGD------RTIKVWNTSTCEFVRT--LNGH-KRGIACLQYR--DRLVVSGSSDN---TIRLWDIECGAC 210 (293)
T ss_dssp ET--TEEEEEETT------SEEEEEETTTCCEEEE--EECC-SSCEEEEEEE--TTEEEEEETTS---CEEEEETTTCCE
T ss_pred CC--CCCCCCCCC------CCEEEECCCCCCEEEE--ECCC-CCCCCCCCCC--CCEEEEECCCC---EEEEEECCCCEE
T ss_conf 00--220110699------8604100788838899--7155-4453221689--87588765899---899986655614
Q ss_pred EEEEEEEEECCCCEEEEECCCCCCEEEEEECCCCEEEEEEEEEEEECCCEEEEEEECCEEEEEECCCCCC----CCCCEE
Q ss_conf 7776999825983999991599927999944994999999995210899069999199799942577679----998301
Q 000736 310 YLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLM----PPPMYL 385 (1323)
Q Consensus 310 yLkqel~~~~~~~~~v~W~p~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~i~lt~l~~~~v----PpPm~~ 385 (1323)
. .. +.........+.++.. .|..+..+|. +++|++..... +...+.
T Consensus 211 ~--~~--~~~~~~~v~~~~~~~~-~l~sg~~dg~-------------------------i~iwd~~~~~~~~~~~~~~~~ 260 (293)
T d1p22a2 211 L--RV--LEGHEELVRCIRFDNK-RIVSGAYDGK-------------------------IKVWDLVAALDPRAPAGTLCL 260 (293)
T ss_dssp E--EE--ECCCSSCEEEEECCSS-EEEEEETTSC-------------------------EEEEEHHHHTSTTSCTTTTEE
T ss_pred E--EE--ECCCCEEEEECCCCCE-EEEEECCCCE-------------------------EEEEECCCCCCCCCCCCCEEE
T ss_conf 6--65--2143100000145410-7999867997-------------------------999988888644456775455
Q ss_pred EEE-CCCCCEEEEEEECCCCCCEEEEEECCCCEEEEE
Q ss_conf 210-289988999992299999999998898199997
Q 000736 386 FSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1323)
Q Consensus 386 ~~l-~~~~~V~~VaFspdg~~~~LAs~s~Dg~I~lw~ 421 (1323)
.++ .|.+.|++|+| ++ +.|++++.||+|++|+
T Consensus 261 ~~~~~H~~~V~~v~~--d~--~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 261 RTLVEHSGRVFRLQF--DE--FQIVSSSHDDTILIWD 293 (293)
T ss_dssp EEECCCSSCCCCEEE--CS--SCEEECCSSSEEEEEC
T ss_pred EEECCCCCCEEEEEE--CC--CEEEEEECCCEEEEEC
T ss_conf 784588998899997--19--9999992299899959
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.86 E-value=4e-16 Score=127.79 Aligned_cols=265 Identities=12% Similarity=0.057 Sum_probs=138.2
Q ss_pred EEECCCCEEEEECCCCEEE-EECEECCCEEEEEECCCCCEEEE-EECCCCEEEEEE-CCCEEEEEEECCCCCCCEECCCC
Q ss_conf 9968995999968999199-91003595999999378996999-969964999940-47210123203467974001476
Q 000736 92 VGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGV-TTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPE 168 (1323)
Q Consensus 92 ~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~-~s~d~tI~l~t~-~~d~~~e~~l~~~~~~~~Vs~tq 168 (1323)
+.+.+|+|.+||..++++. .+. ..+....++|||||+.|++ .+.+++|.+|+. ....+.....+
T Consensus 7 ~~~~~~~v~v~D~~t~~~~~~i~-~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~------------ 73 (301)
T d1l0qa2 7 ANSESDNISVIDVTSNKVTATIP-VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG------------ 73 (301)
T ss_dssp EETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS------------
T ss_pred EECCCCEEEEEECCCCEEEEEEE-CCCCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEEEECC------------
T ss_conf 97899989999999995999998-89983699992898999999789998999999989410320002------------
Q ss_pred CCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCC
Q ss_conf 24689985789990688579992255445588988999979999366641567985458999369996999962899999
Q 000736 169 LSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENK 248 (1323)
Q Consensus 169 f~~~d~~v~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~g~~~slawsPdG~lIAs~~~d~~~~~ 248 (1323)
.....++|++||.++. ++. ..+..+++|+..+++........ .....++|+|+|+.+..+...
T Consensus 74 -----~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~----- 136 (301)
T d1l0qa2 74 -----SSPQGVAVSPDGKQVY-VTN-----MASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNG----- 136 (301)
T ss_dssp -----SSEEEEEECTTSSEEE-EEE-----TTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETT-----
T ss_pred -----CCCCCCCCCCCCCCCC-CCC-----CCCCEEEECCCCCCEEEEECCCC-CCCEEEEEECCCCEEEEEECC-----
T ss_conf -----4643110001111111-111-----11100110012430243202444-442378760589715542011-----
Q ss_pred CCEEEEEECC-CEEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEEEEEEEEECCCCEEEEE
Q ss_conf 9939999179-805879994068877589999945987258997168877499999207756777699982598399999
Q 000736 249 CPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMW 327 (1323)
Q Consensus 249 ~~~V~l~e~n-Gl~~~ef~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~n~~wyLkqel~~~~~~~~~v~W 327 (1323)
...+.+|+.. +.....+ . ....+..++|+||+..+.++..+. ..+.+|........ ..+.. ...+..+.|
T Consensus 137 ~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~ 207 (301)
T d1l0qa2 137 DKTVSVINTVTKAVINTV--S--VGRSPKGIAVTPDGTKVYVANFDS--MSISVIDTVTNSVI--DTVKV-EAAPSGIAV 207 (301)
T ss_dssp TTEEEEEETTTTEEEEEE--E--CCSSEEEEEECTTSSEEEEEETTT--TEEEEEETTTTEEE--EEEEC-SSEEEEEEE
T ss_pred CCCEEEEECCCCCEEEEC--C--CCCCCEEEEEECCCCCEEEECCCC--CCCCCCCCCCEEEE--ECCCC-CCCCCEEEC
T ss_conf 110011000146303531--5--678842888604654013101211--11111111100011--10133-577503110
Q ss_pred CCCCCCEEEEEECCCCEEEEEEEEEEEECCCEEEEEEECCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCE
Q ss_conf 15999279999449949999999952108990699991997999425776799983012102899889999922999999
Q 000736 328 HPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNC 407 (1323)
Q Consensus 328 ~p~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~i~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFspdg~~~~ 407 (1323)
++++.. +.+...++ ..+.+.++|..+- ....++.+...+.+++||||| +.
T Consensus 208 ~~~g~~-~~v~~~~~--------------~~~~v~v~D~~t~-------------~~~~~~~~~~~~~~va~spdg--~~ 257 (301)
T d1l0qa2 208 NPEGTK-AYVTNVDK--------------YFNTVSMIDTGTN-------------KITARIPVGPDPAGIAVTPDG--KK 257 (301)
T ss_dssp CTTSSE-EEEEEECS--------------SCCEEEEEETTTT-------------EEEEEEECCSSEEEEEECTTS--SE
T ss_pred CCCCCC-CCCCCCCC--------------EEEEEEEEECCCC-------------EEEEEECCCCCEEEEEEECCC--CE
T ss_conf 111101-11100210--------------0002323656998-------------199998489987799991898--99
Q ss_pred E-EEEECCCCEEEEECCCC
Q ss_conf 9-99988981999978998
Q 000736 408 L-AAILSDGCLCVVDLPAP 425 (1323)
Q Consensus 408 L-As~s~Dg~I~lw~~~~~ 425 (1323)
| ++...|++|.+|+..+.
T Consensus 258 l~va~~~~~~i~v~D~~t~ 276 (301)
T d1l0qa2 258 VYVALSFCNTVSVIDTATN 276 (301)
T ss_dssp EEEEETTTTEEEEEETTTT
T ss_pred EEEEECCCCEEEEEECCCC
T ss_conf 9999899996999999999
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.85 E-value=1.2e-16 Score=131.61 Aligned_cols=256 Identities=7% Similarity=-0.022 Sum_probs=153.5
Q ss_pred CCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEECCC-CEEEEEEC
Q ss_conf 56566215796625898999993797289982244334333112022222222357999978999990399-98999968
Q 000736 17 QSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEK-EALIVGTS 95 (1323)
Q Consensus 17 ~~~~~~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~i~~spd~-~~La~as~ 95 (1323)
+.|.+.+.+++|.++++.|++++.|+.|..|+. .++........ ..+| .+.|.+++|+|++ ..|++++.
T Consensus 8 ~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~--~~~~~~~~~~~----~~~h----~~~V~~v~f~~~~~~~l~sg~~ 77 (342)
T d1yfqa_ 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKF--DIQAKNVDLLQ----SLRY----KHPLLCCNFIDNTDLQIYVGTV 77 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEE--ETTTTEEEEEE----EEEC----SSCEEEEEEEESSSEEEEEEET
T ss_pred CCCCCCEEEEEEECCCCEEEEEECCCEEEEEEC--CCCCCCEEEEE----ECCC----CCCEEEEEEECCCCCEEEECCC
T ss_conf 899897888999589999999979992999975--69986368988----5589----9988999995899978998126
Q ss_pred CCCEEEEECCCCE-EE-EECEECCCEEEEEECCCCCEEEEEECCCCEEEEEE-CCCEEEEEEECCCCCCCEECCCCCCCC
Q ss_conf 9959999689991-99-91003595999999378996999969964999940-472101232034679740014762468
Q 000736 96 SGLLLLHSVDGNA-TE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSS 172 (1323)
Q Consensus 96 dG~I~lw~~~~~~-~e-~vg~~~~~I~~~awSPDG~~LA~~s~d~tI~l~t~-~~d~~~e~~l~~~~~~~~Vs~tqf~~~ 172 (1323)
||.|.+|+..... .. ....+........+.+++..+++++.++++.+|+. ............... ..
T Consensus 78 d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~----------~~ 147 (342)
T d1yfqa_ 78 QGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN----------NT 147 (342)
T ss_dssp TSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS----------SS
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEECCCCCC----------CC
T ss_conf 53114542044320000011111111111111111111110122211102023444330230002430----------01
Q ss_pred CCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEE---ECCCCCCEEEEEEC-CCCCEEEEEECCCCCCC
Q ss_conf 998578999068857999225544558898899997999936664---15679854589993-69996999962899999
Q 000736 173 FSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS---SELKAFMGAVLEWM-PSGANIAAVYDRKSENK 248 (1323)
Q Consensus 173 d~~v~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t---~e~~~g~~~slaws-PdG~lIAs~~~d~~~~~ 248 (1323)
........+.+++..++ +++ .++.+++|+...+..... .........+.++. +++..+++++.+
T Consensus 148 ~~~~~~~~~~~~~~~~~-~~~------~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d----- 215 (342)
T d1yfqa_ 148 KVKNKIFTMDTNSSRLI-VGM------NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSID----- 215 (342)
T ss_dssp SSCCCEEEEEECSSEEE-EEE------STTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETT-----
T ss_pred CCEEEEEEEECCCCCEE-EEC------CCCCEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCCEEEEECCC-----
T ss_conf 20000010001687024-651------798478876056763411121025422101467636999878865489-----
Q ss_pred CCEEEEEECCCE-------EEEEEEEC------CCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCE
Q ss_conf 993999917980-------58799940------6887758999994598725899716887749999920775
Q 000736 249 CPSIVFYERNGL-------ERSSFDIN------EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1323)
Q Consensus 249 ~~~V~l~e~nGl-------~~~ef~l~------~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~n~~ 308 (1323)
..+.+|..+.. ....+... ..+...|.+|+|+|++.+||+++.|+ +|++|+..+.+
T Consensus 216 -g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg---~v~vWD~~~~~ 284 (342)
T d1yfqa_ 216 -GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDG---IISCWNLQTRK 284 (342)
T ss_dssp -SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTS---CEEEEETTTTE
T ss_pred -CEEEEEEECCCCCEEECCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCEEEEECCCC---EEEEEECCCCC
T ss_conf -9599998059864011123512565553147776235431599669844799987999---89999999894
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.84 E-value=5.2e-18 Score=141.26 Aligned_cols=272 Identities=11% Similarity=0.109 Sum_probs=173.4
Q ss_pred EEEEECEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCEEEEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCCCE
Q ss_conf 19991003595999999378996999969964999940472101232034679740014762468998578999068857
Q 000736 108 ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKY 187 (1323)
Q Consensus 108 ~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tI~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~d~~v~~IsWs~DG~~ 187 (1323)
.+..+..|.++|++++||| |++++.||+|++| ++..... +|...+.++.|++++.+
T Consensus 5 ~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~W----d~~~~~~----------------~h~~~V~~~~~~~~~~~ 60 (287)
T d1pgua2 5 VLKTISGHNKGITALTVNP----LISGSYDGRIMEW----SSSSMHQ----------------DHSNLIVSLDNSKAQEY 60 (287)
T ss_dssp EEEEECCCSSCEEEEETTT----TEEEETTSCEEET----TTTEEEC----------------CCCSCEEEEECCSTTCC
T ss_pred EEEEECCCCCCEEEEEECC----EEEEECCCEEEEE----ECCCCCC----------------CCCCCEEEEEECCCCEE
T ss_conf 3499988798649999895----7898489919999----8999888----------------87787899996599728
Q ss_pred EEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEE-CCCEEEEEEE
Q ss_conf 999225544558898899997999936664156798545899936999699996289999999399991-7980587999
Q 000736 188 FATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFD 266 (1323)
Q Consensus 188 lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~g~~~slawsPdG~lIAs~~~d~~~~~~~~V~l~e-~nGl~~~ef~ 266 (1323)
++++ . |+++|+|+....+ ....+..++++|+|..++++..+ .+.+|+ .++.....+.
T Consensus 61 -~s~s-~------D~~v~~w~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 118 (287)
T d1pgua2 61 -SSIS-W------DDTLKVNGITKHE-------FGSQPKVASANNDGFTAVLTNDD-------DLLILQSFTGDIIKSVR 118 (287)
T ss_dssp -EEEE-T------TTEEEETTEEEEE-------CSSCEEEEEECSSSEEEEEETTS-------EEEEEETTTCCEEEEEE
T ss_pred -EEEE-E------CCCCCCCCCCCCC-------CCCCEEEEEECCCCCEEEEEECC-------CCEEEECCCEEEEEECC
T ss_conf -9886-1------0122211111111-------12210146641678569996033-------21000011003543101
Q ss_pred ECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEEEEEEEEECCCC-EEEEECCCCCCEEEEEECCCCEE
Q ss_conf 40688775899999459872589971688774999992077567776999825983-99999159992799994499499
Q 000736 267 INEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQIT 345 (1323)
Q Consensus 267 l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~n~~wyLkqel~~~~~~~-~~v~W~p~~~~~L~~~~~~g~~~ 345 (1323)
. ... ..+++|++..+++++.++ ..|++|+..+.. ....+....... ..+.|+|++.+ |.+++.+|.+.
T Consensus 119 ~----~~~--~~~~~~~~~~~~v~~~~~--~~v~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~-l~~g~~dg~i~ 187 (287)
T d1pgua2 119 L----NSP--GSAVSLSQNYVAVGLEEG--NTIQVFKLSDLE--VSFDLKTPLRAKPSYISISPSETY-IAAGDVMGKIL 187 (287)
T ss_dssp C----SSC--EEEEEECSSEEEEEETTT--SCEEEEETTEEE--EEEECSSCCSSCEEEEEECTTSSE-EEEEETTSCEE
T ss_pred C----CCE--EEEEECCCCCEEEECCCC--CEEEEEECCCCC--EEEEEEECCCCCEEEEEECCCCCC-CCCCCCCCCCC
T ss_conf 2----220--356521475111000221--000210001221--000121024785369995167652-11011111100
Q ss_pred EEEEEEEEEECCCEEEEEEECCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEECCCC--------CCEEEEEECCCCE
Q ss_conf 99999952108990699991997999425776799983012102899889999922999--------9999999889819
Q 000736 346 TYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSS--------KNCLAAILSDGCL 417 (1323)
Q Consensus 346 ~~~~~~~~~~~d~~~v~viDg~~i~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFspdg~--------~~~LAs~s~Dg~I 417 (1323)
.|+.. + + ..... ....|..+|.+++|+|++. ...+|+++.|++|
T Consensus 188 ----i~d~~--~--------~-~~~~~-------------~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i 239 (287)
T d1pgua2 188 ----LYDLQ--S--------R-EVKTS-------------RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNI 239 (287)
T ss_dssp ----EEETT--T--------T-EEEEC-------------CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCE
T ss_pred ----CEEEC--C--------C-CCCCC-------------CCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCEE
T ss_conf ----00002--3--------3-21100-------------0111111110000013654100126788702766499959
Q ss_pred EEEECCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCCEEEEEEE
Q ss_conf 9997899885222359712474202445668379999944984999982699870289983
Q 000736 418 CVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1323)
Q Consensus 418 ~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1323)
++|+...+... +. ....|...+..+.|+|++.++..+.+ ..+.+|.+
T Consensus 240 ~iw~~~~~~~~-------~~----~~~~h~~~V~~v~~~~~~~l~s~g~D---~~v~iW~i 286 (287)
T d1pgua2 240 FIYSVKRPMKI-------IK----ALNAHKDGVNNLLWETPSTLVSSGAD---ACIKRWNV 286 (287)
T ss_dssp EEEESSCTTCC-------EE----ETTSSTTCEEEEEEEETTEEEEEETT---SCEEEEEE
T ss_pred EEEECCCCCEE-------EE----EECCCCCCEEEEEECCCCEEEEEECC---CEEEEEEE
T ss_conf 99888999758-------99----92787898589999899989999799---92999997
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.83 E-value=2.6e-15 Score=121.93 Aligned_cols=261 Identities=12% Similarity=0.070 Sum_probs=174.5
Q ss_pred EEEE-ECCCCEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEECCCCEEE-EEECCCCEEEEECCCCEE-EE
Q ss_conf 9999-37972899822443343331120222222223579999789999903999899-996899599996899919-99
Q 000736 35 LFFA-SSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALI-VGTSSGLLLLHSVDGNAT-EV 111 (1323)
Q Consensus 35 l~~~-s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~i~~spd~~~La-~as~dG~I~lw~~~~~~~-e~ 111 (1323)
+|++ ++++.|..||+ .+++. +.+++ . ++.+.+++|+|||+.|+ .++.+|.|.+|+..+.+. ..
T Consensus 4 ~yV~~~~~~~v~v~D~--~t~~~---~~~i~-------~--g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~ 69 (301)
T d1l0qa2 4 AYIANSESDNISVIDV--TSNKV---TATIP-------V--GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT 69 (301)
T ss_dssp EEEEETTTTEEEEEET--TTTEE---EEEEE-------C--SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred EEEEECCCCEEEEEEC--CCCEE---EEEEE-------C--CCCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEE
T ss_conf 9999789998999999--99959---99998-------8--998369999289899999978999899999998941032
Q ss_pred ECEECCCEEEEEECCCCCEEEEEE-CCCCEEEEEEC-CCEEEEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCCCEEE
Q ss_conf 100359599999937899699996-99649999404-7210123203467974001476246899857899906885799
Q 000736 112 VGRVEGGVRFISPSPDGDLLGVTT-GFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFA 189 (1323)
Q Consensus 112 vg~~~~~I~~~awSPDG~~LA~~s-~d~tI~l~t~~-~d~~~e~~l~~~~~~~~Vs~tqf~~~d~~v~~IsWs~DG~~lA 189 (1323)
+.. ...+..++|+|||..+++.. .++.+.+|... ......... ......+.|+|||.++.
T Consensus 70 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~dg~~~~ 131 (301)
T d1l0qa2 70 VPA-GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-----------------GKSPLGLALSPDGKKLY 131 (301)
T ss_dssp EEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-----------------SSSEEEEEECTTSSEEE
T ss_pred EEC-CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCC-----------------CCCCEEEEEECCCCEEE
T ss_conf 000-246431100011111111111110011001243024320244-----------------44423787605897155
Q ss_pred EEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEECCCEEEEEEEECC
Q ss_conf 92255445588988999979999366641567985458999369996999962899999993999917980587999406
Q 000736 190 TLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINE 269 (1323)
Q Consensus 190 tvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~g~~~slawsPdG~lIAs~~~d~~~~~~~~V~l~e~nGl~~~ef~l~~ 269 (1323)
++. ..+..+.+|+..++..........+ ...++|+|+++.+.++..+. ..+.++......... .+.
T Consensus 132 -~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~- 197 (301)
T d1l0qa2 132 -VTN-----NGDKTVSVINTVTKAVINTVSVGRS-PKGIAVTPDGTKVYVANFDS-----MSISVIDTVTNSVID-TVK- 197 (301)
T ss_dssp -EEE-----TTTTEEEEEETTTTEEEEEEECCSS-EEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEE-EEE-
T ss_pred -EEE-----CCCCCEEEEECCCCCEEEECCCCCC-CEEEEEECCCCCEEEECCCC-----CCCCCCCCCCEEEEE-CCC-
T ss_conf -420-----1111001100014630353156788-42888604654013101211-----111111111000111-013-
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEEEEEEEEECCCCEEEEECCCCCCEEEEEECCCCEE
Q ss_conf 8877589999945987258997168877499999207756777699982598399999159992799994499499
Q 000736 270 QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQIT 345 (1323)
Q Consensus 270 ~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~n~~wyLkqel~~~~~~~~~v~W~p~~~~~L~~~~~~g~~~ 345 (1323)
....+..++|++++..++++..+...++|++|+..+... ...+... ..+..+.|+|++.+.+.....++.+.
T Consensus 198 -~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~--~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~ 269 (301)
T d1l0qa2 198 -VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI--TARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVS 269 (301)
T ss_dssp -CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE--EEEEECC-SSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred -CCCCCCEEECCCCCCCCCCCCCCCEEEEEEEEECCCCEE--EEEECCC-CCEEEEEEECCCCEEEEEECCCCEEE
T ss_conf -357750311011110111100210000232365699819--9998489-98779999189899999989999699
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.82 E-value=6e-15 Score=119.38 Aligned_cols=311 Identities=8% Similarity=-0.018 Sum_probs=179.3
Q ss_pred CCCEEEEEEECCCCEEEEEE-----CCCCEEEEECCCCEEE-EECEECCCEEEEEECCCCCEEEEEEC----------CC
Q ss_conf 99789999903999899996-----8995999968999199-91003595999999378996999969----------96
Q 000736 75 GDSITAFDYLMEKEALIVGT-----SSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTG----------FG 138 (1323)
Q Consensus 75 ~~~V~~i~~spd~~~La~as-----~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~----------d~ 138 (1323)
.+.+.+++++||++.+++.. ..++|.+||..++++- .+.. +....++|||||++|++++. ++
T Consensus 20 ~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~--~~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~ 97 (373)
T d2madh_ 20 DGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG--GFLPNPVAAHSGSEFALASTSFSRIAKGKRTD 97 (373)
T ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEEC--CCCCCEEECCCCCEEEEEEECCCCCCCCCCCE
T ss_conf 8986563018999789997342257876599998999979999957--98860798689998999960577532124531
Q ss_pred CEEEEE-ECCCEEEEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEE
Q ss_conf 499994-0472101232034679740014762468998578999068857999225544558898899997999936664
Q 000736 139 QILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS 217 (1323)
Q Consensus 139 tI~l~t-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~d~~v~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t 217 (1323)
.|.+|+ ....+.......... ...+ ......+.|++||+.+. +...+ .+..+.+|+...++....
T Consensus 98 ~v~v~D~~t~~~~~~~~~~~~~-~~~~--------~~~~~~~~~s~dg~~~~-v~~~~----~~~~~~~~~~~~~~~~~~ 163 (373)
T d2madh_ 98 YVEVFDPVTFLPIADIELPDAP-RFDV--------GPYSWMNANTPNNADLL-FFQFA----AGPAVGLVVQGGSSDDQL 163 (373)
T ss_pred EEEEEECCCCCEEEEEECCCCC-EEEE--------CCCCCCEEEEECCCCEE-EEEEC----CCCCEEEEECCCCEEEEE
T ss_conf 8999977789388897268851-3685--------16897089985899379-99986----987467762368728998
Q ss_pred ECCCCCCEEEEEECCCCCEEE-EEECCCCCCCCCEEEEEECCCEEEEE-EEEC---CCCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 156798545899936999699-99628999999939999179805879-9940---688775899999459872589971
Q 000736 218 SELKAFMGAVLEWMPSGANIA-AVYDRKSENKCPSIVFYERNGLERSS-FDIN---EQIDSTVELLKWNCMSDLLAAVVR 292 (1323)
Q Consensus 218 ~e~~~g~~~slawsPdG~lIA-s~~~d~~~~~~~~V~l~e~nGl~~~e-f~l~---~~~~~~V~~laWSpDg~~LA~~~~ 292 (1323)
.. ...+++++|+|+.+. +.+.+ ..+.+|+..+..... .... .........+.+++++..++.. .
T Consensus 164 ~~----~~~~~~~s~~g~~~~v~~~~d------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 232 (373)
T d2madh_ 164 LS----SPTCYHIHPGAPSTFYLLCAQ------GGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-Y 232 (373)
T ss_pred EC----CCEEEEEECCCCCEEEEECCC------CEEEEEECCCCEEEEEEEEECCCCCCCCEEEEEEECCCCEEEEEC-C
T ss_conf 24----520699962899199999479------939999747742667886300366753043458878994299925-8
Q ss_pred CCCCCEEEEEEEECCEEEEEEEEEEECCCCEEEEECCCCCCEEEEEECCCCEEEEEEEEEEEECCCEEEEEEECCEEEEE
Q ss_conf 68877499999207756777699982598399999159992799994499499999999521089906999919979994
Q 000736 293 FEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVT 372 (1323)
Q Consensus 293 d~~~~~VqlW~~~n~~wyLkqel~~~~~~~~~v~W~p~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~i~lt 372 (1323)
++ .+.+|+..+........+...........|.|.... ...+..++... +.....+...+....++.+.++
T Consensus 233 ~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~-----~~~~~~~~~~~~~~~~~~v~~~ 303 (373)
T d2madh_ 233 SG---KILQADISAAGATNKAPIDALSGGRKADTWRPGGWQ-QVAYLKSSDGI-----YLLTSEQSAWKLHAAAKEVTSV 303 (373)
T ss_pred CC---EEEEEECCCCEEEEEEEECCCCCCEEEEEECCCCCE-EEEEECCCCEE-----EEECCCCCEEEEECCCCEEEEE
T ss_conf 96---599997689907897763056475786641367413-35771499759-----9954888247862589869999
Q ss_pred ECCCCCCCCCCEEEEECCCCCEEEEEEECCCCCC--EEEEEECCCCEEEEECCCCCCC
Q ss_conf 2577679998301210289988999992299999--9999988981999978998852
Q 000736 373 PLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKN--CLAAILSDGCLCVVDLPAPDML 428 (1323)
Q Consensus 373 ~l~~~~vPpPm~~~~l~~~~~V~~VaFspdg~~~--~LAs~s~Dg~I~lw~~~~~~~~ 428 (1323)
+.... .....+.+...+.+++||||| + .+++...|++|++|+..+....
T Consensus 304 d~~t~-----~~~~~~~~~~~~~~~a~spDG--~~~l~vt~~~d~~v~v~D~~tg~~~ 354 (373)
T d2madh_ 304 TGLVG-----QTSSQISLGHDVDAISVAQDG--GPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred ECCCC-----CEEEEECCCCCEEEEEECCCC--CEEEEEEECCCCEEEEEECCCCCEE
T ss_conf 89999-----698986689982589999899--9899999679992999999999899
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.79 E-value=1.6e-17 Score=137.84 Aligned_cols=309 Identities=11% Similarity=-0.076 Sum_probs=119.7
Q ss_pred EEECCCCEEEEEECCCCEEEEECCCCEE-EEE-CEECCCEEEEEECCCCCEEEEE-ECCCCEEEEEE-CCCEEEEEEECC
Q ss_conf 9903999899996899599996899919-991-0035959999993789969999-69964999940-472101232034
Q 000736 82 DYLMEKEALIVGTSSGLLLLHSVDGNAT-EVV-GRVEGGVRFISPSPDGDLLGVT-TGFGQILVMTH-DWDLLYENPLEE 157 (1323)
Q Consensus 82 ~~spd~~~La~as~dG~I~lw~~~~~~~-e~v-g~~~~~I~~~awSPDG~~LA~~-s~d~tI~l~t~-~~d~~~e~~l~~ 157 (1323)
+|+++++.|++++.+++|.+||+.++++ ... ..+..++.+++|||||+.+.++ ..+++|.+|+. .++.+.......
T Consensus 3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~ 82 (346)
T d1jmxb_ 3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS 82 (346)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC
T ss_pred CCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCC
T ss_conf 58899969999869997999999999899999948999704599978989999997899939999675671312310365
Q ss_pred CCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCC------CCCCCEEEEEECCCCCEEEEECC--CCCCEEEEE
Q ss_conf 6797400147624689985789990688579992255445------58898899997999936664156--798545899
Q 000736 158 LAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNS------SKLHKRLKVWERDSGTLQASSEL--KAFMGAVLE 229 (1323)
Q Consensus 158 ~~~~~~Vs~tqf~~~d~~v~~IsWs~DG~~lAtvss~d~~------~~~d~~irVWd~~~G~l~~t~e~--~~g~~~sla 229 (1323)
.. .. +......++|+|||+++. ++..+.. ...+..+++|+..+|+....... .......+.
T Consensus 83 ~~-~~---------~~~~~~~v~~s~DG~~l~-v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (346)
T d1jmxb_ 83 VP-GE---------VGRSMYSFAISPDGKEVY-ATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMR 151 (346)
T ss_dssp ST-TE---------EEECSSCEEECTTSSEEE-EEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEE
T ss_pred CC-CC---------CCCCEEEEEEECCCCEEE-EEECCCCCEEEEECCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEE
T ss_conf 43-45---------477417999905888899-97057752156514676248998525632656887310247439999
Q ss_pred ECCCCCEEEEEECCCCCCCCCEEEEEEC-CCEEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCE
Q ss_conf 9369996999962899999993999917-980587999406887758999994598725899716887749999920775
Q 000736 230 WMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1323)
Q Consensus 230 wsPdG~lIAs~~~d~~~~~~~~V~l~e~-nGl~~~ef~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~n~~ 308 (1323)
++++|.++++.. .+.+|+. ++..... ++. ......+.|+|++..+....... ..+.+|......
T Consensus 152 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 216 (346)
T d1jmxb_ 152 AADDGSLYVAGP---------DIYKMDVKTGKYTVA--LPL--RNWNRKGYSAPDVLYFWPHQSPR--HEFSMLYTIARF 216 (346)
T ss_dssp ECTTSCEEEESS---------SEEEECTTTCCEEEE--ECS--TTCCCTTBCCCBCCCCCCCCCTT--CEEEEEEEEEEC
T ss_pred ECCCCEEEEECC---------CCEEEECCCCCEEEE--EEC--CCCCCCEEEECCCCEEEEEECCC--CCEEEEEEEEEE
T ss_conf 527878998479---------626998069978999--964--89866237712552899986499--816765123111
Q ss_pred EEEEEEEEEECCCCEEEEECCCCCCEEEEEECCCCEEEEEEEEEEEECCCEEEEEEECCEEEEEECCCCCCCCCCEEEEE
Q ss_conf 67776999825983999991599927999944994999999995210899069999199799942577679998301210
Q 000736 309 WYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL 388 (1323)
Q Consensus 309 wyLkqel~~~~~~~~~v~W~p~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~i~lt~l~~~~vPpPm~~~~l 388 (1323)
.-....+...........|+.............+........+ .+++. .++....+.+.+|+.... .....+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~v~v~d~~~~-----~~~~~~ 288 (346)
T d1jmxb_ 217 KDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLR--SPKDP-NQIYGVLNRLAKYDLKQR-----KLIKAA 288 (346)
T ss_dssp -------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEE--CSSCT-TEEEEEESEEEEEETTTT-----EEEEEE
T ss_pred CCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEE--ECCCC-EEEEECCCEEEEEECCCC-----CEEEEE
T ss_conf 2673257540478349999777883687876315660688897--17997-899942983899989999-----399997
Q ss_pred CCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCC
Q ss_conf 28998899999229999999999889819999789988
Q 000736 389 KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPD 426 (1323)
Q Consensus 389 ~~~~~V~~VaFspdg~~~~LAs~s~Dg~I~lw~~~~~~ 426 (1323)
.+...+.+++||||| +.+++++.||+|.+|+..+..
T Consensus 289 ~~~~~~~~va~s~DG--~~l~v~~~d~~v~v~D~~t~~ 324 (346)
T d1jmxb_ 289 NLDHTYYCVAFDKKG--DKLYLGGTFNDLAVFNPDTLE 324 (346)
T ss_dssp ECSSCCCEEEECSSS--SCEEEESBSSEEEEEETTTTE
T ss_pred CCCCCEEEEEECCCC--CEEEEEECCCCEEEEECCCCC
T ss_conf 499977899996899--999999489929999996587
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=7.6e-16 Score=125.79 Aligned_cols=190 Identities=13% Similarity=0.043 Sum_probs=102.5
Q ss_pred EEEEECCCCEEEEECCC-CEEEEEC--EECCCEEEEEECCCCCEEEEEE-CCCCEEEEEECCC-EEEEEEECCCCCCCEE
Q ss_conf 99996899599996899-9199910--0359599999937899699996-9964999940472-1012320346797400
Q 000736 90 LIVGTSSGLLLLHSVDG-NATEVVG--RVEGGVRFISPSPDGDLLGVTT-GFGQILVMTHDWD-LLYENPLEELAEGFDV 164 (1323)
Q Consensus 90 La~as~dG~I~lw~~~~-~~~e~vg--~~~~~I~~~awSPDG~~LA~~s-~d~tI~l~t~~~d-~~~e~~l~~~~~~~~V 164 (1323)
+++++++++|++|+++. +.++.+. .+.+.+..++|||||++|.+++ .|++|.+|+.+-+ ...+...+.
T Consensus 7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~------- 79 (333)
T d1ri6a_ 7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES------- 79 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE-------
T ss_pred EEECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEC-------
T ss_conf 9987899938999983999769999975799886899958979999997789969999996898707985301-------
Q ss_pred CCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEE--ECCCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 14762468998578999068857999225544558898899997999936664--1567985458999369996999962
Q 000736 165 HEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS--SELKAFMGAVLEWMPSGANIAAVYD 242 (1323)
Q Consensus 165 s~tqf~~~d~~v~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t--~e~~~g~~~slawsPdG~lIAs~~~ 242 (1323)
........++|+|||++++ ++.. .+..+++|+.+.+..... ...+.....++.++|+|+.+..+..
T Consensus 80 ------~~~~~p~~l~~spDg~~l~-v~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~ 147 (333)
T d1ri6a_ 80 ------ALPGSLTHISTDHQGQFVF-VGSY-----NAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL 147 (333)
T ss_dssp ------ECSSCCSEEEECTTSSEEE-EEET-----TTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEG
T ss_pred ------CCCCCCEEEEECCCCCEEE-ECCC-----CCCCEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCEEEECCCC
T ss_conf ------3699854999959998874-2056-----888302200111000000100377853149886301013102565
Q ss_pred CCCCCCCCEEEEEECCCE--EEEEE--EECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEE
Q ss_conf 899999993999917980--58799--9406887758999994598725899716887749999920
Q 000736 243 RKSENKCPSIVFYERNGL--ERSSF--DINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1323)
Q Consensus 243 d~~~~~~~~V~l~e~nGl--~~~ef--~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~ 305 (1323)
.. ..|..|+.... ..... ............++|++++..+....... +...+|...
T Consensus 148 ~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~--~~~~v~~~~ 207 (333)
T d1ri6a_ 148 KQ-----DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELN--SSVDVWELK 207 (333)
T ss_dssp GG-----TEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTT--TEEEEEESS
T ss_pred CC-----CEEEEEEECCCCCCEEEECEEEEEECCCCCCEEEEECCCEEEEEECCCC--CCEEEEEEC
T ss_conf 54-----2056897326874100100013340388752799960201478620466--721788510
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.78 E-value=1.1e-15 Score=124.51 Aligned_cols=53 Identities=9% Similarity=0.016 Sum_probs=37.7
Q ss_pred CEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCC
Q ss_conf 979994257767999830121028998899999229999999999889819999789988
Q 000736 367 SKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPD 426 (1323)
Q Consensus 367 ~~i~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFspdg~~~~LAs~s~Dg~I~lw~~~~~~ 426 (1323)
+.+.+|++... .....+.++..+.+++|+||| +.|++++.||+|.+|+..+..
T Consensus 260 ~~i~v~d~~~~-----~~~~~~~~~~~~~~~~~s~dG--~~l~v~~~~~~i~v~D~~t~~ 312 (337)
T d1pbyb_ 260 NVLESFDLEKN-----ASIKRVPLPHSYYSVNVSTDG--STVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp SEEEEEETTTT-----EEEEEEECSSCCCEEEECTTS--CEEEEESBSSEEEEEETTTCC
T ss_pred CCEEEEECCCC-----CEEEEECCCCCEEEEEECCCC--CEEEEEECCCCEEEEECCCCC
T ss_conf 52899989889-----699997489988999997899--999999499929999999876
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=1.4e-14 Score=116.75 Aligned_cols=281 Identities=13% Similarity=0.087 Sum_probs=139.3
Q ss_pred EEEEECEECCCEEEEEECCCCCEEEEEECCCCEEEEEE-CCCEEEEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCCC
Q ss_conf 19991003595999999378996999969964999940-47210123203467974001476246899857899906885
Q 000736 108 ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGK 186 (1323)
Q Consensus 108 ~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tI~l~t~-~~d~~~e~~l~~~~~~~~Vs~tqf~~~d~~v~~IsWs~DG~ 186 (1323)
++.+...+..+|+|+ +|||++||+++.|++|++|+. .+.++.. |.+|.+.+.+++| ||+
T Consensus 7 ~i~~~~~~~~~V~c~--~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~----------------l~~H~~~V~~v~~--~~~ 66 (293)
T d1p22a2 7 RIHCRSETSKGVYCL--QYDDQKIVSGLRDNTIKIWDKNTLECKRI----------------LTGHTGSVLCLQY--DER 66 (293)
T ss_dssp CEECCCSSCCCEEEE--ECCSSEEEEEESSSCEEEEESSSCCEEEE----------------ECCCSSCEEEEEC--CSS
T ss_pred EEECCCCCCCCEEEE--EECCCEEEEEECCCEEEEEECCCCCEEEE----------------EECCCCCEEEEEC--CCC
T ss_conf 984328999988999--87699999992899399999999919999----------------9267787763423--630
Q ss_pred EEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEECCCEEEE--E
Q ss_conf 79992255445588988999979999366641567985458999369996999962899999993999917980587--9
Q 000736 187 YFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERS--S 264 (1323)
Q Consensus 187 ~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~g~~~slawsPdG~lIAs~~~d~~~~~~~~V~l~e~nGl~~~--e 264 (1323)
+|+ +++. |+.+++|+...+........... ...++.+....++++..+ ..+.+|+....... .
T Consensus 67 ~l~-s~s~------D~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 131 (293)
T d1p22a2 67 VII-TGSS------DSTVRVWDVNTGEMLNTLIHHCE--AVLHLRFNNGMMVTCSKD------RSIAVWDMASPTDITLR 131 (293)
T ss_dssp EEE-EEET------TSCEEEEESSSCCEEEEECCCCS--CEEEEECCTTEEEEEETT------SCEEEEECSSSSCCEEE
T ss_pred EEE-CCCC------CCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCEEECCCC------CCEEEEECCCCCCCCCC
T ss_conf 021-0011------10110000024641001111110--000111111000001356------63068613445444212
Q ss_pred EEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEEEEEEEEECCCCEEEEECCCCCCEEEEEECCCCE
Q ss_conf 99406887758999994598725899716887749999920775677769998259839999915999279999449949
Q 000736 265 FDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQI 344 (1323)
Q Consensus 265 f~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~n~~wyLkqel~~~~~~~~~v~W~p~~~~~L~~~~~~g~~ 344 (1323)
..+ ..+...+..+.|.+ ..+.+++.|+ .|++|+..+... ...+..+......+.|++ ..+..+..+|.+
T Consensus 132 ~~~-~~~~~~v~~~~~~~--~~~~~~s~d~---~i~~~d~~~~~~--~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i 200 (293)
T d1p22a2 132 RVL-VGHRAAVNVVDFDD--KYIVSASGDR---TIKVWNTSTCEF--VRTLNGHKRGIACLQYRD---RLVVSGSSDNTI 200 (293)
T ss_dssp EEE-CCCSSCEEEEEEET--TEEEEEETTS---EEEEEETTTCCE--EEEEECCSSCEEEEEEET---TEEEEEETTSCE
T ss_pred CCC-CCCCCCCCCCEECC--CCCCCCCCCC---CEEEECCCCCCE--EEEECCCCCCCCCCCCCC---CEEEEECCCCEE
T ss_conf 100-01135431100000--2201106998---604100788838--899715544532216898---758876589989
Q ss_pred EEEEEEEEEEECCCEEEEEEECCEEEEEECCCCCCCCCCEEEEE-CCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECC
Q ss_conf 99999995210899069999199799942577679998301210-28998899999229999999999889819999789
Q 000736 345 TTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1323)
Q Consensus 345 ~~~~~~~~~~~~d~~~v~viDg~~i~lt~l~~~~vPpPm~~~~l-~~~~~V~~VaFspdg~~~~LAs~s~Dg~I~lw~~~ 423 (1323)
.+|+++.. ...... .+...+.. +++++ ..|++++.||+|++|+..
T Consensus 201 -------------------------~i~d~~~~-----~~~~~~~~~~~~v~~--~~~~~--~~l~sg~~dg~i~iwd~~ 246 (293)
T d1p22a2 201 -------------------------RLWDIECG-----ACLRVLEGHEELVRC--IRFDN--KRIVSGAYDGKIKVWDLV 246 (293)
T ss_dssp -------------------------EEEETTTC-----CEEEEECCCSSCEEE--EECCS--SEEEEEETTSCEEEEEHH
T ss_pred -------------------------EEEECCCC-----EEEEEECCCCEEEEE--CCCCC--EEEEEECCCCEEEEEECC
T ss_conf -------------------------99866556-----146652143100000--14541--079998679979999888
Q ss_pred CCCCCCCCCCCC-EEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCCEEEEE
Q ss_conf 988522235971-24742024456683799999449849999826998702899
Q 000736 424 APDMLEDLEGTE-FVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFR 476 (1323)
Q Consensus 424 ~~~~~~~~~g~~-~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~ 476 (1323)
.........+.. .... ..|.+.+..++|. +.+|++++.+ .++.+|
T Consensus 247 ~~~~~~~~~~~~~~~~~----~~H~~~V~~v~~d--~~~l~s~s~D--g~i~iW 292 (293)
T d1p22a2 247 AALDPRAPAGTLCLRTL----VEHSGRVFRLQFD--EFQIVSSSHD--DTILIW 292 (293)
T ss_dssp HHTSTTSCTTTTEEEEE----CCCSSCCCCEEEC--SSCEEECCSS--SEEEEE
T ss_pred CCCCCCCCCCCEEEEEE----CCCCCCEEEEEEC--CCEEEEEECC--CEEEEE
T ss_conf 88644456775455784----5889988999971--9999999229--989995
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=7.8e-14 Score=111.40 Aligned_cols=236 Identities=12% Similarity=0.081 Sum_probs=120.6
Q ss_pred CEEEEEE-CCCCEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEE-CCCCEEEEECCC--CE
Q ss_conf 8999993-7972899822443343331120222222223579999789999903999899996-899599996899--91
Q 000736 33 NRLFFAS-SANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT-SSGLLLLHSVDG--NA 108 (1323)
Q Consensus 33 ~~l~~~s-~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~i~~spd~~~La~as-~dG~I~lw~~~~--~~ 108 (1323)
..||+++ +++.|+.|+++ .......+.+ ..+ ++.|.+++|+|||+.|.++. .+|.|.+|+++. ..
T Consensus 4 ~~v~v~~~~~~~I~v~~~~--~~~~l~~~~~-----~~~----~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~ 72 (333)
T d1ri6a_ 4 QTVYIASPESQQIHVWNLN--HEGALTLTQV-----VDV----PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA 72 (333)
T ss_dssp EEEEEEEGGGTEEEEEEEC--TTSCEEEEEE-----EEC----SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred EEEEEECCCCCCEEEEEEC--CCCCEEEEEE-----ECC----CCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCC
T ss_conf 5999987899938999983--9997699999-----757----9988689995897999999778996999999689870
Q ss_pred EEEECE--ECCCEEEEEECCCCCEEEEEEC-CCCEEEEEECCCEEEEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCC
Q ss_conf 999100--3595999999378996999969-9649999404721012320346797400147624689985789990688
Q 000736 109 TEVVGR--VEGGVRFISPSPDGDLLGVTTG-FGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDG 185 (1323)
Q Consensus 109 ~e~vg~--~~~~I~~~awSPDG~~LA~~s~-d~tI~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~d~~v~~IsWs~DG 185 (1323)
.+..+. +...+..++|||||+.|++++. +++|.+|.............. .+......+.++|||
T Consensus 73 ~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~-------------~~~~~~~~v~~s~d~ 139 (333)
T d1ri6a_ 73 LTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV-------------EGLDGCHSANISPDN 139 (333)
T ss_dssp EEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE-------------CCCTTBCCCEECTTS
T ss_pred EEEEEECCCCCCCEEEEECCCCCEEEECCCCCCCEEEECCCCCCCEECCCCC-------------CCCCCCEEEEEEECC
T ss_conf 7985301369985499995999887420568883022001110000001003-------------778531498863010
Q ss_pred CEEEEEECCCCCCCCCCEEEEEECCCCCEEEE------ECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEECC-
Q ss_conf 57999225544558898899997999936664------15679854589993699969999628999999939999179-
Q 000736 186 KYFATLSEFCNSSKLHKRLKVWERDSGTLQAS------SELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN- 258 (1323)
Q Consensus 186 ~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t------~e~~~g~~~slawsPdG~lIAs~~~d~~~~~~~~V~l~e~n- 258 (1323)
+++. ++.. ....+++|+...+..... ..........++|+|++..+....... ....++..+
T Consensus 140 ~~~~-~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~-----~~~~v~~~~~ 208 (333)
T d1ri6a_ 140 RTLW-VPAL-----KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELN-----SSVDVWELKD 208 (333)
T ss_dssp SEEE-EEEG-----GGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTT-----TEEEEEESSC
T ss_pred EEEE-CCCC-----CCCEEEEEEECCCCCCEEEECEEEEEECCCCCCEEEEECCCEEEEEECCCC-----CCEEEEEECC
T ss_conf 1310-2565-----542056897326874100100013340388752799960201478620466-----7217885103
Q ss_pred -CEE-EEEEEEC-C----CCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEE
Q ss_conf -805-8799940-6----887758999994598725899716887749999920
Q 000736 259 -GLE-RSSFDIN-E----QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1323)
Q Consensus 259 -Gl~-~~ef~l~-~----~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~ 305 (1323)
... .....+. . ........+++++|++.+....... +++.+|...
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~--~~~~~~~~~ 260 (333)
T d1ri6a_ 209 PHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA--SLITVFSVS 260 (333)
T ss_dssp TTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT--TEEEEEEEC
T ss_pred CCCCEEEEEEEEEEECCCCCCCCCEEEEEECCCCCEEEECCCC--CEEEEEEEC
T ss_conf 5552021002234306877655312689951567205504568--827878873
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.74 E-value=3e-14 Score=114.34 Aligned_cols=295 Identities=10% Similarity=-0.038 Sum_probs=151.7
Q ss_pred CEEEEEECCCCEEEEECCCCEEE-EE--CEECCCEEEEEECCCCCEEE-EEECCCCEEEEE-ECCCEEEEEEECCCCCCC
Q ss_conf 98999968995999968999199-91--00359599999937899699-996996499994-047210123203467974
Q 000736 88 EALIVGTSSGLLLLHSVDGNATE-VV--GRVEGGVRFISPSPDGDLLG-VTTGFGQILVMT-HDWDLLYENPLEELAEGF 162 (1323)
Q Consensus 88 ~~La~as~dG~I~lw~~~~~~~e-~v--g~~~~~I~~~awSPDG~~LA-~~s~d~tI~l~t-~~~d~~~e~~l~~~~~~~ 162 (1323)
+.+++++.||+|.+||..+.++. .+ +.+...+.+++|||||++|. +++.++.|.+|+ ..+..+......... .
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~--~ 79 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE--E 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT--E
T ss_pred EEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCC--C
T ss_conf 69999767998999999999499999877889982379999998999999789994999999999298887247773--1
Q ss_pred EECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCC------CCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCE
Q ss_conf 00147624689985789990688579992255445------588988999979999366641567985458999369996
Q 000736 163 DVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNS------SKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGAN 236 (1323)
Q Consensus 163 ~Vs~tqf~~~d~~v~~IsWs~DG~~lAtvss~d~~------~~~d~~irVWd~~~G~l~~t~e~~~g~~~slawsPdG~l 236 (1323)
. ......++|+|||++++ ++..+.. ...+..+.+|+..++....+... ......++|+|+|+.
T Consensus 80 ~---------~~~~~~v~~s~dg~~l~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~ 148 (337)
T d1pbyb_ 80 R---------VKSLFGAALSPDGKTLA-IYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSK 148 (337)
T ss_dssp E---------EECTTCEEECTTSSEEE-EEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSC
T ss_pred C---------CCCEEEEEECCCCCEEE-EEECCCCCEEEECCCCCCCEEECCCCCCEEEEECCC-CCCCEEEEECCCCCE
T ss_conf 2---------54025489868775799-950477620342034555212035667759884145-687218998688888
Q ss_pred EEEEECCCCCCCCCEEEEEECC-CEEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEEEEEE
Q ss_conf 9999628999999939999179-805879994068877589999945987258997168877499999207756777699
Q 000736 237 IAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEI 315 (1323)
Q Consensus 237 IAs~~~d~~~~~~~~V~l~e~n-Gl~~~ef~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~n~~wyLkqel 315 (1323)
+++++.+ +.+|+.. +..... ++.. .......++|++..+....... .....+...
T Consensus 149 l~~~~~~--------~~~~d~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------- 204 (337)
T d1pbyb_ 149 LYGLGRD--------LHVMDPEAGTLVED--KPIQ--SWEAETYAQPDVLAVWNQHESS--GVMATPFYT---------- 204 (337)
T ss_dssp EEEESSS--------EEEEETTTTEEEEE--ECST--TTTTTTBCCCBCCCCCCCCTTT--TEEEEEEEE----------
T ss_pred EEEECCC--------CCEEEEECCCEEEE--EECC--CCCCCCEECCCCCEEECCCCCC--CEEEEEEEE----------
T ss_conf 9997177--------50566303727888--6147--7543311357763140146653--124663244----------
Q ss_pred EEECCCCEEEEECCCCCCEEEEEECCCCEEEEEEEEEEEECCCEEEEEEECCEEEEEECCCCCCCCCCEEEEECCCCCEE
Q ss_conf 98259839999915999279999449949999999952108990699991997999425776799983012102899889
Q 000736 316 RYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVT 395 (1323)
Q Consensus 316 ~~~~~~~~~v~W~p~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~i~lt~l~~~~vPpPm~~~~l~~~~~V~ 395 (1323)
..|...... . +.. ...+.++|.. ...+ .......+...+.
T Consensus 205 ---------~~~~~~~~~---~----~~~-------------~~~~~~~~~~--------~~~~---~~~~~~~~~~~~~ 244 (337)
T d1pbyb_ 205 ---------ARKDIDPAD---P----TAY-------------RTGLLTMDLE--------TGEM---AMREVRIMDVFYF 244 (337)
T ss_dssp ---------EBTTSCTTS---G----GGE-------------EEEEEEEETT--------TCCE---EEEEEEECSSCEE
T ss_pred ---------EEECCCEEE---E----CCC-------------CCCEEEEECC--------CCCE---EEEEECCCCCCEE
T ss_conf ---------410366045---4----036-------------7617999868--------8858---8898328875058
Q ss_pred EEEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCCEEEE
Q ss_conf 99992299999999998898199997899885222359712474202445668379999944984999982699870289
Q 000736 396 EMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYF 475 (1323)
Q Consensus 396 ~VaFspdg~~~~LAs~s~Dg~I~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~ 475 (1323)
..+++|++ ..+++. ++.+.+|+..+...... + .....+..++|+|||..|+++..+ +++.+
T Consensus 245 ~~~~~~~~--~~~~~~--~~~i~v~d~~~~~~~~~-----~--------~~~~~~~~~~~s~dG~~l~v~~~~--~~i~v 305 (337)
T d1pbyb_ 245 STAVNPAK--TRAFGA--YNVLESFDLEKNASIKR-----V--------PLPHSYYSVNVSTDGSTVWLGGAL--GDLAA 305 (337)
T ss_dssp EEEECTTS--SEEEEE--ESEEEEEETTTTEEEEE-----E--------ECSSCCCEEEECTTSCEEEEESBS--SEEEE
T ss_pred EEEECCCC--EEEEEC--CCCEEEEECCCCCEEEE-----E--------CCCCCEEEEEECCCCCEEEEEECC--CCEEE
T ss_conf 88742661--399973--55289998988969999-----7--------489988999997899999999499--92999
Q ss_pred EEE
Q ss_conf 983
Q 000736 476 RGA 478 (1323)
Q Consensus 476 ~~~ 478 (1323)
|..
T Consensus 306 ~D~ 308 (337)
T d1pbyb_ 306 YDA 308 (337)
T ss_dssp EET
T ss_pred EEC
T ss_conf 999
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.73 E-value=4.5e-13 Score=105.95 Aligned_cols=140 Identities=13% Similarity=0.101 Sum_probs=63.3
Q ss_pred EEEEEECCCCEEEEEECCCCEEEEECCCCEEE-EECE-----ECCCEEEEEECCCCCEEEEEECC---------CCEEEE
Q ss_conf 99999039998999968995999968999199-9100-----35959999993789969999699---------649999
Q 000736 79 TAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGR-----VEGGVRFISPSPDGDLLGVTTGF---------GQILVM 143 (1323)
Q Consensus 79 ~~i~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~-----~~~~I~~~awSPDG~~LA~~s~d---------~tI~l~ 143 (1323)
.++.|++|++.+. ..+|+|.+|+..+++.. ++.. +..+|.+.+|||||+.||+++.. +.+.+|
T Consensus 20 ~~~~W~~d~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~ 97 (470)
T d2bgra1 20 YSLRWISDHEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY 97 (470)
T ss_dssp CCCEECSSSEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred CCCEECCCCEEEE--ECCCCEEEEECCCCCEEEEECHHHHHHCCCCCCEEEECCCCCEEEEEECCCCEEEECCCCEEEEE
T ss_conf 5789689997999--75994999988999789997015644316765405998988979999777100010467349999
Q ss_pred EECCCEEEEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEC-C--
Q ss_conf 4047210123203467974001476246899857899906885799922554455889889999799993666415-6--
Q 000736 144 THDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-L-- 220 (1323)
Q Consensus 144 t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~d~~v~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e-~-- 220 (1323)
+. ..+. +. ++..+.+.+..++|||||+++|++. ++.+.+|+..+|....... +
T Consensus 98 d~----~~~~-~~-----------~l~~~~~~~~~~~~SPDG~~ia~~~--------~~~l~~~~~~~g~~~~~t~~~~~ 153 (470)
T d2bgra1 98 DL----NKRQ-LI-----------TEERIPNNTQWVTWSPVGHKLAYVW--------NNDIYVKIEPNLPSYRITWTGKE 153 (470)
T ss_dssp ET----TTTE-EC-----------CSSCCCTTEEEEEECSSTTCEEEEE--------TTEEEEESSTTSCCEECCSCCBT
T ss_pred EC----CCCC-CC-----------CCCCCCCCCCCCCCCCCCCEEEEEE--------CCCCEEEECCCCCEEEEEECCCC
T ss_conf 89----8885-13-----------1246874231010146764135751--------46413798899946532101477
Q ss_pred ---------------CCCCEEEEEECCCCCEEEEEECCC
Q ss_conf ---------------798545899936999699996289
Q 000736 221 ---------------KAFMGAVLEWMPSGANIAAVYDRK 244 (1323)
Q Consensus 221 ---------------~~g~~~slawsPdG~lIAs~~~d~ 244 (1323)
..+....+.|||||+.||....+.
T Consensus 154 ~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~ 192 (470)
T d2bgra1 154 DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFND 192 (470)
T ss_dssp TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEEC
T ss_pred CCCCCCCCCEEEEEEECCCCCCCEECCCCCCCCEEEECC
T ss_conf 740535432011210047765307999987220268637
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.72 E-value=1.8e-12 Score=101.64 Aligned_cols=302 Identities=12% Similarity=-0.044 Sum_probs=154.9
Q ss_pred CEECCCEEEEEECCCCCEEEEEE-----CCCCEEEEE-ECCCEEEEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCCC
Q ss_conf 00359599999937899699996-----996499994-047210123203467974001476246899857899906885
Q 000736 113 GRVEGGVRFISPSPDGDLLGVTT-----GFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGK 186 (1323)
Q Consensus 113 g~~~~~I~~~awSPDG~~LA~~s-----~d~tI~l~t-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~d~~v~~IsWs~DG~ 186 (1323)
+.+++.+.+.+|||||+.+++.. ..+.|.+|+ ..+.++...... ....+.|+|||+
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~------------------~~~~~a~SpDG~ 78 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG------------------FLPNPVAAHSGS 78 (373)
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECC------------------CCCCEEECCCCC
T ss_conf 56789865630189997899973422578765999989999799999579------------------886079868999
Q ss_pred EEEEEECCCCC----CCCCCEEEEEECCCCCEEEEECCCCCC-------EEEEEECCCCCEEEEEECCCCCCCCCEEEEE
Q ss_conf 79992255445----588988999979999366641567985-------4589993699969999628999999939999
Q 000736 187 YFATLSEFCNS----SKLHKRLKVWERDSGTLQASSELKAFM-------GAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1323)
Q Consensus 187 ~lAtvss~d~~----~~~d~~irVWd~~~G~l~~t~e~~~g~-------~~slawsPdG~lIAs~~~d~~~~~~~~V~l~ 255 (1323)
+++ ++..... +..++.|+|||..++++......+... ...+.|+|+|+.++....+. ...+.+|
T Consensus 79 ~l~-va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~----~~~~~~~ 153 (373)
T d2madh_ 79 EFA-LASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA----GPAVGLV 153 (373)
T ss_pred EEE-EEEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEECCCCCCEEEEECCCCEEEEEECC----CCCEEEE
T ss_conf 899-99605775321245318999977789388897268851368516897089985899379999869----8746776
Q ss_pred ECCCEEEEEEEECCCCCCCEEEEEECCCCCEE-EEEECCCCCCEEEEEEEECCEEEEEEEEEEEC--CCC--EEEEECCC
Q ss_conf 17980587999406887758999994598725-89971688774999992077567776999825--983--99999159
Q 000736 256 ERNGLERSSFDINEQIDSTVELLKWNCMSDLL-AAVVRFEEYDSVKICFFSNNHWYLKYEIRYLR--RDG--IRFMWHPT 330 (1323)
Q Consensus 256 e~nGl~~~ef~l~~~~~~~V~~laWSpDg~~L-A~~~~d~~~~~VqlW~~~n~~wyLkqel~~~~--~~~--~~v~W~p~ 330 (1323)
+........ .......+.++|+|+.+ ++.+.|+ .+.+|+..+..-.......... ... ....++++
T Consensus 154 ~~~~~~~~~------~~~~~~~~~~s~~g~~~~v~~~~dg---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (373)
T d2madh_ 154 VQGGSSDDQ------LLSSPTCYHIHPGAPSTFYLLCAQG---GLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKS 224 (373)
T ss_pred ECCCCEEEE------EECCCEEEEEECCCCCEEEEECCCC---EEEEEECCCCEEEEEEEEECCCCCCCCEEEEEEECCC
T ss_conf 236872899------8245206999628991999994799---3999974774266788630036675304345887899
Q ss_pred CCCEEEEEECCCCEEEEEEEEEEEECCCEEEEEEECCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEECCCCC-----
Q ss_conf 992799994499499999999521089906999919979994257767999830121028998899999229999-----
Q 000736 331 KPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSK----- 405 (1323)
Q Consensus 331 ~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~i~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFspdg~~----- 405 (1323)
+. +.....++.+. .|+...........++......... ...+.....+++++++..
T Consensus 225 ~~--~~~~~~~~~v~----~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~d~~~~~~~~ 285 (373)
T d2madh_ 225 GR--IVWPVYSGKIL----QADISAAGATNKAPIDALSGGRKAD-------------TWRPGGWQQVAYLKSSDGIYLLT 285 (373)
T ss_pred CE--EEEECCCCEEE----EEECCCCEEEEEEEECCCCCCEEEE-------------EECCCCCEEEEEECCCCEEEEEC
T ss_conf 42--99925896599----9976899078977630564757866-------------41367413357714997599954
Q ss_pred ---CEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCCEEEEEEE
Q ss_conf ---9999998898199997899885222359712474202445668379999944984999982699870289983
Q 000736 406 ---NCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1323)
Q Consensus 406 ---~~LAs~s~Dg~I~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1323)
..+++...++.+.+|+..+......+ .....+..++|+|||+.+.+......+.+.+|..
T Consensus 286 ~~~~~~~~~~~~~~v~~~d~~t~~~~~~~-------------~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~ 348 (373)
T d2madh_ 286 SEQSAWKLHAAAKEVTSVTGLVGQTSSQI-------------SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDA 348 (373)
T ss_pred CCCCEEEEECCCCEEEEEECCCCCEEEEE-------------CCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEC
T ss_conf 88824786258986999989999698986-------------6899825899998999899999679992999999
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.71 E-value=6.6e-15 Score=119.07 Aligned_cols=300 Identities=9% Similarity=0.035 Sum_probs=166.0
Q ss_pred EEECCCCEEEEEE-----CCCCEEEEECCCCEE-EEECEECCCEEEEEECCCCCEEEEEEC----------CCCEEEEE-
Q ss_conf 9903999899996-----899599996899919-991003595999999378996999969----------96499994-
Q 000736 82 DYLMEKEALIVGT-----SSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTG----------FGQILVMT- 144 (1323)
Q Consensus 82 ~~spd~~~La~as-----~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~----------d~tI~l~t- 144 (1323)
+.+||++.+.+.. .+++|.+||..++++ ..+.. +.+..++|||||++|++++. ++.|.+|+
T Consensus 8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~--g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~ 85 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG--GFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 85 (355)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE--CSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred EECCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEEC--CCCCCEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEEC
T ss_conf 658999999998266477767199999999949999989--999856994899999999677764201589998999999
Q ss_pred ECCCEEEEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCC--
Q ss_conf 047210123203467974001476246899857899906885799922554455889889999799993666415679--
Q 000736 145 HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA-- 222 (1323)
Q Consensus 145 ~~~d~~~e~~l~~~~~~~~Vs~tqf~~~d~~v~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~-- 222 (1323)
..+.+..+....... ...+ ......++|++||+++. +.+. +.+..+.+|+..+++...+.....
T Consensus 86 ~t~~~~~~~~~~~~~-~~~~--------~~~~~~~~~s~dg~~~~-v~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (355)
T d2bbkh_ 86 VTLLPTADIELPDAP-RFLV--------GTYPWMTSLTPDGKTLL-FYQF----SPAPAVGVVDLEGKAFKRMLDVPDCY 151 (355)
T ss_dssp TTCCEEEEEEETTCC-CCCB--------SCCGGGEEECTTSSEEE-EEEC----SSSCEEEEEETTTTEEEEEEECCSEE
T ss_pred CCCCEEEEEECCCCC-EEEC--------CCCCCEEEEECCCCEEE-EECC----CCCCEEEEEECCCCCEEEEEECCCCC
T ss_conf 999798898058864-0311--------79873499933887157-7327----98820454305788376677058740
Q ss_pred -----CCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCC
Q ss_conf -----854589993699969999628999999939999179805879994068877589999945987258997168877
Q 000736 223 -----FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYD 297 (1323)
Q Consensus 223 -----g~~~slawsPdG~lIAs~~~d~~~~~~~~V~l~e~nGl~~~ef~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~ 297 (1323)
+....++++|+|..+.....+. ..+..+..... .......+....|++++..++....++
T Consensus 152 ~~~~~~~~~~~~~~~dg~~~~v~~~~~-----~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 216 (355)
T d2bbkh_ 152 HIFPTAPDTFFMHCRDGSLAKVAFGTE-----GTPEITHTEVF-------HPEDEFLINHPAYSQKAGRLVWPTYTG--- 216 (355)
T ss_dssp EEEEEETTEEEEEETTSCEEEEECCSS-----SCCEEEECCCC-------SCTTSCBCSCCEEETTTTEEEEEBTTS---
T ss_pred EEEECCCCCEEEECCCCCEEEEEECCC-----CEEEEEECCCC-------CCEECCEEEECCCCCCCCEEEEECCCC---
T ss_conf 473069963699938999899983478-----73799962433-------300011061021538997388746998---
Q ss_pred EEEEEEEECCEEEEEEEEEEECCCCEEEEECCCCCCEEEEEECCCCEEEEEEEEEEE---ECCCEEEEEEECCEEEEEEC
Q ss_conf 499999207756777699982598399999159992799994499499999999521---08990699991997999425
Q 000736 298 SVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTA---VMENSTALVIDGSKILVTPL 374 (1323)
Q Consensus 298 ~VqlW~~~n~~wyLkqel~~~~~~~~~v~W~p~~~~~L~~~~~~g~~~~~~~~~~~~---~~d~~~v~viDg~~i~lt~l 374 (1323)
.+.+|+.....-........+........|.|.+.. ......++............ ......+.++| .
T Consensus 217 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d--------~ 287 (355)
T d2bbkh_ 217 KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQ-QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD--------A 287 (355)
T ss_dssp EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSS-CEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEE--------T
T ss_pred EEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCEE-EEEEECCCCEEEEEECCCCCEEECCCCCEEEEEE--------C
T ss_conf 299996589907998445784412685433035108-9998079976788740687126517997599986--------7
Q ss_pred CCCCCCCCCEEEEECCCCCEEEEEEECCCCCC--EEEEEECCCCEEEEECCCCCCC
Q ss_conf 77679998301210289988999992299999--9999988981999978998852
Q 000736 375 SLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKN--CLAAILSDGCLCVVDLPAPDML 428 (1323)
Q Consensus 375 ~~~~vPpPm~~~~l~~~~~V~~VaFspdg~~~--~LAs~s~Dg~I~lw~~~~~~~~ 428 (1323)
... ....++.+...+.+++||||| + .+++...|++|.+|+..+....
T Consensus 288 ~t~-----~~~~~~~~~~~~~~~a~spDG--~~~l~v~~~~d~~i~v~D~~tg~~~ 336 (355)
T d2bbkh_ 288 KTG-----ERLAKFEMGHEIDSINVSQDE--KPLLYALSTGDKTLYIHDAESGEEL 336 (355)
T ss_dssp TTC-----CEEEEEEEEEEECEEEECCSS--SCEEEEEETTTTEEEEEETTTCCEE
T ss_pred CCC-----CEEEEECCCCCEEEEEECCCC--CEEEEEEECCCCEEEEEECCCCCEE
T ss_conf 888-----498996689987799992899--9699999789998999999999899
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.69 E-value=3.3e-14 Score=114.05 Aligned_cols=247 Identities=13% Similarity=0.148 Sum_probs=131.9
Q ss_pred EEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCEEECCCCCCCCCCCCC-CCCEEEEEEECCCCEEEEEEC--------
Q ss_conf 79662589899999379728998224433433311202222222235799-997899999039998999968--------
Q 000736 25 FSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEP-GDSITAFDYLMEKEALIVGTS-------- 95 (1323)
Q Consensus 25 ~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~V~~i~~spd~~~La~as~-------- 95 (1323)
...|-.|+..+| .+++.|+.|+. .+++.. .. +..+.+.. ...|.++.|||||+.|++++.
T Consensus 21 ~~~W~~d~~~~~--~~~~~~~~~~~--~t~~~~--~~-----~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s 89 (470)
T d2bgra1 21 SLRWISDHEYLY--KQENNILVFNA--EYGNSS--VF-----LENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHS 89 (470)
T ss_dssp CCEECSSSEEEE--ESSSCEEEEET--TTCCEE--EE-----ECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSC
T ss_pred CCEECCCCEEEE--ECCCCEEEEEC--CCCCEE--EE-----ECHHHHHHCCCCCCEEEECCCCCEEEEEECCCCEEEEC
T ss_conf 789689997999--75994999988--999789--99-----70156443167654059989889799997771000104
Q ss_pred -CCCEEEEECCCCEEEEECEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCEEEEEEECCCC-CCCEEC-CCCC---
Q ss_conf -9959999689991999100359599999937899699996996499994047210123203467-974001-4762---
Q 000736 96 -SGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELA-EGFDVH-EPEL--- 169 (1323)
Q Consensus 96 -dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tI~l~t~~~d~~~e~~l~~~~-~~~~Vs-~tqf--- 169 (1323)
+|++.+|++.++++..+..+.+++..++|||||+.+|.+.. +++.+|....... ..+.... .....+ ...+
T Consensus 90 ~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~~-~~l~~~~~~~g~~--~~~t~~~~~~~~~~g~~d~~~~ 166 (470)
T d2bgra1 90 YTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWN-NDIYVKIEPNLPS--YRITWTGKEDIIYNGITDWVYE 166 (470)
T ss_dssp EEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEET-TEEEEESSTTSCC--EECCSCCBTTTEEESBCCHHHH
T ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC-CCCEEEECCCCCE--EEEEECCCCCCCCCCCCCEEEE
T ss_conf 673499998988851312468742310101467641357514-6413798899946--5321014777405354320112
Q ss_pred CCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCC
Q ss_conf 46899857899906885799922554455889889999799993666415679854589993699969999628999999
Q 000736 170 SSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKC 249 (1323)
Q Consensus 170 ~~~d~~v~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~g~~~slawsPdG~lIAs~~~d~~~~~~ 249 (1323)
....+....+.|||||+++| ....|. +.-+.+.+....... ........+.+...|...+ .
T Consensus 167 ~~~~~~~~~~~wSPDGk~ia-~~~~d~--~~v~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~----------~ 227 (470)
T d2bgra1 167 EEVFSAYSALWWSPNGTFLA-YAQFND--TEVPLIEYSFYSDES------LQYPKTVRVPYPKAGAVNP----------T 227 (470)
T ss_dssp HHTSSSSBCEEECTTSSEEE-EEEEEC--TTCCEEEEEECCSTT------CSSCEEEEEECCBTTSCCC----------E
T ss_pred EEECCCCCCCEECCCCCCCC-EEEECC--CCCCEEEEEEECCCC------CCCCEEEEECCCCCCCCCC----------C
T ss_conf 10047765307999987220-268637--767069987660477------7887135403665454688----------6
Q ss_pred CEEEEEECCCEEE------EEEEEC---CCCCCCEEEEEECCCCCEEEEEECCCC-CCEEEEEEE
Q ss_conf 9399991798058------799940---688775899999459872589971688-774999992
Q 000736 250 PSIVFYERNGLER------SSFDIN---EQIDSTVELLKWNCMSDLLAAVVRFEE-YDSVKICFF 304 (1323)
Q Consensus 250 ~~V~l~e~nGl~~------~ef~l~---~~~~~~V~~laWSpDg~~LA~~~~d~~-~~~VqlW~~ 304 (1323)
..+.+|+..+... .....+ ...+..+..+.|++++.+++....... ...+.+|..
T Consensus 228 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~ 292 (470)
T d2bgra1 228 VKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDY 292 (470)
T ss_dssp EEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEE
T ss_pred CEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEEEE
T ss_conf 25799998886145520332247863347898667788876878334787304688159999996
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.68 E-value=8.2e-14 Score=111.25 Aligned_cols=305 Identities=9% Similarity=-0.088 Sum_probs=162.2
Q ss_pred EEECCCCCEEEEEECCCCEEEEEE-CCCEEEEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCC
Q ss_conf 999378996999969964999940-4721012320346797400147624689985789990688579992255445588
Q 000736 122 ISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKL 200 (1323)
Q Consensus 122 ~awSPDG~~LA~~s~d~tI~l~t~-~~d~~~e~~l~~~~~~~~Vs~tqf~~~d~~v~~IsWs~DG~~lAtvss~d~~~~~ 200 (1323)
.+|||+|++|++++.+++|.+|+. ...++....+.. ......++|+|||+++. ++. ..
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~---------------~~~p~~l~~spDG~~l~-v~~-----~~ 60 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD---------------KFGPGTAMMAPDNRTAY-VLN-----NH 60 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSS---------------CCSSCEEEECTTSSEEE-EEE-----TT
T ss_pred CCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCC---------------CCCCCEEEECCCCCEEE-EEE-----CC
T ss_conf 5588999699998699979999999998999999489---------------99704599978989999-997-----89
Q ss_pred CCEEEEEECCCCCEEEEECCCC------CCEEEEEECCCCCEEEEEECCCC------CCCCCEEEEEECC-CEEEEEEEE
Q ss_conf 9889999799993666415679------85458999369996999962899------9999939999179-805879994
Q 000736 201 HKRLKVWERDSGTLQASSELKA------FMGAVLEWMPSGANIAAVYDRKS------ENKCPSIVFYERN-GLERSSFDI 267 (1323)
Q Consensus 201 d~~irVWd~~~G~l~~t~e~~~------g~~~slawsPdG~lIAs~~~d~~------~~~~~~V~l~e~n-Gl~~~ef~l 267 (1323)
++.|++||..+|+...+..... .....++|+|||++++++..+.. ......+..|+.. |.....+..
T Consensus 61 ~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 140 (346)
T d1jmxb_ 61 YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT 140 (346)
T ss_dssp TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE
T ss_pred CCCEEEEECCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCEEEEEEEE
T ss_conf 99399996756713123103654345477417999905888899970577521565146762489985256326568873
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEEEEEEEEECCCCEEEEECCCCCCEEEEEECCCCEEEE
Q ss_conf 06887758999994598725899716887749999920775677769998259839999915999279999449949999
Q 000736 268 NEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTY 347 (1323)
Q Consensus 268 ~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~n~~wyLkqel~~~~~~~~~v~W~p~~~~~L~~~~~~g~~~~~ 347 (1323)
. .....+..+.+++|+.+++.. . .+.+|+..+.... ..+..+ .....+.|+|++.........++.+...
T Consensus 141 ~-~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (346)
T d1jmxb_ 141 F-PMPRQVYLMRAADDGSLYVAG---P---DIYKMDVKTGKYT--VALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSML 210 (346)
T ss_dssp E-ECCSSCCCEEECTTSCEEEES---S---SEEEECTTTCCEE--EEECST-TCCCTTBCCCBCCCCCCCCCTTCEEEEE
T ss_pred E-ECCCCEEEEEECCCCEEEEEC---C---CCEEEECCCCCEE--EEEECC-CCCCCEEEECCCCEEEEEECCCCCEEEE
T ss_conf 1-024743999952787899847---9---6269980699789--999648-9866237712552899986499816765
Q ss_pred EEEEEEEECCCEEEEEEECCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCC
Q ss_conf 99995210899069999199799942577679998301210289988999992299999999998898199997899885
Q 000736 348 NFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDM 427 (1323)
Q Consensus 348 ~~~~~~~~~d~~~v~viDg~~i~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFspdg~~~~LAs~s~Dg~I~lw~~~~~~~ 427 (1323)
.....................+.++++.... ........+...+..+.+++++ ..++... ++.+.+|+..+...
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~v~v~d~~~~~~ 284 (346)
T d1jmxb_ 211 YTIARFKDDKQDPATADLLYGYLSVDLKTGK---THTQEFADLTELYFTGLRSPKD--PNQIYGV-LNRLAKYDLKQRKL 284 (346)
T ss_dssp EEEEEC-------CCCEEEEEEEEEETTTCC---EEEEEEEECSSCEEEEEECSSC--TTEEEEE-ESEEEEEETTTTEE
T ss_pred EEEEEECCCCEEEEECCCCCEEEEEECCCCC---EEEEEEECCCCEEEEEEEECCC--CEEEEEC-CCEEEEEECCCCCE
T ss_conf 1231112673257540478349999777883---6878763156606888971799--7899942-98389998999939
Q ss_pred CCCCCCCCEEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCCEEEEEEE
Q ss_conf 222359712474202445668379999944984999982699870289983
Q 000736 428 LEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1323)
Q Consensus 428 ~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1323)
... +. ....+.+++|+||++.++++..+ +.+.+|+.
T Consensus 285 ~~~-----~~--------~~~~~~~va~s~DG~~l~v~~~d--~~v~v~D~ 320 (346)
T d1jmxb_ 285 IKA-----AN--------LDHTYYCVAFDKKGDKLYLGGTF--NDLAVFNP 320 (346)
T ss_dssp EEE-----EE--------CSSCCCEEEECSSSSCEEEESBS--SEEEEEET
T ss_pred EEE-----EC--------CCCCEEEEEECCCCCEEEEEECC--CCEEEEEC
T ss_conf 999-----74--------99977899996899999999489--92999999
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=2.1e-10 Score=86.88 Aligned_cols=223 Identities=12% Similarity=0.032 Sum_probs=132.6
Q ss_pred CCEEEEEEECCCCEEEEEECCC---CEEEEECCCCEEEEECEECCCEEEEEECCCCCEEEEEECCC-CEEEEEECCCEEE
Q ss_conf 9789999903999899996899---59999689991999100359599999937899699996996-4999940472101
Q 000736 76 DSITAFDYLMEKEALIVGTSSG---LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFG-QILVMTHDWDLLY 151 (1323)
Q Consensus 76 ~~V~~i~~spd~~~La~as~dG---~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~-tI~l~t~~~d~~~ 151 (1323)
..+.+-.|||||+.||.....+ .+.+.+..++..+.+..+.+.+.+..|||||+.++...... ...++........
T Consensus 39 ~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~ 118 (269)
T d2hqsa1 39 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ 118 (269)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred CCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCEEEEEEEECCCCCCEECCCCCEEEEEEECCCCCCEEECCCCCCC
T ss_conf 84260388789998999981526751344311367506776420245430244889864676402786410000222122
Q ss_pred EEEECCCCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEEC
Q ss_conf 23203467974001476246899857899906885799922554455889889999799993666415679854589993
Q 000736 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM 231 (1323)
Q Consensus 152 e~~l~~~~~~~~Vs~tqf~~~d~~v~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~g~~~slaws 231 (1323)
..... ..........|+++++.+..++.. .+...+.+.+...+.. .......+......|+
T Consensus 119 ~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~s 179 (269)
T d2hqsa1 119 IRQVT--------------DGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAP-QRITWEGSQNQDADVS 179 (269)
T ss_dssp EEECC--------------CCSSCEEEEEECTTSSEEEEEECT----TSSCEEEEEETTSSCC-EECCCSSSEEEEEEEC
T ss_pred CEEEE--------------ECCCCCCCCCCCCCCCCCEECCCC----CCCCEEEEEECCCCCC-EEEECCCCCCCCCCCC
T ss_conf 00001--------------014421145434554433000012----6874386542133100-0100012222343223
Q ss_pred CCCCEEEEEECCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEE
Q ss_conf 69996999962899999993999917980587999406887758999994598725899716887749999920775677
Q 000736 232 PSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYL 311 (1323)
Q Consensus 232 PdG~lIAs~~~d~~~~~~~~V~l~e~nGl~~~ef~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~n~~wyL 311 (1323)
|+|+.|+....+.. ...+.+.+..+.... .+. .........|||||+.||..+..+....+.+|+.....
T Consensus 180 pdg~~~~~~~~~~~---~~~i~~~~~~~~~~~--~~~--~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~--- 249 (269)
T d2hqsa1 180 SDGKFMVMVSSNGG---QQHIAKQDLATGGVQ--VLS--STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF--- 249 (269)
T ss_dssp TTSSEEEEEEECSS---CEEEEEEETTTCCEE--ECC--CSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC---
T ss_pred CCCCEEEEEEECCC---CEEEEEEECCCCCCE--EEE--CCCCCCCEEECCCCCEEEEEECCCCCCEEEEEECCCCC---
T ss_conf 45430577860588---012567603564405--850--68654455898999999999817998479999999997---
Q ss_pred EEEEEEECCCC--EEEEECC
Q ss_conf 76999825983--9999915
Q 000736 312 KYEIRYLRRDG--IRFMWHP 329 (1323)
Q Consensus 312 kqel~~~~~~~--~~v~W~p 329 (1323)
........+ ....|+|
T Consensus 250 --~~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 250 --KARLPATDGQVKFPAWSP 267 (269)
T ss_dssp --EEECCCSSSEEEEEEECC
T ss_pred --EEEEECCCCCEEEEEECC
T ss_conf --799857998588378289
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.57 E-value=3.9e-12 Score=99.31 Aligned_cols=123 Identities=8% Similarity=-0.045 Sum_probs=55.7
Q ss_pred EEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCC----CCCCCEEEEE
Q ss_conf 990688579992255445588988999979999366641567985458999369996999962899----9999939999
Q 000736 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKS----ENKCPSIVFY 255 (1323)
Q Consensus 180 sWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~g~~~slawsPdG~lIAs~~~d~~----~~~~~~V~l~ 255 (1323)
+.+|||+.+. ++..... .....+.|||..+|++..+... +....++|||||++|++++.... ......|.+|
T Consensus 8 a~spdg~~~~-v~~~~~~-~~~~~v~v~D~~tg~~~~~~~~--g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~ 83 (355)
T d2bbkh_ 8 APAPDARRVY-VNDPAHF-AAVTQQFVIDGEAGRVIGMIDG--GFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVF 83 (355)
T ss_dssp CCCCCTTEEE-EEECGGG-CSSEEEEEEETTTTEEEEEEEE--CSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EECCCCCEEE-EEECCCC-CCCCEEEEEECCCCCEEEEEEC--CCCCCEEECCCCCEEEEEECCCCCCCCCCCCCEEEEE
T ss_conf 6589999999-9826647-7767199999999949999989--9998569948999999996777642015899989999
Q ss_pred ECC-CEEEEEEEECCCC----CCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECC
Q ss_conf 179-8058799940688----775899999459872589971688774999992077
Q 000736 256 ERN-GLERSSFDINEQI----DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1323)
Q Consensus 256 e~n-Gl~~~ef~l~~~~----~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~n~ 307 (1323)
+.. |....++.++... ......++|+|||..+.++.... ...+.+|+....
T Consensus 84 D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~-~~~~~~~~~~~~ 139 (355)
T d2bbkh_ 84 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP-APAVGVVDLEGK 139 (355)
T ss_dssp CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS-SCEEEEEETTTT
T ss_pred ECCCCCEEEEEECCCCCEEECCCCCCEEEEECCCCEEEEECCCC-CCEEEEEECCCC
T ss_conf 99999798898058864031179873499933887157732798-820454305788
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.44 E-value=4e-09 Score=77.77 Aligned_cols=57 Identities=9% Similarity=0.047 Sum_probs=28.4
Q ss_pred CEEEEEEECCCCEEEEEECCCCEEEEECC--CCEEEEEC-EECCCEEEEEECCCCCEEEEE
Q ss_conf 78999990399989999689959999689--99199910-035959999993789969999
Q 000736 77 SITAFDYLMEKEALIVGTSSGLLLLHSVD--GNATEVVG-RVEGGVRFISPSPDGDLLGVT 134 (1323)
Q Consensus 77 ~V~~i~~spd~~~La~as~dG~I~lw~~~--~~~~e~vg-~~~~~I~~~awSPDG~~LA~~ 134 (1323)
.+..|+|+||++.|.++. .|.+..|.++ ++...... ...++...++++|||+.+.++
T Consensus 41 ~~s~la~s~d~~~ly~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~ 100 (365)
T d1jofa_ 41 PISWMTFDHERKNIYGAA-MKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLL 100 (365)
T ss_dssp CCSEEEECTTSSEEEEEE-BTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEE
T ss_pred CCCEEEECCCCCEEEEEE-CCCEEEEEEECCCCEEEEEEECCCCCCEEEEECCCCCEEEEE
T ss_conf 977799948989999993-894789999089976987641289986789987899879999
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.39 E-value=7.2e-12 Score=97.36 Aligned_cols=302 Identities=7% Similarity=-0.103 Sum_probs=144.0
Q ss_pred CCEEEEEEECCCCEEEEE---ECCCCEE--EEECCCCEEE-EECEECCCEEEEEECCCCCEEEEEEC----------CCC
Q ss_conf 978999990399989999---6899599--9968999199-91003595999999378996999969----------964
Q 000736 76 DSITAFDYLMEKEALIVG---TSSGLLL--LHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTG----------FGQ 139 (1323)
Q Consensus 76 ~~V~~i~~spd~~~La~a---s~dG~I~--lw~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~----------d~t 139 (1323)
+....++..++++...+. ..+|+.. +|+..++++. .+.. +....++|||||+.|++++. |++
T Consensus 20 g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~--~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~ 97 (368)
T d1mdah_ 20 GSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLG--AFLSLAVAGHSGSDFALASTSFARSAKGKRTDY 97 (368)
T ss_dssp CCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE--CTTCEEEECTTSSCEEEEEEEETTTTSSSEEEE
T ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEEC--CCCCCCEECCCCCEEEEECCCCCCCCCCCCCCE
T ss_conf 986664558987612697204578862179970899837788857--877751398999889997556764010356786
Q ss_pred EEEEE-ECCCEEEEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEE
Q ss_conf 99994-04721012320346797400147624689985789990688579992255445588988999979999366641
Q 000736 140 ILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS 218 (1323)
Q Consensus 140 I~l~t-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~d~~v~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~ 218 (1323)
|.+|+ ..+.+..+..++.... ..+ ......++|+|||++++ ++.. .++.+.+||..+++.....
T Consensus 98 v~v~D~~t~~~~~~i~~p~~~~-~~~--------g~~p~~~a~SpDGk~l~-va~~-----~~~~v~~~d~~~~~~~~~~ 162 (368)
T d1mdah_ 98 VEVFDPVTFLPIADIELPDAPR-FSV--------GPRVHIIGNCASSACLL-FFLF-----GSSAAAGLSVPGASDDQLT 162 (368)
T ss_dssp EEEECTTTCCEEEEEEETTSCS-CCB--------SCCTTSEEECTTSSCEE-EEEC-----SSSCEEEEEETTTEEEEEE
T ss_pred EEEEECCCCCEEEEECCCCCCE-ECC--------CCCCCCEEECCCCCEEE-EEEC-----CCCEEEEEECCCCCEEEEE
T ss_conf 9999899993830643785421-024--------68864058878998999-9968-----9985999989989386786
Q ss_pred CCCCC-------CEEEEEECCCCCEEEEEECCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCEEEEEECCCCCEEEEEE
Q ss_conf 56798-------54589993699969999628999999939999179805879994068877589999945987258997
Q 000736 219 ELKAF-------MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVV 291 (1323)
Q Consensus 219 e~~~g-------~~~slawsPdG~lIAs~~~d~~~~~~~~V~l~e~nGl~~~ef~l~~~~~~~V~~laWSpDg~~LA~~~ 291 (1323)
..... ....+++++||.++.....+.. ... ...... .. ......+....+++++..+....
T Consensus 163 ~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~----~~~-~~~~~~------~~-~~~~~~~~~~~~~~~g~~~~~~~ 230 (368)
T d1mdah_ 163 KSASCFHIHPGAAATHYLGSCPASLAASDLAAAP----AAA-GIVGAQ------CT-GAQNCSSQAAQANYPGMLVWAVA 230 (368)
T ss_dssp ECSSCCCCEEEETTEEECCCCTTSCEEEECCSSC----CCC-EECCCC------SC-TTSCBCSCCEEETTTTEEEECBS
T ss_pred ECCCCCEECCCCCCEEEEECCCCCEEEEEECCCC----EEE-EEEECC------CC-CCCCCCEEECCCCCCCEEEEECC
T ss_conf 0467523746998239999489988999826896----266-653031------11-35666466010155868999348
Q ss_pred CCCCCCEEEEEEEECCEEEEEEEEEEECCCCEEEEECCCCCCEEEEEECCCCEEEEEEEEEEE--ECCCEEEEEEECCEE
Q ss_conf 168877499999207756777699982598399999159992799994499499999999521--089906999919979
Q 000736 292 RFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTA--VMENSTALVIDGSKI 369 (1323)
Q Consensus 292 ~d~~~~~VqlW~~~n~~wyLkqel~~~~~~~~~v~W~p~~~~~L~~~~~~g~~~~~~~~~~~~--~~d~~~v~viDg~~i 369 (1323)
+ .+.+++.....-.................|.|.+...+ .+..++........-... ......+.++|
T Consensus 231 --~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D---- 300 (368)
T d1mdah_ 231 --S---SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMV-AKLKNTDGIMILTVEHSRSCLAAAENTSSVT---- 300 (368)
T ss_dssp --S---CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCE-EEETTTTEEEEEEEECSSCTTSCEEEEEEEE----
T ss_pred --C---CEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEE-EECCCCCEEEEEECCCCCEEECCCCEEEEEE----
T ss_conf --9---77999606993699760246543045540127883568-8717998799983589733405886499998----
Q ss_pred EEEECCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCC
Q ss_conf 99425776799983012102899889999922999999999988981999978998
Q 000736 370 LVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1323)
Q Consensus 370 ~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFspdg~~~~LAs~s~Dg~I~lw~~~~~ 425 (1323)
....- ...++.+...+.+++|||||....+++...|++|.+|+..+.
T Consensus 301 ----~~t~~-----~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg 347 (368)
T d1mdah_ 301 ----ASVGQ-----TSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD 347 (368)
T ss_dssp ----SSSCC-----EEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred ----CCCCC-----EEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCC
T ss_conf ----99994-----868955899651799998999899999489996999989999
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=1.4e-08 Score=73.82 Aligned_cols=242 Identities=11% Similarity=0.120 Sum_probs=123.0
Q ss_pred EEECCCCEEEEEECCCCEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEC---------CC
Q ss_conf 662589899999379728998224433433311202222222235799997899999039998999968---------99
Q 000736 27 ALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTS---------SG 97 (1323)
Q Consensus 27 ~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~i~~spd~~~La~as~---------dG 97 (1323)
-|-.+++.+|. ..++.|..++. .+++. .+. +....+ ..-.+.+..||||++.+++++. .|
T Consensus 23 ~W~~~~~~~~~-~~~g~i~~~~~--~~~~~--~~l-----~~~~~~-~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~ 91 (465)
T d1xfda1 23 KWISDTEFIYR-EQKGTVRLWNV--ETNTS--TVL-----IEGKKI-ESLRAIRYEISPDREYALFSYNVEPIYQHSYTG 91 (465)
T ss_dssp CBSSSSCBCCC-CSSSCEEEBCG--GGCCC--EEE-----ECTTTT-TTTTCSEEEECTTSSEEEEEESCCCCSSSCCCS
T ss_pred EEECCCCEEEE-ECCCCEEEEEC--CCCCE--EEE-----ECCCCC-CCCCCCEEEECCCCCEEEEEECCCCEEEEECCC
T ss_conf 89179848999-28996999987--89988--998-----727644-445532138989888699998451004760335
Q ss_pred CEEEEECCCCEEEEEC---EECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCEEEEEEECCCCCCCEE--------CC
Q ss_conf 5999968999199910---035959999993789969999699649999404721012320346797400--------14
Q 000736 98 LLLLHSVDGNATEVVG---RVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDV--------HE 166 (1323)
Q Consensus 98 ~I~lw~~~~~~~e~vg---~~~~~I~~~awSPDG~~LA~~s~d~tI~l~t~~~d~~~e~~l~~~~~~~~V--------s~ 166 (1323)
.+.++++.++....+. ...+.+..+.|||||+.||.+.+. .|.++...... ...+..+.....| .+
T Consensus 92 ~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~-nl~~~~~~~~~--~~~lt~~g~~~~i~nG~~d~vye 168 (465)
T d1xfda1 92 YYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFEN-NIYYCAHVGKQ--AIRVVSTGKEGVIYNGLSDWLYE 168 (465)
T ss_dssp EEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETT-EEEEESSSSSC--CEEEECCCBTTTEEEEECCHHHH
T ss_pred CEEEEECCCCCEEECCCCCCCCCCCCEEEECCCCCEEEEEECC-EEEEEECCCCC--EEEEECCCCCCEEECCCCCHHHH
T ss_conf 2899985688456415766776431100242678569999613-29999548996--58971126766044366431001
Q ss_pred CCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECC--CCCEEEEECCCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 76246899857899906885799922554455889889999799--9936664156798545899936999699996289
Q 000736 167 PELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD--SGTLQASSELKAFMGAVLEWMPSGANIAAVYDRK 244 (1323)
Q Consensus 167 tqf~~~d~~v~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~--~G~l~~t~e~~~g~~~slawsPdG~lIAs~~~d~ 244 (1323)
..+. .....+-|||||++|| ....|. ..++.+... .+. .......+.+...|....
T Consensus 169 ee~~---~~~~a~~WSPDgk~ia-f~~~D~-----s~V~~~~~~~~~~~-------~~p~~~~~~Yp~~G~~np------ 226 (465)
T d1xfda1 169 EEIL---KTHIAHWWSPDGTRLA-YAAIND-----SRVPIMELPTYTGS-------IYPTVKPYHYPKAGSENP------ 226 (465)
T ss_dssp HTTS---SSSEEEEECTTSSEEE-EEEEEC-----TTSCEEEECCCSSS-------SSCCCEEEECCBTTSCCC------
T ss_pred HHHC---CCCCEEEECCCCCEEE-EEEECC-----CCCCEEECCCCCCC-------CCCEEEEEECCCCCCCCC------
T ss_conf 2303---6643489779898689-999536-----66614641234454-------443133453025688897------
Q ss_pred CCCCCCEEEEEECCCEEEEEEEECC----CCCCCEEEEEECCCCCEEEEEECCCCC-CEEEEEEEECCE
Q ss_conf 9999993999917980587999406----887758999994598725899716887-749999920775
Q 000736 245 SENKCPSIVFYERNGLERSSFDINE----QIDSTVELLKWNCMSDLLAAVVRFEEY-DSVKICFFSNNH 308 (1323)
Q Consensus 245 ~~~~~~~V~l~e~nGl~~~ef~l~~----~~~~~V~~laWSpDg~~LA~~~~d~~~-~~VqlW~~~n~~ 308 (1323)
...+.+++.++.......++. ..+.-+..+.|+||+++++......+. ..+.+++..+..
T Consensus 227 ----~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~ 291 (465)
T d1xfda1 227 ----SISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV 291 (465)
T ss_dssp ----EEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC
T ss_pred ----CEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCEEEEECCCCCC
T ss_conf ----21379983689817899952576766663045668757993899997410030137997079992
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=4.5e-08 Score=70.26 Aligned_cols=170 Identities=19% Similarity=0.130 Sum_probs=92.7
Q ss_pred CEEEEECCCCEEEEECEECCCEEEEEECCCCCEEEEEECCCC---EEEEEECCCEEEEEEECCCCCCCEECCCCCCCCCC
Q ss_conf 599996899919991003595999999378996999969964---99994047210123203467974001476246899
Q 000736 98 LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQ---ILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1323)
Q Consensus 98 ~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~t---I~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~d~ 174 (1323)
+|.+.|.++.....+......+...+|||||+.||.++.... +.++....... ..+. .+..
T Consensus 20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~--~~~~--------------~~~~ 83 (269)
T d2hqsa1 20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVA--------------SFPR 83 (269)
T ss_dssp EEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--EEEE--------------CCSS
T ss_pred EEEEECCCCCCCEEEECCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCE--EEEE--------------EEEC
T ss_conf 99999289997679865898426038878999899998152675134431136750--6776--------------4202
Q ss_pred CEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEE
Q ss_conf 85789990688579992255445588988999979999366641567985458999369996999962899999993999
Q 000736 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1323)
Q Consensus 175 ~v~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~g~~~slawsPdG~lIAs~~~d~~~~~~~~V~l 254 (1323)
......|+|||+.++..+ .. .+...+..+....+....... .........|++++..+...+.... ...|..
T Consensus 84 ~~~~~~~spdg~~i~~~~-~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g---~~~i~~ 155 (269)
T d2hqsa1 84 HNGAPAFSPDGSKLAFAL-SK---TGSLNLYVMDLASGQIRQVTD-GRSNNTEPTWFPDSQNLAFTSDQAG---RPQVYK 155 (269)
T ss_dssp CEEEEEECTTSSEEEEEE-CT---TSSCEEEEEETTTCCEEECCC-CSSCEEEEEECTTSSEEEEEECTTS---SCEEEE
T ss_pred CCCCCEECCCCCEEEEEE-EC---CCCCCEEECCCCCCCCEEEEE-CCCCCCCCCCCCCCCCCEECCCCCC---CCEEEE
T ss_conf 454302448898646764-02---786410000222122000010-1442114543455443300001268---743865
Q ss_pred EECCCEEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 9179805879994068877589999945987258997168
Q 000736 255 YERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE 294 (1323)
Q Consensus 255 ~e~nGl~~~ef~l~~~~~~~V~~laWSpDg~~LA~~~~d~ 294 (1323)
.+.++..... +. ..........|||||+.++....+.
T Consensus 156 ~~~~~~~~~~--~~-~~~~~~~~~~~spdg~~~~~~~~~~ 192 (269)
T d2hqsa1 156 VNINGGAPQR--IT-WEGSQNQDADVSSDGKFMVMVSSNG 192 (269)
T ss_dssp EETTSSCCEE--CC-CSSSEEEEEEECTTSSEEEEEEECS
T ss_pred EECCCCCCEE--EE-CCCCCCCCCCCCCCCCEEEEEEECC
T ss_conf 4213310001--00-0122223432234543057786058
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.27 E-value=1.2e-09 Score=81.53 Aligned_cols=74 Identities=15% Similarity=-0.022 Sum_probs=32.3
Q ss_pred EEEEECCCCEEEEEECCCCC----CCCCCEEEEEECCCCCEEEEECCCC-------CCEEEEEECCCCCEEEEEECCCCC
Q ss_conf 89990688579992255445----5889889999799993666415679-------854589993699969999628999
Q 000736 178 PISWRGDGKYFATLSEFCNS----SKLHKRLKVWERDSGTLQASSELKA-------FMGAVLEWMPSGANIAAVYDRKSE 246 (1323)
Q Consensus 178 ~IsWs~DG~~lAtvss~d~~----~~~d~~irVWd~~~G~l~~t~e~~~-------g~~~slawsPdG~lIAs~~~d~~~ 246 (1323)
.++|+|||++++ +++.... +..+..|++||..+++.....+.+. .....++|+|||++++++..+.
T Consensus 69 ~~a~spDg~~i~-~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~-- 145 (368)
T d1mdah_ 69 LAVAGHSGSDFA-LASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS-- 145 (368)
T ss_dssp EEEECTTSSCEE-EEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSS--
T ss_pred CCEECCCCCEEE-EECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEECCCCCCCCEEECCCCCEEEEEECCC--
T ss_conf 513989998899-97556764010356786999989999383064378542102468864058878998999996899--
Q ss_pred CCCCEEEEEEC
Q ss_conf 99993999917
Q 000736 247 NKCPSIVFYER 257 (1323)
Q Consensus 247 ~~~~~V~l~e~ 257 (1323)
..+.+|+.
T Consensus 146 ---~~v~~~d~ 153 (368)
T d1mdah_ 146 ---SAAAGLSV 153 (368)
T ss_dssp ---SCEEEEEE
T ss_pred ---CEEEEEEC
T ss_conf ---85999989
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.04 E-value=9.1e-07 Score=60.92 Aligned_cols=48 Identities=4% Similarity=0.058 Sum_probs=25.4
Q ss_pred CCCEEE--EECCCCEEEEECE----ECCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 995999--9689991999100----359599999937899699996996499994
Q 000736 96 SGLLLL--HSVDGNATEVVGR----VEGGVRFISPSPDGDLLGVTTGFGQILVMT 144 (1323)
Q Consensus 96 dG~I~l--w~~~~~~~e~vg~----~~~~I~~~awSPDG~~LA~~s~d~tI~l~t 144 (1323)
+|.|.. +|.++++++.+.. ....+.-+++||||+.|..+..+ .+..+.
T Consensus 13 ~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~~-~~~~~~ 66 (365)
T d1jofa_ 13 PGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFA 66 (365)
T ss_dssp SCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEEEEECCCCCCCCEEEECCCCCEEEEEECC-CEEEEE
T ss_conf 998999998588893898454451689997779994898999999389-478999
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.95 E-value=1.9e-06 Score=58.59 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=61.2
Q ss_pred CCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCEEEEEE
Q ss_conf 99789999903999899996899599996899919991003595999999378996999969964999940472101232
Q 000736 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1323)
Q Consensus 75 ~~~V~~i~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tI~l~t~~~d~~~e~~ 154 (1323)
+..+-++++.|||+.+++...+|+|..|+.++. .+......+++.+++|+|||.++++...++.+..|......-....
T Consensus 27 ~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~ 105 (302)
T d2p4oa1 27 NTFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 105 (302)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCCCCCEEECCCCCEEEEECCCCEEEEEECCCC-EEEEECCCCCCCEEEECCCCCEEEEECCCCEEEEEEECCCCCCEEE
T ss_conf 988478779999889999688998999908998-8999717998536898677886998328953788871011110121
Q ss_pred ECCCCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEEC
Q ss_conf 0346797400147624689985789990688579992255445588988999979
Q 000736 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWER 209 (1323)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~d~~v~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~ 209 (1323)
+..... ......+.+.+||.+++ ..+ ....+..++.
T Consensus 106 ~~~~~~------------~~~~n~i~~~~~g~~~v-~~~------~~~~i~~~~~ 141 (302)
T d2p4oa1 106 LLTLPD------------AIFLNGITPLSDTQYLT-ADS------YRGAIWLIDV 141 (302)
T ss_dssp EEECTT------------CSCEEEEEESSSSEEEE-EET------TTTEEEEEET
T ss_pred CCCCCC------------CCCCCEEEECCCCCEEE-ECC------CCCCCEEEEC
T ss_conf 023578------------63221667715797875-035------6554102421
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.90 E-value=2.9e-06 Score=57.32 Aligned_cols=196 Identities=9% Similarity=0.074 Sum_probs=73.5
Q ss_pred CEEEEEEECCCCEEEEEE--CCCCEEEEECCCCEEEEEC-EECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCEEEEE
Q ss_conf 789999903999899996--8995999968999199910-0359599999937899699996996499994047210123
Q 000736 77 SITAFDYLMEKEALIVGT--SSGLLLLHSVDGNATEVVG-RVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1323)
Q Consensus 77 ~V~~i~~spd~~~La~as--~dG~I~lw~~~~~~~e~vg-~~~~~I~~~awSPDG~~LA~~s~d~tI~l~t~~~d~~~e~ 153 (1323)
.+..+.+.++.....++. .++.|..++.++.....++ ..-.....++..++|.+++.....+.+.+++.++..+...
T Consensus 71 ~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~ 150 (279)
T d1q7fa_ 71 YPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKF 150 (279)
T ss_dssp SEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEE
T ss_pred CCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCEECCCCCCCEEEEEECCCEEEEECCCCCEEECC
T ss_conf 66300012344552000047753100000256302403888642542000014784799963263256762687501002
Q ss_pred EECCCCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEC--CCCCCEEEEEEC
Q ss_conf 203467974001476246899857899906885799922554455889889999799993666415--679854589993
Q 000736 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE--LKAFMGAVLEWM 231 (1323)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~d~~v~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e--~~~g~~~slaws 231 (1323)
.... +......++..++|..++ +.. ....|++|+. +|+...+.. +.......|+..
T Consensus 151 g~~~--------------~~~~~~~i~~d~~g~i~v-~d~------~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD 208 (279)
T d1q7fa_ 151 GCSK--------------HLEFPNGVVVNDKQEIFI-SDN------RAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGIN 208 (279)
T ss_dssp ECTT--------------TCSSEEEEEECSSSEEEE-EEG------GGTEEEEEET-TCCEEEEESCTTTSCSEEEEEEC
T ss_pred CCCC--------------CCCCCCEEEECCCEEEEE-EEC------CCCCEEEEEC-CCCEEEEECCCCCCCCCCCCCCC
T ss_conf 2001--------------025662432012001786-201------3551002304-79444530113211487623231
Q ss_pred CCCCEEEEEECCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEE
Q ss_conf 6999699996289999999399991798058799940688775899999459872589971688774999992
Q 000736 232 PSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1323)
Q Consensus 232 PdG~lIAs~~~d~~~~~~~~V~l~e~nGl~~~ef~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~ 304 (1323)
|+|+++.+-... ...|..|+++|.....+..... ......|+..|||.+++ +..+. .|++|..
T Consensus 209 ~~G~i~Vad~~~-----~~~v~~f~~~G~~~~~~~~~~~-~~~p~~vav~~dG~l~V-~~~n~---~v~~fr~ 271 (279)
T d1q7fa_ 209 SNGEILIADNHN-----NFNLTIFTQDGQLISALESKVK-HAQCFDVALMDDGSVVL-ASKDY---RLYIYRY 271 (279)
T ss_dssp TTCCEEEEECSS-----SCEEEEECTTSCEEEEEEESSC-CSCEEEEEEETTTEEEE-EETTT---EEEEEEC
T ss_pred CCCEEEEEECCC-----CCEEEEECCCCCEEEEEECCCC-CCCEEEEEEECCCCEEE-EECCC---EEEEEEE
T ss_conf 478699997899-----8089999999999999968888-89883799908991999-91899---6999872
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=3e-06 Score=57.25 Aligned_cols=142 Identities=13% Similarity=0.115 Sum_probs=74.4
Q ss_pred EEEEECCCCEEEEEECCCCEEEEECCCCEEE-EECE---ECCCEEEEEECCCCCEEEEEECCCCEEEEEEC-------CC
Q ss_conf 9999039998999968995999968999199-9100---35959999993789969999699649999404-------72
Q 000736 80 AFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGR---VEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-------WD 148 (1323)
Q Consensus 80 ~i~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~---~~~~I~~~awSPDG~~LA~~s~d~tI~l~t~~-------~d 148 (1323)
...|+++++.+. -..+|.|.+|+..++... ++.. ..-.+....|||||+.|++.+.-.. +|... +|
T Consensus 21 ~~~W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~--~~r~s~~~~~~i~d 97 (465)
T d1xfda1 21 EAKWISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEP--IYQHSYTGYYVLSK 97 (465)
T ss_dssp CCCBSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCC--CSSSCCCSEEEEEE
T ss_pred CCEEECCCCEEE-EECCCCEEEEECCCCCEEEEECCCCCCCCCCCEEEECCCCCEEEEEECCCC--EEEEECCCCEEEEE
T ss_conf 878917984899-928996999987899889987276444455321389898886999984510--04760335289998
Q ss_pred EEEE--EEECCCCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEE-EECCCCC--
Q ss_conf 1012--3203467974001476246899857899906885799922554455889889999799993666-4156798--
Q 000736 149 LLYE--NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA-SSELKAF-- 223 (1323)
Q Consensus 149 ~~~e--~~l~~~~~~~~Vs~tqf~~~d~~v~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~-t~e~~~g-- 223 (1323)
+.++ ..+.... ..+..+....|||||+.+|.+. ++.+.+.+..+|.... +..+..+
T Consensus 98 ~~~~~~~~l~~~~-----------~~~~~l~~~~wSPDG~~iafv~--------~~nl~~~~~~~~~~~~lt~~g~~~~i 158 (465)
T d1xfda1 98 IPHGDPQSLDPPE-----------VSNAKLQYAGWGPKGQQLIFIF--------ENNIYYCAHVGKQAIRVVSTGKEGVI 158 (465)
T ss_dssp SSSCCCEECCCTT-----------CCSCCCSBCCBCSSTTCEEEEE--------TTEEEEESSSSSCCEEEECCCBTTTE
T ss_pred CCCCCEEECCCCC-----------CCCCCCCEEEECCCCCEEEEEE--------CCEEEEEECCCCCEEEEECCCCCCEE
T ss_conf 5688456415766-----------7764311002426785699996--------13299995489965897112676604
Q ss_pred ---------------CEEEEEECCCCCEEEEEECC
Q ss_conf ---------------54589993699969999628
Q 000736 224 ---------------MGAVLEWMPSGANIAAVYDR 243 (1323)
Q Consensus 224 ---------------~~~slawsPdG~lIAs~~~d 243 (1323)
...++-|||||+.||....|
T Consensus 159 ~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D 193 (465)
T d1xfda1 159 YNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIN 193 (465)
T ss_dssp EEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEE
T ss_pred ECCCCCHHHHHHHCCCCCEEEECCCCCEEEEEEEC
T ss_conf 43664310012303664348977989868999953
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.81 E-value=4.1e-06 Score=56.23 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=38.3
Q ss_pred EECC--CCEEEEEECCCCEEEEECCCCEEEEECEECCCEEEEEECCCCCEEEEEE
Q ss_conf 9039--9989999689959999689991999100359599999937899699996
Q 000736 83 YLME--KEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTT 135 (1323)
Q Consensus 83 ~spd--~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s 135 (1323)
.+|| |+.++.. .+|+|.+.+++++....+....+.+...+|||||+.||...
T Consensus 6 ~sPdi~G~~v~f~-~~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~ 59 (281)
T d1k32a2 6 LNPDIHGDRIIFV-CCDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRV 59 (281)
T ss_dssp EEEEEETTEEEEE-ETTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEE
T ss_pred CCCCCCCCEEEEE-ECCCEEEEECCCCCEEEEECCCCCCCCEEECCCCCEEEEEE
T ss_conf 5888799999999-09968999899998799766998526779878999899998
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.81 E-value=5.9e-06 Score=55.10 Aligned_cols=236 Identities=8% Similarity=-0.036 Sum_probs=113.4
Q ss_pred CEEEEEEECCCCEEEEEE-CC-CCEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCE
Q ss_conf 215796625898999993-79-7289982244334333112022222222357999978999990399989999689959
Q 000736 22 ILQFSALDIEQNRLFFAS-SA-NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLL 99 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s-~~-~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~i~~spd~~~La~as~dG~I 99 (1323)
.+..+++|.+++ +|+++ .. ..+..++.. .... .. +. +.....+.++++.+++...++-..++.|
T Consensus 15 ~P~~vavd~dG~-i~v~~~~~~~~i~~~~~~--~~~~---~~-----~~---~~~~~~p~gvav~~~g~i~v~d~~~~~i 80 (260)
T d1rwia_ 15 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATG--STGT---TV-----LP---FNGLYQPQGLAVDGAGTVYVTDFNNRVV 80 (260)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEEC------CE---EE-----CC---CCSCCSCCCEEECTTCCEEEEETTTEEE
T ss_pred CCCEEEECCCCC-EEEEECCCCCEEEEECCC--CCEE---EE-----EC---CCCCCCCEEEEECCCCCEEEEEEEECEE
T ss_conf 878899969999-999971899889999389--9668---97-----43---6986684089993899889863100003
Q ss_pred EEEECCCCEEEEECEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCEEEEEEECCCCCCCEECCCCCCCCCCCEEEE
Q ss_conf 99968999199910035959999993789969999699649999404721012320346797400147624689985789
Q 000736 100 LLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1323)
Q Consensus 100 ~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tI~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~d~~v~~I 179 (1323)
.+++..+.........-.....++++|+|.+.+.-.....+...+.............. .....|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~---------------~~p~~i 145 (260)
T d1rwia_ 81 TLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGL---------------NDPDGV 145 (260)
T ss_dssp EECTTCSCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSC---------------CSCCEE
T ss_pred EEEEECCCEEEEEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCC---------------CCCCEE
T ss_conf 55421120000001000000000245532057503355532112322220122320366---------------775205
Q ss_pred EEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEC-CCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEECC
Q ss_conf 9906885799922554455889889999799993666415-679854589993699969999628999999939999179
Q 000736 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1323)
Q Consensus 180 sWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e-~~~g~~~slawsPdG~lIAs~~~d~~~~~~~~V~l~e~n 258 (1323)
+..++|.+++ +.. ....+..++. +|....+.. ..-+....|++.|+|++.++... .+.|.-++.+
T Consensus 146 ~~~~~g~~~v-~~~------~~~~i~~~d~-~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~------~~~i~~~~~~ 211 (260)
T d1rwia_ 146 AVDNSGNVYV-TDT------DNNRVVKLEA-ESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN------TNQVVKLLAG 211 (260)
T ss_dssp EECTTCCEEE-EEG------GGTEEEEECT-TTCCEEECCCSSCCSEEEEEECTTCCEEEEETT------TTEEEEECTT
T ss_pred EECCCCCEEE-ECC------CCCCCCCCCC-CCCEEEEEECCCCCCCCCCEEEEEEEEEEEECC------CCEEEEEECC
T ss_conf 4548998864-102------5643322234-310012221011478763123100013432148------9989999699
Q ss_pred CEEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEE
Q ss_conf 80587999406887758999994598725899716887749999920
Q 000736 259 GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1323)
Q Consensus 259 Gl~~~ef~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~ 305 (1323)
+..... +....-.....|++++||.++.+-..+. .|+..+.-
T Consensus 212 ~~~~~~--~~~~~~~~P~~i~~d~~g~l~vad~~~~---rI~~i~~~ 253 (260)
T d1rwia_ 212 STTSTV--LPFTGLNTPLAVAVDSDRTVYVADRGND---RVVKLTSL 253 (260)
T ss_dssp CSCCEE--CCCCSCCCEEEEEECTTCCEEEEEGGGT---EEEEECCC
T ss_pred CCEEEE--ECCCCCCCEEEEEEECCCCEEEEECCCC---EEEEEECC
T ss_conf 976999--7069989817999908999999979999---89999599
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.77 E-value=5.5e-08 Score=69.64 Aligned_cols=310 Identities=10% Similarity=0.001 Sum_probs=152.2
Q ss_pred EEEEECCCCEEEEECCCCEE-EEECEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCEEEEEEECCCCCCCEECCCC
Q ss_conf 99996899599996899919-99100359599999937899699996996499994047210123203467974001476
Q 000736 90 LIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPE 168 (1323)
Q Consensus 90 La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~d~tI~l~t~~~d~~~e~~l~~~~~~~~Vs~tq 168 (1323)
+++++.+|+|.+|++.+++. ..+. .||||+.. +.+..+.+..++.. . .+ ....+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~Ip---------Vfspd~~~-g~g~~~es~~vl~~--~--~~--~~~gd--------- 68 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIP---------VFNVDSAT-GWGITNESKEILGG--D--QQ--YLNGD--------- 68 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEEC---------SSSBCTTT-CTTTSHHHHHHHCS--S--SC--CSCCC---------
T ss_pred EEECCCCCCEEEEECCCCCEEEEEE---------EECCCCCE-EEEECCCCCEEEEC--C--CC--CCCCC---------
T ss_conf 9968877748999678980799997---------67578987-99988865047831--3--32--25675---------
Q ss_pred CCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEC-CCCCCEEEEEECCCCC--EEEEEECCCC
Q ss_conf 246899857899906885799922554455889889999799993666415-6798545899936999--6999962899
Q 000736 169 LSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-LKAFMGAVLEWMPSGA--NIAAVYDRKS 245 (1323)
Q Consensus 169 f~~~d~~v~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e-~~~g~~~slawsPdG~--lIAs~~~d~~ 245 (1323)
.|-........+|||+|+. ++. ....+|.+||.++++...+.+ +.....+.++++|+|+ +++..+.+..
T Consensus 69 --~hhP~~s~t~gtpDGr~lf-V~d-----~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v 140 (441)
T d1qnia2 69 --CHHPHISMTDGRYDGKYLF-IND-----KANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVI 140 (441)
T ss_dssp --BCCCEEEEETTEEEEEEEE-EEE-----TTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCE
T ss_pred --CCCCCCCEECCCCCCCEEE-EEC-----CCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCEEEEEECCCCCC
T ss_conf --5677722103268888899-973-----89997999988778475579567887864348705699899995667754
Q ss_pred C---C--------CCCEEEEEECCCEEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEEEEE
Q ss_conf 9---9--------9993999917980587999406887758999994598725899716887749999920775677769
Q 000736 246 E---N--------KCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYE 314 (1323)
Q Consensus 246 ~---~--------~~~~V~l~e~nGl~~~ef~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~n~~wyLkqe 314 (1323)
. + ....+..++....... +.++. ......++|+|||+.+.+.+.+... +..++..... ....
T Consensus 141 ~~~~dg~~~~~~~~~~~~~~iD~~t~~v~-~qI~v--~~~p~~v~~spdGk~a~vt~~nse~--~~~id~~t~~--~~d~ 213 (441)
T d1qnia2 141 PQPNDGTDFSLDNSYTMFTAIDAETMDVA-WQVIV--DGNLDNTDADYTGKYATSTCYNSER--AVDLAGTMRN--DRDW 213 (441)
T ss_dssp ESSCSSSCCCGGGEEEEEEEEETTTCSEE-EEEEE--SSCCCCEEECSSSSEEEEEESCTTC--CSSHHHHTCS--SBCE
T ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCEEE-EEEEC--CCCCCCEEECCCCCEEEEEECCCCC--EEEEECCCCC--EEEE
T ss_conf 43676630014555323886637556064-78736--9986546987999989998517873--1898515712--1789
Q ss_pred EEEECCCCEEEEECCCCCCEEEEEECCCCEEEEEEEEEEEECCCEEEEEEECCEEEEEECCCCCCCCCCEEEEECCCCCE
Q ss_conf 99825983999991599927999944994999999995210899069999199799942577679998301210289988
Q 000736 315 IRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAV 394 (1323)
Q Consensus 315 l~~~~~~~~~v~W~p~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~i~lt~l~~~~vPpPm~~~~l~~~~~V 394 (1323)
+... .....+...|++.. +. ..+.+ +.++|+.. .. . ..+.+.-+...
T Consensus 214 i~v~-n~p~~~~~~~dGk~-~~------------------v~~~~-v~vvd~~~-------~~----~-v~~~IPvgksP 260 (441)
T d1qnia2 214 VVVF-NVERIAAAVKAGNF-KT------------------IGDSK-VPVVDGRG-------ES----E-FTRYIPVPKNP 260 (441)
T ss_dssp EEEE-EHHHHHHHHHTTCC-BC------------------CTTCC-CCEEECSS-------SC----S-SEEEECCBSSC
T ss_pred EEEC-CCCCEEEEECCCCE-EE------------------ECCCC-CEEEECCC-------CC----C-EEEEEECCCCC
T ss_conf 9968-85110799669999-99------------------69998-28998036-------87----0-68997179886
Q ss_pred EEEEEECCCCCCE-EEEEECCCCEEEEECCCCCCCCCCCCCCEEEEEECC-CCCC-CCEEEEEEECCCEEEEEEECCCCC
Q ss_conf 9999922999999-999988981999978998852223597124742024-4566-837999994498499998269987
Q 000736 395 TEMAFYSKSSKNC-LAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACIS-ETAF-GSVIHLIWLGSHLLLSVSHHGPRH 471 (1323)
Q Consensus 395 ~~VaFspdg~~~~-LAs~s~Dg~I~lw~~~~~~~~~~~~g~~~~~~~~~~-~~~~-~~v~~l~~~~d~~lla~~~~~~~~ 471 (1323)
..|++|||| +. +++...+++|.+|++..... .+.++ .....++. +... -...|..|.+++..+.+...+ +
T Consensus 261 hGv~vSPDG--kyl~~~~~~~~tvsv~d~~k~~~--~~~~~-~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~d--s 333 (441)
T d1qnia2 261 HGLNTSPDG--KYFIANGKLSPTVSVIAIDKLDD--LFEDK-IELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFID--S 333 (441)
T ss_dssp CCEEECTTS--CEEEEECTTSSBEEEEEGGGHHH--HTTTS-SCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTT--T
T ss_pred CCCEECCCC--CEEEEECCCCCCEEEEEEEHHHH--HHHCC-CCCCEEEEEECCCCCCCCCCEECCCCEEEECCCCC--C
T ss_conf 672689998--78999077599389998322445--75256-88424799601455476652265785599852443--1
Q ss_pred EEEEEEEE
Q ss_conf 02899831
Q 000736 472 SNYFRGAT 479 (1323)
Q Consensus 472 ~~~~~~~~ 479 (1323)
+++.|++.
T Consensus 334 ~v~kw~~~ 341 (441)
T d1qnia2 334 QVCKWNIA 341 (441)
T ss_dssp EEEEEEHH
T ss_pred EEEEECCC
T ss_conf 68972354
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.73 E-value=9.9e-06 Score=53.52 Aligned_cols=60 Identities=10% Similarity=0.149 Sum_probs=33.4
Q ss_pred CEEEEEEECCCCEEEEEECCCCEEEEECCCCEEE-EECEECCCEEEEEECCCCCEEEEEEC
Q ss_conf 7899999039998999968995999968999199-91003595999999378996999969
Q 000736 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTG 136 (1323)
Q Consensus 77 ~V~~i~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~ 136 (1323)
.+-+++|.++|+...+-..+|.|..|+.+++... .......+...++++|||.+++...+
T Consensus 41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~ 101 (319)
T d2dg1a1 41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLG 101 (319)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECT
T ss_pred CCEECEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEECC
T ss_conf 7470789999999999779999999989999599999489987038999999999999568
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.72 E-value=3.5e-08 Score=71.02 Aligned_cols=55 Identities=9% Similarity=-0.025 Sum_probs=36.2
Q ss_pred CEEEEEEECCCCEEEEE-ECCCCEEEEECCCCEEE-EEC-EECCCEEEEEECCCCCEE
Q ss_conf 78999990399989999-68995999968999199-910-035959999993789969
Q 000736 77 SITAFDYLMEKEALIVG-TSSGLLLLHSVDGNATE-VVG-RVEGGVRFISPSPDGDLL 131 (1323)
Q Consensus 77 ~V~~i~~spd~~~La~a-s~dG~I~lw~~~~~~~e-~vg-~~~~~I~~~awSPDG~~L 131 (1323)
.+......|||+.|.++ ..++.|.+|++++.++. ++. -+..++..++|||||+++
T Consensus 73 ~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~ 130 (441)
T d1qnia2 73 HISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTN 130 (441)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCC
T ss_pred CCCEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCEE
T ss_conf 7221032688888999738999799998877847557956788786434870569989
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.70 E-value=1.2e-05 Score=52.92 Aligned_cols=103 Identities=14% Similarity=0.104 Sum_probs=48.7
Q ss_pred EECCC--CCEEEEEECCCCEEEEEECCCEEEEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCC
Q ss_conf 99378--9969999699649999404721012320346797400147624689985789990688579992255445588
Q 000736 123 SPSPD--GDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKL 200 (1323)
Q Consensus 123 awSPD--G~~LA~~s~d~tI~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~d~~v~~IsWs~DG~~lAtvss~d~~~~~ 200 (1323)
.+||| |+.+|.++.+ .|-+++...... ..+... .......+|||||+.||.+...+.. ..
T Consensus 5 ~~sPdi~G~~v~f~~~~-dl~~~d~~~g~~--~~Lt~~--------------~~~~~~p~~SPDG~~iaf~~~~~~~-~~ 66 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCCD-DLWEHDLKSGST--RKIVSN--------------LGVINNARFFPDGRKIAIRVMRGSS-LN 66 (281)
T ss_dssp CEEEEEETTEEEEEETT-EEEEEETTTCCE--EEEECS--------------SSEEEEEEECTTSSEEEEEEEESTT-CC
T ss_pred CCCCCCCCCEEEEEECC-CEEEEECCCCCE--EEEECC--------------CCCCCCEEECCCCCEEEEEEEECCC-CC
T ss_conf 25888799999999099-689998999987--997669--------------9852677987899989999862898-77
Q ss_pred CCEEEEEECCCCCEEEEECCC------CCCEEEEEECCCCCEEEEEECC
Q ss_conf 988999979999366641567------9854589993699969999628
Q 000736 201 HKRLKVWERDSGTLQASSELK------AFMGAVLEWMPSGANIAAVYDR 243 (1323)
Q Consensus 201 d~~irVWd~~~G~l~~t~e~~------~g~~~slawsPdG~lIAs~~~d 243 (1323)
...+.+++..+|+........ .......+|+|+|+.|+.....
T Consensus 67 ~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 115 (281)
T d1k32a2 67 TADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAM 115 (281)
T ss_dssp EEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTT
T ss_pred CEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECC
T ss_conf 2289999825995288641688754764443431027988779999713
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.65 E-value=1.6e-05 Score=51.93 Aligned_cols=57 Identities=14% Similarity=0.123 Sum_probs=26.2
Q ss_pred EEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 789990688579992255445588988999979999366641567985458999369996999962
Q 000736 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYD 242 (1323)
Q Consensus 177 ~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~g~~~slawsPdG~lIAs~~~ 242 (1323)
..++++|||.+++ +.. .+++|..|+. +|+.... ....+....++|.|+|+++++...
T Consensus 31 e~iAv~pdG~l~v-t~~------~~~~I~~i~p-~g~~~~~-~~~~~~~~gla~~~dG~l~v~~~~ 87 (302)
T d2p4oa1 31 ENLASAPDGTIFV-TNH------EVGEIVSITP-DGNQQIH-ATVEGKVSGLAFTSNGDLVATGWN 87 (302)
T ss_dssp EEEEECTTSCEEE-EET------TTTEEEEECT-TCCEEEE-EECSSEEEEEEECTTSCEEEEEEC
T ss_pred CCEEECCCCCEEE-EEC------CCCEEEEEEC-CCCEEEE-ECCCCCCCEEEECCCCCEEEEECC
T ss_conf 7877999988999-968------8998999908-9988999-717998536898677886998328
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.52 E-value=3.8e-05 Score=49.37 Aligned_cols=66 Identities=17% Similarity=0.053 Sum_probs=29.1
Q ss_pred EEEEEEECCCCEEEEEEC-------CCCEEEEECCCCEEEEEC-----EECCCEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf 899999039998999968-------995999968999199910-----035959999993789969999699649999
Q 000736 78 ITAFDYLMEKEALIVGTS-------SGLLLLHSVDGNATEVVG-----RVEGGVRFISPSPDGDLLGVTTGFGQILVM 143 (1323)
Q Consensus 78 V~~i~~spd~~~La~as~-------dG~I~lw~~~~~~~e~vg-----~~~~~I~~~awSPDG~~LA~~s~d~tI~l~ 143 (1323)
+-+++|.|+|...++... +|.|..|+..++....+. ...+.-..++|+|||..|.++...+.+...
T Consensus 20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~ 97 (314)
T d1pjxa_ 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV 97 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred CEEEEEECCCCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEE
T ss_conf 717399699999999875402345299999998999959999777655678853069990799989999779839999
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.39 E-value=7.7e-05 Score=47.14 Aligned_cols=13 Identities=31% Similarity=0.624 Sum_probs=5.1
Q ss_pred EEEEEECCCCEEE
Q ss_conf 7899906885799
Q 000736 177 SPISWRGDGKYFA 189 (1323)
Q Consensus 177 ~~IsWs~DG~~lA 189 (1323)
..+++.+||.+++
T Consensus 85 ~gla~~~dG~l~v 97 (319)
T d2dg1a1 85 AAIKIHKDGRLFV 97 (319)
T ss_dssp EEEEECTTSCEEE
T ss_pred EEEEECCCCCEEE
T ss_conf 3899999999999
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.32 E-value=0.00011 Score=46.08 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=10.1
Q ss_pred EEEEECCCCCCEEEEEECCCCEEEEEC
Q ss_conf 999922999999999988981999978
Q 000736 396 EMAFYSKSSKNCLAAILSDGCLCVVDL 422 (1323)
Q Consensus 396 ~VaFspdg~~~~LAs~s~Dg~I~lw~~ 422 (1323)
.+++.++| ++.++....+.|..|+.
T Consensus 230 GiavD~~G--nlyVa~~~~g~I~~~dp 254 (314)
T d1pjxa_ 230 GMDFDEDN--NLLVANWGSSHIEVFGP 254 (314)
T ss_dssp EEEEBTTC--CEEEEEETTTEEEEECT
T ss_pred EEEEECCC--CEEEEECCCCEEEEEEC
T ss_conf 25783478--57999827999999969
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.27 E-value=0.00014 Score=45.31 Aligned_cols=243 Identities=10% Similarity=0.073 Sum_probs=115.8
Q ss_pred EEEEEECCCCCEEEEEECCCCEEEEEECCCEEEEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCC-CEEEEEECCCCC
Q ss_conf 9999993789969999699649999404721012320346797400147624689985789990688-579992255445
Q 000736 119 VRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDG-KYFATLSEFCNS 197 (1323)
Q Consensus 119 I~~~awSPDG~~LA~~s~d~tI~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~d~~v~~IsWs~DG-~~lAtvss~d~~ 197 (1323)
-..++++|||++.++-..++.|.+++.+++.+.........++.. ..-..+++..+. .+++ +..
T Consensus 25 P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~----------~~p~~~~~~~~~~~~~~-~~~---- 89 (279)
T d1q7fa_ 25 PSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQL----------LYPNRVAVVRNSGDIIV-TER---- 89 (279)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCB----------SSEEEEEEETTTTEEEE-EEC----
T ss_pred CCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCC----------CCCCCCCCCCCCCCCCE-ECC----
T ss_conf 007999499989999799898999969999999816657886642----------26630001234455200-004----
Q ss_pred CCCCCEEEEEECCCCCEEEEECC-CCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCEE
Q ss_conf 58898899997999936664156-79854589993699969999628999999939999179805879994068877589
Q 000736 198 SKLHKRLKVWERDSGTLQASSEL-KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVE 276 (1323)
Q Consensus 198 ~~~d~~irVWd~~~G~l~~t~e~-~~g~~~slawsPdG~lIAs~~~d~~~~~~~~V~l~e~nGl~~~ef~l~~~~~~~V~ 276 (1323)
...+.|.+++. .|....+... .......++..++|+++++... ...+..++.+|.....|.... +.....
T Consensus 90 -~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~------~~~~~~~~~~g~~~~~~g~~~-~~~~~~ 160 (279)
T d1q7fa_ 90 -SPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECK------VMRVIIFDQNGNVLHKFGCSK-HLEFPN 160 (279)
T ss_dssp -GGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETT------TTEEEEECTTSCEEEEEECTT-TCSSEE
T ss_pred -CCCCCCCCCCC-CCCCEEECCCCCCCCCCEECCCCCCCEEEEEEC------CCEEEEECCCCCEEECCCCCC-CCCCCC
T ss_conf -77531000002-563024038886425420000147847999632------632567626875010022001-025662
Q ss_pred EEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEEEEEEEEEC--CCCEEEEECCCCCCEEEEEEC-CC-CEEEEEEEEE
Q ss_conf 9999459872589971688774999992077567776999825--983999991599927999944-99-4999999995
Q 000736 277 LLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLR--RDGIRFMWHPTKPLQLICWTL-DG-QITTYNFIWT 352 (1323)
Q Consensus 277 ~laWSpDg~~LA~~~~d~~~~~VqlW~~~n~~wyLkqel~~~~--~~~~~v~W~p~~~~~L~~~~~-~g-~~~~~~~~~~ 352 (1323)
.++..++|.++.+..... .|++++...-. + .++.... ..+..++.+|++. +.+... ++ .+. .|+
T Consensus 161 ~i~~d~~g~i~v~d~~~~---~V~~~d~~G~~--~-~~~g~~g~~~~P~giavD~~G~--i~Vad~~~~~~v~----~f~ 228 (279)
T d1q7fa_ 161 GVVVNDKQEIFISDNRAH---CVKVFNYEGQY--L-RQIGGEGITNYPIGVGINSNGE--ILIADNHNNFNLT----IFT 228 (279)
T ss_dssp EEEECSSSEEEEEEGGGT---EEEEEETTCCE--E-EEESCTTTSCSEEEEEECTTCC--EEEEECSSSCEEE----EEC
T ss_pred EEEECCCEEEEEEECCCC---CEEEEECCCCE--E-EEECCCCCCCCCCCCCCCCCCE--EEEEECCCCCEEE----EEC
T ss_conf 432012001786201355---10023047944--4-5301132114876232314786--9999789980899----999
Q ss_pred EEECCCEEEEEEECCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCC
Q ss_conf 210899069999199799942577679998301210289988999992299999999998898199997899
Q 000736 353 TAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1323)
Q Consensus 353 ~~~~d~~~v~viDg~~i~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFspdg~~~~LAs~s~Dg~I~lw~~~~ 424 (1323)
+ +|.-+..+.-.. .......|++.||| + |.+...++.|++|+...
T Consensus 229 --~---------~G~~~~~~~~~~-------------~~~~p~~vav~~dG--~-l~V~~~n~~v~~fr~~~ 273 (279)
T d1q7fa_ 229 --Q---------DGQLISALESKV-------------KHAQCFDVALMDDG--S-VVLASKDYRLYIYRYVQ 273 (279)
T ss_dssp --T---------TSCEEEEEEESS-------------CCSCEEEEEEETTT--E-EEEEETTTEEEEEECSC
T ss_pred --C---------CCCEEEEEECCC-------------CCCCEEEEEEECCC--C-EEEEECCCEEEEEEEEE
T ss_conf --9---------999999996888-------------88988379990899--1-99991899699987220
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.94 E-value=0.00059 Score=40.83 Aligned_cols=13 Identities=0% Similarity=-0.186 Sum_probs=5.4
Q ss_pred EEEEEEECCCCEE
Q ss_conf 8999990399989
Q 000736 78 ITAFDYLMEKEAL 90 (1323)
Q Consensus 78 V~~i~~spd~~~L 90 (1323)
+.++++.++|...
T Consensus 16 P~~vavd~dG~i~ 28 (260)
T d1rwia_ 16 PSGVAVDSAGNVY 28 (260)
T ss_dssp EEEEEECTTCCEE
T ss_pred CCEEEECCCCCEE
T ss_conf 7889996999999
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.86 E-value=0.00078 Score=39.93 Aligned_cols=219 Identities=13% Similarity=0.067 Sum_probs=95.1
Q ss_pred EEEEEECCCCEEEEEEC-CCCEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEE
Q ss_conf 57966258989999937-97289982244334333112022222222357999978999990399989999689959999
Q 000736 24 QFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLH 102 (1323)
Q Consensus 24 ~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~i~~spd~~~La~as~dG~I~lw 102 (1323)
.+..||.+.+.||++.- .+.|+.|++ .+++. .+.. + ...+.++.+.+++..+ +++.+| |.++
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~--~~g~~--~~~~---------~--~~~~~~i~~~~dg~l~-va~~~g-l~~~ 83 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHL--ASGRK--TVHA---------L--PFMGSALAKISDSKQL-IASDDG-LFLR 83 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEET--TTTEE--EEEE---------C--SSCEEEEEEEETTEEE-EEETTE-EEEE
T ss_pred ECCEEECCCCEEEEEECCCCEEEEEEC--CCCEE--EEEE---------C--CCCCEEEEEECCCCEE-EEEECC-CEEE
T ss_conf 587598999999999878999999989--98959--9998---------9--9981798996599889-997376-3895
Q ss_pred ECCCCEEEEECEEC-----CCEEEEEECCCCCEEEEEECCC----CEEEEE-ECCCEEEEEEECCCCCCCEECCCCCCCC
Q ss_conf 68999199910035-----9599999937899699996996----499994-0472101232034679740014762468
Q 000736 103 SVDGNATEVVGRVE-----GGVRFISPSPDGDLLGVTTGFG----QILVMT-HDWDLLYENPLEELAEGFDVHEPELSSS 172 (1323)
Q Consensus 103 ~~~~~~~e~vg~~~-----~~I~~~awSPDG~~LA~~s~d~----tI~l~t-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~ 172 (1323)
+..+++++...... ..++.+...|+|.+.+...... .-.++. .+.. +.... ...
T Consensus 84 d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~-~~~~~-~~~-------------- 147 (295)
T d2ghsa1 84 DTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK-VTKLF-ADI-------------- 147 (295)
T ss_dssp ETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE-EEEEE-EEE--------------
T ss_pred ECCCCEEEEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCCCCCEEEEEECCCC-EEEEE-ECC--------------
T ss_conf 04645135786640478766101357979999988742643133330576622996-89986-506--------------
Q ss_pred CCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECC--CCCE------EEEECCCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 99857899906885799922554455889889999799--9936------664156798545899936999699996289
Q 000736 173 FSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD--SGTL------QASSELKAFMGAVLEWMPSGANIAAVYDRK 244 (1323)
Q Consensus 173 d~~v~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~--~G~l------~~t~e~~~g~~~slawsPdG~lIAs~~~d~ 244 (1323)
.....++|++|++.+- ++. +..+.|..++.+ .+.. ........+....++.-++|++..+.-.
T Consensus 148 -~~~Ng~~~s~d~~~l~-~~d-----t~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~-- 218 (295)
T d2ghsa1 148 -SIPNSICFSPDGTTGY-FVD-----TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG-- 218 (295)
T ss_dssp -SSEEEEEECTTSCEEE-EEE-----TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET--
T ss_pred -CCCCEEEECCCCCEEE-EEE-----CCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCEEEEEEC--
T ss_conf -8764024658776689-851-----5663246764535555324535788416755566632678699998953207--
Q ss_pred CCCCCCEEEEEECCCEEEEEEEECCCCCCCEEEEEEC-CCCCEEEEEE
Q ss_conf 9999993999917980587999406887758999994-5987258997
Q 000736 245 SENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWN-CMSDLLAAVV 291 (1323)
Q Consensus 245 ~~~~~~~V~l~e~nGl~~~ef~l~~~~~~~V~~laWS-pDg~~LA~~~ 291 (1323)
...|..|+.+|....++.+|. ..+.+++|- ||.+.|-+.+
T Consensus 219 ----~g~V~~~dp~G~~~~~i~lP~---~~~T~~~FGG~d~~~LyvTt 259 (295)
T d2ghsa1 219 ----EGAVDRYDTDGNHIARYEVPG---KQTTCPAFIGPDASRLLVTS 259 (295)
T ss_dssp ----TTEEEEECTTCCEEEEEECSC---SBEEEEEEESTTSCEEEEEE
T ss_pred ----CCCEEEECCCCCEEEEECCCC---CCEEEEEEECCCCCEEEEEE
T ss_conf ----884688569992866863899---85279898289999999997
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.73 E-value=0.00096 Score=39.30 Aligned_cols=54 Identities=17% Similarity=-0.060 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHCC----C----------HHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 999999999999985995899999999509----9----------99999999971499999999985
Q 000736 1049 VAKLAQELCEELQALGKPGEAAKIALDYCG----D----------VTNGISLLIDARDWEEALRVAFM 1102 (1323)
Q Consensus 1049 ~~~l~~~lA~~L~~~~~~~eAa~i~~~y~~----d----------~e~Ai~~~i~~~~w~eA~rLa~~ 1102 (1323)
....+..+|..+...|+|.+|..+|.+-+. . .-.++.++...+.+..|.+...+
T Consensus 157 ~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~ 224 (290)
T d1qqea_ 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE 224 (290)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 34688999999998173999999999999868133245556999999999999984659999999999
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.98 E-value=0.004 Score=34.89 Aligned_cols=122 Identities=14% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH--
Q ss_conf 999988731137899999999669999999999990999999999833189978999999999999998599589999--
Q 000736 994 EAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAK-- 1071 (1323)
Q Consensus 994 ~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~ag~W~~al~lA~~l~~~~~~~~~l~~~lA~~L~~~~~~~eAa~-- 1071 (1323)
...|+.+++.+.|+.|.++|...+++++++.+|++.++|+.++..+++.+ + .++...+...|.+..+..-|..
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~~d~~rl~~~~v~l~~~~~avd~~~k~~-~----~~~~k~~~~~l~~~~e~~la~i~~ 92 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN-S----TRTWKEVCFACVDGKEFRLAQMCG 92 (336)
T ss_dssp -----------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHT-C----HHHHHHHHHHHHHTTCHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHCC-C----HHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 99999998787799999999867899999999970315999999998808-8----999999999997272878999999
Q ss_pred --HHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHH-HHHHHHHHHH
Q ss_conf --9999509999999999971499999999985187105889-9898999999
Q 000736 1072 --IALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITK-VKHASLECAS 1121 (1323)
Q Consensus 1072 --i~~~y~~d~e~Ai~~~i~~~~w~eA~rLa~~h~~~dLie~-v~~al~e~~~ 1121 (1323)
+..+ .......|.+|-+.+.|++.+.+....-..+--.. +..-+...+.
T Consensus 93 ~~~~~~-~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lya 144 (336)
T d1b89a_ 93 LHIVVH-ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS 144 (336)
T ss_dssp TTTTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHHCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 875357-8878999999987698599999999997577444679999999999
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.84 E-value=0.011 Score=31.74 Aligned_cols=17 Identities=18% Similarity=0.153 Sum_probs=9.5
Q ss_pred HHHHCCCHHHHHHHHHH
Q ss_conf 99810239999999875
Q 000736 715 NALIQGRFRDALVMVRR 731 (1323)
Q Consensus 715 ~~l~~~~y~~Af~~~R~ 731 (1323)
.....++|.+|..++++
T Consensus 8 ~~~~~G~~~~A~~~~~~ 24 (388)
T d1w3ba_ 8 REYQAGDFEAAERHCMQ 24 (388)
T ss_dssp HHHHHTCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHH
T ss_conf 99986999999999999
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.56 E-value=0.017 Score=30.42 Aligned_cols=63 Identities=14% Similarity=0.040 Sum_probs=24.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHH
Q ss_conf 899999999669999999999990999999999833189978999999999999998-5995899999999
Q 000736 1006 FEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQA-LGKPGEAAKIALD 1075 (1323)
Q Consensus 1006 ~~eAa~~y~~ag~~~kAl~~y~~ag~W~~al~lA~~l~~~~~~~~~l~~~lA~~L~~-~~~~~eAa~i~~~ 1075 (1323)
|.+++.+|.+.|++++|+++|.. ++.+....+ ...........+++.+.. .+++.+|...|.+
T Consensus 80 ~~~~g~~y~~~~~~~~A~~~~~~------a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 143 (290)
T d1qqea_ 80 YVEAYKCFKSGGNSVNAVDSLEN------AIQIFTHRG-QFRRGANFKFELGEILENDLHDYAKAIDCYEL 143 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH------HHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHH------HHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999980885888999997------667765325-32058999999888676478789999889999
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.25 E-value=0.025 Score=29.19 Aligned_cols=137 Identities=9% Similarity=-0.012 Sum_probs=58.9
Q ss_pred EEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEC
Q ss_conf 89990688579992255445588988999979999366641567985458999369996999962899999993999917
Q 000736 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER 257 (1323)
Q Consensus 178 ~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~g~~~slawsPdG~lIAs~~~d~~~~~~~~V~l~e~ 257 (1323)
...|.++...|-.+- ...++|..|+..+|+.. ... .+..+.++++.++|++++++. ..+..++.
T Consensus 22 gp~wd~~~~~l~wvD------i~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va~~--------~gl~~~d~ 85 (295)
T d2ghsa1 22 GPTFDPASGTAWWFN------ILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIASD--------DGLFLRDT 85 (295)
T ss_dssp EEEEETTTTEEEEEE------GGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEET--------TEEEEEET
T ss_pred CCEEECCCCEEEEEE------CCCCEEEEEECCCCEEE-EEE-CCCCCEEEEEECCCCEEEEEE--------CCCEEEEC
T ss_conf 875989999999998------78999999989989599-998-999817989965998899973--------76389504
Q ss_pred CCEEEEEEEECCC--CCCCEEEEEECCCCCEEEEEECCCC-CCEEEEEEEECCEEEEEEEEEEECCCCEEEEECCCCCC
Q ss_conf 9805879994068--8775899999459872589971688-77499999207756777699982598399999159992
Q 000736 258 NGLERSSFDINEQ--IDSTVELLKWNCMSDLLAAVVRFEE-YDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPL 333 (1323)
Q Consensus 258 nGl~~~ef~l~~~--~~~~V~~laWSpDg~~LA~~~~d~~-~~~VqlW~~~n~~wyLkqel~~~~~~~~~v~W~p~~~~ 333 (1323)
.+.....+.-... ....++.+...|+|.+......... ...-.+|...+... +. +.........+.|++++..
T Consensus 86 ~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~--~~-~~~~~~~~Ng~~~s~d~~~ 161 (295)
T d2ghsa1 86 ATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKV--TK-LFADISIPNSICFSPDGTT 161 (295)
T ss_dssp TTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEE--EE-EEEEESSEEEEEECTTSCE
T ss_pred CCCEEEEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCCCCCEEEEEECCCCE--EE-EEECCCCCCEEEECCCCCE
T ss_conf 6451357866404787661013579799999887426431333305766229968--99-8650687640246587766
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.29 E-value=0.058 Score=26.56 Aligned_cols=17 Identities=6% Similarity=-0.089 Sum_probs=10.8
Q ss_pred HHHHCCCHHHHHHHHHH
Q ss_conf 99810239999999875
Q 000736 715 NALIQGRFRDALVMVRR 731 (1323)
Q Consensus 715 ~~l~~~~y~~Af~~~R~ 731 (1323)
-+...++|.+|....++
T Consensus 42 ~~~~~~~~~~A~~~~~~ 58 (388)
T d1w3ba_ 42 IHFQCRRLDRSAHFSTL 58 (388)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHH
T ss_conf 99986999999999999
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.75 E-value=0.081 Score=25.54 Aligned_cols=23 Identities=17% Similarity=0.017 Sum_probs=8.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999999985995899999999
Q 000736 1053 AQELCEELQALGKPGEAAKIALD 1075 (1323)
Q Consensus 1053 ~~~lA~~L~~~~~~~eAa~i~~~ 1075 (1323)
...+|..+...|++.+|...|.+
T Consensus 209 ~~~lg~~~~~~g~~~~A~~~~~~ 231 (323)
T d1fcha_ 209 WNKLGATLANGNQSEEAVAAYRR 231 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 01333012211110137888778
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.47 E-value=0.094 Score=25.09 Aligned_cols=83 Identities=14% Similarity=0.053 Sum_probs=32.2
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHCCC-----H---HHHHHHHHHHCCHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999887311378999999996699-----9---9999999990999999999833-189978999999999999998
Q 000736 992 VLEAWADHLSDVKCFEDAATTYFCCSS-----L---EKAMKAYRASGNWSGVLTVAGL-LKLGKDEVAKLAQELCEELQA 1062 (1323)
Q Consensus 992 i~~~~A~~L~~~~~~~eAa~~y~~ag~-----~---~kAl~~y~~ag~W~~al~lA~~-l~~~~~~~~~l~~~lA~~L~~ 1062 (1323)
++...|..+...+++++|...|..+-. . -....+|...|++.+|+....+ +.+.|.. ......+|..+..
T Consensus 174 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~ 252 (323)
T d1fcha_ 174 VQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY-IRSRYNLGISCIN 252 (323)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHH
T ss_conf 110368888888877550021112222222221110133301221111013788877899884324-9999999999998
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 5995899999999
Q 000736 1063 LGKPGEAAKIALD 1075 (1323)
Q Consensus 1063 ~~~~~eAa~i~~~ 1075 (1323)
.|+|.+|...|.+
T Consensus 253 ~g~~~~A~~~~~~ 265 (323)
T d1fcha_ 253 LGAHREAVEHFLE 265 (323)
T ss_dssp HTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
T ss_conf 7899999999999
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.23 E-value=0.1 Score=24.75 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=38.7
Q ss_pred CCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEC---------EECCCEEEEEECCC
Q ss_conf 97899999039998999968995999968999199910---------03595999999378
Q 000736 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVG---------RVEGGVRFISPSPD 127 (1323)
Q Consensus 76 ~~V~~i~~spd~~~La~as~dG~I~lw~~~~~~~e~vg---------~~~~~I~~~awSPD 127 (1323)
+.+++|+|.||++.|++--..|.|.+++..++....+. .-++|...+++.||
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCCEEEEEECCCEEEEEEECCCEEEEEECCCCCEEECCCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 9843899928990999993488799998999967561368752003688874233796799
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.01 E-value=0.12 Score=24.45 Aligned_cols=26 Identities=4% Similarity=0.010 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99999999887311378999999996
Q 000736 990 EQVLEAWADHLSDVKCFEDAATTYFC 1015 (1323)
Q Consensus 990 ~~i~~~~A~~L~~~~~~~eAa~~y~~ 1015 (1323)
..++..|+.++...++++.|-.+|.+
T Consensus 134 ~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 134 TLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999999982786889999999
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.76 E-value=0.47 Score=20.11 Aligned_cols=51 Identities=20% Similarity=0.022 Sum_probs=21.3
Q ss_pred HHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 9999996699999999999909999999998331899789999999999999985995899999
Q 000736 1009 AATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKI 1072 (1323)
Q Consensus 1009 Aa~~y~~ag~~~kAl~~y~~ag~W~~al~lA~~l~~~~~~~~~l~~~lA~~L~~~~~~~eAa~i 1072 (1323)
-|.+|...|++++|+++|.++ +.+ +|.. ......++..+..+|+|.+|..-
T Consensus 42 lG~~~~~~g~~~~A~~~~~kA------l~l------dp~~-~~a~~~~g~~~~~~g~~~~A~~~ 92 (192)
T d1hh8a_ 42 IGCMYTILKNMTEAEKAFTRS------INR------DKHL-AVAYFQRGMLYYQTEKYDLAIKD 92 (192)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH------HHH------CTTC-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHH------HHH------HHHH-HHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 999999858914678789999------998------5523-46678899999854249999999
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.07 E-value=0.57 Score=19.48 Aligned_cols=25 Identities=8% Similarity=0.054 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9999999999985995899999999
Q 000736 1051 KLAQELCEELQALGKPGEAAKIALD 1075 (1323)
Q Consensus 1051 ~l~~~lA~~L~~~~~~~eAa~i~~~ 1075 (1323)
.+....++.+...|++..|-.+|.+
T Consensus 204 ~~w~~y~~~~~~~g~~~~aR~~fe~ 228 (308)
T d2onda1 204 EYVLAYIDYLSHLNEDNNTRVLFER 228 (308)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 8999999999986986899999999
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.85 E-value=0.65 Score=19.09 Aligned_cols=20 Identities=10% Similarity=0.012 Sum_probs=8.8
Q ss_pred CCHHHHHCCHHHHHHHHHHC
Q ss_conf 30878701999999999980
Q 000736 938 YTIDLRLQRFENALKHIVSM 957 (1323)
Q Consensus 938 ~~Id~~L~rye~Al~~l~~~ 957 (1323)
+.+....+++++|+..+.++
T Consensus 151 ~~~~~~~~~~~~Al~~~~~~ 170 (334)
T d1dcea1 151 FVAAQAAVAPAEELAFTDSL 170 (334)
T ss_dssp HHHHHTCCCHHHHHHHHHTT
T ss_pred HHHHHHCCCCHHHHHHHHHH
T ss_conf 99987445528999999998
|