Citrus Sinensis ID: 000739

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320--
MGRRKQSRPHRSGGVTLENNNTTESESNKQKPHGSEQPEKEELADVDHPFFVEVNRTCWLLDEHLDISEIVLTDLKLREEFSGFIISEDFYQVSRYTLRLHVCHVNEFIGRIKLGHWPLLSSNDVTLEFVEKCMEEEMETCKIMLSGSFDAPDEGITGLVHLASMEFLTLRPTLGITFSEDMSSLRVRVEILKSAFDACESLLENSRKTWKKSMINVMSWLRPEVLTSEARYGVSKSMEMDVELMTRTKNDVSASQKHASFDVARFYEAIKRSKAEPMLEEDLPDLLPLLRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEILPMVANCATELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLSDLSENGFNGDRKSDCCVSSSSFDDASLITVCENLKQKYLSGFSVKLSVAQQEFRKSYMQVCNALDDREKQYSAWWLEALHHAEGNKDFSAELIRKIEEAISGSLNKSRALRTASRYRSISGLTYHIQSSLDQLEASRKTLLDRLLEIDQTMEKPKEEDMDRMRHCRICYGVGDGPICVHCELDESFQDYEARLFRLKKSQGDIASAEEAVDLQKKNSSLNRFYWYLSQPNKNSTSSSVGNEEIKRRDVRETVVVSKSPSELEVILGVIKNYCKTQLGREAISASSKQLHILEAMRKEYANARSLATAQAQFLRAHDEIRMATTRLHLKEDDNDTSVDALSPDELASASVTNSSEKFISMTLLSQVKGKLRYLKVSTECF
cccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccHHHHHHHccccccccccEEEEEcccccccEEEEEEEEEccccccccccccccccccccHHHHHHHHHHcccccEEEEEEEcccccccccccHHHHHHHHccccccccccccccccccHHHHcHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccHHHHHccccccccHHHHHHHcccccccHHHccccccHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccHHHHHcccccEEEEcccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccHHHHHHHccccccccccEEEccHHHHHHHHHHHHHHccccccEEEEEEccccccccccccccHHHHccccEEEEcHHHHHHHHccccccccccHHHHHcccccccccccccEEEEEEEEEcccccccccHHHHHHHHHHHccccEEEEEccccccccccHHHHHHHccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccccccccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHcHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccccccccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccccccccccccccccccccccHHHHHccccccEEcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHcccHHHHHHHHHHHHccccccccHHHccc
ccccccccccccEEEEEccccccccccccccccccccccccccccccccEEEEEEcccccccccccHHHHHHHcccccccccccEccHHHccccccEEEEEEEccccHcccEEcccccEEccccEEEEEEEEcccccccccEEEEEEEcccccccccEEEEHHHccEEEEccEEEEEcccccccEEEEEEEHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccHHcccHHccccccccccccccccccccccccHHHHccccHHHHHHHHcccccccccHHHcHHHcHHHHHHHHHHHHHHHHHHccccccccccHHcccccccccccccccccccEEEccccccEEcccccccccccccEcccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEHccccccccccccccEEEEcccccccccccccHHHcccHHHHHHHcccccccHHHccccccHHHHHHHHHHHHHHcccccccccEEEEEcHHHHHHHHHHHHHHccccccEEEEEEccHHHHHHHHcccccHHHccccEEEEEHHHHHHHccccccccccccccccccccccccccHHHHHHEHEEEEHHHHHcccHHHHHHHHHHHHHcccEEEEcccHHHccHHHHHHHHHHHcccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHccccccccccccccccccHcHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccccccccEEEcccccccccHHHHHHcccccccccccccccccccccccHcccccccccccccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHcccccccccccccEEEEEcHHHHHHHHHHHHHHEccccccEEEHHHHHHHHHccccHcccHHHEEcccccccccccccHHccccccccEEEEEccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHccHEEEEEEEEcc
mgrrkqsrphrsggvtlennnttesesnkqkphgseqpekeeladvdhpfFVEVNRTCWLLDEHLDISEIVLTDLKLREEFsgfiisedfyQVSRYTLRLHVCHVNEFIGriklghwpllssndvTLEFVEKCMEEEMETCKIMlsgsfdapdegitGLVHLASMEfltlrptlgitfsedmsSLRVRVEILKSAFDACESLLENSRKTWKKSMINVMSWLRPEVLTSEARYGVSKSMEMDVELMTRTKNdvsasqkhasfDVARFYEAIKrskaepmleedlpdllpllrpyQRRAAYWMVQRekgdsassserersqffsplcmpmdfldtystlfynpfsgslslspdytssyvfggilademglGKTVELLACIFAhrkpasddsifidtAVQVTDDQKVNLRRLKRERVECICGAvsesrkykglwvqcdicdawqhadcvgysprgkkrrstfelkkhtrkkdmtnivVRDGEHICQWCDELieatdspvatgatlivcpapilaqwdaeitrhtrpgslktciyegarnsslsdtsiMDISELVGADIVLTTYDVLKedlshdsdrhegdRRFMRFqkrypviptlLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRwcitgtpiqRKLDDLYGLLRFlksspfsisRWWIEVirdpyengdvgamEFTHKFFKEIMCrsskvhvsdelqlppqeecvswltfspieehfyqsQHETCVGYAREVIQRLKDNilkrnvpghassdalynpIITHAEAAKLLNSLLKLRqacchpqvgssglrslqqsplsMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEhsedfrldpllnihlhhnLTEILPMVANCATelsqneqhfpgcsekafkIHSIETCDENARKCQrvsreensdftdaedpsghlsdlsengfngdrksdccvssssfddasLITVCENLKQKYLSGFSVKLSVAQQEFRKSYMQVCNALDDREKQYSAWWLEALHHAEGNKDFSAELIRKIEEAISGSLNKSRALRTASRYRSISGLTYHIQSSLDQLEASRKTLLDRLLEIDqtmekpkeedmDRMRHCricygvgdgpicvhceldeSFQDYEARLFRLKKSQGDIASAEEAVDLQKKNSSLNRFYWYLsqpnknstsssvgneeikrrdVRETVVVSKSPSELEVILGVIKNYCKTQLGREAISASSKQLHILEAMRKEYANARSLATAQAQFLRAHDEIRMATTRLHlkeddndtsvdalspdelasasvtnsSEKFISMTLLSQVKGKLRYLKVSTECF
mgrrkqsrphrsggvtlennnttesesnkqkphgseqPEKEELADVDHPFFVEVNRTCWLLDEHLDISEIVLTDLKLREEFSGFIISEDFYQVSRYTLRLHVCHVNEFIGRIKLGHWPLLSSNDVTLEFVEKCMEEEMETCKIMLSGSFDAPDEGITGLVHLASMEFLTLRPTLGITFSEDMSSLRVRVEILKSAFDACESLLENSRKTWKKSMINVMSWLRPEVLTSEARYGVSKSMEMDVELMTRTKndvsasqkhasfdvARFYEAIKRskaepmleedlpdllpLLRPYQRRAAYWMVQRekgdsassserERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIdtavqvtddqkvnlrrlkrervecicgavsesrkykglWVQCDICDAWQHADcvgysprgkkrrstfelkkhtrkkdmtnivvrDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITrhtrpgslktcIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLkedlshdsdrhegdrrfmrfqkrypviptLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLksspfsisrwWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGssglrslqqsplSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEILPMVANCATELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSREENsdftdaedpsghlsdlsengfnGDRKSDCCVSSSSFDDASLITVCENLKQKYLSGFSVKLSVAQQEFRKSYMQVCNALDDREKQYSAWWLEALHHAEGNKDFSAELIRKIEEAisgslnksralrTASRYRSISGLTYHIQSSLDQLEASRKTLLDRLLEIdqtmekpkeedmdRMRHCRICYGVGDGPICVHCELDESFQDYEARLFRLKKSQGDIASAEEAVDLQKKNSSLNRFYWYlsqpnknstsssvgneeikrrdvretvvvskspselevILGVIKNYCKTQLGREAISASSKQLHILEAMRKEYANARSLATAQAQFLRAHDEIRMATTRLHLKEDDNDTSVDALSPDELAsasvtnssekfismtllsqvkgklrylkvstecf
MGRRKQSRPHRSGGVTLennnttesesnKQKPHGSEQPEKEELADVDHPFFVEVNRTCWLLDEHLDISEIVLTDLKLREEFSGFIISEDFYQVSRYTLRLHVCHVNEFIGRIKLGHWPLLSSNDVTLEFVekcmeeemetckIMLSGSFDAPDEGITGLVHLASMEFLTLRPTLGITFSEDMSSLRVRVEILKSAFDACESLLENSRKTWKKSMINVMSWLRPEVLTSEARYGVSKSMEMDVELMTRTKNDVSASQKHASFDVARFYEAIKRSKAEPMleedlpdllpllRPYQRRAAYWMVQREKGDsassserersqffsPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEILPMVANCATELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLSDLSENGFNGDRKsdccvssssfddasLITVCENLKQKYLSGFSVKLSVAQQEFRKSYMQVCNALDDREKQYSAWWLEALHHAEGNKDFSAELIRKIEEAISGSLNKSRALRTASRYRSISGLTYHIQSSLDQLEASRKTLLDRLLEIDQTMEKPKEEDMDRMRHCRICYGVGDGPICVHCELDESFQDYEARLFRLKKSQGDIASAEEAVDLQKKNSSLNRFYWYLSQPNKNSTSSSVGNEEIKRRDVRETVVVSKSPSELEVILGVIKNYCKTQLGREAISASSKQLHILEAMRKEYANARSLATAQAQFLRAHDEIRMATTRLHLKEDDNDTSVDALSPDELASASVTNSSEKFISMTLLSQVKGKLRYLKVSTECF
*********************************************VDHPFFVEVNRTCWLLDEHLDISEIVLTDLKLREEFSGFIISEDFYQVSRYTLRLHVCHVNEFIGRIKLGHWPLLSSNDVTLEFVEKCMEEEMETCKIMLSGSFDAPDEGITGLVHLASMEFLTLRPTLGITFSEDMSSLRVRVEILKSAFDACESLLENSRKTWKKSMINVMSWLRPEVLTSEARYG***************************FDVARFYEAI************LPDLLPLLRPYQRRAAYWMV*****************FFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYS*******************DMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKED************RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVG***********LSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEILPMVANCATELSQNEQHFPGCSEKAFKIHSIETC********************************************CV***SFDDASLITVCENLKQKYLSGFSVKLSVAQQEFRKSYMQVCNALDD*************************************************YRSISGLTYHIQ************LLDRL*****************MRHCRICYGVGDGPICVHCELDESFQDYEARLFRLK*********************LNRFYWYL*********************************ELEVILGVIKNYCKTQLGREAISASSKQLHILEAMRKEYANARSLATAQAQFLRAHDEIR*************************************ISMTLLSQVKGKLRYLK******
************************************************PFFVEVNRTCWLLDEHLDISEIVLTDLKLREEFSGFIISEDFYQVSRYTLRLHVCHVNEFIGRIKLGHWPLLSSNDVTLEFVEKCMEEEMETCKIMLSGSFDAPDEGITGLVHLASMEFLTLRPTLGITFSEDMSSLRVRVEILKSAFD*******************************************************************RFYE*******************PLLRPYQRRAAYWMV*****************FFSPLCMPMDFLDTYSTLFYNPFSGSLSLSP*********GILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELK**********************************ATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHD*******************IPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRL**********************ITHAEAAKLLNSLLKLRQACCHPQVGS***************ILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEILPM*****************************************************D****L**LSENGFNGDRKSDCCVSSSSFDDASLITVCENLKQKYLSGFSVKLSVAQQ*****************KQYSAWWLEALHHAEGNKDFSAELIRKIEEAIS************SRYRSISGLTYHIQSSLDQLEASRKTLLDRL******************RHCRICYGVGDGPICVHCELDESFQDYEARLFRLKKSQG*********************************************************SELEVILGVIKN***************KQLHILEAMRKEYANARSLATAQAQFLRAHDEIRMATTRL************ALSPDELASASVTNSSEKFISMTLLSQVKGKLRYLKVSTECF
************GGVTLENN*********************ELADVDHPFFVEVNRTCWLLDEHLDISEIVLTDLKLREEFSGFIISEDFYQVSRYTLRLHVCHVNEFIGRIKLGHWPLLSSNDVTLEFVEKCMEEEMETCKIMLSGSFDAPDEGITGLVHLASMEFLTLRPTLGITFSEDMSSLRVRVEILKSAFDACESLLENSRKTWKKSMINVMSWLRPEVLTSEARYGVSKSMEMDVELMTRT*********HASFDVARFYEAIKRSKAEPMLEEDLPDLLPLLRPYQRRAAYWMVQ***************QFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEILPMVANCATELSQNEQHFPGCSEKAFKIHSIETCDE*************************LSDLSENGFNGDRKSDCCVSSSSFDDASLITVCENLKQKYLSGFSVKLSVAQQEFRKSYMQVCNALDDREKQYSAWWLEALHHAEGNKDFSAELIRKIEEAISGSLNKSRALRTASRYRSISGLTYHIQSSLDQLEASRKTLLDRLLEIDQTMEKPKEEDMDRMRHCRICYGVGDGPICVHCELDESFQDYEARLFRLKKSQGDIASAEEAVDLQKKNSSLNRFYWYLSQPN**************RRDVRETVVVSKSPSELEVILGVIKNYCKTQLGREAISASSKQLHILEAMRKEYANARSLATAQAQFLRAHDEIRMATTRLHLKEDDNDTSVDALSPDELASASVTNSSEKFISMTLLSQVKGKLRYLKVSTECF
********************************************DVDHPFFVEVNRTCWLLDEHLDISEIVLTDLKLREEFSGFIISEDFYQVSRYTLRLHVCHVNEFIGRIKLGHWPLLSSNDVTLEFVEKCMEEEMETCKIMLSGSFDAPDEGITGLVHLASMEFLTLRPTLGITFSEDMSSLRVRVEILKSAFDACESLLENSRKTWKKSMINVMSWLRPEVLTSEARYGVSKSMEMDVELMTRT***VSASQ*HASFDVARFYEAIKRSKAEPMLEEDLPDLLPLLRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAHRK****************************ERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHD*******RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEILPMVANCATELSQNE*HFPGCSEKAFKIHSI*TCDEN*R*CQ*V***********************************VSSSSFDDASLITVCENLKQKYLSGFSVKLSVAQQEFRKSYMQVCNALDDREKQYSAWWLEALHHAEGNKDFSAELIRKIEEAISG******ALRTASRYRSISGLTYHIQSSLDQLEASRKTLLDRLLEIDQTMEKPKEEDMDRMRHCRICYGVGDGPICVHCELDESFQDYEARLFRLKKSQGDIASAEEAVDLQKKNSSLNRFYWYLSQP***************RRDVRETVVVSKSPSELEVILGVIKNYCKTQLGREAISASSKQLHILEAMRKEYANARSLATAQAQFLRAHDEIRMATTRLHLKEDDNDTSVDALSPDELASASVTNSSEKFISMTLLSQVKGKLRYLKVSTECF
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGRRKQSRPHRSGGVTLENNNTTESESNKQKPHGSEQPEKEELADVDHPFFVEVNRTCWLLDEHLDISEIVLTDLKLREEFSGFIISEDFYQVSRYTLRLHVCHVNEFIGRIKLGHWPLLSSNDVTLEFVEKCMEEEMETCKIMLSGSFDAPDEGITGLVHLASMEFLTLRPTLGITFSEDMSSLRVRVEILKSAFDACESLLENSRKTWKKSMINVMSWLRPEVLTSEARYGVSKSMEMDVELMTRTKNDVSASQKHASFDVARFYEAIKRSKAEPMLEEDLPDLLPLLRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEILPMVANCATELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLSDLSENGFNGDRKSDCCVSSSSFDDASLITVCENLKQKYLSGFSVKLSVAQQEFRKSYMQVCNALDDREKQYSAWWLEALHHAEGNKDFSAELIRKIEEAISGSLNKSRALRTASRYRSISGLTYHIQSSxxxxxxxxxxxxxxxxxxxxxMEKPKEEDMDRMRHCRICYGVGDGPICVHCELDESFQDYEARLFRxxxxxxxxxxxxxxxxxxxxxSSLNRFYWYLSQPNKNSTSSSVGNEEIKRRDVRETVVVSKSPSELEVILGVIKNYCKTQLGREAISASSKQLHILEAMRKEYANARSLATAQAQFLRAHDEIRMATTRLHLKEDDNDTSVDALSPDELASASVTNSSEKFISMTLLSQVKGKLRYLKVSTECF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1322 2.2.26 [Sep-21-2011]
Q7TPQ3 1674 E3 ubiquitin-protein liga yes no 0.316 0.250 0.391 4e-87
Q149N8 1683 E3 ubiquitin-protein liga yes no 0.316 0.248 0.391 4e-87
Q9FNI61029 Putative SWI/SNF-related no no 0.183 0.236 0.317 5e-35
Q9FIY71277 Putative SWI/SNF-related no no 0.183 0.190 0.316 1e-32
Q6PCN71003 Helicase-like transcripti no no 0.213 0.281 0.307 7e-31
Q9UTL9 1375 Uncharacterized ATP-depen yes no 0.242 0.232 0.307 7e-29
Q9FF61881 Putative SWI/SNF-related no no 0.205 0.308 0.295 1e-27
Q952161005 Helicase-like transcripti no no 0.185 0.243 0.307 1e-27
Q145271009 Helicase-like transcripti no no 0.180 0.235 0.3 6e-27
Q4PGG51387 DNA repair protein RAD5 O N/A no 0.313 0.299 0.244 3e-26
>sp|Q7TPQ3|SHPRH_MOUSE E3 ubiquitin-protein ligase SHPRH OS=Mus musculus GN=Shprh PE=1 SV=1 Back     alignment and function desciption
 Score =  324 bits (830), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 185/472 (39%), Positives = 250/472 (52%), Gaps = 53/472 (11%)

Query: 413  RVECICGAVSE-SRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMT 471
            R ECICG   +   K +   VQC  C  WQHA CV Y  +  K +  +            
Sbjct: 649  RFECICGEFDQIGHKPR---VQCLKCHLWQHAKCVNYEEKNLKVKPFY------------ 693

Query: 472  NIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIY 531
                      C  C   +E    PV+T ATLI+ P+ I  QW  EI RH R  SL+  +Y
Sbjct: 694  ----------CPHCLVAME----PVSTRATLIISPSSICHQWVDEINRHVRSSSLRVLVY 739

Query: 532  EGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG--DRRFMRFQKRYPV 589
            +G +              L   DIV+ TYDVL+ +L++ +  H    D R +R QKRY  
Sbjct: 740  QGVKKHGFLQPHF-----LAEQDIVIITYDVLRSELNYVNIPHSNSEDGRRLRNQKRYMA 794

Query: 590  IPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLR 649
            IP+ L  + WWRICLDEAQMVE     A EMA RL   +RWCI+GTP+QR L+DL+GL+ 
Sbjct: 795  IPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVV 854

Query: 650  FLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEEC 709
            FL   P+ +  WWI ++  PY   +    +  + F  +IM RS+K  V D++Q+PPQ E 
Sbjct: 855  FLGIEPYCVKHWWIRLLYHPYCKKNP---QHLYSFIAKIMWRSAKKDVIDQIQIPPQTEE 911

Query: 710  VSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEA 769
            + WL FSP+E HFY  QHE C   A   ++++ D  LK +              +     
Sbjct: 912  MHWLHFSPVERHFYHRQHEVCCQDAIVKLRKISDWALKLSS-------------LDRRTV 958

Query: 770  AKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMAL 829
            + +L  LL+LRQACCHPQ        LQ+S ++M+E+L  L  K   E EEA R+LV AL
Sbjct: 959  SSILYPLLRLRQACCHPQAVRGEFLPLQKSTMTMEELLTSLQKKCGTECEEAHRQLVCAL 1018

Query: 830  NGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEIL 881
            NGLAGI +I+   + A  LY+E +   EEH    + D L  +H  HNL E+L
Sbjct: 1019 NGLAGIHIIKGEYALAAELYREVLRSSEEHKGKLKTDSLQRLHATHNLMELL 1070
E3 ubiquitin-protein ligase involved in DNA repair. Upon genotoxic stress, accepts ubiquitin from the UBE2N-UBE2V2 E2 complex and transfers it to 'Lys-164' of PCNA which had been monoubiquitinated by UBE2A/B-RAD18, promoting the formation of non-canonical poly-ubiquitin chains linked through 'Lys-63'.
Mus musculus (taxid: 10090)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q149N8|SHPRH_HUMAN E3 ubiquitin-protein ligase SHPRH OS=Homo sapiens GN=SHPRH PE=1 SV=2 Back     alignment and function description
>sp|Q9FNI6|SM3L2_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1 Back     alignment and function description
>sp|Q9FIY7|SM3L3_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 OS=Arabidopsis thaliana GN=At5g43530 PE=3 SV=1 Back     alignment and function description
>sp|Q6PCN7|HLTF_MOUSE Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1 SV=1 Back     alignment and function description
>sp|Q9UTL9|YIV5_SCHPO Uncharacterized ATP-dependent helicase C144.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC144.05 PE=3 SV=1 Back     alignment and function description
>sp|Q9FF61|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 OS=Arabidopsis thaliana GN=At5g05130 PE=2 SV=1 Back     alignment and function description
>sp|Q95216|HLTF_RABIT Helicase-like transcription factor OS=Oryctolagus cuniculus GN=HLTF PE=1 SV=1 Back     alignment and function description
>sp|Q14527|HLTF_HUMAN Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1 SV=2 Back     alignment and function description
>sp|Q4PGG5|RAD5_USTMA DNA repair protein RAD5 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=RAD5 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1322
2241278881320 chromatin remodeling complex subunit [Po 0.990 0.991 0.678 0.0
359486454 1704 PREDICTED: E3 ubiquitin-protein ligase S 0.984 0.763 0.660 0.0
297736470 1717 unnamed protein product [Vitis vinifera] 0.971 0.747 0.629 0.0
449499151 1520 PREDICTED: LOW QUALITY PROTEIN: E3 ubiqu 0.993 0.864 0.613 0.0
449441236 1520 PREDICTED: E3 ubiquitin-protein ligase S 0.993 0.864 0.613 0.0
357490295 1764 ATP-dependent helicase, putative [Medica 0.984 0.737 0.587 0.0
240254615 1664 RING-finger, DEAD-like helicase, PHD and 0.974 0.774 0.584 0.0
356500801 1600 PREDICTED: E3 ubiquitin-protein ligase S 0.937 0.775 0.599 0.0
297827713 1635 SNF2 domain-containing protein [Arabidop 0.952 0.770 0.582 0.0
255559737 1588 snf2 histone linker phd ring helicase, p 0.629 0.523 0.736 0.0
>gi|224127888|ref|XP_002329202.1| chromatin remodeling complex subunit [Populus trichocarpa] gi|222870983|gb|EEF08114.1| chromatin remodeling complex subunit [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1837 bits (4759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 900/1326 (67%), Positives = 1064/1326 (80%), Gaps = 17/1326 (1%)

Query: 1    MGRRKQSRPHRSGGVTLENNNTTES--ESNKQKPHGSEQPEKEELADVD-HPFFVEVNRT 57
            MGRRKQ+RPHRSGG+ ++NN    +  E   Q+   S   +  EL  +D  P+FVEV R 
Sbjct: 1    MGRRKQARPHRSGGLIIQNNAAASASAELKNQRKASSSDAQPTELVGIDEQPYFVEVERN 60

Query: 58   CWLLDEHLDISEIVLTDLKLREEFSGFIISEDFYQVSRYTLRLHVCHVNE-FIGRIKLGH 116
             W  + H D SE+VL  L LR+E+S F +++ FY  S+Y+LR  V +V +  + RIKLGH
Sbjct: 61   SWASNHHRDASELVLHGLNLRQEYSSFRVTDGFYHDSKYSLRFRVSNVKQSVLSRIKLGH 120

Query: 117  WPLLSSNDVTLEFVEKCM-EEEMETCKIMLSGSFDAPDEGITGLVHLASMEFLTLRPTLG 175
            WP+ SS+D++LE +EK M EE+ E   ++ SGSFD PDEGITGLVHL +MEFLTLRP LG
Sbjct: 121  WPVFSSSDISLELIEKSMVEEDREVESVIFSGSFDGPDEGITGLVHLTNMEFLTLRPVLG 180

Query: 176  ITFSEDMSSLRVRVEILKSAFDACESLLENSRKTWKKSMINVMSWLRPEVLTSEARYGVS 235
            + FSE M+ LR+RVEIL+ AFDACESLLE++R+ WKKSM+NVM+WLRPEV+TSEARY  +
Sbjct: 181  VDFSEKMTPLRMRVEILEKAFDACESLLESTRQIWKKSMMNVMAWLRPEVMTSEARYRHA 240

Query: 236  KSMEMDVELMTRTKNDVSASQKHASFDVARFYEAIKRSKAEPMLEEDLPDLLPLLRPYQR 295
            KS EM+V +     +D S S K A FDVA  YEAIK SK++PMLE+DLPDLLP LRPYQR
Sbjct: 241  KSTEMEVNMAAEIGDDTSNSGKRAQFDVAGLYEAIKPSKSDPMLEDDLPDLLPTLRPYQR 300

Query: 296  RAAYWMVQREKGDSASSSERERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSS 355
            RAA+WMVQ+EKG+S  SS +ERSQFFSPLCMP+DFLDT S +FYNPFSG++S  P+++  
Sbjct: 301  RAAHWMVQQEKGES--SSVKERSQFFSPLCMPVDFLDTCSKMFYNPFSGNVSFHPEFSPP 358

Query: 356  YVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVE 415
            YV GGILADEMGLGKTVELLACI AHRK  SDD   +    Q T +QK+NL+RLKRERVE
Sbjct: 359  YVSGGILADEMGLGKTVELLACILAHRKSTSDDGSVVAPTWQNTGNQKINLKRLKRERVE 418

Query: 416  CICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVV 475
            C+CGAVS+S KY+GLWVQCDICDAWQHADCVGYSPRGKK+ S  + +KH R K   + V 
Sbjct: 419  CVCGAVSDSYKYRGLWVQCDICDAWQHADCVGYSPRGKKKMSVDDEQKH-RNKTTISYVE 477

Query: 476  RDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGAR 535
            RDGEH+CQ C ELIE  D+P+ATGATLIVCPAPIL QW +EITRHTRPGSLKT +YEG R
Sbjct: 478  RDGEHVCQMCSELIEVADTPIATGATLIVCPAPILPQWHSEITRHTRPGSLKTYVYEGVR 537

Query: 536  NSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLT 595
            ++SLS+T ++DI +LV ADIVLTTYDVLKEDL HDSDRH GDR  +RFQKRYPV PT+LT
Sbjct: 538  DTSLSNTFVVDIGQLVNADIVLTTYDVLKEDLLHDSDRHGGDRHILRFQKRYPVTPTILT 597

Query: 596  RIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSP 655
            RIFWWR+CLDEAQMVESNAAAATEMALRL  KHRWCITGTPIQRKLDDLYGLLRFLK+SP
Sbjct: 598  RIFWWRVCLDEAQMVESNAAAATEMALRLSTKHRWCITGTPIQRKLDDLYGLLRFLKASP 657

Query: 656  FSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTF 715
            F++SRWWI+VIRDPYE  D  AMEFTHKFFK+IM RSSK+HV+DELQLPPQEECVSWLTF
Sbjct: 658  FNVSRWWIDVIRDPYERRDADAMEFTHKFFKQIMWRSSKIHVADELQLPPQEECVSWLTF 717

Query: 716  SPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNS 775
            S IE+HFYQ QHETCV YAREVI   KD+++KR VPG  S+DA  +P+ITHAEAAKLLNS
Sbjct: 718  SAIEKHFYQMQHETCVSYAREVIGSFKDDVVKRKVPGCVSTDASTDPLITHAEAAKLLNS 777

Query: 776  LLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGI 835
            LLKLRQACCHPQVGSSGLRSLQQSP++M+EILMV +GK KIEGEEALRKLV+ALN LAGI
Sbjct: 778  LLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVFVGKMKIEGEEALRKLVVALNALAGI 837

Query: 836  ALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEILPMVANCATELSQNE 895
            A++E+N  QAVSLYKEA+A+ EEH EDFRLDPLLNIH+HHNL +IL +V + +TE+  N 
Sbjct: 838  AILEQNFPQAVSLYKEALALSEEHLEDFRLDPLLNIHIHHNLADILALVMDHSTEVPSNG 897

Query: 896  QHFPGCSEKAFKIHSIETCDENARKCQRVSREENSDFT-DAEDPSGHLSDLSENGFNGDR 954
            Q   G SEKA KI+  ETCD N  K Q+ S  E+SDFT DA    G+  DLSEN   G++
Sbjct: 898  QQLHGNSEKASKINKSETCDLNDAKKQKAS-GEDSDFTIDA----GNSLDLSENCSVGNK 952

Query: 955  KSDCC--VSSSSFDDASLITVCENLKQKYLSGFSVKLSVAQQEFRKSYMQVCNALDDREK 1012
            K +    +SS+SF    L T CEN KQKYLS FS KLS AQ +F KSY QVCNA  +R+ 
Sbjct: 953  KGNNNHDMSSTSFSTQYLRTACENFKQKYLSVFSSKLSAAQLDFNKSYTQVCNAFGERKN 1012

Query: 1013 QYSAWWLEALHHAEGNKDFSAELIRKIEEAISGSLNKSRALRTASRYRSISGLTYHIQSS 1072
             ++ WWL+AL+HAE NKD + ELIRKIEEA+SG+LN SR+ R ASR RSI+GL YHI + 
Sbjct: 1013 LHTVWWLDALNHAEQNKDSTGELIRKIEEAVSGTLNNSRSSRIASRLRSITGLKYHIHTH 1072

Query: 1073 LDQLEASRKTLLDRLLEIDQTMEKPKEEDMDRMRHCRICYGVGDGPICVHCELDESFQDY 1132
            LDQLEASR+TLLDR+LEIDQTM  PKEED++R+RHCRIC  + DGP CVHCEL+ESFQ+Y
Sbjct: 1073 LDQLEASRQTLLDRILEIDQTMANPKEEDIERVRHCRICQAIDDGPTCVHCELEESFQEY 1132

Query: 1133 EARLFRLKKSQGD-IASAEEAVDLQKKNSSLNRFYWYLSQPNKNSTSSSVGNEEIKRRDV 1191
            EARLFRL K  G  I SAEEAV+LQK+NS  NR+YW L +  KN   SS  NEE K+R  
Sbjct: 1133 EARLFRLNKLHGGIITSAEEAVNLQKRNSERNRYYWNLDRQKKNLLPSSDFNEESKKRKT 1192

Query: 1192 RETVVVSKSPSELEVILGVIKNYCKTQLGREAISASSKQLHILEAMRKEYANARSLATAQ 1251
             ETV+VSKSPSELEVILGVIK+YCK QL  EA+SA+S Q+HILE MRKEY +ARSLA AQ
Sbjct: 1193 GETVMVSKSPSELEVILGVIKSYCKAQLENEAVSAASLQIHILEGMRKEYGHARSLAVAQ 1252

Query: 1252 AQFLRAHDEIRMATTRLHLKEDDNDTSVDALSPDELASASVTNSSEKFISMTLLSQVKGK 1311
            AQ LRAHDE++MAT RLHL+E++NDTS+DAL  DEL SASV +S+EKF+S+ LLS  KGK
Sbjct: 1253 AQLLRAHDELKMATARLHLRENENDTSMDALGEDELESASVLHSNEKFMSLNLLSHTKGK 1312

Query: 1312 LRYLKV 1317
            LRYLKV
Sbjct: 1313 LRYLKV 1318

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359486454|ref|XP_003633446.1| PREDICTED: E3 ubiquitin-protein ligase SHPRH-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297736470|emb|CBI25341.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449499151|ref|XP_004160739.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase SHPRH-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449441236|ref|XP_004138388.1| PREDICTED: E3 ubiquitin-protein ligase SHPRH-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357490295|ref|XP_003615435.1| ATP-dependent helicase, putative [Medicago truncatula] gi|355516770|gb|AES98393.1| ATP-dependent helicase, putative [Medicago truncatula] Back     alignment and taxonomy information
>gi|240254615|ref|NP_181609.4| RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein [Arabidopsis thaliana] gi|330254782|gb|AEC09876.1| RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356500801|ref|XP_003519219.1| PREDICTED: E3 ubiquitin-protein ligase SHPRH-like [Glycine max] Back     alignment and taxonomy information
>gi|297827713|ref|XP_002881739.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297327578|gb|EFH57998.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255559737|ref|XP_002520888.1| snf2 histone linker phd ring helicase, putative [Ricinus communis] gi|223540019|gb|EEF41597.1| snf2 histone linker phd ring helicase, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1322
TAIR|locus:2064786 1664 AT2G40770 [Arabidopsis thalian 0.704 0.559 0.592 4e-296
UNIPROTKB|E1C615 1682 SHPRH "Uncharacterized protein 0.315 0.247 0.398 1.3e-105
UNIPROTKB|E1C5L6 1682 SHPRH "Uncharacterized protein 0.315 0.247 0.398 1.3e-105
MGI|MGI:1917581 1674 Shprh "SNF2 histone linker PHD 0.284 0.224 0.417 1.3e-103
UNIPROTKB|E2R8G0 1685 SHPRH "Uncharacterized protein 0.284 0.223 0.415 2e-102
UNIPROTKB|Q149N8 1683 SHPRH "E3 ubiquitin-protein li 0.284 0.223 0.412 4.7e-102
RGD|1310342 1701 Shprh "SNF2 histone linker PHD 0.284 0.221 0.397 3.7e-98
UNIPROTKB|K4DI94 1687 SHPRH "SNF2 histone linker PHD 0.284 0.222 0.410 7.9e-98
UNIPROTKB|F1S736 1688 SHPRH "Uncharacterized protein 0.353 0.276 0.375 2.3e-97
UNIPROTKB|E1BLB1 1688 SHPRH "Uncharacterized protein 0.284 0.222 0.422 7e-95
TAIR|locus:2064786 AT2G40770 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2843 (1005.8 bits), Expect = 4.0e-296, P = 4.0e-296
 Identities = 571/963 (59%), Positives = 701/963 (72%)

Query:     1 MGRRKQSRPHRSGG-VTLXXXXXXXXXXXKQKPHGSEQPEKEELADVDHPFFVEVNRTCW 59
             MGRRKQS+P R+ G +T              +  GS     E   D+D P++V +  +  
Sbjct:     1 MGRRKQSKPQRAVGLITPTGSESDRNQLPGDEAEGSGDKNVE---DIDKPYYVNICLSSR 57

Query:    60 LLDE--HLDISEIVLTDLKLREEFSGFIISEDFYQVSR---YTLRLHVCHVNEFIGRIKL 114
             + ++  + D++E+VLT+  +RE            +V      +LR  +C+V  F+ RIKL
Sbjct:    58 VSEQQQNFDLAEVVLTNFSVRERVGSSSTFTKPIEVDHDLDCSLRFRLCNVTNFVDRIKL 117

Query:   115 GHWPLLSSNDVTLEFVXXXXXXXXXXXXIMLSGSFDAPDEGITGLVHLASMEFLTLRPTL 174
             GHWP+LSS+D+TLE V            I  S SFD P EG++GL HLAS++FLTLR   
Sbjct:   118 GHWPVLSSSDITLELVDNKVSDDEVGSVIW-SASFDGPGEGVSGLAHLASIKFLTLRLMP 176

Query:   175 GITFSEDMSSLRVRVEILKSAFDACESLLENSRKTWKKSMINVMSWLRPEVLTSEARYGV 234
             G   +E + S RVRVE+L+ AFDAC+SLLEN+R+ WKKSMI+VMSWLRPEV+TSEARYG 
Sbjct:   177 G---NEGLLSPRVRVEMLQQAFDACDSLLENTRQIWKKSMIHVMSWLRPEVMTSEARYGT 233

Query:   235 SKSMEMDVELMTRTKNDVSASQKHASFDVARFYEAIKRSKAEPMXXXXXXXXXXXXRPYQ 294
               +++ D+E    T+++   S K +SFD A FYEAIK SK + M            RPYQ
Sbjct:   234 RFNVK-DIESSVVTEDETLDSSKQSSFDAAAFYEAIKPSKTDAMLGDDIADLLPELRPYQ 292

Query:   295 RRAAYWMVQREKGDXXXXXXXXXXXXXXPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTS 354
             RRAAYWMVQRE+GD              PL + + FLD+ + +F NPFSG++SL+P+Y S
Sbjct:   293 RRAAYWMVQRERGDPITLGDKEDNQFISPLSISVGFLDSATKMFLNPFSGNISLTPEYFS 352

Query:   355 SYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERV 414
               + GGILADEMGLGKTVELLACIF+HRKPA D+ I +     VTD     LRRLKRERV
Sbjct:   353 PRIQGGILADEMGLGKTVELLACIFSHRKPAEDE-ISVSNGSSVTDVLNAGLRRLKRERV 411

Query:   415 ECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFEL-KKHTRKK---DM 470
             ECICGAVSES KYKG+WVQCD+CDAWQHADCVGYSP+GK ++ +  + +K ++KK   D 
Sbjct:   412 ECICGAVSESHKYKGVWVQCDLCDAWQHADCVGYSPKGKGKKDSQHIDEKASQKKSKKDA 471

Query:   471 TNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCI 530
             T I+VR+GE+ICQ C EL++ T SP++TGATLIVCPAPIL QW +EITRHTR GSL TCI
Sbjct:   472 TEIIVREGEYICQMCSELLQVTASPISTGATLIVCPAPILPQWHSEITRHTRLGSLITCI 531

Query:   531 YEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVI 590
             YEG RN+SLS+  ++DI+EL+ ADIVLTTYDVLKEDL+HD DRH+GDR  +RFQKRYPVI
Sbjct:   532 YEGVRNASLSEEPMIDITELLNADIVLTTYDVLKEDLTHDFDRHDGDRHCLRFQKRYPVI 591

Query:   591 PTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRF 650
             PT LTRIFWWRICLDEAQMVESNAAAATEMALRLY KHRWCITGTPIQRKLDDL+GLL+F
Sbjct:   592 PTPLTRIFWWRICLDEAQMVESNAAAATEMALRLYTKHRWCITGTPIQRKLDDLFGLLKF 651

Query:   651 LKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECV 710
             LK++PF +SRWWIEVIRDPYE  D  AMEFTHKFFK++M RSSKVHV+DELQLPPQEECV
Sbjct:   652 LKANPFDVSRWWIEVIRDPYERRDTKAMEFTHKFFKQVMWRSSKVHVADELQLPPQEECV 711

Query:   711 SWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAA 770
             SWL FS IEEHFY  QH+TCV YAREVI+ LK +ILKR   GH SSD   NP++THAEAA
Sbjct:   712 SWLKFSAIEEHFYSRQHDTCVSYAREVIETLKRDILKR---GHTSSD---NPLVTHAEAA 765

Query:   771 KLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALN 830
             KLLNSLLKLRQACCHPQVGSSGLRSLQQSP++M+EILMVL+ KT+ EGEEALR L++ALN
Sbjct:   766 KLLNSLLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLVKKTQSEGEEALRVLIVALN 825

Query:   831 GLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEILPMVANCATE 890
             G+A IA++++  S+AVSLYKEA+++ EEH+EDFRLDPLLNIH+ HNL EILPM  +   +
Sbjct:   826 GIAAIAMLKQEFSEAVSLYKEALSITEEHAEDFRLDPLLNIHILHNLAEILPMAKSYGGK 885

Query:   891 LSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLSDLSENGF 950
             LS +     G  E   KI   +     A K QR++  E+     +E      +   +NG 
Sbjct:   886 LSAS-----GRPET--KIDVKDDDHHRASKRQRINELESLTHDSSETVHQREAIAPDNGL 938

Query:   951 NGD 953
               D
Sbjct:   939 KKD 941
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0003677 "DNA binding" evidence=IEA
GO:0004386 "helicase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA
UNIPROTKB|E1C615 SHPRH "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1C5L6 SHPRH "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1917581 Shprh "SNF2 histone linker PHD RING helicase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2R8G0 SHPRH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q149N8 SHPRH "E3 ubiquitin-protein ligase SHPRH" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1310342 Shprh "SNF2 histone linker PHD RING helicase, E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|K4DI94 SHPRH "SNF2 histone linker PHD RING helicase, isoform CRA_a" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1S736 SHPRH "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BLB1 SHPRH "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.40.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
CHR938
chromatin remodeling complex subunit (1320 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1322
pfam00176301 pfam00176, SNF2_N, SNF2 family N-terminal domain 1e-38
COG0553866 COG0553, HepA, Superfamily II DNA/RNA helicases, S 5e-14
PLN031421033 PLN03142, PLN03142, Probable chromatin-remodeling 8e-09
smart00487201 smart00487, DEXDc, DEAD-like helicases superfamily 4e-05
smart0024947 smart00249, PHD, PHD zinc finger 3e-04
pfam0062851 pfam00628, PHD, PHD-finger 5e-04
pfam00176301 pfam00176, SNF2_N, SNF2 family N-terminal domain 0.002
>gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain Back     alignment and domain information 
 Score =  146 bits (370), Expect = 1e-38
 Identities = 77/300 (25%), Positives = 118/300 (39%), Gaps = 60/300 (20%)

Query: 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVL 557
            G TL+VCP   L  W  E  +     +L+  +Y G           M    L   D+V+
Sbjct: 48  RGPTLVVCPLSTLHNWLNEFEKW--APALRVVVYHGDGRERSKLRQSM-AKRLDTYDVVI 104

Query: 558 TTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAA 617
           TTY+VL++D    S  ++ +                     W R+ LDEA  ++++ +  
Sbjct: 105 TTYEVLRKDKKLLSLLNKVE---------------------WDRVVLDEAHRLKNSKSKL 143

Query: 618 TEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPY------- 670
            +   +L  ++R  +TGTPIQ  L++L+ LL FL+  PF   + + E    P        
Sbjct: 144 YKALKKLKTRNRLLLTGTPIQNNLEELWALLNFLRPGPFGSFKVFEEWFNIPIANTADNK 203

Query: 671 ----ENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQ 726
               E G  G     HK  K  + R +K  V  E  LPP+ E V +   S  +   Y+  
Sbjct: 204 NKNLEKGKEGINRL-HKLLKPFLLRRTKDDV--EKSLPPKTEHVLYCNLSDEQRKLYK-- 258

Query: 727 HETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHP 786
                       + L      R     A      N  I       LLN +++LR+ C HP
Sbjct: 259 ------------KLLTKR---RLALSFAVEGGEKNVGIAS-----LLNLIMQLRKICNHP 298

This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g. ERCC6, RAD16, RAD5), DNA recombination (e.g. RAD54), and chromatin unwinding (e.g. ISWI) as well as a variety of other proteins with little functional information (e.g. lodestar, ETL1). Length = 301
>gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|214584 smart00249, PHD, PHD zinc finger Back     alignment and domain information
>gnl|CDD|201356 pfam00628, PHD, PHD-finger Back     alignment and domain information
>gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1322
KOG0298 1394 consensus DEAD box-containing helicase-like transc 100.0
KOG0385971 consensus Chromatin remodeling complex WSTF-ISWI, 100.0
KOG0387923 consensus Transcription-coupled repair protein CSB 100.0
KOG03921549 consensus SNF2 family DNA-dependent ATPase domain- 100.0
KOG0384 1373 consensus Chromodomain-helicase DNA-binding protei 100.0
KOG0389941 consensus SNF2 family DNA-dependent ATPase [Chroma 100.0
PLN031421033 Probable chromatin-remodeling complex ATPase chain 100.0
KOG4439901 consensus RNA polymerase II transcription terminat 100.0
KOG1002791 consensus Nucleotide excision repair protein RAD16 100.0
KOG0391 1958 consensus SNF2 family DNA-dependent ATPase [Genera 100.0
KOG03881185 consensus SNF2 family DNA-dependent ATPase [Replic 100.0
KOG03861157 consensus Chromatin remodeling complex SWI/SNF, co 100.0
KOG0390776 consensus DNA repair protein, SNF2 family [Replica 100.0
KOG1001674 consensus Helicase-like transcription factor HLTF/ 100.0
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 100.0
KOG10151567 consensus Transcription regulator XNP/ATRX, DEAD-b 100.0
PF00176299 SNF2_N: SNF2 family N-terminal domain; InterPro: I 100.0
KOG1016 1387 consensus Predicted DNA helicase, DEAD-box superfa 100.0
KOG1000689 consensus Chromatin remodeling protein HARP/SMARCA 100.0
PRK04914956 ATP-dependent helicase HepA; Validated 100.0
KOG0383696 consensus Predicted helicase [General function pre 100.0
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 99.9
PRK13766773 Hef nuclease; Provisional 99.75
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 99.41
PHA02558501 uvsW UvsW helicase; Provisional 99.29
PF04851184 ResIII: Type III restriction enzyme, res subunit; 99.27
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 99.24
smart00487201 DEXDc DEAD-like helicases superfamily. 99.23
KOG1123776 consensus RNA polymerase II transcription initiati 98.89
PRK114481123 hsdR type I restriction enzyme EcoKI subunit R; Pr 98.88
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 98.79
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 98.61
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 98.54
TIGR00643630 recG ATP-dependent DNA helicase RecG. 98.49
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 98.41
PF13872303 AAA_34: P-loop containing NTP hydrolase pore-1 98.34
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 98.24
COG4096875 HsdR Type I site-specific restriction-modification 98.18
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 98.18
PRK01172674 ski2-like helicase; Provisional 98.15
PRK106891147 transcription-repair coupling factor; Provisional 98.14
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 98.14
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 98.12
PRK02362737 ski2-like helicase; Provisional 98.09
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 98.05
PRK00254720 ski2-like helicase; Provisional 98.01
TIGR01389591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 97.99
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 97.97
PRK11057607 ATP-dependent DNA helicase RecQ; Provisional 97.96
PTZ00424401 helicase 45; Provisional 97.93
KOG0354746 consensus DEAD-box like helicase [General function 97.92
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 97.9
COG1204766 Superfamily II helicase [General function predicti 97.89
PTZ00110545 helicase; Provisional 97.88
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 97.84
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 97.78
PRK04537572 ATP-dependent RNA helicase RhlB; Provisional 97.73
PRK11634629 ATP-dependent RNA helicase DeaD; Provisional 97.7
COG1200677 RecG RecG-like helicase [DNA replication, recombin 97.65
PRK09401 1176 reverse gyrase; Reviewed 97.62
PRK05580679 primosome assembly protein PriA; Validated 97.61
KOG02981394 consensus DEAD box-containing helicase-like transc 97.58
KOG0331519 consensus ATP-dependent RNA helicase [RNA processi 97.57
PRK13767876 ATP-dependent helicase; Provisional 97.57
COG1205851 Distinct helicase family with a unique C-terminal 97.57
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 97.56
TIGR03817742 DECH_helic helicase/secretion neighborhood putativ 97.46
COG4889 1518 Predicted helicase [General function prediction on 97.39
TIGR00595505 priA primosomal protein N'. All proteins in this f 97.29
PLN031371195 ATP-dependent DNA helicase; Q4-like; Provisional 97.14
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 97.11
PF07652148 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR 97.03
TIGR03714762 secA2 accessory Sec system translocase SecA2. Memb 96.85
COG11971139 Mfd Transcription-repair coupling factor (superfam 96.84
PRK15483986 type III restriction-modification system StyLTI en 96.8
KOG0350620 consensus DEAD-box ATP-dependent RNA helicase [RNA 96.62
KOG0952 1230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 96.58
PHA02653675 RNA helicase NPH-II; Provisional 96.54
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 96.53
TIGR02621844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 96.17
COG1201814 Lhr Lhr-like helicases [General function predictio 95.93
PRK09200790 preprotein translocase subunit SecA; Reviewed 95.45
PRK14701 1638 reverse gyrase; Provisional 95.38
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 95.08
TIGR00963745 secA preprotein translocase, SecA subunit. The pro 94.78
PF11496297 HDA2-3: Class II histone deacetylase complex subun 94.26
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 94.18
COG0610962 Type I site-specific restriction-modification syst 93.97
PRK09694878 helicase Cas3; Provisional 93.4
KOG0330476 consensus ATP-dependent RNA helicase [RNA processi 93.04
PRK12899970 secA preprotein translocase subunit SecA; Reviewed 92.92
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 92.87
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 92.47
COG1203733 CRISPR-associated helicase Cas3 [Defense mechanism 92.02
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 91.79
TIGR01970819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 91.62
KOG1513 1300 consensus Nuclear helicase MOP-3/SNO (DEAD-box sup 91.54
KOG0338691 consensus ATP-dependent RNA helicase [RNA processi 91.45
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 91.03
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 90.89
PRK11664812 ATP-dependent RNA helicase HrpB; Provisional 90.28
PRK13104896 secA preprotein translocase subunit SecA; Reviewed 90.05
COG0514590 RecQ Superfamily II DNA helicase [DNA replication, 89.89
KOG0947 1248 consensus Cytoplasmic exosomal RNA helicase SKI2, 89.87
COG4098441 comFA Superfamily II DNA/RNA helicase required for 88.49
KOG0335482 consensus ATP-dependent RNA helicase [RNA processi 87.56
PRK13103913 secA preprotein translocase subunit SecA; Reviewed 86.71
COG3587985 Restriction endonuclease [Defense mechanisms] 86.05
KOG1802935 consensus RNA helicase nonsense mRNA reducing fact 86.04
PRK13107908 preprotein translocase subunit SecA; Reviewed 85.7
PRK111311294 ATP-dependent RNA helicase HrpA; Provisional 85.24
KOG0343758 consensus RNA Helicase [RNA processing and modific 85.14
COG45811041 Superfamily II RNA helicase [DNA replication, reco 83.44
KOG1132945 consensus Helicase of the DEAD superfamily [Replic 82.63
PRK12904830 preprotein translocase subunit SecA; Reviewed 82.32
KOG0951 1674 consensus RNA helicase BRR2, DEAD-box superfamily 81.55
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 81.32
KOG0336629 consensus ATP-dependent RNA helicase [RNA processi 80.91
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 80.83
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-95  Score=897.30  Aligned_cols=1099  Identities=26%  Similarity=0.273  Sum_probs=841.3

Q ss_pred             CCCCCeEEEEcCcccccc--CCCchhhhhhccccccccc---cceeeecccccccceEEEEEEccccccccceeccCccc
Q 000739           45 DVDHPFFVEVNRTCWLLD--EHLDISEIVLTDLKLREEF---SGFIISEDFYQVSRYTLRLHVCHVNEFIGRIKLGHWPL  119 (1322)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (1322)
                      +++.|+.++.+-+...+.  +..+..++|++.++..+.+   +++..+-+..++..+  +|+.|++.+||.+++.||||+
T Consensus         3 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~vit~~s~l~r~~~~~t~t~~~~~~~~~~~--~~~~~~~~n~v~~~~~~~~~~   80 (1394)
T KOG0298|consen    3 KKYPLDESMSEDEEYIETWKDLPKNRVIVITKRSPLVRGVLLRTITSHFQIPAAQYG--TLLAYVSDNVVRFYAETYRRN   80 (1394)
T ss_pred             CccchhhhhhhhHHHHHHHHhcCCCceEEEecCChhhhcceeeEEeecccchhhhcc--eeEeecchhHHHHHHhhhccc
Confidence            345566666655443332  4788999999999988776   555555555555555  999999999999999999999


Q ss_pred             ccCCCchHHHHHhhhccccceeeEEEecccCCCCccchhhHhhhhcceEEEeecCCCCcccccccceeeEEeccchhhhh
Q 000739          120 LSSNDVTLEFVEKCMEEEMETCKIMLSGSFDAPDEGITGLVHLASMEFLTLRPTLGITFSEDMSSLRVRVEILKSAFDAC  199 (1322)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~lr~~~~~~~~~~~~~~~~~v~vl~~~~~~~  199 (1322)
                      .|+.|++.+++....+-+ +.+...++-+|.++.++.++.++...+.+++++-+.+   ........+++.-+...++.|
T Consensus        81 ~s~~d~~~~~~~~k~~~~-~~~es~~~~~~~~~~~~~s~~~~~~~~~~l~~ic~~~---Nq~r~t~~l~~~ki~~s~~s~  156 (1394)
T KOG0298|consen   81 NSPMDGTVLCEDNKEVPP-ESPESPTLFSYGKKREVFSDNAVEHKGIELILICIPK---NQNRRTRYLKVRKIRQSSGSC  156 (1394)
T ss_pred             CCccccceeeccccccCC-CCCCcchHHHhcccccccchHHHHhhcchhhhhcccc---cccccchhhhHHHHhccchhh
Confidence            999999999987766666 7888999999999999999999999999887764332   234455688888889999999


Q ss_pred             hhhhhcchHHHHHHHHHHHhhcCCCcCCcccccccccccchhhhcccccccCccccccCCCCCHHHHHHHhccCCCCCCc
Q 000739          200 ESLLENSRKTWKKSMINVMSWLRPEVLTSEARYGVSKSMEMDVELMTRTKNDVSASQKHASFDVARFYEAIKRSKAEPML  279 (1322)
Q Consensus       200 ~~l~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~y~~i~~~~~~~~~  279 (1322)
                      ...+.++.+-|++.|...|.|.++..+++...|+...+... ....-....+-........+|-..++..+.+.......
T Consensus       157 ~~~lt~t~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~d-~e~~~~l~~~~k~t~~n~~~d~~~~~~~i~~l~~s~~~  235 (1394)
T KOG0298|consen  157 ILVLTNTQTHVRKRLIREMIVGLQKLTLFFKDFPGSFEFKD-AEQEKVLKFELKTTSTNKLFDALYEKHRITVLVESERS  235 (1394)
T ss_pred             hHhhhhhhhhHHHHHHHHHHhcccccccccccCCceeeech-HHHHHHHhhhhhhhhhhhhhhhHHhhhhccccchhccC
Confidence            99999999999999999999999999888776664322111 00001111111122234456666666665554433222


Q ss_pred             cCCCCCccCCChHHHHHHHHHHHHcccCCCC------CCchhhhccccCCCCCcccccCccccceeccCCCcccCCCCCC
Q 000739          280 EEDLPDLLPLLRPYQRRAAYWMVQREKGDSA------SSSERERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYT  353 (1322)
Q Consensus       280 ~~~~p~L~~~LrPyQ~~aV~WMl~RE~~~~~------~~~~~~~~~~~~plw~~~~~~d~~~~~yyn~~tG~is~~~~~~  353 (1322)
                      ...+....+++|+||.+++.||.+|+..-..      ........+..-++-.++.+.+-+..++              .
T Consensus       236 ~D~~~~~~~~~r~~~~r~~~~~~~~~~e~~~~s~~~It~~~~~di~~~~~~~l~~~~~~~~~~l~--------------~  301 (1394)
T KOG0298|consen  236 LDLIKRFQSQLRKYQQRTVSWMPSREQEYTQVSANFITLHLIDDITRVFKLKLCFQFYSFEEELP--------------K  301 (1394)
T ss_pred             chHHHHhhhhccHHHHHHHHhccccchhhhhccccccccccccchHHHhhhccceecccccccch--------------h
Confidence            2334557899999999999999999984321      0011111111111111111111111111              1


Q ss_pred             CCCcccceeecCCCccHHHHHHHHHHHhcCCCCCCccccccccccchhhhhHHHHhhhhhhhhhcccccccccccccccc
Q 000739          354 SSYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQ  433 (1322)
Q Consensus       354 ~~~vrGGILADEMGLGKTvq~LALIl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~c~c~~~~~~~~~~g~~v~  433 (1322)
                      .+...||.+|||||||||++-+|++..|+.+...                  ++........|.|+...+...+.+.|++
T Consensus       302 e~l~~~~t~~de~gl~k~~E~~a~~~~n~~p~~~------------------~~~s~~~~~~~~~~~~~e~~~~r~nq~~  363 (1394)
T KOG0298|consen  302 ESLSPGGTLADEMGLGKTVEFLAMLTSNRRPPDS------------------YRNSYLHQRLEEYSDEVELKRSRINQKD  363 (1394)
T ss_pred             ccCCCcchHHHHhhhHHHHHHHHHHhccCCCccc------------------ccchHHHHHHHHHhhhhHhHHhHhhhhh
Confidence            2334589999999999999999999999877422                  2334445677888888888888888999


Q ss_pred             ccccccccccc-------ccCcCCCCCcccchhhhhhhcccccccccccccCcccccchhhhhhccCCCCCCCcEEEEeC
Q 000739          434 CDICDAWQHAD-------CVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCP  506 (1322)
Q Consensus       434 c~~c~~w~h~~-------cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~~~~tLIV~P  506 (1322)
                      |..|..|+++.       |-|....-.               -.+........+.|..|++.......+..+|+||||||
T Consensus       364 ~~~~~~~~~~g~~~~~ade~~~qk~~~---------------~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P  428 (1394)
T KOG0298|consen  364 EVLCSGDKKHGKRVQCADEMGWQKTSE---------------KLILELSDLPKLCPSCCSELVKEGENLVETGATLIICP  428 (1394)
T ss_pred             HHhhcCCccCCcceeehhhhhccchHH---------------HHHHHHhcccccchhhhhHHHhcccceeecCceEEECc
Confidence            98888887764       222111000               00112233455667777777777888899999999999


Q ss_pred             CchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccchhhhhhccc
Q 000739          507 APILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKR  586 (1322)
Q Consensus       507 ~SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kr  586 (1322)
                      .+++.||..||.+|+++ .++|+.|.|.++....     .+..+..||||+|||++|+.++.|.  ...++.|.+|++++
T Consensus       429 ~aIl~QW~~EI~kH~~~-~lKv~~Y~Girk~~~~-----~~~el~~yDIVlTtYdiLr~El~ht--e~~~~~R~lR~qsr  500 (1394)
T KOG0298|consen  429 NAILMQWFEEIHKHISS-LLKVLLYFGIRKTFWL-----SPFELLQYDIVLTTYDILRNELYHT--EDFGSDRQLRHQSR  500 (1394)
T ss_pred             HHHHHHHHHHHHHhccc-cceEEEEechhhhccc-----CchhhhccCEEEeehHHHHhHhhcc--cccCChhhhhcccC
Confidence            99999999999999985 4799999999876542     5588899999999999999999875  56788999999999


Q ss_pred             CCCcchhccccceeeeeccCccccCCchHHHHHHHHHhccceEEEEeccCCCCChhhhHhhhhccCCCCCCChhHHHHHH
Q 000739          587 YPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVI  666 (1322)
Q Consensus       587 y~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~~~~~F~~~~  666 (1322)
                      |+.+++||..+.|||||||||||+....|.+++|+.+|++.||||+||||||+ ++|||+||.||+..||+...+|.+.+
T Consensus       501 ~~~~~SPL~~v~wWRIclDEaQMvesssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v  579 (1394)
T KOG0298|consen  501 YMRPNSPLLMVNWWRICLDEAQMVESSSSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTV  579 (1394)
T ss_pred             CCCCCCchHHHHHHHHhhhHHHhhcchHHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999 99999999999999999999999999


Q ss_pred             cCCCCCCccchHHHHHHHhhhhheecccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000739          667 RDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNIL  746 (1322)
Q Consensus       667 ~~p~~~g~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~~~~~~~~~~~  746 (1322)
                      ..++...  .....+..++...++|+.|.+|..++.+||+.+.++++.+++.|-++|+..+..|..++...+..++++.+
T Consensus       580 ~~~~~~r--a~~~~~~dl~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l  657 (1394)
T KOG0298|consen  580 DKAYQLR--AKCEPLLDLFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNL  657 (1394)
T ss_pred             HHHHHHH--hhhhhHHHHHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhcc
Confidence            8877654  44567889999999999999999999999999999999999999999999999999999988888776654


Q ss_pred             hccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCcCCCcccccccCCCCCHHHHHHHHHHHHHHhhhhhcchhh
Q 000739          747 KRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLV  826 (1322)
Q Consensus       747 ~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~~t~eelL~~Ll~~~~~e~~e~~rkvL  826 (1322)
                      ..         ..+.+.+++...+.++.+|++|||+||||+++.+.+.+....  +++|+|..|+.+...++.+..|...
T Consensus       658 ~~---------~sd~~~l~~~~~a~i~~~l~rLRq~Cchplv~~~~ls~~k~~--s~~DiL~~lle~~ed~~~~~~R~~~  726 (1394)
T KOG0298|consen  658 DN---------SSDLASLSPQLLAIILKWLLRLRQACCHPLVGNSNLSSTKYL--SIQDILARLLENTEDECKTELRTLA  726 (1394)
T ss_pred             cc---------ccccccCChhhHHHHHHHHHHHHHhhcccccccCCcchhcCC--CHHHHHHHHHHhcchhhhHHHHHHH
Confidence            21         222344566778899999999999999999999888776554  9999999999999999999999999


Q ss_pred             hhhhhHhHHHHHHHhHhH----HHHHHHHHHHHHHHHhhhcc-CCCCcceeeEecCCCCChhhhhhhhhhhccCCCCceE
Q 000739          827 MALNGLAGIALIEKNLSQ----AVSLYKEAMAVVEEHSEDFR-LDPLLNIHLHHNLTEILPMVANCATELSQNEQHFPGC  901 (1322)
Q Consensus       827 ifsq~la~L~ile~~l~~----a~~~y~~~l~~~~e~~~~f~-~D~~~~l~~~~nl~dwNp~~d~QA~d~hRIGQ~k~V~  901 (1322)
                      ..+++++.+..+.+++..    ....|+..+....+...+.. .|.....|-.+++.        |+.+           
T Consensus       727 ~~~~~~a~i~~~~n~f~~~~l~i~k~y~~~~nl~~~~~~~~~~~d~d~h~~ei~~~~--------~~~~-----------  787 (1394)
T KOG0298|consen  727 SSKNGLAAIYFEKNDFPGGILQIIKYYRLKLNLANEPNEQNISVDSDLHIHEIYNLL--------QASS-----------  787 (1394)
T ss_pred             HHhhhhHHHHHHHhcCchhHHHHHHHhccccccCCCchhcccccchhhHHHHHhhhh--------cccc-----------
Confidence            999999999999998875    34455555443322222111 22222223333322        1110           


Q ss_pred             EEEcccCCcccccchhHhhhhccccccCCCCCCCCCCCCCCCccccCCCCCCCCCCcCCCCCCCChhhHHHHHHHHHHHH
Q 000739          902 SEKAFKIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLSDLSENGFNGDRKSDCCVSSSSFDDASLITVCENLKQKY  981 (1322)
Q Consensus       902 VyRlit~~TiEE~i~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~l~~~Y  981 (1322)
                             +-+-+......++++.-....               .-++..+.|.+            -.+.--|..++++|
T Consensus       788 -------~~~sd~~~~~~~~~~~~~~~s---------------~~~~~~~~d~~------------~~~~~~~q~~~~kl  833 (1394)
T KOG0298|consen  788 -------LAPSDRKLTELEHKKYQAQMS---------------RLEWKYLEDET------------RVLYSLLQDLNEKL  833 (1394)
T ss_pred             -------ccchhhhHHHHHHHhhhhhhc---------------cccchhhchhh------------HHHHHHHHHHHHHH
Confidence                   000000011111111111100               00111112211            13666789999999


Q ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHhhhcccccChhHHHHHHHhhcCCcchHHHHHHHHHHhhccccccccccccccccC
Q 000739          982 LSGFSVKLSVAQQEFRKSYMQVCNALDDREKQYSAWWLEALHHAEGNKDFSAELIRKIEEAISGSLNKSRALRTASRYRS 1061 (1322)
Q Consensus       982 l~~~~~~~~~a~~~~~~~~~~v~~~~~~~~~~~~~Ww~~~l~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 1061 (1322)
                      ++.+..+...++.+|...+.++.+.++.++.....||++.....+.+.++..+|-                 .|+.+++.
T Consensus       834 ~s~~~~~~t~~~~e~~~~~~~~~~v~s~m~~k~~~~v~~~~~lqe~~~~~~~eLr-----------------ai~~~~~~  896 (1394)
T KOG0298|consen  834 ESVSILKKTFELEEFDLLATNMVNVKSSMGDKIWNKVRDDRLLQEINVEFLEELR-----------------AIAFRARF  896 (1394)
T ss_pred             HHHHhhhhhhhHHHHHHHhhhhhhhhccccchhHHHHHhhhHHHHHHHHHHHHHH-----------------HHHhhhhc
Confidence            9999999999999999999999999999999999999999999999887766665                 26668999


Q ss_pred             ccchHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhcccccccccCCCCCccccccccchHHHHHHhhccccc
Q 000739         1062 ISGLTYHIQSSLDQLEASRKTLLDRLLEIDQTMEKPKEEDMDRMRHCRICYGVGDGPICVHCELDESFQDYEARLFRLKK 1141 (1322)
Q Consensus      1062 ~~gL~~~L~~~ld~L~~~R~~l~~~l~~l~~~~~~p~~~~ve~~~~C~~C~~~~~~~~C~~C~~~~~f~~yE~~LF~~~~ 1141 (1322)
                      +.+++..|++...+|..+++.+..+++++++.++.+...+..+...|-.|-...-++.|.+|.+|..+..|+++.|+.+.
T Consensus       897 i~i~~l~L~~~~~~l~~s~~e~~~~~~~i~~~Ie~~~~~~~n~~~i~d~~~k~~~~h~~~~~~~d~~~~i~~~r~~~~~~  976 (1394)
T KOG0298|consen  897 IHIMKLKLQNLKSDLIASFEEVKGVMQEICEAIETGGALVLNRMEIIDFIEKVTVCHLTDIEDYDKDKPIKPKRHRRCRL  976 (1394)
T ss_pred             cccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHhccCCCcchHhhcccccccccchhhhhhh
Confidence            99999999999999999999999999999999999999988888888888877778889999999999999999988665


Q ss_pred             cCCCc---cchHHHHHHHhhhccccccccccCCCCCCCCCCCCchhhhhccccccceeeccCCchHHHHHHHHHHH-Hhh
Q 000739         1142 SQGDI---ASAEEAVDLQKKNSSLNRFYWYLSQPNKNSTSSSVGNEEIKRRDVRETVVVSKSPSELEVILGVIKNY-CKT 1217 (1322)
Q Consensus      1142 ~~~g~---~s~e~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Se~E~vLk~i~~~-~k~ 1217 (1322)
                      ..++-   +-+++-+.+|.+.+.++-+.-++++                               -.-..-|.|..+ .+.
T Consensus       977 ~~~~~~~i~~~ce~~~~q~k~~~~~s~~~~l~~-------------------------------~~~~~ekSi~~~~~~~ 1025 (1394)
T KOG0298|consen  977 CLRRKSLILFECELFALQPKEDATVSESLELSS-------------------------------MEKSFEKSIIAFLRKK 1025 (1394)
T ss_pred             hhhhhHHHHHHHHHHhcCccccchhhhhhccch-------------------------------hhhcchhhHHHHHHHH
Confidence            43332   5566667776555444433222221                               111112334444 455


Q ss_pred             hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhcccccCCCCCcccccCccccchhhhhchhh
Q 000739         1218 QLGREAISASSKQLHILEAMRKEYANARSLATAQAQFLRAHDEIRMATTRLHLKEDDNDTSVDALSPDELASASVTNSSE 1297 (1322)
Q Consensus      1218 ~~~~~~~~~~~~hl~lle~mrkEf~~~r~l~~a~~~~l~A~DEL~Mat~Rlrlr~~~e~~~~~~i~~~Ev~~~~~~~~~e 1297 (1322)
                      ++.+++..+|+.||++|+.|+.++...++||..+.|.+.|+||++|+++||.|++..|..++|.|+.++++.+.+-.+++
T Consensus      1026 ~l~~e~~~~~t~~~~~l~~lqnt~~~~~~~~~~~qq~~~~~~~~~~~~m~l~lkd~~~~~~~y~i~~~qld~~~~~nt~s 1105 (1394)
T KOG0298|consen 1026 QLFSEWKEEATPLLELLSCLQNTYKFRIEYWIEVQQMVDALDELEMSKMRLYLKDDEEEQSIYRILACQLDEQSQLNTYS 1105 (1394)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhheeeecCcHHHHHHHHHHHhhHHHHHHHhHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhHHHHHHhhccccccccccc
Q 000739         1298 KFISMTLLSQVKGKLRYLKVSTE 1320 (1322)
Q Consensus      1298 k~~a~~~l~r~~gqL~YL~~l~~ 1320 (1322)
                      ++++...+..+.|-+|||++|.+
T Consensus      1106 ~~~~q~~~ls~~G~~r~lk~l~e 1128 (1394)
T KOG0298|consen 1106 LQTSQLSFLSIPGLLRYLKGLKE 1128 (1394)
T ss_pred             HHHhhhhhhccchHHHHHHHHHH
Confidence            99999999999999999999975

>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] Back     alignment and domain information
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] Back     alignment and domain information
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] Back     alignment and domain information
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] Back     alignment and domain information
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] Back     alignment and domain information
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] Back     alignment and domain information
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e Back     alignment and domain information
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>KOG0354 consensus DEAD-box like helicase [General function prediction only] Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional Back     alignment and domain information
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] Back     alignment and domain information
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG3587 Restriction endonuclease [Defense mechanisms] Back     alignment and domain information
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>KOG0343 consensus RNA Helicase [RNA processing and modification] Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1322
1z6a_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN 5e-13
1z63_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM 1e-12
3mwy_W800 Crystal Structure Of The Chromodomain-atpase Portio 1e-06
>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 Back     alignment and structure 
Iteration: 1

 Score = 73.9 bits (180), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 117/299 (39%), Gaps = 63/299 (21%)
Query: 501 TLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTY 560
           +L++CP  +L  W+ E+++   P       +E      L D            DI+LTTY
Sbjct: 89  SLVICPLSVLKNWEEELSKFA-PHLRFAVFHEDRSKIKLED-----------YDIILTTY 136
Query: 561 DVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEM 620
            VL  D                         T L  + W  I +DEAQ +++      + 
Sbjct: 137 AVLLRD-------------------------TRLKEVEWKYIVIDEAQNIKNPQTKIFKA 171
Query: 621 ALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEF 680
              L +K+R  +TGTPI+ K+DDL+ ++ FL          +      P + GD  A E 
Sbjct: 172 VKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEE 231
Query: 681 THKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQR 740
                   + R +K   +    LP + E   +   +P +   Y+++           ++ 
Sbjct: 232 LKAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAE-----------VEN 280
Query: 741 LKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQS 799
           L +NI               + +        +L++LLKL+Q   HP +   G +S+++S
Sbjct: 281 LFNNI---------------DSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRS 324
>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 Back     alignment and structure
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1322
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 7e-27
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 2e-06
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 2e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 7e-10
3dmq_A968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 9e-10
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 3e-08
1wem_A76 Death associated transcription factor 1; structura 3e-08
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 5e-08
1wee_A72 PHD finger family protein; structural genomics, PH 7e-08
3o70_A68 PHD finger protein 13; PHF13, structural genomics 2e-07
1wew_A78 DNA-binding family protein; structural genomics, P 2e-07
3pur_A528 Lysine-specific demethylase 7 homolog; oxidoreduct 2e-07
1we9_A64 PHD finger family protein; structural genomics, PH 3e-06
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 3e-06
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 4e-05
3lqh_A183 Histone-lysine N-methyltransferase MLL; PHD finger 2e-04
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 2e-04
2k16_A75 Transcription initiation factor TFIID subunit 3; p 2e-04
3kv5_D488 JMJC domain-containing histone demethylation prote 4e-04
3kv4_A447 PHD finger protein 8; epigenetics, histone CODE, c 8e-04
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 Back     alignment and structure
 Score =  115 bits (290), Expect = 7e-27
 Identities = 64/299 (21%), Positives = 111/299 (37%), Gaps = 81/299 (27%)

Query: 497 ATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIV 556
               +L++CP  +L  W+ E+++   P  L+  ++   R+            +L   DI+
Sbjct: 85  ELTPSLVICPLSVLKNWEEELSKFA-P-HLRFAVFHEDRSKI----------KLEDYDII 132

Query: 557 LTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAA 616
           LTTY VL  D                           L  + W  I +DEAQ ++ N   
Sbjct: 133 LTTYAVLLRDTR-------------------------LKEVEWKYIVIDEAQNIK-NPQT 166

Query: 617 ATEMALR-LYAKHRWCITGTPIQRKLDDLYGLLRFL------KSSPFSISRWWIEVIRDP 669
               A++ L +K+R  +TGTPI+ K+DDL+ ++ FL        S F            P
Sbjct: 167 KIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFK------SKFATP 220

Query: 670 YENGDVGAMEFTHKFFKEIMCRSSK--VHVSDELQLPPQEECVSWLTFSPIEEHFYQSQH 727
            + GD  A E         + R +K    + ++  LP + E   +   +P +   Y++  
Sbjct: 221 IKKGDNMAKEELKAIISPFILRRTKYDKAIIND--LPDKIETNVYCNLTPEQAAMYKA-- 276

Query: 728 ETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHP 786
                    +   +      +                       +L++LLKL+Q   HP
Sbjct: 277 -----EVENLFNNIDSVTGIKR-------------------KGMILSTLLKLKQIVDHP 311
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Length = 52 Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Length = 76 Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Length = 68 Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 72 Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Length = 68 Back     alignment and structure
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 78 Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Length = 528 Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 64 Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} Length = 75 Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Length = 79 Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Length = 183 Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Length = 52 Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Length = 488 Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Length = 447 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1322
d1z63a1230 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h 1e-11
d1z63a1230 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h 2e-04
d1wema_76 g.50.1.2 (A:) Death associated transcription facto 2e-08
d1z3ix2298 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis 6e-08
d1z3ix2298 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis 1e-04
d1weea_72 g.50.1.2 (A:) PHD finger protein At1g33420 {Thale 3e-07
d1wepa_79 g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus 5e-07
d1wewa_78 g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c 1e-06
d1we9a_64 g.50.1.2 (A:) PHD finger protein At5g26210 {Thale 3e-05
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Helicase of the SNF2/Rad54 hamily
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 63.9 bits (154), Expect = 1e-11
 Identities = 30/111 (27%), Positives = 49/111 (44%)

Query: 594 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 653
           L  + W  I +DEAQ +++      +    L +K+R  +TGTPI+ K+DDL+ ++ FL  
Sbjct: 120 LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNP 179

Query: 654 SPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLP 704
                   +      P + GD  A E         + R +K   +    LP
Sbjct: 180 GLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLP 230
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230 Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298 Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298 Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1322
d1z63a1230 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 100.0
d1z3ix2298 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 100.0
d1z3ix1346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 99.95
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 99.91
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.8
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 99.77
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.6
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.35
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 99.04
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 99.03
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 98.95
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 98.82
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 98.75
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 98.62
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 98.53
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 98.53
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 98.19
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 98.17
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 98.16
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 98.03
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 97.92
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 97.79
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 97.74
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 97.54
d1q0ua_209 Probable DEAD box RNA helicase YqfR {Bacillus stea 97.37
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 96.93
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 95.36
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 94.55
d1wema_76 Death associated transcription factor 1, Datf1 (DI 93.34
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 93.17
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 93.15
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 90.13
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 83.28
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 80.54
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Helicase of the SNF2/Rad54 hamily
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=0  Score=358.35  Aligned_cols=227  Identities=30%  Similarity=0.468  Sum_probs=196.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             89888458882899999999997201999998311001246788776543476663010267896557888888875563
Q 000739          281 EDLPDLLPLLRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSSYVFGG  360 (1322)
Q Consensus       281 ~~~p~L~~~LrPyQ~~aV~WMl~RE~~~~~~~~~~~~~~~~~Plw~~~~~~d~~~~~yyn~~tG~is~~~~~~~~~vrGG  360 (1322)
                      .+|++|+.+|+|||++||.||+.++....                                                 ||
T Consensus         4 ~~P~~~~~~L~~yQ~~~v~~~~~~~~~~~-------------------------------------------------g~   34 (230)
T d1z63a1           4 LEPYNIKANLRPYQIKGFSWMRFMNKLGF-------------------------------------------------GI   34 (230)
T ss_dssp             CCCCSCSSCCCHHHHHHHHHHHHHHHTTC-------------------------------------------------CE
T ss_pred             CCCHHHHCCHHHHHHHHHHHHHHHHHCCC-------------------------------------------------CE
T ss_conf             69446504506999999999998621699-------------------------------------------------87


Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             54639886279999999998139999984111222223302356788732222453203554311124652101323534
Q 000739          361 ILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQCDICDAW  440 (1322)
Q Consensus       361 ILADEMGLGKTve~LALIl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~c~c~~~~~~~~~~g~~v~c~~c~~w  440 (1322)
                      |||||||||||+++|+++......                                                        
T Consensus        35 iLaDe~GlGKT~~~i~~~~~~~~~--------------------------------------------------------   58 (230)
T d1z63a1          35 CLADDMGLGKTLQTIAVFSDAKKE--------------------------------------------------------   58 (230)
T ss_dssp             EECCCTTSCHHHHHHHHHHHHHHT--------------------------------------------------------
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHC--------------------------------------------------------
T ss_conf             998589988699998735544212--------------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHC
Q ss_conf             45665676889876540366631013565442202568543320001210168989999389991881168899999843
Q 000739          441 QHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRH  520 (1322)
Q Consensus       441 ~h~~cv~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~~~~tLIV~P~SLl~QW~~Ei~k~  520 (1322)
                                                                             ...+++|||||++++.||.+|+.+|
T Consensus        59 -------------------------------------------------------~~~~~~LIv~p~~l~~~W~~e~~~~   83 (230)
T d1z63a1          59 -------------------------------------------------------NELTPSLVICPLSVLKNWEEELSKF   83 (230)
T ss_dssp             -------------------------------------------------------TCCSSEEEEECSTTHHHHHHHHHHH
T ss_pred             -------------------------------------------------------CCCCCCCEECCHHHHHHHHHHHHHH
T ss_conf             -------------------------------------------------------3556441105355426777777764


Q ss_pred             CCCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCEEEEEHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCHHCCCCCEE
Q ss_conf             89999729997188766554422100000038679998358785210467777765023432102578720000022200
Q 000739          521 TRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWW  600 (1322)
Q Consensus       521 ~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DIVITTYetL~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~  600 (1322)
                      +.  ..++..+++...          .....+++|+|++|+.+.+..                         .+..+.|+
T Consensus        84 ~~--~~~~~~~~~~~~----------~~~~~~~~vvi~~~~~~~~~~-------------------------~l~~~~~~  126 (230)
T d1z63a1          84 AP--HLRFAVFHEDRS----------KIKLEDYDIILTTYAVLLRDT-------------------------RLKEVEWK  126 (230)
T ss_dssp             CT--TSCEEECSSSTT----------SCCGGGSSEEEEEHHHHTTCH-------------------------HHHTCCEE
T ss_pred             CC--CCCCEEECCCCC----------HHHCCCCCEEEEEHHHHHHHH-------------------------HHHCCCCE
T ss_conf             02--544101014210----------000257688985499998688-------------------------87416513


Q ss_pred             EEECCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf             16406743347804799999998404609999536998992345743210179999984677998718887886005899
Q 000739          601 RICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEF  680 (1322)
Q Consensus       601 rVILDEAH~iKN~~Sk~~kal~~L~a~~Rw~LTGTPIqN~l~DL~sLL~FL~p~~l~~~~~f~~~~~~p~~~g~~~~~~~  680 (1322)
                      +||+||||++||+.++.++++..+++.+||+|||||++|++.|||++++||.|++|++...|...|..++..++....+.
T Consensus       127 ~vI~DEah~~k~~~s~~~~~~~~l~a~~r~~LTgTPi~n~~~dl~~ll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~  206 (230)
T d1z63a1         127 YIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEE  206 (230)
T ss_dssp             EEEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHH
T ss_pred             EEEEEHHHCCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf             99997100344322055666544046557997252677678889988876289867899999999844553267789999


Q ss_pred             HHHHHHHHHEECCCCCCCCCCCCC
Q ss_conf             999864440231433223568999
Q 000739          681 THKFFKEIMCRSSKVHVSDELQLP  704 (1322)
Q Consensus       681 L~~lL~~imLRRtK~dV~~el~LP  704 (1322)
                      |+.++++||+||+|.|+....+||
T Consensus       207 L~~~l~~~~lRr~K~d~~v~~dLP  230 (230)
T d1z63a1         207 LKAIISPFILRRTKYDKAIINDLP  230 (230)
T ss_dssp             HHHHHTTTEECCCTTCHHHHTTSC
T ss_pred             HHHHHHCCEEEEECCCCCHHHCCC
T ss_conf             999842337997168861755679
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure