Citrus Sinensis ID: 000742

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310---
Protein Sequence
MGRDEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEARRLQHEIDKLKESKSEDLEAYDVARDCCSETDTEGNDHLPDVRSSACFPAEMSKSDSGRSKTLAGLEEVEDDEPLISFLRSSERLPKLKRAYVEKQNIPTEPRELTPKTLSKSTNSQQTGGGRKRIRVVLSDDEGDIDNEEGLKGRLQKCPVEGVATFDAINSKSGSASPAHKFQDVPAADFKCTNSSENPINVEESTCSHKFTSSNPTNQYGNAIRCTGKVFIASDVNDDQCVTFRIDDDLIHLEVHSCICDDKLDIESLKVELACLYYLQLPKEKISKGLLPIIQHMKYGGRSLESFDAFKDQLGKDIIEVSIDGWVQKRLMKLYIECCKELSEAPNMKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKELTLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFDNSCTSSCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFSTQAVKTLYCAWSSRSGAGPAWKHIKEQIIHFSVEGNKCCRVKPCCRKN
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccHHHHccccccHHHHHHcccHHHHHHHHHHHHHHHHccccccccccHHHHHHHcccHHHHHHHHHHHHccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccEEEEEcccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccccccccHHHcccccHHHHccccccccccHHHHHHHHcccccHHHHHHHHHHccccccccEEccccccccccHHHHHHHHcccccccEEEcccccccHHHHHHHHHHHHccccccccEEEccccccccHHHHHHHHHHccccccccEEEcccccccccHHHHHHHHHcccccccEEEcccccccHHHHHHHHHHHcccccccEEEcccccccccHHHHHHHHHccccccccEEEcccccccHHHHHHHHHHHcccccccEEccccccccHHHHHHHHHHccccccccEEEcccccccHHHHHHHHHHHcccccccEEEccccccccHHHHHHHHHcccccccccEEEcccccccHHHHHHHHHHHcccccccccccccccccHHHHHHHHcccccccHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccHEccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHEEEcccHHHHHHHHHHHHHHHHHHcHHHHHcccccHccccccccccccccccccccccccccccccccccccccccccccccccEHHEEccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccEEEEEcccccccccccHHHHHHHHHHHHHHccccHHHccccHHHHHHHHHccccccccccHHHHccccEEEEEEcccccccHHHHHHHHHHHHcccHHHHHHHHHHHccccccEEEccccccHHHHHHHHHHHHccccccEEEccccccccHHHHHHHHHHccccccccEEEEHHccccccHHHHHHHHHHHHccccccEEEccccccccHHHHHHHHHHcccHHHHHEEHHHccccHHHHHHHHHHHHccccccEEEccccccccHHHHHHHHHHcccccccEEEEEEcccccHHHHHHHHHHHHcccccEEEccccccHHHHHHHHHHHHccccccccEEEcccccccHHHHHcHHHHHHHcccccEEEccccccHHHHHHHHHHHHHcccccccEEEccccccEHHHHHHHHHHHHHcccccEEEccccEcHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccccHccccccccccccHHHcccccccccccHccccccccHHHHHHHHHHHHccccccEEEcccccccHHHHHHHHHHHHccccccccHcccccEEEEEEEccccccccccccccc
Coil and Loop (DISEMBL)
MGRDEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDvsvkylpekhllptcqSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTlkenpatsrSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLeicneeevsedddgrsrlhhnLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASelcdkgklsdsFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNmgnvldsngdwaGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEARRLQHEIDKlkesksedleaYDVARDCcsetdtegndhlpdvrssacfpaemsksdsgrsktlagleeveddeplisFLRSSERLPKLKRAYVEkqniptepreltpktlskstnsqqtgggrkrirvvlsddegdidneeglkgrlqkcpvegvatfdainsksgsaspahkfqdvpaadfkctnssenpinveestcshkftssnptnqygnairctgkvfiasdvnddqcvtfridddlIHLEVHScicddkldIESLKVELACLYYLqlpkekiskgllPIIQhmkyggrsleSFDAFKDQLGKDIIEVSIDGWVQKRLMKLYIECCKELSEAPNMKLLKKLYISEVEDEVIVSecelqdisvtplLNALHTHKTVALLDLShnllgngtMEKLQQFFISSCQNYVDLTLDlhcnrfgpttlfqicecpvlFTRLGvlnlsgnrltdACGSYLSTILKNCKVLYSlniencsitSRTIQKVADALGAESTLAQLCigynspvtgNAITNLLVKLDTLKSFSelnlnglklskPVVDRLCQLAKTSCLTHLMlgctnlgsdgsLQLVESLFSRAQESVKLDlsycglestcihkFTASVSLVHGILelnlggnpiMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALsendtleelnladnASKELTLQQNlssvnsenlqpalktsdcvskevdtdqhglfamntdcndlevadseddkIRVESaasgfdnsctsscqknssFECQFVQELSSaigmakplqlldlsnngfsTQAVKTLYCAwssrsgagpawkHIKEQIIHFSVegnkccrvkpccrkn
Flexible Loop (DISEMBL)
mgrdemqmseAKRAYrsakeegnrqeearwANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLkenpatsrSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICneeevsedddgrsrlhhNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNmiiakgtsqeRKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIAselcdkgklsdsfLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEARRLQHEIDKlkesksedleaYDVARDCCSEtdtegndhlpdvRSSACfpaemsksdsgrSKTLagleeveddeplisflrsserlpklkrayvekqniptepreltpktlskstnsqqtgggrkrirvvlsddegdidneeglkgrlqkcpVEGVATFDAINSKSGSASPAHKFQDVPAADFKCTNSSENPINVEESTCSHKftssnptnqygNAIRCTGKVFIASDVNDDQCVTFRIDDDLIHLEVHSCICDDKLDIESLKVELACLYYLQLPKEKISKGLLPIIQHMKYGGRSLESFDAFKDQLGKDIIEVSIDGWVQKRLMKLYIECCKELSEAPNMKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKELTLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFDNSCTSSCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFSTQAVKTLYCAWSSRSGAGPAWKHIKEQIIHFsvegnkccrvkpccrkn
Low Complexity Region (SEG)
MGRDEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDelkkeeqnlkklTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEARRLQHEIDKLKESKSEDLEAYDVARDCCSETDTEGNDHLPDVRSSACFPAEMSKSDSGRSKTLAGLEEVEDDEPLISFLRSSERLPKLKRAYVEKQNIPTEPRELTPKTLSKSTNSQQTGGGRKRIRVVLSDDEGDIDNEEGLKGRLQKCPVEGVATFDAINSKSGSASPAHKFQDVPAADFKCTNSSENPINVEESTCSHKFTSSNPTNQYGNAIRCTGKVFIASDVNDDQCVTFRIDDDLIHLEVHSCICDDKLDIESLKVELACLYYLQLPKEKISKGLLPIIQHMKYGGRSLESFDAFKDQLGKDIIEVSIDGWVQKRLMKLYIECCKELSEAPNMKLLKKLYisevedevivseceLQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKELTLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFDNSCTSSCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFSTQAVKTLYCAWSSRSGAGPAWKHIKEQIIHFSVEGNKCCRVKPCCRKN
Disordered region (IsUnstruct)
****************************RWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKL**************FLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICN*************LHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLA*****************************************RNMIIAKG****RKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEE******************************************************************************************************************************************************CPVEGVATF****************************************************QYGNAIRCTGKVFIASDVNDDQCVTFRIDDDLIHLEVHSCICDDKLDIESLKVELACLYYLQLPKEKISKGLLPIIQHMKYGGRSLESFDAFKDQLGKDIIEVSIDGWVQKRLMKLYIECCKELSEAPNMKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSEN*************************************************GLFAMNTDC***********************************FECQFVQELSSAIGMAKPLQLLDLSNNGFSTQAVKTLYCAWSSRSGAGPAWKHIKEQIIHFSVEGNKCCRVKPCC***
Disordered Region (DISOPRED)
MGRDEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEARRLQHE***************DVARDCCSETDTEGNDHLPDVRSSAC*****************GLEEVEDDEPLISFLRSSERLPK**********************************GRK***VV*******************************************************************************************************CVTFRIDDDLIHLEVHSCICDDKLDIESLKVELACLYYLQLP************QHMKYGGRSLESFDAFKDQLGKDIIEVSIDGWVQKRLMKLYIECCKELSEAPNMKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKELTLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEV****DDKIRVESAASGFDNSCTSSCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFSTQAVKTLYCAWSSRSG**PAWKHIKEQIIHFSVEGNKCCRVKPCCR**
Disordered Region (DISEMBL)
**************************EARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNE*********RSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEARRLQHEIDKLKESKSEDLEAYDVARDCCSETDTEGNDHLPDVRSSACFP*************LAGLEEVEDDEPLISFLRSSERLPKLKRAYVEKQNIPTEPRELT*****************KRIRVVLSDDEGDIDNEEGLKGRLQKCPVEGVATFDAINS********HKFQDVPAADFKCTNSSENPINVEESTCSHKFTSSNPTNQYGNAIRCTGKVFIASDVNDDQCVTFRIDDDLIHLEVHSCICDDKLDIESLKVELACLYYLQLPKEKISKGLLPIIQHMKYGGRSLESFDAFKDQLGKDIIEVSIDGWVQKRLMKLYIECCKELSEAPNMKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKELTLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFDNSCTSSCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFSTQAVKTLYCAWSSRSGAGPAWKHIKEQIIHFSVEGNKCCRVKPCCRKN
Disordered Region (DISPRO)
*****MQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEARRLQHEIDKLKESKSEDLEAYDV*********************************************VEDDEPLISFLRS***************************************GGRKRIRVVLSDD*******************************************************ENP*************************************NDDQCVTFRIDDDLIHLEVHSCICDDKLDIESLKVELACLYYLQLPKEKISKGLLPIIQHMKYGGRSLESFDAFKDQLGKDIIEVSIDGWVQKRLMKLYIECCKELSEAPNMKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKELTLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFDNSCTSSCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFSTQAVKTLYCAWSSRSGAGPAWKHIKEQIIHFSVEGNKCCRVKPCC***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxRWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEExxxxxxxxxxxxxxxxxxxxxYDVARDCCSETDTEGNDHLPDVRSSACFPAEMSKSDSGRSKTLAGLEEVEDDEPLISFLRSSERLPKLKRAYVEKQNIPTEPRELTPKTLSKSTNSQQTGGGRKRIRVVLSDDEGDIDNEEGLKGRLQKCPVEGVATFDAINSKSGSASPAHKFQDVPAADFKCTNSSENPINVEESTCSHKFTSSNPTNQYGNAIRCTGKVFIASDVNDDQCVTFRIDDDLIHLEVHSCICDDKLDIESLKVELACLYYLQLPKEKISKGLLPIIQHMKYGGRSLESFDAFKDQLGKDIIEVSIDGWVQKRLMKLYIECCKELSEAPNMKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKELTLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFDNSCTSSCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFSTQAVKTLYCAWSSRSGAGPAWKHIKEQIIHFSVEGNKCCRVKPCCRKN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1313	2.2.26 [Sep-21-2011]
Q6Q4D0	1311	Protein TONSOKU OS=Arabid	yes	no	0.969	0.971	0.551	0.0
Q96AY4	2481	Tetratricopeptide repeat	yes	no	0.335	0.177	0.221	3e-17
Q0P5G1	1374	Tonsoku-like protein OS=B	no	no	0.249	0.238	0.264	5e-14
D4A615	1367	Tonsoku-like protein OS=R	no	no	0.251	0.241	0.271	9e-13
A9JR78	1427	Tonsoku-like protein OS=D	no	no	0.172	0.158	0.241	3e-12
Q96HA7	1378	Tonsoku-like protein OS=H	no	no	0.250	0.238	0.25	3e-11
Q80XJ3	1691	Tetratricopeptide repeat	no	no	0.259	0.201	0.2	2e-10
Q6NZL6	1363	Tonsoku-like protein OS=M	no	no	0.207	0.200	0.271	6e-10
Q9R080	673	G-protein-signaling modul	no	no	0.172	0.337	0.235	7e-08
Q6IR34	673	G-protein-signaling modul	no	no	0.172	0.337	0.231	1e-07

>sp|Q6Q4D0|TONS_ARATH Protein TONSOKU OS=Arabidopsis thaliana GN=TSK PE=1 SV=2

 Score = 1346 bits (3484), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 745/1351 (55%), Positives = 962/1351 (71%), Gaps = 78/1351 (5%)

Query: 1    MGRDEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVK 60
            MGR  + ++ AKRAYR A+E G+R+E+ARWAN +GDILKN GEYV+ALKWFRIDYD+SVK
Sbjct: 1    MGR--LDVAAAKRAYRKAEEVGDRREQARWANNVGDILKNHGEYVDALKWFRIDYDISVK 58

Query: 61   YLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYY 120
            YLP K LLPTCQSLGE+YLRLE+F++ALIYQ KKHL+LA++A+D VE+QRACTQLGRTY+
Sbjct: 59   YLPGKDLLPTCQSLGEIYLRLENFEEALIYQ-KKHLQLAEEANDTVEKQRACTQLGRTYH 117

Query: 121  EMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSS-FLKEYIDAHNNIGMLQMEL 179
            EMFL+S+DD  +I++AKKYFK AM+LAQ LKE P    SS FL+EYI+AHNNIGML ++L
Sbjct: 118  EMFLKSEDDCEAIQSAKKYFKKAMELAQILKEKPPPGESSGFLEEYINAHNNIGMLDLDL 177

Query: 180  DNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIIC 239
            DN E A+  L +GL+IC+EEEV E D  RSRLHHNLGNV+M LR WD++++HIE DI IC
Sbjct: 178  DNPEAARTILKKGLQICDEEEVREYDAARSRLHHNLGNVFMALRSWDEAKKHIEMDINIC 237

Query: 240  KKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETV 299
             KI H QGEAKGYINL ELH + QKY +A+LCY KA +LA+SM+DE AL  QI+ N + V
Sbjct: 238  HKINHVQGEAKGYINLAELHNKTQKYIDALLCYGKASSLAKSMQDESALVEQIEHNTKIV 297

Query: 300  KKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKH 359
            KK+++VM+EL++EE  LKKL+  M  AKGTS+ERK +LQ NA L  LI+KSSM+FAWLKH
Sbjct: 298  KKSMKVMEELREEELMLKKLSAEMTDAKGTSEERKSMLQVNACLGSLIDKSSMVFAWLKH 357

Query: 360  CEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQ 419
             +Y+KRKK+I+ ELCDK KLSD+F+++GESYQ LR F K++KW+ +S+E +++IGNLEGQ
Sbjct: 358  LQYSKRKKKISDELCDKEKLSDAFMIVGESYQNLRNFRKSLKWFIRSYEGHEAIGNLEGQ 417

Query: 420  ALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEE 479
            ALAK+N+GN LD  G+W GAL A++EGYRIA++ANLPS+QLSALE++HY HM+RF N ++
Sbjct: 418  ALAKINIGNGLDCIGEWTGALQAYEEGYRIALKANLPSIQLSALEDIHYIHMMRFGNAQK 477

Query: 480  ARRLQHEIDKLKESKSEDLEAYDVARDCCSETDTEGNDHLPDVRSSACFPAEMSKSDSGR 539
            A  L+  I  LKES+  + +A    +D CSETD+EG+ ++ + R +AC   +    +S R
Sbjct: 478  ASELKETIQNLKESEHAE-KAECSTQDECSETDSEGHANVSNDRPNACSSPQT--PNSLR 534

Query: 540  SKTLAGLEEVEDDEPLISFLRSSERLPKLKRAYVEKQNIPTEPRELTPKTLSKSTNSQQT 599
            S+ LA L+E  DD PLISFL+  +RL K K+    KQ+  T+    T K  S   +SQQT
Sbjct: 535  SERLADLDEANDDVPLISFLQPGKRLFKRKQV-SGKQDADTDQ---TKKDFSVVADSQQT 590

Query: 600  GGGRKRIRVVLSDDEGDIDNEEGLKGRLQKCP---------------------------V 632
              GRKRIRV+LSDDE + + E G       CP                            
Sbjct: 591  VAGRKRIRVILSDDESETEYELG-------CPKDSSHKVLRQNEEVSEESMYFDGAINYT 643

Query: 633  EGVATFDAINSKSGSASPAHKFQDVPAADFKCTNSSENPINVEESTCSHKFTSSNPTNQY 692
            +  A  D +   S S +P H  +  P     C + S N I VE +    K +  +  +  
Sbjct: 644  DNRAIQDNVEEGSCSYTPLHPIKVAPNVS-NCRSLSNN-IAVETTGRRKKGSQCDVGDSN 701

Query: 693  GNAIRCTGKV--FIASDVNDDQCVTFRIDDDLIHLEVHSCICDDKLDIESLKVELACLYY 750
            G + +    +  F A    +D+ +   I+++  H+ + SC  DD    ES+KVEL CLYY
Sbjct: 702  GTSCKTGAALVNFHAYSKTEDRKIKIEIENE--HIALDSCSHDD----ESVKVELTCLYY 755

Query: 751  LQLPKEKISKGLLPIIQHMKYGGR---SLESFDAFKDQLGKDIIEVSIDGWVQKRLMKLY 807
            LQLP ++ SKGLLPII H++YGGR    LE +   +D     +IE S+DGWV KRLMKLY
Sbjct: 756  LQLPDDEKSKGLLPIIHHLEYGGRVLKPLELYAILRDSSENVVIEASVDGWVHKRLMKLY 815

Query: 808  IECCKELSEAPNMKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKTVALLDLSH 867
            ++CC+ LSE P+MKLLKKLYISEVED++ VSECELQDIS  PLL ALH H  +A+LDLSH
Sbjct: 816  MDCCQSLSEKPSMKLLKKLYISEVEDDINVSECELQDISAAPLLCALHVH-NIAMLDLSH 874

Query: 868  NLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGN 927
            N+LGNGTMEKL+Q F SS Q Y  LTLDLHCNRFGPT LFQICECPVLFTRL VLN+S N
Sbjct: 875  NMLGNGTMEKLKQLFASSSQMYGALTLDLHCNRFGPTALFQICECPVLFTRLEVLNVSRN 934

Query: 928  RLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVT 987
            RLTDACGSYLSTI+KNC+ LYSLN+E+CS+TSRTIQKVA+AL ++S L+QLCIGYN+PV+
Sbjct: 935  RLTDACGSYLSTIVKNCRALYSLNVEHCSLTSRTIQKVANALDSKSGLSQLCIGYNNPVS 994

Query: 988  GNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSL 1047
            G++I NLL KL TL SF+EL++NG+KLS  VVD L  L KT  L+ L++G + +G+DG++
Sbjct: 995  GSSIQNLLAKLATLSSFAELSMNGIKLSSQVVDSLYALVKTPSLSKLLVGSSGIGTDGAI 1054

Query: 1048 QLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALA 1107
            ++ ESL  + +E+VKLDLS CGL S+   K    V+L   ILE N+GGNPI +EG +AL 
Sbjct: 1055 KVTESLCYQKEETVKLDLSCCGLASSFFIKLNQDVTLTSSILEFNVGGNPITEEGISALG 1114

Query: 1108 SLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNAS--KELTLQQNLS 1165
             LL NP   +KVL+LSKC L LAG+L +I+ALS+N  LEELNL+DNA    E    Q + 
Sbjct: 1115 ELLRNPCSNIKVLILSKCHLKLAGLLCIIQALSDNKNLEELNLSDNAKIEDETVFGQPVK 1174

Query: 1166 --SVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFD 1223
              SV  E      K+   + KE +     L   N +C+DLEVADSED++I   +A S   
Sbjct: 1175 ERSVMVEQEHGTCKSVTSMDKEQE-----LCETNMECDDLEVADSEDEQIEEGTATS--- 1226

Query: 1224 NSCTSSCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFSTQAVKTLYCAWSSRSG-A 1282
             S  S  +KN       V+ELS+A+ MA  L++LDLSNNGFS +A++TLY +WSS S   
Sbjct: 1227 -SSLSLPRKN-----HIVKELSTALSMANQLKILDLSNNGFSVEALETLYMSWSSSSSRT 1280

Query: 1283 GPAWKHIKEQIIHFSVEGNKCCRVKPCCRKN 1313
            G A +H+KE+ +HF VEG  CC VK CCRK+
Sbjct: 1281 GIAQRHVKEETVHFYVEGKMCCGVKSCCRKD 1311

Required for cell arrangement in root and shoot apical meristems. Involved in structural and functional stabilization of chromatin and may represent a link between response to DNA damage and epigenetic gene silencing.
Arabidopsis thaliana (taxid: 3702)

>sp|Q96AY4|TTC28_HUMAN Tetratricopeptide repeat protein 28 OS=Homo sapiens GN=TTC28 PE=1 SV=4

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 109/493 (22%), Positives = 222/493 (45%), Gaps = 53/493 (10%)

Query: 18  AKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEV 77
           AK+ GN++EEAR  + +G     R  + +A+ +     +++ + + +   +     LG  
Sbjct: 384 AKDLGNKREEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEKAIEMRAYAGLGHA 443

Query: 78  YLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAK 137
              ++  + A  Y  ++ L +A+D  D   + RA + LG  +    ++ D D      A 
Sbjct: 444 ARCMQDLERAKQYH-EQQLGIAEDLKDRAAEGRASSNLGIIHQ---MKGDYD-----TAL 494

Query: 138 KYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICN 197
           K  K+ + +AQ L +  A  R         A+ N+G     L   ++A K+  + L+I  
Sbjct: 495 KLHKTHLCIAQELSDYAAQGR---------AYGNMGNAYNALGMYDQAVKYHRQELQISM 545

Query: 198 EEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGE 257
           E     D   ++  H NL   Y  L   D++ +H +  + I +++   Q EA+   NLG 
Sbjct: 546 E---VNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNLGN 602

Query: 258 LHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNI-----------ETVKK----- 301
            H    +Y +A   Y++ L LA  ++D +    ++  N+           E VK      
Sbjct: 603 FHCSRGEYVQAAPYYEQYLRLAPDLQDMEG-EGKVCHNLGYAHYCLGNYQEAVKYYEQDL 661

Query: 302 --AIEVMDELKKEEQ--NLKKLTRNMIIAKGTSQERKYLLQQNASLD------RLIEKSS 351
             A ++ D+L + +   NL    + ++      + +KYLL    SL+      R +    
Sbjct: 662 ALAKDLHDKLSQAKAYCNLGLAFKALLNFSKAEECQKYLLSLAQSLNNSQAKFRALGNLG 721

Query: 352 MIFAWLK----HCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSW 407
            IF   K      ++ +++  +A ++ D+   + ++  +G +Y+ ++K++KA+ ++T+  
Sbjct: 722 DIFICKKDINGAIKFYEQQLGLAHQVKDRRLEASAYAALGTAYRMIQKYDKALGYHTQEL 781

Query: 408 EMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMH 467
           E+Y+ + +L G+  A  ++  V  + G +  A   ++E   +  +   PS++     NM 
Sbjct: 782 EVYQELSDLPGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLGQKLKDPSLEAQVYGNMG 841

Query: 468 YSHMIRFDNIEEA 480
            + M   + +EEA
Sbjct: 842 ITKM-NMNVMEEA 853

Homo sapiens (taxid: 9606)

>sp|Q0P5G1|TONSL_BOVIN Tonsoku-like protein OS=Bos taurus GN=TONSL PE=2 SV=1

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 99/374 (26%), Positives = 151/374 (40%), Gaps = 46/374 (12%)

Query: 714  VTFRIDDDLI-----HLEVHSCICDDKLDIESLKVELACLYYLQLPKEKISKGLLPIIQH 768
            V  R+ D+L      H E HS        +  L  + A  +Y        + GLLP +  
Sbjct: 932  VRVRVQDNLFLIPVPHREAHS--------VAWLAEQAAQRHY-------QASGLLPRLSL 976

Query: 769  MKYGGRSLESFDAFKDQL-GKDIIEVSIDGWVQKRLMKLYIECCKELSEAPNMKLLKKLY 827
             K G   L   D   D L   + +   +  W    L   Y   C+ L +  + ++L+ + 
Sbjct: 977  QKEGAL-LAPQDPIPDVLQSNEEVLAEVTSWDLPPLRDRYRRACQTLEQGEHQQVLQAVE 1035

Query: 828  ISEVEDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQ 887
                          L+   +TPLL AL  H  +  L L+ N LG+G + +L    +++  
Sbjct: 1036 HQGSAPTFSACSLALRQAQLTPLLRALKLHSALRELRLAGNRLGDGCVAEL----LATLD 1091

Query: 888  NYVDLTL-DLHCNRFGPTTLFQICEC---PVLFTRLGVLNLSGNRLTDACGSYLSTILKN 943
                LTL DL  N  GP  L Q+            L  L+LS N L D CG  L++IL+ 
Sbjct: 1092 TVPGLTLLDLSSNHLGPEGLRQLAAGLLGQTTLQNLEELDLSMNPLGDGCGQALASILRA 1151

Query: 944  CKVLYSLNIENCSITSRTIQKVADALGAE----STLAQLCIGYN-------SPVTGNAIT 992
            C VL +L+++ C            ALG+       L  L + YN        PV G+   
Sbjct: 1152 CPVLCTLHLQACGFGPGFFLSHQVALGSAFQDTKCLKTLSLSYNGLGPTALGPVLGSLPA 1211

Query: 993  NLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVES 1052
            + L++L+     +    + + L+ PVV  L Q  +   L HL L   +LG D  ++ +  
Sbjct: 1212 HSLLRLELSSVVT--GKSDVGLTDPVVHYLSQ--EGCVLEHLSLSANHLG-DKDVRALSR 1266

Query: 1053 LFSRAQESVKLDLS 1066
                    V LDLS
Sbjct: 1267 CLPLCPSLVSLDLS 1280

Component of the MMS22L-TONSL complex, a complex that stimulates the recombination-dependent repair of stalled or collapsed replication forks. The MMS22L-TONSL complex is required to maintain genome integrity during DNA replication by promoting homologous recombination-mediated repair of replication fork-associated double-strand breaks. It may act by mediating the assembly of RAD51 filaments on ssDNA. Within the complex, may act as a scaffold.

Bos taurus (taxid: 9913)

>sp|D4A615|TONSL_RAT Tonsoku-like protein OS=Rattus norvegicus GN=Tonsl PE=3 SV=1

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 101/372 (27%), Positives = 151/372 (40%), Gaps = 42/372 (11%)

Query: 714  VTFRIDDDLIHLEV-HSCICDDKLDIESLK--VELACLYYLQLPKEKISKGLLPIIQHMK 770
            V  +I D+L  + V HS       D+ S+    E A   Y Q      + GLLP +  ++
Sbjct: 929  VRVQIQDNLFLIPVPHS-------DVHSVAWLAEQAAQRYFQ------TCGLLPRLT-LR 974

Query: 771  YGGRSLESFDAFKDQL-GKDIIEVSIDGWVQKRLMKLYIECCKELSEAPNMKLLKKLYIS 829
              G  L   D   D L   D +   +  W    L   Y   C+ L +  + ++L+ +   
Sbjct: 975  KDGALLAPQDPIPDVLQSNDEVMAEVTSWDLPPLKDRYRRACQSLGQGEHQQVLQAMEHQ 1034

Query: 830  EVEDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNY 889
                        L    +TPLL AL  H  +  L LS N LG+    +L    + +  N 
Sbjct: 1035 SSSPSFSACSLALCQAQLTPLLRALKLHTALRELRLSGNRLGDPCATELLAT-LGTMPNL 1093

Query: 890  VDLTLDLHCNRFGPTTLFQICECPV---LFTRLGVLNLSGNRLTDACGSYLSTILKNCKV 946
            V   LDL  N  GP  L Q+ E  +    F  +  L+LS N L D C   L+++L+ C V
Sbjct: 1094 V--LLDLSSNHLGPEGLRQLVEGSLGQTAFQNVEELDLSMNPLGDGCAQALASLLRTCPV 1151

Query: 947  LYSLNIENCSITSRTIQKVADALGA----ESTLAQLCIGYNSPVTGNAITNLLVKLDTLK 1002
            L +L ++ C  +         ALG+       L  L + YN+ +   A+  +L  L T  
Sbjct: 1152 LRTLRLQACGFSPSFFLSHQAALGSAFKDAEHLKTLSLSYNT-LGAPALARVLQSLPTC- 1209

Query: 1003 SFSELNLNGLKLSK-------PVVDRLCQLAKTSC-LTHLMLGCTNLGSDGSLQLVESLF 1054
            +   L L+ +  SK       PV+     L K  C L HL L   N  SD +++ +    
Sbjct: 1210 TLLHLELSSVAASKSNSSLIEPVIK---YLTKEGCALAHLTLS-ANCLSDKAVRELSRCL 1265

Query: 1055 SRAQESVKLDLS 1066
                    LDLS
Sbjct: 1266 PSCPSLTSLDLS 1277

Component of the MMS22L-TONSL complex, a complex that stimulates the recombination-dependent repair of stalled or collapsed replication forks. The MMS22L-TONSL complex is required to maintain genome integrity during DNA replication by promoting homologous recombination-mediated repair of replication fork-associated double-strand breaks. It may act by mediating the assembly of RAD51 filaments on ssDNA. Within the complex, may act as a scaffold.

Rattus norvegicus (taxid: 10116)

>sp|A9JR78|TONSL_DANRE Tonsoku-like protein OS=Danio rerio GN=tonsl PE=2 SV=1

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 124/286 (43%), Gaps = 60/286 (20%)

Query: 7   QMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFR-------IDYDVSV 59
           ++ + ++A   A+   N +EEA   N +G++    G+Y  A++  R       I +DV  
Sbjct: 6   EIKQLQKAKSKAQSSNNLKEEASLCNQLGEVYAKTGDYQAAIEEHRQELALSEILHDVIG 65

Query: 60  KYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTY 119
             +  +        +GE Y  L + + AL +Q + HL LA+   D  E+QRA   +GRTY
Sbjct: 66  SAVANR-------KIGECYAELGNIEAALKHQ-RLHLNLARSVHDAAEEQRALATIGRTY 117

Query: 120 YEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMEL 179
             +F  SD    S+++A+  FK ++ +     E   + R                     
Sbjct: 118 LFLF-DSDQSANSLKHAEDAFKRSLAIVDERLEGTVSPR--------------------- 155

Query: 180 DNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIIC 239
                               E+SE    ++RL  NLG VY  ++   +  + I Q I I 
Sbjct: 156 --------------------EISE---MKARLLLNLGCVYDGMKEPQRCSDLIRQSIYIA 192

Query: 240 KKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDE 285
           +K    +   +   NLG +H+R  ++  A+ C++++   A+ M+D+
Sbjct: 193 EKNNLLEDLYRANFNLGSIHFRNGQHSRAMRCFEQSKECARKMKDK 238

Component of the MMS22L-TONSL complex, a complex that stimulates the recombination-dependent repair of stalled or collapsed replication forks.

Danio rerio (taxid: 7955)

>sp|Q96HA7|TONSL_HUMAN Tonsoku-like protein OS=Homo sapiens GN=TONSL PE=1 SV=2

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 143/380 (37%), Gaps = 51/380 (13%)

Query: 761  GLLPIIQHMKYGGRSLESFDAFKDQL-GKDIIEVSIDGWVQKRLMKLYIECCKELSEAPN 819
            GLLP +  ++  G  L   D   D L   D +   +  W    L   Y   C+ L +  +
Sbjct: 973  GLLPRLT-LRKEGALLAPQDLIPDVLQSNDEVLAEVTSWDLPPLTDRYRRACQSLGQGEH 1031

Query: 820  MKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQ 879
             ++L+ + +  +          L    +TPLL AL  H  +  L L+ N LG+  + +L 
Sbjct: 1032 QQVLQAVELQGLGLSFSACSLALDQAQLTPLLRALKLHTALRELRLAGNRLGDKCVAEL- 1090

Query: 880  QFFISSCQNYVDLT-LDLHCNRFGPTTLFQIC---ECPVLFTRLGVLNLSGNRLTDACGS 935
               +++      L  LDL  N  GP  L Q+            L  L+LS N L D CG 
Sbjct: 1091 ---VAALGTMPSLALLDLSSNHLGPEGLRQLAMGLPGQATLQSLEELDLSMNPLGDGCGQ 1147

Query: 936  YLSTILKNCKVLYSLNIENCSITSRTIQKVADALGA----ESTLAQLCIGYNSPVTGNAI 991
             L+++L  C +L +L ++ C            ALG+       L  L + YN+       
Sbjct: 1148 SLASLLHACPLLSTLRLQACGFGPSFFLSHQTALGSAFQDAEHLKTLSLSYNA------- 1200

Query: 992  TNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVE 1051
                                  L  P + R  Q      L HL L     G  G   L+E
Sbjct: 1201 ----------------------LGAPALARTLQSLPAGTLLHLELSSVAAGK-GDSDLME 1237

Query: 1052 SLFSR-AQES---VKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGA--NA 1105
             +F   A+E      L LS   L    +      +SL   ++ L+L  NP +   +    
Sbjct: 1238 PVFRYLAKEGCALAHLTLSANHLGDKAVRDLCRCLSLCPSLISLDLSANPEISCASLEEL 1297

Query: 1106 LASLLMNPQCCLKVLVLSKC 1125
            L++L   PQ  L  L LS C
Sbjct: 1298 LSTLQKRPQ-GLSFLGLSGC 1316

Component of the MMS22L-TONSL complex, a complex that stimulates the recombination-dependent repair of stalled or collapsed replication forks. The MMS22L-TONSL complex is required to maintain genome integrity during DNA replication by promoting homologous recombination-mediated repair of replication fork-associated double-strand breaks. It may act by mediating the assembly of RAD51 filaments on ssDNA. Within the complex, may act as a scaffold.

Homo sapiens (taxid: 9606)

>sp|Q80XJ3|TTC28_MOUSE Tetratricopeptide repeat protein 28 OS=Mus musculus GN=Ttc28 PE=2 SV=2

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/370 (20%), Positives = 167/370 (45%), Gaps = 29/370 (7%)

Query: 81  LEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYF 140
           ++ +  AL Y  ++ LE+ ++ SDL  + RA   L   Y  +        Y++  A K +
Sbjct: 2   VQKYDKALGYHTQE-LEVYQELSDLPGECRAHGHLAAVYMAL------GKYTM--AFKCY 52

Query: 141 KSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEE 200
           +  ++L + LKE    ++          + N+G+ +M ++ +E+A  +  + L +  +  
Sbjct: 53  QEQLELGRKLKEPSLEAQ---------VYGNMGITKMNMNVMEDAIGYFEQQLAMLQQLS 103

Query: 201 VSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHY 260
            +E    R R + NLG+ Y  L  ++++ ++ EQ + + + +   Q +AK Y  LG  H 
Sbjct: 104 GNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLGNGHR 163

Query: 261 RVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLT 320
                 +A++C++K L +A  +        +     +   +   +  +L   EQ +  L 
Sbjct: 164 ATGSLQQALVCFEKRLVVAHEL-------GEASNKAQAYGELGSLHSQLGNYEQAISCLE 216

Query: 321 RNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLS 380
           R + IA+     +   L+ +A+   L      +  +    +Y +   +IA E  +     
Sbjct: 217 RQLNIARDM---KDRALESDAACG-LGGVYQQMGEYDTALQYHQLDLQIAEETDNPTCQG 272

Query: 381 DSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGAL 440
            ++  +G +Y+ L  F +A+ +  +   +   + +L  + ++  ++G    +  +++ A+
Sbjct: 273 RAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLVAKTVSYSSLGRTHHALQNYSQAV 332

Query: 441 DAFQEGYRIA 450
              QEG R+A
Sbjct: 333 MYLQEGLRLA 342

Mus musculus (taxid: 10090)

>sp|Q6NZL6|TONSL_MOUSE Tonsoku-like protein OS=Mus musculus GN=Tonsl PE=2 SV=2

 Score = 67.8 bits (164), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 118/298 (39%), Gaps = 25/298 (8%)

Query: 761  GLLPIIQHMKYGGRSLESFDAFKDQL-GKDIIEVSIDGWVQKRLMKLYIECCKELSEAPN 819
            GLLP +  ++  G  L   D   D L   D +   +  W    L   Y   C  L +  +
Sbjct: 962  GLLPRLT-LRKDGALLAPQDPIPDVLQSNDEVLAEVTSWDLPPLKDRYRRACLSLGQGEH 1020

Query: 820  MKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQ 879
             ++L  +               L    +TPLL AL  H  +  L L+ N LG+    +L 
Sbjct: 1021 QQVLHAMDHQSSSPSFSACSLALCQAQLTPLLRALKLHTALRELRLAGNRLGDACATELL 1080

Query: 880  QFFISSCQNYVDLTLDLHCNRFGPTTLFQICECP---VLFTRLGVLNLSGNRLTDACGSY 936
               + +  N V   LDL  N  G   L Q+ E          L  L+LS N L D CG  
Sbjct: 1081 AT-LGTTPNLV--LLDLSSNHLGQEGLRQLVEGSSGQAALQNLEELDLSMNPLGDGCGQA 1137

Query: 937  LSTILKNCKVLYSLNIENCSITSRTIQKVADALGAEST----LAQLCIGYNSPVTGNAIT 992
            L+++L+ C +L +L ++ C  +S        ALG        L  L + YN  +   A+ 
Sbjct: 1138 LASLLRACPMLSTLRLQACGFSSSFFLSHQAALGGAFQDAVHLKTLSLSYNL-LGAPALA 1196

Query: 993  NLLVKLDTLKSFSELNLNGLKLSK-------PVVDRLCQLAKTSC-LTHLMLGCTNLG 1042
             +L  L    +   L+L+ +  SK       PV+     L K  C L HL L    LG
Sbjct: 1197 RVLQTLPAC-TLKRLDLSSVAASKSNSGIIEPVIK---YLTKEGCALAHLTLSANCLG 1250

Component of the MMS22L-TONSL complex, a complex that stimulates the recombination-dependent repair of stalled or collapsed replication forks. The MMS22L-TONSL complex is required to maintain genome integrity during DNA replication by promoting homologous recombination-mediated repair of replication fork-associated double-strand breaks. It may act by mediating the assembly of RAD51 filaments on ssDNA. Within the complex, may act as a scaffold.

Mus musculus (taxid: 10090)

>sp|Q9R080|GPSM1_RAT G-protein-signaling modulator 1 OS=Rattus norvegicus GN=Gpsm1 PE=1 SV=2

 Score = 60.8 bits (146), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 107/238 (44%), Gaps = 11/238 (4%)

Query: 202 SEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYR 261
           +ED    S ++  LGN Y  L+ + ++ +  + D+++ + I    GEAK   NLG     
Sbjct: 59  TEDLKTLSAIYSQLGNAYFYLKEYARALQFHKHDLLLARTIGDRMGEAKASGNLGNTLKV 118

Query: 262 VQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETV--KKAIEVMDELKKEEQNLKKL 319
           + ++DEAI+C Q+ L++AQ   D+   A  +  NI  V   K  ++     ++  +L   
Sbjct: 119 LGRFDEAIVCCQRHLDIAQEQGDKVGEARAL-YNIGNVYHAKGKQLSWNAAQDPGHLPPD 177

Query: 320 TRNMIIAKGTSQERKYLL--------QQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIAS 371
            R  +       ER   L         Q  +   L     ++  + +   + K +  IA 
Sbjct: 178 VRETLHRASEFYERNLSLVKELGDRAAQGRAYGNLGNTHYLLGNFTEATTFHKERLAIAK 237

Query: 372 ELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNV 429
           E  DK     ++  +G ++  L +F+ A + Y K+ ++ + I +   +A A  ++GN 
Sbjct: 238 EFGDKAAERRAYSNLGNAHIFLGRFDVAAEHYKKTLQLSRQIRDQAVEAQACYSLGNT 295

Guanine nucleotide dissociation inhibitor (GDI) which functions as a receptor-independent activator of heterotrimeric G-protein signaling. Keeps G(i/o) alpha subunit in its GDP-bound form thus uncoupling heterotrimeric G-proteins signaling from G protein-coupled receptors. Controls spindle orientation and asymmetric cell fate of cerebral cortical progenitors. May also be involved in macroautophagy in intestinal cells. May play a role in drug addiction.

Rattus norvegicus (taxid: 10116)

>sp|Q6IR34|GPSM1_MOUSE G-protein-signaling modulator 1 OS=Mus musculus GN=Gpsm1 PE=1 SV=3

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 107/238 (44%), Gaps = 11/238 (4%)

Query: 202 SEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYR 261
           +ED    S ++  LGN Y  L+ + ++ +  + D+++ + I    GEAK   NLG     
Sbjct: 59  TEDLKTLSAIYSQLGNAYFYLKEYARALQFHKHDLLLARTIGDRMGEAKASGNLGNTLKV 118

Query: 262 VQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETV--KKAIEVMDELKKEEQNLKKL 319
           + ++DEAI+C Q+ L++AQ   D+   A  +  NI  V   K  ++     ++  +L   
Sbjct: 119 LGRFDEAIVCCQRHLDIAQEQGDKVGEARAL-YNIGNVYHAKGKQLSWNAAQDPGHLPPD 177

Query: 320 TRNMIIAKGTSQERKYLL--------QQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIAS 371
            R  +       ER   L         Q  +   L     ++  + +   + K +  IA 
Sbjct: 178 VRETLHRASEFYERNLSLVKELGDRAAQGRAYGNLGNTHYLLGNFTEATTFHKERLAIAK 237

Query: 372 ELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNV 429
           E  DK     ++  +G ++  L +F+ A + Y K+ ++ + + +   +A A  ++GN 
Sbjct: 238 EFGDKAAERRAYSNLGNAHIFLGRFDVAAEHYKKTLQLSRQLRDQAVEAQACYSLGNT 295

Guanine nucleotide dissociation inhibitor (GDI) which functions as a receptor-independent activator of heterotrimeric G-protein signaling. Keeps G(i/o) alpha subunit in its GDP-bound form thus uncoupling heterotrimeric G-proteins signaling from G protein-coupled receptors. Controls spindle orientation and asymmetric cell fate of cerebral cortical progenitors. May also be involved in macroautophagy in intestinal cells. May play a role in drug addiction.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1313
224093342	1353	predicted protein [Populus trichocarpa]	0.996	0.967	0.672	0.0
225431545	1309	PREDICTED: protein TONSOKU-like [Vitis v	0.984	0.987	0.676	0.0
296088584	1342	unnamed protein product [Vitis vinifera]	0.979	0.958	0.659	0.0
255552346	1327	brushy protein, putative [Ricinus commun	0.982	0.972	0.643	0.0
356528540	1318	PREDICTED: protein TONSOKU-like [Glycine	0.972	0.968	0.607	0.0
449461883	1342	PREDICTED: protein TONSOKU-like [Cucumis	0.989	0.967	0.608	0.0
449516822	1342	PREDICTED: LOW QUALITY PROTEIN: protein	0.989	0.967	0.606	0.0
356511155	1301	PREDICTED: protein TONSOKU-like [Glycine	0.959	0.968	0.602	0.0
65736533	1370	TONSOKU protein [Nicotiana tabacum]	0.993	0.951	0.560	0.0
84782444	1311	TPA: 3g18730 protein [Arabidopsis thalia	0.969	0.971	0.551	0.0

>gi|224093342|ref|XP_002309890.1| predicted protein [Populus trichocarpa] gi|222852793|gb|EEE90340.1| predicted protein [Populus trichocarpa]

 Score = 1791 bits (4639), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 911/1355 (67%), Positives = 1064/1355 (78%), Gaps = 46/1355 (3%)

Query: 1    MGRDEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVK 60
            + ++E +M  AKRA+ +A+E GN QEEARWAN+IGD+ KNRGEYV+ALKW RIDY++S K
Sbjct: 3    ISKEEQEMQTAKRAFVNAREVGNHQEEARWANLIGDMYKNRGEYVKALKWLRIDYEISNK 62

Query: 61   YLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYY 120
            YLPEK LLPTCQS+G+VYLRL  FK AL+YQ KKHL+LAKDA+DLVEQQRA TQLGRTY+
Sbjct: 63   YLPEKQLLPTCQSIGDVYLRLHDFKHALVYQ-KKHLDLAKDANDLVEQQRASTQLGRTYH 121

Query: 121  EMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELD 180
            EMFL+SD+DH SIRNAKKYFKSAMKLAQ+LKENP T++SSFLKEYIDAHNNIGM++M+LD
Sbjct: 122  EMFLKSDNDHSSIRNAKKYFKSAMKLAQSLKENPHTNKSSFLKEYIDAHNNIGMIEMDLD 181

Query: 181  NLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK 240
            NLEEAKK L RGLEIC+EEEV  DDDGRSRLHHNLGNVYMEL++WDK++EHI++DI IC 
Sbjct: 182  NLEEAKKILARGLEICDEEEVDADDDGRSRLHHNLGNVYMELKVWDKAQEHIKKDIRICN 241

Query: 241  KIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVK 300
            +I HCQGEAKGYINLGELHYR QKY+EA LCY KAL+LA+SMEDED L  +I  NI TVK
Sbjct: 242  RIGHCQGEAKGYINLGELHYRAQKYEEANLCYHKALDLAKSMEDEDTLVKEIGHNIGTVK 301

Query: 301  KAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHC 360
            +A++VMDELKKEEQNLKKLTR+++ A+GT  ERK LLQQNASLD LIEKSS+I AW KH 
Sbjct: 302  EAMKVMDELKKEEQNLKKLTRSIVTARGTHHERKCLLQQNASLDCLIEKSSIILAWSKHH 361

Query: 361  EYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQA 420
            E+AKRKKRIASELCDK KL DSFL++GESYQKLRKF KAIKW+ KSWE YKSI NLEGQA
Sbjct: 362  EFAKRKKRIASELCDKEKLGDSFLLLGESYQKLRKFKKAIKWFMKSWETYKSISNLEGQA 421

Query: 421  LAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEA 480
            LAK+N+G+VLD +GDW GAL+AF+EGYRIAV ANLPSVQLSALENMHYSHMIRFDN EEA
Sbjct: 422  LAKINIGDVLDCDGDWMGALNAFEEGYRIAVNANLPSVQLSALENMHYSHMIRFDNEEEA 481

Query: 481  RRLQHEIDKLKESKSEDLEAYDVARDCCSETDTEGNDHLPDVRSSACFPAEMSKSDSGRS 540
            RRLQHEI++LK SK+ +LE  ++A DCCSETDT+G+DHL D RS+A    E++KS S RS
Sbjct: 482  RRLQHEIERLK-SKNTELERQNLATDCCSETDTDGDDHLSDCRSNASCSQEINKSGSARS 540

Query: 541  KTLAGLEEVEDDEPLISFLRSSERLPKLKRAYVEKQNIPTEPRELTPKTLSKSTNSQQTG 600
            K+LAG E ++DD PLIS LRS +  P  K    E  N  T P E +PK  SK+ + QQT 
Sbjct: 541  KSLAGAEGLDDDLPLISLLRSHKNSPGTKSTQEEMHNTSTWPTEASPKCFSKTASDQQTV 600

Query: 601  GGRKRIRVVLSDDEGDI-DNEEGLKGRLQKCPVEGVATFDAINSKSGSASPAHKFQDVPA 659
              RKRIR+VLSDDE ++ DN +G + RL +CP E VAT +     S  A  A  FQ V  
Sbjct: 601  LSRKRIRIVLSDDEDEMHDNVDGSRERLNRCPPEDVATSNGFMGASNPAISACAFQGVST 660

Query: 660  ADFKCTNSSENPINVEESTCSHKFTSSNPTNQYGNAIRCTG--KVFIASDV--------- 708
               KC  SS NP N EEST S+K  S       G   R +   +V  A D+         
Sbjct: 661  VASKCATSSWNPNNNEESTSSYKSQSPKIVTPKGKVFRSSSNNEVVFACDLAASGSKCDV 720

Query: 709  --------------------NDDQCVTFRIDDDLIHLEVHSCICDDKLDIESLKVELACL 748
                                +D+QC+ FRID+DLI ++  S +  DKL IES+ VELACL
Sbjct: 721  SENLTHKNNAAHLRLHNSENDDNQCIVFRIDNDLIQVDAASYLAFDKLSIESMTVELACL 780

Query: 749  YYLQLPKEKISKGLLPIIQHMKYGGR---SLESFDAFKDQLGKDIIEVSIDGWVQKRLMK 805
            YYLQLP EK SKGLLPI+QHMK  GR   S+E+F+  K   G  +IEVSI+GWVQKRLMK
Sbjct: 781  YYLQLPTEKRSKGLLPIVQHMKCHGRVLDSIEAFETLKGDQGNILIEVSINGWVQKRLMK 840

Query: 806  LYIECCKELSEAPNMKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKTVALLDL 865
            LYI+CC+ELSEAPNMKLLKKLYISEVEDEVI SECELQDISVTPLLNAL THKTVA++DL
Sbjct: 841  LYIDCCEELSEAPNMKLLKKLYISEVEDEVIGSECELQDISVTPLLNALDTHKTVAVIDL 900

Query: 866  SHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLS 925
            SHN LGNGTMEKLQQ F++S Q Y DLTLDLHCNRFGPT LFQICECPVLF RL VLN+S
Sbjct: 901  SHNFLGNGTMEKLQQ-FLTSGQKYGDLTLDLHCNRFGPTALFQICECPVLFARLEVLNIS 959

Query: 926  GNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSP 985
            GNRLTDACGSYLSTIL+NC+ LYSLNIE CSIT+R+IQKVADAL A   LAQL IGYN+P
Sbjct: 960  GNRLTDACGSYLSTILENCRALYSLNIERCSITTRSIQKVADALNASLVLAQLSIGYNNP 1019

Query: 986  VTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDG 1045
            V+GNAI NLL KL TLKSF+ LNL+GLKL+KPVVD LCQLAKTSCL+ LMLG T +G+DG
Sbjct: 1020 VSGNAIINLLAKLATLKSFAALNLSGLKLTKPVVDSLCQLAKTSCLSRLMLGSTGIGTDG 1079

Query: 1046 SLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANA 1105
            +LQL  SLF  +QESVKLDLSYCGL     H  +   +L+ GILELNL GNPIM+EG NA
Sbjct: 1080 ALQLTASLFEGSQESVKLDLSYCGLMPAYTHMLSTD-TLICGILELNLAGNPIMQEGTNA 1138

Query: 1106 LASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKELTLQQNLS 1165
            + SLL NPQCCLKVLVL+KCQLGL G+LQ+I+AL+END LEEL+LADNA+ E T      
Sbjct: 1139 MVSLLTNPQCCLKVLVLNKCQLGLTGILQMIQALAENDCLEELHLADNANLEKTYMIQYD 1198

Query: 1166 SVN---SENLQPALKTSD----CVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESA 1218
            S     S+ LQP L  S+     V KE D+D+ G+  MNT+CN LEVADSED  IR E+A
Sbjct: 1199 STKGSCSDILQPNLNKSESSKMSVPKESDSDKQGVCVMNTECNQLEVADSEDGPIRAEAA 1258

Query: 1219 ASGFDNSCTSSCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFSTQAVKTLYCAWSS 1278
             S FD+SCTSSCQKNS  ECQF+QEL++AI MAK LQ ++L NNGF+TQ  + LY AWSS
Sbjct: 1259 PSDFDDSCTSSCQKNSLLECQFIQELTTAISMAKQLQFMELGNNGFTTQVAEALYTAWSS 1318

Query: 1279 RSGAGPAWKHIKEQIIHFSVEGNKCCRVKPCCRKN 1313
            R   G AW+HI++Q IHFS+E NKCCR KPCCR++
Sbjct: 1319 RLENGLAWRHIEDQTIHFSMETNKCCRAKPCCRRD 1353

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431545|ref|XP_002275533.1| PREDICTED: protein TONSOKU-like [Vitis vinifera]

 Score = 1757 bits (4550), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 900/1330 (67%), Positives = 1062/1330 (79%), Gaps = 38/1330 (2%)

Query: 1    MGRDEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVK 60
            M RD+ Q+S AKRAYR+A  EGNRQEEARWAN+IGDI KNRGEYVEALKW RIDYD+S+K
Sbjct: 1    MVRDDPQLSAAKRAYRNASMEGNRQEEARWANLIGDIFKNRGEYVEALKWLRIDYDISMK 60

Query: 61   YLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYY 120
            YLPEK LLPTCQS+GE+ LRLE+FKDALIYQ KKHLELAKD +DLVEQQRA TQLGRTY+
Sbjct: 61   YLPEKQLLPTCQSVGELLLRLENFKDALIYQ-KKHLELAKDTNDLVEQQRASTQLGRTYH 119

Query: 121  EMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELD 180
            E+FL SDDDHYS+RNAKKYFKSAM+LAQTLKENP +++SSFLKE+IDAHNNIGML+M+LD
Sbjct: 120  EIFLSSDDDHYSVRNAKKYFKSAMRLAQTLKENPPSNKSSFLKEFIDAHNNIGMLEMDLD 179

Query: 181  NLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK 240
            NLEEA K L +GL+IC+EEEV +DDDGRSRLHHNLG VYMELR WDK+REHIE+DIIICK
Sbjct: 180  NLEEAHKILTKGLKICDEEEVIDDDDGRSRLHHNLGRVYMELRKWDKAREHIEKDIIICK 239

Query: 241  KIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVK 300
            +I H QGEAKGYINLGELHYRVQKY+EA LCYQKAL+LA+SMEDEDAL SQID+NI TVK
Sbjct: 240  RIGHFQGEAKGYINLGELHYRVQKYEEANLCYQKALDLAKSMEDEDALVSQIDENIVTVK 299

Query: 301  KAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHC 360
            KA++VM +++KEEQNLKKL RNM  A+GT  ER+ LLQQNASLD LIEKSSMIFAWLKH 
Sbjct: 300  KAVKVMADMQKEEQNLKKLARNMATARGTPGERRCLLQQNASLDLLIEKSSMIFAWLKHR 359

Query: 361  EYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQA 420
            E+AKRKKRIA+ELCDK KLSDSFLVIGESYQKLR F+KA+KWYTKSWE YKSI NLEGQA
Sbjct: 360  EFAKRKKRIANELCDKEKLSDSFLVIGESYQKLRNFDKALKWYTKSWETYKSINNLEGQA 419

Query: 421  LAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEA 480
            LAK+N+G+VLDS+G+WAGALDAF+EGYRIAV+ NLPSVQLSALENMHYSHMIRFDN+EEA
Sbjct: 420  LAKINIGDVLDSDGNWAGALDAFEEGYRIAVQENLPSVQLSALENMHYSHMIRFDNLEEA 479

Query: 481  RRLQHEIDKLKESKSEDLEAYDVARDCCSETDTEGNDHLPDVRSSACFPAEMSKSDSGRS 540
            RRLQ+ IDKLK+S +E  E  ++A DCCSETDTE +D L + RS      +  KS S R 
Sbjct: 480  RRLQYLIDKLKQSGNEKHEGRNIAEDCCSETDTERDDCLSNSRSDPSCSVKKGKSKSDRG 539

Query: 541  KTLAGLEEVEDDEPLISFLRSSERLPKLKRAYVEKQNIPTEPRELTPKTLSKSTNSQQTG 600
                   E +DD PLIS L+S+++LPK   A+V++      P   + K+ S ST++QQT 
Sbjct: 540  -------EFKDDVPLISLLQSNKKLPKWNIAHVDE----VLPTGASHKSSSTSTSNQQT- 587

Query: 601  GGRKRIRVVLSDDEGDIDNEEGLK----GRLQKCPVEGVATFDAINSKSGSASPAHKFQD 656
             GRKR+RVVLSDDEG++ +E        GRL KCPVE V   D   +++  ASPA  FQD
Sbjct: 588  VGRKRVRVVLSDDEGEMQDEVACSNFECGRLHKCPVEDVGATDEFKNRTDLASPASGFQD 647

Query: 657  VPAADFKCTNSSENPINVEESTCSHKFTSSNPTNQYGNAIRCTGKVFIASDVNDDQCVTF 716
            V A   KC  SS  P+ +EEST S+K  + N  +     +  +   +        Q + F
Sbjct: 648  VSAIPSKCAISSSTPMILEESTSSYKLRTPNKHSAADLKLHTSEGAY-------GQYIAF 700

Query: 717  RIDDDLIHLEVHSCICDDKLDIESLKVELACLYYLQLPKEKISKGLLPIIQHMKYGGRSL 776
            +I++DLI +E   C+ DD L IESLKVE+ACLYYLQLP +K S+GLLPIIQHM+ GG++L
Sbjct: 701  KIENDLIQIEAAPCMVDDMLSIESLKVEVACLYYLQLPVDKRSRGLLPIIQHMRCGGKAL 760

Query: 777  ESFDA---FKDQLGKDIIEVSIDGWVQKRLMKLYIECCKELSEAPNMKLLKKLYISEV-E 832
            ESF+A   FKD LG   +EV +DGWVQKRL+KLY++CCKELSE PN+KLLKKLY  EV E
Sbjct: 761  ESFEAIGTFKDTLGNGWVEVFVDGWVQKRLIKLYVDCCKELSETPNIKLLKKLYNLEVSE 820

Query: 833  DEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDL 892
            DEV+VSEC+LQDIS+ PLLNALH HKT+A+LDLSHN+LGNGTMEKLQQ FISS Q Y  L
Sbjct: 821  DEVMVSECDLQDISIMPLLNALHVHKTIAMLDLSHNMLGNGTMEKLQQVFISSGQKYGGL 880

Query: 893  TLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNI 952
             LDLHCNRFGPTTLFQICECPVLF RL VLN+SGNRLTDACGSYLSTIL+ CK LY LNI
Sbjct: 881  ALDLHCNRFGPTTLFQICECPVLFARLEVLNISGNRLTDACGSYLSTILEKCKALYYLNI 940

Query: 953  ENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGL 1012
            E CSITSRT+QKVADAL ++S LAQLC+G+N+P++GN+I NL+ KL TL+ FSELNLNGL
Sbjct: 941  ERCSITSRTVQKVADALDSQSVLAQLCLGHNNPISGNSIMNLMGKLSTLERFSELNLNGL 1000

Query: 1013 KLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLES 1072
            KLSK VVD LCQL K+SCL+ LMLG +++G+DG+LQL +SLFS AQE VKLDLSYCGL S
Sbjct: 1001 KLSKTVVDSLCQLVKSSCLSGLMLGGSSIGTDGALQLTKSLFSGAQELVKLDLSYCGLTS 1060

Query: 1073 TCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGV 1132
              I    A V +V GILE+NLGGNP+M++G +ALASLLMNP CCLKVLVL+ CQLGLAGV
Sbjct: 1061 EYITNLNAEVPMVGGILEINLGGNPVMQKGGSALASLLMNPHCCLKVLVLNNCQLGLAGV 1120

Query: 1133 LQLIKALSENDTLEELNLADNA--SKELTLQQNLSSVNSENLQPAL------KTSDCVSK 1184
            LQ+I+ALSEND+LEELN+A NA   +  T Q NL ++ S    P +          CV K
Sbjct: 1121 LQIIQALSENDSLEELNVAGNADLDRHCTSQNNLKALESSETFPQILNISVSSPKVCVLK 1180

Query: 1185 EVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFDNSCTSSCQKNSSF-ECQFVQE 1243
            EV   Q G   MNTD N LEVADSEDD I  E AAS +D+SCT+SC++   F E +F+Q 
Sbjct: 1181 EVAAAQEGSCIMNTDYNQLEVADSEDDPITAEPAAS-YDDSCTNSCKRMLQFSESEFIQG 1239

Query: 1244 LSSAIGMAKPLQLLDLSNNGFSTQAVKTLYCAWSSRSGAGPAWKHIKEQIIHFSVEGNKC 1303
            LS+AIGMAK LQLLDLSNNGFSTQ  +T+Y AWS  S +G A +HIKEQ +H  V G KC
Sbjct: 1240 LSTAIGMAKKLQLLDLSNNGFSTQDTETIYTAWSLGSRSGLAQRHIKEQTVHLLVRGQKC 1299

Query: 1304 CRVKPCCRKN 1313
            C VKPCC+++
Sbjct: 1300 CGVKPCCKRD 1309

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088584|emb|CBI37575.3| unnamed protein product [Vitis vinifera]

 Score = 1734 bits (4492), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 903/1369 (65%), Positives = 1069/1369 (78%), Gaps = 83/1369 (6%)

Query: 1    MGRDEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVK 60
            M RD+ Q+S AKRAYR+A  EGNRQEEARWAN+IGDI KNRGEYVEALKW RIDYD+S+K
Sbjct: 1    MVRDDPQLSAAKRAYRNASMEGNRQEEARWANLIGDIFKNRGEYVEALKWLRIDYDISMK 60

Query: 61   YLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYY 120
            YLPEK LLPTCQS+GE+ LRLE+FKDALIYQ KKHLELAKD +DLVEQQRA TQLGRTY+
Sbjct: 61   YLPEKQLLPTCQSVGELLLRLENFKDALIYQ-KKHLELAKDTNDLVEQQRASTQLGRTYH 119

Query: 121  EMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELD 180
            E+FL SDDDHYS+RNAKKYFKSAM+LAQTLKENP +++SSFLKE+IDAHNNIGML+M+LD
Sbjct: 120  EIFLSSDDDHYSVRNAKKYFKSAMRLAQTLKENPPSNKSSFLKEFIDAHNNIGMLEMDLD 179

Query: 181  NLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK 240
            NLEEA K L +GL+IC+EEEV +DDDGRSRLHHNLG VYMELR WDK+REHIE+DIIICK
Sbjct: 180  NLEEAHKILTKGLKICDEEEVIDDDDGRSRLHHNLGRVYMELRKWDKAREHIEKDIIICK 239

Query: 241  KIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVK 300
            +I H QGEAKGYINLGELHYRVQKY+EA LCYQKAL+LA+SMEDEDAL SQID+NI TVK
Sbjct: 240  RIGHFQGEAKGYINLGELHYRVQKYEEANLCYQKALDLAKSMEDEDALVSQIDENIVTVK 299

Query: 301  KAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHC 360
            KA++VM +++KEEQNLKKL RNM  A+GT  ER+ LLQQNASLD LIEKSSMIFAWLKH 
Sbjct: 300  KAVKVMADMQKEEQNLKKLARNMATARGTPGERRCLLQQNASLDLLIEKSSMIFAWLKHR 359

Query: 361  EYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQA 420
            E+AKRKKRIA+ELCDK KLSDSFLVIGESYQKLR F+KA+KWYTKSWE YKSI NLEGQA
Sbjct: 360  EFAKRKKRIANELCDKEKLSDSFLVIGESYQKLRNFDKALKWYTKSWETYKSINNLEGQA 419

Query: 421  LAKVNMGNVLDSNGDWAGALDAFQEGYR--------IAVEANLPSVQLSALENMHYSHMI 472
            LAK+N+G+VLDS+G+WAGALDAF+EGYR        IAV+ NLPSVQLSALENMHYSHMI
Sbjct: 420  LAKINIGDVLDSDGNWAGALDAFEEGYRHFLLYYRGIAVQENLPSVQLSALENMHYSHMI 479

Query: 473  RFDNIEEARRLQHEIDKLKESKSEDLEAYDVARDCCSETDTEGNDHLPDVRSSACFPAEM 532
            RFDN+EEARRLQ+ IDKLK+S +E  E  ++A DCCSETDTE +D L + RS      + 
Sbjct: 480  RFDNLEEARRLQYLIDKLKQSGNEKHEGRNIAEDCCSETDTERDDCLSNSRSDPSCSVKK 539

Query: 533  SKSDSGRSKTLAGLEEVEDDEPLISFLRSSERLPKLKRAYVEKQNIPTEPRELTPKTLSK 592
             KS S R        E +DD PLIS L+S+++LPK   A+V++      P   + K+ S 
Sbjct: 540  GKSKSDRG-------EFKDDVPLISLLQSNKKLPKWNIAHVDE----VLPTGASHKSSST 588

Query: 593  STNSQQTGGGRKRIRVVLSDDEGDIDNEEGLK----GRLQKCPVEGVATFDAINSKSGSA 648
            ST++QQT G RKR+RVVLSDDEG++ +E        GRL KCPVE V  F  +       
Sbjct: 589  STSNQQTVG-RKRVRVVLSDDEGEMQDEVACSNFECGRLHKCPVEDVTIFLILVV----- 642

Query: 649  SPAHKFQDVPAADFKCTNSSENPINVEESTCSHKFTSSNPTNQYGNAIRCTGKVFIAS-- 706
                 +QDV A   KC  SS  P+ +EEST S+K  + N T Q+G +I    ++FI+S  
Sbjct: 643  -----WQDVSAIPSKCAISSSTPMILEESTSSYKLRTPNVTAQFGKSIV---RIFISSKF 694

Query: 707  ---------DVNDD--------------------QCVTFRIDDDLIHLEVHSCICDDKLD 737
                     +V+++                    Q + F+I++DLI +E   C+ DD L 
Sbjct: 695  SLSGFKYDTNVSENLLQKHSAADLKLHTSEGAYGQYIAFKIENDLIQIEAAPCMVDDMLS 754

Query: 738  IESLKVELACLYYLQLPKEKISKGLLPIIQHMKYGGRSLESFDA---FKDQLGKDIIEVS 794
            IESLKVE+ACLYYLQLP +K S+GLLPIIQHM+ GG++LESF+A   FKD LG   +EV 
Sbjct: 755  IESLKVEVACLYYLQLPVDKRSRGLLPIIQHMRCGGKALESFEAIGTFKDTLGNGWVEVF 814

Query: 795  IDGWVQKRLMKLYIECCKELSEAPNMKLLKKLYISEV-EDEVIVSECELQDISVTPLLNA 853
            +DGWVQKRL+KLY++CCKELSE PN+KLLKKLY  EV EDEV+VSEC+LQDIS+ PLLNA
Sbjct: 815  VDGWVQKRLIKLYVDCCKELSETPNIKLLKKLYNLEVSEDEVMVSECDLQDISIMPLLNA 874

Query: 854  LHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECP 913
            LH HKT+A+LDLSHN+LGNGTMEKLQQ FISS Q Y  L LDLHCNRFGPTTLFQICECP
Sbjct: 875  LHVHKTIAMLDLSHNMLGNGTMEKLQQVFISSGQKYGGLALDLHCNRFGPTTLFQICECP 934

Query: 914  VLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAES 973
            VLF RL VLN+SGNRLTDACGSYLSTIL+ CK LY LNIE CSITSRT+QKVADAL ++S
Sbjct: 935  VLFARLEVLNISGNRLTDACGSYLSTILEKCKALYYLNIERCSITSRTVQKVADALDSQS 994

Query: 974  TLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTH 1033
             LAQLC+G+N+P++GN+I NL+ KL TL+ FSELNLNGLKLSK VVD LCQL K+SCL+ 
Sbjct: 995  VLAQLCLGHNNPISGNSIMNLMGKLSTLERFSELNLNGLKLSKTVVDSLCQLVKSSCLSG 1054

Query: 1034 LMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNL 1093
            LMLG +++G+DG+LQL +SLFS AQE VKLDLSYCGL S  I    A V +V GILE+NL
Sbjct: 1055 LMLGGSSIGTDGALQLTKSLFSGAQELVKLDLSYCGLTSEYITNLNAEVPMVGGILEINL 1114

Query: 1094 GGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADN 1153
            GGNP+M++G +ALASLLMNP CCLKVLVL+ CQLGLAGVLQ+I+ALSEND+LEELN+A N
Sbjct: 1115 GGNPVMQKGGSALASLLMNPHCCLKVLVLNNCQLGLAGVLQIIQALSENDSLEELNVAGN 1174

Query: 1154 A--SKELTLQQNLSSVNSENLQPAL------KTSDCVSKEVDTDQHGLFAMNTDCNDLEV 1205
            A   +  T Q NL ++ S    P +          CV KEV   Q G   MNTD N LEV
Sbjct: 1175 ADLDRHCTSQNNLKALESSETFPQILNISVSSPKVCVLKEVAAAQEGSCIMNTDYNQLEV 1234

Query: 1206 ADSEDDKIRVESAASGFDNSCTSSCQKNSSF-ECQFVQELSSAIGMAKPLQLLDLSNNGF 1264
            ADSEDD I  E AAS +D+SCT+SC++   F E +F+Q LS+AIGMAK LQLLDLSNNGF
Sbjct: 1235 ADSEDDPITAEPAAS-YDDSCTNSCKRMLQFSESEFIQGLSTAIGMAKKLQLLDLSNNGF 1293

Query: 1265 STQAVKTLYCAWSSRSGAGPAWKHIKEQIIHFSVEGNKCCRVKPCCRKN 1313
            STQ  +T+Y AWS  S +G A +HIKEQ +H  V G KCC VKPCC+++
Sbjct: 1294 STQDTETIYTAWSLGSRSGLAQRHIKEQTVHLLVRGQKCCGVKPCCKRD 1342

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552346|ref|XP_002517217.1| brushy protein, putative [Ricinus communis] gi|223543588|gb|EEF45117.1| brushy protein, putative [Ricinus communis]

 Score = 1659 bits (4295), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 869/1350 (64%), Positives = 1041/1350 (77%), Gaps = 60/1350 (4%)

Query: 1    MGRDEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVK 60
            MG+D+ Q+  AK+AYRSAKE GNRQEEARWANVIGDILKNRGEYV ++KW RIDY +S+K
Sbjct: 1    MGKDDRQLIAAKQAYRSAKEVGNRQEEARWANVIGDILKNRGEYVVSIKWLRIDYQISIK 60

Query: 61   YLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYY 120
            YLPEKHLLPTCQSLGEVYLRL   + AL+YQ KKHLELAKDASD++EQQRA TQLGRTY+
Sbjct: 61   YLPEKHLLPTCQSLGEVYLRLHDHEQALLYQ-KKHLELAKDASDIIEQQRASTQLGRTYH 119

Query: 121  EMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELD 180
            E+FL+S+DDH ++RNAKKYFKSAMKLAQ LKENP ++ SSFLKEYIDAHNNIGML+M+LD
Sbjct: 120  EIFLKSEDDHSAVRNAKKYFKSAMKLAQNLKENPPSASSSFLKEYIDAHNNIGMLEMDLD 179

Query: 181  NLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK 240
            NL EA++ L +GL+IC EEEVSEDDDGRSRLHHNLGNVY+E R W K+R+HIE+DIIICK
Sbjct: 180  NLGEAEEVLTKGLQICEEEEVSEDDDGRSRLHHNLGNVYIERREWSKARDHIEKDIIICK 239

Query: 241  KIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVK 300
            +I HCQGEAKGYINLGELHYRVQKY+EAI CY +AL+LA+SMEDED LA QI+QNIETVK
Sbjct: 240  RIGHCQGEAKGYINLGELHYRVQKYEEAIRCYHRALDLAKSMEDEDVLAKQINQNIETVK 299

Query: 301  KAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHC 360
            +AI+V+DELKKEEQ+LKKL R+ + A   S E+K   +Q+  LDRLIEKSSMIFAW +HC
Sbjct: 300  EAIKVLDELKKEEQHLKKLMRSTVNATDQSHEKKLFRKQHKLLDRLIEKSSMIFAWEEHC 359

Query: 361  EYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQA 420
            +YAK KKRIA +L DK KL DSFL++GESY K R F+KAIKW TKSWEMY  IGNLEGQA
Sbjct: 360  KYAKWKKRIAKQLYDKEKLGDSFLILGESYHKRRSFDKAIKWLTKSWEMYTLIGNLEGQA 419

Query: 421  LAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEA 480
            LAK++MG+VLD N DW GAL AF+E YRIAVEANLPSVQLSALENMHYSHMIRFDN+EEA
Sbjct: 420  LAKISMGDVLDCNDDWVGALKAFEESYRIAVEANLPSVQLSALENMHYSHMIRFDNVEEA 479

Query: 481  RRLQHEIDKLKESKSEDLEAYDVARDCCSETDTEGNDHLPDVRSSACFPAEMSKSDSGRS 540
            RRLQ+E+  LK+SK  +LE  ++ARDCCSETDT+ +D   D RS+     + + S   +S
Sbjct: 480  RRLQNEMSNLKQSKRRELETQNLARDCCSETDTDEDDDFSDNRSNPSHSPKNNSSGCTKS 539

Query: 541  KTLAGLEEVEDDEPLISFLRSSERLPKLKRAYVEKQNIPTEPRELTPKTLSKSTNSQQTG 600
            K LAG+EE+ DD PLIS L+ S++  + K A +E  N   +  E++PK LSK++N QQT 
Sbjct: 540  KNLAGVEELNDDLPLISLLQPSKQASRKKTACIENCNTCDKLAEVSPKCLSKTSN-QQTV 598

Query: 601  GGRKRIRVVLSDDEGDIDNEEGLKGRLQKCPVEGVATFDAINSKSGSASPAHKFQDVPAA 660
             GRKR+RVV+SDDEG+I NEE   GR  +  V+ VAT D   +             +P  
Sbjct: 599  VGRKRVRVVISDDEGEIQNEENFGGRFHEHTVDNVATSDGCGA-------------IP-- 643

Query: 661  DFKCTNSSENPINVEESTCSHKFTSSNPTNQYGNAIR--CTGKVFIASDVNDD------- 711
              KC  SS NP+N+EES+CS+K  S     Q G   R   T +V  AS  N D       
Sbjct: 644  --KCATSSSNPVNIEESSCSYK--SPKVATQTGKVFRPLSTDEVAFASSDNVDISASLMH 699

Query: 712  --QCVTFRIDDDLIHLEVHSCICDDKLDIESLKVELACLYYLQLPKEKISKGLLPIIQHM 769
              +    +IDD ++ +E       D L IES+KVELACLYYLQLP E  SKGLLPIIQHM
Sbjct: 700  RHRAACLKIDDAMLRIEGGPSFAADDLSIESIKVELACLYYLQLPMETRSKGLLPIIQHM 759

Query: 770  KYGGRSLESFDAF---KDQLGKDIIEVSIDGWVQKRLMKLYIECCKELSEAPNMKLLKKL 826
            K  G+ LES +AF   +D LG  +I+VSI+GWVQKRLMKLYI+ C+ELSE PNMKLLK+L
Sbjct: 760  KCAGKVLESLEAFETLEDHLGSVLIDVSINGWVQKRLMKLYIDFCEELSEPPNMKLLKEL 819

Query: 827  YISEVEDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSC 886
            YISEVEDE++ S CELQDIS+TPLLNALH HKTVA++DLSHN+LGNGTMEKLQQ  ++S 
Sbjct: 820  YISEVEDEIVASGCELQDISITPLLNALHAHKTVAMIDLSHNILGNGTMEKLQQ-LLTSG 878

Query: 887  QNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKV 946
            Q Y  LTLDLHCNRFGPT LFQICECPVLFTRL VLN+SGNRLTDACGSYLSTIL+ CK 
Sbjct: 879  QKYGGLTLDLHCNRFGPTALFQICECPVLFTRLEVLNISGNRLTDACGSYLSTILEKCKA 938

Query: 947  LYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSE 1006
            LYSLNIE CSITSRTIQKVADAL + S L+QL IG+N+ ++GNAI NLL KL  LKSF+E
Sbjct: 939  LYSLNIERCSITSRTIQKVADALTSGSVLSQLSIGHNNQISGNAIVNLLTKLAALKSFAE 998

Query: 1007 LNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLS 1066
            LNL+G+K+++PV D LCQLAK SCL+ +MLG T +G+DG++Q+ ESLFS +QE VKLDLS
Sbjct: 999  LNLSGIKINRPVTDNLCQLAKISCLSRVMLGSTGIGTDGAVQVTESLFSGSQEYVKLDLS 1058

Query: 1067 YCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQ 1126
            YCGL +   H+     +LV GILELNL GNPIM+EG NA+ SLL+NP+CCLKVLVL+KCQ
Sbjct: 1059 YCGLTAAYAHQLNIEDTLVCGILELNLEGNPIMQEGVNAITSLLVNPRCCLKVLVLNKCQ 1118

Query: 1127 LGLAGVLQLIKALSENDTLEELNLADNAS---KELTLQQNLSSVNSENLQPALKTSD--- 1180
            LGL GVLQ+IK LSEN  LEEL++ADN+S   K +    + +  +++ LQP   TS+   
Sbjct: 1119 LGLTGVLQVIKTLSENHHLEELHVADNSSQDEKHMMRYDSTTRCSADLLQPNFSTSESSL 1178

Query: 1181 -----------------CVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFD 1223
                             C  ++ D +   L A+NTDCN LEVADSED++IRVE A   FD
Sbjct: 1179 KVCGPKKADTENEALKVCAPEKADINHEALCAVNTDCNQLEVADSEDNEIRVE-AGPEFD 1237

Query: 1224 NSCTSSCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFSTQAVKTLYCAWSSRSGAG 1283
            +SCTSS QKNSS ECQF+QELS+AI MAK L+LLDLSNNGFS    +TL  AWSSR    
Sbjct: 1238 DSCTSSSQKNSSLECQFIQELSAAISMAKQLKLLDLSNNGFSNPVAETLSNAWSSRFTTD 1297

Query: 1284 PAWKHIKEQIIHFSVEGNKCCRVKPCCRKN 1313
             +W+HIK+QIIHFS+    CCR KPCCRK+
Sbjct: 1298 VSWRHIKDQIIHFSMSDEMCCRRKPCCRKD 1327

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528540|ref|XP_003532859.1| PREDICTED: protein TONSOKU-like [Glycine max]

 Score = 1557 bits (4031), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 815/1341 (60%), Positives = 1000/1341 (74%), Gaps = 64/1341 (4%)

Query: 8    MSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHL 67
            +  AK AYR+AK EGN +EEARWANVIGDILKNRGEYV+ALKW RIDY++S+K+LPEKHL
Sbjct: 5    LKSAKAAYRNAKAEGNHREEARWANVIGDILKNRGEYVQALKWLRIDYEISLKHLPEKHL 64

Query: 68   LPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSD 127
            LPTCQSLGE+YLRLEHF DALIYQ KKHL+LA+DA D+VEQQRA TQLGRTY+E+F RS+
Sbjct: 65   LPTCQSLGEMYLRLEHFSDALIYQ-KKHLDLARDAGDVVEQQRASTQLGRTYHELFSRSE 123

Query: 128  DDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKK 187
             DH SIRNAKKYFKSAM LA  L+ENP  S+SSFLKEYIDAHNNIGML+M+LDNL EA+K
Sbjct: 124  HDHNSIRNAKKYFKSAMDLAVKLQENPPNSKSSFLKEYIDAHNNIGMLEMDLDNLHEARK 183

Query: 188  FLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQG 247
             L RGLEICN+EEV+E DDGRSRLHHNLGNVYMELR WDK+R+HI  DI+IC +I H QG
Sbjct: 184  ILTRGLEICNDEEVAEFDDGRSRLHHNLGNVYMELRDWDKARKHIRTDIVICNRIGHVQG 243

Query: 248  EAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMD 307
            EAKGYINLGE++YR QKY++A   Y+KAL LA+S+EDEDAL  QI+QNIETV++A++VM 
Sbjct: 244  EAKGYINLGEVNYRTQKYEDASAYYEKALGLAKSLEDEDALVRQIEQNIETVREAVKVMA 303

Query: 308  ELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKK 367
            ++KKEEQ+LKKL R++  A+GT  ERK+LLQQNA L+RL+EK+ MI AW KHCE+AK KK
Sbjct: 304  DIKKEEQSLKKLKRDIATARGTPNERKFLLQQNAVLERLVEKARMISAWEKHCEFAKEKK 363

Query: 368  RIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMG 427
            +IASELCD+ +L+DS+L + ESY KLRKFNKAIKWY KSWEMYK+IGNLEGQA+ K+N+G
Sbjct: 364  KIASELCDRQRLADSYLDVAESYHKLRKFNKAIKWYKKSWEMYKNIGNLEGQAMVKINIG 423

Query: 428  NVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEARRLQHEI 487
            NV DS   W  ALDAFQE Y IAVEA+LP VQL+ALENMHYS+MIRFD+ +E RRL   I
Sbjct: 424  NVYDSTESWRKALDAFQESYSIAVEADLPDVQLAALENMHYSNMIRFDDEDETRRLNLLI 483

Query: 488  DKLKESKSEDLEAYDVARDCCSETDTEGNDHLPDVRS-SACFPAEMSKSDSGRSKTLAGL 546
            DKLK+ + ++ EA  +  D CSETDTE ++ L +  S   CFP  +S     RSKTL   
Sbjct: 484  DKLKKLEEKEAEAKSMPEDFCSETDTEADECLSNSGSDDFCFPKTIS-----RSKTLTTG 538

Query: 547  EEVEDDEPLISFLRSSERLPKLKRAYVEKQNIPTEPRELTPKTLSKSTNSQQTGGGRKRI 606
            EE+++D PL+S  +S +   K K  + E     T+  E +P +L   T+  QT  GRKR+
Sbjct: 539  EELKEDAPLMSLYQSLKGSSKKKAGHKESLANSTKQDEHSPSSLKNQTSDHQTVVGRKRV 598

Query: 607  RVVLSDDEGDIDNEEGLKGRLQKCPVEGVATFDAINSKSGSASPAHKFQDVPAADFKCTN 666
            RV+LSDD  D D  E    +   CPVE + T+DAI SK   ASP  KFQ +        N
Sbjct: 599  RVILSDD--DDDEVECSSRKDHNCPVEDLPTYDAIKSK---ASPC-KFQVIS------EN 646

Query: 667  SSENPINVEESTCSHKFTSSNPTNQYGNAIRCTGKVFIA-----------SDV----ND- 710
             S+  INVEES+ S K  S +   + G   R      +A           +DV    ND 
Sbjct: 647  GSKTAINVEESSSSFKCWSPHRATKSGRHSRSFSNDIVAEPDFPGGSKCDTDVSGKQNDI 706

Query: 711  ------------DQCVTFRIDDDLIHLEVHSCICDDKLDIESLKVELACLYYLQLPKEKI 758
                         Q VT RI +DLI +E   C   D+L+I+SLK  +ACLYYLQ P EK 
Sbjct: 707  TQPMLHHSQNDLQQYVTCRIGNDLIRVEASLCTTGDQLNIDSLKAVVACLYYLQFPTEKR 766

Query: 759  SKGLLPIIQHMKYGGRSLESFDA---FKDQLGKDIIEVSIDGWVQKRLMKLYIECCKELS 815
            S+GLLPII+H+K  GR LES +     K+ LG D++E S+DGW+ K L+K+Y++ CKELS
Sbjct: 767  SEGLLPIIEHIKCAGRDLESLETVEHLKEVLGNDMVEASVDGWIHKGLIKMYVDHCKELS 826

Query: 816  EAPNMKLLKKLYISEV-EDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGT 874
            E PN+K+LKKLY  EV +DE++VS+C+LQD+S+TPL+NALH+ K+ A+LDLSHNLLGNGT
Sbjct: 827  EVPNIKVLKKLYNLEVSDDEIVVSDCDLQDLSITPLINALHSQKSFAMLDLSHNLLGNGT 886

Query: 875  MEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACG 934
            +EKLQ+ F +S Q+Y  LTLDLHCNRFGPT+LFQICEC +LF RL VLN+SGNRLTDACG
Sbjct: 887  IEKLQKVFTASGQSYGGLTLDLHCNRFGPTSLFQICECSLLFDRLEVLNISGNRLTDACG 946

Query: 935  SYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNL 994
            SYLSTILKNC  L SLNIENC +TSRTIQKVADAL + S LA LCIGYNSPV+GNAI NL
Sbjct: 947  SYLSTILKNCTALCSLNIENCCVTSRTIQKVADALDSTSVLAHLCIGYNSPVSGNAIVNL 1006

Query: 995  LVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLF 1054
            + KL TLK FSELN++GLKL KPVVD LC+LA T  L+ L+LG T +G++G+++L ESL 
Sbjct: 1007 VSKLSTLKRFSELNMSGLKLGKPVVDTLCKLAGTLNLSGLILGGTGVGTEGAIKLAESLL 1066

Query: 1055 SRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQ 1114
               +E VKLDLSYCGL    +     SV+    ILELNL GNPIM EG+N L SLL+NPQ
Sbjct: 1067 QGTEELVKLDLSYCGLTFNFV--LNTSVNFFCSILELNLEGNPIMPEGSNTLFSLLVNPQ 1124

Query: 1115 CCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNA-SKELT-LQQNLSSVN-SEN 1171
            CCLKVLVL KCQLGLAG+L +I+AL+EN  LEELN+A+N+  KE++ LQ +LS  + S+N
Sbjct: 1125 CCLKVLVLKKCQLGLAGILHIIEALAENSCLEELNVANNSIPKEVSALQYDLSVKSCSQN 1184

Query: 1172 LQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFDNSCTSSCQ 1231
             +  L T      +VD +Q  L ++N+  + LEVADSED  + VE+AASGFD+SC SSCQ
Sbjct: 1185 QEQKLDT-----MKVDDNQEVLGSLNSADHLLEVADSED--VPVETAASGFDDSCASSCQ 1237

Query: 1232 KNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFSTQAVKTLYCAWSSRSGAGPAWKHIKE 1291
            +NSS EC F Q+ S AIG AK LQLLDLSNNGFS QA +  Y +W++      +  HI E
Sbjct: 1238 RNSSPECHFTQQFSIAIGKAKNLQLLDLSNNGFSAQAAEAFYGSWATLRPLS-SQNHITE 1296

Query: 1292 QIIHFSVEGNKCCRVKPCCRK 1312
            QIIHFS   NKCCRVKPCC+K
Sbjct: 1297 QIIHFSTRENKCCRVKPCCKK 1317

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461883|ref|XP_004148671.1| PREDICTED: protein TONSOKU-like [Cucumis sativus]

 Score = 1511 bits (3911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 825/1356 (60%), Positives = 1009/1356 (74%), Gaps = 57/1356 (4%)

Query: 1    MGRDEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVK 60
            M RD +Q   AKR+YR+AK EGNR EEA+WANVIG+ILKNRGEYV+ALKWFRIDYDVSVK
Sbjct: 1    MTRDGVQFDAAKRSYRNAKAEGNRHEEAKWANVIGNILKNRGEYVKALKWFRIDYDVSVK 60

Query: 61   YLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYY 120
            YLP+KH+L TCQSLGEVYLRLEHFKDALIYQ KKHLELAK+A+DLVEQQRA TQLGRTY+
Sbjct: 61   YLPQKHMLATCQSLGEVYLRLEHFKDALIYQ-KKHLELAKNANDLVEQQRANTQLGRTYH 119

Query: 121  EMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELD 180
            E+FL+SDDDH S+RNAKKYF++AM+LA+ LK++P     SFLKEY+DAHNN+GML+M+LD
Sbjct: 120  ELFLKSDDDHLSVRNAKKYFRAAMELAKFLKDHPPKIGCSFLKEYVDAHNNLGMLEMDLD 179

Query: 181  NLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK 240
            NLEEAK  L  GLEIC EEEV +DDDGRSRLHHNLG+VYMELRMWD++++H+E+DIIICK
Sbjct: 180  NLEEAKNILTEGLEICEEEEVDQDDDGRSRLHHNLGSVYMELRMWDQAKKHVEKDIIICK 239

Query: 241  KIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVK 300
             I HCQGEAKGYINLGELHYRVQKYDEAI CY+KAL+LA+SMEDEDALA QIDQNI TVK
Sbjct: 240  NIGHCQGEAKGYINLGELHYRVQKYDEAIHCYRKALHLAKSMEDEDALARQIDQNINTVK 299

Query: 301  KAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHC 360
            +A++VM EL+KEEQNLKKL R M+ A+GT +ERK LLQQNASLDRLIEKSS IFAW++H 
Sbjct: 300  EAMQVMVELRKEEQNLKKLMREMVTARGTPRERKCLLQQNASLDRLIEKSSTIFAWMQHL 359

Query: 361  EYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQA 420
            E+AKRKKR+ASELCDK KLSDS+L IGESY KLRKF K+IKWY KSWE+YKSIGNLEGQA
Sbjct: 360  EFAKRKKRVASELCDKEKLSDSYLAIGESYHKLRKFTKSIKWYVKSWEVYKSIGNLEGQA 419

Query: 421  LAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEA 480
            LAK+N+G+V D +G W  ALDAF+E YRIAVEA LPSVQLSALENMHYSHMIRFDN EEA
Sbjct: 420  LAKINIGDVYDCDGKWTEALDAFEESYRIAVEAKLPSVQLSALENMHYSHMIRFDNAEEA 479

Query: 481  RRLQHEIDKLKESKSEDLEAYDVARDCCSETDTEGNDHLPDVRSSACFPAEMS---KSDS 537
            RRLQ +ID+LKE      +    A DCCSETDTE ND L D  S  C  +E     KS+ 
Sbjct: 480  RRLQCQIDQLKEKTKSGNDTR--AEDCCSETDTEANDALSDSSSDECSLSETRKSCKSNF 537

Query: 538  GRSKTLAGLEEVEDDEPLISFLRSSERLPKLKRAYVEKQNIPTEPRELTPKTLSKSTNSQ 597
              SK+LA LEE  D    IS  +  ER P +K   +EK N  + P E +PK+LSKS  SQ
Sbjct: 538  NSSKSLADLEEPNDAVTFISSFKRHERSPTIKSFDMEKCNASSNPSEFSPKSLSKSAGSQ 597

Query: 598  QTGGGRKRIRVVLSDDEGDIDNEEGL-KGRLQKCPVEGVATFDAINSKSGSASPAHKFQD 656
            QT  GRKR RVVLSDD+ D D      K R   C  E  AT D   +K  S + A + ++
Sbjct: 598  QTTIGRKRTRVVLSDDDEDEDEMMDFSKTRPHLCRGENSATSDDNKNKQYSGNLAAEVKE 657

Query: 657  VPAADFKCTNSSENPINVEESTCSHK-------------FTSSNPTNQYGNAIRCTGKVF 703
                  K  ++S +  ++EEST S+K             F + N    + +    +G  F
Sbjct: 658  GSTTTSK--HASRSCEDIEESTGSYKYKSRMIRTQNDKTFGTPNADEIFPSDSAASGSKF 715

Query: 704  IASDVNDD----------------QCVTFRIDDDLIHLEVHSCICDDKLDIESLKVELAC 747
               D++++                +CVTF+ID++LI + V   +  + L IES K ELAC
Sbjct: 716  -EVDISENLLHRYKATKSKPSEQGECVTFKIDNELIQVGV--ALFSNMLSIESAKEELAC 772

Query: 748  LYYLQLPKEKISKGLLPIIQHMKYGGRSLESFDAFK--DQLGKDIIEVSIDGWVQKRLMK 805
            +YYLQLP EK S+GLLP+IQH+ + GR+LE+ +  K  D     + E  I+GWV K L+K
Sbjct: 773  MYYLQLPLEKRSEGLLPVIQHISHDGRTLETLEFSKTFDHGRNLLFEAVINGWVSKPLIK 832

Query: 806  LYIECCKELSEAPNMKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKTVALLDL 865
            LYI+ CKELSE PNMKL+KKLY  EV DE+ VS+C+LQD+S++PLLNALHT KT A+LDL
Sbjct: 833  LYIDYCKELSETPNMKLVKKLYNLEVYDEIAVSDCDLQDLSISPLLNALHTQKTFAILDL 892

Query: 866  SHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLS 925
            SHN LGNGTMEK+QQ F  S Q + DLTLDLHCNRFGPT L+QICECP+LF RL VLN+S
Sbjct: 893  SHNFLGNGTMEKIQQVFKQSSQTH-DLTLDLHCNRFGPTALYQICECPILFARLEVLNIS 951

Query: 926  GNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSP 985
            GNRLTDACGSYLSTILKNCK L+ LNIE CSITSRTIQKVADAL   ++L +L IGYN+ 
Sbjct: 952  GNRLTDACGSYLSTILKNCKGLWCLNIERCSITSRTIQKVADALEVGASLEKLYIGYNNS 1011

Query: 986  VTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDG 1045
            ++GNA+++L VKL  L  F+ L L+GLKLSKPV++ L QL K+  L+ LMLG T +G D 
Sbjct: 1012 ISGNALSSLFVKLTVLNRFNSLGLSGLKLSKPVMEGLLQLVKSLGLSGLMLGGTGIGDDA 1071

Query: 1046 SLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANA 1105
            +L + ES FS ++E VKLDL+YCGL S  + KF   +S++  + ELNL GN IM+EG +A
Sbjct: 1072 ALGITES-FSGSEELVKLDLAYCGLTSKYLVKFGGCISIIQRVHELNLSGNAIMQEGCHA 1130

Query: 1106 LASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNAS-KELTLQQN- 1163
            ++SL+ NP C +K L+L+KCQLGL GV Q+I+A++ N  LEELNLADN    +  LQ N 
Sbjct: 1131 VSSLIANPLCGIKFLLLNKCQLGLTGVAQIIQAIAGNHCLEELNLADNIDLDKHPLQCNI 1190

Query: 1164 LSSVNSENLQPALKTSD-----CVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESA 1218
            +   N E +QP    S      C SKE D  Q  L   NT+ + LEVADSE + IR E+ 
Sbjct: 1191 IDKENKELVQPCHDISKPHGLTCSSKEFDLAQQNLEETNTEYDQLEVADSE-EPIR-EAP 1248

Query: 1219 ASGFDNSCTSSCQ-KNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFSTQAVKTLYCAWS 1277
            ASG D+SC SSC+ K++SF+CQF+  LS+AIGMAK L+LLDLSNNGFS+Q  +T++ AWS
Sbjct: 1249 ASGIDDSCASSCERKSTSFDCQFILSLSTAIGMAKTLRLLDLSNNGFSSQETETIFGAWS 1308

Query: 1278 SRSGAGPAWKHIKEQIIHFSVEGNKCCRVKPCCRKN 1313
            + S    A +HIK+ I+H  V+G KCC V+PCC+K+
Sbjct: 1309 T-SRTDLAQRHIKDNIVHLYVKGTKCC-VRPCCKKD 1342

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516822|ref|XP_004165445.1| PREDICTED: LOW QUALITY PROTEIN: protein TONSOKU-like [Cucumis sativus]

 Score = 1503 bits (3892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 822/1356 (60%), Positives = 1007/1356 (74%), Gaps = 57/1356 (4%)

Query: 1    MGRDEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVK 60
            M RD +Q   AKR+YR+AK EGNR EEA+WANVIG+ILKNRGEYV+ALKWFRIDYDVSVK
Sbjct: 1    MTRDGVQFDAAKRSYRNAKAEGNRHEEAKWANVIGNILKNRGEYVKALKWFRIDYDVSVK 60

Query: 61   YLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYY 120
            YLP+KH+L TCQSLGEVYLRLEHFKDALIYQ KKHLELAK+A+DLVEQQRA TQLGRTY+
Sbjct: 61   YLPQKHMLATCQSLGEVYLRLEHFKDALIYQ-KKHLELAKNANDLVEQQRANTQLGRTYH 119

Query: 121  EMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELD 180
            E+FL+SDDDH S+RNAKKYF++AM+LA+ LK++P     SFLKEY+DAHNN+GML+M+LD
Sbjct: 120  ELFLKSDDDHLSVRNAKKYFRAAMELAKFLKDHPPKIGCSFLKEYVDAHNNLGMLEMDLD 179

Query: 181  NLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK 240
            NLEEAK  L  GLEIC EEEV +DDDGRSRLHHNLG+VYMELRMWD++++H+E+DIIICK
Sbjct: 180  NLEEAKNILTEGLEICEEEEVDQDDDGRSRLHHNLGSVYMELRMWDQAKKHVEKDIIICK 239

Query: 241  KIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVK 300
             I HCQGEAKGYINLGELHYRVQKYDEAI CY+KAL+LA+SMEDEDALA QIDQNI TVK
Sbjct: 240  NIGHCQGEAKGYINLGELHYRVQKYDEAIHCYRKALHLAKSMEDEDALARQIDQNINTVK 299

Query: 301  KAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHC 360
            +A++VM EL+KEEQNLKKL R M+ A+GT +ERK LLQQNASLDRLIEKSS IFAW++H 
Sbjct: 300  EAMQVMVELRKEEQNLKKLMREMVTARGTPRERKCLLQQNASLDRLIEKSSTIFAWMQHL 359

Query: 361  EYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQA 420
            E+AK +KR+ASELCDK KLSDS+L IGESY KLRKF K+IKWY KSWE+YKSIGNLEGQA
Sbjct: 360  EFAKXEKRVASELCDKEKLSDSYLAIGESYHKLRKFTKSIKWYVKSWEVYKSIGNLEGQA 419

Query: 421  LAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEA 480
            LAK+N+G+V D +G W  ALDAF+E YRIAVEA LPSVQLSALENMHYSHMIRFDN EEA
Sbjct: 420  LAKINIGDVYDCDGKWTEALDAFEESYRIAVEAKLPSVQLSALENMHYSHMIRFDNAEEA 479

Query: 481  RRLQHEIDKLKESKSEDLEAYDVARDCCSETDTEGNDHLPDVRSSACFPAEMS---KSDS 537
            RRLQ +ID+LKE      +    A DCCSETDTE ND L D  S  C  +E     KS+ 
Sbjct: 480  RRLQCQIDQLKEKTKSGNDTR--AEDCCSETDTEANDALSDSSSDECSLSETRKSCKSNF 537

Query: 538  GRSKTLAGLEEVEDDEPLISFLRSSERLPKLKRAYVEKQNIPTEPRELTPKTLSKSTNSQ 597
              SK+LA LEE  D    IS  +  ER P +K   +EK N  + P E +PK+LSKS  SQ
Sbjct: 538  NSSKSLADLEEPNDAVTFISSFKRHERSPTIKSFDMEKCNASSNPSEFSPKSLSKSAGSQ 597

Query: 598  QTGGGRKRIRVVLSDDEGDIDNEEGL-KGRLQKCPVEGVATFDAINSKSGSASPAHKFQD 656
            QT  GRKR RVVLSDD+ D D      K R   C  E  AT D   +K  S + A + ++
Sbjct: 598  QTTIGRKRTRVVLSDDDEDEDEMMDFSKTRPHLCRGENSATSDDNKNKQYSGNLAAEVKE 657

Query: 657  VPAADFKCTNSSENPINVEESTCSHK-------------FTSSNPTNQYGNAIRCTGKVF 703
                  K  ++S +  ++EEST S+K             F + N    + +    +G  F
Sbjct: 658  GSTTTSK--HASRSCEDIEESTGSYKYKSRMIRTQNDKTFGTPNADEIFPSDSAASGSKF 715

Query: 704  IASDVNDD----------------QCVTFRIDDDLIHLEVHSCICDDKLDIESLKVELAC 747
               D++++                +CVTF+ID++LI + V   +  + L IES K ELAC
Sbjct: 716  -EVDISENLLHRYKATKSKPSEQGECVTFKIDNELIQVGV--ALFSNMLSIESAKEELAC 772

Query: 748  LYYLQLPKEKISKGLLPIIQHMKYGGRSLESFDAFK--DQLGKDIIEVSIDGWVQKRLMK 805
            +YYLQLP EK S+GLLP+IQH+ + GR+LE+ +  K  D     + E  I+GWV K L+K
Sbjct: 773  MYYLQLPLEKRSEGLLPVIQHISHDGRTLETLEFSKTFDHGRNLLFEAVINGWVSKPLIK 832

Query: 806  LYIECCKELSEAPNMKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKTVALLDL 865
            LYI+ CKELSE PNMKL+KKLY  EV DE+ VS+C+LQD+S++PLLNALHT KT A+LDL
Sbjct: 833  LYIDYCKELSETPNMKLVKKLYNLEVYDEIAVSDCDLQDLSISPLLNALHTQKTFAILDL 892

Query: 866  SHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLS 925
            SHN LGNGTMEK+QQ F  S Q + DLTLDLHCNRFGPT L+QICECP+LF RL VLN+S
Sbjct: 893  SHNFLGNGTMEKIQQVFKQSSQTH-DLTLDLHCNRFGPTALYQICECPILFARLEVLNIS 951

Query: 926  GNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSP 985
            GNRLTDACGSYLSTI KNCK L+ LNIE CSITSRTIQKVADAL   ++L +L IGYN+ 
Sbjct: 952  GNRLTDACGSYLSTIXKNCKGLWCLNIERCSITSRTIQKVADALEVGASLEKLYIGYNNS 1011

Query: 986  VTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDG 1045
            ++GNA+++L VKL  L  F+ L L+GLKLSKPV++ L QL K+  L+ LMLG T +G D 
Sbjct: 1012 ISGNALSSLFVKLTVLNRFNSLGLSGLKLSKPVMEGLLQLVKSLGLSGLMLGGTGIGDDA 1071

Query: 1046 SLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANA 1105
            +L + ES FS ++E VKLDL+YCGL S  + KF   +S++  + ELNL GN IM+EG +A
Sbjct: 1072 ALGITES-FSGSEELVKLDLAYCGLTSKYLVKFGGCISIIQRVHELNLSGNAIMQEGCHA 1130

Query: 1106 LASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNAS-KELTLQQN- 1163
            ++SL+ NP C +K L+L+KCQLGL GV Q+I+A++ N  LEELNLADN    +  LQ N 
Sbjct: 1131 VSSLIANPLCGIKFLLLNKCQLGLTGVAQIIQAIAGNHCLEELNLADNIDLDKHPLQCNI 1190

Query: 1164 LSSVNSENLQPALKTSD-----CVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESA 1218
            +   N E +QP    S      C SKE D  Q  L   NT+ + LEVADSE + IR E+ 
Sbjct: 1191 IDKENKELVQPCHDISKPHGLTCSSKEFDLAQQNLEETNTEYDQLEVADSE-EPIR-EAP 1248

Query: 1219 ASGFDNSCTSSCQ-KNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFSTQAVKTLYCAWS 1277
            ASG D+SC SSC+ K++SF+CQF+  LS+AIGMAK L+LLDLSNNGFS+Q  +T++ AWS
Sbjct: 1249 ASGIDDSCASSCERKSTSFDCQFILSLSTAIGMAKTLRLLDLSNNGFSSQETETIFGAWS 1308

Query: 1278 SRSGAGPAWKHIKEQIIHFSVEGNKCCRVKPCCRKN 1313
            + S    A +HIK+ I+H  V+G KCC V+PCC+K+
Sbjct: 1309 T-SRTDLAQRHIKDNIVHLYVKGTKCC-VRPCCKKD 1342

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511155|ref|XP_003524295.1| PREDICTED: protein TONSOKU-like [Glycine max]

 Score = 1498 bits (3878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 808/1341 (60%), Positives = 988/1341 (73%), Gaps = 81/1341 (6%)

Query: 8    MSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHL 67
            +  AK AYR+AK EGN +EEARWANVIGDILKNRGEYV+ALKW R DYDVS+K+LPEKHL
Sbjct: 5    LKSAKAAYRNAKAEGNHREEARWANVIGDILKNRGEYVQALKWLRTDYDVSLKHLPEKHL 64

Query: 68   LPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSD 127
            LPTCQSLGE+YLRLEHF DALIYQ KKHLELA+DA D+VEQQRA TQLGRTY+E+F RS+
Sbjct: 65   LPTCQSLGEMYLRLEHFSDALIYQ-KKHLELARDADDVVEQQRASTQLGRTYHELFSRSE 123

Query: 128  DDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKK 187
             DH SIRNAKKYFKSAM LA  LKENP  S+SSFLKEYIDAHNNIGML+M+LDNL EA+K
Sbjct: 124  HDHNSIRNAKKYFKSAMDLAVKLKENPPNSKSSFLKEYIDAHNNIGMLEMDLDNLHEARK 183

Query: 188  FLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQG 247
             L RGLEIC EEEV+E DDGRSRLHHNLGNVYMELR WDK+R+HI+ DI+IC +I H QG
Sbjct: 184  ILTRGLEICEEEEVAEFDDGRSRLHHNLGNVYMELRDWDKARKHIKTDIVICNRIGHVQG 243

Query: 248  EAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMD 307
            EAKGYINLGE+HYR QKY++A   Y KAL LA+S+EDEDAL  QI+QNI+ V++A++VM 
Sbjct: 244  EAKGYINLGEVHYRTQKYEDASAYYLKALGLAKSLEDEDALVRQIEQNIKIVREAVKVMA 303

Query: 308  ELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKK 367
            ++KK EQ+LKKL R++  A+GT  ERK+LLQQNA L+RL+EK+ MI AW KHCE+AK KK
Sbjct: 304  DIKKNEQSLKKLKRDIATARGTPNERKFLLQQNAVLERLVEKARMISAWEKHCEFAKEKK 363

Query: 368  RIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMG 427
            RIASELCD+ +L+DS+L + ESYQKLRKFNKAIKWY KSWEMYK+IGNLEGQA+ K+N+G
Sbjct: 364  RIASELCDRQRLADSYLDVAESYQKLRKFNKAIKWYKKSWEMYKNIGNLEGQAMVKINIG 423

Query: 428  NVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEARRLQHEI 487
            NV DS  +W  ALDAFQE Y IAVEA+LP VQLSALENMHYS+MIRFD+ +E RRL+  I
Sbjct: 424  NVYDSTENWRKALDAFQESYSIAVEADLPDVQLSALENMHYSNMIRFDDEDETRRLKLLI 483

Query: 488  DKLKESKSEDLEAYDVARDCCSETDTEGNDHLPDVRS-SACFPAEMSKSDSGRSKTLAGL 546
            DKLK+S+ ++ EA  +  D CSETDTE +D+L +  S   CFP   S     RSKTL   
Sbjct: 484  DKLKKSEEKEAEAKSMPEDFCSETDTEADDYLSNSGSDDLCFPKTTS-----RSKTLTTG 538

Query: 547  EEVEDDEPLISFLRSSERLPKLKRAYVEKQNIPTEPRELTPKTLSKSTNSQQTGGGRKRI 606
            EE+++D PL+S  +S +   K K  + E     T+  E +P +L   T+  QT   RKR+
Sbjct: 539  EEMKNDMPLMSVYQSIKGSSKKKAGHKESLTNSTKQDEQSPSSLKNQTSDHQTVVSRKRV 598

Query: 607  RVVLSDDEGDIDNEEGLKGRLQKCPVEGVATFDAINSKSGSASPAHKFQDVPAADFKCTN 666
            RV+LSDD+ D +  E    +   CPVE + T+DAI +K   ASP  K Q +     KCT 
Sbjct: 599  RVILSDDDDDDEEVECSSRKNHHCPVEDLPTYDAIKTK---ASPC-KIQFISENGSKCT- 653

Query: 667  SSENPINVEESTCSHKFTSSNPTNQYGNAIRCTGKVFIA-----------SDV----ND- 710
                 INVEES+CS+K +S +   + G   R      +A           +DV    ND 
Sbjct: 654  -----INVEESSCSYKCSSPHTATKTGRHSRSLSNDIVAEPDFRIGSKCGTDVSGKQNDI 708

Query: 711  ------------DQCVTFRIDDDLIHLEVHSCICDDKLDIESLKVELACLYYLQLPKEKI 758
                         Q +T RI +DLIH+E   C   D+L+I+SLK  +ACLYYLQ P EK 
Sbjct: 709  SQPMLHHSQNDLQQYITCRIGNDLIHVETTLCATGDQLNIDSLKAAVACLYYLQFPTEKR 768

Query: 759  SKGLLPIIQHMKYGGR---SLESFDAFKDQLGKDIIEVSIDGWVQKRLMKLYIECCKELS 815
            S+GLLPII+H+K  GR   SLE+ +  K+ LG  ++E S+DGW+ K L+K+Y++ CKELS
Sbjct: 769  SEGLLPIIEHIKCAGRDLKSLETVEHLKEVLGNSMVEASVDGWIHKCLIKMYVDGCKELS 828

Query: 816  EAPNMKLLKKLYISEV-EDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGT 874
            E PN+K+LKKLY  EV +DE+ VS+C+LQD+S+TPL+NALH+ K+ A+LDLSHNLLGNGT
Sbjct: 829  EVPNIKVLKKLYNLEVSDDEIAVSDCDLQDLSITPLINALHSQKSFAMLDLSHNLLGNGT 888

Query: 875  MEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACG 934
            +EKLQ+ F +S Q+Y  LTLDLHCNRFGPT LFQICEC +LF RL VLN+SGNRLTDACG
Sbjct: 889  IEKLQKVFTASGQSYGGLTLDLHCNRFGPTALFQICECSLLFARLEVLNISGNRLTDACG 948

Query: 935  SYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNL 994
            SYLSTILKNC  L SLNIENC +TSRTIQKVADAL + S LA LCIGYNSPV+GNAI NL
Sbjct: 949  SYLSTILKNCTALCSLNIENCCVTSRTIQKVADALDSRSVLAHLCIGYNSPVSGNAIINL 1008

Query: 995  LVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLF 1054
            L +L TLK FSELN++GLKL KPVVD LC+LA T  L+ L+LG T +G++G+ +L ESL 
Sbjct: 1009 LSRLSTLKRFSELNMSGLKLGKPVVDTLCKLAGTLTLSGLILGGTGIGTEGATKLAESLL 1068

Query: 1055 SRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQ 1114
               +E VKLDLSYCGL    +     SV+    ++ELNL GNPIM EG+NAL +LL+NPQ
Sbjct: 1069 KGTEEFVKLDLSYCGLTFNFV--LNTSVNFFCSVIELNLEGNPIMPEGSNALFALLVNPQ 1126

Query: 1115 CCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNA--SKELTLQQNLSSVN-SEN 1171
            CCLKVLVL KCQLGLAG+L +I+AL+EN  LEELNLADN+  ++  +LQ +LS  + S+N
Sbjct: 1127 CCLKVLVLKKCQLGLAGILHIIEALAENSCLEELNLADNSVPTEVSSLQYDLSVKSCSQN 1186

Query: 1172 LQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFDNSCTSSCQ 1231
             +  L T                        ++V D+ED  I VE+AASG D+SC SSCQ
Sbjct: 1187 QEQKLDT------------------------IKVDDNED--IPVEAAASGLDDSCVSSCQ 1220

Query: 1232 KNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFSTQAVKTLYCAWSSRSGAGPAWKHIKE 1291
            +NSS EC F Q+ S AIG AK LQLLDLSNNGFS Q  +  Y +W++      + KHI E
Sbjct: 1221 RNSSPECHFTQQFSIAIGKAKNLQLLDLSNNGFSAQPAEAFYGSWATLRPLS-SQKHITE 1279

Query: 1292 QIIHFSVEGNKCCRVKPCCRK 1312
            QIIHFS  GNKCCRVKPCC+K
Sbjct: 1280 QIIHFSTRGNKCCRVKPCCKK 1300

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|65736533|dbj|BAD98515.1| TONSOKU protein [Nicotiana tabacum]

 Score = 1378 bits (3566), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 772/1377 (56%), Positives = 969/1377 (70%), Gaps = 73/1377 (5%)

Query: 1    MGRDEMQ--MSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVS 58
            MG+++ Q  +  AKRAY+SAKEEGN  EEA+WANVIGDILKNRGEY+EAL+W RIDY++S
Sbjct: 1    MGKNDTQNQLIVAKRAYKSAKEEGNHSEEAKWANVIGDILKNRGEYIEALRWLRIDYEIS 60

Query: 59   VKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRT 118
            +KYLPEK LLP+CQSLGEVYLR++ +K AL +Q KKHLELAKD +DL+EQQRA TQLGRT
Sbjct: 61   LKYLPEKQLLPSCQSLGEVYLRIQDYKHALTFQ-KKHLELAKDENDLIEQQRASTQLGRT 119

Query: 119  YYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQME 178
            Y+E+FL+S+DDH S+RNA+KYFK A+ LA+TLK+N  +S+ SF+KEYIDA++NIGML+++
Sbjct: 120  YHEIFLKSEDDHDSVRNARKYFKWALALAKTLKKNLRSSKHSFVKEYIDAYDNIGMLEVD 179

Query: 179  LDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIII 238
            LDNLEEA+K L  GLEIC+EEEV EDDDGRSRLHHNLGNVY ELR W+K+REH E+DI+I
Sbjct: 180  LDNLEEAEKVLSEGLEICDEEEVGEDDDGRSRLHHNLGNVYTELRKWNKAREHFEKDILI 239

Query: 239  CKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIET 298
            C +I HCQGEAKGYINLGELHYRVQKYDEA+ CY+ AL LA+SMEDEDAL SQ +QNIE 
Sbjct: 240  CHRIGHCQGEAKGYINLGELHYRVQKYDEAMKCYEWALRLAKSMEDEDALISQANQNIEI 299

Query: 299  VKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLK 358
            VK+A +VMDE+KKEEQNLKKL R M IA+GT  ERK LLQQN SLD LIEKSS IFAWLK
Sbjct: 300  VKEACQVMDEIKKEEQNLKKLAREMEIARGTEGERKCLLQQNLSLDHLIEKSSAIFAWLK 359

Query: 359  HCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEG 418
            H  YA++KK+IASELCDK KLSDSFL IGESYQKLR+F+KA+KWY KS + Y++IGNLEG
Sbjct: 360  HHTYAEKKKQIASELCDKEKLSDSFLAIGESYQKLREFDKALKWYNKSLDTYRAIGNLEG 419

Query: 419  QALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIE 478
            QALAK+N+GNVLDSNG+W GAL AF+EGYRIA++A  PS+QLSALENMHYS MIRFDN  
Sbjct: 420  QALAKINIGNVLDSNGNWGGALAAFEEGYRIAIQAKKPSIQLSALENMHYSQMIRFDNAR 479

Query: 479  EARRLQHEIDKLKESKSEDLEAYDVARDCCSETDTEGNDHLPDVRSSACFPAEMSKSDSG 538
              R LQ  IDKLK+SK  DLEA  VA DCCSE++TE  D  P + S      + +K    
Sbjct: 480  RGRGLQSSIDKLKKSKVGDLEAQYVAEDCCSESETEVGDQSP-ITSYDSISPKTAKLGFK 538

Query: 539  RSKTLAGLEEVEDDEPLISFLRSSERLPKLKRAYVEKQNIPTEPRELTPKTLSKSTNSQQ 598
             SK+    +E+  D PLIS +R    L K K A+VE     TE    +  ++S+   SQ 
Sbjct: 539  ISKSHGSEDELNVDMPLISLVRPKRNLAKFKPAHVETTIASTELPNSSSPSMSRPAGSQA 598

Query: 599  TGGGRKRIRVVLSDDEGD--------------IDNEEGLKGRL--QKCPVEGVAT---FD 639
               GRKR+R+VLSDDEGD              ++ E G   R    KC VE VAT   F 
Sbjct: 599  V--GRKRVRLVLSDDEGDNEDVYSSSRIISTPLEGEMGHCSRRTSHKCSVENVATSDQFK 656

Query: 640  AINSKSGSASPAHKFQD---------VPAADFKCTNSSENPINVE-ESTCSHKFT----- 684
              N +  S+     F           VP +  K   + +     E  S   + FT     
Sbjct: 657  DTNYQVQSSWIEGCFTSWITMLLSVLVPLSTLKKVRALDKSRTPELGSRDDNDFTYSSTK 716

Query: 685  SSNPTNQYGNAIRCTGKVFIASDVNDD-------------QCVTFRIDDDLIHLEVHSCI 731
            +S P   +G    C  K+      ND+             Q + FRI ++L+H++  S  
Sbjct: 717  TSAPKFSFG---ACGRKLDADVSGNDNISDLTLHACGEHCQHILFRIGNNLVHVKWDSGN 773

Query: 732  CDDKLDIESLKVELACLYYLQLPKEKISKGLLPIIQHMKYGGRSLESFDAFK----DQLG 787
                L++E +KVE+ACLYYLQLP E+ SKGL+P+IQHM + GR +ES +A      +  G
Sbjct: 774  AGTLLNLEQMKVEVACLYYLQLPAEERSKGLVPVIQHMMHDGRLIESLEAVSILNDNMAG 833

Query: 788  KDIIEVSIDGWVQKRLMKLYIECCKELSEAPNMKLLKKLYISEV-EDEVIVSECELQDIS 846
            K  IEVSID WV K LMKLYI+CC+ELS+ P +K++K LY  EV EDE++VS+CELQDIS
Sbjct: 834  KACIEVSIDVWVPKHLMKLYIDCCEELSQPPILKVIKMLYNQEVSEDEIVVSDCELQDIS 893

Query: 847  VTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTL 906
            V PL+NAL+ HK+ A+LDLSHNLLGNGTMEKL++ F SS QNY  LTLDLHCNR G T L
Sbjct: 894  VAPLINALYVHKSFAVLDLSHNLLGNGTMEKLKRVFTSSGQNYGGLTLDLHCNRLGSTAL 953

Query: 907  FQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVA 966
            FQICEC VL+ RL VLN+SGNRLTDAC SYLS IL+NCK LYSLNIE CSITSRTIQKVA
Sbjct: 954  FQICECHVLYARLEVLNISGNRLTDACASYLSAILQNCKALYSLNIEQCSITSRTIQKVA 1013

Query: 967  DALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLA 1026
            D+L + S L  L +G+N P+  NA+ +LLV L  LK F EL+L G+KLSKPV++ LCQL 
Sbjct: 1014 DSLTSGSALTHLSLGHNHPIAANAVISLLVTLTNLKRFQELSLKGIKLSKPVIESLCQLV 1073

Query: 1027 KTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVH 1086
            K+S L+ L+LG T++G DG L+L++SL + +QE +KLD+S CGL   CI +  A +S+ +
Sbjct: 1074 KSSSLSGLLLGSTSIGPDGMLKLMQSLSTESQE-LKLDVSSCGLTPDCIVRLNAEISVFN 1132

Query: 1087 GILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLE 1146
             I+EL+LGGN + +EG  ALA+ L N +CCL+VL+L KCQLGL G+L ++K LSEN  LE
Sbjct: 1133 SIVELDLGGNQLKQEGGRALAAALSNSRCCLRVLLLQKCQLGLLGILWILKGLSENYYLE 1192

Query: 1147 ELNLADNASKE--LTLQQNLSSVN--SENLQPALKTSDCVSKEVDTD-----QHGLFAMN 1197
            ELNLA+NA +E    L  +  S+N  S   Q   K  D +S+    +     Q  L  +N
Sbjct: 1193 ELNLAENADREELHVLPHDPCSLNKCSNVFQTDAKLLDNLSEASAANAKEGCQEELCTIN 1252

Query: 1198 TDCNDLEVAD-SEDDKIRVESAASGFDNSCTSSCQKN-SSFECQFVQELSSAIGMAKPLQ 1255
            TD N LE +   ED+++ V++     + +C+ +  KN    E +F+QELS+AI MAK L 
Sbjct: 1253 TDDNLLEGSQIGEDEQVEVDAIERAMNQNCSGTSLKNHRDIESEFIQELSAAIQMAKHLL 1312

Query: 1256 LLDLSNNGFSTQAVKTLYCAWSSRSGAGPAWKHIKEQIIHFSVEGNKCCRVKPCCRK 1312
            LLDLSNNGF+ +  ++                HI++  IH SVEG KCC +KPCCR+
Sbjct: 1313 LLDLSNNGFTKELAESFMLRGHLVREVVHLRGHIEDNTIHLSVEGLKCCHLKPCCRR 1369

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|84782444|tpe|CAE30337.1| TPA: 3g18730 protein [Arabidopsis thaliana]

 Score = 1347 bits (3485), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 745/1351 (55%), Positives = 964/1351 (71%), Gaps = 78/1351 (5%)

Query: 1    MGRDEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVK 60
            MGR  + ++ AKRAYR A+E G+R+E+ARWAN +GDILKN GEYV+ALKWFRIDYD+SVK
Sbjct: 1    MGR--LDVAAAKRAYRKAEEVGDRREQARWANNVGDILKNHGEYVDALKWFRIDYDISVK 58

Query: 61   YLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYY 120
            YLP K LLPTCQSLGE+YLRLE+F++ALIYQ KKHL+LA++A+D VE+QRACTQLGRTY+
Sbjct: 59   YLPGKDLLPTCQSLGEIYLRLENFEEALIYQ-KKHLQLAEEANDTVEKQRACTQLGRTYH 117

Query: 121  EMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSS-FLKEYIDAHNNIGMLQMEL 179
            EMFL+S+DD  +I++AKKYFK AM+LAQ LKE P    SS FL+EYI+AHNNIGML ++L
Sbjct: 118  EMFLKSEDDCEAIQSAKKYFKKAMELAQILKEKPPPGESSGFLEEYINAHNNIGMLDLDL 177

Query: 180  DNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIIC 239
            DN E A+  L +GL+IC+EEEV E D  RSRLHHNLGNV+M LR WD++++HIE DI IC
Sbjct: 178  DNPEAARTILKKGLQICDEEEVREYDAARSRLHHNLGNVFMALRSWDEAKKHIEMDINIC 237

Query: 240  KKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETV 299
             KI H QGEAKGYINL ELH + QKY +A+LCY KA +LA+SM+DE AL  QI+ N + V
Sbjct: 238  HKINHVQGEAKGYINLAELHNKTQKYIDALLCYGKASSLAKSMQDESALVEQIEHNTKIV 297

Query: 300  KKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKH 359
            KK+++VM+EL++EE  LKKL+  M  AKGTS+ERK +LQ NA L  LI+KSSM+FAWLKH
Sbjct: 298  KKSMKVMEELREEELMLKKLSAEMTDAKGTSEERKSMLQVNACLGSLIDKSSMVFAWLKH 357

Query: 360  CEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQ 419
             +Y+KRKK+I+ ELCDK KLSD+F+++GESYQ LR F K++KW+ +S+E +++IGNLEGQ
Sbjct: 358  LQYSKRKKKISDELCDKEKLSDAFMIVGESYQNLRNFRKSLKWFIRSYEGHEAIGNLEGQ 417

Query: 420  ALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEE 479
            ALAK+N+GN LD  G+W GAL A++EGYRIA++ANLPS+QLSALE++HY HM+RF N ++
Sbjct: 418  ALAKINIGNGLDCIGEWTGALQAYEEGYRIALKANLPSIQLSALEDIHYIHMMRFGNAQK 477

Query: 480  ARRLQHEIDKLKESKSEDLEAYDVARDCCSETDTEGNDHLPDVRSSACFPAEMSKSDSGR 539
            A  L+  I  LKES+  + +A    +D CSETD+EG+ ++ + R +AC   +    +S R
Sbjct: 478  ASELKETIQNLKESEHAE-KAECSTQDECSETDSEGHANVSNDRPNACSSPQT--PNSLR 534

Query: 540  SKTLAGLEEVEDDEPLISFLRSSERLPKLKRAYVEKQNIPTEPRELTPKTLSKSTNSQQT 599
            S+ LA L+E  DD PLISFL+  +RL K K+    KQ+  T+    T K  S   +SQQT
Sbjct: 535  SERLADLDEANDDVPLISFLQPGKRLFKRKQV-SGKQDADTDQ---TKKDFSVVADSQQT 590

Query: 600  GGGRKRIRVVLSDDEGDIDNEEGLKGRLQKCP--------------------VEGVATF- 638
              GRKRIRV+LSDDE + + E G       CP                     +G  ++ 
Sbjct: 591  VAGRKRIRVILSDDESETEYELG-------CPKDSSHKVLRQNEEVSEESMYFDGAISYT 643

Query: 639  ------DAINSKSGSASPAHKFQDVPAADFKCTNSSENPINVEESTCSHKFTSSNPTNQY 692
                  D +   S S +P H  +  P     C + S N I VE +    K +  +  +  
Sbjct: 644  DNRAIQDNVEEGSCSYTPLHPIKVAPNVS-NCRSLSNN-IAVETTGRRKKGSQCDVGDSN 701

Query: 693  GNAIRCTGKV--FIASDVNDDQCVTFRIDDDLIHLEVHSCICDDKLDIESLKVELACLYY 750
            G + +    +  F A    +D+ +   I+++  H+ + SC  DD    ES+KVEL CLYY
Sbjct: 702  GTSCKTGAALVNFHAYSKTEDRKIKIEIENE--HIALDSCSHDD----ESVKVELTCLYY 755

Query: 751  LQLPKEKISKGLLPIIQHMKYGGR---SLESFDAFKDQLGKDIIEVSIDGWVQKRLMKLY 807
            LQLP ++ SKGLLPII H++YGGR    LE +   +D     +IE S+DGWV KRLMKLY
Sbjct: 756  LQLPDDEKSKGLLPIIHHLEYGGRVLKPLELYAILRDSSENVVIEASVDGWVHKRLMKLY 815

Query: 808  IECCKELSEAPNMKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKTVALLDLSH 867
            ++CC+ LSE P+MKLLKKLYISEVED++ VSECELQDIS  PLL ALH H  +A+LDLSH
Sbjct: 816  MDCCQSLSEKPSMKLLKKLYISEVEDDINVSECELQDISAAPLLCALHVH-NIAMLDLSH 874

Query: 868  NLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGN 927
            N+LGNGTMEKL+Q F SS Q Y  LTLDLHCNRFGPT LFQICECPVLFTRL VLN+S N
Sbjct: 875  NMLGNGTMEKLKQLFASSSQMYGALTLDLHCNRFGPTALFQICECPVLFTRLEVLNVSRN 934

Query: 928  RLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVT 987
            RLTDACGSYLSTI+KNC+ LYSLN+E+CS+TSRTIQKVA+AL ++S L+QLCIGYN+PV+
Sbjct: 935  RLTDACGSYLSTIVKNCRALYSLNVEHCSLTSRTIQKVANALDSKSGLSQLCIGYNNPVS 994

Query: 988  GNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSL 1047
            G++I NLL KL TL SF+EL++NG+KLS  VVD L  L KT  L+ L++G + +G+DG++
Sbjct: 995  GSSIQNLLAKLATLSSFAELSMNGIKLSSQVVDSLYALVKTPSLSKLLVGSSGIGTDGAI 1054

Query: 1048 QLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALA 1107
            ++ ESL  + +E+VKLDLS CGL S+   K    V+L   ILE N+GGNPI +EG +AL 
Sbjct: 1055 KVTESLCYQKEETVKLDLSCCGLASSFFIKLNQDVTLTSSILEFNVGGNPITEEGISALG 1114

Query: 1108 SLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNAS--KELTLQQNLS 1165
             LL NP   +KVL+LSKC L LAG+L +I+ALS+N  LEELNL+DNA    E    Q + 
Sbjct: 1115 ELLRNPCSNIKVLILSKCHLKLAGLLCIIQALSDNKNLEELNLSDNAKIEDETVFGQPVK 1174

Query: 1166 --SVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFD 1223
              SV  E      K+   + KE +     L   N +C+DLEVADSED++I   +A S   
Sbjct: 1175 ERSVMVEQEHGTCKSVTSMDKEQE-----LCETNMECDDLEVADSEDEQIEEGTATS--- 1226

Query: 1224 NSCTSSCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFSTQAVKTLYCAWSSRSG-A 1282
             S  S  +KN       V+ELS+A+ MA  L++LDLSNNGFS +A++TLY +WSS S   
Sbjct: 1227 -SSLSLPRKN-----HIVKELSTALSMANQLKILDLSNNGFSVEALETLYMSWSSSSSRT 1280

Query: 1283 GPAWKHIKEQIIHFSVEGNKCCRVKPCCRKN 1313
            G A +H+KE+ +HF VEG  CC VK CCRK+
Sbjct: 1281 GIAQRHVKEETVHFYVEGKMCCGVKSCCRKD 1311

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1313
TAIR|locus:2094019	1311	TSK "TONSOKU" [Arabidopsis tha	0.976	0.977	0.543	0.0
ZFIN|ZDB-GENE-041111-230	1427	zgc:171416 "zgc:171416" [Danio	0.209	0.192	0.228	2e-25
UNIPROTKB|Q0P5G1	1374	TONSL "Tonsoku-like protein" [	0.226	0.216	0.280	3.8e-25
RGD|1307483	1367	Tonsl "tonsoku-like, DNA repai	0.268	0.257	0.260	2.3e-24
UNIPROTKB|I3LJX9	1384	TONSL "Uncharacterized protein	0.226	0.215	0.265	3.9e-24
UNIPROTKB|Q96HA7	1378	TONSL "Tonsoku-like protein" [	0.232	0.221	0.274	1.4e-22
UNIPROTKB|E2RN92	1324	TONSL "Uncharacterized protein	0.227	0.225	0.266	5e-22
MGI|MGI:1919999	1363	Tonsl "tonsoku-like, DNA repai	0.233	0.225	0.263	2e-19
UNIPROTKB|G3MYV6	1037	Bt.111263 "Uncharacterized pro	0.173	0.219	0.310	2.7e-13
UNIPROTKB|Q5ZIY8	456	RNH1 "Uncharacterized protein"	0.264	0.760	0.245	8.3e-13

TAIR|locus:2094019 TSK "TONSOKU" [Arabidopsis thaliana (taxid:3702)]

 Score = 3453 (1220.6 bits), Expect = 0., P = 0.
 Identities = 730/1342 (54%), Positives = 945/1342 (70%)

Query:     1 MGRDEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVK 60
             MGR  + ++ AKRAYR A+E G+R+E+ARWAN +GDILKN GEYV+ALKWFRIDYD+SVK
Sbjct:     1 MGR--LDVAAAKRAYRKAEEVGDRREQARWANNVGDILKNHGEYVDALKWFRIDYDISVK 58

Query:    61 YLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYY 120
             YLP K LLPTCQSLGE+YLRLE+F++ALIYQ KKHL+LA++A+D VE+QRACTQLGRTY+
Sbjct:    59 YLPGKDLLPTCQSLGEIYLRLENFEEALIYQ-KKHLQLAEEANDTVEKQRACTQLGRTYH 117

Query:   121 EMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSS-FLKEYIDAHNNIGMLQMEL 179
             EMFL+S+DD  +I++AKKYFK AM+LAQ LKE P    SS FL+EYI+AHNNIGML ++L
Sbjct:   118 EMFLKSEDDCEAIQSAKKYFKKAMELAQILKEKPPPGESSGFLEEYINAHNNIGMLDLDL 177

Query:   180 DNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIIC 239
             DN E A+  L +GL+IC+EEEV E D  RSRLHHNLGNV+M LR WD++++HIE DI IC
Sbjct:   178 DNPEAARTILKKGLQICDEEEVREYDAARSRLHHNLGNVFMALRSWDEAKKHIEMDINIC 237

Query:   240 KKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETV 299
              KI H QGEAKGYINL ELH + QKY +A+LCY KA +LA+SM+DE AL  QI+ N + V
Sbjct:   238 HKINHVQGEAKGYINLAELHNKTQKYIDALLCYGKASSLAKSMQDESALVEQIEHNTKIV 297

Query:   300 KKAIEVMDXXXXXXXXXXXXTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKH 359
             KK+++VM+            +  M  AKGTS+ERK +LQ NA L  LI+KSSM+FAWLKH
Sbjct:   298 KKSMKVMEELREEELMLKKLSAEMTDAKGTSEERKSMLQVNACLGSLIDKSSMVFAWLKH 357

Query:   360 CEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQ 419
              +Y+KRKK+I+ ELCDK KLSD+F+++GESYQ LR F K++KW+ +S+E +++IGNLEGQ
Sbjct:   358 LQYSKRKKKISDELCDKEKLSDAFMIVGESYQNLRNFRKSLKWFIRSYEGHEAIGNLEGQ 417

Query:   420 ALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEE 479
             ALAK+N+GN LD  G+W GAL A++EGYRIA++ANLPS+QLSALE++HY HM+RF N ++
Sbjct:   418 ALAKINIGNGLDCIGEWTGALQAYEEGYRIALKANLPSIQLSALEDIHYIHMMRFGNAQK 477

Query:   480 ARRLQHEIDKLKESKSEDLEAYDVARDCCSETDTEGNDHLPDVRSSACFPAEMSKSDSGR 539
             A  L+  I  LKES+  + +A    +D CSETD+EG+ ++ + R +AC  +     +S R
Sbjct:   478 ASELKETIQNLKESEHAE-KAECSTQDECSETDSEGHANVSNDRPNAC--SSPQTPNSLR 534

Query:   540 SKTLAGLEEVEDDEPLISFLRSSERLPKLKRAYVEKQNIPTEPRELTPKTLSKSTNSQQT 599
             S+ LA L+E  DD PLISFL+  +RL K K+    KQ+  T+    T K  S   +SQQT
Sbjct:   535 SERLADLDEANDDVPLISFLQPGKRLFKRKQVS-GKQDADTDQ---TKKDFSVVADSQQT 590

Query:   600 GGGRKRIRVVLSDDEGDIDNEEGL-KGRLQKC--PVEGVAT----FD-AINS-------- 643
               GRKRIRV+LSDDE + + E G  K    K     E V+     FD AIN         
Sbjct:   591 VAGRKRIRVILSDDESETEYELGCPKDSSHKVLRQNEEVSEESMYFDGAINYTDNRAIQD 650

Query:   644 --KSGSAS--PAHKFQDVPAADFKCTNSSENPINVEESTCSHKFTSSNPTNQYGNAIRCT 699
               + GS S  P H  +  P     C + S N I VE +    K +  +  +  G + + T
Sbjct:   651 NVEEGSCSYTPLHPIKVAPNVS-NCRSLSNN-IAVETTGRRKKGSQCDVGDSNGTSCK-T 707

Query:   700 GKVFI---ASDVNDDQCVTFRIDDDLIHLEVHSCICDDKLDIESLKVELACLYYLQLPKE 756
             G   +   A    +D+ +   I+++  H+ + SC  DD    ES+KVEL CLYYLQLP +
Sbjct:   708 GAALVNFHAYSKTEDRKIKIEIENE--HIALDSCSHDD----ESVKVELTCLYYLQLPDD 761

Query:   757 KISKGLLPIIQHMKYGGRSLESFDAF---KDQLGKDIIEVSIDGWVQKRLMKLYIECCKE 813
             + SKGLLPII H++YGGR L+  + +   +D     +IE S+DGWV KRLMKLY++CC+ 
Sbjct:   762 EKSKGLLPIIHHLEYGGRVLKPLELYAILRDSSENVVIEASVDGWVHKRLMKLYMDCCQS 821

Query:   814 LSEAPNMKLLKKLYXXXXXXXXXXXXXXLQDISVTPLLNALHTHKTVALLDLSHNLLGNG 873
             LSE P+MKLLKKLY              LQDIS  PLL ALH H  +A+LDLSHN+LGNG
Sbjct:   822 LSEKPSMKLLKKLYISEVEDDINVSECELQDISAAPLLCALHVHN-IAMLDLSHNMLGNG 880

Query:   874 TMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDAC 933
             TMEKL+Q F SS Q Y  LTLDLHCNRFGPT LFQICECPVLFTRL VLN+S NRLTDAC
Sbjct:   881 TMEKLKQLFASSSQMYGALTLDLHCNRFGPTALFQICECPVLFTRLEVLNVSRNRLTDAC 940

Query:   934 GSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITN 993
             GSYLSTI+KNC+ LYSLN+E+CS+TSRTIQKVA+AL ++S L+QLCIGYN+PV+G++I N
Sbjct:   941 GSYLSTIVKNCRALYSLNVEHCSLTSRTIQKVANALDSKSGLSQLCIGYNNPVSGSSIQN 1000

Query:   994 LLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESL 1053
             LL KL TL SF+EL++NG+KLS  VVD L  L KT  L+ L++G + +G+DG++++ ESL
Sbjct:  1001 LLAKLATLSSFAELSMNGIKLSSQVVDSLYALVKTPSLSKLLVGSSGIGTDGAIKVTESL 1060

Query:  1054 FSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNP 1113
               + +E+VKLDLS CGL S+   K    V+L   ILE N+GGNPI +EG +AL  LL NP
Sbjct:  1061 CYQKEETVKLDLSCCGLASSFFIKLNQDVTLTSSILEFNVGGNPITEEGISALGELLRNP 1120

Query:  1114 QCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKELTLQQNLSSVNSENLQ 1173
                +KVL+LSKC L LAG+L +I+ALS+N  LEELNL+DNA  E         V   ++ 
Sbjct:  1121 CSNIKVLILSKCHLKLAGLLCIIQALSDNKNLEELNLSDNAKIEDETVFG-QPVKERSVM 1179

Query:  1174 PALKTSDCVS-KEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFDNSCTSSCQK 1232
                +   C S   +D +Q  L   N +C+DLEVADSED++I   +A S    S  S  +K
Sbjct:  1180 VEQEHGTCKSVTSMDKEQE-LCETNMECDDLEVADSEDEQIEEGTATS----SSLSLPRK 1234

Query:  1233 NSSFECQFVQELSSAIGMAKPLQLLDLSNNGFSTQAVKTLYCAWSSRSG-AGPAWKHIKE 1291
             N       V+ELS+A+ MA  L++LDLSNNGFS +A++TLY +WSS S   G A +H+KE
Sbjct:  1235 N-----HIVKELSTALSMANQLKILDLSNNGFSVEALETLYMSWSSSSSRTGIAQRHVKE 1289

Query:  1292 QIIHFSVEGNKCCRVKPCCRKN 1313
             + +HF VEG  CC VK CCRK+
Sbjct:  1290 ETVHFYVEGKMCCGVKSCCRKD 1311

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009934 "regulation of meristem structural organization" evidence=IMP

GO:0009933 "meristem structural organization" evidence=IMP

GO:0051301 "cell division" evidence=IMP

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0016020 "membrane" evidence=IDA

ZFIN|ZDB-GENE-041111-230 zgc:171416 "zgc:171416" [Danio rerio (taxid:7955)]

 Score = 198 (74.8 bits), Expect = 2.0e-25, Sum P(3) = 2.0e-25
 Identities = 65/284 (22%), Positives = 131/284 (46%)

Query:     7 QMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKH 66
             ++ + ++A   A+   N +EEA   N +G++    G+Y  A++  R +  +S        
Sbjct:     6 EIKQLQKAKSKAQSSNNLKEEASLCNQLGEVYAKTGDYQAAIEEHRQELALSEILHDVIG 65

Query:    67 LLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRS 126
                  + +GE Y  L + + AL +Q + HL LA+   D  E+QRA   +GRTY  +F  S
Sbjct:    66 SAVANRKIGECYAELGNIEAALKHQ-RLHLNLARSVHDAAEEQRALATIGRTYLFLF-DS 123

Query:   127 DDDHYSIRNAKKYFKSAMKLAQTLKENPATSRS-SFLKEYIDAHNNIGMLQMELDNLEEA 185
             D    S+++A+  FK ++ +     E   + R  S +K  +    N+G +   +   +  
Sbjct:   124 DQSANSLKHAEDAFKKSLAIVDERLEGTVSPREISEMKARLLL--NLGCVYDGMKEPQRC 181

Query:   186 KKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHC 245
                + + + I  +  + ED     R + NLG+++       ++    EQ     +K++  
Sbjct:   182 SDLIRQSIYIAEKNNLLED---LYRANFNLGSIHFRNGQHSRAMRCFEQSKECARKMKDK 238

Query:   246 QGEAKGYINLGELHYRVQKYDEAILCYQKALNL-AQSMEDEDAL 288
               E++ + ++G++   +  +  A    +KA  L +Q   D +A+
Sbjct:   239 FSESECFHSIGKILLHLGDFAAARRSLKKAFCLGSQQPSDREAV 282

GO:0000724 "double-strand break repair via homologous recombination" evidence=ISS

GO:0005662 "DNA replication factor A complex" evidence=ISS

GO:0042393 "histone binding" evidence=ISS

GO:0043596 "nuclear replication fork" evidence=ISS

GO:0035101 "FACT complex" evidence=ISS

GO:0042555 "MCM complex" evidence=ISS

GO:0031297 "replication fork processing" evidence=ISS

GO:0006281 "DNA repair" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q0P5G1 TONSL "Tonsoku-like protein" [Bos taurus (taxid:9913)]

 Score = 224 (83.9 bits), Expect = 3.8e-25, Sum P(3) = 3.8e-25
 Identities = 91/324 (28%), Positives = 138/324 (42%)

Query:   759 SKGLLPIIQHMKYGGRSLESFDAFKDQL-GKDIIEVSIDGWVQKRLMKLYIECCKELSEA 817
             + GLLP +   K G   L   D   D L   + +   +  W    L   Y   C+ L + 
Sbjct:   967 ASGLLPRLSLQKEGAL-LAPQDPIPDVLQSNEEVLAEVTSWDLPPLRDRYRRACQTLEQG 1025

Query:   818 PNMKLLKKLYXXXXXXXXXXXXXXLQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEK 877
              + ++L+ +               L+   +TPLL AL  H  +  L L+ N LG+G + +
Sbjct:  1026 EHQQVLQAVEHQGSAPTFSACSLALRQAQLTPLLRALKLHSALRELRLAGNRLGDGCVAE 1085

Query:   878 LQQFFISSCQNYVDLTL-DLHCNRFGPTTLFQICEC---PVLFTRLGVLNLSGNRLTDAC 933
             L    +++      LTL DL  N  GP  L Q+            L  L+LS N L D C
Sbjct:  1086 L----LATLDTVPGLTLLDLSSNHLGPEGLRQLAAGLLGQTTLQNLEELDLSMNPLGDGC 1141

Query:   934 GSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGA--EST--LAQLCIGYNS----- 984
             G  L++IL+ C VL +L+++ C            ALG+  + T  L  L + YN      
Sbjct:  1142 GQALASILRACPVLCTLHLQACGFGPGFFLSHQVALGSAFQDTKCLKTLSLSYNGLGPTA 1201

Query:   985 --PVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLG 1042
               PV G+   + L++L+ L S      + + L+ PVV  L Q  +   L HL L   +LG
Sbjct:  1202 LGPVLGSLPAHSLLRLE-LSSVVT-GKSDVGLTDPVVHYLSQ--EGCVLEHLSLSANHLG 1257

Query:  1043 SDGSLQLVESLFSRAQESVKLDLS 1066
              D  ++ +          V LDLS
Sbjct:  1258 -DKDVRALSRCLPLCPSLVSLDLS 1280

GO:0000724 "double-strand break repair via homologous recombination" evidence=ISS

GO:0031297 "replication fork processing" evidence=ISS

GO:0042393 "histone binding" evidence=ISS

GO:0005662 "DNA replication factor A complex" evidence=ISS

GO:0035101 "FACT complex" evidence=ISS

GO:0042555 "MCM complex" evidence=ISS

GO:0043596 "nuclear replication fork" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

RGD|1307483 Tonsl "tonsoku-like, DNA repair protein" [Rattus norvegicus (taxid:10116)]

 Score = 222 (83.2 bits), Expect = 2.3e-24, Sum P(4) = 2.3e-24
 Identities = 99/380 (26%), Positives = 155/380 (40%)

Query:   761 GLLPIIQHMKYGGRSLESFDAFKDQL-GKDIIEVSIDGWVQKRLMKLYIECCKELSEAPN 819
             GLLP +  ++  G  L   D   D L   D +   +  W    L   Y   C+ L +  +
Sbjct:   966 GLLPRLT-LRKDGALLAPQDPIPDVLQSNDEVMAEVTSWDLPPLKDRYRRACQSLGQGEH 1024

Query:   820 MKLLKKLYXXXXXXXXXXXXXXLQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQ 879
              ++L+ +               L    +TPLL AL  H  +  L LS N LG+    +L 
Sbjct:  1025 QQVLQAMEHQSSSPSFSACSLALCQAQLTPLLRALKLHTALRELRLSGNRLGDPCATELL 1084

Query:   880 QFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPV---LFTRLGVLNLSGNRLTDACGSY 936
                + +  N V   LDL  N  GP  L Q+ E  +    F  +  L+LS N L D C   
Sbjct:  1085 AT-LGTMPNLV--LLDLSSNHLGPEGLRQLVEGSLGQTAFQNVEELDLSMNPLGDGCAQA 1141

Query:   937 LSTILKNCKVLYSLNIENCSITSRTIQKVADALGAE----STLAQLCIGYNSPVTGNAIT 992
             L+++L+ C VL +L ++ C  +         ALG+       L  L + YN+ +   A+ 
Sbjct:  1142 LASLLRTCPVLRTLRLQACGFSPSFFLSHQAALGSAFKDAEHLKTLSLSYNT-LGAPALA 1200

Query:   993 NLLVKLDTLKSFSELNLNGLKLSKP---VVDRLCQ-LAKTSC-LTHLMLGCTNLGSDGSL 1047
              +L  L T  +   L L+ +  SK    +++ + + L K  C L HL L    L SD ++
Sbjct:  1201 RVLQSLPTC-TLLHLELSSVAASKSNSSLIEPVIKYLTKEGCALAHLTLSANCL-SDKAV 1258

Query:  1048 QLVESLFSRAQESVKLDLSYCGLESTCI---HKFTASVSLVHGILELNLGG----NPIMK 1100
             + +            LDLS    E +C       +A      G+   +L G     P+  
Sbjct:  1259 RELSRCLPSCPSLTSLDLS-ANPEVSCAGLEELLSALQERPQGLSFFDLSGCSIQGPLNS 1317

Query:  1101 EGANALASLLMNPQCCLKVL 1120
             +  + + S L   Q C K L
Sbjct:  1318 DLWDKILSQLQELQLCSKDL 1337

GO:0000724 "double-strand break repair via homologous recombination" evidence=ISO;ISS

GO:0005634 "nucleus" evidence=ISO

GO:0005662 "DNA replication factor A complex" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0031297 "replication fork processing" evidence=ISO;ISS

GO:0035101 "FACT complex" evidence=ISO;ISS

GO:0042393 "histone binding" evidence=ISO;ISS

GO:0042555 "MCM complex" evidence=ISO;ISS

GO:0043596 "nuclear replication fork" evidence=ISO;ISS

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|I3LJX9 TONSL "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 199 (75.1 bits), Expect = 3.9e-24, Sum P(4) = 3.9e-24
 Identities = 85/320 (26%), Positives = 134/320 (41%)

Query:   761 GLLPIIQHMKYGGRSLESFDAFKDQL-GKDIIEVSIDGWVQKRLMKLYIECCKELSEAPN 819
             GLLP +   K G   L   D     L   + +   +  W    L   Y   C+ L +  +
Sbjct:   979 GLLPRLSLQKEGAL-LAPQDPIPAVLQSNEEVSAEVTSWDLPPLTDRYRRACQSLEQGEH 1037

Query:   820 MKLLKKLYXXXXXXXXXXXXXXLQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQ 879
              ++L+ +               L+   +TPLL AL  H  +  L L+ N LG+G + +L 
Sbjct:  1038 QQVLQVMEHQGSGPSFSACSLALRQAQLTPLLRALKLHSALRELRLAGNRLGDGCVAEL- 1096

Query:   880 QFFISSCQNYVDLTL-DLHCNRFGPTTLFQICE-CP--VLFTRLGVLNLSGNRLTDACGS 935
                +++      LTL DL  N  GP  L Q+    P       L  L+LS N L D CG 
Sbjct:  1097 ---LAALDTLPGLTLLDLSSNHLGPEGLRQLAAGLPGQAALQNLEELDLSMNPLGDGCGL 1153

Query:   936 YLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAE----STLAQLCIGYNSPVTGNAI 991
              L++IL+ C +L +L+++ C            ALG+       L  L + YN  +   A+
Sbjct:  1154 ALASILQACPLLSALHLQACGFGPSFFLNHQAALGSAFQDAKCLQTLSLSYNF-LGATAL 1212

Query:   992 TNLLVKLDTLKSFSELNLNGLKLSK--P-VVDRLCQ-LAKTSC-LTHLMLGCTNLGSDGS 1046
                L  L    +   L L+ +  SK  P +++ + + L +  C L HL L   +L  D +
Sbjct:  1213 AQALRSLPA-HTLLRLELSAVAASKGNPGLLEPVLRYLTEEGCTLEHLSLSANHL-DDQA 1270

Query:  1047 LQLVESLFSRAQESVKLDLS 1066
             ++ +          V LDLS
Sbjct:  1271 VRELSRCLPLCPSLVSLDLS 1290

GO:0042555 "MCM complex" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0035101 "FACT complex" evidence=IEA

GO:0031297 "replication fork processing" evidence=IEA

GO:0005662 "DNA replication factor A complex" evidence=IEA

GO:0000724 "double-strand break repair via homologous recombination" evidence=IEA

UNIPROTKB|Q96HA7 TONSL "Tonsoku-like protein" [Homo sapiens (taxid:9606)]

 Score = 200 (75.5 bits), Expect = 1.4e-22, Sum P(3) = 1.4e-22
 Identities = 90/328 (27%), Positives = 130/328 (39%)

Query:   761 GLLPIIQHMKYGGRSLESFDAFKDQL-GKDIIEVSIDGWVQKRLMKLYIECCKELSEAPN 819
             GLLP +   K G   L   D   D L   D +   +  W    L   Y   C+ L +  +
Sbjct:   973 GLLPRLTLRKEGAL-LAPQDLIPDVLQSNDEVLAEVTSWDLPPLTDRYRRACQSLGQGEH 1031

Query:   820 MKLLKKLYXXXXXXXXXXXXXXLQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQ 879
              ++L+ +               L    +TPLL AL  H  +  L L+ N LG+  + +L 
Sbjct:  1032 QQVLQAVELQGLGLSFSACSLALDQAQLTPLLRALKLHTALRELRLAGNRLGDKCVAEL- 1090

Query:   880 QFFISSCQNYVDLTL-DLHCNRFGPTTLFQICE-CPVLFT--RLGVLNLSGNRLTDACGS 935
                +++      L L DL  N  GP  L Q+    P   T   L  L+LS N L D CG 
Sbjct:  1091 ---VAALGTMPSLALLDLSSNHLGPEGLRQLAMGLPGQATLQSLEELDLSMNPLGDGCGQ 1147

Query:   936 YLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAE----STLAQLCIGYNSPVTGNAI 991
              L+++L  C +L +L ++ C            ALG+       L  L + YN+ +   A+
Sbjct:  1148 SLASLLHACPLLSTLRLQACGFGPSFFLSHQTALGSAFQDAEHLKTLSLSYNA-LGAPAL 1206

Query:   992 TNLLVKLDTLKSFSELNLNGLKLSKPVVDRL----CQLAKTSC-LTHLMLGCTNLGSDGS 1046
                L  L    +   L L+ +   K   D +      LAK  C L HL L   +LG    
Sbjct:  1207 ARTLQSLPA-GTLLHLELSSVAAGKGDSDLMEPVFRYLAKEGCALAHLTLSANHLGDKAV 1265

Query:  1047 LQLVESLFSRAQESVKLDLSYCGLESTC 1074
               L   L S     + LDLS    E +C
Sbjct:  1266 RDLCRCL-SLCPSLISLDLS-ANPEISC 1291

GO:0005737 "cytoplasm" evidence=IEA

GO:0031297 "replication fork processing" evidence=IMP

GO:0000724 "double-strand break repair via homologous recombination" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042555 "MCM complex" evidence=IDA

GO:0043596 "nuclear replication fork" evidence=IDA

GO:0042393 "histone binding" evidence=IDA

GO:0035101 "FACT complex" evidence=IDA

GO:0005662 "DNA replication factor A complex" evidence=IDA

GO:0003714 "transcription corepressor activity" evidence=TAS

GO:0042994 "cytoplasmic sequestering of transcription factor" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|E2RN92 TONSL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 198 (74.8 bits), Expect = 5.0e-22, Sum P(3) = 5.0e-22
 Identities = 85/319 (26%), Positives = 135/319 (42%)

Query:   761 GLLPIIQHMKYGGRSLESFDAFKDQL-GKDIIEVSIDGWVQKRLMKLYIECCKELSEAPN 819
             GLLP +   K G   L   D   D L   + +   +  W    L   Y   C+ L E  +
Sbjct:   920 GLLPRLLLRKEGAL-LAPQDPIPDVLQSNEEVLAEVTSWDLPPLTDRYRRACQSLEEEEH 978

Query:   820 MKLLKKLYXXXXXXXXXXXXXXLQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQ 879
              ++L+ +               L+   +TPLL AL  H  +  L L+ N L +G   +L 
Sbjct:   979 QQVLQAMGCQGSGPSFSACSLALRQTQLTPLLRALKLHTALRELRLAGNRLADGCAAELL 1038

Query:   880 QFFISSCQNYVDLTLDLHCNRFGPTTLFQICEC---PVLFTRLGVLNLSGNRLTDACGSY 936
                + +    V   LDL  N  GP  L Q+            L  L+LS N L D CG  
Sbjct:  1039 AA-LGTLPGLV--LLDLSSNHLGPEGLRQLATGLREQTALQNLQELDLSMNPLGDGCGQA 1095

Query:   937 LSTILKNCKVLYSLNIENCSITSRTIQKVADALGA---EST-LAQLCIGYNSPVTGNAIT 992
             L+ +L+ C  L +L+++ C +    +     ALG+   ++T L  L + YN   T  A+ 
Sbjct:  1096 LAFVLQACPSLSTLHLQACGLGPGFLLSHQAALGSAFQDATHLKTLSLSYNILGT-TALA 1154

Query:   993 NLLVKLDTLKSFSELNLNGLKLSKP---VVDRLCQ-LAKTSC-LTHLMLGCTNLGSDGSL 1047
               L  L   ++   L L+ +  SK    +V+ + + L +  C L+HL L   +LG D ++
Sbjct:  1155 RALQSLPA-RTLQRLELSSVAASKSDSGLVEPVVRYLTEEGCALSHLSLSANHLG-DKAV 1212

Query:  1048 QLVESLFSRAQESVKLDLS 1066
             + +          + LDLS
Sbjct:  1213 KDLSRCLPCCPSLISLDLS 1231

GO:0042555 "MCM complex" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0035101 "FACT complex" evidence=IEA

GO:0031297 "replication fork processing" evidence=IEA

GO:0005662 "DNA replication factor A complex" evidence=IEA

GO:0000724 "double-strand break repair via homologous recombination" evidence=IEA

MGI|MGI:1919999 Tonsl "tonsoku-like, DNA repair protein" [Mus musculus (taxid:10090)]

 Score = 201 (75.8 bits), Expect = 2.0e-19, Sum P(3) = 2.0e-19
 Identities = 86/326 (26%), Positives = 131/326 (40%)

Query:   761 GLLPIIQHMKYGGRSLESFDAFKDQL-GKDIIEVSIDGWVQKRLMKLYIECCKELSEAPN 819
             GLLP +  ++  G  L   D   D L   D +   +  W    L   Y   C  L +  +
Sbjct:   962 GLLPRLT-LRKDGALLAPQDPIPDVLQSNDEVLAEVTSWDLPPLKDRYRRACLSLGQGEH 1020

Query:   820 MKLLKKLYXXXXXXXXXXXXXXLQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQ 879
              ++L  +               L    +TPLL AL  H  +  L L+ N LG+    +L 
Sbjct:  1021 QQVLHAMDHQSSSPSFSACSLALCQAQLTPLLRALKLHTALRELRLAGNRLGDACATELL 1080

Query:   880 QFFISSCQNYVDLTLDLHCNRFGPTTLFQICECP---VLFTRLGVLNLSGNRLTDACGSY 936
                + +  N V   LDL  N  G   L Q+ E          L  L+LS N L D CG  
Sbjct:  1081 AT-LGTTPNLV--LLDLSSNHLGQEGLRQLVEGSSGQAALQNLEELDLSMNPLGDGCGQA 1137

Query:   937 LSTILKNCKVLYSLNIENCSITSRTIQKVADALGAEST----LAQLCIGYNSPVTGNAIT 992
             L+++L+ C +L +L ++ C  +S        ALG        L  L + YN  +   A+ 
Sbjct:  1138 LASLLRACPMLSTLRLQACGFSSSFFLSHQAALGGAFQDAVHLKTLSLSYNL-LGAPALA 1196

Query:   993 NLLVKLD--TLKSFSELNLNGLKLSKPVVDRLCQ-LAKTSC-LTHLMLGCTNLGSDGSLQ 1048
              +L  L   TLK     ++   K +  +++ + + L K  C L HL L    LG D +++
Sbjct:  1197 RVLQTLPACTLKRLDLSSVAASKSNSGIIEPVIKYLTKEGCALAHLTLSANCLG-DKAVR 1255

Query:  1049 LVESLFSRAQESVKLDLSYCGLESTC 1074
              +            LDLS    E +C
Sbjct:  1256 ELSRCLPCCPSLTSLDLS-ANPEVSC 1280

GO:0000724 "double-strand break repair via homologous recombination" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0031297 "replication fork processing" evidence=ISO

GO:0042393 "histone binding" evidence=ISO

GO:0043596 "nuclear replication fork" evidence=ISO

UNIPROTKB|G3MYV6 Bt.111263 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 215 (80.7 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 74/238 (31%), Positives = 116/238 (48%)

Query:   922 LNLSGNRLTDACGSYLSTILKN--CKVLYSLNIENCSITSRTIQKVADALGAESTLAQLC 979
             L+LS N L  A    +  +L +  C + Y L +E  ++++   + +A  L +   L +LC
Sbjct:   779 LDLSSNSLDAAVSRGVFRMLGHSACGLKY-LWLEKGNLSAAACEDLASLLTSTPRLTRLC 837

Query:   980 IGYNSPVTGNAITNLLVKLDTLKS-FSELNLNGLKLSKPVVDRLCQ-LAKTSCLTHLMLG 1037
             +G N P+    +  L   L   +     L L   +LS P    L   L ++  LTHL L 
Sbjct:   838 LGLN-PLGDEGVQLLCGSLTRPECVLQRLELWCCRLSTPSCRHLSDALLRSRSLTHLNLR 896

Query:  1038 CTNLGSDGSLQLVESLFSRAQESVK-LDLSYCGLESTCIHKFTASVSLVHGILE-LNLGG 1095
               +LG DG ++L+ S   RA  +++ L+LS+C L      +   ++   +G L+ L++G 
Sbjct:   897 RNSLG-DGGVKLLSSALGRADCALQSLNLSHCSLTVAGCRELAHALKH-NGHLKILDVGN 954

Query:  1096 NPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADN 1153
             N I  EG   L S+L +P C L+ L L KC L  A    L   L  + +LE LNL  N
Sbjct:   955 NDIQDEGVKELCSVLKSPSCVLQTLGLEKCSLTAACCRPLSSVLGSSKSLENLNLLGN 1012

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q5ZIY8 RNH1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 212 (79.7 bits), Expect = 8.3e-13, Sum P(2) = 8.3e-13
 Identities = 89/362 (24%), Positives = 152/362 (41%)

Query:   922 LNLSGNRLTDACGSYL--STILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLC 979
             L L+ N L DA   YL    +  +C  L  L ++NC++TS + + +   L A+ +L +L 
Sbjct:    56 LKLNNNELGDAGIEYLCKGLLTPSCS-LQKLWLQNCNLTSASCETLRSVLSAQPSLTELH 114

Query:   980 IGYNSPVTGNAITNLLVK--LDTLKSFSELNLNGLKLSKPVVDRL-CQLAKTSCLTHLML 1036
             +G N    G A   +L +  ++      +L L   +L+  +V+ L   L     L  L L
Sbjct:   115 VGDNK--LGTAGVKVLCQGLMNPNCKLQKLQLEYCELTADIVEALNAALQAKPTLKELSL 172

Query:  1037 GCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGN 1096
                 LG     QL   L   + +   L L  CG+ S      +A +S    +L+L +G N
Sbjct:   173 SNNTLGDTAVKQLCRGLVEASCDLELLHLENCGITSDSCRDISAVLSSKPSLLDLAVGDN 232

Query:  1097 PIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASK 1156
              I   G   L   L++P C ++ L L  C L  A    L +  S  +TL E++L DN  +
Sbjct:   233 KIGDTGLALLCQGLLHPNCKIQKLWLWDCDLTSASCKDLSRVFSTKETLLEVSLIDNNLR 292

Query:  1157 ELTLQQNLSSVNSE--NLQPALKTSDC-VSKEVDTDQHGLFAMNTDCNDLEVADSEDDKI 1213
             +  ++    ++     +LQ  L   +C ++         + ++N     L + +++    
Sbjct:   293 DSGMEMLCQALKDPKAHLQE-LWVRECGLTAACCKAVSSVLSVNKHLQVLHIGENKLGNA 351

Query:  1214 RVESAASGFDN-SCT--SSCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFSTQAVK 1270
              VE    G  + +C   S    N          L++ +   + L  LDLS N    + V 
Sbjct:   352 GVEILCEGLLHPNCNIHSLWLGNCDITAACCATLANVMVTKQNLTELDLSYNTLEDEGVM 411

Query:  1271 TL 1272
              L
Sbjct:   412 KL 413

GO:0005737 "cytoplasm" evidence=IEA

GO:0008428 "ribonuclease inhibitor activity" evidence=IEA

GO:0032311 "angiogenin-PRI complex" evidence=IEA

GO:0045765 "regulation of angiogenesis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6Q4D0	TONS_ARATH	No assigned EC number	0.5514	0.9695	0.9710	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_VII000331 hypothetical protein (1353 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1313
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-11
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	4e-09
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-08
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	7e-08
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	5e-06
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-05
pfam13414	69	pfam13414, TPR_11, TPR repeat	3e-05
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	5e-05
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	6e-05
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	8e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-04
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	1e-04
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	1e-04
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	9e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.004

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 67.0 bits (164), Expect = 2e-11
 Identities = 80/324 (24%), Positives = 123/324 (37%), Gaps = 16/324 (4%)

Query: 810  CCKELSEAPNMKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNL 869
              + L      +LL KL   +V     +    L + +   L +AL    ++  L LS N 
Sbjct: 6    KGELLKTERATELLPKLLCLQVLR---LEGNTLGEEAAKALASALRPQPSLKELCLSLNE 62

Query: 870  LGNGT--MEKLQQFFISSCQNYVDLTLDLHCNRFGPTT--LFQICECPVLFTRLGVLNLS 925
             G     ++ L Q     C       LDL  N  GP    + +     +  + L  L L+
Sbjct: 63   TGRIPRGLQSLLQGLTKGCGLQ---ELDLSDNALGPDGCGVLESL---LRSSSLQELKLN 116

Query: 926  GNRLTDACGSYLSTILKNCKV-LYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNS 984
             N L D     L+  LK+    L  L +    +   + + +A AL A   L +L +  N+
Sbjct: 117  NNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLA-NN 175

Query: 985  PVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQ-LAKTSCLTHLMLGCTNLGS 1043
             +    I  L   L    +   L+LN   L+      L + LA    L  L LG  NL  
Sbjct: 176  GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235

Query: 1044 DGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGA 1103
             G+  L  +L S     + L LS   +           ++    +LEL+L GN   +EGA
Sbjct: 236  AGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGA 295

Query: 1104 NALASLLMNPQCCLKVLVLSKCQL 1127
              LA  L+ P   L+ L +     
Sbjct: 296  QLLAESLLEPGNELESLWVKDDSF 319

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 53.9 bits (130), Expect = 4e-09
 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 210 RLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGE-AKGYINLGELHYRVQKYDEA 268
              +NL  V   L  +D++ E +E+ + + +++     E A+   NL  L+  +  YDEA
Sbjct: 6   AALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEA 65

Query: 269 ILCYQKALNLAQS 281
           +   +KAL L ++
Sbjct: 66  LEYLEKALALREA 78

Length = 78

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 52.4 bits (126), Expect = 3e-08
 Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 15/112 (13%)

Query: 167 DAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWD 226
           +A  N+G L  +L + +EA ++  + LE+  +             ++NL   Y +L  ++
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNAD---------AYYNLAAAYYKLGKYE 51

Query: 227 KSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNL 278
           ++ E  E+ + +          AK Y NLG  +Y++ KY+EA+  Y+KAL L
Sbjct: 52  EALEDYEKALELDPD------NAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97

Length = 100

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 55.2 bits (131), Expect = 7e-08
 Identities = 59/319 (18%), Positives = 119/319 (37%), Gaps = 42/319 (13%)

Query: 6   MQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEK 65
           ++      A           E          +L+  GE  EAL+      + +++ LP  
Sbjct: 1   LKDLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALE----LLEEALELLPNS 56

Query: 66  HLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLR 125
            L      L    L+L   ++AL     + LE A +   L     A   LG     +   
Sbjct: 57  DLAGLLLLLALALLKLGRLEEAL-----ELLEKALELELLPNLAEALLNLGLLLEAL--- 108

Query: 126 SDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEA 185
                       KY ++   L + L  +P    +  L               EL + EEA
Sbjct: 109 -----------GKYEEALELLEKALALDPDPDLAEALLALG--------ALYELGDYEEA 149

Query: 186 KKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHC 245
            +   + LE+        + +  +     LG +   L  ++++ E +E+ + +    +  
Sbjct: 150 LELYEKALEL------DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDD-- 201

Query: 246 QGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEV 305
              A+  +NLG L+ ++ KY+EA+  Y+KAL L     +     + +   +   ++A+E 
Sbjct: 202 ---AEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEA 258

Query: 306 MDELKKEEQNLKKLTRNMI 324
           +++  + + +L  L   ++
Sbjct: 259 LEKALELDPDLYNLGLALL 277

Length = 291

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 49.7 bits (119), Expect = 5e-06
 Identities = 38/125 (30%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1031 LTHLMLGCTNLGSDGS-LQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGIL 1089
            L  L L     G     LQ +    ++     +LDLS   L          S+     + 
Sbjct: 53   LKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL-ESLLRSSSLQ 111

Query: 1090 ELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELN 1149
            EL L  N +   G   LA  L +    L+ LVL + +L  A    L KAL  N  L+ELN
Sbjct: 112  ELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELN 171

Query: 1150 LADNA 1154
            LA+N 
Sbjct: 172  LANNG 176

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 6/98 (6%)

Query: 214 NLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQ 273
           NLGN+Y +L  +D++ E+ E+ +    +++    +A  Y NL   +Y++ KY+EA+  Y+
Sbjct: 5   NLGNLYYKLGDYDEALEYYEKAL----ELDPDNADA--YYNLAAAYYKLGKYEEALEDYE 58

Query: 274 KALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKK 311
           KAL L                 +   ++A+E  ++  +
Sbjct: 59  KALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALE 96

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 7/73 (9%)

Query: 208 RSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRV-QKYD 266
            +    NLGN   +L  +D++ E  E+ +      E     A+ Y NL   + ++ + Y+
Sbjct: 2   NAEALKNLGNALFKLGDYDEAIEAYEKAL------ELDPDNAEAYYNLALAYLKLGKDYE 55

Query: 267 EAILCYQKALNLA 279
           EA+   +KAL L 
Sbjct: 56  EALEDLEKALELD 68

Length = 69

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 41.2 bits (98), Expect = 5e-05
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 249 AKGYINLGELHYRVQKYDEAILCYQKALNLAQS 281
           AK   NLG  + ++ KYDEA+  Y+KAL L  +
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPN 33

Length = 34

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 42.4 bits (100), Expect = 6e-05
 Identities = 12/66 (18%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 386 IGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQ-ALAKVNMGNVLDSNGDWAGALDAFQ 444
           +    ++L  +++A++   K+ E+ + +G    + A A  N+  +  + GD+  AL+  +
Sbjct: 11  LALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALEYLE 70

Query: 445 EGYRIA 450
           +   + 
Sbjct: 71  KALALR 76

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELR 223
           +   A NN+ ++   L + +EA + L + LE+    E+ ED    +R  +NL  +Y+ L 
Sbjct: 3   DLAAALNNLALVLRRLGDYDEALELLEKALEL--ARELGEDHPETARALNNLARLYLALG 60

Query: 224 MWDKSREHIEQ 234
            +D++ E++E+
Sbjct: 61  DYDEALEYLEK 71

Length = 78

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 24/131 (18%), Positives = 50/131 (38%), Gaps = 32/131 (24%)

Query: 111 ACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHN 170
           A   LG  YY++                Y ++     + L+ +P         +  DA+ 
Sbjct: 2   ALLNLGNLYYKL--------------GDYDEALEYYEKALELDP---------DNADAYY 38

Query: 171 NIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSRE 230
           N+     +L   EEA +   + LE+  +           + ++NLG  Y +L  ++++ E
Sbjct: 39  NLAAAYYKLGKYEEALEDYEKALELDPDNA---------KAYYNLGLAYYKLGKYEEALE 89

Query: 231 HIEQDIIICKK 241
             E+ + +   
Sbjct: 90  AYEKALELDPN 100

Length = 100

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 40.5 bits (96), Expect = 1e-04
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 249 AKGYINLGELHYRVQKYDEAILCYQKALNLAQSM 282
           A+   NLG  + ++  YDEA+  Y+KAL L  + 
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 249 AKGYINLGELHYRVQKYDEAILCYQKALNLA 279
           A+   NLG  +Y++  Y+EA+  Y+KAL L 
Sbjct: 1   AEALYNLGLAYYKLGDYEEALEAYEKALELD 31

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 42.5 bits (98), Expect = 9e-04
 Identities = 40/279 (14%), Positives = 97/279 (34%), Gaps = 17/279 (6%)

Query: 119 YYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQME 178
              +     +    +       +   +LA+ L+            +       + +  ++
Sbjct: 12  LEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLK 71

Query: 179 LDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIII 238
           L  LEEA + L + LE+       E     +    NLG +   L  ++++ E +E+ + +
Sbjct: 72  LGRLEEALELLEKALEL-------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALAL 124

Query: 239 CKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIET 298
               +     A+  + LG   Y +  Y+EA+  Y+KAL L   + +       +   +E 
Sbjct: 125 DPDPD----LAEALLALG-ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEA 179

Query: 299 VKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQ-----NASLDRLIEKSSMI 353
           + +  E ++ L+K  +         ++  G    +    ++       +L+   + +  +
Sbjct: 180 LGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEAL 239

Query: 354 FAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQK 392
           +          R +     L    +L      +G +   
Sbjct: 240 YNLALLLLELGRYEEALEALEKALELDPDLYNLGLALLL 278

Length = 291

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 41.6 bits (98), Expect = 0.002
 Identities = 46/162 (28%), Positives = 63/162 (38%), Gaps = 7/162 (4%)

Query: 997  KLDTLKSFSELNLNGLKL--SKPVVDRL-CQLAKTSCLTHLMLGCTNLGSDGSLQLVESL 1053
             L    S  EL L+  +       +  L   L K   L  L L    LG DG   ++ESL
Sbjct: 46   ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC-GVLESL 104

Query: 1054 FSRAQESVKLDLSYCGLESTCI-HKFTASVSLVHGILELNLGGNPIMKEGANALASLLMN 1112
               +     L L+  GL    +         L   + +L LG N +      ALA  L  
Sbjct: 105  LRSSSLQE-LKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRA 163

Query: 1113 PQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNA 1154
                LK L L+   +G AG+  L + L  N  LE L+L +N 
Sbjct: 164  -NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG 204

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 6/65 (9%)

Query: 386 IGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQE 445
           +G  Y KL  +++A+++Y K+ E+          A A  N+       G +  AL+ +++
Sbjct: 6   LGNLYYKLGDYDEALEYYEKALELDPD------NADAYYNLAAAYYKLGKYEEALEDYEK 59

Query: 446 GYRIA 450
              + 
Sbjct: 60  ALELD 64

Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1313
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.95
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.95
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.95
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.93
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.93
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.93
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.93
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.93
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.92
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.92
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.92
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.91
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.9
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.9
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.9
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.89
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.89
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.88
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.88
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.88
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.88
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.86
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.86
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.85
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.84
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.84
KOG1126	638	consensus DNA-binding cell division cycle control	99.82
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.82
KOG2003	840	consensus TPR repeat-containing protein [General f	99.82
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.81
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.8
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.78
KOG1126	638	consensus DNA-binding cell division cycle control	99.78
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.77
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.76
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.76
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.76
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.74
KOG2003	840	consensus TPR repeat-containing protein [General f	99.74
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.73
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.73
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.72
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.72
KOG4308	478	consensus LRR-containing protein [Function unknown	99.72
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.7
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.7
KOG2076	895	consensus RNA polymerase III transcription factor	99.69
KOG4308	478	consensus LRR-containing protein [Function unknown	99.69
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.67
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.66
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.66
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.65
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.64
PRK14574	822	hmsH outer membrane protein; Provisional	99.64
KOG2076	895	consensus RNA polymerase III transcription factor	99.61
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.6
PRK04841	903	transcriptional regulator MalT; Provisional	99.6
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	99.6
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	99.59
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.59
PRK12370	553	invasion protein regulator; Provisional	99.58
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.58
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.58
PLN03218	1060	maturation of RBCL 1; Provisional	99.57
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.57
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.56
PRK12370	553	invasion protein regulator; Provisional	99.55
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.55
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.54
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.54
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.54
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.54
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.54
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.53
PRK14574	822	hmsH outer membrane protein; Provisional	99.53
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.52
PRK04841	903	transcriptional regulator MalT; Provisional	99.52
KOG1129	478	consensus TPR repeat-containing protein [General f	99.52
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.52
PRK11189	296	lipoprotein NlpI; Provisional	99.52
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.51
PRK11189	296	lipoprotein NlpI; Provisional	99.5
KOG1129	478	consensus TPR repeat-containing protein [General f	99.5
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.49
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.49
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.47
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.46
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.46
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.45
PLN03218	1060	maturation of RBCL 1; Provisional	99.45
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.45
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.43
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.43
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.42
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.42
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.42
PLN03077	857	Protein ECB2; Provisional	99.42
KOG1125	579	consensus TPR repeat-containing protein [General f	99.41
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.41
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.41
KOG1125	579	consensus TPR repeat-containing protein [General f	99.4
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.4
KOG4341	483	consensus F-box protein containing LRR [General fu	99.39
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.38
PLN03077	857	Protein ECB2; Provisional	99.37
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.37
KOG4341	483	consensus F-box protein containing LRR [General fu	99.37
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.37
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.34
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.32
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.3
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.29
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.29
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.28
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.27
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.25
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.24
KOG2300	629	consensus Uncharacterized conserved protein [Funct	99.23
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.23
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.21
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.18
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.16
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.15
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.15
PLN02789	320	farnesyltranstransferase	99.13
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.13
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.12
PLN02789	320	farnesyltranstransferase	99.09
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.08
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.08
KOG2300	629	consensus Uncharacterized conserved protein [Funct	99.02
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.98
PRK15359	144	type III secretion system chaperone protein SscB;	98.98
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.97
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.94
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.94
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.94
PRK15359	144	type III secretion system chaperone protein SscB;	98.92
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.9
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.89
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.88
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.88
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.86
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.85
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.85
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.84
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.84
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	98.83
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.82
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.81
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.81
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	98.79
KOG1585	308	consensus Protein required for fusion of vesicles	98.78
KOG1586	288	consensus Protein required for fusion of vesicles	98.78
KOG0553	304	consensus TPR repeat-containing protein [General f	98.77
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.76
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.75
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.75
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.75
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.74
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.74
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.74
KOG1585	308	consensus Protein required for fusion of vesicles	98.73
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.71
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.71
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.7
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.7
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.7
KOG0553	304	consensus TPR repeat-containing protein [General f	98.69
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.67
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.66
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.57
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.55
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.55
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.51
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.51
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.49
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.48
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.48
KOG1586	288	consensus Protein required for fusion of vesicles	98.48
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.45
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.44
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.42
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.4
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.39
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.39
KOG2471	696	consensus TPR repeat-containing protein [General f	98.37
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.37
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.36
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.35
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.35
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.32
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.31
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.28
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.28
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.26
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.26
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.26
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.25
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.25
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.23
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.23
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.21
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	98.18
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.18
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.17
PRK10803	263	tol-pal system protein YbgF; Provisional	98.16
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.16
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.15
PF12688	120	TPR_5: Tetratrico peptide repeat	98.15
KOG4234	271	consensus TPR repeat-containing protein [General f	98.14
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.13
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.12
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.12
KOG2471	696	consensus TPR repeat-containing protein [General f	98.11
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.1
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	98.09
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.09
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.08
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.07
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.05
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.04
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.04
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.04
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.03
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.0
PF12688	120	TPR_5: Tetratrico peptide repeat	97.98
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.92
PRK15331	165	chaperone protein SicA; Provisional	97.9
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.9
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.89
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.89
PRK10803	263	tol-pal system protein YbgF; Provisional	97.89
KOG4555	175	consensus TPR repeat-containing protein [Function	97.87
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.85
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.85
PLN03150	623	hypothetical protein; Provisional	97.82
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.8
KOG4555	175	consensus TPR repeat-containing protein [Function	97.8
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	97.79
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.77
COG5159	421	RPN6 26S proteasome regulatory complex component [	97.76
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.71
PLN03150	623	hypothetical protein; Provisional	97.69
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.68
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	97.68
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.67
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.67
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	97.67
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.66
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.63
PRK15331	165	chaperone protein SicA; Provisional	97.62
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.6
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.58
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.57
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.57
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.57
PF13512	142	TPR_18: Tetratricopeptide repeat	97.57
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.56
PRK11906	458	transcriptional regulator; Provisional	97.54
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.54
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.54
KOG1463	411	consensus 26S proteasome regulatory complex, subun	97.53
PRK11906	458	transcriptional regulator; Provisional	97.53
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.52
KOG4234	271	consensus TPR repeat-containing protein [General f	97.51
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.51
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.48
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.45
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.43
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.43
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.42
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.4
PF13512	142	TPR_18: Tetratricopeptide repeat	97.38
PF13371	73	TPR_9: Tetratricopeptide repeat	97.38
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.34
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.34
COG5159	421	RPN6 26S proteasome regulatory complex component [	97.33
KOG1463	411	consensus 26S proteasome regulatory complex, subun	97.33
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.31
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.29
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.26
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	97.25
PF13371	73	TPR_9: Tetratricopeptide repeat	97.22
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.2
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.17
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.16
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.15
KOG3783	546	consensus Uncharacterized conserved protein [Funct	97.14
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.12
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.11
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.08
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.08
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.06
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.04
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.01
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	96.98
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.98
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	96.95
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.93
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.91
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.9
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	96.89
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.88
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.87
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.86
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.82
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	96.82
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.82
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.77
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	96.71
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	96.71
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.7
KOG3783	546	consensus Uncharacterized conserved protein [Funct	96.68
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	96.65
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.65
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.62
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.59
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.57
KOG4322	482	consensus Anaphase-promoting complex (APC), subuni	96.57
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.57
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.54
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.5
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.49
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	96.43
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.37
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.34
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	96.29
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.26
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.25
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.23
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	96.21
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	96.16
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	96.08
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.03
PRK15386	426	type III secretion protein GogB; Provisional	96.0
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	95.92
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	95.82
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.8
PRK15386	426	type III secretion protein GogB; Provisional	95.76
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	95.75
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	95.75
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	95.67
PF13428	44	TPR_14: Tetratricopeptide repeat	95.63
PF13428	44	TPR_14: Tetratricopeptide repeat	95.61
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	95.61
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	95.58
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.57
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	95.56
PF13431	34	TPR_17: Tetratricopeptide repeat	95.52
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	95.5
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.44
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.37
KOG4507	886	consensus Uncharacterized conserved protein, conta	95.37
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	95.29
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.28
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.26
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.26
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.19
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	95.17
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	95.15
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.09
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	95.01
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	94.89
PF13431	34	TPR_17: Tetratricopeptide repeat	94.86
KOG3735	353	consensus Tropomodulin and leiomodulin [Cytoskelet	94.57
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	94.46
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.45
KOG4014	248	consensus Uncharacterized conserved protein (conta	94.41
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	94.34
KOG4322	482	consensus Anaphase-promoting complex (APC), subuni	94.33
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.15
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	94.03
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.99
KOG4014	248	consensus Uncharacterized conserved protein (conta	93.96
COG5187	412	RPN7 26S proteasome regulatory complex component,	93.91
KOG4814	872	consensus Uncharacterized conserved protein [Funct	93.85
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	93.82
KOG2581	493	consensus 26S proteasome regulatory complex, subun	93.74
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	93.61
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	93.6
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	93.56
KOG3735	353	consensus Tropomodulin and leiomodulin [Cytoskelet	93.5
KOG0687	393	consensus 26S proteasome regulatory complex, subun	93.04
KOG0687	393	consensus 26S proteasome regulatory complex, subun	92.94
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	92.83
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	92.65
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	92.33
KOG2581	493	consensus 26S proteasome regulatory complex, subun	92.17
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	92.16
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	92.05
COG5187	412	RPN7 26S proteasome regulatory complex component,	92.0
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	91.93
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	91.82
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	91.8
PF08626	1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	91.75
KOG1497	399	consensus COP9 signalosome, subunit CSN4 [Posttran	91.55
COG3118	304	Thioredoxin domain-containing protein [Posttransla	91.32
KOG4814	872	consensus Uncharacterized conserved protein [Funct	91.06
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	90.86
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	90.49
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	89.79
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	89.37
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	89.17
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	89.16
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	88.96
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	88.82
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	88.82
PF08626	1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	88.73
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	88.49
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	88.43
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	88.36
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	88.21
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	87.69
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	87.69
KOG4507	886	consensus Uncharacterized conserved protein, conta	87.33
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	87.14
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	86.83
COG3118	304	Thioredoxin domain-containing protein [Posttransla	86.7
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	86.67
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	86.52
smart00101	244	14_3_3 14-3-3 homologues. 14-3-3 homologues mediat	86.49
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	86.39
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	86.35
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	85.91
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	85.82
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	85.22
COG3014	449	Uncharacterized protein conserved in bacteria [Fun	85.21
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	85.16
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	84.74
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	84.45
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	84.33
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	84.04
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	83.69
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	82.48
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	81.74
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	81.68
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	81.67
PRK10941	269	hypothetical protein; Provisional	81.53
PF05053	618	Menin: Menin; InterPro: IPR007747 MEN1, the gene r	81.32
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	81.07
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	80.89
cd09034	345	BRO1_Alix_like Protein-interacting Bro1-like domai	80.65
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	80.14

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-34  Score=316.19  Aligned_cols=358  Identities=20%  Similarity=0.239  Sum_probs=181.0

Q ss_pred             hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh
Q 000742            5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF   84 (1313)
Q Consensus         5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~   84 (1313)
                      .|+++.|+..|+.+++.+|...++  |.++|.++...|+.+.|...|.+|+++.      ++..-+...+|..+..+|+.
T Consensus       129 rg~~~~al~~y~~aiel~p~fida--~inla~al~~~~~~~~a~~~~~~alqln------P~l~ca~s~lgnLlka~Grl  200 (966)
T KOG4626|consen  129 RGQLQDALALYRAAIELKPKFIDA--YINLAAALVTQGDLELAVQCFFEALQLN------PDLYCARSDLGNLLKAEGRL  200 (966)
T ss_pred             hchHHHHHHHHHHHHhcCchhhHH--HhhHHHHHHhcCCCcccHHHHHHHHhcC------cchhhhhcchhHHHHhhccc
Confidence            344455555555555555444444  4455555555555555555555554444      22244444455555555555


Q ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHH
Q 000742           85 KDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKE  164 (1313)
Q Consensus        85 ~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~  164 (1313)
                      .+|...| .+|++..|..      +.+|.++|-++...        |+...|+++|++|+++               .|.
T Consensus       201 ~ea~~cY-lkAi~~qp~f------AiawsnLg~~f~~~--------Gei~~aiq~y~eAvkl---------------dP~  250 (966)
T KOG4626|consen  201 EEAKACY-LKAIETQPCF------AIAWSNLGCVFNAQ--------GEIWLAIQHYEEAVKL---------------DPN  250 (966)
T ss_pred             chhHHHH-HHHHhhCCce------eeeehhcchHHhhc--------chHHHHHHHHHHhhcC---------------CCc
Confidence            5555555 5555444322      23445555555444        5555555555555544               334


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhch
Q 000742          165 YIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEH  244 (1313)
Q Consensus       165 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~  244 (1313)
                      ++.+|.++|.+|...+.|++|+..|.+|+.+         .+..+.++-++|.+|+.+|..+-|+..|++|+++.+    
T Consensus       251 f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l---------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P----  317 (966)
T KOG4626|consen  251 FLDAYINLGNVYKEARIFDRAVSCYLRALNL---------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP----  317 (966)
T ss_pred             chHHHhhHHHHHHHHhcchHHHHHHHHHHhc---------CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCC----
Confidence            4555555555555555555555555555544         333445555555555555555555555555555533    


Q ss_pred             hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742          245 CQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMI  324 (1313)
Q Consensus       245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~  324 (1313)
                        ....+|.++|.++...|+..+|..+|.+|+.+.+...+....++.+|...|.+..|...|.++.+..+..        
T Consensus       318 --~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~--------  387 (966)
T KOG4626|consen  318 --NFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEF--------  387 (966)
T ss_pred             --CchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhh--------
Confidence              4445555555555555555555555555555555444433333333333333333333333322211111        


Q ss_pred             HhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHH
Q 000742          325 IAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYT  404 (1313)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~  404 (1313)
                                     +....+|+..|...+++++|+..|++++.|.      |..+++|.++|..|..+|+.+.|+..|.
T Consensus       388 ---------------aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~------P~fAda~~NmGnt~ke~g~v~~A~q~y~  446 (966)
T KOG4626|consen  388 ---------------AAAHNNLASIYKQQGNLDDAIMCYKEALRIK------PTFADALSNMGNTYKEMGDVSAAIQCYT  446 (966)
T ss_pred             ---------------hhhhhhHHHHHHhcccHHHHHHHHHHHHhcC------chHHHHHHhcchHHHHhhhHHHHHHHHH
Confidence                           1224555666666666666666666665543      3344666666666666666666666666


Q ss_pred             HHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000742          405 KSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIA  450 (1313)
Q Consensus       405 kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~  450 (1313)
                      +|+.+.+      ..+.++.++|.+|...|+..+|+..|++|+++.
T Consensus       447 rAI~~nP------t~AeAhsNLasi~kDsGni~~AI~sY~~aLklk  486 (966)
T KOG4626|consen  447 RAIQINP------TFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK  486 (966)
T ss_pred             HHHhcCc------HHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence            6665533      445556666666666666666666666666553

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-34  Score=316.02  Aligned_cols=389  Identities=20%  Similarity=0.205  Sum_probs=334.2

Q ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHH
Q 000742            8 MSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDA   87 (1313)
Q Consensus         8 ~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A   87 (1313)
                      ++.....-..+++..+...++  |-++|+++..+|++++|+.+|+.++++.++.      +++|.++|.++...|+.+.|
T Consensus        98 ~d~s~a~~~~a~r~~~q~ae~--ysn~aN~~kerg~~~~al~~y~~aiel~p~f------ida~inla~al~~~~~~~~a  169 (966)
T KOG4626|consen   98 LDKSSAGSLLAIRKNPQGAEA--YSNLANILKERGQLQDALALYRAAIELKPKF------IDAYINLAAALVTQGDLELA  169 (966)
T ss_pred             hhhhhhhhhhhhhccchHHHH--HHHHHHHHHHhchHHHHHHHHHHHHhcCchh------hHHHhhHHHHHHhcCCCccc
Confidence            444444444555666665444  9999999999999999999999999988554      89999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHH
Q 000742           88 LIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYID  167 (1313)
Q Consensus        88 ~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~  167 (1313)
                      ...| .+|+++.|..-      -+...+|..+..+        |+.++|...|.+|++.               .|.++.
T Consensus       170 ~~~~-~~alqlnP~l~------ca~s~lgnLlka~--------Grl~ea~~cYlkAi~~---------------qp~fAi  219 (966)
T KOG4626|consen  170 VQCF-FEALQLNPDLY------CARSDLGNLLKAE--------GRLEEAKACYLKAIET---------------QPCFAI  219 (966)
T ss_pred             HHHH-HHHHhcCcchh------hhhcchhHHHHhh--------cccchhHHHHHHHHhh---------------CCceee
Confidence            9999 99999987653      3567889998877        9999999999999988               457789


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhh
Q 000742          168 AHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQG  247 (1313)
Q Consensus       168 ~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~  247 (1313)
                      +|.++|-++..+|+...|+.+|++|+++         +|....+|.+||.+|...+.|++|+..|.+|+.+.+      .
T Consensus       220 awsnLg~~f~~~Gei~~aiq~y~eAvkl---------dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp------n  284 (966)
T KOG4626|consen  220 AWSNLGCVFNAQGEIWLAIQHYEEAVKL---------DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP------N  284 (966)
T ss_pred             eehhcchHHhhcchHHHHHHHHHHhhcC---------CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC------c
Confidence            9999999999999999999999999998         566788999999999999999999999999999866      8


Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000742          248 EAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAK  327 (1313)
Q Consensus       248 ~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~  327 (1313)
                      .+.++-++|.+|+.+|..+-|+..|++|+++.|.+.+.+..++.++-.+|.+.+|...|.++..+.+..           
T Consensus       285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h-----------  353 (966)
T KOG4626|consen  285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNH-----------  353 (966)
T ss_pred             chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCcc-----------
Confidence            899999999999999999999999999999999999988878888888888888888888776433332           


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 000742          328 GTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSW  407 (1313)
Q Consensus       328 ~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal  407 (1313)
                                  +.++.+||.++.+++.++.|..+|++++++..      ..+.++.+||.+|.++|++++|+.+|++|+
T Consensus       354 ------------adam~NLgni~~E~~~~e~A~~ly~~al~v~p------~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal  415 (966)
T KOG4626|consen  354 ------------ADAMNNLGNIYREQGKIEEATRLYLKALEVFP------EFAAAHNNLASIYKQQGNLDDAIMCYKEAL  415 (966)
T ss_pred             ------------HHHHHHHHHHHHHhccchHHHHHHHHHHhhCh------hhhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence                        34488999999999999999999999998774      455999999999999999999999999999


Q ss_pred             HHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhHHHHHHhhcCHHHHHHHHHHH
Q 000742          408 EMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEARRLQHEI  487 (1313)
Q Consensus       408 ~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~~L~~~~~~~~~~~~~a~~~~e~~  487 (1313)
                      .+.+      .-+.++.++|.+|..+|+...|+.+|.+|+.+.      +..+.|+.+|+.+|... ++..+|..-++..
T Consensus       416 rI~P------~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n------Pt~AeAhsNLasi~kDs-Gni~~AI~sY~~a  482 (966)
T KOG4626|consen  416 RIKP------TFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN------PTFAEAHSNLASIYKDS-GNIPEAIQSYRTA  482 (966)
T ss_pred             hcCc------hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC------cHHHHHHhhHHHHhhcc-CCcHHHHHHHHHH
Confidence            8865      667889999999999999999999999999874      34778999999988544 4444444444443


Q ss_pred             HHHH
Q 000742          488 DKLK  491 (1313)
Q Consensus       488 ~~l~  491 (1313)
                      .+++
T Consensus       483 Lklk  486 (966)
T KOG4626|consen  483 LKLK  486 (966)
T ss_pred             HccC
Confidence            3343

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.95  E-value=1.9e-29  Score=335.68  Aligned_cols=204  Identities=17%  Similarity=0.086  Sum_probs=111.2

Q ss_pred             cccEEEccCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHH
Q 000742         1059 ESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKA 1138 (1313)
Q Consensus      1059 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~ 1138 (1313)
                      +|+.|++++|.+++.    ++..+..+++|+.|+|++|.+++..+..+..+     ..|+.|+|++|.++..    ++..
T Consensus       381 ~L~~L~l~~n~l~~~----~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~----~~~~  447 (968)
T PLN00113        381 NLFKLILFSNSLEGE----IPKSLGACRSLRRVRLQDNSFSGELPSEFTKL-----PLVYFLDISNNNLQGR----INSR  447 (968)
T ss_pred             CCCEEECcCCEeccc----CCHHHhCCCCCCEEECcCCEeeeECChhHhcC-----CCCCEEECcCCcccCc----cChh
Confidence            344444444444433    23334444555555555555544333333221     1255555555555432    3333


Q ss_pred             hhcCCCccEEEccCCCCChhhh-hhhcccccccCCcccccccccccccccccccccccccCCCCcccccccCCccchhhh
Q 000742         1139 LSENDTLEELNLADNASKELTL-QQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVES 1217 (1313)
Q Consensus      1139 l~~~~~L~~L~Ls~N~i~~~~~-~~~l~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 1217 (1313)
                      +..+++|+.|+|++|.+.+... .....+|+.+++++|.++..            ....+.++++|+.|+|++|.+++..
T Consensus       448 ~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~------------~~~~~~~l~~L~~L~Ls~N~l~~~~  515 (968)
T PLN00113        448 KWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGA------------VPRKLGSLSELMQLKLSENKLSGEI  515 (968)
T ss_pred             hccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCc------------cChhhhhhhccCEEECcCCcceeeC
Confidence            4445555555555555443211 01113444555555555431            1234566777888888888887765


Q ss_pred             ccccCCCCcccccccCCccchhhHHHHHHHHhccccCceecCCCCCCCHHHHHHHHHHHhcCCCCCcccccccc
Q 000742         1218 AASGFDNSCTSSCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFSTQAVKTLYCAWSSRSGAGPAWKHIKE 1291 (1313)
Q Consensus      1218 ~~~~~~~~~~~~L~~L~Ls~n~l~~~l~~~l~~~~~L~~LdLs~N~l~~~~~~~l~~~l~~~~~~~~~~~~i~~ 1291 (1313)
                      |.   ......+|+.|+|++|.+++.+|..+..+++|+.|||++|.+++..+..+.. +..-..++++.|.+.+
T Consensus       516 p~---~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        516 PD---ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGN-VESLVQVNISHNHLHG  585 (968)
T ss_pred             Ch---HHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhc-CcccCEEeccCCccee
Confidence            53   1223357888888888888888888888888888888888888777666543 2221336666666654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.95  E-value=3e-29  Score=333.85  Aligned_cols=394  Identities=18%  Similarity=0.127  Sum_probs=256.8

Q ss_pred             CCeEEecCCCCCcCCHHHHHHHhhcCCCcCEEEecCCCCCHHHHHHHHHHHHhcccCccceEEEccCCCCCHHHHHHHHh
Q 000742          832 EDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICE  911 (1313)
Q Consensus       832 ~~~l~l~~~~l~~~~~~~l~~~L~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~~~~l~~L~Ls~n~l~~~~~~~l~~  911 (1313)
                      ++.|+|++|.+....    ...+...++|++|+|++|.+.......+..       ..+|+.|+|++|+++...+..+..
T Consensus       166 L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-------l~~L~~L~L~~n~l~~~~p~~l~~  234 (968)
T PLN00113        166 LKVLDLGGNVLVGKI----PNSLTNLTSLEFLTLASNQLVGQIPRELGQ-------MKSLKWIYLGYNNLSGEIPYEIGG  234 (968)
T ss_pred             CCEEECccCcccccC----ChhhhhCcCCCeeeccCCCCcCcCChHHcC-------cCCccEEECcCCccCCcCChhHhc
Confidence            344777777664432    223344467777777777665433333322       345667777777776555555544


Q ss_pred             cccCCCCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhH
Q 000742          912 CPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAI  991 (1313)
Q Consensus       912 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  991 (1313)
                      +    ++|++|+|++|.++..    ++..+..+++|++|+|++|.+++    .++..+..+++|++|+|++|.+ .+.  
T Consensus       235 l----~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l-~~~--  299 (968)
T PLN00113        235 L----TSLNHLDLVYNNLTGP----IPSSLGNLKNLQYLFLYQNKLSG----PIPPSIFSLQKLISLDLSDNSL-SGE--  299 (968)
T ss_pred             C----CCCCEEECcCceeccc----cChhHhCCCCCCEEECcCCeeec----cCchhHhhccCcCEEECcCCee-ccC--
Confidence            3    6777777777776654    55666677777777777777654    3344455667777777777763 222  


Q ss_pred             HHHHHhhccCCccceeecCCCCCChHHHHHHHHHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCC
Q 000742          992 TNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLE 1071 (1313)
Q Consensus       992 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 1071 (1313)
                        ++..+..+++|+.|++++|.+++..+..+..   .++|+.|+|++|.+.....    ..+ ...++|+.|+|++|.++
T Consensus       300 --~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~---l~~L~~L~L~~n~l~~~~p----~~l-~~~~~L~~L~Ls~n~l~  369 (968)
T PLN00113        300 --IPELVIQLQNLEILHLFSNNFTGKIPVALTS---LPRLQVLQLWSNKFSGEIP----KNL-GKHNNLTVLDLSTNNLT  369 (968)
T ss_pred             --CChhHcCCCCCcEEECCCCccCCcCChhHhc---CCCCCEEECcCCCCcCcCC----hHH-hCCCCCcEEECCCCeeE
Confidence              3444556777777777777776655544433   3557777777777654322    122 23456777777777776


Q ss_pred             hhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEcc
Q 000742         1072 STCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLA 1151 (1313)
Q Consensus      1072 ~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls 1151 (1313)
                      +.    ++..+...++|+.|++++|.+.+..+..+...     .+|+.|+|++|.++..    ++..+..+++|+.|+|+
T Consensus       370 ~~----~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~-----~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls  436 (968)
T PLN00113        370 GE----IPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC-----RSLRRVRLQDNSFSGE----LPSEFTKLPLVYFLDIS  436 (968)
T ss_pred             ee----CChhHhCcCCCCEEECcCCEecccCCHHHhCC-----CCCCEEECcCCEeeeE----CChhHhcCCCCCEEECc
Confidence            55    34455566777777777777766555555432     2488888888887744    56667778888888888


Q ss_pred             CCCCChhhhh--hhcccccccCCcccccccccccccccccccccccccCCCCcccccccCCccchhhhccccCCCCcccc
Q 000742         1152 DNASKELTLQ--QNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFDNSCTSS 1229 (1313)
Q Consensus      1152 ~N~i~~~~~~--~~l~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~ 1229 (1313)
                      +|.+.+....  ..+.+|+.++|++|.+.....            . ...+++|+.|+|++|.+++..+.   ......+
T Consensus       437 ~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p------------~-~~~~~~L~~L~ls~n~l~~~~~~---~~~~l~~  500 (968)
T PLN00113        437 NNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP------------D-SFGSKRLENLDLSRNQFSGAVPR---KLGSLSE  500 (968)
T ss_pred             CCcccCccChhhccCCCCcEEECcCceeeeecC------------c-ccccccceEEECcCCccCCccCh---hhhhhhc
Confidence            8887765221  123667777888887654211            1 22357899999999999887553   2223468


Q ss_pred             cccCCccchhhHHHHHHHHhccccCceecCCCCCCCHHHHHHHHHHHhcCCCCCcccccccc
Q 000742         1230 CQKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFSTQAVKTLYCAWSSRSGAGPAWKHIKE 1291 (1313)
Q Consensus      1230 L~~L~Ls~n~l~~~l~~~l~~~~~L~~LdLs~N~l~~~~~~~l~~~l~~~~~~~~~~~~i~~ 1291 (1313)
                      |+.|+|++|++.+.+|..+..+++|+.|+|++|.+++..+..+... ..-..++++.|.+.+
T Consensus       501 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~  561 (968)
T PLN00113        501 LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM-PVLSQLDLSQNQLSG  561 (968)
T ss_pred             cCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCc-ccCCEEECCCCcccc
Confidence            9999999999999999999999999999999999999888777543 222346777776654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.95  E-value=3.2e-25  Score=278.22  Aligned_cols=382  Identities=15%  Similarity=0.095  Sum_probs=287.2

Q ss_pred             hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh
Q 000742            5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF   84 (1313)
Q Consensus         5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~   84 (1313)
                      .|+|++|+..|+++++..|..   ..|.++|.+|...|++++|++.+++++++.+      ....+++.+|.+|..+|+|
T Consensus       140 ~~~~~~Ai~~y~~al~~~p~~---~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p------~~~~a~~~~a~a~~~lg~~  210 (615)
T TIGR00990       140 NKDFNKAIKLYSKAIECKPDP---VYYSNRAACHNALGDWEKVVEDTTAALELDP------DYSKALNRRANAYDGLGKY  210 (615)
T ss_pred             cCCHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHcCCH
Confidence            588999999999999998862   3588999999999999999999999998863      3378999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHH------------------------HHHHHHHHHHHH-------------------
Q 000742           85 KDALIYQVKKHLELAKDASDLVEQQ------------------------RACTQLGRTYYE-------------------  121 (1313)
Q Consensus        85 ~~A~~~~~~kal~l~~~~~~~~~~a------------------------~a~~~lg~~y~~-------------------  121 (1313)
                      ++|+..+ .++..+.+.........                        .++..++..+..                   
T Consensus       211 ~eA~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (615)
T TIGR00990       211 ADALLDL-TASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEE  289 (615)
T ss_pred             HHHHHHH-HHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccc
Confidence            9999988 76654321110000000                        000111221110                   


Q ss_pred             -------Hhc--cCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000742          122 -------MFL--RSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRG  192 (1313)
Q Consensus       122 -------l~~--~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~a  192 (1313)
                             ++.  ......+.|++|+.+|+++++..            ...|..+.++..+|.+|..+|++++|+..|+++
T Consensus       290 ~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~------------~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka  357 (615)
T TIGR00990       290 TGNGQLQLGLKSPESKADESYEEAARAFEKALDLG------------KLGEKEAIALNLRGTFKCLKGKHLEALADLSKS  357 (615)
T ss_pred             cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC------------CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                   000  00001146777777777777652            113577889999999999999999999999999


Q ss_pred             HhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHH
Q 000742          193 LEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCY  272 (1313)
Q Consensus       193 l~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  272 (1313)
                      +++.         +....+|..+|.+|...|++++|+.+|++++++.+      ....+++.+|.+|+..|++++|+.+|
T Consensus       358 l~l~---------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~  422 (615)
T TIGR00990       358 IELD---------PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS------EDPDIYYHRAQLHFIKGEFAQAGKDY  422 (615)
T ss_pred             HHcC---------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9983         33567899999999999999999999999998855      66789999999999999999999999


Q ss_pred             HHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHH
Q 000742          273 QKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSM  352 (1313)
Q Consensus       273 ~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~  352 (1313)
                      ++++++.|........++.++..+|++.+|+..++++....+..                       ...+..+|..+..
T Consensus       423 ~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~-----------------------~~~~~~lg~~~~~  479 (615)
T TIGR00990       423 QKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA-----------------------PDVYNYYGELLLD  479 (615)
T ss_pred             HHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----------------------hHHHHHHHHHHHH
Confidence            99999998766655666667777777777777777665322211                       1225667888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCchhh-HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Q 000742          353 IFAWLKHCEYAKRKKRIASELCDKGKL-SDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLD  431 (1313)
Q Consensus       353 ~~~~~~A~~~~~~a~~i~~~~~~~~~~-a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~  431 (1313)
                      .++|++|++++++++.+.......... ...+...+..|...|++++|+.+|++++++.+      ....++..+|.+|.
T Consensus       480 ~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p------~~~~a~~~la~~~~  553 (615)
T TIGR00990       480 QNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP------ECDIAVATMAQLLL  553 (615)
T ss_pred             ccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHH
Confidence            999999999999999886543222111 22233333444557999999999999998743      44557899999999


Q ss_pred             HcCCHHHHHHHHHHHHHHHHH
Q 000742          432 SNGDWAGALDAFQEGYRIAVE  452 (1313)
Q Consensus       432 ~~g~~~~A~~~~~kAl~i~~~  452 (1313)
                      .+|++++|+.+|++|+++.+.
T Consensus       554 ~~g~~~eAi~~~e~A~~l~~~  574 (615)
T TIGR00990       554 QQGDVDEALKLFERAAELART  574 (615)
T ss_pred             HccCHHHHHHHHHHHHHHhcc
Confidence            999999999999999999765

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.93  E-value=6.3e-25  Score=232.16  Aligned_cols=345  Identities=19%  Similarity=0.236  Sum_probs=245.9

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 000742           33 VIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRAC  112 (1313)
Q Consensus        33 ~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~  112 (1313)
                      .-|.-+++.|++...+.+|+.|++.-..  +-..+..+|..+|.+|+.+++|++|++|- .--+-+++..++....+++.
T Consensus        22 lEGERLck~gdcraGv~ff~aA~qvGTe--Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH-~hDltlar~lgdklGEAKss   98 (639)
T KOG1130|consen   22 LEGERLCKMGDCRAGVDFFKAALQVGTE--DLSTLSAIYSQLGNAYFYLKDYEKALKYH-THDLTLARLLGDKLGEAKSS   98 (639)
T ss_pred             HHHHHHHhccchhhhHHHHHHHHHhcch--HHHHHHHHHHHhcchhhhHhhHHHHHhhh-hhhHHHHHHhcchhcccccc
Confidence            4477788899999999999999887532  22234678889999999999999999998 88888888888888888889


Q ss_pred             HHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000742          113 TQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRG  192 (1313)
Q Consensus       113 ~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~a  192 (1313)
                      -++|.++..+        |.|++|+.+..+-+.+++++++..         ....+++++|.+|...|+--.-..--++ 
T Consensus        99 gNLGNtlKv~--------G~fdeA~~cc~rhLd~areLgDrv---------~e~RAlYNlgnvYhakGk~~g~~~pee~-  160 (639)
T KOG1130|consen   99 GNLGNTLKVK--------GAFDEALTCCFRHLDFARELGDRV---------LESRALYNLGNVYHAKGKCTGLEAPEEK-  160 (639)
T ss_pred             ccccchhhhh--------cccchHHHHHHHHhHHHHHHhHHH---------hhhHHHhhhhhhhhhcccccCCCChhhc-
Confidence            9999998877        999999999999999998888865         4578899999999887752110000000 


Q ss_pred             HhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHH
Q 000742          193 LEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCY  272 (1313)
Q Consensus       193 l~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  272 (1313)
                               +.....             ....++.|.++|+.-+++.++.++.....++|-+||..|+-+|+|++|+.+-
T Consensus       161 ---------g~f~~e-------------v~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H  218 (639)
T KOG1130|consen  161 ---------GAFNAE-------------VTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFH  218 (639)
T ss_pred             ---------ccccHH-------------HHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHH
Confidence                     000000             0112344455555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHH
Q 000742          273 QKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSM  352 (1313)
Q Consensus       273 ~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~  352 (1313)
                      +.-+.+.++.++...... +                                                  +.++|..+..
T Consensus       219 ~~RL~ia~efGDrAaeRR-A--------------------------------------------------~sNlgN~hif  247 (639)
T KOG1130|consen  219 KLRLEIAQEFGDRAAERR-A--------------------------------------------------HSNLGNCHIF  247 (639)
T ss_pred             HHHHHHHHHhhhHHHHHH-h--------------------------------------------------hcccchhhhh
Confidence            555555555444321111 1                                                  2233333334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Q 000742          353 IFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDS  432 (1313)
Q Consensus       353 ~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~  432 (1313)
                      .++++.|+++|+.++.++.++++....+...+.+|..|.-..++++||.|+++-++|++++.+..++..+++.+|.+|..
T Consensus       248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a  327 (639)
T KOG1130|consen  248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA  327 (639)
T ss_pred             hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            44444555555555555555566666678888999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhHHHHH
Q 000742          433 NGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHM  471 (1313)
Q Consensus       433 ~g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~~L~~~~~  471 (1313)
                      .|..++|+.+.++++++..+.+++..+..+-.++....+
T Consensus       328 lg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~  366 (639)
T KOG1130|consen  328 LGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLIL  366 (639)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHH
Confidence            999999999999999999999999988888777775443

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.93  E-value=3.3e-24  Score=226.70  Aligned_cols=329  Identities=21%  Similarity=0.250  Sum_probs=252.8

Q ss_pred             hhhHHHHHHHHHHHHHhcCcH--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHcc
Q 000742            5 EMQMSEAKRAYRSAKEEGNRQ--EEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLE   82 (1313)
Q Consensus         5 ~~~~~~A~~~l~~a~~~~~~~--~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g   82 (1313)
                      .|+....+..|+.|++.+...  ....+|.++|++|+..++|++|++|..--+-+.....+....+.+.-++|..+..+|
T Consensus        30 ~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G  109 (639)
T KOG1130|consen   30 MGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKG  109 (639)
T ss_pred             ccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhc
Confidence            356777888999999987653  344678899999999999999999999999998888888888999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcc------------CCcchhhHHHHHHHHHHHHHHHHHh
Q 000742           83 HFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLR------------SDDDHYSIRNAKKYFKSAMKLAQTL  150 (1313)
Q Consensus        83 ~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~------------~~~~~~~~~~A~~~~~~Al~l~~~~  150 (1313)
                      .|++|+.+. .+.+.+++..+|....++++|++|.+|...+..            ..+....++.|.++|..-+++.+++
T Consensus       110 ~fdeA~~cc-~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~l  188 (639)
T KOG1130|consen  110 AFDEALTCC-FRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKL  188 (639)
T ss_pred             ccchHHHHH-HHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999 999999999999999999999999999976311            1112234556666666666666666


Q ss_pred             ccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHH
Q 000742          151 KENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSRE  230 (1313)
Q Consensus       151 ~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~  230 (1313)
                      ++.-         ....+|.++|..|+-+|+|++|+.+.+.-+.++++.   ++....-+++.++|++|.-+|+++.|++
T Consensus       189 gDr~---------aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef---GDrAaeRRA~sNlgN~hiflg~fe~A~e  256 (639)
T KOG1130|consen  189 GDRL---------AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF---GDRAAERRAHSNLGNCHIFLGNFELAIE  256 (639)
T ss_pred             hhHH---------hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh---hhHHHHHHhhcccchhhhhhcccHhHHH
Confidence            5543         334566667777777777777777666666666665   5555566666677777777777777777


Q ss_pred             HHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHH
Q 000742          231 HIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELK  310 (1313)
Q Consensus       231 ~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~  310 (1313)
                      +|++++.++.+.++....+...|.||..|.-.+++++|+.|+.+-+.++++                             
T Consensus       257 hYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqe-----------------------------  307 (639)
T KOG1130|consen  257 HYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQE-----------------------------  307 (639)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------
Confidence            777776666666666666666666666666666666666666666665544                             


Q ss_pred             HHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHH
Q 000742          311 KEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESY  390 (1313)
Q Consensus       311 ~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y  390 (1313)
                                                                                    +.+......+++.+|.+|
T Consensus       308 --------------------------------------------------------------L~DriGe~RacwSLgna~  325 (639)
T KOG1130|consen  308 --------------------------------------------------------------LEDRIGELRACWSLGNAF  325 (639)
T ss_pred             --------------------------------------------------------------HHHhhhhHHHHHHHHHHH
Confidence                                                                          334444558889999999


Q ss_pred             HHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHH
Q 000742          391 QKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWA  437 (1313)
Q Consensus       391 ~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~  437 (1313)
                      ...|..++|+.+.++.+++..++.+..+...+..++...-...|..+
T Consensus       326 ~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~d  372 (639)
T KOG1130|consen  326 NALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQED  372 (639)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCc
Confidence            99999999999999999999999998888888888888888777654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.93  E-value=1.8e-23  Score=262.37  Aligned_cols=397  Identities=14%  Similarity=0.096  Sum_probs=295.6

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHH
Q 000742           27 EARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLV  106 (1313)
Q Consensus        27 ~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~  106 (1313)
                      .+..+..+|..|+..|+|++|+..|++++.+.+.       ...|.++|.+|..+|++++|+..+ ++++++.|..    
T Consensus       126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-------~~~~~n~a~~~~~l~~~~~Ai~~~-~~al~l~p~~----  193 (615)
T TIGR00990       126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-------PVYYSNRAACHNALGDWEKVVEDT-TAALELDPDY----  193 (615)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-------hHHHHHHHHHHHHhCCHHHHHHHH-HHHHHcCCCC----
Confidence            3566889999999999999999999999987632       457999999999999999999999 9999987654    


Q ss_pred             HHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHH-----------------------HHh-ccCCCCCc----
Q 000742          107 EQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLA-----------------------QTL-KENPATSR----  158 (1313)
Q Consensus       107 ~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~-----------------------~~~-~~~~~~~~----  158 (1313)
                        ..+++.+|.+|..+        |++++|+..|..+..+.                       ... ...+....    
T Consensus       194 --~~a~~~~a~a~~~l--------g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~  263 (615)
T TIGR00990       194 --SKALNRRANAYDGL--------GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTF  263 (615)
T ss_pred             --HHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHH
Confidence              36899999999988        99999998876553210                       000 00000000    


Q ss_pred             --------------------chhhHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHH
Q 000742          159 --------------------SSFLKEYIDAHNNIGMLQ---MELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNL  215 (1313)
Q Consensus       159 --------------------~~~~p~~~~~~~~la~~y---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l  215 (1313)
                                          ....+.....+..+|..+   ...++|++|+.+|+++++..      ...+..+.++..+
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~------~~~~~~a~a~~~l  337 (615)
T TIGR00990       264 VGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG------KLGEKEAIALNLR  337 (615)
T ss_pred             HHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC------CCChhhHHHHHHH
Confidence                                000111122223333332   22468999999999998863      2246678899999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHh
Q 000742          216 GNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQN  295 (1313)
Q Consensus       216 g~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~  295 (1313)
                      |.+|..+|++++|+.+|++++++.+      ....++..+|.++...|++++|+.+|++++++.|.....+...+.++..
T Consensus       338 g~~~~~~g~~~eA~~~~~kal~l~P------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~  411 (615)
T TIGR00990       338 GTFKCLKGKHLEALADLSKSIELDP------RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI  411 (615)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999865      6778999999999999999999999999999988776666666666777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 000742          296 IETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCD  375 (1313)
Q Consensus       296 lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~  375 (1313)
                      +|++.+|+..|+++....+..                       ...+..++..+...+++++|+.++++++...     
T Consensus       412 ~g~~~~A~~~~~kal~l~P~~-----------------------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-----  463 (615)
T TIGR00990       412 KGEFAQAGKDYQKSIDLDPDF-----------------------IFSHIQLGVTQYKEGSIASSMATFRRCKKNF-----  463 (615)
T ss_pred             cCCHHHHHHHHHHHHHcCccC-----------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----
Confidence            777777777766665322211                       1125567888888999999999999998653     


Q ss_pred             chhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHcC
Q 000742          376 KGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNV-LDSNGDWAGALDAFQEGYRIAVEAN  454 (1313)
Q Consensus       376 ~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~-y~~~g~~~~A~~~~~kAl~i~~~~~  454 (1313)
                       |..+.++..+|.+|..+|++++|+.+|++|+++.+...........+...+.+ |...|++++|..+|++|+++..   
T Consensus       464 -P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p---  539 (615)
T TIGR00990       464 -PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP---  539 (615)
T ss_pred             -CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC---
Confidence             55678999999999999999999999999999876533222222223444444 4457999999999999998731   


Q ss_pred             ChhHHHHHHHhhHHHHHHhhcCHHHHHHHHHHHHHHHhh
Q 000742          455 LPSVQLSALENMHYSHMIRFDNIEEARRLQHEIDKLKES  493 (1313)
Q Consensus       455 ~~~~~~~al~~L~~~~~~~~~~~~~a~~~~e~~~~l~~s  493 (1313)
                         ....++..+|.++.. .++.++|..+.+....+..+
T Consensus       540 ---~~~~a~~~la~~~~~-~g~~~eAi~~~e~A~~l~~~  574 (615)
T TIGR00990       540 ---ECDIAVATMAQLLLQ-QGDVDEALKLFERAAELART  574 (615)
T ss_pred             ---CcHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHhcc
Confidence               123477888988865 55677777777776666554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.93  E-value=1.2e-27  Score=264.29  Aligned_cols=383  Identities=17%  Similarity=0.098  Sum_probs=270.4

Q ss_pred             CeEEecCCCCCcCCHHHHHHHhhcCCCcCEEEecCCCCCHHHHHHHHHHHHhcccCccceEEEccCCCCCHHHHHHHHhc
Q 000742          833 DEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICEC  912 (1313)
Q Consensus       833 ~~l~l~~~~l~~~~~~~l~~~L~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~~~~l~~L~Ls~n~l~~~~~~~l~~~  912 (1313)
                      +.|+|++|.|.+.++..|    ...++|++++|..|.++..  ..+..      ....++.|+|.+|.|+......+.-.
T Consensus        81 ~~LdlsnNkl~~id~~~f----~nl~nLq~v~l~~N~Lt~I--P~f~~------~sghl~~L~L~~N~I~sv~se~L~~l  148 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFF----YNLPNLQEVNLNKNELTRI--PRFGH------ESGHLEKLDLRHNLISSVTSEELSAL  148 (873)
T ss_pred             eeeeccccccccCcHHHH----hcCCcceeeeeccchhhhc--ccccc------cccceeEEeeeccccccccHHHHHhH
Confidence            569999999988876544    3458999999999987641  11111      12347889999999988777777664


Q ss_pred             ccCCCCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHH
Q 000742          913 PVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAIT  992 (1313)
Q Consensus       913 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~  992 (1313)
                          +.|+.||||.|.|+..    --..+..-.+|++|+|++|.|+..+...    |..+.+|.+|.|+.|++.+-.   
T Consensus       149 ----~alrslDLSrN~is~i----~~~sfp~~~ni~~L~La~N~It~l~~~~----F~~lnsL~tlkLsrNrittLp---  213 (873)
T KOG4194|consen  149 ----PALRSLDLSRNLISEI----PKPSFPAKVNIKKLNLASNRITTLETGH----FDSLNSLLTLKLSRNRITTLP---  213 (873)
T ss_pred             ----hhhhhhhhhhchhhcc----cCCCCCCCCCceEEeecccccccccccc----ccccchheeeecccCcccccC---
Confidence                7899999999988864    1223445557999999999998755444    556778999999999842211   


Q ss_pred             HHHHhhccCCccceeecCCCCCChHHHHHHHHHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCCh
Q 000742          993 NLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLES 1072 (1313)
Q Consensus       993 ~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 1072 (1313)
                        ...|+++++|+.|+|..|.|.-...-   .+...++|+.|.|..|.|..     +-++.+..+.++++|+|+.|+++.
T Consensus       214 --~r~Fk~L~~L~~LdLnrN~irive~l---tFqgL~Sl~nlklqrN~I~k-----L~DG~Fy~l~kme~l~L~~N~l~~  283 (873)
T KOG4194|consen  214 --QRSFKRLPKLESLDLNRNRIRIVEGL---TFQGLPSLQNLKLQRNDISK-----LDDGAFYGLEKMEHLNLETNRLQA  283 (873)
T ss_pred             --HHHhhhcchhhhhhccccceeeehhh---hhcCchhhhhhhhhhcCccc-----ccCcceeeecccceeecccchhhh
Confidence              23466789999999999987553222   23445678999999998853     445566777889999999999876


Q ss_pred             hHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEccC
Q 000742         1073 TCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLAD 1152 (1313)
Q Consensus      1073 ~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~ 1152 (1313)
                      ..    ..++.+++.|+.|+||+|.|....+....-     ..+|++|+|++|+|+..    -..+|..+..|++|+|++
T Consensus       284 vn----~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf-----tqkL~~LdLs~N~i~~l----~~~sf~~L~~Le~LnLs~  350 (873)
T KOG4194|consen  284 VN----EGWLFGLTSLEQLDLSYNAIQRIHIDSWSF-----TQKLKELDLSSNRITRL----DEGSFRVLSQLEELNLSH  350 (873)
T ss_pred             hh----cccccccchhhhhccchhhhheeecchhhh-----cccceeEeccccccccC----ChhHHHHHHHhhhhcccc
Confidence            52    234567889999999999887544433221     12599999999998854    345677788899999999


Q ss_pred             CCCChh--hhhhhcccccccCCcccccccccccccccccccccccccCCCCcccccccCCccchhhhccccCCCCccccc
Q 000742         1153 NASKEL--TLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFDNSCTSSC 1230 (1313)
Q Consensus      1153 N~i~~~--~~~~~l~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L 1230 (1313)
                      |.|+..  +....+.+|+.++|++|.++.         |.+.....|.++++|+.|+|.+|+|+.++..   .+.+...|
T Consensus       351 Nsi~~l~e~af~~lssL~~LdLr~N~ls~---------~IEDaa~~f~gl~~LrkL~l~gNqlk~I~kr---Afsgl~~L  418 (873)
T KOG4194|consen  351 NSIDHLAEGAFVGLSSLHKLDLRSNELSW---------CIEDAAVAFNGLPSLRKLRLTGNQLKSIPKR---AFSGLEAL  418 (873)
T ss_pred             cchHHHHhhHHHHhhhhhhhcCcCCeEEE---------EEecchhhhccchhhhheeecCceeeecchh---hhccCccc
Confidence            998765  333334777778888876554         4444455677778888888888888766443   45556678


Q ss_pred             ccCCccchhhHHHHHHHHhccccCceecCCC-CCCCHHHHHHHHHHHhc
Q 000742         1231 QKNSSFECQFVQELSSAIGMAKPLQLLDLSN-NGFSTQAVKTLYCAWSS 1278 (1313)
Q Consensus      1231 ~~L~Ls~n~l~~~l~~~l~~~~~L~~LdLs~-N~l~~~~~~~l~~~l~~ 1278 (1313)
                      +.|+|.+|.|...=|.+|..+ .|++|-+.. +-+-+-...||..=+..
T Consensus       419 E~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~  466 (873)
T KOG4194|consen  419 EHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLYR  466 (873)
T ss_pred             ceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHHHHh
Confidence            888888887776667777777 777777744 44455556666554443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.93  E-value=1.6e-23  Score=242.66  Aligned_cols=291  Identities=25%  Similarity=0.264  Sum_probs=159.2

Q ss_pred             EEecCCCCCcCCHHHHHHHhhcCCCcCEEEecCCCCCHHHHHHHHHHHHhcccCccceEEEccCCCCCHHHHHHHHhccc
Q 000742          835 VIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPV  914 (1313)
Q Consensus       835 l~l~~~~l~~~~~~~l~~~L~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~~~~l~~L~Ls~n~l~~~~~~~l~~~l~  914 (1313)
                      |+|..+.+++..+..++..+   +.|+.|+|++|.+++.++..+...+                               .
T Consensus         3 l~L~~~~l~~~~~~~~~~~l---~~L~~l~l~~~~l~~~~~~~i~~~l-------------------------------~   48 (319)
T cd00116           3 LSLKGELLKTERATELLPKL---LCLQVLRLEGNTLGEEAAKALASAL-------------------------------R   48 (319)
T ss_pred             cccccCcccccchHHHHHHH---hhccEEeecCCCCcHHHHHHHHHHH-------------------------------h
Confidence            56666666655554444443   3466666666666665555555433                               2


Q ss_pred             CCCCcCEEEecCCCCC--hhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHH
Q 000742          915 LFTRLGVLNLSGNRLT--DACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAIT  992 (1313)
Q Consensus       915 ~~~~L~~L~Ls~n~l~--~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~  992 (1313)
                      ..++|++|+++++.++  ..++..++..+..+++|+.|+|++|.+.......+...... ++|++|++++|. +++.+..
T Consensus        49 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~-~~~~~~~  126 (319)
T cd00116          49 PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNG-LGDRGLR  126 (319)
T ss_pred             hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCc-cchHHHH
Confidence            2344444444444444  33344444444444455555555554443333333222222 345555555554 3333333


Q ss_pred             HHHHhhccC-CccceeecCCCCCChHHHHHHHH-HhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCC
Q 000742          993 NLLVKLDTL-KSFSELNLNGLKLSKPVVDRLCQ-LAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGL 1070 (1313)
Q Consensus       993 ~~~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~-l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 1070 (1313)
                      .+...+..+ ++|+.|+|++|.+++.....+.. +..+++|++|+|++|.+++.++..++..+... ++|++|+|++|.+
T Consensus       127 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i  205 (319)
T cd00116         127 LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKAN-CNLEVLDLNNNGL  205 (319)
T ss_pred             HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhC-CCCCEEeccCCcc
Confidence            344444444 45555555555555433333332 22334566666666666655555555544432 5667777777766


Q ss_pred             ChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEc
Q 000742         1071 ESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNL 1150 (1313)
Q Consensus      1071 ~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L 1150 (1313)
                      ++.++..++..+..+++|++|++++|.+++.++..++..+..+...|+.|++++|.|++.|...++..+..+++|+.|++
T Consensus       206 ~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l  285 (319)
T cd00116         206 TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDL  285 (319)
T ss_pred             ChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEEC
Confidence            66666666666666677777777777777666666666554333457777777777776666666666666667777777


Q ss_pred             cCCCCChhhhhh
Q 000742         1151 ADNASKELTLQQ 1162 (1313)
Q Consensus      1151 s~N~i~~~~~~~ 1162 (1313)
                      ++|.+++.+...
T Consensus       286 ~~N~l~~~~~~~  297 (319)
T cd00116         286 RGNKFGEEGAQL  297 (319)
T ss_pred             CCCCCcHHHHHH
Confidence            777777665443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.92  E-value=4.1e-27  Score=259.98  Aligned_cols=355  Identities=21%  Similarity=0.170  Sum_probs=244.5

Q ss_pred             cCCCeEEecCCCCCcCCHHHHHHHhhcCCCcCEEEecCCCCCHHHHHHHHHHHHhcccCccceEEEccCCCCCHHHHHHH
Q 000742          830 EVEDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQI  909 (1313)
Q Consensus       830 ~~~~~l~l~~~~l~~~~~~~l~~~L~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~~~~l~~L~Ls~n~l~~~~~~~l  909 (1313)
                      ..++++.+..|.|+.+     ++.-....+|+.|+|.+|.|+....+.|+.+       +.+++||||.|.|+......+
T Consensus       102 ~nLq~v~l~~N~Lt~I-----P~f~~~sghl~~L~L~~N~I~sv~se~L~~l-------~alrslDLSrN~is~i~~~sf  169 (873)
T KOG4194|consen  102 PNLQEVNLNKNELTRI-----PRFGHESGHLEKLDLRHNLISSVTSEELSAL-------PALRSLDLSRNLISEIPKPSF  169 (873)
T ss_pred             Ccceeeeeccchhhhc-----ccccccccceeEEeeeccccccccHHHHHhH-------hhhhhhhhhhchhhcccCCCC
Confidence            3345588888877654     3333334578999999998877666666652       346888999998877766555


Q ss_pred             HhcccCCCCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChh
Q 000742          910 CECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGN  989 (1313)
Q Consensus       910 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  989 (1313)
                      ...    .+|++|+|++|.|++.+.    ..|..+.+|.+|.|+.|.|+.    .-..+|+++++|+.|+|..|.+-..+
T Consensus       170 p~~----~ni~~L~La~N~It~l~~----~~F~~lnsL~tlkLsrNritt----Lp~r~Fk~L~~L~~LdLnrN~irive  237 (873)
T KOG4194|consen  170 PAK----VNIKKLNLASNRITTLET----GHFDSLNSLLTLKLSRNRITT----LPQRSFKRLPKLESLDLNRNRIRIVE  237 (873)
T ss_pred             CCC----CCceEEeecccccccccc----ccccccchheeeecccCcccc----cCHHHhhhcchhhhhhccccceeeeh
Confidence            543    689999999999887633    345556688899999998885    33345677889999999988841111


Q ss_pred             hHHHHHHhhccCCccceeecCCCCCChHHHHHHHHHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCC
Q 000742          990 AITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCG 1069 (1313)
Q Consensus       990 ~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 1069 (1313)
                           ...|..+++|+.|.|..|++....-..|..   +..+++|+|+.|++..     +.++-..+++.|+.|+||+|.
T Consensus       238 -----~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~---l~kme~l~L~~N~l~~-----vn~g~lfgLt~L~~L~lS~Na  304 (873)
T KOG4194|consen  238 -----GLTFQGLPSLQNLKLQRNDISKLDDGAFYG---LEKMEHLNLETNRLQA-----VNEGWLFGLTSLEQLDLSYNA  304 (873)
T ss_pred             -----hhhhcCchhhhhhhhhhcCcccccCcceee---ecccceeecccchhhh-----hhcccccccchhhhhccchhh
Confidence                 123567888888999888876544443333   3558899999988853     333334566789999999998


Q ss_pred             CChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEE
Q 000742         1070 LESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELN 1149 (1313)
Q Consensus      1070 l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~ 1149 (1313)
                      |....    ......+++|++||||+|.|+......+..+-     .|++|+|++|.|+..    --.+|..+++|++||
T Consensus       305 I~rih----~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~-----~Le~LnLs~Nsi~~l----~e~af~~lssL~~Ld  371 (873)
T KOG4194|consen  305 IQRIH----IDSWSFTQKLKELDLSSNRITRLDEGSFRVLS-----QLEELNLSHNSIDHL----AEGAFVGLSSLHKLD  371 (873)
T ss_pred             hheee----cchhhhcccceeEeccccccccCChhHHHHHH-----HhhhhcccccchHHH----HhhHHHHhhhhhhhc
Confidence            87663    23456788899999999988855555554432     388899999988743    123467788899999


Q ss_pred             ccCCCCC----hh-hhhhhcccccccCCcccccccccccccccccccccccccCCCCcccccccCCccchhhhccccCCC
Q 000742         1150 LADNASK----EL-TLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFDN 1224 (1313)
Q Consensus      1150 Ls~N~i~----~~-~~~~~l~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 1224 (1313)
                      |++|.|.    |. +...-+.+|+.+.|.+|++.+++.            ..|.++..||.|||.+|.|..+-+. .  +
T Consensus       372 Lr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~k------------rAfsgl~~LE~LdL~~NaiaSIq~n-A--F  436 (873)
T KOG4194|consen  372 LRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPK------------RAFSGLEALEHLDLGDNAIASIQPN-A--F  436 (873)
T ss_pred             CcCCeEEEEEecchhhhccchhhhheeecCceeeecch------------hhhccCcccceecCCCCcceeeccc-c--c
Confidence            9999854    32 222224677788899999888876            6688889999999999988766332 1  1


Q ss_pred             CcccccccCCccchhhH-----HHHHHHHhc
Q 000742         1225 SCTSSCQKNSSFECQFV-----QELSSAIGM 1250 (1313)
Q Consensus      1225 ~~~~~L~~L~Ls~n~l~-----~~l~~~l~~ 1250 (1313)
                      . ...|++|.+..-.|.     .-++.||..
T Consensus       437 e-~m~Lk~Lv~nSssflCDCql~Wl~qWl~~  466 (873)
T KOG4194|consen  437 E-PMELKELVMNSSSFLCDCQLKWLAQWLYR  466 (873)
T ss_pred             c-cchhhhhhhcccceEEeccHHHHHHHHHh
Confidence            1 126777766443322     335556554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.92  E-value=2.7e-23  Score=240.63  Aligned_cols=308  Identities=25%  Similarity=0.251  Sum_probs=216.9

Q ss_pred             HHhcCCCchHHHHHHHhhccCCCeEEecCCCCCcCCHHHHHHHhhcCCCcCEEEecCCCCC--HHHHHHHHHHHHhcccC
Q 000742          811 CKELSEAPNMKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLG--NGTMEKLQQFFISSCQN  888 (1313)
Q Consensus       811 c~~l~~~~~~~~l~~l~~~~~~~~l~l~~~~l~~~~~~~l~~~L~~~~~L~~L~Ls~n~l~--~~~~~~L~~~l~~~~~~  888 (1313)
                      |..++...+..++..+..+   +.+++++|.+++.++..+...+...++|+.|+++++.++  ..++..+...+..   .
T Consensus         7 ~~~l~~~~~~~~~~~l~~L---~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~---~   80 (319)
T cd00116           7 GELLKTERATELLPKLLCL---QVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK---G   80 (319)
T ss_pred             cCcccccchHHHHHHHhhc---cEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh---c
Confidence            3345556677777777664   559999999999888889999988899999999999988  5666666655442   5


Q ss_pred             ccceEEEccCCCCCHHHHHHHHhcccCCCCcCEEEecCCCCChhHHHHHHHHHhcC-CCCcEEEeecCCCCHHHHHHHHH
Q 000742          889 YVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNC-KVLYSLNIENCSITSRTIQKVAD  967 (1313)
Q Consensus       889 ~~l~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~  967 (1313)
                      .+++.|+|++|.+.......+..+... ++|++|+|++|.+++.++..+...+..+ ++|+.|+|++|.++..+...+..
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            567888888888876666566555333 5688888888888877777777777777 78888888888888777777777


Q ss_pred             HHhcCCCccEEEeCCCCCCChhhHHHHHHhhccCCccceeecCCCCCChHHHHHHHHH-hhcCCccEEEccCCCCCCchH
Q 000742          968 ALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQL-AKTSCLTHLMLGCTNLGSDGS 1046 (1313)
Q Consensus       968 ~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l-~~~~~L~~L~Ls~n~i~~~~~ 1046 (1313)
                      .+..+++|++|+|++|. +++.++..++..+..+++|+.|+|++|.+++.....+... ..+++|++|++++|.+++.++
T Consensus       160 ~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~  238 (319)
T cd00116         160 ALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA  238 (319)
T ss_pred             HHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence            77777788888888887 5555566666666666777777777777776665555442 335667777777777766666


Q ss_pred             HHHHHHHhcCCCcccEEEccCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCC
Q 000742         1047 LQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQ 1126 (1313)
Q Consensus      1047 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 1126 (1313)
                      ..++..+....+.|++|++++|.+++.+...++..+..+++|++|++++|.+++.+...++..+..+.+.|++|++.+|.
T Consensus       239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            66665554434566666666666666666666666666666666666666666666666666665543456666666554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.92  E-value=6.3e-23  Score=273.97  Aligned_cols=430  Identities=13%  Similarity=0.054  Sum_probs=321.2

Q ss_pred             hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCC--------chhHHHHHHH
Q 000742            5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKH--------LLPTCQSLGE   76 (1313)
Q Consensus         5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~--------~~~~~~~lg~   76 (1313)
                      .|++++|+..|+++++..|....+  +..+|.+|...|++++|+.+|+++++..+.......        .......+|.
T Consensus       282 ~g~~~~A~~~l~~aL~~~P~~~~a--~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~  359 (1157)
T PRK11447        282 SGQGGKAIPELQQAVRANPKDSEA--LGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD  359 (1157)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence            578999999999999999987666  899999999999999999999999988754321100        1123345688


Q ss_pred             HHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCC
Q 000742           77 VYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPAT  156 (1313)
Q Consensus        77 ~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~  156 (1313)
                      ++...|++++|+.+| ++++++.|...      .++..+|.+|...        |++++|+.+|++++++          
T Consensus       360 ~~~~~g~~~eA~~~~-~~Al~~~P~~~------~a~~~Lg~~~~~~--------g~~~eA~~~y~~aL~~----------  414 (1157)
T PRK11447        360 AALKANNLAQAERLY-QQARQVDNTDS------YAVLGLGDVAMAR--------KDYAAAERYYQQALRM----------  414 (1157)
T ss_pred             HHHHCCCHHHHHHHH-HHHHHhCCCCH------HHHHHHHHHHHHC--------CCHHHHHHHHHHHHHh----------
Confidence            999999999999999 99999876442      5788999999988        9999999999999988          


Q ss_pred             CcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000742          157 SRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDI  236 (1313)
Q Consensus       157 ~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal  236 (1313)
                           .|....++..++.+|.. +++++|+.++++.....++.............+..+|.++...|++++|++.|++++
T Consensus       415 -----~p~~~~a~~~L~~l~~~-~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al  488 (1157)
T PRK11447        415 -----DPGNTNAVRGLANLYRQ-QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRL  488 (1157)
T ss_pred             -----CCCCHHHHHHHHHHHHh-cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence                 23445678889998864 678999998876543321100000011224467789999999999999999999999


Q ss_pred             HHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHH--HH
Q 000742          237 IICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKE--EQ  314 (1313)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~--~~  314 (1313)
                      ++.+      ....+++.+|.+|...|++++|+..++++++..|.........+..+...++..+|+..++++...  .+
T Consensus       489 ~~~P------~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~  562 (1157)
T PRK11447        489 ALDP------GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNS  562 (1157)
T ss_pred             HhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcCh
Confidence            9876      667889999999999999999999999999988766555444454555566667777766653210  00


Q ss_pred             HHHH-----------HHHHHHHhhCCchHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhh
Q 000742          315 NLKK-----------LTRNMIIAKGTSQERKYLLQQN----ASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKL  379 (1313)
Q Consensus       315 ~~~~-----------l~~~l~~~~~~~~~a~~~~~~~----~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~  379 (1313)
                      .+..           .........+..+++..+++..    ..+..++..+...+++++|++.|++++...      |..
T Consensus       563 ~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~------P~~  636 (1157)
T PRK11447        563 NIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE------PGN  636 (1157)
T ss_pred             hHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCC
Confidence            0000           0111223455666666666532    345678899999999999999999998753      556


Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHH
Q 000742          380 SDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQ  459 (1313)
Q Consensus       380 a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~~  459 (1313)
                      +.++..+|.+|...|++++|++.|+++++..      +....++..+|.++...|++++|+.+|++++....+.......
T Consensus       637 ~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~  710 (1157)
T PRK11447        637 ADARLGLIEVDIAQGDLAAARAQLAKLPATA------NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMES  710 (1157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHhccC------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhh
Confidence            7899999999999999999999999887653      3455678889999999999999999999999876443322234


Q ss_pred             HHHHHhhHHHHHHhhcCHHHHHHHHHH
Q 000742          460 LSALENMHYSHMIRFDNIEEARRLQHE  486 (1313)
Q Consensus       460 ~~al~~L~~~~~~~~~~~~~a~~~~e~  486 (1313)
                      ..++..++.++... ++.++|..+++.
T Consensus       711 a~~~~~~a~~~~~~-G~~~~A~~~y~~  736 (1157)
T PRK11447        711 ALVLRDAARFEAQT-GQPQQALETYKD  736 (1157)
T ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence            55677778777544 444444444443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.91  E-value=8.3e-24  Score=222.50  Aligned_cols=328  Identities=20%  Similarity=0.207  Sum_probs=286.4

Q ss_pred             cCCCeEEecCCCCCcCCHHHHHHHhhcCCCcCEEEecCCCC---CHHH---HHHHHHHHHhcccCccceEEEccCCCCCH
Q 000742          830 EVEDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLL---GNGT---MEKLQQFFISSCQNYVDLTLDLHCNRFGP  903 (1313)
Q Consensus       830 ~~~~~l~l~~~~l~~~~~~~l~~~L~~~~~L~~L~Ls~n~l---~~~~---~~~L~~~l~~~~~~~~l~~L~Ls~n~l~~  903 (1313)
                      .....|+|++|.++......++..|...+.|+..++|+-..   .++.   +..|.+.+.   ..+.|++||||.|.|++
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~---~~~~L~~ldLSDNA~G~  106 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALL---GCPKLQKLDLSDNAFGP  106 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHh---cCCceeEeeccccccCc
Confidence            33577999999999999999999999999999999998653   3333   444444443   34478999999999999


Q ss_pred             HHHHHHHhcccCCCCcCEEEecCCCCChhHHHHHHHHHh---------cCCCCcEEEeecCCCCHHHHHHHHHHHhcCCC
Q 000742          904 TTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILK---------NCKVLYSLNIENCSITSRTIQKVADALGAEST  974 (1313)
Q Consensus       904 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~---------~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~  974 (1313)
                      .++..|..++..+.+|++|.|.+|.++..|...|+.+|.         ..+.|+++...+|.+.+.+...++.+|..++.
T Consensus       107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~  186 (382)
T KOG1909|consen  107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT  186 (382)
T ss_pred             cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence            999999999999999999999999999999988777543         34579999999999999999999999999999


Q ss_pred             ccEEEeCCCCCCChhhHHHHHHhhccCCccceeecCCCCCChHHHHHHHHHhh-cCCccEEEccCCCCCCchHHHHHHHH
Q 000742          975 LAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAK-TSCLTHLMLGCTNLGSDGSLQLVESL 1053 (1313)
Q Consensus       975 L~~L~Ls~n~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l 1053 (1313)
                      |+.+.++.|. +...++..+...+..|++|+.|||.+|-++..+...++...+ .++|++|++++|.+.+.|...+..++
T Consensus       187 leevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al  265 (382)
T KOG1909|consen  187 LEEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL  265 (382)
T ss_pred             cceEEEeccc-ccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence            9999999999 677777888899999999999999999999999988887544 67799999999999999999999999


Q ss_pred             hcCCCcccEEEccCCCCChhHHHHHHHHHhcCCCccEEEccCCCC--ChHHHHHHHHHhcCCCCceeEEEeecCCCCHHH
Q 000742         1054 FSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPI--MKEGANALASLLMNPQCCLKVLVLSKCQLGLAG 1131 (1313)
Q Consensus      1054 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i--~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g 1131 (1313)
                      ....++|+.|.|.+|.|+..+...+..++...+.|..|+|++|.+  .+.++..+...+......+...+.+.+.+...|
T Consensus       266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei~~~~~~~~~~~~~~~~s~e~l~~eg  345 (382)
T KOG1909|consen  266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEIASKFDTAHVLLEDIDDSEEELEREG  345 (382)
T ss_pred             hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHHHHhcccccccchhhchhHHHHHhhh
Confidence            988899999999999999999999988888899999999999999  788888888887443334777888999999999


Q ss_pred             HHHHHHHhhcCCCccEEEccCCCCChhhhh
Q 000742         1132 VLQLIKALSENDTLEELNLADNASKELTLQ 1161 (1313)
Q Consensus      1132 ~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~ 1161 (1313)
                      ............+=+.++..+|.+.+.+..
T Consensus       346 ~e~e~~~~~~~~t~~e~~ed~e~ie~e~~e  375 (382)
T KOG1909|consen  346 EEDEEEEVEKKETFKELNEDGEVIEEEGIE  375 (382)
T ss_pred             hhHHHHHHHhcCcchhhcccccccchhHHH
Confidence            988888888888888899999988887654

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.90  E-value=1.8e-21  Score=259.91  Aligned_cols=409  Identities=16%  Similarity=0.164  Sum_probs=232.6

Q ss_pred             hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh
Q 000742            5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF   84 (1313)
Q Consensus         5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~   84 (1313)
                      .|++++|...+++.....+.....  +..+|.+|...|++++|+++|+++++..+      ....++..+|.++...|++
T Consensus       444 ~~~~~~A~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~la~~~~~~g~~  515 (899)
T TIGR02917       444 SGQFDKALAAAKKLEKKQPDNASL--HNLLGAIYLGKGDLAKAREAFEKALSIEP------DFFPAAANLARIDIQEGNP  515 (899)
T ss_pred             cCCHHHHHHHHHHHHHhCCCCcHH--HHHHHHHHHhCCCHHHHHHHHHHHHhhCC------CcHHHHHHHHHHHHHCCCH
Confidence            467778888888777766665444  77788888888888888888888776542      2256677778888888888


Q ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHH
Q 000742           85 KDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKE  164 (1313)
Q Consensus        85 ~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~  164 (1313)
                      ++|..++ +++++..|..      ..++..++.+|...        |++++|+.++++++...               |.
T Consensus       516 ~~A~~~~-~~~~~~~~~~------~~~~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~---------------~~  565 (899)
T TIGR02917       516 DDAIQRF-EKVLTIDPKN------LRAILALAGLYLRT--------GNEEEAVAWLEKAAELN---------------PQ  565 (899)
T ss_pred             HHHHHHH-HHHHHhCcCc------HHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhC---------------cc
Confidence            8888887 7777665433      24566677777655        67777777777765541               12


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhch
Q 000742          165 YIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEH  244 (1313)
Q Consensus       165 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~  244 (1313)
                      ....+..++..|...|++++|+.+++++++..+.         ...++..+|.+|...|++++|+..|+++++..+    
T Consensus       566 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----  632 (899)
T TIGR02917       566 EIEPALALAQYYLGKGQLKKALAILNEAADAAPD---------SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP----  632 (899)
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----
Confidence            2344555555555555555555555555543211         233455555555555555555555555555432    


Q ss_pred             hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHH---------------------------------
Q 000742          245 CQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQ---------------------------------  291 (1313)
Q Consensus       245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~---------------------------------  291 (1313)
                        ....++..+|.+|...|++++|+.+|+++++..|.........+.                                 
T Consensus       633 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  710 (899)
T TIGR02917       633 --DSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEG  710 (899)
T ss_pred             --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHH
Confidence              334455555555555555555555555555554443333333333                                 


Q ss_pred             -HHHhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhCCchHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Q 000742          292 -IDQNIETVKKAIEVMDELKKEEQNLK--KLTRNMIIAKGTSQERKYLLQQN--------ASLDRLIEKSSMIFAWLKHC  360 (1313)
Q Consensus       292 -~~~~lg~~~~a~~~~~~a~~~~~~~~--~l~~~l~~~~~~~~~a~~~~~~~--------~~l~~L~~~~~~~~~~~~A~  360 (1313)
                       ++...|++.+|+..|.++....+...  ..........+..+++...++..        ..+..++..+...+++++|.
T Consensus       711 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~  790 (899)
T TIGR02917       711 DLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAI  790 (899)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence             34444444444444444432211110  00111112233444444333332        23344555566666666666


Q ss_pred             HHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 000742          361 EYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGAL  440 (1313)
Q Consensus       361 ~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~  440 (1313)
                      .++++++...      |..+.++..+|.+|...|+ .+|+.++++++++.+      ....++..+|.+|...|++++|+
T Consensus       791 ~~~~~~~~~~------p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~~A~  857 (899)
T TIGR02917       791 KHYRTVVKKA------PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP------NIPAILDTLGWLLVEKGEADRAL  857 (899)
T ss_pred             HHHHHHHHhC------CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC------CCcHHHHHHHHHHHHcCCHHHHH
Confidence            6666665432      3344566666666666666 666666666665432      33445667777777788888888


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHhhHHHHHHhhcCHHHHHHHHHH
Q 000742          441 DAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEARRLQHE  486 (1313)
Q Consensus       441 ~~~~kAl~i~~~~~~~~~~~~al~~L~~~~~~~~~~~~~a~~~~e~  486 (1313)
                      .+|++++++...      ...++.+++.++... ++.++|..+.+.
T Consensus       858 ~~~~~a~~~~~~------~~~~~~~l~~~~~~~-g~~~~A~~~~~~  896 (899)
T TIGR02917       858 PLLRKAVNIAPE------AAAIRYHLALALLAT-GRKAEARKELDK  896 (899)
T ss_pred             HHHHHHHhhCCC------ChHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence            888877775421      334666777666443 444555554443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.90  E-value=7.1e-23  Score=215.53  Aligned_cols=297  Identities=21%  Similarity=0.226  Sum_probs=249.1

Q ss_pred             CcCCHHHHHHHhhcCCCcCEEEecCCCCCHHHHHHHHHHHHhcccCccceEEEccCC---CCCHH---HHHHHHhcccCC
Q 000742          843 QDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCN---RFGPT---TLFQICECPVLF  916 (1313)
Q Consensus       843 ~~~~~~~l~~~L~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~~~~l~~L~Ls~n---~l~~~---~~~~l~~~l~~~  916 (1313)
                      +..+...+...+....+++.|+||+|.++.+.++.+++.+.+.   ..|+..++|+-   ++...   .+..+...+..+
T Consensus        15 t~ed~~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~---~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~   91 (382)
T KOG1909|consen   15 TEEDEKDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASK---KELREVNLSDMFTGRLKDEIPEALKMLSKALLGC   91 (382)
T ss_pred             hHhhhhhHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhc---ccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcC
Confidence            3445667777788888999999999999999999999987753   36788887764   33333   334566667778


Q ss_pred             CCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHHH
Q 000742          917 TRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLV  996 (1313)
Q Consensus       917 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~  996 (1313)
                      +.|+.||||.|-|+..|++.+...+.+|.+|++|.|.+|+++..+...++.+|..+.        .|.            
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~--------~~k------------  151 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA--------VNK------------  151 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH--------HHh------------
Confidence            899999999999999999999999999999999999999999999999888776432        111            


Q ss_pred             hhccCCccceeecCCCCCChHHHHHHHHHhh-cCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHH
Q 000742          997 KLDTLKSFSELNLNGLKLSKPVVDRLCQLAK-TSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCI 1075 (1313)
Q Consensus       997 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 1075 (1313)
                      ....-+.|+.+..+.|.+.+.+...++...+ .++|+.+.++.|.|...|+..++.++.. +++|+.|||.+|.++..|.
T Consensus       152 k~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~-~~~LevLdl~DNtft~egs  230 (382)
T KOG1909|consen  152 KAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEH-CPHLEVLDLRDNTFTLEGS  230 (382)
T ss_pred             ccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHh-CCcceeeecccchhhhHHH
Confidence            1234457788888888887777777766444 5689999999999999999888888875 4899999999999999999


Q ss_pred             HHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEccCCCC
Q 000742         1076 HKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNAS 1155 (1313)
Q Consensus      1076 ~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i 1155 (1313)
                      ..++..++.+++|++|++++|.+.+.|..++...+.....+|++|.|.+|.|+..+...+..++...+.|..|+|++|.+
T Consensus       231 ~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  231 VALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            99999999999999999999999999999999999876678999999999999999999999999999999999999999


Q ss_pred             --Chhhhhhh
Q 000742         1156 --KELTLQQN 1163 (1313)
Q Consensus      1156 --~~~~~~~~ 1163 (1313)
                        .+.++..+
T Consensus       311 ~e~de~i~ei  320 (382)
T KOG1909|consen  311 GEKDEGIDEI  320 (382)
T ss_pred             cccchhHHHH
Confidence              55555544

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.90  E-value=4.1e-21  Score=256.55  Aligned_cols=380  Identities=13%  Similarity=0.097  Sum_probs=289.5

Q ss_pred             chhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742            4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH   83 (1313)
Q Consensus         4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~   83 (1313)
                      ..+++++|++.++++.+..+....+  ...++..|...|++++|++.+++.....      +....++..+|.+|...|+
T Consensus       409 ~~~~~~~A~~~~~~a~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~  480 (899)
T TIGR02917       409 SQGDPSEAIADLETAAQLDPELGRA--DLLLILSYLRSGQFDKALAAAKKLEKKQ------PDNASLHNLLGAIYLGKGD  480 (899)
T ss_pred             hCCChHHHHHHHHHHHhhCCcchhh--HHHHHHHHHhcCCHHHHHHHHHHHHHhC------CCCcHHHHHHHHHHHhCCC
Confidence            4578999999999999998876665  6688999999999999999999987654      2336789999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhH
Q 000742           84 FKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLK  163 (1313)
Q Consensus        84 ~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p  163 (1313)
                      +++|+.+| +++++..+...      .++..+|.++...        |++++|+.+|+++++.               .|
T Consensus       481 ~~~A~~~~-~~a~~~~~~~~------~~~~~la~~~~~~--------g~~~~A~~~~~~~~~~---------------~~  530 (899)
T TIGR02917       481 LAKAREAF-EKALSIEPDFF------PAAANLARIDIQE--------GNPDDAIQRFEKVLTI---------------DP  530 (899)
T ss_pred             HHHHHHHH-HHHHhhCCCcH------HHHHHHHHHHHHC--------CCHHHHHHHHHHHHHh---------------Cc
Confidence            99999999 99998765432      4678999999977        9999999999999876               23


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000742          164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIE  243 (1313)
Q Consensus       164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~  243 (1313)
                      ....++..++.++...|++++|+.++++++...+.         ....+..++.+|...|++++|+.++++++...+   
T Consensus       531 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---  598 (899)
T TIGR02917       531 KNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ---------EIEPALALAQYYLGKGQLKKALAILNEAADAAP---  598 (899)
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---------chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC---
Confidence            44678999999999999999999999999887332         456788899999999999999999999987654   


Q ss_pred             hhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHH
Q 000742          244 HCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLK---KLT  320 (1313)
Q Consensus       244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~---~l~  320 (1313)
                         ....++..+|.+|...|++++|+.+|+++++..+.........+.++...|++.+|...++++....+...   ...
T Consensus       599 ---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  675 (899)
T TIGR02917       599 ---DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGL  675 (899)
T ss_pred             ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence               56778999999999999999999999999999887777777788899999999999999999876544322   122


Q ss_pred             HHHHHhhCCchHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHH
Q 000742          321 RNMIIAKGTSQERKYLLQQN--------ASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQK  392 (1313)
Q Consensus       321 ~~l~~~~~~~~~a~~~~~~~--------~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~  392 (1313)
                      ..+....+..+++..+++..        ..+..++..+...++|++|.+++++++.....      . ..+..+|.+|..
T Consensus       676 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~------~-~~~~~l~~~~~~  748 (899)
T TIGR02917       676 AQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS------S-QNAIKLHRALLA  748 (899)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC------c-hHHHHHHHHHHH
Confidence            22334455666666655543        33455677777778888888888777654211      1 344455555555


Q ss_pred             hhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000742          393 LRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRI  449 (1313)
Q Consensus       393 ~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i  449 (1313)
                      .|++++|+..++++++..+      ....++..+|.+|...|++++|+.+|+++++.
T Consensus       749 ~g~~~~A~~~~~~~l~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  799 (899)
T TIGR02917       749 SGNTAEAVKTLEAWLKTHP------NDAVLRTALAELYLAQKDYDKAIKHYRTVVKK  799 (899)
T ss_pred             CCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence            5555555555555554322      23345555555555555555555555555543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=8.8e-21  Score=206.15  Aligned_cols=393  Identities=13%  Similarity=0.085  Sum_probs=293.5

Q ss_pred             chhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742            4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH   83 (1313)
Q Consensus         4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~   83 (1313)
                      .++.|++|+++|.+|++..|+....  |.+++-+|...|+|++.++...+|+++.+++      ..+++..+.++..+|+
T Consensus       127 ~~kkY~eAIkyY~~AI~l~p~epiF--YsNraAcY~~lgd~~~Vied~TkALEl~P~Y------~KAl~RRA~A~E~lg~  198 (606)
T KOG0547|consen  127 RNKKYDEAIKYYTQAIELCPDEPIF--YSNRAACYESLGDWEKVIEDCTKALELNPDY------VKALLRRASAHEQLGK  198 (606)
T ss_pred             hcccHHHHHHHHHHHHhcCCCCchh--hhhHHHHHHHHhhHHHHHHHHHHHhhcCcHH------HHHHHHHHHHHHhhcc
Confidence            3578999999999999999986554  8899999999999999999999999998665      8999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCHHHHH---HHHHHHH----------------------HHHHHHhc---------cCCc-
Q 000742           84 FKDALIYQVKKHLELAKDASDLVEQQ---RACTQLG----------------------RTYYEMFL---------RSDD-  128 (1313)
Q Consensus        84 ~~~A~~~~~~kal~l~~~~~~~~~~a---~a~~~lg----------------------~~y~~l~~---------~~~~-  128 (1313)
                      +++|+...  .++-+.....+.....   +.+...|                      ..|...|.         .+.. 
T Consensus       199 ~~eal~D~--tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ks  276 (606)
T KOG0547|consen  199 FDEALFDV--TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKS  276 (606)
T ss_pred             HHHHHHhh--hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccc
Confidence            99998754  2222222221111000   0111111                      11111110         0000 


Q ss_pred             --------------chhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000742          129 --------------DHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLE  194 (1313)
Q Consensus       129 --------------~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  194 (1313)
                                    ....|.+|..++.+..............  ..-...++.++...|..++-.|++-.|...|+++++
T Consensus       277 Da~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~--d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~  354 (606)
T KOG0547|consen  277 DAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEI--DAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK  354 (606)
T ss_pred             hhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhcccccc--chhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence                          1123444555554444433322111100  111257799999999999999999999999999999


Q ss_pred             HhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 000742          195 ICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQK  274 (1313)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~k  274 (1313)
                      +.+.         ....|..+|.+|....+.++-..+|.+|..+.+      ..+.+|+..|++++-+++|++|+.-|++
T Consensus       355 l~~~---------~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp------~n~dvYyHRgQm~flL~q~e~A~aDF~K  419 (606)
T KOG0547|consen  355 LDPA---------FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDP------ENPDVYYHRGQMRFLLQQYEEAIADFQK  419 (606)
T ss_pred             cCcc---------cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCC------CCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence            8554         334589999999999999999999999999977      7888999999999999999999999999


Q ss_pred             HHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 000742          275 ALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIF  354 (1313)
Q Consensus       275 al~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~  354 (1313)
                      |+.+.|...-.+.....+.+..+.+.+++..|++++..++.....                       +.-.+++....+
T Consensus       420 ai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Ev-----------------------y~~fAeiLtDqq  476 (606)
T KOG0547|consen  420 AISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEV-----------------------YNLFAEILTDQQ  476 (606)
T ss_pred             HhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchH-----------------------HHHHHHHHhhHH
Confidence            999999988888888888889999999999999998776666554                       445566667789


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHc
Q 000742          355 AWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESY-QKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSN  433 (1313)
Q Consensus       355 ~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y-~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~  433 (1313)
                      +|++|.+.|..++.+..........+..+...|.+. .-.+++.+|+..++||+++++      .-..++..||.+..++
T Consensus       477 qFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dp------kce~A~~tlaq~~lQ~  550 (606)
T KOG0547|consen  477 QFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDP------KCEQAYETLAQFELQR  550 (606)
T ss_pred             hHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCc------hHHHHHHHHHHHHHHH
Confidence            999999999999998765322211222233333222 234899999999999998876      4456799999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHH
Q 000742          434 GDWAGALDAFQEGYRIAVE  452 (1313)
Q Consensus       434 g~~~~A~~~~~kAl~i~~~  452 (1313)
                      |+.++|+++|++++.+++.
T Consensus       551 ~~i~eAielFEksa~lArt  569 (606)
T KOG0547|consen  551 GKIDEAIELFEKSAQLART  569 (606)
T ss_pred             hhHHHHHHHHHHHHHHHHh
Confidence            9999999999999999876

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.89  E-value=1.1e-20  Score=252.53  Aligned_cols=395  Identities=13%  Similarity=0.064  Sum_probs=293.1

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHH-----
Q 000742           33 VIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVE-----  107 (1313)
Q Consensus        33 ~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~-----  107 (1313)
                      .+|..+...|++++|+..|+++++..+.      ...++..+|.+|..+|++++|+.+| +++++..++......     
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~------~~~a~~~Lg~~~~~~g~~~eA~~~l-~~Al~~~p~~~~~~~~~~ll  346 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRANPK------DSEALGALGQAYSQQGDRARAVAQF-EKALALDPHSSNRDKWESLL  346 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHhCCCccchhHHHHHH
Confidence            5689999999999999999999998633      3789999999999999999999999 999998876543210     


Q ss_pred             ---HHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHH
Q 000742          108 ---QQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEE  184 (1313)
Q Consensus       108 ---~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~  184 (1313)
                         .......+|.++...        |++++|+..|++++++               .|..+.++..+|.+|...|++++
T Consensus       347 ~~~~~~~~~~~g~~~~~~--------g~~~eA~~~~~~Al~~---------------~P~~~~a~~~Lg~~~~~~g~~~e  403 (1157)
T PRK11447        347 KVNRYWLLIQQGDAALKA--------NNLAQAERLYQQARQV---------------DNTDSYAVLGLGDVAMARKDYAA  403 (1157)
T ss_pred             HhhhHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHCCCHHH
Confidence               112234557777766        9999999999999988               23446789999999999999999


Q ss_pred             HHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-c--hhhhHHHHHHHHHHHHHH
Q 000742          185 AKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKI-E--HCQGEAKGYINLGELHYR  261 (1313)
Q Consensus       185 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~-~--~~~~~~~~~~~la~~~~~  261 (1313)
                      |+++|++++++.+.         ...++..++.+|. .+++++|+.++++.....++. .  ........+..+|.++..
T Consensus       404 A~~~y~~aL~~~p~---------~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~  473 (1157)
T PRK11447        404 AERYYQQALRMDPG---------NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALEN  473 (1157)
T ss_pred             HHHHHHHHHHhCCC---------CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            99999999998433         3567888999885 467899999987654432211 0  011224567789999999


Q ss_pred             hcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhCCchHHHHHHH
Q 000742          262 VQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLT---RNMIIAKGTSQERKYLLQ  338 (1313)
Q Consensus       262 ~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~---~~l~~~~~~~~~a~~~~~  338 (1313)
                      .|++++|+.+|++++++.|........++.++...|++.+|...++++....+......   .......+..+++...++
T Consensus       474 ~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~  553 (1157)
T PRK11447        474 QGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLN  553 (1157)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            99999999999999999988776667778888888999999998888875433211111   111122334444444333


Q ss_pred             HH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHH
Q 000742          339 QN------------------ASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAI  400 (1313)
Q Consensus       339 ~~------------------~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~  400 (1313)
                      ..                  ...-.++..+...+++++|+..++          ..|..+.++..+|.+|.++|++++|+
T Consensus       554 ~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~----------~~p~~~~~~~~La~~~~~~g~~~~A~  623 (1157)
T PRK11447        554 TLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR----------QQPPSTRIDLTLADWAQQRGDYAAAR  623 (1157)
T ss_pred             hCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH----------hCCCCchHHHHHHHHHHHcCCHHHHH
Confidence            21                  011233455566667777766554          23556678899999999999999999


Q ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhHHHHHHhhcCHHHH
Q 000742          401 KWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEA  480 (1313)
Q Consensus       401 ~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~~L~~~~~~~~~~~~~a  480 (1313)
                      ..|+++++..+      ....++..+|.+|...|++++|+.+|+++++...  +    ...++..++.++. ..++.++|
T Consensus       624 ~~y~~al~~~P------~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p--~----~~~~~~~la~~~~-~~g~~~eA  690 (1157)
T PRK11447        624 AAYQRVLTREP------GNADARLGLIEVDIAQGDLAAARAQLAKLPATAN--D----SLNTQRRVALAWA-ALGDTAAA  690 (1157)
T ss_pred             HHHHHHHHhCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC--C----ChHHHHHHHHHHH-hCCCHHHH
Confidence            99999998754      5567899999999999999999999998876531  1    2345667777775 45667777


Q ss_pred             HHHHHHHHHH
Q 000742          481 RRLQHEIDKL  490 (1313)
Q Consensus       481 ~~~~e~~~~l  490 (1313)
                      ..+.+.+...
T Consensus       691 ~~~~~~al~~  700 (1157)
T PRK11447        691 QRTFNRLIPQ  700 (1157)
T ss_pred             HHHHHHHhhh
Confidence            7776666544

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.88  E-value=1.2e-19  Score=213.34  Aligned_cols=387  Identities=13%  Similarity=0.148  Sum_probs=297.3

Q ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHH
Q 000742            8 MSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDA   87 (1313)
Q Consensus         8 ~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A   87 (1313)
                      ++.|.+.|....+..|++..+  +...|.+.+..|+|-.|+.+|++++.+.+...     +.....+|.|+..+|+.+.|
T Consensus       146 ~~~A~a~F~~Vl~~sp~Nil~--LlGkA~i~ynkkdY~~al~yyk~al~inp~~~-----aD~rIgig~Cf~kl~~~~~a  218 (1018)
T KOG2002|consen  146 MDDADAQFHFVLKQSPDNILA--LLGKARIAYNKKDYRGALKYYKKALRINPACK-----ADVRIGIGHCFWKLGMSEKA  218 (1018)
T ss_pred             HHHHHHHHHHHHhhCCcchHH--HHHHHHHHhccccHHHHHHHHHHHHhcCcccC-----CCccchhhhHHHhccchhhH
Confidence            688999999999999998777  88889999999999999999999999886553     44456789999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHH
Q 000742           88 LIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYID  167 (1313)
Q Consensus        88 ~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~  167 (1313)
                      +..+ ++|+++.|..      +.++..||.+-...     .+...+..|...+.+|...               .+..+.
T Consensus       219 ~~a~-~ralqLdp~~------v~alv~L~~~~l~~-----~d~~s~~~~~~ll~~ay~~---------------n~~nP~  271 (1018)
T KOG2002|consen  219 LLAF-ERALQLDPTC------VSALVALGEVDLNF-----NDSDSYKKGVQLLQRAYKE---------------NNENPV  271 (1018)
T ss_pred             HHHH-HHHHhcChhh------HHHHHHHHHHHHHc-----cchHHHHHHHHHHHHHHhh---------------cCCCcH
Confidence            9999 9999998843      35566666665443     2335666777777776655               224468


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhh
Q 000742          168 AHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQG  247 (1313)
Q Consensus       168 ~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~  247 (1313)
                      +...+|..|+..|+|+.+......|+....      ..+..+..++.+|..|..+|+|++|..||.++++..+.     .
T Consensus       272 ~l~~LAn~fyfK~dy~~v~~la~~ai~~t~------~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d-----~  340 (1018)
T KOG2002|consen  272 ALNHLANHFYFKKDYERVWHLAEHAIKNTE------NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADND-----N  340 (1018)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHHHhhh------hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCC-----C
Confidence            999999999999999999999999988743      36678899999999999999999999999999988662     3


Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742          248 EAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIE----TVKKAIEVMDELKKEEQNLKKLTRNM  323 (1313)
Q Consensus       248 ~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg----~~~~a~~~~~~a~~~~~~~~~l~~~l  323 (1313)
                      ....++.+|++|...|+++.|+.+|++.++..|........++.+|...+    ...+|..+..++....          
T Consensus       341 ~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~----------  410 (1018)
T KOG2002|consen  341 FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT----------  410 (1018)
T ss_pred             ccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc----------
Confidence            47788999999999999999999999999999988777777776666654    2233333333332111          


Q ss_pred             HHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHH
Q 000742          324 IIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWY  403 (1313)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~  403 (1313)
                            +...       ..+-.++..+....-|. ++.+|..|+.+....... ..++.+.++|..++.+|++.+|..+|
T Consensus       411 ------~~d~-------~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f  475 (1018)
T KOG2002|consen  411 ------PVDS-------EAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHF  475 (1018)
T ss_pred             ------cccH-------HHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHH
Confidence                  1111       12333444444333333 378888888777666555 56789999999999999999999999


Q ss_pred             HHHHHHHHHhCCchh----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhHHHH
Q 000742          404 TKSWEMYKSIGNLEG----QALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSH  470 (1313)
Q Consensus       404 ~kal~l~~~~~~~~~----~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~~L~~~~  470 (1313)
                      .+|+.......+...    .....|++|.++..+++++.|.+.|...++..      +....+|.+++.+.
T Consensus       476 ~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh------p~YId~ylRl~~ma  540 (1018)
T KOG2002|consen  476 KSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH------PGYIDAYLRLGCMA  540 (1018)
T ss_pred             HHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC------chhHHHHHHhhHHH
Confidence            999988543333221    24468999999999999999999999988763      33566888887444

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.88  E-value=2.6e-19  Score=210.36  Aligned_cols=412  Identities=16%  Similarity=0.140  Sum_probs=237.2

Q ss_pred             hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChH
Q 000742            6 MQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFK   85 (1313)
Q Consensus         6 ~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~   85 (1313)
                      ..+..|...+..|-..++.++.+  +..++..|+..|+|..+...+.-|+....   .....++.++++|.+|..+|+|+
T Consensus       250 ~s~~~~~~ll~~ay~~n~~nP~~--l~~LAn~fyfK~dy~~v~~la~~ai~~t~---~~~~~aes~Y~~gRs~Ha~Gd~e  324 (1018)
T KOG2002|consen  250 DSYKKGVQLLQRAYKENNENPVA--LNHLANHFYFKKDYERVWHLAEHAIKNTE---NKSIKAESFYQLGRSYHAQGDFE  324 (1018)
T ss_pred             HHHHHHHHHHHHHHhhcCCCcHH--HHHHHHHHhhcccHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHhhccHH
Confidence            44666677777777776666666  66777777778888877777777776552   22334677788888888888888


Q ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHH
Q 000742           86 DALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEY  165 (1313)
Q Consensus        86 ~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~  165 (1313)
                      +|..|| .++++..++.-     ...++.+|.+|...        |+++.|+.+|++.++.               .|+.
T Consensus       325 kA~~yY-~~s~k~~~d~~-----~l~~~GlgQm~i~~--------~dle~s~~~fEkv~k~---------------~p~~  375 (1018)
T KOG2002|consen  325 KAFKYY-MESLKADNDNF-----VLPLVGLGQMYIKR--------GDLEESKFCFEKVLKQ---------------LPNN  375 (1018)
T ss_pred             HHHHHH-HHHHccCCCCc-----cccccchhHHHHHh--------chHHHHHHHHHHHHHh---------------Ccch
Confidence            888888 77777665541     23467777777766        7788888888777666               2344


Q ss_pred             HHHHHHHHHHHHHcC----CHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000742          166 IDAHNNIGMLQMELD----NLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKK  241 (1313)
Q Consensus       166 ~~~~~~la~~y~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~  241 (1313)
                      ..+...+|.+|...+    ..++|..+..++++.         .+..+.+|..+|.+|....-+.. +.+|.+|+.+...
T Consensus       376 ~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~---------~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~  445 (1018)
T KOG2002|consen  376 YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ---------TPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILES  445 (1018)
T ss_pred             HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc---------ccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHH
Confidence            555666666665554    445555555555554         23355677777777665544444 7777777766665


Q ss_pred             hchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--cCh--------hHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000742          242 IEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSM--EDE--------DALASQIDQNIETVKKAIEVMDELKK  311 (1313)
Q Consensus       242 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~--~~~--------~~~~~~~~~~lg~~~~a~~~~~~a~~  311 (1313)
                      .... --+..++++|..++..|++++|...+.+|+......  .+.        .+.++.++..++++..|-..|..+..
T Consensus       446 ~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk  524 (1018)
T KOG2002|consen  446 KGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK  524 (1018)
T ss_pred             cCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            4443 445677777777777777777777777777663211  111        12223333334444444455555555


Q ss_pred             HHHHHHHHHHHHH---HhhCCchHHHHHHHHH--------------------------------------------HHHH
Q 000742          312 EEQNLKKLTRNMI---IAKGTSQERKYLLQQN--------------------------------------------ASLD  344 (1313)
Q Consensus       312 ~~~~~~~l~~~l~---~~~~~~~~a~~~~~~~--------------------------------------------~~l~  344 (1313)
                      ..+.+...+..++   ..++...++...++.+                                            -++-
T Consensus       525 ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysli  604 (1018)
T KOG2002|consen  525 EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLI  604 (1018)
T ss_pred             HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHH
Confidence            4444443333332   1122233333333332                                            1112


Q ss_pred             HHHHHHHHH-----HHHHHHHHHHHHHHHHHH-HhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchh
Q 000742          345 RLIEKSSMI-----FAWLKHCEYAKRKKRIAS-ELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEG  418 (1313)
Q Consensus       345 ~L~~~~~~~-----~~~~~A~~~~~~a~~i~~-~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~  418 (1313)
                      .||+.+.+.     .+-+++...+.+|++++. .+...|....+-..+|.++...|++.+|+..|.++.+-..      .
T Consensus       605 aLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~------~  678 (1018)
T KOG2002|consen  605 ALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS------D  678 (1018)
T ss_pred             HhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh------h
Confidence            223322111     111234445555555532 3445555556666666666666666666666666554433      2


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhHHHHHH
Q 000742          419 QALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMI  472 (1313)
Q Consensus       419 ~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~~L~~~~~~  472 (1313)
                      ...+|.|+|.||..+|+|-.|++.|+.+++-+.+.+.+    .++..||.++..
T Consensus       679 ~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~----~vl~~Lara~y~  728 (1018)
T KOG2002|consen  679 FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRS----EVLHYLARAWYE  728 (1018)
T ss_pred             CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCH----HHHHHHHHHHHH
Confidence            23457777777777777777777777777665433322    244455555543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.88  E-value=1.1e-20  Score=235.93  Aligned_cols=327  Identities=9%  Similarity=-0.047  Sum_probs=250.2

Q ss_pred             chhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742            4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH   83 (1313)
Q Consensus         4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~   83 (1313)
                      .+|++++|...++.++...|....+  ++.+|......|++++|+..|+++++..|..      ..++..+|.++...|+
T Consensus        54 ~~g~~~~A~~l~~~~l~~~p~~~~~--l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~------~~a~~~la~~l~~~g~  125 (656)
T PRK15174         54 RKDETDVGLTLLSDRVLTAKNGRDL--LRRWVISPLASSQPDAVLQVVNKLLAVNVCQ------PEDVLLVASVLLKSKQ  125 (656)
T ss_pred             hcCCcchhHHHhHHHHHhCCCchhH--HHHHhhhHhhcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCC
Confidence            3578888888888888888887666  8888888888999999999999888876432      6788888999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhH
Q 000742           84 FKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLK  163 (1313)
Q Consensus        84 ~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p  163 (1313)
                      +++|+..+ ++++++.|...      .++..+|.+|...        |++++|+..+++++...               |
T Consensus       126 ~~~Ai~~l-~~Al~l~P~~~------~a~~~la~~l~~~--------g~~~eA~~~~~~~~~~~---------------P  175 (656)
T PRK15174        126 YATVADLA-EQAWLAFSGNS------QIFALHLRTLVLM--------DKELQAISLARTQAQEV---------------P  175 (656)
T ss_pred             HHHHHHHH-HHHHHhCCCcH------HHHHHHHHHHHHC--------CChHHHHHHHHHHHHhC---------------C
Confidence            99999999 88888866543      4577888888877        88888988888766551               1


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000742          164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIE  243 (1313)
Q Consensus       164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~  243 (1313)
                      ....++..++ .+...|++++|+..++++++..+.      .  ....+..++.++...|++++|+..|+++++..+   
T Consensus       176 ~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~------~--~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p---  243 (656)
T PRK15174        176 PRGDMIATCL-SFLNKSRLPEDHDLARALLPFFAL------E--RQESAGLAVDTLCAVGKYQEAIQTGESALARGL---  243 (656)
T ss_pred             CCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCC------c--chhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---
Confidence            2233444443 477889999999888888776321      1  112335667888888999999999999888754   


Q ss_pred             hhhhHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742          244 HCQGEAKGYINLGELHYRVQKYDE----AILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKL  319 (1313)
Q Consensus       244 ~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l  319 (1313)
                         ....++..+|.+|...|++++    |+..|++++++.|.....                                  
T Consensus       244 ---~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a----------------------------------  286 (656)
T PRK15174        244 ---DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRI----------------------------------  286 (656)
T ss_pred             ---CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHH----------------------------------
Confidence               567788889999999998885    788888888887643221                                  


Q ss_pred             HHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHH
Q 000742          320 TRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKA  399 (1313)
Q Consensus       320 ~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A  399 (1313)
                                             +..++..+...+++++|+.++++++.+      .|..+.++..+|.+|...|++++|
T Consensus       287 -----------------------~~~lg~~l~~~g~~~eA~~~l~~al~l------~P~~~~a~~~La~~l~~~G~~~eA  337 (656)
T PRK15174        287 -----------------------VTLYADALIRTGQNEKAIPLLQQSLAT------HPDLPYVRAMYARALRQVGQYTAA  337 (656)
T ss_pred             -----------------------HHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHH
Confidence                                   233444455566677777777777654      355668889999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000742          400 IKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVE  452 (1313)
Q Consensus       400 ~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~  452 (1313)
                      +..|+++++..+      ....++..+|.++...|++++|+..|++++++..+
T Consensus       338 ~~~l~~al~~~P------~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~  384 (656)
T PRK15174        338 SDEFVQLAREKG------VTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS  384 (656)
T ss_pred             HHHHHHHHHhCc------cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence            999999997643      33455667899999999999999999999998654

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.88  E-value=5.8e-19  Score=204.86  Aligned_cols=314  Identities=17%  Similarity=0.196  Sum_probs=257.2

Q ss_pred             HHHHHHHccChHHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhc
Q 000742           74 LGEVYLRLEHFKDALIYQVKKHLELAKD--ASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLK  151 (1313)
Q Consensus        74 lg~~y~~~g~~~~A~~~~~~kal~l~~~--~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~  151 (1313)
                      ++..+...-+.+.....+ .....+..+  .........+...+|..|...        |+|++|+..+++|+++..+..
T Consensus       163 la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~P~~~~~~~~La~~y~~~--------g~~e~A~~l~k~Al~~l~k~~  233 (508)
T KOG1840|consen  163 LADLGGEKQEEDSSIEGT-LKGLDIQAKGLGDEDPERLRTLRNLAEMYAVQ--------GRLEKAEPLCKQALRILEKTS  233 (508)
T ss_pred             HHhhccccccccccchhh-HHHHHHHHHhcccCCchHHHHHHHHHHHHHHh--------ccHHHHHHHHHHHHHHHHHcc
Confidence            444444444443444444 444443322  223344556677799999988        999999999999999976654


Q ss_pred             cCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000742          152 ENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREH  231 (1313)
Q Consensus       152 ~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~  231 (1313)
                      ...       .|.++.....+|.+|..+++|++|+..|++|+.+.+.. .+.+++..+.++.+||.+|...|++++|..+
T Consensus       234 G~~-------hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~-~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~  305 (508)
T KOG1840|consen  234 GLK-------HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV-FGEDHPAVAATLNNLAVLYYKQGKFAEAEEY  305 (508)
T ss_pred             Ccc-------CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHhccCChHHHHHH
Confidence            432       56888888899999999999999999999999998875 4578999999999999999999999999999


Q ss_pred             HHHHHHHHHHh--chhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhH-HHHHHHHhHHHHHHHHHHHHH
Q 000742          232 IEQDIIICKKI--EHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDA-LASQIDQNIETVKKAIEVMDE  308 (1313)
Q Consensus       232 ~~kal~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~-~~~~~~~~lg~~~~a~~~~~~  308 (1313)
                      +++|++|.++.  ..++..+..+.+++.++..++++++|..++++++++..+...... ..+                  
T Consensus       306 ~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a------------------  367 (508)
T KOG1840|consen  306 CERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLA------------------  367 (508)
T ss_pred             HHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHH------------------
Confidence            99999999874  456778889999999999999999999999999998875443322 222                  


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--chhhHHHHHHH
Q 000742          309 LKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCD--KGKLSDSFLVI  386 (1313)
Q Consensus       309 a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~--~~~~a~~~~~l  386 (1313)
                                                      ....+||..+..+|.|.+|.+++++++.+.++...  .......+..+
T Consensus       368 --------------------------------~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~l  415 (508)
T KOG1840|consen  368 --------------------------------KIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQL  415 (508)
T ss_pred             --------------------------------HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHH
Confidence                                            22667788888899999999999999999988765  56678999999


Q ss_pred             HHHHHHhhCHHHHHHHHHHHHHHHHHhCC-chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 000742          387 GESYQKLRKFNKAIKWYTKSWEMYKSIGN-LEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEAN  454 (1313)
Q Consensus       387 g~~y~~~g~~~~A~~~~~kal~l~~~~~~-~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~  454 (1313)
                      |..|.+++++.+|...|..+..+.+..+. .++....|.+||.+|..+|++++|+++.++++...++..
T Consensus       416 a~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~  484 (508)
T KOG1840|consen  416 AEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRL  484 (508)
T ss_pred             HHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999976655 457788899999999999999999999999998876643

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.86  E-value=2.8e-24  Score=238.37  Aligned_cols=271  Identities=24%  Similarity=0.225  Sum_probs=184.2

Q ss_pred             CCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHHH
Q 000742          917 TRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLV  996 (1313)
Q Consensus       917 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~  996 (1313)
                      ..|+.||||+|++..     .+..|..-+++-+|+||+|+|..    ...+.|-++..|-.||||+|++      ..++.
T Consensus       103 ~dLt~lDLShNqL~E-----vP~~LE~AKn~iVLNLS~N~Iet----IPn~lfinLtDLLfLDLS~NrL------e~LPP  167 (1255)
T KOG0444|consen  103 KDLTILDLSHNQLRE-----VPTNLEYAKNSIVLNLSYNNIET----IPNSLFINLTDLLFLDLSNNRL------EMLPP  167 (1255)
T ss_pred             ccceeeecchhhhhh-----cchhhhhhcCcEEEEcccCcccc----CCchHHHhhHhHhhhccccchh------hhcCH
Confidence            566667777776664     45555666666667777776653    1112233445566667777763      33455


Q ss_pred             hhccCCccceeecCCCCCChHHHHHHHHHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHHH
Q 000742          997 KLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIH 1076 (1313)
Q Consensus       997 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 1076 (1313)
                      .+..+..|++|.|++|.+.-..   +.++..+++|++|.+++.+-+-.   .++..+. .+.+|..+|||.|++.-    
T Consensus       168 Q~RRL~~LqtL~Ls~NPL~hfQ---LrQLPsmtsL~vLhms~TqRTl~---N~Ptsld-~l~NL~dvDlS~N~Lp~----  236 (1255)
T KOG0444|consen  168 QIRRLSMLQTLKLSNNPLNHFQ---LRQLPSMTSLSVLHMSNTQRTLD---NIPTSLD-DLHNLRDVDLSENNLPI----  236 (1255)
T ss_pred             HHHHHhhhhhhhcCCChhhHHH---HhcCccchhhhhhhcccccchhh---cCCCchh-hhhhhhhccccccCCCc----
Confidence            5556666777777777654322   22333445577777777643321   1222222 22578899999998876    


Q ss_pred             HHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEccCCCCC
Q 000742         1077 KFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASK 1156 (1313)
Q Consensus      1077 ~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~ 1156 (1313)
                       +++++-.+++|+.|+||+|.|+.... ..... .    +|++|+||.|+++     .+|.++.+++.|+.|.+.+|+++
T Consensus       237 -vPecly~l~~LrrLNLS~N~iteL~~-~~~~W-~----~lEtLNlSrNQLt-----~LP~avcKL~kL~kLy~n~NkL~  304 (1255)
T KOG0444|consen  237 -VPECLYKLRNLRRLNLSGNKITELNM-TEGEW-E----NLETLNLSRNQLT-----VLPDAVCKLTKLTKLYANNNKLT  304 (1255)
T ss_pred             -chHHHhhhhhhheeccCcCceeeeec-cHHHH-h----hhhhhccccchhc-----cchHHHhhhHHHHHHHhccCccc
Confidence             47788889999999999999874322 11221 1    4999999999998     58899999999999999999887


Q ss_pred             hhhhhhhcccccccCCcccccccccccccccccccccccccCCCCcccccccCCccchhhhccccCCCCcccccccCCcc
Q 000742         1157 ELTLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFDNSCTSSCQKNSSF 1236 (1313)
Q Consensus      1157 ~~~~~~~l~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls 1236 (1313)
                      =+|+.                                 +.++.+.+|+++..++|.+.-.+..   .--| ..|++|.|+
T Consensus       305 FeGiP---------------------------------SGIGKL~~Levf~aanN~LElVPEg---lcRC-~kL~kL~L~  347 (1255)
T KOG0444|consen  305 FEGIP---------------------------------SGIGKLIQLEVFHAANNKLELVPEG---LCRC-VKLQKLKLD  347 (1255)
T ss_pred             ccCCc---------------------------------cchhhhhhhHHHHhhccccccCchh---hhhh-HHHHHhccc
Confidence            55443                                 5578888999999999988544332   2233 589999999


Q ss_pred             chhhHHHHHHHHhccccCceecCCCCC
Q 000742         1237 ECQFVQELSSAIGMAKPLQLLDLSNNG 1263 (1313)
Q Consensus      1237 ~n~l~~~l~~~l~~~~~L~~LdLs~N~ 1263 (1313)
                      .|++.. +|++|.-++.|..|||.+|.
T Consensus       348 ~NrLiT-LPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  348 HNRLIT-LPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             ccceee-chhhhhhcCCcceeeccCCc
Confidence            999765 89999999999999999884

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.86  E-value=3.1e-18  Score=198.78  Aligned_cols=282  Identities=17%  Similarity=0.186  Sum_probs=238.0

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000742          162 LKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKK  241 (1313)
Q Consensus       162 ~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~  241 (1313)
                      .|....+..++|..|..+|+|++|+..+++|+++..+. .+-+++..+.....+|.+|..+++|.+|+..|++|+.+.+.
T Consensus       195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~-~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~  273 (508)
T KOG1840|consen  195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKT-SGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE  273 (508)
T ss_pred             CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHc-cCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            45778888889999999999999999999999997653 22456777777778999999999999999999999999987


Q ss_pred             h--chhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742          242 I--EHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKL  319 (1313)
Q Consensus       242 ~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l  319 (1313)
                      .  .+++..+.++.+||.+|...|++++|..++++|+++.........         +                      
T Consensus       274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~---------~----------------------  322 (508)
T KOG1840|consen  274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASH---------P----------------------  322 (508)
T ss_pred             hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCh---------H----------------------
Confidence            7  577889999999999999999999999999999999876222110         0                      


Q ss_pred             HHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHhhCHH
Q 000742          320 TRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASEL--CDKGKLSDSFLVIGESYQKLRKFN  397 (1313)
Q Consensus       320 ~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~--~~~~~~a~~~~~lg~~y~~~g~~~  397 (1313)
                                        +.+..+.+++..+..++.++.|..++++++.+....  .+.+..+.++.+||.+|..+|+|+
T Consensus       323 ------------------~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~  384 (508)
T KOG1840|consen  323 ------------------EVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYK  384 (508)
T ss_pred             ------------------HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchh
Confidence                              111225666777778888889999999998888733  344478899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCC--chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh-hHHHHHHHhhHHHHHHhh
Q 000742          398 KAIKWYTKSWEMYKSIGN--LEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLP-SVQLSALENMHYSHMIRF  474 (1313)
Q Consensus       398 ~A~~~~~kal~l~~~~~~--~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~-~~~~~al~~L~~~~~~~~  474 (1313)
                      +|.++|++|+++..+..+  .+.....+.++|..|.+++++.+|...|.++..|.+..+.. +.....|.+|+..| .+.
T Consensus       385 ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y-~~~  463 (508)
T KOG1840|consen  385 EAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALY-RAQ  463 (508)
T ss_pred             HHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH-HHc
Confidence            999999999999988776  56678899999999999999999999999999999665533 35567999999988 578


Q ss_pred             cCHHHHHHHHHHHHHHHhhh
Q 000742          475 DNIEEARRLQHEIDKLKESK  494 (1313)
Q Consensus       475 ~~~~~a~~~~e~~~~l~~s~  494 (1313)
                      +++++|.++.+.+...++..
T Consensus       464 g~~e~a~~~~~~~~~~~~~~  483 (508)
T KOG1840|consen  464 GNYEAAEELEEKVLNAREQR  483 (508)
T ss_pred             ccHHHHHHHHHHHHHHHHHc
Confidence            89999999999999888665

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=1.3e-18  Score=189.39  Aligned_cols=406  Identities=15%  Similarity=0.073  Sum_probs=293.0

Q ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCH
Q 000742           26 EEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDL  105 (1313)
Q Consensus        26 ~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~  105 (1313)
                      ..|..+...|+-++..|+|++|+++|.+|++..+.      .+..|.+++-||...|++++.++.. .+|+++.|+.   
T Consensus       113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~------epiFYsNraAcY~~lgd~~~Vied~-TkALEl~P~Y---  182 (606)
T KOG0547|consen  113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPD------EPIFYSNRAACYESLGDWEKVIEDC-TKALELNPDY---  182 (606)
T ss_pred             HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCC------CchhhhhHHHHHHHHhhHHHHHHHH-HHHhhcCcHH---
Confidence            34566889999999999999999999999999843      2678999999999999999999999 9999998776   


Q ss_pred             HHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHH------------------HHHH-----HHHH-Hhc-cCCCCCcc-
Q 000742          106 VEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYF------------------KSAM-----KLAQ-TLK-ENPATSRS-  159 (1313)
Q Consensus       106 ~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~------------------~~Al-----~l~~-~~~-~~~~~~~~-  159 (1313)
                         ..+++..+..+..+        |++.+|+...                  ++.+     ..+. .+. +.++...+ 
T Consensus       183 ---~KAl~RRA~A~E~l--------g~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~  251 (606)
T KOG0547|consen  183 ---VKALLRRASAHEQL--------GKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSA  251 (606)
T ss_pred             ---HHHHHHHHHHHHhh--------ccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcH
Confidence               47888888888887        7777775532                  1222     1121 122 12111100 


Q ss_pred             --------hhhHH----------HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhHhhhhcc----CCCchHHHHHHHH
Q 000742          160 --------SFLKE----------YIDAHNNIGMLQMELD---NLEEAKKFLIRGLEICNEEEV----SEDDDGRSRLHHN  214 (1313)
Q Consensus       160 --------~~~p~----------~~~~~~~la~~y~~~g---~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~~  214 (1313)
                              +|.++          .+.+-..-+.-+...+   .|.+|..++.+..........    ...-...+.++..
T Consensus       252 ~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~  331 (606)
T KOG0547|consen  252 TFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLL  331 (606)
T ss_pred             HHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHH
Confidence                    00000          0011111111112222   677777777777655443211    1112445888999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHH
Q 000742          215 LGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQ  294 (1313)
Q Consensus       215 lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~  294 (1313)
                      .|..++..|++-.|.+.|+++|.+.+      .....|+.+|.+|....+.++-..+|.+|..++|...+.++..++++.
T Consensus       332 ~gtF~fL~g~~~~a~~d~~~~I~l~~------~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f  405 (606)
T KOG0547|consen  332 RGTFHFLKGDSLGAQEDFDAAIKLDP------AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF  405 (606)
T ss_pred             hhhhhhhcCCchhhhhhHHHHHhcCc------ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHH
Confidence            99999999999999999999999977      344449999999999999999999999999999999998888888888


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 000742          295 NIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELC  374 (1313)
Q Consensus       295 ~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~  374 (1313)
                      -++++.+|+..|++++...+....                       .+..++......+.++.+...|+.++.-+    
T Consensus       406 lL~q~e~A~aDF~Kai~L~pe~~~-----------------------~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF----  458 (606)
T KOG0547|consen  406 LLQQYEEAIADFQKAISLDPENAY-----------------------AYIQLCCALYRQHKIAESMKTFEEAKKKF----  458 (606)
T ss_pred             HHHHHHHHHHHHHHHhhcChhhhH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhC----
Confidence            888999888888888743333221                       13344444455567777888888776644    


Q ss_pred             CchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHc
Q 000742          375 DKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLD-SNGDWAGALDAFQEGYRIAVEA  453 (1313)
Q Consensus       375 ~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~-~~g~~~~A~~~~~kAl~i~~~~  453 (1313)
                        |..++.|...|.++..+++|++|+++|.+|+++.+......-.+..+.+.|.+.. -.+++..|+..+++|+++..+ 
T Consensus       459 --P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpk-  535 (606)
T KOG0547|consen  459 --PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPK-  535 (606)
T ss_pred             --CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCch-
Confidence              5566999999999999999999999999999998753322222333444444333 247899999999999988533 


Q ss_pred             CChhHHHHHHHhhHHHHHHhhcCHHHHHHHHHHHHHHHhhh
Q 000742          454 NLPSVQLSALENMHYSHMIRFDNIEEARRLQHEIDKLKESK  494 (1313)
Q Consensus       454 ~~~~~~~~al~~L~~~~~~~~~~~~~a~~~~e~~~~l~~s~  494 (1313)
                           ...|+..||.+.. +.++.++|.++.+....|.++.
T Consensus       536 -----ce~A~~tlaq~~l-Q~~~i~eAielFEksa~lArt~  570 (606)
T KOG0547|consen  536 -----CEQAYETLAQFEL-QRGKIDEAIELFEKSAQLARTE  570 (606)
T ss_pred             -----HHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHhH
Confidence                 4568889998765 4567888999999888888776

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.84  E-value=8.4e-23  Score=226.80  Aligned_cols=342  Identities=18%  Similarity=0.145  Sum_probs=233.0

Q ss_pred             CCcCEEEecCCCCCHHH-HHHHHHHHHhcccCccceEEEccCCCCCHHHHHHHHhcccCCCCcCEEEecCCCCChhHHHH
Q 000742          858 KTVALLDLSHNLLGNGT-MEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSY  936 (1313)
Q Consensus       858 ~~L~~L~Ls~n~l~~~~-~~~L~~~l~~~~~~~~l~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~  936 (1313)
                      +-++-+|+++|.++... ......       +.++++|.|...++...+ ..++.    +.+|++|.+++|++..     
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~q-------Mt~~~WLkLnrt~L~~vP-eEL~~----lqkLEHLs~~HN~L~~-----   69 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQ-------MTQMTWLKLNRTKLEQVP-EELSR----LQKLEHLSMAHNQLIS-----   69 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHH-------hhheeEEEechhhhhhCh-HHHHH----HhhhhhhhhhhhhhHh-----
Confidence            45566677777765321 111111       233456666555443222 23333    3678888888887764     


Q ss_pred             HHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHHHhhccCCccceeecCCCCCCh
Q 000742          937 LSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSK 1016 (1313)
Q Consensus       937 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~ 1016 (1313)
                      +...|..++.|+.+.+..|++...|+   +.-+..+..|+.||||+|.      +.+.+..+..-+++-.|+||+|+|..
T Consensus        70 vhGELs~Lp~LRsv~~R~N~LKnsGi---P~diF~l~dLt~lDLShNq------L~EvP~~LE~AKn~iVLNLS~N~Iet  140 (1255)
T KOG0444|consen   70 VHGELSDLPRLRSVIVRDNNLKNSGI---PTDIFRLKDLTILDLSHNQ------LREVPTNLEYAKNSIVLNLSYNNIET  140 (1255)
T ss_pred             hhhhhccchhhHHHhhhccccccCCC---Cchhcccccceeeecchhh------hhhcchhhhhhcCcEEEEcccCcccc
Confidence            44456667777888887777765443   2334567778888888887      34566666677778888888888755


Q ss_pred             HHHHHHHHHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHHHHHHHHHhcCCCccEEEccCC
Q 000742         1017 PVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGN 1096 (1313)
Q Consensus      1017 ~~~~~l~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N 1096 (1313)
                      ..-..+.++.   .|-.||||+|.+..     +++-+. .+..|++|+|++|.+.......    +..+++|+.|.+|+.
T Consensus       141 IPn~lfinLt---DLLfLDLS~NrLe~-----LPPQ~R-RL~~LqtL~Ls~NPL~hfQLrQ----LPsmtsL~vLhms~T  207 (1255)
T KOG0444|consen  141 IPNSLFINLT---DLLFLDLSNNRLEM-----LPPQIR-RLSMLQTLKLSNNPLNHFQLRQ----LPSMTSLSVLHMSNT  207 (1255)
T ss_pred             CCchHHHhhH---hHhhhccccchhhh-----cCHHHH-HHhhhhhhhcCCChhhHHHHhc----Cccchhhhhhhcccc
Confidence            4333333343   37788888888743     333333 2357889999999887664433    346778888888887


Q ss_pred             CCC-hHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEccCCCCChh--hhhhhcccccccCCc
Q 000742         1097 PIM-KEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKEL--TLQQNLSSVNSENLQ 1173 (1313)
Q Consensus      1097 ~i~-~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~--~~~~~l~~l~~~~l~ 1173 (1313)
                      +-+ +..+..+-. +.    +|..+|||.|.+.     .+|..+.+.++|+.|+||+|.|+..  +...- ..|.+++|+
T Consensus       208 qRTl~N~Ptsld~-l~----NL~dvDlS~N~Lp-----~vPecly~l~~LrrLNLS~N~iteL~~~~~~W-~~lEtLNlS  276 (1255)
T KOG0444|consen  208 QRTLDNIPTSLDD-LH----NLRDVDLSENNLP-----IVPECLYKLRNLRRLNLSGNKITELNMTEGEW-ENLETLNLS  276 (1255)
T ss_pred             cchhhcCCCchhh-hh----hhhhccccccCCC-----cchHHHhhhhhhheeccCcCceeeeeccHHHH-hhhhhhccc
Confidence            643 222333322 22    4899999999987     4788999999999999999999877  23333 567789999


Q ss_pred             ccccccccccccccccccccccccCCCCcccccccCCccchhhhccccCCCCc-ccccccCCccchhhHHHHHHHHhccc
Q 000742         1174 PALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFDNSC-TSSCQKNSSFECQFVQELSSAIGMAK 1252 (1313)
Q Consensus      1174 ~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~-~~~L~~L~Ls~n~l~~~l~~~l~~~~ 1252 (1313)
                      .|+++.+|             ..++.++.|+.|.+.+|+++...-+   ...+ ...|+.+..++|.+ .-+|+.|+.|+
T Consensus       277 rNQLt~LP-------------~avcKL~kL~kLy~n~NkL~FeGiP---SGIGKL~~Levf~aanN~L-ElVPEglcRC~  339 (1255)
T KOG0444|consen  277 RNQLTVLP-------------DAVCKLTKLTKLYANNNKLTFEGIP---SGIGKLIQLEVFHAANNKL-ELVPEGLCRCV  339 (1255)
T ss_pred             cchhccch-------------HHHhhhHHHHHHHhccCcccccCCc---cchhhhhhhHHHHhhcccc-ccCchhhhhhH
Confidence            99999988             5678899999999999999765322   2222 23888888888875 55799999999


Q ss_pred             cCceecCCCCCCCH
Q 000742         1253 PLQLLDLSNNGFST 1266 (1313)
Q Consensus      1253 ~L~~LdLs~N~l~~ 1266 (1313)
                      .|+.|.|+.|++-.
T Consensus       340 kL~kL~L~~NrLiT  353 (1255)
T KOG0444|consen  340 KLQKLKLDHNRLIT  353 (1255)
T ss_pred             HHHHhcccccceee
Confidence            99999999998754

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.84  E-value=2.6e-18  Score=178.69  Aligned_cols=406  Identities=15%  Similarity=0.135  Sum_probs=267.9

Q ss_pred             HhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Q 000742           20 EEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELA   99 (1313)
Q Consensus        20 ~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~   99 (1313)
                      +......++.-.+.+|..++..|++..|+..|..|++..+..      ..+++..|.+|..+|+-..|+..+ .+++++.
T Consensus        30 ~~~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~------Y~aifrRaT~yLAmGksk~al~Dl-~rVlelK  102 (504)
T KOG0624|consen   30 ESTASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN------YQAIFRRATVYLAMGKSKAALQDL-SRVLELK  102 (504)
T ss_pred             HhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh------HHHHHHHHHHHhhhcCCccchhhH-HHHHhcC
Confidence            344555666678899999999999999999999999877543      889999999999999999999999 9999998


Q ss_pred             HHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcch-hhHHHHHHHHHHHHHHHH
Q 000742          100 KDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSS-FLKEYIDAHNNIGMLQME  178 (1313)
Q Consensus       100 ~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~-~~p~~~~~~~~la~~y~~  178 (1313)
                      |+..      .+....|.++..+        |++++|+..|++.++.-...+.... ..+. ........+......++.
T Consensus       103 pDF~------~ARiQRg~vllK~--------Gele~A~~DF~~vl~~~~s~~~~~e-aqskl~~~~e~~~l~~ql~s~~~  167 (504)
T KOG0624|consen  103 PDFM------AARIQRGVVLLKQ--------GELEQAEADFDQVLQHEPSNGLVLE-AQSKLALIQEHWVLVQQLKSASG  167 (504)
T ss_pred             ccHH------HHHHHhchhhhhc--------ccHHHHHHHHHHHHhcCCCcchhHH-HHHHHHhHHHHHHHHHHHHHHhc
Confidence            7763      4567889999887        9999999999998865321110000 0000 000112233444556677


Q ss_pred             cCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHH
Q 000742          179 LDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGEL  258 (1313)
Q Consensus       179 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~  258 (1313)
                      .|++..|+++..+.+++         .++.+..+...+.+|...|+..+|+..++.+-++..      +....++.++.+
T Consensus       168 ~GD~~~ai~~i~~llEi---------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~------DnTe~~ykis~L  232 (504)
T KOG0624|consen  168 SGDCQNAIEMITHLLEI---------QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ------DNTEGHYKISQL  232 (504)
T ss_pred             CCchhhHHHHHHHHHhc---------CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc------cchHHHHHHHHH
Confidence            89999999999999988         566788999999999999999999999999988865      778899999999


Q ss_pred             HHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHH
Q 000742          259 HYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQ  338 (1313)
Q Consensus       259 ~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~  338 (1313)
                      ++..|+.+.++...++++++.|+...-+.    .|-.+..+.+.+..++++                             
T Consensus       233 ~Y~vgd~~~sL~~iRECLKldpdHK~Cf~----~YKklkKv~K~les~e~~-----------------------------  279 (504)
T KOG0624|consen  233 LYTVGDAENSLKEIRECLKLDPDHKLCFP----FYKKLKKVVKSLESAEQA-----------------------------  279 (504)
T ss_pred             HHhhhhHHHHHHHHHHHHccCcchhhHHH----HHHHHHHHHHHHHHHHHH-----------------------------
Confidence            99999999999999999999987653211    122222222222222222                             


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchh
Q 000742          339 QNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEG  418 (1313)
Q Consensus       339 ~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~  418 (1313)
                                  ...+.|.++++-.++.+....+.  .+.....+..+..+|..-+++-+|+..+.+++++.+      .
T Consensus       280 ------------ie~~~~t~cle~ge~vlk~ep~~--~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~------~  339 (504)
T KOG0624|consen  280 ------------IEEKHWTECLEAGEKVLKNEPEE--TMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP------D  339 (504)
T ss_pred             ------------HhhhhHHHHHHHHHHHHhcCCcc--cceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc------h
Confidence                        12334444444444443322211  111223444456666666666666666666665533      4


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-------------------------------cCChhHHHHHHHhhH
Q 000742          419 QALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVE-------------------------------ANLPSVQLSALENMH  467 (1313)
Q Consensus       419 ~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~-------------------------------~~~~~~~~~al~~L~  467 (1313)
                      .+.++...|.+|.-...|+.|+..|++|.++...                               .........||+.|+
T Consensus       340 dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kRDYYKILGVkRnAsKqEI~KAYRKlA  419 (504)
T KOG0624|consen  340 DVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGKRDYYKILGVKRNASKQEITKAYRKLA  419 (504)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccchHHHHhhhcccccHHHHHHHHHHHH
Confidence            4556666666666666666666666666542110                               112334457888888


Q ss_pred             HHHHH-hhcCHHHHHHHHHHHH---HHHhhh-ccchhhhcccCccccCCCCCCCCCCCCCCCCC
Q 000742          468 YSHMI-RFDNIEEARRLQHEID---KLKESK-SEDLEAYDVARDCCSETDTEGNDHLPDVRSSA  526 (1313)
Q Consensus       468 ~~~~~-~~~~~~~a~~~~e~~~---~l~~s~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  526 (1313)
                      .-++. -+.+.++-..-.....   .-++.. ++|.+.++           |.|+||-||+++.
T Consensus       420 qkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqF-----------DnGeDPLD~Es~q  472 (504)
T KOG0624|consen  420 QKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQF-----------DNGEDPLDPESQQ  472 (504)
T ss_pred             HhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhc-----------cCCCCCCChhhcc
Confidence            87775 3444443222222222   222222 34555555           7777777777665

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.82  E-value=1.8e-19  Score=205.00  Aligned_cols=307  Identities=14%  Similarity=0.110  Sum_probs=180.8

Q ss_pred             HHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHH
Q 000742           29 RWANVIGDILKNR--GEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLV  106 (1313)
Q Consensus        29 ~~~~~lg~~y~~~--g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~  106 (1313)
                      ..+..+|..|...  -+..+|+..|.+ +   +.+...  ...++..+|..|+++++|++|..+| +.+-++.|-.-+..
T Consensus       318 ~llr~~~~~~~~~s~y~~~~A~~~~~k-l---p~h~~n--t~wvl~q~GrayFEl~~Y~~a~~~F-~~~r~~~p~rv~~m  390 (638)
T KOG1126|consen  318 ELLRGLGEGYRSLSQYNCREALNLFEK-L---PSHHYN--TGWVLSQLGRAYFELIEYDQAERIF-SLVRRIEPYRVKGM  390 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-h---HHhcCC--chHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccccccch
Confidence            3455555555433  345677777776 2   111121  2466677777777777777777777 66666554321111


Q ss_pred             HHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHH
Q 000742          107 EQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAK  186 (1313)
Q Consensus       107 ~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~  186 (1313)
                         .   ....++..+         +-+-++.++-+-  +...            .|.-+++|..+|.+|-.+++++.|+
T Consensus       391 ---e---iyST~LWHL---------q~~v~Ls~Laq~--Li~~------------~~~sPesWca~GNcfSLQkdh~~Ai  441 (638)
T KOG1126|consen  391 ---E---IYSTTLWHL---------QDEVALSYLAQD--LIDT------------DPNSPESWCALGNCFSLQKDHDTAI  441 (638)
T ss_pred             ---h---HHHHHHHHH---------HhhHHHHHHHHH--HHhh------------CCCCcHHHHHhcchhhhhhHHHHHH
Confidence               0   111111111         111222222221  1111            1233566777777777777777777


Q ss_pred             HHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHH
Q 000742          187 KFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYD  266 (1313)
Q Consensus       187 ~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  266 (1313)
                      +.|++|+++         ++..+.+|..+|.-+....++|+|..+|++|+...+      ....+|+.+|.+|.++++++
T Consensus       442 k~f~RAiQl---------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~------rhYnAwYGlG~vy~Kqek~e  506 (638)
T KOG1126|consen  442 KCFKRAIQL---------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP------RHYNAWYGLGTVYLKQEKLE  506 (638)
T ss_pred             HHHHHhhcc---------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc------hhhHHHHhhhhheeccchhh
Confidence            777777666         444566677777777777777777777777776655      55667777777777777777


Q ss_pred             HHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHH
Q 000742          267 EAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRL  346 (1313)
Q Consensus       267 ~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L  346 (1313)
                      .|.-+|++|+++.|.........+.++..+|..++|+..|++|..                                   
T Consensus       507 ~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~-----------------------------------  551 (638)
T KOG1126|consen  507 FAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH-----------------------------------  551 (638)
T ss_pred             HHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh-----------------------------------
Confidence            777777777777666555555556666777777777777666541                                   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Q 000742          347 IEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNM  426 (1313)
Q Consensus       347 ~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~l  426 (1313)
                                                  ..+..+-.-+..|.++..+++|++|+..+++.-++.+      +++.+++.+
T Consensus       552 ----------------------------ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP------~es~v~~ll  597 (638)
T KOG1126|consen  552 ----------------------------LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVP------QESSVFALL  597 (638)
T ss_pred             ----------------------------cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCc------chHHHHHHH
Confidence                                        1223334444566666666777777766666665543      566666677


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 000742          427 GNVLDSNGDWAGALDAFQEGYRIAVEANL  455 (1313)
Q Consensus       427 g~~y~~~g~~~~A~~~~~kAl~i~~~~~~  455 (1313)
                      |.+|.++|+.+.|+..|--|..+..+..+
T Consensus       598 gki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  598 GKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             HHHHHHHccchHHHHhhHHHhcCCCccch
Confidence            77777777777777777776666666444

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.82  E-value=2e-18  Score=215.77  Aligned_cols=294  Identities=10%  Similarity=0.013  Sum_probs=232.8

Q ss_pred             chhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742            4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH   83 (1313)
Q Consensus         4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~   83 (1313)
                      ..|++++|+..|+++++..|....+  +..+|.++...|++++|+..|++++++.+      ....++..+|.++...|+
T Consensus        88 ~~g~~~~A~~~l~~~l~~~P~~~~a--~~~la~~l~~~g~~~~Ai~~l~~Al~l~P------~~~~a~~~la~~l~~~g~  159 (656)
T PRK15174         88 ASSQPDAVLQVVNKLLAVNVCQPED--VLLVASVLLKSKQYATVADLAEQAWLAFS------GNSQIFALHLRTLVLMDK  159 (656)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCChHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHCCC
Confidence            4689999999999999999998777  88999999999999999999999998863      337889999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhH
Q 000742           84 FKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLK  163 (1313)
Q Consensus        84 ~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p  163 (1313)
                      +++|+..+ ++++...|....      ++..++ .+...        |++++|+..++++++...    .          
T Consensus       160 ~~eA~~~~-~~~~~~~P~~~~------a~~~~~-~l~~~--------g~~~eA~~~~~~~l~~~~----~----------  209 (656)
T PRK15174        160 ELQAISLA-RTQAQEVPPRGD------MIATCL-SFLNK--------SRLPEDHDLARALLPFFA----L----------  209 (656)
T ss_pred             hHHHHHHH-HHHHHhCCCCHH------HHHHHH-HHHHc--------CCHHHHHHHHHHHHhcCC----C----------
Confidence            99999999 988877665432      233333 35555        999999999998876521    0          


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHH
Q 000742          164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDK----SREHIEQDIIIC  239 (1313)
Q Consensus       164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~----A~~~~~kal~~~  239 (1313)
                      .....+..++.++...|++++|+..|+++++..         +....++.++|.+|...|++++    |+.+|++++++.
T Consensus       210 ~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~---------p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~  280 (656)
T PRK15174        210 ERQESAGLAVDTLCAVGKYQEAIQTGESALARG---------LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN  280 (656)
T ss_pred             cchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence            112344567889999999999999999999873         3346788999999999999996    899999999987


Q ss_pred             HHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742          240 KKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKL  319 (1313)
Q Consensus       240 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l  319 (1313)
                      |      ....++..+|.++...|++++|+.++++++++.|........+                              
T Consensus       281 P------~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~L------------------------------  324 (656)
T PRK15174        281 S------DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMY------------------------------  324 (656)
T ss_pred             C------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH------------------------------
Confidence            6      6788999999999999999999999999999877644322222                              


Q ss_pred             HHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHH
Q 000742          320 TRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKA  399 (1313)
Q Consensus       320 ~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A  399 (1313)
                                                 +..+...+++++|+..+++++..      .|..+..+..+|.++...|++++|
T Consensus       325 ---------------------------a~~l~~~G~~~eA~~~l~~al~~------~P~~~~~~~~~a~al~~~G~~deA  371 (656)
T PRK15174        325 ---------------------------ARALRQVGQYTAASDEFVQLARE------KGVTSKWNRYAAAALLQAGKTSEA  371 (656)
T ss_pred             ---------------------------HHHHHHCCCHHHHHHHHHHHHHh------CccchHHHHHHHHHHHHCCCHHHH
Confidence                                       22333344455555555555442      233445666779999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 000742          400 IKWYTKSWEMYKSI  413 (1313)
Q Consensus       400 ~~~~~kal~l~~~~  413 (1313)
                      +.+|+++++..+..
T Consensus       372 ~~~l~~al~~~P~~  385 (656)
T PRK15174        372 ESVFEHYIQARASH  385 (656)
T ss_pred             HHHHHHHHHhChhh
Confidence            99999999987753

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.82  E-value=3.4e-19  Score=190.59  Aligned_cols=376  Identities=15%  Similarity=0.140  Sum_probs=248.5

Q ss_pred             hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHH
Q 000742            7 QMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKD   86 (1313)
Q Consensus         7 ~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~   86 (1313)
                      .+.+|+..|+..++..--+.....-.++|++|+...+|.+|+++|+.|+...+.. .......++.++|..+.+.|.|+.
T Consensus       216 m~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsi-nk~~rikil~nigvtfiq~gqy~d  294 (840)
T KOG2003|consen  216 MTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSI-NKDMRIKILNNIGVTFIQAGQYDD  294 (840)
T ss_pred             HHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhcccc-chhhHHHHHhhcCeeEEecccchh
Confidence            3456666666665543222223335589999999999999999999999988765 334457899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHH--------------------
Q 000742           87 ALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKL--------------------  146 (1313)
Q Consensus        87 A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l--------------------  146 (1313)
                      |+..| +..++.+|+...       -+++-.+++.+        |+-++-.+.|++.+.+                    
T Consensus       295 ainsf-dh~m~~~pn~~a-------~~nl~i~~f~i--------~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l  358 (840)
T KOG2003|consen  295 AINSF-DHCMEEAPNFIA-------ALNLIICAFAI--------GDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL  358 (840)
T ss_pred             hHhhH-HHHHHhCccHHh-------hhhhhhhheec--------CcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence            99999 999998887643       33444444443        3333333333333222                    


Q ss_pred             ---------------------------HHHhccCCCCC--------------cchhhHHHHHHHHHHHHHHHHcCCHHHH
Q 000742          147 ---------------------------AQTLKENPATS--------------RSSFLKEYIDAHNNIGMLQMELDNLEEA  185 (1313)
Q Consensus       147 ---------------------------~~~~~~~~~~~--------------~~~~~p~~~~~~~~la~~y~~~g~~~~A  185 (1313)
                                                 ..++-.+....              .+.+.|.....-.+.|..|.+.|+++.|
T Consensus       359 l~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a  438 (840)
T KOG2003|consen  359 LNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA  438 (840)
T ss_pred             HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence                                       11110000000              0011122223344567778889999999


Q ss_pred             HHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhc
Q 000742          186 KKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELR--MWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQ  263 (1313)
Q Consensus       186 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g--~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g  263 (1313)
                      ++.++-.    .+    .+......+-.+|..+++.+|  ++..|..|...|+.+.+      ..+.++.+.|.+-+..|
T Consensus       439 ieilkv~----~~----kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr------yn~~a~~nkgn~~f~ng  504 (840)
T KOG2003|consen  439 IEILKVF----EK----KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR------YNAAALTNKGNIAFANG  504 (840)
T ss_pred             HHHHHHH----Hh----ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc------cCHHHhhcCCceeeecC
Confidence            8876433    22    334445566778877777744  89999999999999877      78889999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHH
Q 000742          264 KYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASL  343 (1313)
Q Consensus       264 ~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l  343 (1313)
                      ++++|.++|++|+.-+...       ..+++++|-.+++++.++++.+.+-++..+.                .+.+..+
T Consensus       505 d~dka~~~ykeal~ndasc-------~ealfniglt~e~~~~ldeald~f~klh~il----------------~nn~evl  561 (840)
T KOG2003|consen  505 DLDKAAEFYKEALNNDASC-------TEALFNIGLTAEALGNLDEALDCFLKLHAIL----------------LNNAEVL  561 (840)
T ss_pred             cHHHHHHHHHHHHcCchHH-------HHHHHHhcccHHHhcCHHHHHHHHHHHHHHH----------------HhhHHHH
Confidence            9999999999999765432       3477889999999999998887776665542                2344556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHH
Q 000742          344 DRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAK  423 (1313)
Q Consensus       344 ~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~  423 (1313)
                      -.++.+|..+.+..+|++++.++..+.      |..+.++..+|.+|-+.|+..+|..++-.....++      ....+.
T Consensus       562 ~qianiye~led~aqaie~~~q~~sli------p~dp~ilskl~dlydqegdksqafq~~ydsyryfp------~nie~i  629 (840)
T KOG2003|consen  562 VQIANIYELLEDPAQAIELLMQANSLI------PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFP------CNIETI  629 (840)
T ss_pred             HHHHHHHHHhhCHHHHHHHHHHhcccC------CCCHHHHHHHHHHhhcccchhhhhhhhhhcccccC------cchHHH
Confidence            677777777778888887777765432      44446666666666666666666665544443332      333444


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Q 000742          424 VNMGNVLDSNGDWAGALDAFQEGYR  448 (1313)
Q Consensus       424 ~~lg~~y~~~g~~~~A~~~~~kAl~  448 (1313)
                      .++|..|....-+++|+.||++|.-
T Consensus       630 ewl~ayyidtqf~ekai~y~ekaal  654 (840)
T KOG2003|consen  630 EWLAAYYIDTQFSEKAINYFEKAAL  654 (840)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHh
Confidence            5555555555555566666555543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.81  E-value=9.5e-18  Score=214.34  Aligned_cols=410  Identities=10%  Similarity=0.020  Sum_probs=291.1

Q ss_pred             chhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742            4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH   83 (1313)
Q Consensus         4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~   83 (1313)
                      ..|+.++|++.+.++....+....+  +..+|.++...|++++|+..|+++++..+.      ...++..+|.++...|+
T Consensus        27 ~~g~~~~A~~~~~~~~~~~~~~a~~--~~~lA~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~la~~l~~~g~   98 (765)
T PRK10049         27 WAGQDAEVITVYNRYRVHMQLPARG--YAAVAVAYRNLKQWQNSLTLWQKALSLEPQ------NDDYQRGLILTLADAGQ   98 (765)
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCC
Confidence            3578999999999998877776555  889999999999999999999999988632      26778899999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhH
Q 000742           84 FKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLK  163 (1313)
Q Consensus        84 ~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p  163 (1313)
                      +++|+.++ +++++..|...      . +..+|.++...        |++++|+..++++++.               .|
T Consensus        99 ~~eA~~~l-~~~l~~~P~~~------~-~~~la~~l~~~--------g~~~~Al~~l~~al~~---------------~P  147 (765)
T PRK10049         99 YDEALVKA-KQLVSGAPDKA------N-LLALAYVYKRA--------GRHWDELRAMTQALPR---------------AP  147 (765)
T ss_pred             HHHHHHHH-HHHHHhCCCCH------H-HHHHHHHHHHC--------CCHHHHHHHHHHHHHh---------------CC
Confidence            99999999 99999876553      3 67889999887        9999999999999998               34


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHH-----HHcCCH---HHHHHHHHHH
Q 000742          164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVY-----MELRMW---DKSREHIEQD  235 (1313)
Q Consensus       164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y-----~~~g~~---~~A~~~~~ka  235 (1313)
                      ....++..+|.++...+..++|+..++++.. .+..    ...........+..++     ...+++   ++|++.++++
T Consensus       148 ~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~----~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~l  222 (765)
T PRK10049        148 QTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAE----KRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDAL  222 (765)
T ss_pred             CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHH----HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHH
Confidence            5577888899999999999999999987765 2210    0000111122222222     223345   7889999988


Q ss_pred             HHHHHHhch-hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccC-hhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000742          236 IIICKKIEH-CQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMED-EDALASQIDQNIETVKKAIEVMDELKKEE  313 (1313)
Q Consensus       236 l~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~-~~~~~~~~~~~lg~~~~a~~~~~~a~~~~  313 (1313)
                      ++..+...+ .+....+......++...|++++|+..|+++++..+..+. .....+.++..+|++.+|+..|+++....
T Consensus       223 l~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~  302 (765)
T PRK10049        223 EALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHP  302 (765)
T ss_pred             HhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcC
Confidence            877554322 2334445444233446779999999999998877432222 12224556667777777776666554211


Q ss_pred             HHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCch--hhHHHHH
Q 000742          314 QNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASEL-------CDKG--KLSDSFL  384 (1313)
Q Consensus       314 ~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~-------~~~~--~~a~~~~  384 (1313)
                      +             ......      ......++..+...+++++|..+++++.......       ...|  ....++.
T Consensus       303 p-------------~~~~~~------~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~  363 (765)
T PRK10049        303 E-------------TIADLS------DEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQS  363 (765)
T ss_pred             C-------------CCCCCC------hHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHH
Confidence            0             000000      0113445556678899999999988887653210       1111  2346778


Q ss_pred             HHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 000742          385 VIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALE  464 (1313)
Q Consensus       385 ~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~  464 (1313)
                      .+|.++...|++++|+..+++++...|      ....++..+|.++...|++++|+..+++|+++.  +++    ..++.
T Consensus       364 ~~a~~l~~~g~~~eA~~~l~~al~~~P------~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~----~~l~~  431 (765)
T PRK10049        364 LLSQVAKYSNDLPQAEMRARELAYNAP------GNQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRN----INLEV  431 (765)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCC----hHHHH
Confidence            899999999999999999999997754      556789999999999999999999999999975  222    23555


Q ss_pred             hhHHHHHHhhcCHHHHHHHHHHHHH
Q 000742          465 NMHYSHMIRFDNIEEARRLQHEIDK  489 (1313)
Q Consensus       465 ~L~~~~~~~~~~~~~a~~~~e~~~~  489 (1313)
                      .++..+. ..++.++|....+.+..
T Consensus       432 ~~a~~al-~~~~~~~A~~~~~~ll~  455 (765)
T PRK10049        432 EQAWTAL-DLQEWRQMDVLTDDVVA  455 (765)
T ss_pred             HHHHHHH-HhCCHHHHHHHHHHHHH
Confidence            6666543 44556666666555544

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.80  E-value=4.8e-17  Score=194.10  Aligned_cols=211  Identities=13%  Similarity=0.080  Sum_probs=171.3

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHH
Q 000742           28 ARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVE  107 (1313)
Q Consensus        28 a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~  107 (1313)
                      +...+..|..+...|++++|+..|+++++..+      ....++..+|.+|...|++++|+.++ ++++....  .....
T Consensus        35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~-~~~l~~~~--~~~~~  105 (389)
T PRK11788         35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDP------ETVELHLALGNLFRRRGEVDRAIRIH-QNLLSRPD--LTREQ  105 (389)
T ss_pred             ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCc------ccHHHHHHHHHHHHHcCcHHHHHHHH-HHHhcCCC--CCHHH
Confidence            34466789999999999999999999998753      23678999999999999999999999 88876321  12223


Q ss_pred             HHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHH
Q 000742          108 QQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKK  187 (1313)
Q Consensus       108 ~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~  187 (1313)
                      ...++..+|.+|...        |++++|+.+|+++++.               .|....++..++.++...|++++|++
T Consensus       106 ~~~~~~~La~~~~~~--------g~~~~A~~~~~~~l~~---------------~~~~~~~~~~la~~~~~~g~~~~A~~  162 (389)
T PRK11788        106 RLLALQELGQDYLKA--------GLLDRAEELFLQLVDE---------------GDFAEGALQQLLEIYQQEKDWQKAID  162 (389)
T ss_pred             HHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHcC---------------CcchHHHHHHHHHHHHHhchHHHHHH
Confidence            346788999999987        9999999999998865               12346788999999999999999999


Q ss_pred             HHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHH
Q 000742          188 FLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDE  267 (1313)
Q Consensus       188 ~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  267 (1313)
                      .++++++..+.    .........+..+|.++...|++++|+.+|+++++..+      ....++..+|.+|...|++++
T Consensus       163 ~~~~~~~~~~~----~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~  232 (389)
T PRK11788        163 VAERLEKLGGD----SLRVEIAHFYCELAQQALARGDLDAARALLKKALAADP------QCVRASILLGDLALAQGDYAA  232 (389)
T ss_pred             HHHHHHHhcCC----cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc------CCHHHHHHHHHHHHHCCCHHH
Confidence            99998876433    11223455678899999999999999999999998765      456788899999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 000742          268 AILCYQKALNLAQ  280 (1313)
Q Consensus       268 A~~~~~kal~~~~  280 (1313)
                      |+++++++++..+
T Consensus       233 A~~~~~~~~~~~p  245 (389)
T PRK11788        233 AIEALERVEEQDP  245 (389)
T ss_pred             HHHHHHHHHHHCh
Confidence            9999999987644

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.78  E-value=5.2e-17  Score=207.57  Aligned_cols=390  Identities=10%  Similarity=-0.069  Sum_probs=269.9

Q ss_pred             chhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742            4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH   83 (1313)
Q Consensus         4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~   83 (1313)
                      ..+++++|.+.|+++++..|....+  +..+|.++...|++++|+..++++++..+.      ... +..+|.++...|+
T Consensus        61 ~~g~~~~A~~~~~~al~~~P~~~~a--~~~la~~l~~~g~~~eA~~~l~~~l~~~P~------~~~-~~~la~~l~~~g~  131 (765)
T PRK10049         61 NLKQWQNSLTLWQKALSLEPQNDDY--QRGLILTLADAGQYDEALVKAKQLVSGAPD------KAN-LLALAYVYKRAGR  131 (765)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHH-HHHHHHHHHHCCC
Confidence            5688999999999999999987776  779999999999999999999999988632      255 8899999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhH
Q 000742           84 FKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLK  163 (1313)
Q Consensus        84 ~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p  163 (1313)
                      +++|+..+ ++++++.|+..      .++..+|.++...        +..++|+..++++... ......     ....+
T Consensus       132 ~~~Al~~l-~~al~~~P~~~------~~~~~la~~l~~~--------~~~e~Al~~l~~~~~~-p~~~~~-----l~~~~  190 (765)
T PRK10049        132 HWDELRAM-TQALPRAPQTQ------QYPTEYVQALRNN--------RLSAPALGAIDDANLT-PAEKRD-----LEADA  190 (765)
T ss_pred             HHHHHHHH-HHHHHhCCCCH------HHHHHHHHHHHHC--------CChHHHHHHHHhCCCC-HHHHHH-----HHHHH
Confidence            99999999 99999988764      3456778888766        8888898888765531 100000     00001


Q ss_pred             HHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742          164 EYIDAHNNIGMLQMELDNL---EEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK  240 (1313)
Q Consensus       164 ~~~~~~~~la~~y~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~  240 (1313)
                      ....+...++..+...+++   ++|++.++++++..+..  ....+....+......++...|++++|+..|+++++..+
T Consensus       191 ~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~--p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~  268 (765)
T PRK10049        191 AAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDN--PDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQ  268 (765)
T ss_pred             HHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccC--CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCC
Confidence            1111111122222233445   78999999998775442  122233444544423344677999999999999877632


Q ss_pred             HhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccC----hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000742          241 KIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMED----EDALASQIDQNIETVKKAIEVMDELKKEEQNL  316 (1313)
Q Consensus       241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~----~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~  316 (1313)
                         ..+..+.  ..+|.+|..+|++++|+.+|+++++..+....    ....+..++...+.+.+|+..++++....+..
T Consensus       269 ---~~P~~a~--~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~  343 (765)
T PRK10049        269 ---IIPPWAQ--RWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPF  343 (765)
T ss_pred             ---CCCHHHH--HHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCce
Confidence               1123333  33689999999999999999999876543311    11222334556666666666666554221110


Q ss_pred             HHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCH
Q 000742          317 KKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKF  396 (1313)
Q Consensus       317 ~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~  396 (1313)
                      ..+.   ......++..     ....+..++..+...+++++|++.+++++...      |....++..+|.++...|++
T Consensus       344 ~~~~---~~~~~~p~~~-----~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~------P~n~~l~~~lA~l~~~~g~~  409 (765)
T PRK10049        344 LRLY---GSPTSIPNDD-----WLQGQSLLSQVAKYSNDLPQAEMRARELAYNA------PGNQGLRIDYASVLQARGWP  409 (765)
T ss_pred             Eeec---CCCCCCCCch-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHhcCCH
Confidence            0000   0001111110     01123455667778899999999998887653      55578999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000742          397 NKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIA  450 (1313)
Q Consensus       397 ~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~  450 (1313)
                      ++|+..+++++++.|      ....+++.+|.++...|+|++|...++++++..
T Consensus       410 ~~A~~~l~~al~l~P------d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~  457 (765)
T PRK10049        410 RAAENELKKAEVLEP------RNINLEVEQAWTALDLQEWRQMDVLTDDVVARE  457 (765)
T ss_pred             HHHHHHHHHHHhhCC------CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            999999999998764      556688999999999999999999999999864

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=8e-18  Score=191.78  Aligned_cols=291  Identities=17%  Similarity=0.219  Sum_probs=235.7

Q ss_pred             hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChH
Q 000742            6 MQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFK   85 (1313)
Q Consensus         6 ~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~   85 (1313)
                      -+..+|+..|++.-...+...  ..+.++|.+|+..++|++|.++|+.+-++.+-      ..+..-....+++.+.+- 
T Consensus       333 y~~~~A~~~~~klp~h~~nt~--wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~------rv~~meiyST~LWHLq~~-  403 (638)
T KOG1126|consen  333 YNCREALNLFEKLPSHHYNTG--WVLSQLGRAYFELIEYDQAERIFSLVRRIEPY------RVKGMEIYSTTLWHLQDE-  403 (638)
T ss_pred             HHHHHHHHHHHhhHHhcCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc------cccchhHHHHHHHHHHhh-
Confidence            456788888888655555555  44889999999999999999999998777632      233333445555555443 


Q ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHH
Q 000742           86 DALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEY  165 (1313)
Q Consensus        86 ~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~  165 (1313)
                      -++.++.+..++..+..+      .+|..+|.+|.-+        ++++.|+++|++|+++               .|.+
T Consensus       404 v~Ls~Laq~Li~~~~~sP------esWca~GNcfSLQ--------kdh~~Aik~f~RAiQl---------------dp~f  454 (638)
T KOG1126|consen  404 VALSYLAQDLIDTDPNSP------ESWCALGNCFSLQ--------KDHDTAIKCFKRAIQL---------------DPRF  454 (638)
T ss_pred             HHHHHHHHHHHhhCCCCc------HHHHHhcchhhhh--------hHHHHHHHHHHHhhcc---------------CCcc
Confidence            344444133334433333      5799999999987        9999999999999998               5678


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchh
Q 000742          166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHC  245 (1313)
Q Consensus       166 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~  245 (1313)
                      +.+|..+|.-+....+||+|..+|++|+..         ++....+|+.+|.+|.++++++.|.-+|++|+++.|     
T Consensus       455 aYayTLlGhE~~~~ee~d~a~~~fr~Al~~---------~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-----  520 (638)
T KOG1126|consen  455 AYAYTLLGHESIATEEFDKAMKSFRKALGV---------DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-----  520 (638)
T ss_pred             chhhhhcCChhhhhHHHHhHHHHHHhhhcC---------CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-----
Confidence            999999999999999999999999999998         555789999999999999999999999999999987     


Q ss_pred             hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742          246 QGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMII  325 (1313)
Q Consensus       246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~  325 (1313)
                       ........+|.++.+.|+.++|+.+|++|+.+++...-.....+.++..++++.+|+..+++.+               
T Consensus       521 -~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk---------------  584 (638)
T KOG1126|consen  521 -SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELK---------------  584 (638)
T ss_pred             -cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHH---------------
Confidence             7788899999999999999999999999999999887766666666666666666665555442               


Q ss_pred             hhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Q 000742          326 AKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTK  405 (1313)
Q Consensus       326 ~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~k  405 (1313)
                                                                +      -.|+++.+++.+|.+|.++|+.+.|+..|--
T Consensus       585 ------------------------------------------~------~vP~es~v~~llgki~k~~~~~~~Al~~f~~  616 (638)
T KOG1126|consen  585 ------------------------------------------E------LVPQESSVFALLGKIYKRLGNTDLALLHFSW  616 (638)
T ss_pred             ------------------------------------------H------hCcchHHHHHHHHHHHHHHccchHHHHhhHH
Confidence                                                      2      2377889999999999999999999999999


Q ss_pred             HHHHHHH
Q 000742          406 SWEMYKS  412 (1313)
Q Consensus       406 al~l~~~  412 (1313)
                      |+.+.+.
T Consensus       617 A~~ldpk  623 (638)
T KOG1126|consen  617 ALDLDPK  623 (638)
T ss_pred             HhcCCCc
Confidence            9988764

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=1.9e-15  Score=168.33  Aligned_cols=378  Identities=16%  Similarity=0.166  Sum_probs=271.4

Q ss_pred             hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh
Q 000742            5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF   84 (1313)
Q Consensus         5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~   84 (1313)
                      .|+|+.|+..|..|+.++|.+...  |-+...+|...|+|++|++--.+.+++.      +..+..|..+|..+..+|+|
T Consensus        15 ~~d~~~ai~~~t~ai~l~p~nhvl--ySnrsaa~a~~~~~~~al~da~k~~~l~------p~w~kgy~r~Gaa~~~lg~~   86 (539)
T KOG0548|consen   15 SGDFETAIRLFTEAIMLSPTNHVL--YSNRSAAYASLGSYEKALKDATKTRRLN------PDWAKGYSRKGAALFGLGDY   86 (539)
T ss_pred             cccHHHHHHHHHHHHccCCCccch--hcchHHHHHHHhhHHHHHHHHHHHHhcC------CchhhHHHHhHHHHHhcccH
Confidence            589999999999999999997666  8899999999999999999999998887      44589999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccC-------------CcchhhHHHHHHHH-----------
Q 000742           85 KDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRS-------------DDDHYSIRNAKKYF-----------  140 (1313)
Q Consensus        85 ~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~-------------~~~~~~~~~A~~~~-----------  140 (1313)
                      ++|+..| .+.|+..+.+..      .+.+++.++.......             ..-..++-..-..|           
T Consensus        87 ~eA~~ay-~~GL~~d~~n~~------L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p  159 (539)
T KOG0548|consen   87 EEAILAY-SEGLEKDPSNKQ------LKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNP  159 (539)
T ss_pred             HHHHHHH-HHHhhcCCchHH------HHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCc
Confidence            9999999 999998876642      2333333331110000             00000000000111           


Q ss_pred             ------------HHHHHHHHHhc--------------cCCC-----CC--cchh------hHHHHHHHHHHHHHHHHcCC
Q 000742          141 ------------KSAMKLAQTLK--------------ENPA-----TS--RSSF------LKEYIDAHNNIGMLQMELDN  181 (1313)
Q Consensus       141 ------------~~Al~l~~~~~--------------~~~~-----~~--~~~~------~p~~~~~~~~la~~y~~~g~  181 (1313)
                                  .+++-......              ...+     ..  ....      ....+...-.+|...+...+
T Consensus       160 ~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~  239 (539)
T KOG0548|consen  160 TSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKD  239 (539)
T ss_pred             HhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence                        11111100000              0000     00  0001      12256678899999999999


Q ss_pred             HHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHH
Q 000742          182 LEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKI-EHCQGEAKGYINLGELHY  260 (1313)
Q Consensus       182 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~-~~~~~~~~~~~~la~~~~  260 (1313)
                      +..|++.|.+++++.          .....+.+.+-+|+.+|.+.+++....++++..... .+....+.++..+|..|.
T Consensus       240 f~~a~q~y~~a~el~----------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~  309 (539)
T KOG0548|consen  240 FETAIQHYAKALELA----------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYT  309 (539)
T ss_pred             HHHHHHHHHHHHhHh----------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhh
Confidence            999999999999994          245677899999999999999999999988876654 334456777778999999


Q ss_pred             HhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHH
Q 000742          261 RVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQN  340 (1313)
Q Consensus       261 ~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~  340 (1313)
                      .+++++.|+.+|++++.-...        ..+...+..+.++++..+..       ..+.+..                +
T Consensus       310 k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~-------a~~~pe~----------------A  358 (539)
T KOG0548|consen  310 KREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERK-------AYINPEK----------------A  358 (539)
T ss_pred             hHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHH-------HhhChhH----------------H
Confidence            999999999999998876543        11222333333333332221       1111111                1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHH
Q 000742          341 ASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQA  420 (1313)
Q Consensus       341 ~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~  420 (1313)
                      .....-|..+...++|..|+.+|.+++..      .|..+..|.+.|.+|.++|++..|+...++++++.      +...
T Consensus       359 ~e~r~kGne~Fk~gdy~~Av~~YteAIkr------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~------p~~~  426 (539)
T KOG0548|consen  359 EEEREKGNEAFKKGDYPEAVKHYTEAIKR------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD------PNFI  426 (539)
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhc------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------chHH
Confidence            11222366778889999999999997653      38888999999999999999999999999999884      4677


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000742          421 LAKVNMGNVLDSNGDWAGALDAFQEGYRIA  450 (1313)
Q Consensus       421 ~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~  450 (1313)
                      .+|...|.++..+.+|++|++.|+++++..
T Consensus       427 kgy~RKg~al~~mk~ydkAleay~eale~d  456 (539)
T KOG0548|consen  427 KAYLRKGAALRAMKEYDKALEAYQEALELD  456 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            889999999999999999999999999875

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.76  E-value=8.2e-20  Score=214.16  Aligned_cols=368  Identities=18%  Similarity=0.159  Sum_probs=210.8

Q ss_pred             CeEEecCCCCCcCCHHHHHHHhhcCCCcCEEEecCCCCCHHHHHHHHHHHHhcccCccceEEEccCCCCCHHHHHHHHhc
Q 000742          833 DEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICEC  912 (1313)
Q Consensus       833 ~~l~l~~~~l~~~~~~~l~~~L~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~~~~l~~L~Ls~n~l~~~~~~~l~~~  912 (1313)
                      ..|+++.|.+-+.....+    ..+-+|++|||++|.+++-++. +..       .+.|..|++++|.|...+. .+.  
T Consensus        24 ~~ln~~~N~~l~~pl~~~----~~~v~L~~l~lsnn~~~~fp~~-it~-------l~~L~~ln~s~n~i~~vp~-s~~--   88 (1081)
T KOG0618|consen   24 QILNLRRNSLLSRPLEFV----EKRVKLKSLDLSNNQISSFPIQ-ITL-------LSHLRQLNLSRNYIRSVPS-SCS--   88 (1081)
T ss_pred             HhhhccccccccCchHHh----hheeeeEEeeccccccccCCch-hhh-------HHHHhhcccchhhHhhCch-hhh--
Confidence            447788887766543322    2234599999999998874422 111       2336788999998866653 222  


Q ss_pred             ccCCCCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCcc----------------
Q 000742          913 PVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLA----------------  976 (1313)
Q Consensus       913 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~----------------  976 (1313)
                        .+.+|++|+|.+|.+..     ++..+..+++|+.|+++.|.++.     ++..+..+..+.                
T Consensus        89 --~~~~l~~lnL~~n~l~~-----lP~~~~~lknl~~LdlS~N~f~~-----~Pl~i~~lt~~~~~~~s~N~~~~~lg~~  156 (1081)
T KOG0618|consen   89 --NMRNLQYLNLKNNRLQS-----LPASISELKNLQYLDLSFNHFGP-----IPLVIEVLTAEEELAASNNEKIQRLGQT  156 (1081)
T ss_pred             --hhhcchhheeccchhhc-----CchhHHhhhcccccccchhccCC-----CchhHHhhhHHHHHhhhcchhhhhhccc
Confidence              34899999999998774     66778888899999999998873     222333333333                


Q ss_pred             ---EEEeCCCCCCChhhHHHHHHhhccCCccceeecCCCCCChHHHHHHHHHh--------------hcCC---------
Q 000742          977 ---QLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLA--------------KTSC--------- 1030 (1313)
Q Consensus       977 ---~L~Ls~n~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~--------------~~~~--------- 1030 (1313)
                         .+++..|.+ .+.    ++..+..+..  .|+|..|.++......+..+.              ..++         
T Consensus       157 ~ik~~~l~~n~l-~~~----~~~~i~~l~~--~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n  229 (1081)
T KOG0618|consen  157 SIKKLDLRLNVL-GGS----FLIDIYNLTH--QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHN  229 (1081)
T ss_pred             cchhhhhhhhhc-ccc----hhcchhhhhe--eeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccC
Confidence               444443331 111    1111222222  366776666522111111110              0123         


Q ss_pred             -------------ccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhH------------------HHHHH
Q 000742         1031 -------------LTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTC------------------IHKFT 1079 (1313)
Q Consensus      1031 -------------L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~------------------~~~l~ 1079 (1313)
                                   |+.++++.|.++.     +++ ....+.+|+.|+..+|+|+..-                  +.+++
T Consensus       230 ~l~~~~~~p~p~nl~~~dis~n~l~~-----lp~-wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip  303 (1081)
T KOG0618|consen  230 PLTTLDVHPVPLNLQYLDISHNNLSN-----LPE-WIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIP  303 (1081)
T ss_pred             cceeeccccccccceeeecchhhhhc-----chH-HHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCC
Confidence                         4444444444332     221 1123345666666666553321                  11122


Q ss_pred             HHHhcCCCccEEEccCCCCChHHHHHHHHHhc--------------------CCCCceeEEEeecCCCCHHHHHHHHHHh
Q 000742         1080 ASVSLVHGILELNLGGNPIMKEGANALASLLM--------------------NPQCCLKVLVLSKCQLGLAGVLQLIKAL 1139 (1313)
Q Consensus      1080 ~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~--------------------~~~~~L~~L~Ls~n~i~~~g~~~l~~~l 1139 (1313)
                      ..+...++|++|||..|.|.......+.....                    ...+.|+.|.+.+|.+++.    ....|
T Consensus       304 ~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~----c~p~l  379 (1081)
T KOG0618|consen  304 PFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDS----CFPVL  379 (1081)
T ss_pred             CcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccccc----chhhh
Confidence            22334556777777777765322211111100                    0123466777777777766    33456


Q ss_pred             hcCCCccEEEccCCCCChhhhhh--hcccccccCCcccccccccccccccccccccccccCCCCcccccccCCccchhhh
Q 000742         1140 SENDTLEELNLADNASKELTLQQ--NLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVES 1217 (1313)
Q Consensus      1140 ~~~~~L~~L~Ls~N~i~~~~~~~--~l~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 1217 (1313)
                      .+.++|+.|+|++|+++......  .+..|+.++|++|.++.+|             ..+.+|..|++|..-+|.+...+
T Consensus       380 ~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-------------~tva~~~~L~tL~ahsN~l~~fP  446 (1081)
T KOG0618|consen  380 VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-------------DTVANLGRLHTLRAHSNQLLSFP  446 (1081)
T ss_pred             ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-------------HHHHhhhhhHHHhhcCCceeech
Confidence            67777888888888766542221  2355667778888777766             34566777777777777775543


Q ss_pred             ccccCCCCcccccccCCccchhhHH-HHHHHHhccccCceecCCCCC
Q 000742         1218 AASGFDNSCTSSCQKNSSFECQFVQ-ELSSAIGMAKPLQLLDLSNNG 1263 (1313)
Q Consensus      1218 ~~~~~~~~~~~~L~~L~Ls~n~l~~-~l~~~l~~~~~L~~LdLs~N~ 1263 (1313)
                      .     ..-...|+.+|||.|++.. .++..+.. |+|++|||+||.
T Consensus       447 e-----~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  447 E-----LAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             h-----hhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence            2     2334589999999999984 44555544 899999999997

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=1.1e-15  Score=166.12  Aligned_cols=202  Identities=13%  Similarity=0.077  Sum_probs=131.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHH
Q 000742          213 HNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQI  292 (1313)
Q Consensus       213 ~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~  292 (1313)
                      .-+|+.|...++.++|+.||++|+++.+      ....+|..+|.-|..+++...|+..|+.|+++.|.....+..++++
T Consensus       334 CiIaNYYSlr~eHEKAv~YFkRALkLNp------~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQa  407 (559)
T KOG1155|consen  334 CIIANYYSLRSEHEKAVMYFKRALKLNP------KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQA  407 (559)
T ss_pred             eeehhHHHHHHhHHHHHHHHHHHHhcCc------chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHH
Confidence            3345556666666666666666666654      4555666666666666666666666666666666555544444444


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742          293 DQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASE  372 (1313)
Q Consensus       293 ~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~  372 (1313)
                      |.-++....|+-+|+++....+.-..                       .+..||+.|...++.++|++.|+.++.....
T Consensus       408 Yeim~Mh~YaLyYfqkA~~~kPnDsR-----------------------lw~aLG~CY~kl~~~~eAiKCykrai~~~dt  464 (559)
T KOG1155|consen  408 YEIMKMHFYALYYFQKALELKPNDSR-----------------------LWVALGECYEKLNRLEEAIKCYKRAILLGDT  464 (559)
T ss_pred             HHHhcchHHHHHHHHHHHhcCCCchH-----------------------HHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence            44444444444444444322111111                       1455666777777777788888888766544


Q ss_pred             hCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCC-chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000742          373 LCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGN-LEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRI  449 (1313)
Q Consensus       373 ~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~-~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i  449 (1313)
                            ...++..+|.+|.+++++++|..+|++.++.....+. .+....+...||.-+.++++|++|-.|..+++.-
T Consensus       465 ------e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~  536 (559)
T KOG1155|consen  465 ------EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG  536 (559)
T ss_pred             ------chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence                  3388999999999999999999999999987644333 2335666777999999999999999988877653

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.76  E-value=4e-20  Score=196.65  Aligned_cols=126  Identities=19%  Similarity=0.163  Sum_probs=88.1

Q ss_pred             EEEeecCCCCHHHHHHHHHHhhcCCCccEEEccCCCCChhhhhh-hcccccccCCccccccccccccccccccccccccc
Q 000742         1119 VLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKELTLQQ-NLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMN 1197 (1313)
Q Consensus      1119 ~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~-~l~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~ 1197 (1313)
                      .+.+++|.++     .++..++..++|+.|+|++|.+.+....+ -+..|+.++++.|.+..+|.             .+
T Consensus       416 ~l~lsnn~is-----fv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~-------------~~  477 (565)
T KOG0472|consen  416 DLVLSNNKIS-----FVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPE-------------CL  477 (565)
T ss_pred             HHHhhcCccc-----cchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchH-------------HH
Confidence            3455555554     24455677778888888888777663322 12457788888887777663             12


Q ss_pred             CCCCcccccccCCccchhhhccccCCCCcccccccCCccchhhHHHHHHHHhccccCceecCCCCCCCH
Q 000742         1198 TDCNDLEVADSEDDKIRVESAASGFDNSCTSSCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFST 1266 (1313)
Q Consensus      1198 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~l~~~l~~~~~L~~LdLs~N~l~~ 1266 (1313)
                      --+..|+.+-.++|++....+.   --..+.+|..|||.+|.+ +.+|..+++|.+|++|+|+||+|.-
T Consensus       478 y~lq~lEtllas~nqi~~vd~~---~l~nm~nL~tLDL~nNdl-q~IPp~LgnmtnL~hLeL~gNpfr~  542 (565)
T KOG0472|consen  478 YELQTLETLLASNNQIGSVDPS---GLKNMRNLTTLDLQNNDL-QQIPPILGNMTNLRHLELDGNPFRQ  542 (565)
T ss_pred             hhHHHHHHHHhccccccccChH---HhhhhhhcceeccCCCch-hhCChhhccccceeEEEecCCccCC
Confidence            2245677777777888666442   112345999999999996 5588999999999999999999984

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.74  E-value=2.9e-16  Score=187.36  Aligned_cols=235  Identities=16%  Similarity=0.096  Sum_probs=191.4

Q ss_pred             chhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742            4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH   83 (1313)
Q Consensus         4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~   83 (1313)
                      ..+++++|+..|+++++.+|....+  +..+|.+|...|++++|+..+++++....  ........++..+|.+|...|+
T Consensus        47 ~~~~~~~A~~~~~~al~~~p~~~~~--~~~la~~~~~~g~~~~A~~~~~~~l~~~~--~~~~~~~~~~~~La~~~~~~g~  122 (389)
T PRK11788         47 LNEQPDKAIDLFIEMLKVDPETVEL--HLALGNLFRRRGEVDRAIRIHQNLLSRPD--LTREQRLLALQELGQDYLKAGL  122 (389)
T ss_pred             hcCChHHHHHHHHHHHhcCcccHHH--HHHHHHHHHHcCcHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHHHHCCC
Confidence            3578999999999999998876555  88999999999999999999998876310  0111124678899999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhH
Q 000742           84 FKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLK  163 (1313)
Q Consensus        84 ~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p  163 (1313)
                      +++|+.+| +++++..+.      ...++..++.+|...        |++++|++.++++++....   ..       ..
T Consensus       123 ~~~A~~~~-~~~l~~~~~------~~~~~~~la~~~~~~--------g~~~~A~~~~~~~~~~~~~---~~-------~~  177 (389)
T PRK11788        123 LDRAEELF-LQLVDEGDF------AEGALQQLLEIYQQE--------KDWQKAIDVAERLEKLGGD---SL-------RV  177 (389)
T ss_pred             HHHHHHHH-HHHHcCCcc------hHHHHHHHHHHHHHh--------chHHHHHHHHHHHHHhcCC---cc-------hH
Confidence            99999999 999876332      235788899999987        9999999999998765211   00       11


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000742          164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIE  243 (1313)
Q Consensus       164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~  243 (1313)
                      ..+..+..+|.++...|++++|+.+|+++++..+.         ...++..+|.+|...|++++|++++++++...+   
T Consensus       178 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p---  245 (389)
T PRK11788        178 EIAHFYCELAQQALARGDLDAARALLKKALAADPQ---------CVRASILLGDLALAQGDYAAAIEALERVEEQDP---  245 (389)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC---------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh---
Confidence            34556788999999999999999999999987432         356888999999999999999999999998754   


Q ss_pred             hhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 000742          244 HCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQS  281 (1313)
Q Consensus       244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~  281 (1313)
                        .....++..++.+|...|++++|+.+++++++..|.
T Consensus       246 --~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~  281 (389)
T PRK11788        246 --EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG  281 (389)
T ss_pred             --hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence              234567889999999999999999999999987653

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.74  E-value=1e-15  Score=164.26  Aligned_cols=382  Identities=15%  Similarity=0.147  Sum_probs=255.3

Q ss_pred             chhhHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHH
Q 000742            4 DEMQMSEAKRAYRSAKEEGNR---QEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLR   80 (1313)
Q Consensus         4 ~~~~~~~A~~~l~~a~~~~~~---~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~   80 (1313)
                      .++.|.+|+++|+.|+..-|.   .....++.++|..+.+.|+|+.|+..|+...+..+.       ..+-+++..+++.
T Consensus       249 kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn-------~~a~~nl~i~~f~  321 (840)
T KOG2003|consen  249 KKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPN-------FIAALNLIICAFA  321 (840)
T ss_pred             ehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCcc-------HHhhhhhhhhhee
Confidence            467899999999999886553   556778999999999999999999999998887643       3455677788888


Q ss_pred             ccChHHHHHHHHHHHHHHHHHh---------cC--HHHHHHHHH-----H-----------------------------H
Q 000742           81 LEHFKDALIYQVKKHLELAKDA---------SD--LVEQQRACT-----Q-----------------------------L  115 (1313)
Q Consensus        81 ~g~~~~A~~~~~~kal~l~~~~---------~~--~~~~a~a~~-----~-----------------------------l  115 (1313)
                      .|+-++-.+.| .+.+.+-...         .+  ......+..     +                             .
T Consensus       322 i~d~ekmkeaf-~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~  400 (840)
T KOG2003|consen  322 IGDAEKMKEAF-QKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA  400 (840)
T ss_pred             cCcHHHHHHHH-HHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc
Confidence            88888887777 7766542111         01  000000000     0                             0


Q ss_pred             H--HHHHHHhc--c-CCcchhhHHHHHHH-----HHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHc--CCHH
Q 000742          116 G--RTYYEMFL--R-SDDDHYSIRNAKKY-----FKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMEL--DNLE  183 (1313)
Q Consensus       116 g--~~y~~l~~--~-~~~~~~~~~~A~~~-----~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~--g~~~  183 (1313)
                      |  ++...+..  + .....-...+|.++     ++.|+++.+-+.....       .....+..++..+++.+  .++.
T Consensus       401 g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdn-------k~~saaa~nl~~l~flqggk~~~  473 (840)
T KOG2003|consen  401 GCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDN-------KTASAAANNLCALRFLQGGKDFA  473 (840)
T ss_pred             ccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccc-------hhhHHHhhhhHHHHHHhcccchh
Confidence            0  00000000  0 00000011122222     2233444333322221       12345667777777764  4789


Q ss_pred             HHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhc
Q 000742          184 EAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQ  263 (1313)
Q Consensus       184 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g  263 (1313)
                      +|..|...|+.+         +...+.++.+.|.+-+..|++++|.+.|++|+.-..      .-..+++++|..+..+|
T Consensus       474 ~aqqyad~aln~---------dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda------sc~ealfniglt~e~~~  538 (840)
T KOG2003|consen  474 DAQQYADIALNI---------DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA------SCTEALFNIGLTAEALG  538 (840)
T ss_pred             HHHHHHHHHhcc---------cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch------HHHHHHHHhcccHHHhc
Confidence            999999999887         444677899999999999999999999999987544      67889999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHH
Q 000742          264 KYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASL  343 (1313)
Q Consensus       264 ~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l  343 (1313)
                      +.++|+++|-+.-.+......       ++..++.+|+.++.-.++++.+-+...+      ...++          ..+
T Consensus       539 ~ldeald~f~klh~il~nn~e-------vl~qianiye~led~aqaie~~~q~~sl------ip~dp----------~il  595 (840)
T KOG2003|consen  539 NLDEALDCFLKLHAILLNNAE-------VLVQIANIYELLEDPAQAIELLMQANSL------IPNDP----------AIL  595 (840)
T ss_pred             CHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHhhCHHHHHHHHHHhccc------CCCCH----------HHH
Confidence            999999999998877765544       3344444444444444443322222221      12222          126


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHH
Q 000742          344 DRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAK  423 (1313)
Q Consensus       344 ~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~  423 (1313)
                      ..|++.|...|+-.+|.+++-....      ..|-..++...+|..|....-.++|+.||++|.-+.      +......
T Consensus       596 skl~dlydqegdksqafq~~ydsyr------yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq------p~~~kwq  663 (840)
T KOG2003|consen  596 SKLADLYDQEGDKSQAFQCHYDSYR------YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ------PNQSKWQ  663 (840)
T ss_pred             HHHHHHhhcccchhhhhhhhhhccc------ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC------ccHHHHH
Confidence            7778888777877777776655443      335556788889999999999999999999998654      3566777


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000742          424 VNMGNVLDSNGDWAGALDAFQEGYRIA  450 (1313)
Q Consensus       424 ~~lg~~y~~~g~~~~A~~~~~kAl~i~  450 (1313)
                      ..+|.|+.+.|+|++|...|+..-+-+
T Consensus       664 lmiasc~rrsgnyqka~d~yk~~hrkf  690 (840)
T KOG2003|consen  664 LMIASCFRRSGNYQKAFDLYKDIHRKF  690 (840)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence            889999999999999999998765543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=7.1e-16  Score=167.49  Aligned_cols=260  Identities=19%  Similarity=0.204  Sum_probs=195.0

Q ss_pred             hhHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhC----------------------
Q 000742            6 MQMSEAKRAYRSAKEEG-NRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYL----------------------   62 (1313)
Q Consensus         6 ~~~~~A~~~l~~a~~~~-~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~----------------------   62 (1313)
                      .+.+++.+-++.....+ +...-.  -...|.+++.+.+|++|+..|+...+..+-..                      
T Consensus       241 ~q~~e~~~k~e~l~~~gf~~~~~i--~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~L  318 (559)
T KOG1155|consen  241 HQHEEALQKKERLSSVGFPNSMYI--KTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYL  318 (559)
T ss_pred             HHHHHHHHHHHHHHhccCCccHHH--HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHH
Confidence            35566666666555553 222222  34667777777788888877776654422110                      


Q ss_pred             ------CCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHH
Q 000742           63 ------PEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNA  136 (1313)
Q Consensus        63 ------~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A  136 (1313)
                            -+...++++.-+|..|...++.++|+.|| ++|+++.|+..      .+|..+|.-|..+        .+...|
T Consensus       319 A~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YF-kRALkLNp~~~------~aWTLmGHEyvEm--------KNt~AA  383 (559)
T KOG1155|consen  319 AQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYF-KRALKLNPKYL------SAWTLMGHEYVEM--------KNTHAA  383 (559)
T ss_pred             HHHHHHhccCCccceeeehhHHHHHHhHHHHHHHH-HHHHhcCcchh------HHHHHhhHHHHHh--------cccHHH
Confidence                  01223455557788888889999999999 99999988764      5789999999988        889999


Q ss_pred             HHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHH
Q 000742          137 KKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLG  216 (1313)
Q Consensus       137 ~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg  216 (1313)
                      ++.|++|+++               .|....+|+.+|++|..++...-|+-||++|.+.         .|...+.|..||
T Consensus       384 i~sYRrAvdi---------------~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~---------kPnDsRlw~aLG  439 (559)
T KOG1155|consen  384 IESYRRAVDI---------------NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL---------KPNDSRLWVALG  439 (559)
T ss_pred             HHHHHHHHhc---------------CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc---------CCCchHHHHHHH
Confidence            9999999988               5577889999999999999999999999999888         455678999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhH
Q 000742          217 NVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNI  296 (1313)
Q Consensus       217 ~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~l  296 (1313)
                      .+|.++++.++|+++|.+|+....      ....++..+|.+|.++++.++|..+|++.++.....+........+..-+
T Consensus       440 ~CY~kl~~~~eAiKCykrai~~~d------te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fL  513 (559)
T KOG1155|consen  440 ECYEKLNRLEEAIKCYKRAILLGD------TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFL  513 (559)
T ss_pred             HHHHHhccHHHHHHHHHHHHhccc------cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence            999999999999999999998855      46688999999999999999999999999986643333333233333447


Q ss_pred             HHHHHHHHHHHHHHHH
Q 000742          297 ETVKKAIEVMDELKKE  312 (1313)
Q Consensus       297 g~~~~a~~~~~~a~~~  312 (1313)
                      +.++.-.+.|+++..+
T Consensus       514 A~~f~k~~~~~~As~Y  529 (559)
T KOG1155|consen  514 AEYFKKMKDFDEASYY  529 (559)
T ss_pred             HHHHHhhcchHHHHHH
Confidence            7777777777766543

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=1.3e-15  Score=169.86  Aligned_cols=393  Identities=13%  Similarity=0.133  Sum_probs=270.6

Q ss_pred             chhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742            4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH   83 (1313)
Q Consensus         4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~   83 (1313)
                      ++.+|.-|+-.-.++.....++..+   +.+|.+|+..|+|+.|......- .+.      .....+.+..+.++....+
T Consensus        28 ~q~~y~~a~f~adkV~~l~~dp~d~---~~~aq~l~~~~~y~ra~~lit~~-~le------~~d~~cryL~~~~l~~lk~   97 (611)
T KOG1173|consen   28 MQHRYKTALFWADKVAGLTNDPADI---YWLAQVLYLGRQYERAAHLITTY-KLE------KRDIACRYLAAKCLVKLKE   97 (611)
T ss_pred             HHHhhhHHHHHHHHHHhccCChHHH---HHHHHHHHhhhHHHHHHHHHHHh-hhh------hhhHHHHHHHHHHHHHHHH
Confidence            3566777777777777676555554   56899999999999888776543 222      2236778889999999999


Q ss_pred             hHHHHHHHHHHH----H--HHHHHh---------c----CHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHH
Q 000742           84 FKDALIYQVKKH----L--ELAKDA---------S----DLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAM  144 (1313)
Q Consensus        84 ~~~A~~~~~~ka----l--~l~~~~---------~----~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al  144 (1313)
                      +++|+..+ .++    .  ...+..         .    .....+..++..|.+|..+        .+.++|...|.+|+
T Consensus        98 ~~~al~vl-~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al--------~n~~~ar~~Y~~Al  168 (611)
T KOG1173|consen   98 WDQALLVL-GRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVAL--------DNREEARDKYKEAL  168 (611)
T ss_pred             HHHHHHHh-cccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhh--------ccHHHHHHHHHHHH
Confidence            99999888 632    1  111111         0    0122344555667777766        66777777776653


Q ss_pred             HHH-------------------------H------------------------HhccCCCCCc---c--hhhHHHHHHHH
Q 000742          145 KLA-------------------------Q------------------------TLKENPATSR---S--SFLKEYIDAHN  170 (1313)
Q Consensus       145 ~l~-------------------------~------------------------~~~~~~~~~~---~--~~~p~~~~~~~  170 (1313)
                      ..-                         .                        +..+......   .  .-.........
T Consensus       169 ~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~  248 (611)
T KOG1173|consen  169 LADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLA  248 (611)
T ss_pred             hcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHH
Confidence            220                         0                        0000000000   0  00112345566


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhHhhhhc------------c-------------CCCchHHHHHHHHHHHHHHHcCCH
Q 000742          171 NIGMLQMELDNLEEAKKFLIRGLEICNEEE------------V-------------SEDDDGRSRLHHNLGNVYMELRMW  225 (1313)
Q Consensus       171 ~la~~y~~~g~~~~A~~~~~~al~~~~~~~------------~-------------~~~~~~~~~~~~~lg~~y~~~g~~  225 (1313)
                      ..+..++..++|.+..+..+..++..+-..            .             -+..|..+..|+..|..|...|++
T Consensus       249 ~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~  328 (611)
T KOG1173|consen  249 EKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKY  328 (611)
T ss_pred             HHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCc
Confidence            678888889999999999888877643210            0             022344455677777778888888


Q ss_pred             HHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHH
Q 000742          226 DKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEV  305 (1313)
Q Consensus       226 ~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~  305 (1313)
                      .+|..||-||..+.+      ..+.+|...|..|...|+.++|+.+|..|-++.+...-+...++.-|..++....|-..
T Consensus       329 seARry~SKat~lD~------~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~F  402 (611)
T KOG1173|consen  329 SEARRYFSKATTLDP------TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKF  402 (611)
T ss_pred             HHHHHHHHHHhhcCc------cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHH
Confidence            888888888877765      66777788888888888888888888888887777666665555555556666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-hhhHHHHH
Q 000742          306 MDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDK-GKLSDSFL  384 (1313)
Q Consensus       306 ~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~-~~~a~~~~  384 (1313)
                      |.++....+.-.                       ..+..+|-++...+.|.+|..+++.++...+..... +.....+.
T Consensus       403 f~~A~ai~P~Dp-----------------------lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~  459 (611)
T KOG1173|consen  403 FKQALAIAPSDP-----------------------LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLN  459 (611)
T ss_pred             HHHHHhcCCCcc-----------------------hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHH
Confidence            655542222211                       226777888888999999999999999666655433 34678899


Q ss_pred             HHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000742          385 VIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIA  450 (1313)
Q Consensus       385 ~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~  450 (1313)
                      +||.+|.+++.+++|+.+|++++.+.+      ..+.++..+|.+|..+|+++.|+.+|.+|+.+.
T Consensus       460 NLGH~~Rkl~~~~eAI~~~q~aL~l~~------k~~~~~asig~iy~llgnld~Aid~fhKaL~l~  519 (611)
T KOG1173|consen  460 NLGHAYRKLNKYEEAIDYYQKALLLSP------KDASTHASIGYIYHLLGNLDKAIDHFHKALALK  519 (611)
T ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHcCC------CchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence            999999999999999999999998765      567889999999999999999999999999885

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.72  E-value=1.5e-14  Score=151.99  Aligned_cols=345  Identities=14%  Similarity=0.111  Sum_probs=269.1

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 000742           31 ANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQR  110 (1313)
Q Consensus        31 ~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~  110 (1313)
                      ...-|.-++...++++|+..+.+.+......   ......+-.+..+..++|.|++++.+. --.+..+.+..+......
T Consensus         9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~---~~Rf~~lG~l~~a~s~~g~y~~mL~~a-~sqi~~a~~~~ds~~~~e   84 (518)
T KOG1941|consen    9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSDL---MGRFRVLGCLVTAHSEMGRYKEMLKFA-VSQIDTARELEDSDFLLE   84 (518)
T ss_pred             HHHHHHhHhcCchHHHHHHHHHHHHHHHHHH---HHHHHHhccchhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            4566778889999999999999998776432   334567778889999999999999999 888889998888888899


Q ss_pred             HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000742          111 ACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLI  190 (1313)
Q Consensus       111 a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~  190 (1313)
                      ++.++++.+..+        .++.+++.|-+..+.+-..-...          .-..+...+|.++..++.|++++++|+
T Consensus        85 a~lnlar~~e~l--------~~f~kt~~y~k~~l~lpgt~~~~----------~~gq~~l~~~~Ahlgls~fq~~Lesfe  146 (518)
T KOG1941|consen   85 AYLNLARSNEKL--------CEFHKTISYCKTCLGLPGTRAGQ----------LGGQVSLSMGNAHLGLSVFQKALESFE  146 (518)
T ss_pred             HHHHHHHHHHHH--------HHhhhHHHHHHHHhcCCCCCccc----------ccchhhhhHHHHhhhHHHHHHHHHHHH
Confidence            999999999988        88888888887776651111000          123567779999999999999999999


Q ss_pred             HHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc--h--hhhHHHHHHHHHHHHHHhcCHH
Q 000742          191 RGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIE--H--CQGEAKGYINLGELHYRVQKYD  266 (1313)
Q Consensus       191 ~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~--~--~~~~~~~~~~la~~~~~~g~~~  266 (1313)
                      +|++++.+.   ++......++..+|..|....++++|.-+..+|.++....+  +  ......+++.++..+..+|..-
T Consensus       147 ~A~~~A~~~---~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~Lg  223 (518)
T KOG1941|consen  147 KALRYAHNN---DDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLG  223 (518)
T ss_pred             HHHHHhhcc---CCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccc
Confidence            999998885   66666788999999999999999999999999999988764  2  2345667899999999999999


Q ss_pred             HHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHH
Q 000742          267 EAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRL  346 (1313)
Q Consensus       267 ~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L  346 (1313)
                      .|.++.++|.++.-..++....                                                   +..+--+
T Consensus       224 dA~e~C~Ea~klal~~Gdra~~---------------------------------------------------arc~~~~  252 (518)
T KOG1941|consen  224 DAMECCEEAMKLALQHGDRALQ---------------------------------------------------ARCLLCF  252 (518)
T ss_pred             cHHHHHHHHHHHHHHhCChHHH---------------------------------------------------HHHHHHH
Confidence            9999999999998777664221                                                   1224445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHH-----HHHHHHHHHHHHHHhCCchhHHH
Q 000742          347 IEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNK-----AIKWYTKSWEMYKSIGNLEGQAL  421 (1313)
Q Consensus       347 ~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~-----A~~~~~kal~l~~~~~~~~~~~~  421 (1313)
                      +++|+..++.+.|..-|++|......++++.....++...|.+.....-..+     |+++-++.+++..+++.....-.
T Consensus       253 aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK  332 (518)
T KOG1941|consen  253 ADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLK  332 (518)
T ss_pred             HHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHH
Confidence            5556666666666666777777777777777777777777777766665555     88888888888888887777777


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742          422 AKVNMGNVLDSNGDWAGALDAFQEGYRIAV  451 (1313)
Q Consensus       422 ~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~  451 (1313)
                      .+..++.+|...|.-++--..+..|-+..+
T Consensus       333 ~hcrla~iYrs~gl~d~~~~h~~ra~~~~~  362 (518)
T KOG1941|consen  333 LHCRLASIYRSKGLQDELRAHVVRAHECVE  362 (518)
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence            788888888888777766666666555443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.72  E-value=5.4e-19  Score=207.39  Aligned_cols=417  Identities=18%  Similarity=0.140  Sum_probs=208.4

Q ss_pred             hccCchhhhhhhhcCCccccchhhh-hhhcCcceeeEeecccccch--hHHHHHHHHHhcCCCchHHHHHHHhhccCCCe
Q 000742          758 ISKGLLPIIQHMKYGGRSLESFDAF-KDQLGKDIIEVSIDGWVQKR--LMKLYIECCKELSEAPNMKLLKKLYISEVEDE  834 (1313)
Q Consensus       758 ~~~gl~p~l~~l~~~g~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~--l~~l~l~~c~~l~~~~~~~~l~~l~~~~~~~~  834 (1313)
                      -+|+..-.|+.+...+..+..+..- ...-..+.+.++...|.+-|  +..+....-...+.+   ..+..+.+.. .+.
T Consensus        85 ~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N---~~~~~lg~~~-ik~  160 (1081)
T KOG0618|consen   85 SSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNN---EKIQRLGQTS-IKK  160 (1081)
T ss_pred             hhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcc---hhhhhhcccc-chh
Confidence            3566667777887777777766622 11113234455555554322  333333222222222   1122222222 356


Q ss_pred             EEecCCCCCcCCHHHHHHHhhcCCCcC-EEEecCCCCCHHHHHHHHHHHHhcc----------cCccceEEEccCCCCCH
Q 000742          835 VIVSECELQDISVTPLLNALHTHKTVA-LLDLSHNLLGNGTMEKLQQFFISSC----------QNYVDLTLDLHCNRFGP  903 (1313)
Q Consensus       835 l~l~~~~l~~~~~~~l~~~L~~~~~L~-~L~Ls~n~l~~~~~~~L~~~l~~~~----------~~~~l~~L~Ls~n~l~~  903 (1313)
                      +++..+.+...-+..+       ..++ .|||+.|.++...+..+..+-.-.|          ..++++.|..++|.++.
T Consensus       161 ~~l~~n~l~~~~~~~i-------~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~  233 (1081)
T KOG0618|consen  161 LDLRLNVLGGSFLIDI-------YNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTT  233 (1081)
T ss_pred             hhhhhhhcccchhcch-------hhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCccee
Confidence            7777776655433222       2233 4888888876433333222100011          12233344444444431


Q ss_pred             HHHHHHHhcccCCCCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCC
Q 000742          904 TTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYN  983 (1313)
Q Consensus       904 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n  983 (1313)
                      ...      .....+|+++++|+|.++.     +++++..|.+|+.|++.+|.|+     .++..+....+|+.|++.+|
T Consensus       234 ~~~------~p~p~nl~~~dis~n~l~~-----lp~wi~~~~nle~l~~n~N~l~-----~lp~ri~~~~~L~~l~~~~n  297 (1081)
T KOG0618|consen  234 LDV------HPVPLNLQYLDISHNNLSN-----LPEWIGACANLEALNANHNRLV-----ALPLRISRITSLVSLSAAYN  297 (1081)
T ss_pred             ecc------ccccccceeeecchhhhhc-----chHHHHhcccceEecccchhHH-----hhHHHHhhhhhHHHHHhhhh
Confidence            111      0112456666666665554     4455556666666666666553     34444445555666655555


Q ss_pred             CCCChhhHHHHHHhhccCCccceeecCCCCCChHHHHHHHHHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEE
Q 000742          984 SPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKL 1063 (1313)
Q Consensus       984 ~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 1063 (1313)
                      .      +..++..+...++|++|+|..|+|.......+..+  +.+|..|+.+.|.+....  ...+   ...+.|+.|
T Consensus       298 e------l~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~--~~~l~~ln~s~n~l~~lp--~~~e---~~~~~Lq~L  364 (1081)
T KOG0618|consen  298 E------LEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVL--NASLNTLNVSSNKLSTLP--SYEE---NNHAALQEL  364 (1081)
T ss_pred             h------hhhCCCcccccceeeeeeehhccccccchHHHhhh--hHHHHHHhhhhccccccc--cccc---hhhHHHHHH
Confidence            5      23334444455566666666666544322111110  112444444444443211  0000   112345555


Q ss_pred             EccCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCC
Q 000742         1064 DLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSEND 1143 (1313)
Q Consensus      1064 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~ 1143 (1313)
                      .+.+|.+++..+.    .+.+.++|+.|+|++|.++......+.++-     .|+.|+||||.++     .|+..+..++
T Consensus       365 ylanN~Ltd~c~p----~l~~~~hLKVLhLsyNrL~~fpas~~~kle-----~LeeL~LSGNkL~-----~Lp~tva~~~  430 (1081)
T KOG0618|consen  365 YLANNHLTDSCFP----VLVNFKHLKVLHLSYNRLNSFPASKLRKLE-----ELEELNLSGNKLT-----TLPDTVANLG  430 (1081)
T ss_pred             HHhcCcccccchh----hhccccceeeeeecccccccCCHHHHhchH-----HhHHHhcccchhh-----hhhHHHHhhh
Confidence            5555555555322    233455555555555555433233332221     1555555555555     2445555555


Q ss_pred             CccEEEccCCCCChhhhhhhcccccccCCcccccccccccccccccccccccccCCCCcccccccCCccchhhhccccCC
Q 000742         1144 TLEELNLADNASKELTLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFD 1223 (1313)
Q Consensus      1144 ~L~~L~Ls~N~i~~~~~~~~l~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 1223 (1313)
                      .|++|...+|.|.                      +.|              .+..++.|+++|+|.|+++...-    .
T Consensus       431 ~L~tL~ahsN~l~----------------------~fP--------------e~~~l~qL~~lDlS~N~L~~~~l----~  470 (1081)
T KOG0618|consen  431 RLHTLRAHSNQLL----------------------SFP--------------ELAQLPQLKVLDLSCNNLSEVTL----P  470 (1081)
T ss_pred             hhHHHhhcCCcee----------------------ech--------------hhhhcCcceEEecccchhhhhhh----h
Confidence            5555555555544                      333              25678899999999999977632    2


Q ss_pred             CCcc-cccccCCccchhhHHHHHHHHhccccCceecCCCCCCCHHH
Q 000742         1224 NSCT-SSCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFSTQA 1268 (1313)
Q Consensus      1224 ~~~~-~~L~~L~Ls~n~l~~~l~~~l~~~~~L~~LdLs~N~l~~~~ 1268 (1313)
                      .... .+|++|||++|.=...-...|..++.+...+++-|+.++..
T Consensus       471 ~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~~~~d~~  516 (1081)
T KOG0618|consen  471 EALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLNNTPDGN  516 (1081)
T ss_pred             hhCCCcccceeeccCCcccccchhhhHHhhhhhheecccCCCCccc
Confidence            2233 69999999999844333456677788888888877554433

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=99.72  E-value=8.5e-18  Score=197.05  Aligned_cols=377  Identities=22%  Similarity=0.230  Sum_probs=314.8

Q ss_pred             CeEEecCCCCCcCCHHHHHHHhhcCCCcCEEEecCCCCCHHHHHHHHHHHHhcccCccceEEEccCCCCCHHHHHHHHhc
Q 000742          833 DEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICEC  912 (1313)
Q Consensus       833 ~~l~l~~~~l~~~~~~~l~~~L~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~~~~l~~L~Ls~n~l~~~~~~~l~~~  912 (1313)
                      ..+.|.+|.+.+.++..++.++..+++|..|+|++|.+++.+...+...+...  ...+++|++..|.++..+...+...
T Consensus        90 ~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~--~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   90 LHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLP--QCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             HHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccc--hHHHHHHHhhcccccccchHHHHHH
Confidence            45889999999999999999999999999999999999999999999876643  2346779999999999999999999


Q ss_pred             ccCCCCcCEEEecCCCCChhHHHHHHHHHhc----CCCCcEEEeecCCCCHHHHHHHHHHHhcCCC-ccEEEeCCCCCCC
Q 000742          913 PVLFTRLGVLNLSGNRLTDACGSYLSTILKN----CKVLYSLNIENCSITSRTIQKVADALGAEST-LAQLCIGYNSPVT  987 (1313)
Q Consensus       913 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~----~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~-L~~L~Ls~n~l~~  987 (1313)
                      +..+..|+.||++.|.+...|...++..+..    ..++++|+|++|.++...+..+..++...++ +..|+++.|. +.
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~-l~  246 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK-LG  246 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC-cc
Confidence            8889999999999999999999999999985    5589999999999999999999999999888 8889999999 77


Q ss_pred             hhhHHHHHHhhccC-CccceeecCCCCCChHHHHHHHHHh-hcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEc
Q 000742          988 GNAITNLLVKLDTL-KSFSELNLNGLKLSKPVVDRLCQLA-KTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDL 1065 (1313)
Q Consensus       988 ~~~~~~~~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 1065 (1313)
                      +.++..+...+..+ ..++.++++.|.+++.++..+.... ..+.++.|.|+.|.+++.+...+...+... ..+.++.+
T Consensus       247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~-~~~~~~~l  325 (478)
T KOG4308|consen  247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERK-TPLLHLVL  325 (478)
T ss_pred             hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhc-ccchhhhc
Confidence            77888888888888 8999999999999999999998744 466899999999999999999999888765 46777777


Q ss_pred             cCCCC-ChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCC
Q 000742         1066 SYCGL-ESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDT 1144 (1313)
Q Consensus      1066 s~n~l-~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~ 1144 (1313)
                      .+++. +..+...++........+....++++...+.+...+.....++...+..|++..+.+.+.+...++..+..+..
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~  405 (478)
T KOG4308|consen  326 GGTGKGTRGGTSVLAEADAQRQLLSELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEK  405 (478)
T ss_pred             cccCccchhHHHHHHHHHHHhhhhHHHHhhhccchHHHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcch
Confidence            76654 44444445555556666777888888899999989888888877779999999999999999999999999999


Q ss_pred             ccEEEccCCCCChhhhhhhcccccccCCcccccccccccccccccccccccccCCCCcccccccCCccchhhhccccCCC
Q 000742         1145 LEELNLADNASKELTLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFDN 1224 (1313)
Q Consensus      1145 L~~L~Ls~N~i~~~~~~~~l~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 1224 (1313)
                      +..++++.|...+.+.....+.                             .-.+. .++.++++.|.++...       
T Consensus       406 l~~~~l~~n~~~~~~~~~l~~~-----------------------------~~~~~-~~~~~~l~~~~~~~~~-------  448 (478)
T KOG4308|consen  406 LEILDLSLNSLHDEGAEVLTEQ-----------------------------LSRNG-SLKALRLSRNPITALG-------  448 (478)
T ss_pred             hhhhhhhcCccchhhHHHHHHh-----------------------------hhhcc-cchhhhhccChhhhcc-------
Confidence            9999999999888865544111                             12344 6777888888875441       


Q ss_pred             CcccccccCCccchhhHHHHHHHHhccccCceecCCCCCCCH
Q 000742         1225 SCTSSCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFST 1266 (1313)
Q Consensus      1225 ~~~~~L~~L~Ls~n~l~~~l~~~l~~~~~L~~LdLs~N~l~~ 1266 (1313)
                                      ++.........+..+..-+.+|.++-
T Consensus       449 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (478)
T KOG4308|consen  449 ----------------TEELQRALALNPGILAIRLRGNVIGR  474 (478)
T ss_pred             ----------------hHHHHHHHhcCCCcceeecccCcccc
Confidence                            34555666666777777777776654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.70  E-value=2.6e-15  Score=191.21  Aligned_cols=330  Identities=11%  Similarity=-0.036  Sum_probs=193.5

Q ss_pred             hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC--
Q 000742            6 MQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH--   83 (1313)
Q Consensus         6 ~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~--   83 (1313)
                      +.+.+|.+......+..|...++  +..++......|++++|...|++++....   +..........++.+|...+.  
T Consensus       356 ~~~~~~~~~~~~~y~~~~~~~~~--l~q~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~l~~~l~~~~~~~~~~~  430 (987)
T PRK09782        356 RNKAEALRLARLLYQQEPANLTR--LDQLTWQLMQNGQSREAADLLLQRYPFQG---DARLSQTLMARLASLLESHPYLA  430 (987)
T ss_pred             CchhHHHHHHHHHHhcCCCCHHH--HHHHHHHHHHcccHHHHHHHHHHhcCCCc---ccccCHHHHHHHHHHHHhCCccc
Confidence            44556666666665665666666  88999999999999999999999987521   111112334477777777655  


Q ss_pred             -hHHH----------------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHH
Q 000742           84 -FKDA----------------------LIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYF  140 (1313)
Q Consensus        84 -~~~A----------------------~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~  140 (1313)
                       ..+|                      ...+ ..+....+..+.. ....+++++|.++..         +++++|+..|
T Consensus       431 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~al~~~p~~-~~~~a~~~LG~~l~~---------~~~~eAi~a~  499 (987)
T PRK09782        431 TPAKVAILSKPLPLAEQRQWQSQLPGIADNC-PAIVRLLGDMSPS-YDAAAWNRLAKCYRD---------TLPGVALYAW  499 (987)
T ss_pred             chHHHHHhccccccchhHHHHhhhhhhhhhH-HHHHHhcccCCCC-CCHHHHHHHHHHHHh---------CCcHHHHHHH
Confidence             2222                      2222 2222222221110 023455666666542         4555566666


Q ss_pred             HHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHH
Q 000742          141 KSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYM  220 (1313)
Q Consensus       141 ~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~  220 (1313)
                      .+++...               |. ......+|.++...|++++|+..|++++...+.          ...+..+|.++.
T Consensus       500 ~~Al~~~---------------Pd-~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~----------~~a~~~la~all  553 (987)
T PRK09782        500 LQAEQRQ---------------PD-AWQHRAVAYQAYQVEDYATALAAWQKISLHDMS----------NEDLLAAANTAQ  553 (987)
T ss_pred             HHHHHhC---------------Cc-hHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC----------cHHHHHHHHHHH
Confidence            6665442               11 112444455555666666666666665433110          122455566666


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHH
Q 000742          221 ELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVK  300 (1313)
Q Consensus       221 ~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~  300 (1313)
                      ..|++++|+.+|+++++..+      .....+..++......|++++|+..|++++++.|. ...               
T Consensus       554 ~~Gd~~eA~~~l~qAL~l~P------~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a---------------  611 (987)
T PRK09782        554 AAGNGAARDRWLQQAEQRGL------GDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANA---------------  611 (987)
T ss_pred             HCCCHHHHHHHHHHHHhcCC------ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHH---------------
Confidence            66666666666666665432      22333334444444556666666666666666552 211               


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhH
Q 000742          301 KAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLS  380 (1313)
Q Consensus       301 ~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a  380 (1313)
                                                                +..++..+...+++++|+..+++++.+      .|..+
T Consensus       612 ------------------------------------------~~~LA~~l~~lG~~deA~~~l~~AL~l------~Pd~~  643 (987)
T PRK09782        612 ------------------------------------------YVARATIYRQRHNVPAAVSDLRAALEL------EPNNS  643 (987)
T ss_pred             ------------------------------------------HHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCH
Confidence                                                      233344445556666666666666554      35556


Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 000742          381 DSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEA  453 (1313)
Q Consensus       381 ~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~  453 (1313)
                      .++.++|.++...|++++|+..|++++++.|      ..+.+++++|.+|..+|++++|+.+|++|+++..+.
T Consensus       644 ~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P------~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~  710 (987)
T PRK09782        644 NYQAALGYALWDSGDIAQSREMLERAHKGLP------DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ  710 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence            7778888888888888888888888877643      556677888888888888888888888887777653

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.70  E-value=4.9e-14  Score=148.25  Aligned_cols=337  Identities=16%  Similarity=0.137  Sum_probs=274.3

Q ss_pred             hhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHH
Q 000742           68 LPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLA  147 (1313)
Q Consensus        68 ~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~  147 (1313)
                      +.-...-|.-++...++++|+..+ .+.+....+..   .....+-.+..+...+        |.|++++.+--..+..+
T Consensus         6 ~k~q~~~g~~Ly~s~~~~~al~~w-~~~L~~l~~~~---~Rf~~lG~l~~a~s~~--------g~y~~mL~~a~sqi~~a   73 (518)
T KOG1941|consen    6 TKKQIEKGLQLYQSNQTEKALQVW-TKVLEKLSDLM---GRFRVLGCLVTAHSEM--------GRYKEMLKFAVSQIDTA   73 (518)
T ss_pred             hHHHHHHHHhHhcCchHHHHHHHH-HHHHHHHHHHH---HHHHHhccchhhhhhh--------HHHHHHHHHHHHHHHHH
Confidence            344556677778889999999988 88887654443   3335566667777766        99999998888888887


Q ss_pred             HHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHH
Q 000742          148 QTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDK  227 (1313)
Q Consensus       148 ~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~  227 (1313)
                      .+..+..         ...+++.+++..+....++.+++.|-...+.+-..    .....-..+...+|.++..++.+++
T Consensus        74 ~~~~ds~---------~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt----~~~~~~gq~~l~~~~Ahlgls~fq~  140 (518)
T KOG1941|consen   74 RELEDSD---------FLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGT----RAGQLGGQVSLSMGNAHLGLSVFQK  140 (518)
T ss_pred             HHHHHHH---------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCC----CcccccchhhhhHHHHhhhHHHHHH
Confidence            7776543         66789999999999999999999998888776221    1112223567779999999999999


Q ss_pred             HHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHH
Q 000742          228 SREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMD  307 (1313)
Q Consensus       228 A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~  307 (1313)
                      ++++|++|+.++..++|......++..+|.+|...+++++|.-+..+|.++.....-.....         .|.++.   
T Consensus       141 ~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~---------kyr~~~---  208 (518)
T KOG1941|consen  141 ALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL---------KYRAMS---  208 (518)
T ss_pred             HHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH---------HHHHHH---
Confidence            99999999999999999989999999999999999999999999999999988765221110         111111   


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHH
Q 000742          308 ELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIG  387 (1313)
Q Consensus       308 ~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg  387 (1313)
                                                         +-.++-.++..|..-.|.++.+++.+++-+.++.+..+.....+|
T Consensus       209 -----------------------------------lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~a  253 (518)
T KOG1941|consen  209 -----------------------------------LYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFA  253 (518)
T ss_pred             -----------------------------------HHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence                                               223334455667778888999999999999999999999999999


Q ss_pred             HHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHH-----HHHHHHHHHHHHHHcCChhHHHHH
Q 000742          388 ESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAG-----ALDAFQEGYRIAVEANLPSVQLSA  462 (1313)
Q Consensus       388 ~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~-----A~~~~~kAl~i~~~~~~~~~~~~a  462 (1313)
                      .+|...|+.+.|..-|++|......+++.-.+..++...|.++....-..+     |+++-+++++++.+++.+....+.
T Consensus       254 DIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~  333 (518)
T KOG1941|consen  254 DIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKL  333 (518)
T ss_pred             HHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHH
Confidence            999999999999999999999999999999999999999999987765555     999999999999999999999999


Q ss_pred             HHhhHHHHHHhhcC
Q 000742          463 LENMHYSHMIRFDN  476 (1313)
Q Consensus       463 l~~L~~~~~~~~~~  476 (1313)
                      ...++.+|...+.+
T Consensus       334 hcrla~iYrs~gl~  347 (518)
T KOG1941|consen  334 HCRLASIYRSKGLQ  347 (518)
T ss_pred             HHHHHHHHHhccch
Confidence            99999999765444

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.69  E-value=3.4e-14  Score=167.10  Aligned_cols=351  Identities=14%  Similarity=0.111  Sum_probs=252.2

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHH
Q 000742           27 EARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLV  106 (1313)
Q Consensus        27 ~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~  106 (1313)
                      ++..+...|+..+..|++++|.+.+..++...+..      ..+|+.+|.+|..+|+.++|.... -.|-.+.|+..   
T Consensus       138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~------~~ay~tL~~IyEqrGd~eK~l~~~-llAAHL~p~d~---  207 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRN------PIAYYTLGEIYEQRGDIEKALNFW-LLAAHLNPKDY---  207 (895)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccc------hhhHHHHHHHHHHcccHHHHHHHH-HHHHhcCCCCh---
Confidence            45567788899999999999999999999988543      889999999999999999999998 88877777654   


Q ss_pred             HHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHH
Q 000742          107 EQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAK  186 (1313)
Q Consensus       107 ~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~  186 (1313)
                         .-|..++.....+        |.+++|.-+|.+|++.               .|.....+...+.+|.+.|++..|+
T Consensus       208 ---e~W~~ladls~~~--------~~i~qA~~cy~rAI~~---------------~p~n~~~~~ers~L~~~~G~~~~Am  261 (895)
T KOG2076|consen  208 ---ELWKRLADLSEQL--------GNINQARYCYSRAIQA---------------NPSNWELIYERSSLYQKTGDLKRAM  261 (895)
T ss_pred             ---HHHHHHHHHHHhc--------ccHHHHHHHHHHHHhc---------------CCcchHHHHHHHHHHHHhChHHHHH
Confidence               2477888888777        9999999999999988               3455678889999999999999999


Q ss_pred             HHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHH
Q 000742          187 KFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYD  266 (1313)
Q Consensus       187 ~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  266 (1313)
                      .-|.+++...+.    .+-...-..-...+..|...++-+.|++.++.++.....    ......+..++.+|....+++
T Consensus       262 ~~f~~l~~~~p~----~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~----~~~~ed~ni~ael~l~~~q~d  333 (895)
T KOG2076|consen  262 ETFLQLLQLDPP----VDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKD----EASLEDLNILAELFLKNKQSD  333 (895)
T ss_pred             HHHHHHHhhCCc----hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccc----cccccHHHHHHHHHHHhHHHH
Confidence            999999999763    122223334455688888899889999999999883321    233345668889999999999


Q ss_pred             HHHHHHHHHHHHHHH----------------------ccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742          267 EAILCYQKALNLAQS----------------------MEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMI  324 (1313)
Q Consensus       267 ~A~~~~~kal~~~~~----------------------~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~  324 (1313)
                      .|...........-+                      ..+....+..++..++-+..-...         ....+...+.
T Consensus       334 ~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e---------~~e~ll~~l~  404 (895)
T KOG2076|consen  334 KALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERE---------LLEALLHFLV  404 (895)
T ss_pred             HhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccc---------hHHHHHHHHH
Confidence            999888776651100                      000000001011111111100000         0001111111


Q ss_pred             HhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHH
Q 000742          325 IAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYT  404 (1313)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~  404 (1313)
                      ...-.+.+      ....+-+++..+...+.|..|+.++-....-     .....+.+|+.+|.+|..+|.+++|+++|+
T Consensus       405 ~~n~~~~d------~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-----~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~  473 (895)
T KOG2076|consen  405 EDNVWVSD------DVDLYLDLADALTNIGKYKEALRLLSPITNR-----EGYQNAFVWYKLARCYMELGEYEEAIEFYE  473 (895)
T ss_pred             HhcCChhh------hHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-----ccccchhhhHHHHHHHHHHhhHHHHHHHHH
Confidence            11111111      2233566777888888888888887766432     222336899999999999999999999999


Q ss_pred             HHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000742          405 KSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGY  447 (1313)
Q Consensus       405 kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl  447 (1313)
                      +++...|      ....+...|+.+|..+|+.++|++.++...
T Consensus       474 kvl~~~p------~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  474 KVLILAP------DNLDARITLASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             HHHhcCC------CchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence            9998765      556778999999999999999998887744

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=99.69  E-value=2.9e-17  Score=192.56  Aligned_cols=404  Identities=22%  Similarity=0.211  Sum_probs=291.2

Q ss_pred             CCHHHHHHHhhcCCCcCEEEecCCCCCHHHH---HHHHHHHHhcccCc--cceEEEccCCCCCHHHHHHHHhcccCCCCc
Q 000742          845 ISVTPLLNALHTHKTVALLDLSHNLLGNGTM---EKLQQFFISSCQNY--VDLTLDLHCNRFGPTTLFQICECPVLFTRL  919 (1313)
Q Consensus       845 ~~~~~l~~~L~~~~~L~~L~Ls~n~l~~~~~---~~L~~~l~~~~~~~--~l~~L~Ls~n~l~~~~~~~l~~~l~~~~~L  919 (1313)
                      ..+..+...+...+.+..+.++.+.+.+.+.   .....++. .....  .+..|.|.+|.+++.+...++..+..+++|
T Consensus        39 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L  117 (478)
T KOG4308|consen   39 DTCRDLRSLLRRNTTLTELVLQSCSLSGRGRCFVLELLELLR-EPLNKLASLLHLSLANNRLGDRGAEELAQALKTLPTL  117 (478)
T ss_pred             cchHHHHHhhhhccchhhhhhhhhhccccccchHHHHHHhhc-cccchhhhHHHhhhhhCccccchHHHHHHHhcccccH
Confidence            3344555555566677777777777766552   22222111 11111  167888999999999999999999999999


Q ss_pred             CEEEecCCCCChhHHHHHHHHHhcC-CCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHHHhh
Q 000742          920 GVLNLSGNRLTDACGSYLSTILKNC-KVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKL  998 (1313)
Q Consensus       920 ~~L~Ls~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l  998 (1313)
                      +.|+|++|.+++.|+..+...+... ..|++|.+..|.++..++..++..+..+..|+.|+++.|. +...+...+...+
T Consensus       118 ~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~-l~~~g~~~l~~~l  196 (478)
T KOG4308|consen  118 GQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNG-LIELGLLVLSQAL  196 (478)
T ss_pred             hHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcc-cchhhhHHHhhhh
Confidence            9999999999999999999999876 6799999999999999999999999999999999999998 4455555566666


Q ss_pred             c----cCCccceeecCCCCCChHHHHHHHHHhh-cCC-ccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCCh
Q 000742          999 D----TLKSFSELNLNGLKLSKPVVDRLCQLAK-TSC-LTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLES 1072 (1313)
Q Consensus       999 ~----~~~~L~~L~Ls~n~l~~~~~~~l~~l~~-~~~-L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 1072 (1313)
                      .    ...++++|.|++|.++...+..+..... .++ +..|++..|.++|.|+..+.+.+....+.+++++++.|.|++
T Consensus       197 ~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~  276 (478)
T KOG4308|consen  197 ESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITE  276 (478)
T ss_pred             hhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccc
Confidence            5    4779999999999999888887766433 344 777999999999999999999887665789999999999999


Q ss_pred             hHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCC-CCHHHHHHHHHHhhcCCCccEEEcc
Q 000742         1073 TCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQ-LGLAGVLQLIKALSENDTLEELNLA 1151 (1313)
Q Consensus      1073 ~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-i~~~g~~~l~~~l~~~~~L~~L~Ls 1151 (1313)
                      .++..+++.+..++.++.|.|+.|++++.+...+...+... +.+..+.+.++. .+..+...++.+......+..+..+
T Consensus       277 ~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (478)
T KOG4308|consen  277 KGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERK-TPLLHLVLGGTGKGTRGGTSVLAEADAQRQLLSELGIS  355 (478)
T ss_pred             cchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhc-ccchhhhccccCccchhHHHHHHHHHHHhhhhHHHHhh
Confidence            99999999999999999999999999999999988888753 356777777555 4444445556666666667777788


Q ss_pred             CCCCChhhhhhhcccccccCCcccccccccccccccccccccccccCCCC-cccccccCCccchhhhccc-cCCCCcccc
Q 000742         1152 DNASKELTLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCN-DLEVADSEDDKIRVESAAS-GFDNSCTSS 1229 (1313)
Q Consensus      1152 ~N~i~~~~~~~~l~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~-~~~~~~~~~ 1229 (1313)
                      +|...+.+.... ..                             ...+-+ .+..+++..+.+.+..... .........
T Consensus       356 ~~~~~~~~~~~~-~~-----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~  405 (478)
T KOG4308|consen  356 GNRVGEEGLALL-VL-----------------------------AKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEK  405 (478)
T ss_pred             hccchHHHHHHH-hh-----------------------------hhcccCcccchhhhhccccccHHHHHhhhhhhhcch
Confidence            888887755443 00                             001111 1333333333332221100 001111135


Q ss_pred             cccCCccchhhHH----HHHHHHhccccCceecCCCCCCCHHHHHHHHHHHhcCCC
Q 000742         1230 CQKNSSFECQFVQ----ELSSAIGMAKPLQLLDLSNNGFSTQAVKTLYCAWSSRSG 1281 (1313)
Q Consensus      1230 L~~L~Ls~n~l~~----~l~~~l~~~~~L~~LdLs~N~l~~~~~~~l~~~l~~~~~ 1281 (1313)
                      ++.++++.|....    .+......+-.+..++++.|.++..+...+......++.
T Consensus       406 l~~~~l~~n~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  461 (478)
T KOG4308|consen  406 LEILDLSLNSLHDEGAEVLTEQLSRNGSLKALRLSRNPITALGTEELQRALALNPG  461 (478)
T ss_pred             hhhhhhhcCccchhhHHHHHHhhhhcccchhhhhccChhhhcchHHHHHHHhcCCC
Confidence            5556666555442    233333333488888999999988888888888877664

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.67  E-value=3.8e-15  Score=189.74  Aligned_cols=221  Identities=10%  Similarity=-0.046  Sum_probs=153.9

Q ss_pred             hhHHHHHHHHHHHH---HhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHcc
Q 000742            6 MQMSEAKRAYRSAK---EEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLE   82 (1313)
Q Consensus         6 ~~~~~A~~~l~~a~---~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g   82 (1313)
                      +++.++...+..+.   ...|....+.+++.+|.++.. +++++|+..|.+++...+.       ......+|.++...|
T Consensus       452 ~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd-------~~~~L~lA~al~~~G  523 (987)
T PRK09782        452 SQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPD-------AWQHRAVAYQAYQVE  523 (987)
T ss_pred             hhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCc-------hHHHHHHHHHHHHCC
Confidence            44444443444333   333431134448888888876 7888888888888766532       123555666777888


Q ss_pred             ChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhh
Q 000742           83 HFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFL  162 (1313)
Q Consensus        83 ~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~  162 (1313)
                      ++++|+.+| ++++...+..       ..+..+|.++...        |++++|+.+|+++++..               
T Consensus       524 r~eeAi~~~-rka~~~~p~~-------~a~~~la~all~~--------Gd~~eA~~~l~qAL~l~---------------  572 (987)
T PRK09782        524 DYATALAAW-QKISLHDMSN-------EDLLAAANTAQAA--------GNGAARDRWLQQAEQRG---------------  572 (987)
T ss_pred             CHHHHHHHH-HHHhccCCCc-------HHHHHHHHHHHHC--------CCHHHHHHHHHHHHhcC---------------
Confidence            888888888 8765442221       2356777777766        88888888888887651               


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000742          163 KEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKI  242 (1313)
Q Consensus       163 p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~  242 (1313)
                      |.....+..++......|++++|+..|++++++.         |. ..++.++|.++...|++++|+..|++++.+.|  
T Consensus       573 P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~---------P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P--  640 (987)
T PRK09782        573 LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA---------PS-ANAYVARATIYRQRHNVPAAVSDLRAALELEP--  640 (987)
T ss_pred             CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC---------CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--
Confidence            1223445556666666788888888888888772         22 56778888888888888888888888888866  


Q ss_pred             chhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 000742          243 EHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQS  281 (1313)
Q Consensus       243 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~  281 (1313)
                          ..+.++.++|.++...|++++|+..|++++++.|.
T Consensus       641 ----d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~  675 (987)
T PRK09782        641 ----NNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD  675 (987)
T ss_pred             ----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence                66778888888888888888888888888887654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.66  E-value=2.8e-18  Score=182.74  Aligned_cols=177  Identities=16%  Similarity=0.060  Sum_probs=114.2

Q ss_pred             CccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHHHHHHHHHhcCCCc-cEEEccCCCCChHHHHHHHH
Q 000742         1030 CLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGI-LELNLGGNPIMKEGANALAS 1108 (1313)
Q Consensus      1030 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L-~~L~Ls~N~i~~~~~~~l~~ 1108 (1313)
                      +.+.|++++-++++.... +.++...  .-+...+++.|++...     |..+..+..+ +.+++++|.++ ..+..++.
T Consensus       363 ~tkiL~~s~~qlt~VPdE-Vfea~~~--~~Vt~VnfskNqL~el-----Pk~L~~lkelvT~l~lsnn~is-fv~~~l~~  433 (565)
T KOG0472|consen  363 TTKILDVSDKQLTLVPDE-VFEAAKS--EIVTSVNFSKNQLCEL-----PKRLVELKELVTDLVLSNNKIS-FVPLELSQ  433 (565)
T ss_pred             hhhhhcccccccccCCHH-HHHHhhh--cceEEEecccchHhhh-----hhhhHHHHHHHHHHHhhcCccc-cchHHHHh
Confidence            466677777666654322 2233221  1367778888877543     3333333332 33566666665 33444554


Q ss_pred             HhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEccCCCCChh-hhhhhcccccccCCccccccccccccccc
Q 000742         1109 LLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKEL-TLQQNLSSVNSENLQPALKTSDCVSKEVD 1187 (1313)
Q Consensus      1109 ~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~-~~~~~l~~l~~~~l~~n~~~~~~~~~~~~ 1187 (1313)
                      +-     +|..|+|++|-+.     .+|..+.....|+.|+|+.|++... .+-+.+..+..+..+.|++.+++.     
T Consensus       434 l~-----kLt~L~L~NN~Ln-----~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~-----  498 (565)
T KOG0472|consen  434 LQ-----KLTFLDLSNNLLN-----DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDP-----  498 (565)
T ss_pred             hh-----cceeeecccchhh-----hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccCh-----
Confidence            42     3888888888876     3666677777788888888887765 222223445555666688877664     


Q ss_pred             ccccccccccCCCCcccccccCCccchhhhccccCCCCcccccccCCccchhhH
Q 000742         1188 TDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFDNSCTSSCQKNSSFECQFV 1241 (1313)
Q Consensus      1188 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 1241 (1313)
                             ..+.++.+|..|||.+|.+..++|.   ..+| ++|+.|.|++|.|.
T Consensus       499 -------~~l~nm~nL~tLDL~nNdlq~IPp~---Lgnm-tnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  499 -------SGLKNMRNLTTLDLQNNDLQQIPPI---LGNM-TNLRHLELDGNPFR  541 (565)
T ss_pred             -------HHhhhhhhcceeccCCCchhhCChh---hccc-cceeEEEecCCccC
Confidence                   4577888899999999999888764   4455 78999999999887

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.66  E-value=1.7e-16  Score=194.32  Aligned_cols=269  Identities=20%  Similarity=0.141  Sum_probs=178.8

Q ss_pred             cceEEEccCCCCCHHHHHHHHhcccCCCCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHH
Q 000742          890 VDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADAL  969 (1313)
Q Consensus       890 ~l~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l  969 (1313)
                      +...|+|+.|+|+..+. .+.      ++|+.|+|++|.|+.     ++.   .+++|++|+|++|+|+.     ++.  
T Consensus       202 ~~~~LdLs~~~LtsLP~-~l~------~~L~~L~L~~N~Lt~-----LP~---lp~~Lk~LdLs~N~Lts-----LP~--  259 (788)
T PRK15387        202 GNAVLNVGESGLTTLPD-CLP------AHITTLVIPDNNLTS-----LPA---LPPELRTLEVSGNQLTS-----LPV--  259 (788)
T ss_pred             CCcEEEcCCCCCCcCCc-chh------cCCCEEEccCCcCCC-----CCC---CCCCCcEEEecCCccCc-----ccC--
Confidence            34678999998875433 222      478899999988885     332   24678889998888873     221  


Q ss_pred             hcCCCccEEEeCCCCCCChhhHHHHHHhhccCCccceeecCCCCCChHHHHHHHHHhhcCCccEEEccCCCCCCchHHHH
Q 000742          970 GAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQL 1049 (1313)
Q Consensus       970 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~i~~~~~~~l 1049 (1313)
                       ..++|++|+|++|.+ .     .++.   .+.+|+.|+|++|+++... .      ..++|+.|+|++|.|....    
T Consensus       260 -lp~sL~~L~Ls~N~L-~-----~Lp~---lp~~L~~L~Ls~N~Lt~LP-~------~p~~L~~LdLS~N~L~~Lp----  318 (788)
T PRK15387        260 -LPPGLLELSIFSNPL-T-----HLPA---LPSGLCKLWIFGNQLTSLP-V------LPPGLQELSVSDNQLASLP----  318 (788)
T ss_pred             -cccccceeeccCCch-h-----hhhh---chhhcCEEECcCCcccccc-c------cccccceeECCCCccccCC----
Confidence             236788888888873 1     1222   2246778888888876531 1      1245888888888776421    


Q ss_pred             HHHHhcCCCcccEEEccCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCH
Q 000742         1050 VESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGL 1129 (1313)
Q Consensus      1050 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~ 1129 (1313)
                       . +   ...|+.|++++|.|+..     +.   ...+|+.|+|++|.|+... .    .    ..+|+.|++++|.|+.
T Consensus       319 -~-l---p~~L~~L~Ls~N~L~~L-----P~---lp~~Lq~LdLS~N~Ls~LP-~----l----p~~L~~L~Ls~N~L~~  376 (788)
T PRK15387        319 -A-L---PSELCKLWAYNNQLTSL-----PT---LPSGLQELSVSDNQLASLP-T----L----PSELYKLWAYNNRLTS  376 (788)
T ss_pred             -C-C---cccccccccccCccccc-----cc---cccccceEecCCCccCCCC-C----C----Ccccceehhhcccccc
Confidence             1 1   13577778888877643     11   1146778888888776421 1    1    1247777777777762


Q ss_pred             HHHHHHHHHhhcCCCccEEEccCCCCChhhhhhhcccccccCCcccccccccccccccccccccccccCCCCcccccccC
Q 000742         1130 AGVLQLIKALSENDTLEELNLADNASKELTLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSE 1209 (1313)
Q Consensus      1130 ~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~~l~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls 1209 (1313)
                           ++..   ..+|+.|+|++|.|+..                      |.                ..++|+.|+++
T Consensus       377 -----LP~l---~~~L~~LdLs~N~Lt~L----------------------P~----------------l~s~L~~LdLS  410 (788)
T PRK15387        377 -----LPAL---PSGLKELIVSGNRLTSL----------------------PV----------------LPSELKELMVS  410 (788)
T ss_pred             -----Cccc---ccccceEEecCCcccCC----------------------CC----------------cccCCCEEEcc
Confidence                 3321   23577777777776632                      20                12468889999


Q ss_pred             CccchhhhccccCCCCcccccccCCccchhhHHHHHHHHhccccCceecCCCCCCCHHHHHHHHHHHh
Q 000742         1210 DDKIRVESAASGFDNSCTSSCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFSTQAVKTLYCAWS 1277 (1313)
Q Consensus      1210 ~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~l~~~l~~~~~L~~LdLs~N~l~~~~~~~l~~~l~ 1277 (1313)
                      +|.|++++.       ...+|+.|+|++|+|+ .+|..+..+++|+.|+|++|+|++..+..|.....
T Consensus       411 ~N~LssIP~-------l~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~s  470 (788)
T PRK15387        411 GNRLTSLPM-------LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITS  470 (788)
T ss_pred             CCcCCCCCc-------chhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHHhc
Confidence            999976532       2357889999999987 58999999999999999999999998888754433

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=2e-14  Score=160.65  Aligned_cols=276  Identities=18%  Similarity=0.194  Sum_probs=185.8

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHH
Q 000742           29 RWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQ  108 (1313)
Q Consensus        29 ~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~  108 (1313)
                      ......++.++..++|.+-.+.....++..+-     +..-.-..+| ++..+|+..+=...- .+.++..|...     
T Consensus       245 dll~~~ad~~y~~c~f~~c~kit~~lle~dpf-----h~~~~~~~ia-~l~el~~~n~Lf~ls-h~LV~~yP~~a-----  312 (611)
T KOG1173|consen  245 DLLAEKADRLYYGCRFKECLKITEELLEKDPF-----HLPCLPLHIA-CLYELGKSNKLFLLS-HKLVDLYPSKA-----  312 (611)
T ss_pred             HHHHHHHHHHHHcChHHHHHHHhHHHHhhCCC-----CcchHHHHHH-HHHHhcccchHHHHH-HHHHHhCCCCC-----
Confidence            34556666777777777777777766666532     2222333455 666666655544444 44444444332     


Q ss_pred             HHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000742          109 QRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKF  188 (1313)
Q Consensus       109 a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~  188 (1313)
                       ..|+.+|..|...        +++.+|..||.||..+               .|.++.+|...|..|...|+.++|+..
T Consensus       313 -~sW~aVg~YYl~i--------~k~seARry~SKat~l---------------D~~fgpaWl~fghsfa~e~EhdQAmaa  368 (611)
T KOG1173|consen  313 -LSWFAVGCYYLMI--------GKYSEARRYFSKATTL---------------DPTFGPAWLAFGHSFAGEGEHDQAMAA  368 (611)
T ss_pred             -cchhhHHHHHHHh--------cCcHHHHHHHHHHhhc---------------CccccHHHHHHhHHhhhcchHHHHHHH
Confidence             4567777777766        7777777777777666               335566777777777777777777777


Q ss_pred             HHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHH
Q 000742          189 LIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEA  268 (1313)
Q Consensus       189 ~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  268 (1313)
                      |..|-++.+..         ..-...+|.-|...++++.|.++|.+|+.++|      ..+.++..+|.+.+..+.|.+|
T Consensus       369 Y~tAarl~~G~---------hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P------~Dplv~~Elgvvay~~~~y~~A  433 (611)
T KOG1173|consen  369 YFTAARLMPGC---------HLPSLYLGMEYMRTNNLKLAEKFFKQALAIAP------SDPLVLHELGVVAYTYEEYPEA  433 (611)
T ss_pred             HHHHHHhccCC---------cchHHHHHHHHHHhccHHHHHHHHHHHHhcCC------CcchhhhhhhheeehHhhhHHH
Confidence            77777765542         11234567777777777777777777777766      6666777777777777777777


Q ss_pred             HHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHH
Q 000742          269 ILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIE  348 (1313)
Q Consensus       269 ~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~  348 (1313)
                      ..+|++++...+.......                                                  .....+.+||.
T Consensus       434 ~~~f~~~l~~ik~~~~e~~--------------------------------------------------~w~p~~~NLGH  463 (611)
T KOG1173|consen  434 LKYFQKALEVIKSVLNEKI--------------------------------------------------FWEPTLNNLGH  463 (611)
T ss_pred             HHHHHHHHHHhhhcccccc--------------------------------------------------chhHHHHhHHH
Confidence            7777777754444332211                                                  01123677888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Q 000742          349 KSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYK  411 (1313)
Q Consensus       349 ~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~  411 (1313)
                      .++..+.|+.|+.++++++.+.      +..+.+|..+|-+|..+|++++|+++|.||+.+.+
T Consensus       464 ~~Rkl~~~~eAI~~~q~aL~l~------~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p  520 (611)
T KOG1173|consen  464 AYRKLNKYEEAIDYYQKALLLS------PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP  520 (611)
T ss_pred             HHHHHhhHHHHHHHHHHHHHcC------CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence            8888899999999999998765      55669999999999999999999999999997765

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=1.1e-13  Score=154.52  Aligned_cols=373  Identities=16%  Similarity=0.117  Sum_probs=244.6

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 000742           31 ANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQR  110 (1313)
Q Consensus        31 ~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~  110 (1313)
                      +...|+..+..|+|+.|+.+|..|+.+.+.      ....|.+...+|..+|+|++|++.. .+..++.|..+      .
T Consensus         5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~------nhvlySnrsaa~a~~~~~~~al~da-~k~~~l~p~w~------k   71 (539)
T KOG0548|consen    5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPT------NHVLYSNRSAAYASLGSYEKALKDA-TKTRRLNPDWA------K   71 (539)
T ss_pred             HHHHHHhhcccccHHHHHHHHHHHHccCCC------ccchhcchHHHHHHHhhHHHHHHHH-HHHHhcCCchh------h
Confidence            446788999999999999999999998743      2567889999999999999999999 99999877654      6


Q ss_pred             HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcC----------
Q 000742          111 ACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELD----------  180 (1313)
Q Consensus       111 a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g----------  180 (1313)
                      .|...|..+..+        |+|++|+..|.+.++.               .|.....+..++.++....          
T Consensus        72 gy~r~Gaa~~~l--------g~~~eA~~ay~~GL~~---------------d~~n~~L~~gl~~a~~~~~~~~~~~~~p~  128 (539)
T KOG0548|consen   72 GYSRKGAALFGL--------GDYEEAILAYSEGLEK---------------DPSNKQLKTGLAQAYLEDYAADQLFTKPY  128 (539)
T ss_pred             HHHHhHHHHHhc--------ccHHHHHHHHHHHhhc---------------CCchHHHHHhHHHhhhHHHHhhhhccCcH
Confidence            799999999988        9999999999999987               3344555666666552110          


Q ss_pred             -----------CHHHHHHHHHHHHhHhhhhcc----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHH---------HHHH
Q 000742          181 -----------NLEEAKKFLIRGLEICNEEEV----SEDDDGRSRLHHNLGNVYMELRMWDKSREHI---------EQDI  236 (1313)
Q Consensus       181 -----------~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~---------~kal  236 (1313)
                                 ++-..-..|.+.++..++...    .-..+   .....+|......-....+....         .+-.
T Consensus       129 ~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~---r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~  205 (539)
T KOG0548|consen  129 FHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDP---RLMKADGQLKGVDELLFYASGIEILASMAEPCKQEH  205 (539)
T ss_pred             HHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccH---HHHHHHHHHhcCccccccccccccCCCCCCcccccC
Confidence                       011111223333333322100    00011   11111111100000000000000         0000


Q ss_pred             HHHHHhch------hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHH
Q 000742          237 IICKKIEH------CQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELK  310 (1313)
Q Consensus       237 ~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~  310 (1313)
                      .-.+...+      ....+...-.+|...++..++..|++.|.+++++. .........+.+|..+|.+.++.+..+++.
T Consensus       206 ~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~  284 (539)
T KOG0548|consen  206 NGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAV  284 (539)
T ss_pred             CCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHH
Confidence            00000011      12245678899999999999999999999999999 554555566668888888887777766654


Q ss_pred             HHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Q 000742          311 KEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASE------------------  372 (1313)
Q Consensus       311 ~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~------------------  372 (1313)
                      +.-.....-                +-..+.++..+|..+...++|+.++.+|++++.-.+.                  
T Consensus       285 E~gre~rad----------------~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e  348 (539)
T KOG0548|consen  285 EVGRELRAD----------------YKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAE  348 (539)
T ss_pred             HHhHHHHHH----------------HHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHH
Confidence            221111111                1113444566777888888888888888887754322                  


Q ss_pred             --hCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000742          373 --LCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIA  450 (1313)
Q Consensus       373 --~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~  450 (1313)
                        ....|..+.-...-|..+++.|+|.+|+.+|.+|++..      |..+..|.+.|.+|.++|.+..|+...++++++.
T Consensus       349 ~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~------P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~  422 (539)
T KOG0548|consen  349 RKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD------PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD  422 (539)
T ss_pred             HHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC------CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence              01122334555567999999999999999999999764      5788999999999999999999999999999983


Q ss_pred             HHcCChhHHHHHHHhhHHHHH
Q 000742          451 VEANLPSVQLSALENMHYSHM  471 (1313)
Q Consensus       451 ~~~~~~~~~~~al~~L~~~~~  471 (1313)
                           |. ...+|.+-|.++.
T Consensus       423 -----p~-~~kgy~RKg~al~  437 (539)
T KOG0548|consen  423 -----PN-FIKAYLRKGAALR  437 (539)
T ss_pred             -----ch-HHHHHHHHHHHHH
Confidence                 22 4456666676663

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.64  E-value=1e-12  Score=164.23  Aligned_cols=423  Identities=10%  Similarity=0.022  Sum_probs=250.0

Q ss_pred             chhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742            4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH   83 (1313)
Q Consensus         4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~   83 (1313)
                      .+|+++.|+..|+++.+.+|....+  ...+..++...|++++|+.++++++  .    +.+.....+..+|.+|..+|+
T Consensus        46 r~Gd~~~Al~~L~qaL~~~P~~~~a--v~dll~l~~~~G~~~~A~~~~eka~--~----p~n~~~~~llalA~ly~~~gd  117 (822)
T PRK14574         46 RAGDTAPVLDYLQEESKAGPLQSGQ--VDDWLQIAGWAGRDQEVIDVYERYQ--S----SMNISSRGLASAARAYRNEKR  117 (822)
T ss_pred             hCCCHHHHHHHHHHHHhhCccchhh--HHHHHHHHHHcCCcHHHHHHHHHhc--c----CCCCCHHHHHHHHHHHHHcCC
Confidence            3566777777777777776665322  1256666666677777777777776  1    222223444445667777777


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhH
Q 000742           84 FKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLK  163 (1313)
Q Consensus        84 ~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p  163 (1313)
                      |++|++.| +++++..|+..      .++..++..|...        ++.++|++.++++.....               
T Consensus       118 yd~Aiely-~kaL~~dP~n~------~~l~gLa~~y~~~--------~q~~eAl~~l~~l~~~dp---------------  167 (822)
T PRK14574        118 WDQALALW-QSSLKKDPTNP------DLISGMIMTQADA--------GRGGVVLKQATELAERDP---------------  167 (822)
T ss_pred             HHHHHHHH-HHHHhhCCCCH------HHHHHHHHHHhhc--------CCHHHHHHHHHHhcccCc---------------
Confidence            77777777 77777766553      2344556666655        677777777766655511               


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000742          164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIE  243 (1313)
Q Consensus       164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~  243 (1313)
                      . ...+..++.++...+++.+|++.++++++..+         ....++..+..+....|-...|.+..++--..+....
T Consensus       168 ~-~~~~l~layL~~~~~~~~~AL~~~ekll~~~P---------~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~  237 (822)
T PRK14574        168 T-VQNYMTLSYLNRATDRNYDALQASSEAVRLAP---------TSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEH  237 (822)
T ss_pred             c-hHHHHHHHHHHHhcchHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHH
Confidence            1 11224445555556666667777777777633         2345556666666667766666655554322221100


Q ss_pred             h---hhhHHHHHHHHHHHHH--HhcCH---HHHHHHHHHHHHHHHHccChhHHH-------HHHHHhHHHHHHHHHHHHH
Q 000742          244 H---CQGEAKGYINLGELHY--RVQKY---DEAILCYQKALNLAQSMEDEDALA-------SQIDQNIETVKKAIEVMDE  308 (1313)
Q Consensus       244 ~---~~~~~~~~~~la~~~~--~~g~~---~~A~~~~~kal~~~~~~~~~~~~~-------~~~~~~lg~~~~a~~~~~~  308 (1313)
                      .   ..+.+.-....+....  ...++   +.|+.-+++.+...+..+......       -.++..++.+.+++..|+.
T Consensus       238 ~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~  317 (822)
T PRK14574        238 YRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEA  317 (822)
T ss_pred             HHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            0   0011111111111111  11122   334444444444333333221111       1145566667777777766


Q ss_pred             HHHHHH---H-HHHHHHHHHHhhCCchHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742          309 LKKEEQ---N-LKKLTRNMIIAKGTSQERKYLLQQNAS--------------LDRLIEKSSMIFAWLKHCEYAKRKKRIA  370 (1313)
Q Consensus       309 a~~~~~---~-~~~l~~~l~~~~~~~~~a~~~~~~~~~--------------l~~L~~~~~~~~~~~~A~~~~~~a~~i~  370 (1313)
                      ......   . ..............|+.+..++.+...              ...|...+...++|++|..+.++...-.
T Consensus       318 l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~  397 (822)
T PRK14574        318 MEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQT  397 (822)
T ss_pred             hhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence            653221   1 112222333456778888887776421              2567788899999999999999887632


Q ss_pred             H-Hh--------CCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 000742          371 S-EL--------CDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALD  441 (1313)
Q Consensus       371 ~-~~--------~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~  441 (1313)
                      . ..        ...++...+...++.++...|++.+|.+.+++.+...|      ........+|.++...|.+.+|..
T Consensus       398 p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP------~n~~l~~~~A~v~~~Rg~p~~A~~  471 (822)
T PRK14574        398 PYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAP------ANQNLRIALASIYLARDLPRKAEQ  471 (822)
T ss_pred             CcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHhcCCHHHHHH
Confidence            2 01        23345578888899999999999999999999987754      677788999999999999999999


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHhhHHHHHHhhcCHHHHHHHHHHH
Q 000742          442 AFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEARRLQHEI  487 (1313)
Q Consensus       442 ~~~kAl~i~~~~~~~~~~~~al~~L~~~~~~~~~~~~~a~~~~e~~  487 (1313)
                      .++.+..+..+      ...+...++..++. .++..+|....+.+
T Consensus       472 ~~k~a~~l~P~------~~~~~~~~~~~al~-l~e~~~A~~~~~~l  510 (822)
T PRK14574        472 ELKAVESLAPR------SLILERAQAETAMA-LQEWHQMELLTDDV  510 (822)
T ss_pred             HHHHHhhhCCc------cHHHHHHHHHHHHh-hhhHHHHHHHHHHH
Confidence            99888776322      23455566665543 34445554444333

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.61  E-value=2.4e-13  Score=160.08  Aligned_cols=366  Identities=15%  Similarity=0.155  Sum_probs=267.3

Q ss_pred             hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh
Q 000742            5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF   84 (1313)
Q Consensus         5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~   84 (1313)
                      .|++++|.+++.++++.+|....+  |+.||.+|.++|+.++|+..+-.|-.+.++.      ...|..++.....+|++
T Consensus       152 rg~~eeA~~i~~EvIkqdp~~~~a--y~tL~~IyEqrGd~eK~l~~~llAAHL~p~d------~e~W~~ladls~~~~~i  223 (895)
T KOG2076|consen  152 RGDLEEAEEILMEVIKQDPRNPIA--YYTLGEIYEQRGDIEKALNFWLLAAHLNPKD------YELWKRLADLSEQLGNI  223 (895)
T ss_pred             hCCHHHHHHHHHHHHHhCccchhh--HHHHHHHHHHcccHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHhcccH
Confidence            488999999999999999998888  9999999999999999999988887665332      58899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHH
Q 000742           85 KDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKE  164 (1313)
Q Consensus        85 ~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~  164 (1313)
                      ++|.-+| .+|++..|..-      ...+..+.+|..+        |+...|...|.+.+.+.....          ...
T Consensus       224 ~qA~~cy-~rAI~~~p~n~------~~~~ers~L~~~~--------G~~~~Am~~f~~l~~~~p~~d----------~er  278 (895)
T KOG2076|consen  224 NQARYCY-SRAIQANPSNW------ELIYERSSLYQKT--------GDLKRAMETFLQLLQLDPPVD----------IER  278 (895)
T ss_pred             HHHHHHH-HHHHhcCCcch------HHHHHHHHHHHHh--------ChHHHHHHHHHHHHhhCCchh----------HHH
Confidence            9999999 99999987662      4567888899888        999999999999998844110          112


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------
Q 000742          165 YIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDII-------  237 (1313)
Q Consensus       165 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~-------  237 (1313)
                      .-......+..+...++-+.|++.++.++....       .......+..++.+|....+++.|......-..       
T Consensus       279 ~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~-------~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~  351 (895)
T KOG2076|consen  279 IEDLIRRVAHYFITHNERERAAKALEGALSKEK-------DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDD  351 (895)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc-------ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCCh
Confidence            334445567888888888999999999988422       222334556788999999999999988877665       


Q ss_pred             ---------------HHHHhchhhhHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHccChhHHHHHHHHhHHHHH
Q 000742          238 ---------------ICKKIEHCQGEAK-GYINLGELHYRVQKYDEAILCYQKALNLA-QSMEDEDALASQIDQNIETVK  300 (1313)
Q Consensus       238 ---------------~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~kal~~~-~~~~~~~~~~~~~~~~lg~~~  300 (1313)
                                     +.+-..+...... ++..++.++.+.++..+++..+..--... ....+....++.++.+.|.+.
T Consensus       352 ~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~  431 (895)
T KOG2076|consen  352 SEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYK  431 (895)
T ss_pred             hhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHH
Confidence                           1111111122223 36667777777777777776654322211 122233344556677777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhH
Q 000742          301 KAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLS  380 (1313)
Q Consensus       301 ~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a  380 (1313)
                      .|+.++..+....              .        .+.+..+-.+|..+...+.|+.|+++|++++...      |...
T Consensus       432 ~Al~~l~~i~~~~--------------~--------~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~------p~~~  483 (895)
T KOG2076|consen  432 EALRLLSPITNRE--------------G--------YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA------PDNL  483 (895)
T ss_pred             HHHHHHHHHhcCc--------------c--------ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC------CCch
Confidence            7777766553110              0        0113447788999999999999999999998754      5566


Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH---HhCCchhHHHHHHHHHHHHHHcCCHHH
Q 000742          381 DSFLVIGESYQKLRKFNKAIKWYTKSWEMYK---SIGNLEGQALAKVNMGNVLDSNGDWAG  438 (1313)
Q Consensus       381 ~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~---~~~~~~~~~~~~~~lg~~y~~~g~~~~  438 (1313)
                      ++...|+.+|.++|++++|++.+++...-..   +....+.......+...+|.+.|+.++
T Consensus       484 D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~  544 (895)
T KOG2076|consen  484 DARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE  544 (895)
T ss_pred             hhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence            8889999999999999999988887552110   111123456677888999999999887

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.60  E-value=7.8e-17  Score=172.01  Aligned_cols=382  Identities=16%  Similarity=0.126  Sum_probs=201.7

Q ss_pred             CeEEecCCCCCcCCHHHHHHHhhcCCCcCEEEecCCCCCHHHHHHHHHHHHhcccCccceEEEccCCCCCHHHHHHHHhc
Q 000742          833 DEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICEC  912 (1313)
Q Consensus       833 ~~l~l~~~~l~~~~~~~l~~~L~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~~~~l~~L~Ls~n~l~~~~~~~l~~~  912 (1313)
                      .++.|..|+|+.+.-.    +++..++|+.||||+|.|+..+..++..+-.      -+..+++++|+|++..-..|..+
T Consensus        70 veirLdqN~I~~iP~~----aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~------l~~Lvlyg~NkI~~l~k~~F~gL  139 (498)
T KOG4237|consen   70 VEIRLDQNQISSIPPG----AFKTLHRLRRLDLSKNNISFIAPDAFKGLAS------LLSLVLYGNNKITDLPKGAFGGL  139 (498)
T ss_pred             eEEEeccCCcccCChh----hccchhhhceecccccchhhcChHhhhhhHh------hhHHHhhcCCchhhhhhhHhhhH
Confidence            5789999999887644    4556689999999999987755555444210      01344667799999998888886


Q ss_pred             ccCCCCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHH-HHhcCCCccEEEeCCCCCCChhhH
Q 000742          913 PVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVAD-ALGAESTLAQLCIGYNSPVTGNAI  991 (1313)
Q Consensus       913 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~  991 (1313)
                          ..|+.|.|.-|.+...    ....|..+++|..|.|.+|.+.     .++. .|.....++++.+..|+++.+-.+
T Consensus       140 ----~slqrLllNan~i~Ci----r~~al~dL~~l~lLslyDn~~q-----~i~~~tf~~l~~i~tlhlA~np~icdCnL  206 (498)
T KOG4237|consen  140 ----SSLQRLLLNANHINCI----RQDALRDLPSLSLLSLYDNKIQ-----SICKGTFQGLAAIKTLHLAQNPFICDCNL  206 (498)
T ss_pred             ----HHHHHHhcChhhhcch----hHHHHHHhhhcchhcccchhhh-----hhccccccchhccchHhhhcCcccccccc
Confidence                7899999999998876    6778888889999999998776     3444 556677888888888874332211


Q ss_pred             HHHHH-------hhccCCc----------------------ccee---ecCCCCCChHHHHHHHHHhhcCCccEEEccCC
Q 000742          992 TNLLV-------KLDTLKS----------------------FSEL---NLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCT 1039 (1313)
Q Consensus       992 ~~~~~-------~l~~~~~----------------------L~~L---~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n 1039 (1313)
                      ..+..       .++....                      ++.+   -.+.+......+.. + +.+.++|+.|+|++|
T Consensus       207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~-c-f~~L~~L~~lnlsnN  284 (498)
T KOG4237|consen  207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAK-C-FKKLPNLRKLNLSNN  284 (498)
T ss_pred             chhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHH-H-HhhcccceEeccCCC
Confidence            11110       0000000                      0000   00111111111100 0 223345555555555


Q ss_pred             CCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeE
Q 000742         1040 NLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKV 1119 (1313)
Q Consensus      1040 ~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~ 1119 (1313)
                      .|+.     +.++.+....+++.|.|..|+|....    ...|.++..|+.|+|.+|+|+...+.++-.+.     .|.+
T Consensus       285 ~i~~-----i~~~aFe~~a~l~eL~L~~N~l~~v~----~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~-----~l~~  350 (498)
T KOG4237|consen  285 KITR-----IEDGAFEGAAELQELYLTRNKLEFVS----SGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF-----SLST  350 (498)
T ss_pred             ccch-----hhhhhhcchhhhhhhhcCcchHHHHH----HHhhhccccceeeeecCCeeEEEecccccccc-----eeee
Confidence            5543     22333333345555555555554331    22344555555555555555544443333322     2555


Q ss_pred             EEeecCCCCHH-HHHHHHHHhhcC-----------CCccEEEccCCCCChhhhhhhcccccccCCccccccccccccccc
Q 000742         1120 LVLSKCQLGLA-GVLQLIKALSEN-----------DTLEELNLADNASKELTLQQNLSSVNSENLQPALKTSDCVSKEVD 1187 (1313)
Q Consensus      1120 L~Ls~n~i~~~-g~~~l~~~l~~~-----------~~L~~L~Ls~N~i~~~~~~~~l~~l~~~~l~~n~~~~~~~~~~~~ 1187 (1313)
                      |+|-.|.+.-. -+..+.+++++.           ..++.+.++.+.+++..-... ....+...+.|...+.+. ....
T Consensus       351 l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~-ee~~~~~s~~cP~~c~c~-~tVv  428 (498)
T KOG4237|consen  351 LNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGP-EELGCLTSSPCPPPCTCL-DTVV  428 (498)
T ss_pred             eehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCc-cccCCCCCCCCCCCcchh-hhhH
Confidence            55555543211 112234444331           135566666666555422111 222233334444333221 1111


Q ss_pred             cccccccccc-CCC-CcccccccCCccchhhhccccCCCCcccccccCCccchhhHHHHHHHHhccccCceecCCCC
Q 000742         1188 TDQHGLFAMN-TDC-NDLEVADSEDDKIRVESAASGFDNSCTSSCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNN 1262 (1313)
Q Consensus      1188 ~~~~~~~~~~-~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~l~~~l~~~~~L~~LdLs~N 1262 (1313)
                      .|..-.-..+ ... ..-..|.+.+|.++.++..      -..+| .++|++|+++.---..|.++.+|..|-||+|
T Consensus       429 RcSnk~lk~lp~~iP~d~telyl~gn~~~~vp~~------~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  429 RCSNKLLKLLPRGIPVDVTELYLDGNAITSVPDE------LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             hhcccchhhcCCCCCchhHHHhcccchhcccCHH------HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            1111000000 000 1234556777777655331      12355 6777777776544556778888888888876

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.60  E-value=4.1e-12  Score=168.98  Aligned_cols=396  Identities=12%  Similarity=0.020  Sum_probs=267.6

Q ss_pred             HhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Q 000742           20 EEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELA   99 (1313)
Q Consensus        20 ~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~   99 (1313)
                      ...+....+..+...|..+...|+++.+..++... .....    ..........+.++...|++++|..++ .++.+..
T Consensus       366 ~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~l-p~~~~----~~~~~l~~~~a~~~~~~g~~~~a~~~l-~~a~~~~  439 (903)
T PRK04841        366 AAGDAQLLRDILLQHGWSLFNQGELSLLEECLNAL-PWEVL----LENPRLVLLQAWLAQSQHRYSEVNTLL-ARAEQEL  439 (903)
T ss_pred             HCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhC-CHHHH----hcCcchHHHHHHHHHHCCCHHHHHHHH-HHHHHhc
Confidence            33444444555556666666677776666655433 11100    111233456788888999999999999 9887765


Q ss_pred             HHhc---CHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHH
Q 000742          100 KDAS---DLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQ  176 (1313)
Q Consensus       100 ~~~~---~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y  176 (1313)
                      ....   +......+...+|.++...        |++++|..+++++++....   ..       ......+...+|.++
T Consensus       440 ~~~~~~~~~~~~~~~~~~~a~~~~~~--------g~~~~A~~~~~~al~~~~~---~~-------~~~~~~a~~~lg~~~  501 (903)
T PRK04841        440 KDRNIELDGTLQAEFNALRAQVAIND--------GDPEEAERLAELALAELPL---TW-------YYSRIVATSVLGEVH  501 (903)
T ss_pred             cccCcccchhHHHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHhcCCC---cc-------HHHHHHHHHHHHHHH
Confidence            4322   2222344555677777766        9999999999999875211   10       123456778899999


Q ss_pred             HHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchh--hhHHHHHHH
Q 000742          177 MELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHC--QGEAKGYIN  254 (1313)
Q Consensus       177 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~--~~~~~~~~~  254 (1313)
                      ...|++++|..++++++......   +.......++.++|.++...|++++|..++++++.+....+..  ......+..
T Consensus       502 ~~~G~~~~A~~~~~~al~~~~~~---g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  578 (903)
T PRK04841        502 HCKGELARALAMMQQTEQMARQH---DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRI  578 (903)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhh---cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence            99999999999999999988764   4455566788999999999999999999999999998765421  223455678


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHH
Q 000742          255 LGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERK  334 (1313)
Q Consensus       255 la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~  334 (1313)
                      +|.+++..|++++|...+++++.+........  ....+..++.+....+.++.+.........+....    +......
T Consensus       579 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~----~~~~~~~  652 (903)
T PRK04841        579 RAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ--QLQCLAMLAKISLARGDLDNARRYLNRLENLLGNG----RYHSDWI  652 (903)
T ss_pred             HHHHHHHhcCHHHHHHHHHHhHHhhhccCchH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc----cccHhHh
Confidence            89999999999999999999999877544221  22244455555555555555554444333322111    0000000


Q ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHh
Q 000742          335 YLLQQNASLDR-LIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSI  413 (1313)
Q Consensus       335 ~~~~~~~~l~~-L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~  413 (1313)
                      .      .... ....+...++.+.|..+..+.....  ..........+..+|.++...|++++|..+++++++.....
T Consensus       653 ~------~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~--~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~  724 (903)
T PRK04841        653 A------NADKVRLIYWQMTGDKEAAANWLRQAPKPE--FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSL  724 (903)
T ss_pred             h------HHHHHHHHHHHHCCCHHHHHHHHHhcCCCC--CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            0      0000 0122233455666666654433210  01111122345679999999999999999999999998887


Q ss_pred             CCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh
Q 000742          414 GNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLP  456 (1313)
Q Consensus       414 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~  456 (1313)
                      +.....+.++..+|.+|...|++++|..++++|++++...+..
T Consensus       725 g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~~  767 (903)
T PRK04841        725 RLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGFI  767 (903)
T ss_pred             CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccchh
Confidence            7777788899999999999999999999999999998776653

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=99.60  E-value=1e-14  Score=148.09  Aligned_cols=293  Identities=16%  Similarity=0.108  Sum_probs=185.1

Q ss_pred             CcCCHHHHHHHhhcCCCcCEEEecCCCCCHHHHHHHHHHHHhcccCccceEEEccCCC---CCHH---HHHHHHhcccCC
Q 000742          843 QDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNR---FGPT---TLFQICECPVLF  916 (1313)
Q Consensus       843 ~~~~~~~l~~~L~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~~~~l~~L~Ls~n~---l~~~---~~~~l~~~l~~~  916 (1313)
                      +..++.+....|.....++.+|||+|.|+.+.+..|++.+..   ..+|...+++.--   ..+.   .+..+...+..|
T Consensus        15 T~eDvk~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~---~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkc   91 (388)
T COG5238          15 TKEDVKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIAN---VRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKC   91 (388)
T ss_pred             ccchhhHHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhh---hcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcC
Confidence            445566777777667889999999999999999999887653   3455666665432   2222   233444555567


Q ss_pred             CCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHHH
Q 000742          917 TRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLV  996 (1313)
Q Consensus       917 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~  996 (1313)
                      ++|+..+||.|-|+......+...+.+.+.|.+|.|++|+++..+-..++.++.++        .+|.            
T Consensus        92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~l--------a~nK------------  151 (388)
T COG5238          92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHL--------AYNK------------  151 (388)
T ss_pred             CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHH--------HHHh------------
Confidence            88888888888887776667777777777788888888888776666666655432        1111            


Q ss_pred             hhccCCccceeecCCCCCChHHHHHHHHHhhc-CCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHH
Q 000742          997 KLDTLKSFSELNLNGLKLSKPVVDRLCQLAKT-SCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCI 1075 (1313)
Q Consensus       997 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 1075 (1313)
                      ....-|.|+.+....|++..-.....+..... ..|+++.+..|.|.+.|+..++-.-...+.+|+.|||..|.+|-.|.
T Consensus       152 Kaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS  231 (388)
T COG5238         152 KAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGS  231 (388)
T ss_pred             hhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhH
Confidence            01122344444444444433323333333332 35777777777777777666543222234678888888888888888


Q ss_pred             HHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcC-CCCceeEEEeecCCCCHHHHHH--HHHHh-hcCCCccEEEcc
Q 000742         1076 HKFTASVSLVHGILELNLGGNPIMKEGANALASLLMN-PQCCLKVLVLSKCQLGLAGVLQ--LIKAL-SENDTLEELNLA 1151 (1313)
Q Consensus      1076 ~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~-~~~~L~~L~Ls~n~i~~~g~~~--l~~~l-~~~~~L~~L~Ls 1151 (1313)
                      ..++.+++..+.|++|.+..|-++..|...+...+.. ...+|..|-+.+|.+....+..  +.... ...|-|..|.+.
T Consensus       232 ~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~n  311 (388)
T COG5238         232 RYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERN  311 (388)
T ss_pred             HHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHc
Confidence            8888888887778888888888877777766555422 1224777877777654332211  22222 235667778888


Q ss_pred             CCCCChh
Q 000742         1152 DNASKEL 1158 (1313)
Q Consensus      1152 ~N~i~~~ 1158 (1313)
                      +|+|...
T Consensus       312 gNr~~E~  318 (388)
T COG5238         312 GNRIKEL  318 (388)
T ss_pred             cCcchhH
Confidence            8988876

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=99.59  E-value=1.7e-14  Score=146.52  Aligned_cols=240  Identities=20%  Similarity=0.214  Sum_probs=171.9

Q ss_pred             CCCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCH-------HHHHHHHHHHhcCCCccEEEeCCCCCCCh
Q 000742          916 FTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITS-------RTIQKVADALGAESTLAQLCIGYNSPVTG  988 (1313)
Q Consensus       916 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~-------~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  988 (1313)
                      +..+++++||+|.|+...+..++..+.+-.+|+..+++.- +++       .....+..+|-.||.|+..+||.|. ++.
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA-fg~  106 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA-FGS  106 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc-cCc
Confidence            3566666666666666666666666666666666666553 221       1223344555666666666666666 455


Q ss_pred             hhHHHHHHhhccCCccceeecCCCCCChHHHHHHHH----------HhhcCCccEEEccCCCCCCchHHHHHHHHhcCCC
Q 000742          989 NAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQ----------LAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQ 1058 (1313)
Q Consensus       989 ~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~----------l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 1058 (1313)
                      .....+...+++.+.|.+|.|++|.++..+...++.          ....|.|++.....|++........+..+.. ..
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~s-h~  185 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES-HE  185 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHh-hc
Confidence            545555555566666666666666666554444442          2234779999999999977655555555543 36


Q ss_pred             cccEEEccCCCCChhHHHHHH-HHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHH
Q 000742         1059 ESVKLDLSYCGLESTCIHKFT-ASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIK 1137 (1313)
Q Consensus      1059 ~L~~L~Ls~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~ 1137 (1313)
                      .|+.+.+-.|.|...|+..+. ..+..+.+|+.|||..|.++-.|...++.++...+ .|+.|.+.+|-++..|...+..
T Consensus       186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~-~lrEL~lnDClls~~G~~~v~~  264 (388)
T COG5238         186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN-LLRELRLNDCLLSNEGVKSVLR  264 (388)
T ss_pred             CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc-hhhhccccchhhccccHHHHHH
Confidence            799999999999999988764 36677999999999999999999999999997644 4899999999999999998888


Q ss_pred             Hhhc--CCCccEEEccCCCCChhh
Q 000742         1138 ALSE--NDTLEELNLADNASKELT 1159 (1313)
Q Consensus      1138 ~l~~--~~~L~~L~Ls~N~i~~~~ 1159 (1313)
                      .+..  .++|..|-+.+|.+....
T Consensus       265 ~f~e~~~p~l~~L~~~Yne~~~~~  288 (388)
T COG5238         265 RFNEKFVPNLMPLPGDYNERRGGI  288 (388)
T ss_pred             HhhhhcCCCccccccchhhhcCce
Confidence            7754  679999999999877653

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=9.1e-14  Score=149.47  Aligned_cols=368  Identities=16%  Similarity=0.134  Sum_probs=241.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcC
Q 000742           25 QEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASD  104 (1313)
Q Consensus        25 ~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~  104 (1313)
                      ..++.-....|..++...+|.+|+..|..|++..+..      +..|.+.+..+...|+|++|.-.+ ++.+++.+....
T Consensus        46 ~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~------a~yy~nRAa~~m~~~~~~~a~~da-r~~~r~kd~~~k  118 (486)
T KOG0550|consen   46 AQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN------ASYYSNRAATLMMLGRFEEALGDA-RQSVRLKDGFSK  118 (486)
T ss_pred             HHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccc------hhhhchhHHHHHHHHhHhhcccch-hhheecCCCccc
Confidence            4455566788999999999999999999999998543      788999999999999999999999 999988766542


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHH--HHHHHhccCCCCCc-chhhHHHHHHHHHHHHHHHHcCC
Q 000742          105 LVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAM--KLAQTLKENPATSR-SSFLKEYIDAHNNIGMLQMELDN  181 (1313)
Q Consensus       105 ~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al--~l~~~~~~~~~~~~-~~~~p~~~~~~~~la~~y~~~g~  181 (1313)
                            .+...+.++..+        ++..+|...++..-  ..+..+....+... .+-.|....+-..-+.++...|+
T Consensus       119 ------~~~r~~~c~~a~--------~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~  184 (486)
T KOG0550|consen  119 ------GQLREGQCHLAL--------SDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGD  184 (486)
T ss_pred             ------cccchhhhhhhh--------HHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhccc
Confidence                  456667777666        66666665554211  11111111100000 01125566777788899999999


Q ss_pred             HHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhch------hhhHHHHHHHH
Q 000742          182 LEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEH------CQGEAKGYINL  255 (1313)
Q Consensus       182 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~------~~~~~~~~~~l  255 (1313)
                      +++|+..--..+++         ++....+++..|.+++..++.+.|+.+|++++.+.|....      .+.....+..-
T Consensus       185 ~~~a~~ea~~ilkl---------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~  255 (486)
T KOG0550|consen  185 YDEAQSEAIDILKL---------DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKER  255 (486)
T ss_pred             chhHHHHHHHHHhc---------ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhh
Confidence            99999988887777         4557788999999999999999999999999999886532      23445567777


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHH
Q 000742          256 GELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKY  335 (1313)
Q Consensus       256 a~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~  335 (1313)
                      |.-.++.|+|.+|.+.|..|+.++|.....   .+.+|.+.+.+.--++..                             
T Consensus       256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~---naklY~nra~v~~rLgrl-----------------------------  303 (486)
T KOG0550|consen  256 GNDAFKNGNYRKAYECYTEALNIDPSNKKT---NAKLYGNRALVNIRLGRL-----------------------------  303 (486)
T ss_pred             hhhHhhccchhHHHHHHHHhhcCCccccch---hHHHHHHhHhhhcccCCc-----------------------------
Confidence            889999999999999999999999975443   233444444433333322                             


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCC
Q 000742          336 LLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGN  415 (1313)
Q Consensus       336 ~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~  415 (1313)
                                           .+|+.-.+.++.|      .+....+|...|.+|..++++++|+++|+++++.....  
T Consensus       304 ---------------------~eaisdc~~Al~i------D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~--  354 (486)
T KOG0550|consen  304 ---------------------REAISDCNEALKI------DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDC--  354 (486)
T ss_pred             ---------------------hhhhhhhhhhhhc------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--
Confidence                                 2222333333332      23344788888888888888888888888888765431  


Q ss_pred             chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhHHHHHHhh--cC-HHHHHHHHHHHHHHH
Q 000742          416 LEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRF--DN-IEEARRLQHEIDKLK  491 (1313)
Q Consensus       416 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~~L~~~~~~~~--~~-~~~a~~~~e~~~~l~  491 (1313)
                        ..-..+......+.+.++     +.|-+.+-+.+...+.. ...+|..++.+++..-  ++ .++...+.+.-..+.
T Consensus       355 --e~r~~l~~A~~aLkkSkR-----kd~ykilGi~~~as~~e-ikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~  425 (486)
T KOG0550|consen  355 --EIRRTLREAQLALKKSKR-----KDWYKILGISRNASDDE-IKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYT  425 (486)
T ss_pred             --chHHHHHHHHHHHHHhhh-----hhHHHHhhhhhhcccch-hhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHH
Confidence              111222222222211111     11223444444433332 4458888888887532  22 444444544444443

>PRK12370 invasion protein regulator; Provisional

Probab=99.58  E-value=1.6e-13  Score=169.17  Aligned_cols=243  Identities=8%  Similarity=-0.064  Sum_probs=188.0

Q ss_pred             hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHH
Q 000742            5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNR---------GEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLG   75 (1313)
Q Consensus         5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~---------g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg   75 (1313)
                      .+.+++|+..|++|++.+|....+  +..+|.+|...         +++++|+..+++|+++.+      ....++..+|
T Consensus       274 ~~~~~~A~~~~~~Al~ldP~~a~a--~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP------~~~~a~~~lg  345 (553)
T PRK12370        274 PYSLQQALKLLTQCVNMSPNSIAP--YCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH------NNPQALGLLG  345 (553)
T ss_pred             HHHHHHHHHHHHHHHhcCCccHHH--HHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC------CCHHHHHHHH
Confidence            467889999999999999987666  77888877643         348999999999998863      3378899999


Q ss_pred             HHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCC
Q 000742           76 EVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPA  155 (1313)
Q Consensus        76 ~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~  155 (1313)
                      .++...|++++|+.+| ++++++.|+..      .+++.+|.+|...        |++++|+..+++++++         
T Consensus       346 ~~~~~~g~~~~A~~~~-~~Al~l~P~~~------~a~~~lg~~l~~~--------G~~~eAi~~~~~Al~l---------  401 (553)
T PRK12370        346 LINTIHSEYIVGSLLF-KQANLLSPISA------DIKYYYGWNLFMA--------GQLEEALQTINECLKL---------  401 (553)
T ss_pred             HHHHHccCHHHHHHHH-HHHHHhCCCCH------HHHHHHHHHHHHC--------CCHHHHHHHHHHHHhc---------
Confidence            9999999999999999 99999987653      4678999999987        9999999999999988         


Q ss_pred             CCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000742          156 TSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQD  235 (1313)
Q Consensus       156 ~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~ka  235 (1313)
                            .|..+.++..++.+++..|++++|+..++++++..        ++....++.++|.+|...|++++|...+++.
T Consensus       402 ------~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~--------~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~  467 (553)
T PRK12370        402 ------DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH--------LQDNPILLSMQVMFLSLKGKHELARKLTKEI  467 (553)
T ss_pred             ------CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc--------cccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence                  22333455556667778899999999999988762        2334557889999999999999999999886


Q ss_pred             HHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHH
Q 000742          236 IIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKK  301 (1313)
Q Consensus       236 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~  301 (1313)
                      ....+      ....+...++..|...|+  +|...+++.++..............++.-.|+-..
T Consensus       468 ~~~~~------~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~  525 (553)
T PRK12370        468 STQEI------TGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIA  525 (553)
T ss_pred             hhccc------hhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHH
Confidence            55533      566677888888888884  88888888777655444433334445544454433

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.58  E-value=1e-14  Score=164.57  Aligned_cols=266  Identities=18%  Similarity=0.199  Sum_probs=98.3

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 000742           33 VIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRAC  112 (1313)
Q Consensus        33 ~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~  112 (1313)
                      .+|.+++..|++++|++.+++.+....    ++.....+..+|.+...++++++|+..| ++.+...+....      .+
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~----~~~~~~~~~~~a~La~~~~~~~~A~~ay-~~l~~~~~~~~~------~~   81 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIA----PPDDPEYWRLLADLAWSLGDYDEAIEAY-EKLLASDKANPQ------DY   81 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccc----cccccccccccccccccccccccccccc-cccccccccccc------cc
Confidence            568888888999999888866554431    1222466777888888888899998888 888876554322      23


Q ss_pred             HHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000742          113 TQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRG  192 (1313)
Q Consensus       113 ~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~a  192 (1313)
                      ..++.+ ...        +++++|+.+++++.+...                ....+.....++...++++++...+.++
T Consensus        82 ~~l~~l-~~~--------~~~~~A~~~~~~~~~~~~----------------~~~~l~~~l~~~~~~~~~~~~~~~l~~~  136 (280)
T PF13429_consen   82 ERLIQL-LQD--------GDPEEALKLAEKAYERDG----------------DPRYLLSALQLYYRLGDYDEAEELLEKL  136 (280)
T ss_dssp             -------------------------------------------------------------H-HHHTT-HHHHHHHHHHH
T ss_pred             cccccc-ccc--------cccccccccccccccccc----------------ccchhhHHHHHHHHHhHHHHHHHHHHHH
Confidence            344444 222        777788777776654321                1234455666777778888888888776


Q ss_pred             HhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHH
Q 000742          193 LEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCY  272 (1313)
Q Consensus       193 l~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  272 (1313)
                      ...       ...+.....+..+|.+|...|++++|+..|+++++..|      ....+...++.++...|++++|.+.+
T Consensus       137 ~~~-------~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P------~~~~~~~~l~~~li~~~~~~~~~~~l  203 (280)
T PF13429_consen  137 EEL-------PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDP------DDPDARNALAWLLIDMGDYDEAREAL  203 (280)
T ss_dssp             HH--------T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-T------T-HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             Hhc-------cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHCCChHHHHHHH
Confidence            643       11234566777888888888888888888888888766      56667777777777788887777766


Q ss_pred             HHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHH
Q 000742          273 QKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSM  352 (1313)
Q Consensus       273 ~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~  352 (1313)
                      +...+..+...                                                                     
T Consensus       204 ~~~~~~~~~~~---------------------------------------------------------------------  214 (280)
T PF13429_consen  204 KRLLKAAPDDP---------------------------------------------------------------------  214 (280)
T ss_dssp             HHHHHH-HTSC---------------------------------------------------------------------
T ss_pred             HHHHHHCcCHH---------------------------------------------------------------------
Confidence            66555543322                                                                     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Q 000742          353 IFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDS  432 (1313)
Q Consensus       353 ~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~  432 (1313)
                                                  ..+..+|.+|..+|++++|+.+|+++++..      +....++..+|.++..
T Consensus       215 ----------------------------~~~~~la~~~~~lg~~~~Al~~~~~~~~~~------p~d~~~~~~~a~~l~~  260 (280)
T PF13429_consen  215 ----------------------------DLWDALAAAYLQLGRYEEALEYLEKALKLN------PDDPLWLLAYADALEQ  260 (280)
T ss_dssp             ----------------------------CHCHHHHHHHHHHT-HHHHHHHHHHHHHHS------TT-HHHHHHHHHHHT-
T ss_pred             ----------------------------HHHHHHHHHhcccccccccccccccccccc------cccccccccccccccc
Confidence                                        344457888999999999999999988654      3677788899999999


Q ss_pred             cCCHHHHHHHHHHHHHHH
Q 000742          433 NGDWAGALDAFQEGYRIA  450 (1313)
Q Consensus       433 ~g~~~~A~~~~~kAl~i~  450 (1313)
                      .|++++|..+++++++..
T Consensus       261 ~g~~~~A~~~~~~~~~~l  278 (280)
T PF13429_consen  261 AGRKDEALRLRRQALRLL  278 (280)
T ss_dssp             ------------------
T ss_pred             cccccccccccccccccc
Confidence            999999999999887653

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.58  E-value=2.2e-15  Score=184.66  Aligned_cols=260  Identities=23%  Similarity=0.132  Sum_probs=181.0

Q ss_pred             CCcCEEEecCCCCCHHHHHHHHHHHHhcccCccceEEEccCCCCCHHHHHHHHhcccCCCCcCEEEecCCCCChhHHHHH
Q 000742          858 KTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYL  937 (1313)
Q Consensus       858 ~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~~~~l~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l  937 (1313)
                      ..-..|+|++|.|+.- ...+         ...+..|+|++|+|+..+.        ..++|++|+|++|.|+.     +
T Consensus       201 ~~~~~LdLs~~~LtsL-P~~l---------~~~L~~L~L~~N~Lt~LP~--------lp~~Lk~LdLs~N~Lts-----L  257 (788)
T PRK15387        201 NGNAVLNVGESGLTTL-PDCL---------PAHITTLVIPDNNLTSLPA--------LPPELRTLEVSGNQLTS-----L  257 (788)
T ss_pred             CCCcEEEcCCCCCCcC-Ccch---------hcCCCEEEccCCcCCCCCC--------CCCCCcEEEecCCccCc-----c
Confidence            4577899999998741 1111         1257899999999986432        24799999999999985     3


Q ss_pred             HHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHHHhhccCCccceeecCCCCCChH
Q 000742          938 STILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKP 1017 (1313)
Q Consensus       938 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~ 1017 (1313)
                      +.   ..++|+.|+|++|.|+.     ++..   ..+|+.|+|++|.+..      ++.   .+++|+.|+|++|+++..
T Consensus       258 P~---lp~sL~~L~Ls~N~L~~-----Lp~l---p~~L~~L~Ls~N~Lt~------LP~---~p~~L~~LdLS~N~L~~L  317 (788)
T PRK15387        258 PV---LPPGLLELSIFSNPLTH-----LPAL---PSGLCKLWIFGNQLTS------LPV---LPPGLQELSVSDNQLASL  317 (788)
T ss_pred             cC---cccccceeeccCCchhh-----hhhc---hhhcCEEECcCCcccc------ccc---cccccceeECCCCccccC
Confidence            32   24589999999999873     3332   2579999999998421      222   246899999999998763


Q ss_pred             HHHHHHHHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHHHHHHHHHhcCCCccEEEccCCC
Q 000742         1018 VVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNP 1097 (1313)
Q Consensus      1018 ~~~~l~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~ 1097 (1313)
                      . . +     ..+|+.|++++|.|+..     +. +   ..+|+.|+|++|+|+..     +.   ...+|+.|++++|.
T Consensus       318 p-~-l-----p~~L~~L~Ls~N~L~~L-----P~-l---p~~Lq~LdLS~N~Ls~L-----P~---lp~~L~~L~Ls~N~  373 (788)
T PRK15387        318 P-A-L-----PSELCKLWAYNNQLTSL-----PT-L---PSGLQELSVSDNQLASL-----PT---LPSELYKLWAYNNR  373 (788)
T ss_pred             C-C-C-----cccccccccccCccccc-----cc-c---ccccceEecCCCccCCC-----CC---CCcccceehhhccc
Confidence            1 1 1     13589999999999752     11 1   14799999999999863     21   23578999999999


Q ss_pred             CChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEccCCCCChhhhhhhcccccccCCccccc
Q 000742         1098 IMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKELTLQQNLSSVNSENLQPALK 1177 (1313)
Q Consensus      1098 i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~~l~~l~~~~l~~n~~ 1177 (1313)
                      |+.. + .   ..    ++|+.|+|++|.|+.     ++..   .++|+.|+|++|.|+...  ..+..|+.+++++|.+
T Consensus       374 L~~L-P-~---l~----~~L~~LdLs~N~Lt~-----LP~l---~s~L~~LdLS~N~LssIP--~l~~~L~~L~Ls~NqL  434 (788)
T PRK15387        374 LTSL-P-A---LP----SGLKELIVSGNRLTS-----LPVL---PSELKELMVSGNRLTSLP--MLPSGLLSLSVYRNQL  434 (788)
T ss_pred             cccC-c-c---cc----cccceEEecCCcccC-----CCCc---ccCCCEEEccCCcCCCCC--cchhhhhhhhhccCcc
Confidence            8842 2 1   11    259999999999983     3321   357999999999998642  1224556666777766


Q ss_pred             ccccccccccccccccccccCCCCcccccccCCccchhh
Q 000742         1178 TSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVE 1216 (1313)
Q Consensus      1178 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 1216 (1313)
                      +.+|             ..+.++++|+.|+|++|+|++.
T Consensus       435 t~LP-------------~sl~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        435 TRLP-------------ESLIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             cccC-------------hHHhhccCCCeEECCCCCCCch
Confidence            6655             2345566666666666666554

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.57  E-value=4.8e-12  Score=162.76  Aligned_cols=386  Identities=12%  Similarity=0.032  Sum_probs=241.4

Q ss_pred             hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh
Q 000742            5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF   84 (1313)
Q Consensus         5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~   84 (1313)
                      .|++++|.++|+...+.+........+..+...+...|..++|..+|+....         ....+|..+-..|...|++
T Consensus       383 ~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---------pd~~Tyn~LL~a~~k~g~~  453 (1060)
T PLN03218        383 DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---------PTLSTFNMLMSVCASSQDI  453 (1060)
T ss_pred             CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---------CCHHHHHHHHHHHHhCcCH
Confidence            3678889998888877654332333344556667777888888877765421         1256677777777788888


Q ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHH
Q 000742           85 KDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKE  164 (1313)
Q Consensus        85 ~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~  164 (1313)
                      ++|...+ +++.+.... ++    ..+|..+...|...        |++++|.+.|++..+.    +-.          .
T Consensus       454 e~A~~lf-~~M~~~Gl~-pD----~~tynsLI~~y~k~--------G~vd~A~~vf~eM~~~----Gv~----------P  505 (1060)
T PLN03218        454 DGALRVL-RLVQEAGLK-AD----CKLYTTLISTCAKS--------GKVDAMFEVFHEMVNA----GVE----------A  505 (1060)
T ss_pred             HHHHHHH-HHHHHcCCC-CC----HHHHHHHHHHHHhC--------cCHHHHHHHHHHHHHc----CCC----------C
Confidence            8888877 766553221 12    23566677777765        7778777777776542    100          0


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhch
Q 000742          165 YIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEH  244 (1313)
Q Consensus       165 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~  244 (1313)
                      ...+|..+...|.+.|++++|+..|.+..+.       +..+ ...+|..+...|.+.|++++|.+.|++......  + 
T Consensus       506 dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~-------Gv~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~--g-  574 (1060)
T PLN03218        506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSK-------NVKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAETH--P-  574 (1060)
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-------CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC--C-
Confidence            1457777777888888888888887776543       1122 245677777788888888888887777654311  0 


Q ss_pred             hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-ccChhHHHHHHHHhHHHHHHHHHHHHHHHHHH--H---HHHH
Q 000742          245 CQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQS-MEDEDALASQIDQNIETVKKAIEVMDELKKEE--Q---NLKK  318 (1313)
Q Consensus       245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~-~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~--~---~~~~  318 (1313)
                      ......+|..+...|.+.|++++|.+.|+++.+..-. ....+..+...|...|++.+|...|++....-  +   .+..
T Consensus       575 i~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Tyns  654 (1060)
T PLN03218        575 IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA  654 (1060)
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence            1123456777777788888888888888776654311 11223334445666677777777776665320  0   0111


Q ss_pred             HHHHHHHhhCCchHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHH
Q 000742          319 LTRNMIIAKGTSQERKYLLQQN---------ASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGES  389 (1313)
Q Consensus       319 l~~~l~~~~~~~~~a~~~~~~~---------~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~  389 (1313)
                      + -......+..+++..+++..         ..+..+...|...+++++|.+.+++....    +. .....+|..+...
T Consensus       655 L-I~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~----g~-~PdvvtyN~LI~g  728 (1060)
T PLN03218        655 L-VDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI----KL-RPTVSTMNALITA  728 (1060)
T ss_pred             H-HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHH
Confidence            1 11112234444454444442         35667777778888888888887766432    11 2234678888888


Q ss_pred             HHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000742          390 YQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRI  449 (1313)
Q Consensus       390 y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i  449 (1313)
                      |.+.|++++|++.|+++.+.     +......+|..+-.+|.+.|++++|...|.+..+.
T Consensus       729 y~k~G~~eeAlelf~eM~~~-----Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~  783 (1060)
T PLN03218        729 LCEGNQLPKALEVLSEMKRL-----GLCPNTITYSILLVASERKDDADVGLDLLSQAKED  783 (1060)
T ss_pred             HHHCCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            88888888888888876532     12234456666777888888888888888887653

>TIGR00540 hemY_coli hemY protein

Probab=99.57  E-value=7e-13  Score=157.52  Aligned_cols=318  Identities=12%  Similarity=0.000  Sum_probs=221.4

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHH
Q 000742           27 EARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLV  106 (1313)
Q Consensus        27 ~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~  106 (1313)
                      .+......|...+..|+++.|.+.+.++.+..    +.  ....+...|.++..+|++++|.+++ +++.+..+...-. 
T Consensus        83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~----~~--~~~~~llaA~aa~~~g~~~~A~~~l-~~a~~~~p~~~l~-  154 (409)
T TIGR00540        83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHA----AE--PVLNLIKAAEAAQQRGDEARANQHL-EEAAELAGNDNIL-  154 (409)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcC----CC--CHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHhCCcCchH-
Confidence            34445678888999999999999998876654    22  2556678899999999999999999 9998766554311 


Q ss_pred             HHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHH
Q 000742          107 EQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAK  186 (1313)
Q Consensus       107 ~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~  186 (1313)
                          +....+.++...        |++++|...+++..+.               .|..+.++..++.+|...|++++|+
T Consensus       155 ----~~~~~a~l~l~~--------~~~~~Al~~l~~l~~~---------------~P~~~~~l~ll~~~~~~~~d~~~a~  207 (409)
T TIGR00540       155 ----VEIARTRILLAQ--------NELHAARHGVDKLLEM---------------APRHKEVLKLAEEAYIRSGAWQALD  207 (409)
T ss_pred             ----HHHHHHHHHHHC--------CCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHHhhHHHHH
Confidence                123347777766        9999999999988877               3455789999999999999999999


Q ss_pred             HHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHH
Q 000742          187 KFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYD  266 (1313)
Q Consensus       187 ~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  266 (1313)
                      +.+.+..+....     +......+......-+...+..+++.+.+.++....+.  ..+.....+..+|..+...|+++
T Consensus       208 ~~l~~l~k~~~~-----~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~--~~~~~~~l~~~~a~~l~~~g~~~  280 (409)
T TIGR00540       208 DIIDNMAKAGLF-----DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPR--HRRHNIALKIALAEHLIDCDDHD  280 (409)
T ss_pred             HHHHHHHHcCCC-----CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCH--HHhCCHHHHHHHHHHHHHCCChH
Confidence            999998876211     12222222222233334445555566677666665432  12246788999999999999999


Q ss_pred             HHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHH
Q 000742          267 EAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRL  346 (1313)
Q Consensus       267 ~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L  346 (1313)
                      +|.+.++++++..|+........                +...             ....                    
T Consensus       281 ~A~~~l~~~l~~~pd~~~~~~~~----------------l~~~-------------~~l~--------------------  311 (409)
T TIGR00540       281 SAQEIIFDGLKKLGDDRAISLPL----------------CLPI-------------PRLK--------------------  311 (409)
T ss_pred             HHHHHHHHHHhhCCCcccchhHH----------------HHHh-------------hhcC--------------------
Confidence            99999999999887654321000                0000             0000                    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhH--HHHHHHHHHHHHhhCHHHHHHHHHH--HHHHHHHhCCchhHHHH
Q 000742          347 IEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLS--DSFLVIGESYQKLRKFNKAIKWYTK--SWEMYKSIGNLEGQALA  422 (1313)
Q Consensus       347 ~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a--~~~~~lg~~y~~~g~~~~A~~~~~k--al~l~~~~~~~~~~~~~  422 (1313)
                            .++..++.+.+++++      ...|..+  .++..+|++++++|++++|.++|++  +++..+       ....
T Consensus       312 ------~~~~~~~~~~~e~~l------k~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-------~~~~  372 (409)
T TIGR00540       312 ------PEDNEKLEKLIEKQA------KNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-------DAND  372 (409)
T ss_pred             ------CCChHHHHHHHHHHH------HhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-------CHHH
Confidence                  011122233333332      2345566  8889999999999999999999995  544322       2233


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 000742          423 KVNMGNVLDSNGDWAGALDAFQEGYRIAVEAN  454 (1313)
Q Consensus       423 ~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~  454 (1313)
                      +..+|.++.+.|+.++|.++|++++...-..+
T Consensus       373 ~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~~  404 (409)
T TIGR00540       373 LAMAADAFDQAGDKAEAAAMRQDSLGLMLAIQ  404 (409)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc
Confidence            66999999999999999999999988764443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.56  E-value=4.4e-12  Score=147.08  Aligned_cols=435  Identities=11%  Similarity=0.006  Sum_probs=283.2

Q ss_pred             hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh
Q 000742            5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF   84 (1313)
Q Consensus         5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~   84 (1313)
                      -|+|+.+.+.|++++..-....+.  |+.++..|...|.-..|+...+......+   .+.+....+..-..|+.+.+.+
T Consensus       336 ~g~f~~lae~fE~~~~~~~~~~e~--w~~~als~saag~~s~Av~ll~~~~~~~~---~ps~~s~~Lmasklc~e~l~~~  410 (799)
T KOG4162|consen  336 CGQFEVLAEQFEQALPFSFGEHER--WYQLALSYSAAGSDSKAVNLLRESLKKSE---QPSDISVLLMASKLCIERLKLV  410 (799)
T ss_pred             HHHHHHHHHHHHHHhHhhhhhHHH--HHHHHHHHHHhccchHHHHHHHhhccccc---CCCcchHHHHHHHHHHhchhhh
Confidence            478889999999988776665555  88999999999999999998888776653   1222344455556677788999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcch---hhHHHHHHHHHHHHHHHHHhccCCCCCcchh
Q 000742           85 KDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDH---YSIRNAKKYFKSAMKLAQTLKENPATSRSSF  161 (1313)
Q Consensus        85 ~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~---~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~  161 (1313)
                      ++++.|. .+++...... ......+++..+|.+|..+...+..+.   ....++++.+++|++.               
T Consensus       411 eegldYA-~kai~~~~~~-~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~---------------  473 (799)
T KOG4162|consen  411 EEGLDYA-QKAISLLGGQ-RSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF---------------  473 (799)
T ss_pred             hhHHHHH-HHHHHHhhhh-hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc---------------
Confidence            9999999 9999976332 233456788999999987643221111   2234555555555554               


Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000742          162 LKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKK  241 (1313)
Q Consensus       162 ~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~  241 (1313)
                      .|..+.+.++++.-|..+++.+.|+++..+++++-..        ..+.+|..+|.++...+++.+|+...+.+++-.+ 
T Consensus       474 d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~--------~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~-  544 (799)
T KOG4162|consen  474 DPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRG--------DSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG-  544 (799)
T ss_pred             CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC--------ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh-
Confidence            2234578999999999999999999999999998332        3577999999999999999999999999998876 


Q ss_pred             hchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHH---------HHHhHHHHHHHHHHHHHHHHH
Q 000742          242 IEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQ---------IDQNIETVKKAIEVMDELKKE  312 (1313)
Q Consensus       242 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~---------~~~~lg~~~~a~~~~~~a~~~  312 (1313)
                           .+.........+-...++.++|+......+.+.+...........         .....++...+.+.+..+...
T Consensus       545 -----~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l  619 (799)
T KOG4162|consen  545 -----DNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL  619 (799)
T ss_pred             -----hhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence                 333333344444556789999999999999888754432211110         111111222222222222111


Q ss_pred             HHH-HHHHHHH--HHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHH
Q 000742          313 EQN-LKKLTRN--MIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGES  389 (1313)
Q Consensus       313 ~~~-~~~l~~~--l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~  389 (1313)
                      .+. .......  +......+.........-..+-..+..+...+.-+.|.....++..+.      +..+..|+..|..
T Consensus       620 ~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~------~l~~~~~~~~G~~  693 (799)
T KOG4162|consen  620 VASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID------PLSASVYYLRGLL  693 (799)
T ss_pred             HHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc------hhhHHHHHHhhHH
Confidence            110 0000000  000000000000011111112223334444444555555555555444      5566889999999


Q ss_pred             HHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHHHHcCChhHHHHHHHhhH
Q 000742          390 YQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALD--AFQEGYRIAVEANLPSVQLSALENMH  467 (1313)
Q Consensus       390 y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~--~~~kAl~i~~~~~~~~~~~~al~~L~  467 (1313)
                      +...|+..+|.+.|..|+.+.|      +...+...+|.++.+.|+..-|..  .+..|+++..      ....+++.+|
T Consensus       694 ~~~~~~~~EA~~af~~Al~ldP------~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp------~n~eaW~~LG  761 (799)
T KOG4162|consen  694 LEVKGQLEEAKEAFLVALALDP------DHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP------LNHEAWYYLG  761 (799)
T ss_pred             HHHHHhhHHHHHHHHHHHhcCC------CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC------CCHHHHHHHH
Confidence            9999999999999999998765      556678889999999998887777  8888888742      2456899999


Q ss_pred             HHHHHhhcCHHHHHHHHHHHHHHHhhh
Q 000742          468 YSHMIRFDNIEEARRLQHEIDKLKESK  494 (1313)
Q Consensus       468 ~~~~~~~~~~~~a~~~~e~~~~l~~s~  494 (1313)
                      .+....|+. ++|..-+.+...|+++-
T Consensus       762 ~v~k~~Gd~-~~Aaecf~aa~qLe~S~  787 (799)
T KOG4162|consen  762 EVFKKLGDS-KQAAECFQAALQLEESN  787 (799)
T ss_pred             HHHHHccch-HHHHHHHHHHHhhccCC
Confidence            988665544 45555556666666554

>PRK12370 invasion protein regulator; Provisional

Probab=99.55  E-value=6.5e-13  Score=163.79  Aligned_cols=207  Identities=16%  Similarity=-0.017  Sum_probs=164.2

Q ss_pred             cHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHcc---------ChHHHHHHH
Q 000742           24 RQEEARWANVIGDILKNR---GEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLE---------HFKDALIYQ   91 (1313)
Q Consensus        24 ~~~~a~~~~~lg~~y~~~---g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g---------~~~~A~~~~   91 (1313)
                      ....+..++..|..+...   +.+++|+..|++|+++.+.      .+.++..+|.+|...+         ++++|+..+
T Consensus       254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~------~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~  327 (553)
T PRK12370        254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN------SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHA  327 (553)
T ss_pred             CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHH
Confidence            344555566777655433   4578999999999988743      3778888898876543         488999999


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHH
Q 000742           92 VKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNN  171 (1313)
Q Consensus        92 ~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~  171 (1313)
                       ++++++.|+..      .++..+|.++...        |++++|+.+|++|+++               .|..+.+++.
T Consensus       328 -~~Al~ldP~~~------~a~~~lg~~~~~~--------g~~~~A~~~~~~Al~l---------------~P~~~~a~~~  377 (553)
T PRK12370        328 -IKATELDHNNP------QALGLLGLINTIH--------SEYIVGSLLFKQANLL---------------SPISADIKYY  377 (553)
T ss_pred             -HHHHhcCCCCH------HHHHHHHHHHHHc--------cCHHHHHHHHHHHHHh---------------CCCCHHHHHH
Confidence             99999977653      5678899999877        9999999999999988               4466789999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHH
Q 000742          172 IGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKG  251 (1313)
Q Consensus       172 la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~  251 (1313)
                      +|.++...|++++|+..+++++++.+.         ...++..++.+++..|++++|+..+++++...+     +..+.+
T Consensus       378 lg~~l~~~G~~~eAi~~~~~Al~l~P~---------~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~-----p~~~~~  443 (553)
T PRK12370        378 YGWNLFMAGQLEEALQTINECLKLDPT---------RAAAGITKLWITYYHTGIDDAIRLGDELRSQHL-----QDNPIL  443 (553)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCC---------ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhcc-----ccCHHH
Confidence            999999999999999999999998443         233445566677789999999999999887642     356778


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 000742          252 YINLGELHYRVQKYDEAILCYQKALNLAQ  280 (1313)
Q Consensus       252 ~~~la~~~~~~g~~~~A~~~~~kal~~~~  280 (1313)
                      +..+|.+|...|++++|...+++.....+
T Consensus       444 ~~~la~~l~~~G~~~eA~~~~~~~~~~~~  472 (553)
T PRK12370        444 LSMQVMFLSLKGKHELARKLTKEISTQEI  472 (553)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHhhhccc
Confidence            89999999999999999999987655433

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.55  E-value=3.7e-16  Score=166.88  Aligned_cols=365  Identities=18%  Similarity=0.129  Sum_probs=229.6

Q ss_pred             CCcCEEEecCCCCCHHHHHHHHHHHHhcccCccceEEEccCCCCCHHHHHHHHhcccCCCCcCEEEecC-CCCChhHHHH
Q 000742          858 KTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSG-NRLTDACGSY  936 (1313)
Q Consensus       858 ~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~~~~l~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~l~~~~~~~  936 (1313)
                      +...+|+|..|.|+...-..+..       ..+|+.||||+|.|+.+.+.+|..+    .+|.+|-|-+ |+|++.    
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~-------l~~LRrLdLS~N~Is~I~p~AF~GL----~~l~~Lvlyg~NkI~~l----  131 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKT-------LHRLRRLDLSKNNISFIAPDAFKGL----ASLLSLVLYGNNKITDL----  131 (498)
T ss_pred             CcceEEEeccCCcccCChhhccc-------hhhhceecccccchhhcChHhhhhh----HhhhHHHhhcCCchhhh----
Confidence            46788999999987655444443       3457999999999999999988886    6666665555 899986    


Q ss_pred             HHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHHH-hhccCCccceeecCCCCC-
Q 000742          937 LSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLV-KLDTLKSFSELNLNGLKL- 1014 (1313)
Q Consensus       937 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~-~l~~~~~L~~L~Ls~n~l- 1014 (1313)
                      -...|..+.+|+.|.+.-|++.-    ...++|..+++|..|.+-+|.+      ..+.. .+..+..++.+.+..|.+ 
T Consensus       132 ~k~~F~gL~slqrLllNan~i~C----ir~~al~dL~~l~lLslyDn~~------q~i~~~tf~~l~~i~tlhlA~np~i  201 (498)
T KOG4237|consen  132 PKGAFGGLSSLQRLLLNANHINC----IRQDALRDLPSLSLLSLYDNKI------QSICKGTFQGLAAIKTLHLAQNPFI  201 (498)
T ss_pred             hhhHhhhHHHHHHHhcChhhhcc----hhHHHHHHhhhcchhcccchhh------hhhccccccchhccchHhhhcCccc
Confidence            45677888889999999998886    5667788899999999998873      33444 566777888888877762 


Q ss_pred             ChHHHHHHHHHh--------hcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHHHHHHHHHhcCC
Q 000742         1015 SKPVVDRLCQLA--------KTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVH 1086 (1313)
Q Consensus      1015 ~~~~~~~l~~l~--------~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~ 1086 (1313)
                      .+-...+++...        .........|..+++.......+-..+.    .+..=-.+.|.+...+   -..+|..++
T Consensus       202 cdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~e----sl~s~~~~~d~~d~~c---P~~cf~~L~  274 (498)
T KOG4237|consen  202 CDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLE----SLPSRLSSEDFPDSIC---PAKCFKKLP  274 (498)
T ss_pred             cccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHH----hHHHhhccccCcCCcC---hHHHHhhcc
Confidence            222222222211        1112233333444444433333322211    1111122333333322   234588899


Q ss_pred             CccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEccCCCCChh--hhhhhc
Q 000742         1087 GILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKEL--TLQQNL 1164 (1313)
Q Consensus      1087 ~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~--~~~~~l 1164 (1313)
                      +|+.|+|++|.|+.....++..+-     .+++|.|..|+|...    -..+|.++..|+.|+|.+|+|+-.  +....+
T Consensus       275 ~L~~lnlsnN~i~~i~~~aFe~~a-----~l~eL~L~~N~l~~v----~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~  345 (498)
T KOG4237|consen  275 NLRKLNLSNNKITRIEDGAFEGAA-----ELQELYLTRNKLEFV----SSGMFQGLSGLKTLSLYDNQITTVAPGAFQTL  345 (498)
T ss_pred             cceEeccCCCccchhhhhhhcchh-----hhhhhhcCcchHHHH----HHHhhhccccceeeeecCCeeEEEeccccccc
Confidence            999999999999876666665543     389999999998744    235678888999999999998877  223233


Q ss_pred             ccccccCCcccccccccccccccccc-cccccccCCCC---ccccc----------------------------------
Q 000742         1165 SSVNSENLQPALKTSDCVSKEVDTDQ-HGLFAMNTDCN---DLEVA---------------------------------- 1206 (1313)
Q Consensus      1165 ~~l~~~~l~~n~~~~~~~~~~~~~~~-~~~~~~~~~l~---~L~~L---------------------------------- 1206 (1313)
                      ..|+.++|-.|...+.|.+.|+.+=- ..-......|.   .++.+                                  
T Consensus       346 ~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~  425 (498)
T KOG4237|consen  346 FSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLD  425 (498)
T ss_pred             ceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhh
Confidence            66778888888888877777664300 00000111111   12223                                  


Q ss_pred             ---ccCCccchhhhccccCCCCcccccccCCccchhhHHHHHHHHhccccCceecCCCCCCCHHHHHHHH
Q 000742         1207 ---DSEDDKIRVESAASGFDNSCTSSCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFSTQAVKTLY 1273 (1313)
Q Consensus      1207 ---~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~l~~~l~~~~~L~~LdLs~N~l~~~~~~~l~ 1273 (1313)
                         ..|+..++.+++. .     ......|.|.+|.++. +|..  .+..| .+|+|+|+|+.-.-..+.
T Consensus       426 tVvRcSnk~lk~lp~~-i-----P~d~telyl~gn~~~~-vp~~--~~~~l-~~dls~n~i~~Lsn~tf~  485 (498)
T KOG4237|consen  426 TVVRCSNKLLKLLPRG-I-----PVDVTELYLDGNAITS-VPDE--LLRSL-LLDLSNNRISSLSNYTFS  485 (498)
T ss_pred             hhHhhcccchhhcCCC-C-----CchhHHHhcccchhcc-cCHH--HHhhh-hcccccCceehhhccccc
Confidence               3333333333221 1     1245678888998875 4443  45677 899999999875544443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.54  E-value=3.2e-11  Score=137.31  Aligned_cols=447  Identities=14%  Similarity=0.112  Sum_probs=286.6

Q ss_pred             chhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742            4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH   83 (1313)
Q Consensus         4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~   83 (1313)
                      +.++|.+..+..+.+++..+...+.  +...|..+...|+-++|..+.+.++....+.      ..+|..+|.++....+
T Consensus        19 E~kQYkkgLK~~~~iL~k~~eHges--lAmkGL~L~~lg~~~ea~~~vr~glr~d~~S------~vCwHv~gl~~R~dK~   90 (700)
T KOG1156|consen   19 ETKQYKKGLKLIKQILKKFPEHGES--LAMKGLTLNCLGKKEEAYELVRLGLRNDLKS------HVCWHVLGLLQRSDKK   90 (700)
T ss_pred             HHHHHHhHHHHHHHHHHhCCccchh--HHhccchhhcccchHHHHHHHHHHhccCccc------chhHHHHHHHHhhhhh
Confidence            3577888888888888877777666  6789999999999999999999998865332      5788899999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhH
Q 000742           84 FKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLK  163 (1313)
Q Consensus        84 ~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p  163 (1313)
                      |++|+++| +.|+.+.+++.      ..+..++....++        ++++-....-.+.+++               .|
T Consensus        91 Y~eaiKcy-~nAl~~~~dN~------qilrDlslLQ~Qm--------Rd~~~~~~tr~~LLql---------------~~  140 (700)
T KOG1156|consen   91 YDEAIKCY-RNALKIEKDNL------QILRDLSLLQIQM--------RDYEGYLETRNQLLQL---------------RP  140 (700)
T ss_pred             HHHHHHHH-HHHHhcCCCcH------HHHHHHHHHHHHH--------HhhhhHHHHHHHHHHh---------------hh
Confidence            99999999 99999987764      4678888888888        8888777777777766               44


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000742          164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIE  243 (1313)
Q Consensus       164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~  243 (1313)
                      ..-..|...|..+...|++..|....+......... ..........+......+....|.+++|.+.+.+--.-.    
T Consensus       141 ~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~-~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i----  215 (700)
T KOG1156|consen  141 SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS-PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI----  215 (700)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH----
Confidence            566789999999999999999999988887765321 112233455667777888888999888887775543322    


Q ss_pred             hhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHH-
Q 000742          244 HCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAI-EVMDELKKEEQNLKKLTR-  321 (1313)
Q Consensus       244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~-~~~~~a~~~~~~~~~l~~-  321 (1313)
                        .+........|.++.+++++++|...|...+...|+..+.+.....++....+.-+++ ..|......++......+ 
T Consensus       216 --~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rl  293 (700)
T KOG1156|consen  216 --VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRL  293 (700)
T ss_pred             --HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhc
Confidence              2445566678999999999999999999999988876554433322221111111111 112111111111100000 


Q ss_pred             HHHHhhC--CchHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhC--------------Cchh
Q 000742          322 NMIIAKG--TSQERKYLLQQN------ASLDRLIEKSSMIFAWLKHCEYAKRKKRIA-SELC--------------DKGK  378 (1313)
Q Consensus       322 ~l~~~~~--~~~~a~~~~~~~------~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~-~~~~--------------~~~~  378 (1313)
                      .+....+  -......++...      ....++...|.   +..+. .+.++...-. ..+.              .+..
T Consensus       294 plsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk---~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Ptt  369 (700)
T KOG1156|consen  294 PLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYK---DPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTT  369 (700)
T ss_pred             cHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHh---chhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchH
Confidence            0000001  000000011110      00111111111   11111 1333322221 1111              1123


Q ss_pred             hHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhH
Q 000742          379 LSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSV  458 (1313)
Q Consensus       379 ~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~  458 (1313)
                      ....++.++.-|...|+++.|..|...|+.      ..|...+.|...|.++...|++++|...+++|.++..       
T Consensus       370 llWt~y~laqh~D~~g~~~~A~~yId~AId------HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-------  436 (700)
T KOG1156|consen  370 LLWTLYFLAQHYDKLGDYEVALEYIDLAID------HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-------  436 (700)
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHhc------cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-------
Confidence            356778899999999999999999999984      4556778899999999999999999999999988731       


Q ss_pred             HHHHHHhhHHHHHHhhcCHHHHHHHHHHHHHHHhhhccchhhhcccCccccCCCCCCCC
Q 000742          459 QLSALENMHYSHMIRFDNIEEARRLQHEIDKLKESKSEDLEAYDVARDCCSETDTEGND  517 (1313)
Q Consensus       459 ~~~al~~L~~~~~~~~~~~~~a~~~~e~~~~l~~s~~~~~~~~~~~~d~~~~~~~~~~~  517 (1313)
                      ...+.+.-...|+.+.+..++|.+.......     +..--..+..+..|.|-.++.|+
T Consensus       437 aDR~INsKcAKYmLrAn~i~eA~~~~skFTr-----~~~~~~~~L~~mqcmWf~~E~g~  490 (700)
T KOG1156|consen  437 ADRAINSKCAKYMLRANEIEEAEEVLSKFTR-----EGFGAVNNLAEMQCMWFQLEDGE  490 (700)
T ss_pred             hhHHHHHHHHHHHHHccccHHHHHHHHHhhh-----cccchhhhHHHhhhHHHhHhhhH
Confidence            1224443444566555555555544332211     11223344566668888887765

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.54  E-value=3.6e-13  Score=147.82  Aligned_cols=205  Identities=14%  Similarity=0.122  Sum_probs=170.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcC
Q 000742           25 QEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASD  104 (1313)
Q Consensus        25 ~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~  104 (1313)
                      ...+..++.+|..|...|++++|+..++++++..+      ....++..+|.+|...|++++|++++ +++++..+... 
T Consensus        28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~-~~al~~~~~~~-   99 (234)
T TIGR02521        28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDP------DDYLAYLALALYYQQLGELEKAEDSF-RRALTLNPNNG-   99 (234)
T ss_pred             CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHcCCHHHHHHHH-HHHHhhCCCCH-
Confidence            34566789999999999999999999999987653      23678899999999999999999999 99998866543 


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHH
Q 000742          105 LVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEE  184 (1313)
Q Consensus       105 ~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~  184 (1313)
                           .++..+|.+|...        |++++|+.+|++++....             .+.....+..+|.++...|++++
T Consensus       100 -----~~~~~~~~~~~~~--------g~~~~A~~~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~g~~~~  153 (234)
T TIGR02521       100 -----DVLNNYGTFLCQQ--------GKYEQAMQQFEQAIEDPL-------------YPQPARSLENAGLCALKAGDFDK  153 (234)
T ss_pred             -----HHHHHHHHHHHHc--------ccHHHHHHHHHHHHhccc-------------cccchHHHHHHHHHHHHcCCHHH
Confidence                 4678899999877        999999999999986411             11335678889999999999999


Q ss_pred             HHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcC
Q 000742          185 AKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQK  264 (1313)
Q Consensus       185 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~  264 (1313)
                      |..++.++++..+.         ...++..+|.++...|++++|..++++++...+      .....+..++.++...|+
T Consensus       154 A~~~~~~~~~~~~~---------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  218 (234)
T TIGR02521       154 AEKYLTRALQIDPQ---------RPESLLELAELYYLRGQYKDARAYLERYQQTYN------QTAESLWLGIRIARALGD  218 (234)
T ss_pred             HHHHHHHHHHhCcC---------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHhh
Confidence            99999999987432         355788999999999999999999999988732      456667788999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 000742          265 YDEAILCYQKALNL  278 (1313)
Q Consensus       265 ~~~A~~~~~kal~~  278 (1313)
                      +++|..+.+.+...
T Consensus       219 ~~~a~~~~~~~~~~  232 (234)
T TIGR02521       219 VAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999988876654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.54  E-value=4.6e-12  Score=149.12  Aligned_cols=348  Identities=11%  Similarity=-0.006  Sum_probs=235.8

Q ss_pred             cCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHH
Q 000742           22 GNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKD  101 (1313)
Q Consensus        22 ~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~  101 (1313)
                      +|+...+  +..+|.+|...|++++|.+.+.++.+..+..   ....+.....|..+...|++++|...+ +++++..|.
T Consensus         2 dp~~~~a--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~e~~~~~a~~~~~~g~~~~A~~~~-~~~l~~~P~   75 (355)
T cd05804           2 DPDFALG--HAAAALLLLLGGERPAAAAKAAAAAQALAAR---ATERERAHVEALSAWIAGDLPKALALL-EQLLDDYPR   75 (355)
T ss_pred             CCccHHH--HHHHHHHHHhcCCcchHHHHHHHHHHHhccC---CCHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHCCC
Confidence            4555555  8899999999999999999998888877533   223556777899999999999999999 999988765


Q ss_pred             hcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCC
Q 000742          102 ASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDN  181 (1313)
Q Consensus       102 ~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~  181 (1313)
                      ..      .++.. +..+...        +.+..+.....+++..   ....        .|....++..+|.++...|+
T Consensus        76 ~~------~a~~~-~~~~~~~--------~~~~~~~~~~~~~l~~---~~~~--------~~~~~~~~~~~a~~~~~~G~  129 (355)
T cd05804          76 DL------LALKL-HLGAFGL--------GDFSGMRDHVARVLPL---WAPE--------NPDYWYLLGMLAFGLEEAGQ  129 (355)
T ss_pred             cH------HHHHH-hHHHHHh--------cccccCchhHHHHHhc---cCcC--------CCCcHHHHHHHHHHHHHcCC
Confidence            43      22232 4444444        3333333444444433   1111        23557788899999999999


Q ss_pred             HHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH
Q 000742          182 LEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYR  261 (1313)
Q Consensus       182 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~  261 (1313)
                      +++|+..+++++++.+.         ...++..+|.+|...|++++|+.++++++...+.  +.......+..+|.++..
T Consensus       130 ~~~A~~~~~~al~~~p~---------~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~~~~~~~~la~~~~~  198 (355)
T cd05804         130 YDRAEEAARRALELNPD---------DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--SSMLRGHNWWHLALFYLE  198 (355)
T ss_pred             HHHHHHHHHHHHhhCCC---------CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--CcchhHHHHHHHHHHHHH
Confidence            99999999999998543         3668899999999999999999999999988653  122345678899999999


Q ss_pred             hcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHH
Q 000742          262 VQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNA  341 (1313)
Q Consensus       262 ~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~  341 (1313)
                      .|++++|+..|++++...+...........    .....    .                  ....+...          
T Consensus       199 ~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~----~~~l~----~------------------~~~~g~~~----------  242 (355)
T cd05804         199 RGDYEAALAIYDTHIAPSAESDPALDLLDA----ASLLW----R------------------LELAGHVD----------  242 (355)
T ss_pred             CCCHHHHHHHHHHHhccccCCChHHHHhhH----HHHHH----H------------------HHhcCCCC----------
Confidence            999999999999986543321111000000    00000    0                  00000000          


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH---hCCchh
Q 000742          342 SLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKS---IGNLEG  418 (1313)
Q Consensus       342 ~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~---~~~~~~  418 (1313)
                                ....|+.......      ..... +.....-...+.++...|+.++|...++........   .+....
T Consensus       243 ----------~~~~w~~~~~~~~------~~~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  305 (355)
T cd05804         243 ----------VGDRWEDLADYAA------WHFPD-HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPAR  305 (355)
T ss_pred             ----------hHHHHHHHHHHHH------hhcCc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHH
Confidence                      0011111111100      00000 111122235788888999999999999988877665   333344


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHh
Q 000742          419 QALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALEN  465 (1313)
Q Consensus       419 ~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~~  465 (1313)
                      ...+....|.++...|++++|+..+..|+.+....|....|..+...
T Consensus       306 ~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs~aq~~~~~~  352 (355)
T cd05804         306 DVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGSHAQRDVFEQ  352 (355)
T ss_pred             hhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence            56677889999999999999999999999999999988888776654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.54  E-value=5.3e-13  Score=139.57  Aligned_cols=312  Identities=13%  Similarity=0.063  Sum_probs=218.6

Q ss_pred             hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh
Q 000742            5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF   84 (1313)
Q Consensus         5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~   84 (1313)
                      .+++..|+..|..|++.+|....+  ++..|.+|...|+-..|+.-+.+++++-+.      ...+....|.++..+|.+
T Consensus        51 ~~Q~sDALt~yHaAve~dp~~Y~a--ifrRaT~yLAmGksk~al~Dl~rVlelKpD------F~~ARiQRg~vllK~Gel  122 (504)
T KOG0624|consen   51 RGQLSDALTHYHAAVEGDPNNYQA--IFRRATVYLAMGKSKAALQDLSRVLELKPD------FMAARIQRGVVLLKQGEL  122 (504)
T ss_pred             hhhHHHHHHHHHHHHcCCchhHHH--HHHHHHHHhhhcCCccchhhHHHHHhcCcc------HHHHHHHhchhhhhcccH
Confidence            488999999999999999999888  999999999999999999999999988743      378888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh----ccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcch
Q 000742           85 KDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMF----LRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSS  160 (1313)
Q Consensus        85 ~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~----~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~  160 (1313)
                      ++|...| ++.++..+..+...   .++..++.+-...-    .++....|+...|+++..+.+++              
T Consensus       123 e~A~~DF-~~vl~~~~s~~~~~---eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--------------  184 (504)
T KOG0624|consen  123 EQAEADF-DQVLQHEPSNGLVL---EAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--------------  184 (504)
T ss_pred             HHHHHHH-HHHHhcCCCcchhH---HHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--------------
Confidence            9999999 99998877544322   11222221111100    01111237888888888888877              


Q ss_pred             hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742          161 FLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK  240 (1313)
Q Consensus       161 ~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~  240 (1313)
                       .|..+..+...+.+|...|+...|+.-+..+-++...         ....++.++.+++..|+.+.++..+++++++.+
T Consensus       185 -~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D---------nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldp  254 (504)
T KOG0624|consen  185 -QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD---------NTEGHYKISQLLYTVGDAENSLKEIRECLKLDP  254 (504)
T ss_pred             -CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc---------chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCc
Confidence             4577889999999999999999999999999888433         567899999999999999999999999999987


Q ss_pred             HhchhhhHHHHH------HHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000742          241 KIEHCQGEAKGY------INLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQ  314 (1313)
Q Consensus       241 ~~~~~~~~~~~~------~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~  314 (1313)
                      ..........-+      ..-+.-....++|.++++..++.++..|.......                           
T Consensus       255 dHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~---------------------------  307 (504)
T KOG0624|consen  255 DHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRY---------------------------  307 (504)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceee---------------------------
Confidence            432111100000      00111222333344444444443333332111000                           


Q ss_pred             HHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhh
Q 000742          315 NLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLR  394 (1313)
Q Consensus       315 ~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g  394 (1313)
                                                .....+...+...+++.+|+.-..+.+      ...+..+.++...|.+|....
T Consensus       308 --------------------------~~~r~~c~C~~~d~~~~eAiqqC~evL------~~d~~dv~~l~dRAeA~l~dE  355 (504)
T KOG0624|consen  308 --------------------------NGFRVLCTCYREDEQFGEAIQQCKEVL------DIDPDDVQVLCDRAEAYLGDE  355 (504)
T ss_pred             --------------------------eeeheeeecccccCCHHHHHHHHHHHH------hcCchHHHHHHHHHHHHhhhH
Confidence                                      001222333444455555555444443      455777899999999999999


Q ss_pred             CHHHHHHHHHHHHHHHH
Q 000742          395 KFNKAIKWYTKSWEMYK  411 (1313)
Q Consensus       395 ~~~~A~~~~~kal~l~~  411 (1313)
                      .|+.|+..|++|.+..+
T Consensus       356 ~YD~AI~dye~A~e~n~  372 (504)
T KOG0624|consen  356 MYDDAIHDYEKALELNE  372 (504)
T ss_pred             HHHHHHHHHHHHHhcCc
Confidence            99999999999998765

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.54  E-value=4.7e-15  Score=183.37  Aligned_cols=194  Identities=20%  Similarity=0.185  Sum_probs=104.8

Q ss_pred             ccceeecCCCCCChHHHHHHHHHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHHHHHHHHH
Q 000742         1003 SFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASV 1082 (1313)
Q Consensus      1003 ~L~~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 1082 (1313)
                      +|+.|+|++|+++.. +..+.     ++|+.|+|++|.|+.     +...+.   .+|+.|+|++|.|+..     +..+
T Consensus       242 ~L~~L~Ls~N~L~~L-P~~l~-----s~L~~L~Ls~N~L~~-----LP~~l~---~sL~~L~Ls~N~Lt~L-----P~~l  302 (754)
T PRK15370        242 TIQEMELSINRITEL-PERLP-----SALQSLDLFHNKISC-----LPENLP---EELRYLSVYDNSIRTL-----PAHL  302 (754)
T ss_pred             cccEEECcCCccCcC-ChhHh-----CCCCEEECcCCccCc-----cccccC---CCCcEEECCCCccccC-----cccc
Confidence            455555555555421 22111     246666666666542     111111   3566666666666542     1111


Q ss_pred             hcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEccCCCCChhhhhh
Q 000742         1083 SLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKELTLQQ 1162 (1313)
Q Consensus      1083 ~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~ 1162 (1313)
                        .++|+.|+|++|.++.. +..+       ..+|+.|++++|.++.     ++..+.  ++|+.|+|++|.|+.....+
T Consensus       303 --p~sL~~L~Ls~N~Lt~L-P~~l-------~~sL~~L~Ls~N~Lt~-----LP~~l~--~sL~~L~Ls~N~L~~LP~~l  365 (754)
T PRK15370        303 --PSGITHLNVQSNSLTAL-PETL-------PPGLKTLEAGENALTS-----LPASLP--PELQVLDVSKNQITVLPETL  365 (754)
T ss_pred             --hhhHHHHHhcCCccccC-Cccc-------cccceeccccCCcccc-----CChhhc--CcccEEECCCCCCCcCChhh
Confidence              13566677777766532 1111       1147777777776652     333332  46777777777665321111


Q ss_pred             hcccccccCCcccccccccccccccccccccccccCCCCcccccccCCccchhhhccccCCCCcccccccCCccchhhH-
Q 000742         1163 NLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFDNSCTSSCQKNSSFECQFV- 1241 (1313)
Q Consensus      1163 ~l~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~- 1241 (1313)
                                                           .++|+.|+|++|.|+.+++. .     ..+|+.|++++|++. 
T Consensus       366 -------------------------------------p~~L~~LdLs~N~Lt~LP~~-l-----~~sL~~LdLs~N~L~~  402 (754)
T PRK15370        366 -------------------------------------PPTITTLDVSRNALTNLPEN-L-----PAALQIMQASRNNLVR  402 (754)
T ss_pred             -------------------------------------cCCcCEEECCCCcCCCCCHh-H-----HHHHHHHhhccCCccc
Confidence                                                 13556666666666544321 1     125666666666665 


Q ss_pred             --HHHHHHHhccccCceecCCCCCCCHHHHHHHHHH
Q 000742         1242 --QELSSAIGMAKPLQLLDLSNNGFSTQAVKTLYCA 1275 (1313)
Q Consensus      1242 --~~l~~~l~~~~~L~~LdLs~N~l~~~~~~~l~~~ 1275 (1313)
                        ..+|..++.++++..|+|.+|+|+...+..+-..
T Consensus       403 LP~sl~~~~~~~~~l~~L~L~~Npls~~tl~~L~~L  438 (754)
T PRK15370        403 LPESLPHFRGEGPQPTRIIVEYNPFSERTIQNMQRL  438 (754)
T ss_pred             CchhHHHHhhcCCCccEEEeeCCCccHHHHHHHHHh
Confidence              2355566667899999999999998777666443

>PLN03210 Resistant to P

Probab=99.53  E-value=6.2e-15  Score=196.25  Aligned_cols=34  Identities=24%  Similarity=0.232  Sum_probs=15.6

Q ss_pred             ccccCCccchhhHHHHHHHHhccccCceecCCCC
Q 000742         1229 SCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNN 1262 (1313)
Q Consensus      1229 ~L~~L~Ls~n~l~~~l~~~l~~~~~L~~LdLs~N 1262 (1313)
                      +|+.|+|++|+-...+|..+..+++|+.|++++|
T Consensus       870 ~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        870 NLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             CCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence            4555555544433334444444444444444443

syringae 6; Provisional

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.53  E-value=8.5e-12  Score=156.16  Aligned_cols=196  Identities=10%  Similarity=-0.050  Sum_probs=154.5

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHH
Q 000742           28 ARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVE  107 (1313)
Q Consensus        28 a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~  107 (1313)
                      +...+..+.+.++.|+++.|+..|+++++..+..      ..+...++.++...|++++|+.++ ++++  .+.....  
T Consensus        34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~------~~av~dll~l~~~~G~~~~A~~~~-eka~--~p~n~~~--  102 (822)
T PRK14574         34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQ------SGQVDDWLQIAGWAGRDQEVIDVY-ERYQ--SSMNISS--  102 (822)
T ss_pred             hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccc------hhhHHHHHHHHHHcCCcHHHHHHH-HHhc--cCCCCCH--
Confidence            3347889999999999999999999999887432      222227888888899999999999 9998  3333222  


Q ss_pred             HHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHH
Q 000742          108 QQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKK  187 (1313)
Q Consensus       108 ~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~  187 (1313)
                        ..+..+|.+|..+        |++++|++.|+++++.               .|..+.++..++..|...++.++|++
T Consensus       103 --~~llalA~ly~~~--------gdyd~Aiely~kaL~~---------------dP~n~~~l~gLa~~y~~~~q~~eAl~  157 (822)
T PRK14574        103 --RGLASAARAYRNE--------KRWDQALALWQSSLKK---------------DPTNPDLISGMIMTQADAGRGGVVLK  157 (822)
T ss_pred             --HHHHHHHHHHHHc--------CCHHHHHHHHHHHHhh---------------CCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence              3445568899877        9999999999999988               33446777888999999999999999


Q ss_pred             HHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHH
Q 000742          188 FLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDE  267 (1313)
Q Consensus       188 ~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  267 (1313)
                      .++++....+.          ...+..++.++...+++.+|++.++++++..|      ....++..+..+....|-...
T Consensus       158 ~l~~l~~~dp~----------~~~~l~layL~~~~~~~~~AL~~~ekll~~~P------~n~e~~~~~~~~l~~~~~~~~  221 (822)
T PRK14574        158 QATELAERDPT----------VQNYMTLSYLNRATDRNYDALQASSEAVRLAP------TSEEVLKNHLEILQRNRIVEP  221 (822)
T ss_pred             HHHHhcccCcc----------hHHHHHHHHHHHhcchHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCcHH
Confidence            99999887332          22234456666667788779999999999976      777888888889999999888


Q ss_pred             HHHHHHHH
Q 000742          268 AILCYQKA  275 (1313)
Q Consensus       268 A~~~~~ka  275 (1313)
                      |.+..++-
T Consensus       222 a~~l~~~~  229 (822)
T PRK14574        222 ALRLAKEN  229 (822)
T ss_pred             HHHHHHhC
Confidence            88776653

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.52  E-value=1.6e-12  Score=166.17  Aligned_cols=420  Identities=6%  Similarity=-0.085  Sum_probs=242.9

Q ss_pred             hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh
Q 000742            5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF   84 (1313)
Q Consensus         5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~   84 (1313)
                      .|++++|.+.|+......+.......|..+...+...++++.|.+.+..+.+.-    - .....++..+..+|.+.|++
T Consensus       100 ~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g----~-~~~~~~~n~Li~~y~k~g~~  174 (697)
T PLN03081        100 CGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG----F-EPDQYMMNRVLLMHVKCGML  174 (697)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC----C-CcchHHHHHHHHHHhcCCCH
Confidence            467888888888877654322334457777777778888888887777665432    1 12256677777788888888


Q ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCC-c-----
Q 000742           85 KDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATS-R-----  158 (1313)
Q Consensus        85 ~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~-~-----  158 (1313)
                      ++|.+.| ++..+     ++    ..+|..+...|...        |++++|+..|++..+..    ..+... .     
T Consensus       175 ~~A~~lf-~~m~~-----~~----~~t~n~li~~~~~~--------g~~~~A~~lf~~M~~~g----~~p~~~t~~~ll~  232 (697)
T PLN03081        175 IDARRLF-DEMPE-----RN----LASWGTIIGGLVDA--------GNYREAFALFREMWEDG----SDAEPRTFVVMLR  232 (697)
T ss_pred             HHHHHHH-hcCCC-----CC----eeeHHHHHHHHHHC--------cCHHHHHHHHHHHHHhC----CCCChhhHHHHHH
Confidence            8887777 65532     11    23567777777765        77788888777765321    000000 0     


Q ss_pred             --------------------chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHH
Q 000742          159 --------------------SSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNV  218 (1313)
Q Consensus       159 --------------------~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~  218 (1313)
                                          ..+. ....++..+...|.+.|++++|.+.|++...            ....+|..+...
T Consensus       233 a~~~~~~~~~~~~l~~~~~~~g~~-~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~------------~~~vt~n~li~~  299 (697)
T PLN03081        233 ASAGLGSARAGQQLHCCVLKTGVV-GDTFVSCALIDMYSKCGDIEDARCVFDGMPE------------KTTVAWNSMLAG  299 (697)
T ss_pred             HHhcCCcHHHHHHHHHHHHHhCCC-ccceeHHHHHHHHHHCCCHHHHHHHHHhCCC------------CChhHHHHHHHH
Confidence                                0000 1123556677778888888888877765421            134567778888


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-ccChhHHHHHHHHhHH
Q 000742          219 YMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQS-MEDEDALASQIDQNIE  297 (1313)
Q Consensus       219 y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~-~~~~~~~~~~~~~~lg  297 (1313)
                      |...|++++|++.|++..+..     ......+|..+..++.+.|++++|.+.+..+++..-. .......+...|...|
T Consensus       300 y~~~g~~~eA~~lf~~M~~~g-----~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G  374 (697)
T PLN03081        300 YALHGYSEEALCLYYEMRDSG-----VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWG  374 (697)
T ss_pred             HHhCCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCC
Confidence            888888888888887764421     1123456777777788888888888877777665311 1122233444566666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742          298 TVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQN---------ASLDRLIEKSSMIFAWLKHCEYAKRKKR  368 (1313)
Q Consensus       298 ~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~---------~~l~~L~~~~~~~~~~~~A~~~~~~a~~  368 (1313)
                      .+.+|...|++..+.........-......+..+++..++++.         .++..+...+...+..++|.++++...+
T Consensus       375 ~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~  454 (697)
T PLN03081        375 RMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE  454 (697)
T ss_pred             CHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            6777777666543210000000000111233444444444432         2344555555666666666666666543


Q ss_pred             HHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000742          369 IASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYR  448 (1313)
Q Consensus       369 i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~  448 (1313)
                      ..   + .......|..+...|.+.|++++|.+.++++       . ......+|..+..++...|+++.|...+++.++
T Consensus       455 ~~---g-~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-------~-~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~  522 (697)
T PLN03081        455 NH---R-IKPRAMHYACMIELLGREGLLDEAYAMIRRA-------P-FKPTVNMWAALLTACRIHKNLELGRLAAEKLYG  522 (697)
T ss_pred             hc---C-CCCCccchHhHHHHHHhcCCHHHHHHHHHHC-------C-CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence            21   1 1122356666777777777777777666542       1 112344577777777777777777777777654


Q ss_pred             HHHHcCChhHHHHHHHhhHHHHHHhhcCHHHHHHHHHHHH
Q 000742          449 IAVEANLPSVQLSALENMHYSHMIRFDNIEEARRLQHEID  488 (1313)
Q Consensus       449 i~~~~~~~~~~~~al~~L~~~~~~~~~~~~~a~~~~e~~~  488 (1313)
                      +..  +    ....|..|...|. ..+..++|.++.+.+.
T Consensus       523 ~~p--~----~~~~y~~L~~~y~-~~G~~~~A~~v~~~m~  555 (697)
T PLN03081        523 MGP--E----KLNNYVVLLNLYN-SSGRQAEAAKVVETLK  555 (697)
T ss_pred             CCC--C----CCcchHHHHHHHH-hCCCHHHHHHHHHHHH
Confidence            421  1    1235556665553 3455666666665554

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.52  E-value=9.5e-11  Score=155.96  Aligned_cols=422  Identities=13%  Similarity=-0.038  Sum_probs=279.3

Q ss_pred             cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhc
Q 000742           24 RQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDAS  103 (1313)
Q Consensus        24 ~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~  103 (1313)
                      .......+...+..+...|++.+|+.++..+-.       ...........|......|++..+..++ ... .......
T Consensus       337 ~~~~~~lh~raa~~~~~~g~~~~Al~~a~~a~d-------~~~~~~ll~~~a~~l~~~g~~~~l~~~l-~~l-p~~~~~~  407 (903)
T PRK04841        337 AQELPELHRAAAEAWLAQGFPSEAIHHALAAGD-------AQLLRDILLQHGWSLFNQGELSLLEECL-NAL-PWEVLLE  407 (903)
T ss_pred             chHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC-------HHHHHHHHHHhHHHHHhcCChHHHHHHH-HhC-CHHHHhc
Confidence            333456677888889999999999987765522       2223455666777888889888766666 443 1111111


Q ss_pred             CHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHH
Q 000742          104 DLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLE  183 (1313)
Q Consensus       104 ~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~  183 (1313)
                      +.    ......+.++...        +++++|...+.++.+..........      ......+...+|.++...|+++
T Consensus       408 ~~----~l~~~~a~~~~~~--------g~~~~a~~~l~~a~~~~~~~~~~~~------~~~~~~~~~~~a~~~~~~g~~~  469 (903)
T PRK04841        408 NP----RLVLLQAWLAQSQ--------HRYSEVNTLLARAEQELKDRNIELD------GTLQAEFNALRAQVAINDGDPE  469 (903)
T ss_pred             Cc----chHHHHHHHHHHC--------CCHHHHHHHHHHHHHhccccCcccc------hhHHHHHHHHHHHHHHhCCCHH
Confidence            11    1234455555555        8999999999988776443221100      0123456667899999999999


Q ss_pred             HHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhc
Q 000742          184 EAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQ  263 (1313)
Q Consensus       184 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g  263 (1313)
                      +|..+++++++..+.    .+......++..+|.++...|++++|..++++++......+.......++..+|.++...|
T Consensus       470 ~A~~~~~~al~~~~~----~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G  545 (903)
T PRK04841        470 EAERLAELALAELPL----TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG  545 (903)
T ss_pred             HHHHHHHHHHhcCCC----ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence            999999999986433    2333355677889999999999999999999999998877776667778899999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHccChh-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHH
Q 000742          264 KYDEAILCYQKALNLAQSMEDED-ALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNAS  342 (1313)
Q Consensus       264 ~~~~A~~~~~kal~~~~~~~~~~-~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~  342 (1313)
                      ++++|..++++++.+........ .....++..++.+....+.++++.........+....    +...       ....
T Consensus       546 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~----~~~~-------~~~~  614 (903)
T PRK04841        546 FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY----QPQQ-------QLQC  614 (903)
T ss_pred             CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc----CchH-------HHHH
Confidence            99999999999999987654321 1111123334444444444444443333332222110    1000       1223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhh-HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHH
Q 000742          343 LDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKL-SDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQAL  421 (1313)
Q Consensus       343 l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~-a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~  421 (1313)
                      +..++..+...++++.|...+.++..+.......... ..........+...|+.++|..++.......  .........
T Consensus       615 ~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~--~~~~~~~~~  692 (903)
T PRK04841        615 LAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE--FANNHFLQG  692 (903)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC--CccchhHHH
Confidence            5567778888999999999999998876554322111 1111112345566889999999877655311  111111223


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhHHHHHHhhcCHHHHHHHHHHHHHH
Q 000742          422 AKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEARRLQHEIDKL  490 (1313)
Q Consensus       422 ~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~~L~~~~~~~~~~~~~a~~~~e~~~~l  490 (1313)
                      .+..+|.++...|++++|...+++++...+..+.......++..++..+...++ .++|.........+
T Consensus       693 ~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~-~~~A~~~L~~Al~l  760 (903)
T PRK04841        693 QWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGR-KSEAQRVLLEALKL  760 (903)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHH
Confidence            356899999999999999999999999998888887788888888888765554 44554444443333

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.52  E-value=5.2e-13  Score=138.78  Aligned_cols=271  Identities=14%  Similarity=0.097  Sum_probs=187.3

Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHhhCCCCC-c---hhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 000742           36 DILKNRGEYVEALKWFRIDYDVSVKYLPEKH-L---LPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRA  111 (1313)
Q Consensus        36 ~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~-~---~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a  111 (1313)
                      .+|+..++...|-...+..+++......... .   +.-...+|.||+++|-+.+|.+.+ +.+++..+-.       ..
T Consensus       187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~Aekql-qssL~q~~~~-------dT  258 (478)
T KOG1129|consen  187 YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQL-QSSLTQFPHP-------DT  258 (478)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHH-HHHhhcCCch-------hH
Confidence            4566677777777666666555432211111 1   222236888888888888888888 8877765433       34


Q ss_pred             HHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000742          112 CTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIR  191 (1313)
Q Consensus       112 ~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~  191 (1313)
                      +..++.+|..+        .+...|+..|.+.++.               .|........+|.++..++++++|.++|+.
T Consensus       259 fllLskvY~ri--------dQP~~AL~~~~~gld~---------------fP~~VT~l~g~ARi~eam~~~~~a~~lYk~  315 (478)
T KOG1129|consen  259 FLLLSKVYQRI--------DQPERALLVIGEGLDS---------------FPFDVTYLLGQARIHEAMEQQEDALQLYKL  315 (478)
T ss_pred             HHHHHHHHHHh--------ccHHHHHHHHhhhhhc---------------CCchhhhhhhhHHHHHHHHhHHHHHHHHHH
Confidence            66777777777        7777777777776655               344566667777777777777777777777


Q ss_pred             HHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHH
Q 000742          192 GLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILC  271 (1313)
Q Consensus       192 al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  271 (1313)
                      +++.         ++....+.-.+|.-|+.-++++-|+.||++.+.+.-      ..+..+.++|.+.+..++++-++..
T Consensus       316 vlk~---------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~------~speLf~NigLCC~yaqQ~D~~L~s  380 (478)
T KOG1129|consen  316 VLKL---------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA------QSPELFCNIGLCCLYAQQIDLVLPS  380 (478)
T ss_pred             HHhc---------CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC------CChHHHhhHHHHHHhhcchhhhHHH
Confidence            7776         333455566667777777777777777777777754      5566777777777777777777777


Q ss_pred             HHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHH
Q 000742          272 YQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSS  351 (1313)
Q Consensus       272 ~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~  351 (1313)
                      |++|+......                                                                     
T Consensus       381 f~RAlstat~~---------------------------------------------------------------------  391 (478)
T KOG1129|consen  381 FQRALSTATQP---------------------------------------------------------------------  391 (478)
T ss_pred             HHHHHhhccCc---------------------------------------------------------------------
Confidence            77777655322                                                                     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Q 000742          352 MIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLD  431 (1313)
Q Consensus       352 ~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~  431 (1313)
                                               ...+++|+++|.+....|++.-|...|+-++.-      ....+.++.++|..-.
T Consensus       392 -------------------------~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~------d~~h~ealnNLavL~~  440 (478)
T KOG1129|consen  392 -------------------------GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS------DAQHGEALNNLAVLAA  440 (478)
T ss_pred             -------------------------chhhhhhhccceeEEeccchHHHHHHHHHHhcc------CcchHHHHHhHHHHHh
Confidence                                     122377888888888888888888888887743      3466778888888888


Q ss_pred             HcCCHHHHHHHHHHHHHHHHH
Q 000742          432 SNGDWAGALDAFQEGYRIAVE  452 (1313)
Q Consensus       432 ~~g~~~~A~~~~~kAl~i~~~  452 (1313)
                      +.|+.++|..++..|-.....
T Consensus       441 r~G~i~~Arsll~~A~s~~P~  461 (478)
T KOG1129|consen  441 RSGDILGARSLLNAAKSVMPD  461 (478)
T ss_pred             hcCchHHHHHHHHHhhhhCcc
Confidence            888888888888877765433

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.52  E-value=2.9e-13  Score=135.67  Aligned_cols=171  Identities=20%  Similarity=0.183  Sum_probs=154.0

Q ss_pred             chhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHH
Q 000742           67 LLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKL  146 (1313)
Q Consensus        67 ~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l  146 (1313)
                      ...+...+|.-|...|++..|.+.+ ++|+++.|+..      .+|..++.+|..+        |+.+.|.+.|++|+.+
T Consensus        34 aa~arlqLal~YL~~gd~~~A~~nl-ekAL~~DPs~~------~a~~~~A~~Yq~~--------Ge~~~A~e~YrkAlsl   98 (250)
T COG3063          34 AAKARLQLALGYLQQGDYAQAKKNL-EKALEHDPSYY------LAHLVRAHYYQKL--------GENDLADESYRKALSL   98 (250)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHhCcccH------HHHHHHHHHHHHc--------CChhhHHHHHHHHHhc
Confidence            3678889999999999999999999 99999988764      5788999999988        9999999999999998


Q ss_pred             HHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHH
Q 000742          147 AQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWD  226 (1313)
Q Consensus       147 ~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~  226 (1313)
                                     .|...++++|.|..++.+|++++|..+|++|+..       ..-+..+..+.|+|.|..+.|+++
T Consensus        99 ---------------~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~-------P~Y~~~s~t~eN~G~Cal~~gq~~  156 (250)
T COG3063          99 ---------------APNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD-------PAYGEPSDTLENLGLCALKAGQFD  156 (250)
T ss_pred             ---------------CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC-------CCCCCcchhhhhhHHHHhhcCCch
Confidence                           4456789999999999999999999999999986       344556789999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 000742          227 KSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQ  280 (1313)
Q Consensus       227 ~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~  280 (1313)
                      .|.++|++++++.+      ........++..++..|+|..|..++++...-..
T Consensus       157 ~A~~~l~raL~~dp------~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~  204 (250)
T COG3063         157 QAEEYLKRALELDP------QFPPALLELARLHYKAGDYAPARLYLERYQQRGG  204 (250)
T ss_pred             hHHHHHHHHHHhCc------CCChHHHHHHHHHHhcccchHHHHHHHHHHhccc
Confidence            99999999999987      7778889999999999999999999998766554

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.52  E-value=9.7e-13  Score=148.59  Aligned_cols=225  Identities=16%  Similarity=0.053  Sum_probs=167.3

Q ss_pred             hhHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742            6 MQMSEAKRAYRSAKEEGN--RQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH   83 (1313)
Q Consensus         6 ~~~~~A~~~l~~a~~~~~--~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~   83 (1313)
                      .+.+.++..+.+++...+  +...+.+++.+|.+|...|++++|+..|++++++.+      ....+|+.+|.+|...|+
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P------~~~~a~~~lg~~~~~~g~  113 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP------DMADAYNYLGIYLTQAGN  113 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHCCC
Confidence            566788888888886433  345567799999999999999999999999999863      338899999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhH
Q 000742           84 FKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLK  163 (1313)
Q Consensus        84 ~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p  163 (1313)
                      +++|+..| ++++++.|+..      .++.++|.++...        |++++|++.|++++++...            .|
T Consensus       114 ~~~A~~~~-~~Al~l~P~~~------~a~~~lg~~l~~~--------g~~~eA~~~~~~al~~~P~------------~~  166 (296)
T PRK11189        114 FDAAYEAF-DSVLELDPTYN------YAYLNRGIALYYG--------GRYELAQDDLLAFYQDDPN------------DP  166 (296)
T ss_pred             HHHHHHHH-HHHHHhCCCCH------HHHHHHHHHHHHC--------CCHHHHHHHHHHHHHhCCC------------CH
Confidence            99999999 99999987653      5789999999988        9999999999999987211            11


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-
Q 000742          164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKI-  242 (1313)
Q Consensus       164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~-  242 (1313)
                       ....+   ...+...+++++|+..+.++....+.       +    .+ ..+.++...|++.++ ..++.+.+..+.. 
T Consensus       167 -~~~~~---~~l~~~~~~~~~A~~~l~~~~~~~~~-------~----~~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~  229 (296)
T PRK11189        167 -YRALW---LYLAESKLDPKQAKENLKQRYEKLDK-------E----QW-GWNIVEFYLGKISEE-TLMERLKAGATDNT  229 (296)
T ss_pred             -HHHHH---HHHHHccCCHHHHHHHHHHHHhhCCc-------c----cc-HHHHHHHHccCCCHH-HHHHHHHhcCCCcH
Confidence             11122   22345578999999999887644211       1    11 135555566666443 2333333211100 


Q ss_pred             chhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 000742          243 EHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQ  280 (1313)
Q Consensus       243 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~  280 (1313)
                      ...+....+|+++|.+|...|++++|+.+|++|++..+
T Consensus       230 ~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~  267 (296)
T PRK11189        230 ELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV  267 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            11235678999999999999999999999999998875

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.51  E-value=6.6e-13  Score=133.10  Aligned_cols=210  Identities=17%  Similarity=0.130  Sum_probs=181.3

Q ss_pred             cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhc
Q 000742           24 RQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDAS  103 (1313)
Q Consensus        24 ~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~  103 (1313)
                      ....+.+...+|.-|+..|++..|.+.+++|++..++.      ..+|..+|.+|...|+.+.|.+.| ++|+.+.|+.+
T Consensus        31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~------~~a~~~~A~~Yq~~Ge~~~A~e~Y-rkAlsl~p~~G  103 (250)
T COG3063          31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSY------YLAHLVRAHYYQKLGENDLADESY-RKALSLAPNNG  103 (250)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCChhhHHHHH-HHHHhcCCCcc
Confidence            35566788899999999999999999999999998554      889999999999999999999999 99999999987


Q ss_pred             CHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHH
Q 000742          104 DLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLE  183 (1313)
Q Consensus       104 ~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~  183 (1313)
                      +      ++++.|..+...        |++++|..+|++|+..             ...+..+.++.|+|.+..+.|+++
T Consensus       104 d------VLNNYG~FLC~q--------g~~~eA~q~F~~Al~~-------------P~Y~~~s~t~eN~G~Cal~~gq~~  156 (250)
T COG3063         104 D------VLNNYGAFLCAQ--------GRPEEAMQQFERALAD-------------PAYGEPSDTLENLGLCALKAGQFD  156 (250)
T ss_pred             c------hhhhhhHHHHhC--------CChHHHHHHHHHHHhC-------------CCCCCcchhhhhhHHHHhhcCCch
Confidence            5      579999999988        9999999999999865             123456789999999999999999


Q ss_pred             HHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhc
Q 000742          184 EAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQ  263 (1313)
Q Consensus       184 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g  263 (1313)
                      .|.++|++++++.+.         .......++..++..|+|..|..++++-.....      ..+..+.....+-...|
T Consensus       157 ~A~~~l~raL~~dp~---------~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~------~~A~sL~L~iriak~~g  221 (250)
T COG3063         157 QAEEYLKRALELDPQ---------FPPALLELARLHYKAGDYAPARLYLERYQQRGG------AQAESLLLGIRIAKRLG  221 (250)
T ss_pred             hHHHHHHHHHHhCcC---------CChHHHHHHHHHHhcccchHHHHHHHHHHhccc------ccHHHHHHHHHHHHHhc
Confidence            999999999999443         456778899999999999999999988766543      56677777778888899


Q ss_pred             CHHHHHHHHHHHHHHHHHc
Q 000742          264 KYDEAILCYQKALNLAQSM  282 (1313)
Q Consensus       264 ~~~~A~~~~~kal~~~~~~  282 (1313)
                      +-+.|-+|=.+....+|..
T Consensus       222 d~~~a~~Y~~qL~r~fP~s  240 (250)
T COG3063         222 DRAAAQRYQAQLQRLFPYS  240 (250)
T ss_pred             cHHHHHHHHHHHHHhCCCc
Confidence            9999888877776666644

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.50  E-value=1.4e-12  Score=147.43  Aligned_cols=229  Identities=12%  Similarity=0.059  Sum_probs=161.0

Q ss_pred             HccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcc
Q 000742           80 RLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRS  159 (1313)
Q Consensus        80 ~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~  159 (1313)
                      ..+..+.++..+ .+++...+.  +....+..|+.+|.+|...        |++++|+..|++++++             
T Consensus        38 ~~~~~e~~i~~~-~~~l~~~~~--~~~~~a~~~~~~g~~~~~~--------g~~~~A~~~~~~Al~l-------------   93 (296)
T PRK11189         38 PTLQQEVILARL-NQILASRDL--TDEERAQLHYERGVLYDSL--------GLRALARNDFSQALAL-------------   93 (296)
T ss_pred             CchHHHHHHHHH-HHHHccccC--CcHhhHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHc-------------
Confidence            345678888888 888865432  2234567899999999988        9999999999999987             


Q ss_pred             hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000742          160 SFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIIC  239 (1313)
Q Consensus       160 ~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~  239 (1313)
                        .|..+.+|+.+|.+|...|++++|+..|++++++.+         ....++.++|.++...|++++|++.|++++++.
T Consensus        94 --~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P---------~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~  162 (296)
T PRK11189         94 --RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP---------TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD  162 (296)
T ss_pred             --CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence              345688999999999999999999999999999843         356789999999999999999999999999986


Q ss_pred             HHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742          240 KKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKL  319 (1313)
Q Consensus       240 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l  319 (1313)
                      +.      .... .....++...+++++|+..+++++...+.  +.+. ...++..+|+...+ ..++            
T Consensus       163 P~------~~~~-~~~~~l~~~~~~~~~A~~~l~~~~~~~~~--~~~~-~~~~~~~lg~~~~~-~~~~------------  219 (296)
T PRK11189        163 PN------DPYR-ALWLYLAESKLDPKQAKENLKQRYEKLDK--EQWG-WNIVEFYLGKISEE-TLME------------  219 (296)
T ss_pred             CC------CHHH-HHHHHHHHccCCHHHHHHHHHHHHhhCCc--cccH-HHHHHHHccCCCHH-HHHH------------
Confidence            62      2111 11122345678899999999887643321  1111 12222223332111 0111            


Q ss_pred             HHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHH
Q 000742          320 TRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKA  399 (1313)
Q Consensus       320 ~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A  399 (1313)
                                                            .+.+.++....+      .+....+|+.+|.+|..+|++++|
T Consensus       220 --------------------------------------~~~~~~~~~~~l------~~~~~ea~~~Lg~~~~~~g~~~~A  255 (296)
T PRK11189        220 --------------------------------------RLKAGATDNTEL------AERLCETYFYLAKYYLSLGDLDEA  255 (296)
T ss_pred             --------------------------------------HHHhcCCCcHHH------HHHHHHHHHHHHHHHHHCCCHHHH
Confidence                                                  111111111111      133458899999999999999999


Q ss_pred             HHHHHHHHHHH
Q 000742          400 IKWYTKSWEMY  410 (1313)
Q Consensus       400 ~~~~~kal~l~  410 (1313)
                      +.+|++|+++.
T Consensus       256 ~~~~~~Al~~~  266 (296)
T PRK11189        256 AALFKLALANN  266 (296)
T ss_pred             HHHHHHHHHhC
Confidence            99999999765

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.50  E-value=7.2e-14  Score=145.08  Aligned_cols=207  Identities=18%  Similarity=0.156  Sum_probs=177.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcC
Q 000742           25 QEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASD  104 (1313)
Q Consensus        25 ~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~  104 (1313)
                      .....|-.++|.+|+..|-+.+|.+.++.+++..+       ..+++..++.+|.+..+...|+..+ .+.++..|..- 
T Consensus       220 ~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-------~~dTfllLskvY~ridQP~~AL~~~-~~gld~fP~~V-  290 (478)
T KOG1129|consen  220 TLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-------HPDTFLLLSKVYQRIDQPERALLVI-GEGLDSFPFDV-  290 (478)
T ss_pred             hHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-------chhHHHHHHHHHHHhccHHHHHHHH-hhhhhcCCchh-
Confidence            34455667999999999999999999999987652       3688999999999999999999999 99998876542 


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHH
Q 000742          105 LVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEE  184 (1313)
Q Consensus       105 ~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~  184 (1313)
                           ..+..++++|..+        +++++|.++|+.+++.               .|...++...+|..|+.-++.+-
T Consensus       291 -----T~l~g~ARi~eam--------~~~~~a~~lYk~vlk~---------------~~~nvEaiAcia~~yfY~~~PE~  342 (478)
T KOG1129|consen  291 -----TYLLGQARIHEAM--------EQQEDALQLYKLVLKL---------------HPINVEAIACIAVGYFYDNNPEM  342 (478)
T ss_pred             -----hhhhhhHHHHHHH--------HhHHHHHHHHHHHHhc---------------CCccceeeeeeeeccccCCChHH
Confidence                 4467899999999        9999999999999987               33456777888899999999999


Q ss_pred             HHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcC
Q 000742          185 AKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQK  264 (1313)
Q Consensus       185 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~  264 (1313)
                      |+.||.+.+.+-         ......+.|+|.|.+..++++-++..|++|+....+   ....+.+|+++|.+....|+
T Consensus       343 AlryYRRiLqmG---------~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~---~~~aaDvWYNlg~vaV~iGD  410 (478)
T KOG1129|consen  343 ALRYYRRILQMG---------AQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ---PGQAADVWYNLGFVAVTIGD  410 (478)
T ss_pred             HHHHHHHHHHhc---------CCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC---cchhhhhhhccceeEEeccc
Confidence            999999999982         224678999999999999999999999999998752   34568899999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 000742          265 YDEAILCYQKALNLAQ  280 (1313)
Q Consensus       265 ~~~A~~~~~kal~~~~  280 (1313)
                      +.-|.++|+-|+..++
T Consensus       411 ~nlA~rcfrlaL~~d~  426 (478)
T KOG1129|consen  411 FNLAKRCFRLALTSDA  426 (478)
T ss_pred             hHHHHHHHHHHhccCc
Confidence            9999999988876544

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.49  E-value=1.3e-11  Score=145.80  Aligned_cols=306  Identities=11%  Similarity=0.006  Sum_probs=207.4

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHH
Q 000742           27 EARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLV  106 (1313)
Q Consensus        27 ~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~  106 (1313)
                      .+...+.-|......|+|++|.+...++-+..    +.+  ...+...+.+....|+++.|..++ +++.+..++.... 
T Consensus        83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~----~~p--~l~~llaA~aA~~~g~~~~A~~~l-~~A~~~~~~~~~~-  154 (398)
T PRK10747         83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHA----EQP--VVNYLLAAEAAQQRGDEARANQHL-ERAAELADNDQLP-  154 (398)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcc----cch--HHHHHHHHHHHHHCCCHHHHHHHH-HHHHhcCCcchHH-
Confidence            44446778888889999999997777654321    111  333444566669999999999999 9998765554211 


Q ss_pred             HHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHH
Q 000742          107 EQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAK  186 (1313)
Q Consensus       107 ~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~  186 (1313)
                          .....+.++...        |++++|...++++.+.               .|....++..++.+|...|++++|+
T Consensus       155 ----~~l~~a~l~l~~--------g~~~~Al~~l~~~~~~---------------~P~~~~al~ll~~~~~~~gdw~~a~  207 (398)
T PRK10747        155 ----VEITRVRIQLAR--------NENHAARHGVDKLLEV---------------APRHPEVLRLAEQAYIRTGAWSSLL  207 (398)
T ss_pred             ----HHHHHHHHHHHC--------CCHHHHHHHHHHHHhc---------------CCCCHHHHHHHHHHHHHHHhHHHHH
Confidence                122347788766        9999999999998877               3455789999999999999999999


Q ss_pred             HHHHHHHhHhhhhccCCCchHHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Q 000742          187 KFLIRGLEICNEEEVSEDDDGRS----RLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRV  262 (1313)
Q Consensus       187 ~~~~~al~~~~~~~~~~~~~~~~----~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~  262 (1313)
                      +.+.+..+....     +.....    .++..+........+-    +.+.+..+..++  ..+..+.+...+|..+...
T Consensus       208 ~~l~~l~k~~~~-----~~~~~~~l~~~a~~~l~~~~~~~~~~----~~l~~~w~~lp~--~~~~~~~~~~~~A~~l~~~  276 (398)
T PRK10747        208 DILPSMAKAHVG-----DEEHRAMLEQQAWIGLMDQAMADQGS----EGLKRWWKNQSR--KTRHQVALQVAMAEHLIEC  276 (398)
T ss_pred             HHHHHHHHcCCC-----CHHHHHHHHHHHHHHHHHHHHHhcCH----HHHHHHHHhCCH--HHhCCHHHHHHHHHHHHHC
Confidence            999888775321     111111    2332222222222222    333333322221  1236678889999999999


Q ss_pred             cCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHH
Q 000742          263 QKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNAS  342 (1313)
Q Consensus       263 g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~  342 (1313)
                      |+.++|...++++++..   .+..  ...++..+                                              
T Consensus       277 g~~~~A~~~L~~~l~~~---~~~~--l~~l~~~l----------------------------------------------  305 (398)
T PRK10747        277 DDHDTAQQIILDGLKRQ---YDER--LVLLIPRL----------------------------------------------  305 (398)
T ss_pred             CCHHHHHHHHHHHHhcC---CCHH--HHHHHhhc----------------------------------------------
Confidence            99999999999998732   1221  11111110                                              


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHH
Q 000742          343 LDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALA  422 (1313)
Q Consensus       343 l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~  422 (1313)
                               ..++++++.+..++..      ...|+.+..+..+|.++...+++++|.++|+++++..|       ....
T Consensus       306 ---------~~~~~~~al~~~e~~l------k~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P-------~~~~  363 (398)
T PRK10747        306 ---------KTNNPEQLEKVLRQQI------KQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP-------DAYD  363 (398)
T ss_pred             ---------cCCChHHHHHHHHHHH------hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-------CHHH
Confidence                     0012222223222222      35577789999999999999999999999999998743       2344


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742          423 KVNMGNVLDSNGDWAGALDAFQEGYRIAV  451 (1313)
Q Consensus       423 ~~~lg~~y~~~g~~~~A~~~~~kAl~i~~  451 (1313)
                      +..+|.++.+.|+.++|..+|++++.+..
T Consensus       364 ~~~La~~~~~~g~~~~A~~~~~~~l~~~~  392 (398)
T PRK10747        364 YAWLADALDRLHKPEEAAAMRRDGLMLTL  392 (398)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            67899999999999999999999998753

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.49  E-value=1.3e-12  Score=143.39  Aligned_cols=198  Identities=19%  Similarity=0.175  Sum_probs=157.8

Q ss_pred             CCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHH
Q 000742           65 KHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAM  144 (1313)
Q Consensus        65 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al  144 (1313)
                      ...+..+..+|.+|...|++++|+..+ +++++..|..      ..++..+|.+|...        |++++|+.+|++++
T Consensus        28 ~~~~~~~~~la~~~~~~~~~~~A~~~~-~~~l~~~p~~------~~~~~~la~~~~~~--------~~~~~A~~~~~~al   92 (234)
T TIGR02521        28 NKAAKIRVQLALGYLEQGDLEVAKENL-DKALEHDPDD------YLAYLALALYYQQL--------GELEKAEDSFRRAL   92 (234)
T ss_pred             CcHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHhCccc------HHHHHHHHHHHHHc--------CCHHHHHHHHHHHH
Confidence            334788999999999999999999999 9999876543      35788899999988        99999999999999


Q ss_pred             HHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCC
Q 000742          145 KLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRM  224 (1313)
Q Consensus       145 ~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~  224 (1313)
                      +..               |....++.++|.++...|++++|+.++++++...       ..+.....+..+|.+|...|+
T Consensus        93 ~~~---------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~  150 (234)
T TIGR02521        93 TLN---------------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP-------LYPQPARSLENAGLCALKAGD  150 (234)
T ss_pred             hhC---------------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-------ccccchHHHHHHHHHHHHcCC
Confidence            872               2335688999999999999999999999998752       123345678899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHH
Q 000742          225 WDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIE  304 (1313)
Q Consensus       225 ~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~  304 (1313)
                      +++|..++++++...+      ....++..+|.++...|++++|+.+++++++..+.........+.++...|+..++..
T Consensus       151 ~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  224 (234)
T TIGR02521       151 FDKAEKYLTRALQIDP------QRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQR  224 (234)
T ss_pred             HHHHHHHHHHHHHhCc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence            9999999999998865      4567889999999999999999999999999843322222223334444444444443


Q ss_pred             H
Q 000742          305 V  305 (1313)
Q Consensus       305 ~  305 (1313)
                      .
T Consensus       225 ~  225 (234)
T TIGR02521       225 Y  225 (234)
T ss_pred             H
Confidence            3

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.47  E-value=1e-11  Score=158.90  Aligned_cols=376  Identities=13%  Similarity=0.017  Sum_probs=265.7

Q ss_pred             hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh
Q 000742            5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF   84 (1313)
Q Consensus         5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~   84 (1313)
                      .++++.|.+++..+.+.+-.. ....+..+...|.+.|++++|.+.|++..+         ....+|..+...|.+.|++
T Consensus       136 ~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---------~~~~t~n~li~~~~~~g~~  205 (697)
T PLN03081        136 LKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHVKCGMLIDARRLFDEMPE---------RNLASWGTIIGGLVDAGNY  205 (697)
T ss_pred             CCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHhcCCCHHHHHHHHhcCCC---------CCeeeHHHHHHHHHHCcCH
Confidence            356788899998888765443 345688889999999999999999987632         1256788899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCHHH------------------------------HHHHHHHHHHHHHHHhccCCcchhhHH
Q 000742           85 KDALIYQVKKHLELAKDASDLVE------------------------------QQRACTQLGRTYYEMFLRSDDDHYSIR  134 (1313)
Q Consensus        85 ~~A~~~~~~kal~l~~~~~~~~~------------------------------~a~a~~~lg~~y~~l~~~~~~~~~~~~  134 (1313)
                      ++|+..| ++.++..........                              ...++..+...|...        |+++
T Consensus       206 ~~A~~lf-~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~--------g~~~  276 (697)
T PLN03081        206 REAFALF-REMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC--------GDIE  276 (697)
T ss_pred             HHHHHHH-HHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHC--------CCHH
Confidence            9999999 888654221110000                              011233445555554        7777


Q ss_pred             HHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHH
Q 000742          135 NAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHN  214 (1313)
Q Consensus       135 ~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  214 (1313)
                      +|.+.|++.       ...           ...+|+.+...|.+.|++++|++.|++..+.       +-.+ ...+|..
T Consensus       277 ~A~~vf~~m-------~~~-----------~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~-------g~~p-d~~t~~~  330 (697)
T PLN03081        277 DARCVFDGM-------PEK-----------TTVAWNSMLAGYALHGYSEEALCLYYEMRDS-------GVSI-DQFTFSI  330 (697)
T ss_pred             HHHHHHHhC-------CCC-----------ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-------CCCC-CHHHHHH
Confidence            777776543       221           2468899999999999999999999987653       1122 2357888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHH
Q 000742          215 LGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQ  294 (1313)
Q Consensus       215 lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~  294 (1313)
                      +..+|...|++++|.+.+...++..-     .....++..+...|.+.|++++|.+.|++..+   .....+..+...|.
T Consensus       331 ll~a~~~~g~~~~a~~i~~~m~~~g~-----~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~  402 (697)
T PLN03081        331 MIRIFSRLALLEHAKQAHAGLIRTGF-----PLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYG  402 (697)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhCC-----CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHH
Confidence            88999999999999999888776521     24556788888999999999999999887653   22234455556777


Q ss_pred             hHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhCCchHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Q 000742          295 NIETVKKAIEVMDELKKEEQ-----NLKKLTRNMIIAKGTSQERKYLLQQN----------ASLDRLIEKSSMIFAWLKH  359 (1313)
Q Consensus       295 ~lg~~~~a~~~~~~a~~~~~-----~~~~l~~~l~~~~~~~~~a~~~~~~~----------~~l~~L~~~~~~~~~~~~A  359 (1313)
                      ..|+..+|+..|++....--     ....+.. .....+..+++..+++..          ..+..+...+...|.+++|
T Consensus       403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~-a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA  481 (697)
T PLN03081        403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS-ACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA  481 (697)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHH-HHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence            78888888888887654210     1111111 112345556666655543          2466778888888889998


Q ss_pred             HHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000742          360 CEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGA  439 (1313)
Q Consensus       360 ~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A  439 (1313)
                      .+++++.       .. .....+|..+...+...|+++.|...+++.+++.+      .....|..++.+|.+.|++++|
T Consensus       482 ~~~~~~~-------~~-~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p------~~~~~y~~L~~~y~~~G~~~~A  547 (697)
T PLN03081        482 YAMIRRA-------PF-KPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP------EKLNNYVVLLNLYNSSGRQAEA  547 (697)
T ss_pred             HHHHHHC-------CC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC------CCCcchHHHHHHHHhCCCHHHH
Confidence            8876543       22 23456799999999999999999999998876543      3445688999999999999999


Q ss_pred             HHHHHHHHH
Q 000742          440 LDAFQEGYR  448 (1313)
Q Consensus       440 ~~~~~kAl~  448 (1313)
                      .+.+++..+
T Consensus       548 ~~v~~~m~~  556 (697)
T PLN03081        548 AKVVETLKR  556 (697)
T ss_pred             HHHHHHHHH
Confidence            999987654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.46  E-value=1.1e-14  Score=180.05  Aligned_cols=229  Identities=19%  Similarity=0.179  Sum_probs=103.9

Q ss_pred             CcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHHHh
Q 000742          918 RLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVK  997 (1313)
Q Consensus       918 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~  997 (1313)
                      +|+.|+|++|.|+.     ++..+.  ++|++|+|++|.|+.     ++..+.  .+|+.|+|++|.+..      ++..
T Consensus       200 ~L~~L~Ls~N~Lts-----LP~~l~--~nL~~L~Ls~N~Lts-----LP~~l~--~~L~~L~Ls~N~L~~------LP~~  259 (754)
T PRK15370        200 QITTLILDNNELKS-----LPENLQ--GNIKTLYANSNQLTS-----IPATLP--DTIQEMELSINRITE------LPER  259 (754)
T ss_pred             CCcEEEecCCCCCc-----CChhhc--cCCCEEECCCCcccc-----CChhhh--ccccEEECcCCccCc------CChh
Confidence            45555555555553     222221  245555555555542     222121  245555555555211      1111


Q ss_pred             hccCCccceeecCCCCCChHHHHHHHHHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHHHH
Q 000742          998 LDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHK 1077 (1313)
Q Consensus       998 l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 1077 (1313)
                      +  .++|+.|+|++|+|+. .+..+     .++|+.|+|++|.|+..     ...+.   ++|+.|+|++|.++..    
T Consensus       260 l--~s~L~~L~Ls~N~L~~-LP~~l-----~~sL~~L~Ls~N~Lt~L-----P~~lp---~sL~~L~Ls~N~Lt~L----  319 (754)
T PRK15370        260 L--PSALQSLDLFHNKISC-LPENL-----PEELRYLSVYDNSIRTL-----PAHLP---SGITHLNVQSNSLTAL----  319 (754)
T ss_pred             H--hCCCCEEECcCCccCc-ccccc-----CCCCcEEECCCCccccC-----cccch---hhHHHHHhcCCccccC----
Confidence            1  1245555555555542 12111     12466666666655431     11111   2455666666665532    


Q ss_pred             HHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEccCCCCCh
Q 000742         1078 FTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKE 1157 (1313)
Q Consensus      1078 l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~ 1157 (1313)
                       +..+  .++|+.|++++|.++.. +..+.       .+|+.|+|++|+|+.     ++..+.  ++|+.|+|++|.|+.
T Consensus       320 -P~~l--~~sL~~L~Ls~N~Lt~L-P~~l~-------~sL~~L~Ls~N~L~~-----LP~~lp--~~L~~LdLs~N~Lt~  381 (754)
T PRK15370        320 -PETL--PPGLKTLEAGENALTSL-PASLP-------PELQVLDVSKNQITV-----LPETLP--PTITTLDVSRNALTN  381 (754)
T ss_pred             -Cccc--cccceeccccCCccccC-Chhhc-------CcccEEECCCCCCCc-----CChhhc--CCcCEEECCCCcCCC
Confidence             1111  24566666666665531 11111       136666666666652     232222  356666666666654


Q ss_pred             hhhhhhcccccccCCcccccccccccccccccccccccccCCCCcccccccCCccch
Q 000742         1158 LTLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIR 1214 (1313)
Q Consensus      1158 ~~~~~~l~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 1214 (1313)
                      ...... ..|+.+++++|.++.+|.         .+...+..++.+..|++.+|++.
T Consensus       382 LP~~l~-~sL~~LdLs~N~L~~LP~---------sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        382 LPENLP-AALQIMQASRNNLVRLPE---------SLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             CCHhHH-HHHHHHhhccCCcccCch---------hHHHHhhcCCCccEEEeeCCCcc
Confidence            432222 334445555555544431         11122334456667777777764

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=3e-12  Score=137.99  Aligned_cols=276  Identities=17%  Similarity=0.091  Sum_probs=213.7

Q ss_pred             hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh
Q 000742            5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF   84 (1313)
Q Consensus         5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~   84 (1313)
                      +..|..|+..|..|++..|+.  +..|...+..|...|+|++|.-.+++.+.+.+      .....+...+.++..+++.
T Consensus        62 ~k~Y~nal~~yt~Ai~~~pd~--a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd------~~~k~~~r~~~c~~a~~~~  133 (486)
T KOG0550|consen   62 QKTYGNALKNYTFAIDMCPDN--ASYYSNRAATLMMLGRFEEALGDARQSVRLKD------GFSKGQLREGQCHLALSDL  133 (486)
T ss_pred             HhhHHHHHHHHHHHHHhCccc--hhhhchhHHHHHHHHhHhhcccchhhheecCC------CccccccchhhhhhhhHHH
Confidence            567999999999999999998  44589999999999999999999999887763      2356777888888888888


Q ss_pred             HHHHHHHHHHHH------------HHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhcc
Q 000742           85 KDALIYQVKKHL------------ELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKE  152 (1313)
Q Consensus        85 ~~A~~~~~~kal------------~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~  152 (1313)
                      .+|...+ +..-            .+.+.......-..+-..-+.++..+        +++++|...--..+++      
T Consensus       134 i~A~~~~-~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~--------~~~~~a~~ea~~ilkl------  198 (486)
T KOG0550|consen  134 IEAEEKL-KSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFL--------GDYDEAQSEAIDILKL------  198 (486)
T ss_pred             HHHHHHh-hhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhc--------ccchhHHHHHHHHHhc------
Confidence            8887766 4211            11111111111123334445566655        8888888776666665      


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhcc---CCCchHHHHHHHHHHHHHHHcCCHHHHH
Q 000742          153 NPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEV---SEDDDGRSRLHHNLGNVYMELRMWDKSR  229 (1313)
Q Consensus       153 ~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~~lg~~y~~~g~~~~A~  229 (1313)
                               .+..+.+....|.+++..++.+.|+.+|++++.+.+....   .-..+.....+..-|+-.++.|+|.+|.
T Consensus       199 ---------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~  269 (486)
T KOG0550|consen  199 ---------DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAY  269 (486)
T ss_pred             ---------ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHH
Confidence                     3355788999999999999999999999999998665311   0112345566778899999999999999


Q ss_pred             HHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHH
Q 000742          230 EHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDEL  309 (1313)
Q Consensus       230 ~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a  309 (1313)
                      +.|..|+.+.|.  +....+..|.+.|.+..++|+..+|+...+.|+++++.........+.++..++.+.+|+..|+++
T Consensus       270 E~Yteal~idP~--n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a  347 (486)
T KOG0550|consen  270 ECYTEALNIDPS--NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKA  347 (486)
T ss_pred             HHHHHhhcCCcc--ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999985  445788999999999999999999999999999999988877777788888888888888888877


Q ss_pred             HHHHH
Q 000742          310 KKEEQ  314 (1313)
Q Consensus       310 ~~~~~  314 (1313)
                      .+..+
T Consensus       348 ~q~~~  352 (486)
T KOG0550|consen  348 MQLEK  352 (486)
T ss_pred             Hhhcc
Confidence            64433

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.45  E-value=3.4e-11  Score=126.06  Aligned_cols=234  Identities=17%  Similarity=0.138  Sum_probs=190.0

Q ss_pred             hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChH
Q 000742            6 MQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFK   85 (1313)
Q Consensus         6 ~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~   85 (1313)
                      ++-++|.+.|....+.++...++  ...+|+.|...|+.+.|+...+..++-. .. .......+.+.+|.-|...|-++
T Consensus        49 ~Q~dKAvdlF~e~l~~d~~t~e~--~ltLGnLfRsRGEvDRAIRiHQ~L~~sp-dl-T~~qr~lAl~qL~~Dym~aGl~D  124 (389)
T COG2956          49 NQPDKAVDLFLEMLQEDPETFEA--HLTLGNLFRSRGEVDRAIRIHQTLLESP-DL-TFEQRLLALQQLGRDYMAAGLLD  124 (389)
T ss_pred             cCcchHHHHHHHHHhcCchhhHH--HHHHHHHHHhcchHHHHHHHHHHHhcCC-CC-chHHHHHHHHHHHHHHHHhhhhh
Confidence            46688999999998887776666  8899999999999999999987654321 11 12234678899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHH
Q 000742           86 DALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEY  165 (1313)
Q Consensus        86 ~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~  165 (1313)
                      .|...| ....+.-      ...-.++..+..+|...        .+|++|++..++..++..+          .+...+
T Consensus       125 RAE~~f-~~L~de~------efa~~AlqqLl~IYQ~t--------reW~KAId~A~~L~k~~~q----------~~~~eI  179 (389)
T COG2956         125 RAEDIF-NQLVDEG------EFAEGALQQLLNIYQAT--------REWEKAIDVAERLVKLGGQ----------TYRVEI  179 (389)
T ss_pred             HHHHHH-HHHhcch------hhhHHHHHHHHHHHHHh--------hHHHHHHHHHHHHHHcCCc----------cchhHH
Confidence            999999 6655421      12235678889999877        8899998888777666322          134478


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchh
Q 000742          166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHC  245 (1313)
Q Consensus       166 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~  245 (1313)
                      +..|..+|..+....+.+.|...+.+|++..         +.-+++-..+|.++...|+|++|++.++.+++..+     
T Consensus       180 AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~---------~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~-----  245 (389)
T COG2956         180 AQFYCELAQQALASSDVDRARELLKKALQAD---------KKCVRASIILGRVELAKGDYQKAVEALERVLEQNP-----  245 (389)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC---------ccceehhhhhhHHHHhccchHHHHHHHHHHHHhCh-----
Confidence            9999999999999999999999999999984         44677888999999999999999999999988765     


Q ss_pred             hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc
Q 000742          246 QGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSM  282 (1313)
Q Consensus       246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~  282 (1313)
                      .....+...|..+|..+|+.++.+.++.++.+..+..
T Consensus       246 ~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~  282 (389)
T COG2956         246 EYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA  282 (389)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence            4778889999999999999999999999999876543

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.45  E-value=4.3e-11  Score=154.16  Aligned_cols=332  Identities=12%  Similarity=0.028  Sum_probs=179.6

Q ss_pred             hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChH
Q 000742            6 MQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFK   85 (1313)
Q Consensus         6 ~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~   85 (1313)
                      ++++.|.++|+.+.+.+..+ ....|..+-..|.+.|++++|.+.|+++.+..     ......+|..+...|.+.|+++
T Consensus       451 g~~e~A~~lf~~M~~~Gl~p-D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-----v~PdvvTynaLI~gy~k~G~~e  524 (1060)
T PLN03218        451 QDIDGALRVLRLVQEAGLKA-DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-----VEANVHTFGALIDGCARAGQVA  524 (1060)
T ss_pred             cCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHCcCHH
Confidence            44555555555555543321 12235555566666666666666665554321     1112455556666666666666


Q ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHH
Q 000742           86 DALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEY  165 (1313)
Q Consensus        86 ~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~  165 (1313)
                      +|+..| ++..+..-. ++    ..+|..+...|...        |++++|.+.|.+.......+           .|+ 
T Consensus       525 eAl~lf-~~M~~~Gv~-PD----~vTYnsLI~a~~k~--------G~~deA~~lf~eM~~~~~gi-----------~PD-  578 (1060)
T PLN03218        525 KAFGAY-GIMRSKNVK-PD----RVVFNALISACGQS--------GAVDRAFDVLAEMKAETHPI-----------DPD-  578 (1060)
T ss_pred             HHHHHH-HHHHHcCCC-CC----HHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHhcCCC-----------CCc-
Confidence            666666 554432111 11    13455555555544        66666666665554321000           011 


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchh
Q 000742          166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHC  245 (1313)
Q Consensus       166 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~  245 (1313)
                      ..+|..+...|.+.|++++|.+.|++..+.       +.. .....|..+...|.+.|++++|++.|++..+..    - 
T Consensus       579 ~vTynaLI~ay~k~G~ldeA~elf~~M~e~-------gi~-p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G----v-  645 (1060)
T PLN03218        579 HITVGALMKACANAGQVDRAKEVYQMIHEY-------NIK-GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG----V-  645 (1060)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-------CCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C-
Confidence            345555666666666666666666665443       111 123455666666666666666666666554321    1 


Q ss_pred             hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcc-ChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742          246 QGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSME-DEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMI  324 (1313)
Q Consensus       246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~-~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~  324 (1313)
                      .....+|..+...|.+.|++++|.++++++.+...... ..+..+...|...|++.+|...|++...             
T Consensus       646 ~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~-------------  712 (1060)
T PLN03218        646 KPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS-------------  712 (1060)
T ss_pred             CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-------------
Confidence            12244566666666666666666666666554321100 1112222334444444444444433310             


Q ss_pred             HhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHH
Q 000742          325 IAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYT  404 (1313)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~  404 (1313)
                       ....++        ..+++.+...+...+++++|.+++++....    +- .....+|..+-..|.+.|++++|...|.
T Consensus       713 -~g~~Pd--------vvtyN~LI~gy~k~G~~eeAlelf~eM~~~----Gi-~Pd~~Ty~sLL~a~~k~G~le~A~~l~~  778 (1060)
T PLN03218        713 -IKLRPT--------VSTMNALITALCEGNQLPKALEVLSEMKRL----GL-CPNTITYSILLVASERKDDADVGLDLLS  778 (1060)
T ss_pred             -cCCCCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence             000111        235788888899999999999999987532    22 2344677788899999999999999999


Q ss_pred             HHHHH
Q 000742          405 KSWEM  409 (1313)
Q Consensus       405 kal~l  409 (1313)
                      ++.+.
T Consensus       779 ~M~k~  783 (1060)
T PLN03218        779 QAKED  783 (1060)
T ss_pred             HHHHc
Confidence            98753

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.45  E-value=2.9e-09  Score=120.38  Aligned_cols=430  Identities=16%  Similarity=0.068  Sum_probs=255.3

Q ss_pred             cchhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHcc
Q 000742            3 RDEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLE   82 (1313)
Q Consensus         3 ~~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g   82 (1313)
                      ..+++|++|.+...+.+...|+...+  ++.--.+..+.++|++|++..++-....       ......+..+.|.++++
T Consensus        23 ~~~~e~e~a~k~~~Kil~~~pdd~~a--~~cKvValIq~~ky~~ALk~ikk~~~~~-------~~~~~~fEKAYc~Yrln   93 (652)
T KOG2376|consen   23 GKNGEYEEAVKTANKILSIVPDDEDA--IRCKVVALIQLDKYEDALKLIKKNGALL-------VINSFFFEKAYCEYRLN   93 (652)
T ss_pred             ccchHHHHHHHHHHHHHhcCCCcHhh--HhhhHhhhhhhhHHHHHHHHHHhcchhh-------hcchhhHHHHHHHHHcc
Confidence            45789999999999999999888777  7788888899999999996554322111       01122268899999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHH----------------
Q 000742           83 HFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKL----------------  146 (1313)
Q Consensus        83 ~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l----------------  146 (1313)
                      +.++|+..+ + .   .....+     .+....|.+++.+        ++|++|...|+...+-                
T Consensus        94 k~Dealk~~-~-~---~~~~~~-----~ll~L~AQvlYrl--------~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~  155 (652)
T KOG2376|consen   94 KLDEALKTL-K-G---LDRLDD-----KLLELRAQVLYRL--------ERYDEALDIYQHLAKNNSDDQDEERRANLLAV  155 (652)
T ss_pred             cHHHHHHHH-h-c---ccccch-----HHHHHHHHHHHHH--------hhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence            999999998 6 1   111111     2345667777777        8888888888765211                


Q ss_pred             --------HHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCC------CchHHHHHH
Q 000742          147 --------AQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSE------DDDGRSRLH  212 (1313)
Q Consensus       147 --------~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~~~  212 (1313)
                              .+.....        .....+.++|.|-++...|+|.+|++.+++|++++.+....+      .......+.
T Consensus       156 ~a~l~~~~~q~v~~v--------~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Ir  227 (652)
T KOG2376|consen  156 AAALQVQLLQSVPEV--------PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIR  227 (652)
T ss_pred             HHhhhHHHHHhccCC--------CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHH
Confidence                    1111111        113467889999999999999999999999988876532111      123356678


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHccCh---hHH
Q 000742          213 HNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYD-EAILCYQKALNLAQSMEDE---DAL  288 (1313)
Q Consensus       213 ~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~kal~~~~~~~~~---~~~  288 (1313)
                      ..++.++..+|+.++|...|...+...+  .|.+..+.+-+++-.+-....=++ .++..++.-.....+....   ...
T Consensus       228 vQlayVlQ~~Gqt~ea~~iy~~~i~~~~--~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q  305 (652)
T KOG2376|consen  228 VQLAYVLQLQGQTAEASSIYVDIIKRNP--ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ  305 (652)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHhcC--CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            8999999999999999999998887654  344555666666644332222222 1111111111111100000   001


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742          289 ASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGT-SQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKK  367 (1313)
Q Consensus       289 ~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~-~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~  367 (1313)
                      ...++.+.+.........+++.+....+          .+. ++.....+-+       .........+.++.+++.+..
T Consensus       306 k~~i~~N~~lL~l~tnk~~q~r~~~a~l----------p~~~p~~~~~~ll~-------~~t~~~~~~~~ka~e~L~~~~  368 (652)
T KOG2376|consen  306 KQAIYRNNALLALFTNKMDQVRELSASL----------PGMSPESLFPILLQ-------EATKVREKKHKKAIELLLQFA  368 (652)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHhC----------CccCchHHHHHHHH-------HHHHHHHHHHhhhHHHHHHHh
Confidence            1123333333333333333222111111          111 0110000000       000011112344444333332


Q ss_pred             HHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000742          368 RIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKS-IGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEG  446 (1313)
Q Consensus       368 ~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~-~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kA  446 (1313)
                      .     +.......+...++.+...+|+++.|++.+...++.... +.+....+.+--.+-..|+..++-..|...+.+|
T Consensus       369 ~-----~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~A  443 (652)
T KOG2376|consen  369 D-----GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSA  443 (652)
T ss_pred             c-----cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHH
Confidence            1     222334678888999999999999999999966533321 1111122223334455677888888899999999


Q ss_pred             HHHHHHcCChhHHHHHHHhhHHHHHHhhcCHHHHHHHHHHHHHHH
Q 000742          447 YRIAVEANLPSVQLSALENMHYSHMIRFDNIEEARRLQHEIDKLK  491 (1313)
Q Consensus       447 l~i~~~~~~~~~~~~al~~L~~~~~~~~~~~~~a~~~~e~~~~l~  491 (1313)
                      +...+...........++..+.....+.++.++|..+.+.+.++.
T Consensus       444 i~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n  488 (652)
T KOG2376|consen  444 IKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN  488 (652)
T ss_pred             HHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC
Confidence            998887655555555666555555556688888888888877654

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.43  E-value=3.1e-11  Score=136.57  Aligned_cols=351  Identities=14%  Similarity=0.070  Sum_probs=253.0

Q ss_pred             hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChH
Q 000742            6 MQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFK   85 (1313)
Q Consensus         6 ~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~   85 (1313)
                      +.++-|...|..+++..|.....  +...+..-...|..++-..++++|+...++.      ...+...+..+...|+..
T Consensus       530 ~~~~carAVya~alqvfp~k~sl--Wlra~~~ek~hgt~Esl~Allqkav~~~pka------e~lwlM~ake~w~agdv~  601 (913)
T KOG0495|consen  530 PAIECARAVYAHALQVFPCKKSL--WLRAAMFEKSHGTRESLEALLQKAVEQCPKA------EILWLMYAKEKWKAGDVP  601 (913)
T ss_pred             chHHHHHHHHHHHHhhccchhHH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCcc------hhHHHHHHHHHHhcCCcH
Confidence            45677888888888888887666  6666666677788888888899998887543      344556667778889999


Q ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHH
Q 000742           86 DALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEY  165 (1313)
Q Consensus        86 ~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~  165 (1313)
                      .|...+ .+|.+..+...+.      +  ++.+-...      ...+++.|...|.+|....                ..
T Consensus       602 ~ar~il-~~af~~~pnseei------w--laavKle~------en~e~eraR~llakar~~s----------------gT  650 (913)
T KOG0495|consen  602 AARVIL-DQAFEANPNSEEI------W--LAAVKLEF------ENDELERARDLLAKARSIS----------------GT  650 (913)
T ss_pred             HHHHHH-HHHHHhCCCcHHH------H--HHHHHHhh------ccccHHHHHHHHHHHhccC----------------Cc
Confidence            999999 8888877764432      2  22222221      3377888888888876631                22


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchh
Q 000742          166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHC  245 (1313)
Q Consensus       166 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~  245 (1313)
                      ..+|+.-+.....+++.++|+..++++++.++.         ....|..+|.++..+++.+.|.+.|...++.+|     
T Consensus       651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~---------f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP-----  716 (913)
T KOG0495|consen  651 ERVWMKSANLERYLDNVEEALRLLEEALKSFPD---------FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCP-----  716 (913)
T ss_pred             chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc---------hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCC-----
Confidence            467888888888889999999999999988655         466888999999999999999999998888877     


Q ss_pred             hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742          246 QGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMII  325 (1313)
Q Consensus       246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~  325 (1313)
                       ...-.|..++.+-.+.|+..+|...++++.--.|+....+......-...|....|...+.++.+..+..-.+....-.
T Consensus       717 -~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~  795 (913)
T KOG0495|consen  717 -NSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIW  795 (913)
T ss_pred             -CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHH
Confidence             7778888999999999999999999999988888777666666666667777777777777776555544333221111


Q ss_pred             hhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Q 000742          326 AKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTK  405 (1313)
Q Consensus       326 ~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~k  405 (1313)
                      ....+..                       -.+..+.+       ++-   ...+.++..+|..+....++++|.+||.+
T Consensus       796 le~~~~r-----------------------kTks~DAL-------kkc---e~dphVllaia~lfw~e~k~~kar~Wf~R  842 (913)
T KOG0495|consen  796 LEPRPQR-----------------------KTKSIDAL-------KKC---EHDPHVLLAIAKLFWSEKKIEKAREWFER  842 (913)
T ss_pred             hccCccc-----------------------chHHHHHH-------Hhc---cCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111100                       01111111       111   23457888899999999999999999999


Q ss_pred             HHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000742          406 SWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRI  449 (1313)
Q Consensus       406 al~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i  449 (1313)
                      |+++.++.+      .+|...-..+...|.-+.-.+.|.+....
T Consensus       843 avk~d~d~G------D~wa~fykfel~hG~eed~kev~~~c~~~  880 (913)
T KOG0495|consen  843 AVKKDPDNG------DAWAWFYKFELRHGTEEDQKEVLKKCETA  880 (913)
T ss_pred             HHccCCccc------hHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence            998876444      45777777888888877777777665543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.43  E-value=3.8e-13  Score=151.89  Aligned_cols=256  Identities=14%  Similarity=0.159  Sum_probs=110.1

Q ss_pred             chhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742            4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH   83 (1313)
Q Consensus         4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~   83 (1313)
                      ..|++++|.+.+.++.....+......+..+|.+....+++++|+..|++.+...+.      ....+..++.+ ...++
T Consensus        20 ~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~------~~~~~~~l~~l-~~~~~   92 (280)
T PF13429_consen   20 QRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA------NPQDYERLIQL-LQDGD   92 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc------ccccccccccc-ccccc
Confidence            468899999999765544322223344788999999999999999999999877643      24456666666 68899


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhH
Q 000742           84 FKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLK  163 (1313)
Q Consensus        84 ~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p  163 (1313)
                      +++|+.++ +++.+..+..       ..+.....++...        ++++++...++++.....             .+
T Consensus        93 ~~~A~~~~-~~~~~~~~~~-------~~l~~~l~~~~~~--------~~~~~~~~~l~~~~~~~~-------------~~  143 (280)
T PF13429_consen   93 PEEALKLA-EKAYERDGDP-------RYLLSALQLYYRL--------GDYDEAEELLEKLEELPA-------------AP  143 (280)
T ss_dssp             ---------------------------------H-HHHT--------T-HHHHHHHHHHHHH-T----------------
T ss_pred             cccccccc-cccccccccc-------chhhHHHHHHHHH--------hHHHHHHHHHHHHHhccC-------------CC
Confidence            99999999 8887654322       2344555666666        899999999988774311             12


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000742          164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIE  243 (1313)
Q Consensus       164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~  243 (1313)
                      ..+..+..+|.++.+.|++++|+..|++|++..+.         ...+...++.++...|+++++.+.++...+..+   
T Consensus       144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~---------~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~---  211 (280)
T PF13429_consen  144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPD---------DPDARNALAWLLIDMGDYDEAREALKRLLKAAP---  211 (280)
T ss_dssp             T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT----------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H---
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---------CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc---
Confidence            34678999999999999999999999999999443         556788899999999999998888888777764   


Q ss_pred             hhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHH
Q 000742          244 HCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELK  310 (1313)
Q Consensus       244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~  310 (1313)
                         .....+..+|.+|..+|++++|+.+|+++++..|.........+.++...|...+|...+.++.
T Consensus       212 ---~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  212 ---DDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             ---TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred             ---CHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence               4455778899999999999999999999999888766666666777777777777777766554

>PLN03210 Resistant to P

Probab=99.42  E-value=1.7e-13  Score=182.69  Aligned_cols=34  Identities=18%  Similarity=0.132  Sum_probs=15.7

Q ss_pred             cccEEEccCCCCChhHHHHHHHHHhcCCCccEEEccCC
Q 000742         1059 ESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGN 1096 (1313)
Q Consensus      1059 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N 1096 (1313)
                      +|+.|+|++|.....    ++..+..+++|+.|+|++|
T Consensus       779 sL~~L~Ls~n~~l~~----lP~si~~L~~L~~L~Ls~C  812 (1153)
T PLN03210        779 SLTRLFLSDIPSLVE----LPSSIQNLHKLEHLEIENC  812 (1153)
T ss_pred             cchheeCCCCCCccc----cChhhhCCCCCCEEECCCC
Confidence            455555555443222    3333444555555555544

syringae 6; Provisional

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.42  E-value=7.4e-11  Score=123.55  Aligned_cols=271  Identities=15%  Similarity=0.153  Sum_probs=200.9

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 000742           33 VIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRAC  112 (1313)
Q Consensus        33 ~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~  112 (1313)
                      ..|.-+.-..+.++|+..|...++..+      ...+++..+|..|...|..+.|+..-  +++-..|+... .....+.
T Consensus        40 v~GlNfLLs~Q~dKAvdlF~e~l~~d~------~t~e~~ltLGnLfRsRGEvDRAIRiH--Q~L~~spdlT~-~qr~lAl  110 (389)
T COG2956          40 VKGLNFLLSNQPDKAVDLFLEMLQEDP------ETFEAHLTLGNLFRSRGEVDRAIRIH--QTLLESPDLTF-EQRLLAL  110 (389)
T ss_pred             HhHHHHHhhcCcchHHHHHHHHHhcCc------hhhHHHHHHHHHHHhcchHHHHHHHH--HHHhcCCCCch-HHHHHHH
Confidence            456667777888999999988887553      33788889999999999999998775  44444444432 2345678


Q ss_pred             HHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000742          113 TQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRG  192 (1313)
Q Consensus       113 ~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~a  192 (1313)
                      ..+|.-|...        |-++.|...|....+.-+               .-..+...+..+|....+|++|++..++.
T Consensus       111 ~qL~~Dym~a--------Gl~DRAE~~f~~L~de~e---------------fa~~AlqqLl~IYQ~treW~KAId~A~~L  167 (389)
T COG2956         111 QQLGRDYMAA--------GLLDRAEDIFNQLVDEGE---------------FAEGALQQLLNIYQATREWEKAIDVAERL  167 (389)
T ss_pred             HHHHHHHHHh--------hhhhHHHHHHHHHhcchh---------------hhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            8888888877        888888888877655311               23467888888888889999999888888


Q ss_pred             HhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHH
Q 000742          193 LEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCY  272 (1313)
Q Consensus       193 l~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  272 (1313)
                      .++-++    ......+..|..+|..+....+.++|+..+.+|++..+      ...++-..+|.++...|+|++|++.+
T Consensus       168 ~k~~~q----~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~------~cvRAsi~lG~v~~~~g~y~~AV~~~  237 (389)
T COG2956         168 VKLGGQ----TYRVEIAQFYCELAQQALASSDVDRARELLKKALQADK------KCVRASIILGRVELAKGDYQKAVEAL  237 (389)
T ss_pred             HHcCCc----cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCc------cceehhhhhhHHHHhccchHHHHHHH
Confidence            877554    45566788888888888888899999999999888876      67778888899999999999999888


Q ss_pred             HHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHH
Q 000742          273 QKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSM  352 (1313)
Q Consensus       273 ~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~  352 (1313)
                      +.+++..+..-                                                                     
T Consensus       238 e~v~eQn~~yl---------------------------------------------------------------------  248 (389)
T COG2956         238 ERVLEQNPEYL---------------------------------------------------------------------  248 (389)
T ss_pred             HHHHHhChHHH---------------------------------------------------------------------
Confidence            88877655321                                                                     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Q 000742          353 IFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDS  432 (1313)
Q Consensus       353 ~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~  432 (1313)
                                                 +.+...|..+|.++|+.++.+.++.++.+...       ...+...++..-..
T Consensus       249 ---------------------------~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~-------g~~~~l~l~~lie~  294 (389)
T COG2956         249 ---------------------------SEVLEMLYECYAQLGKPAEGLNFLRRAMETNT-------GADAELMLADLIEL  294 (389)
T ss_pred             ---------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC-------CccHHHHHHHHHHH
Confidence                                       13444577889999999999999998886543       12234455666666


Q ss_pred             cCCHHHHHHHHHHHHH
Q 000742          433 NGDWAGALDAFQEGYR  448 (1313)
Q Consensus       433 ~g~~~~A~~~~~kAl~  448 (1313)
                      ..-.+.|..+..+-+.
T Consensus       295 ~~G~~~Aq~~l~~Ql~  310 (389)
T COG2956         295 QEGIDAAQAYLTRQLR  310 (389)
T ss_pred             hhChHHHHHHHHHHHh
Confidence            6666777776665443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.42  E-value=4.9e-10  Score=132.83  Aligned_cols=410  Identities=13%  Similarity=0.061  Sum_probs=276.2

Q ss_pred             chhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742            4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH   83 (1313)
Q Consensus         4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~   83 (1313)
                      ..+++..|+.-|+.|.+.+|....+  +..+|.+|...|.|..|++.|.+|..+.|..      ..+.+..+.+...+|+
T Consensus       574 ea~n~h~aV~~fQsALR~dPkD~n~--W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s------~y~~fk~A~~ecd~Gk  645 (1238)
T KOG1127|consen  574 EAHNLHGAVCEFQSALRTDPKDYNL--WLGLGEAYPESGRYSHALKVFTKASLLRPLS------KYGRFKEAVMECDNGK  645 (1238)
T ss_pred             CccchhhHHHHHHHHhcCCchhHHH--HHHHHHHHHhcCceehHHHhhhhhHhcCcHh------HHHHHHHHHHHHHhhh
Confidence            3467889999999999999987666  8899999999999999999999998887543      6778889999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCC--------
Q 000742           84 FKDALIYQVKKHLELAKDA-SDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENP--------  154 (1313)
Q Consensus        84 ~~~A~~~~~~kal~l~~~~-~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~--------  154 (1313)
                      |.+|+..+ ...+...... .-....+.++..++..+...        |-+.+|..+++++++.+.-.-...        
T Consensus       646 Ykeald~l-~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~--------gf~~kavd~~eksie~f~~~l~h~~~~~~~~W  716 (1238)
T KOG1127|consen  646 YKEALDAL-GLIIYAFSLERTGQNGLAESVIRDAKDSAIT--------GFQKKAVDFFEKSIESFIVSLIHSLQSDRLQW  716 (1238)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH--------HHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            99999999 8877654432 22344556666666666655        666666677666654432110000        


Q ss_pred             ----------------------------------CCCcc-------------hhhHHHHHHHHHHHHHHHH--------c
Q 000742          155 ----------------------------------ATSRS-------------SFLKEYIDAHNNIGMLQME--------L  179 (1313)
Q Consensus       155 ----------------------------------~~~~~-------------~~~p~~~~~~~~la~~y~~--------~  179 (1313)
                                                        ...+.             -.....+..|+++|..|++        +
T Consensus       717 i~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~  796 (1238)
T KOG1127|consen  717 IVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETM  796 (1238)
T ss_pred             HHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcc
Confidence                                              00000             0001123457777877766        3


Q ss_pred             CCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHH
Q 000742          180 DNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELH  259 (1313)
Q Consensus       180 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~  259 (1313)
                      .+...|+..+.+++++..+         ....|..||.+ ...|++.-|...|-+++...+      ....+|.++|.++
T Consensus       797 ~~~~~Ai~c~KkaV~L~an---------n~~~WnaLGVl-sg~gnva~aQHCfIks~~sep------~~~~~W~NlgvL~  860 (1238)
T KOG1127|consen  797 KDACTAIRCCKKAVSLCAN---------NEGLWNALGVL-SGIGNVACAQHCFIKSRFSEP------TCHCQWLNLGVLV  860 (1238)
T ss_pred             hhHHHHHHHHHHHHHHhhc---------cHHHHHHHHHh-hccchhhhhhhhhhhhhhccc------cchhheeccceeE
Confidence            3445788888888887433         34567777777 566888888888888887766      6677899999999


Q ss_pred             HHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHH------------HHHHHHHH-------H
Q 000742          260 YRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKK------------EEQNLKKL-------T  320 (1313)
Q Consensus       260 ~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~------------~~~~~~~l-------~  320 (1313)
                      ....+++.|...+.++..++|.....+...+.+....|+..+++..+....+            ++.....+       .
T Consensus       861 l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e  940 (1238)
T KOG1127|consen  861 LENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIE  940 (1238)
T ss_pred             EecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchH
Confidence            9999999999999999999998887777777778888888887777766321            11111111       0


Q ss_pred             HHHHHhhCCchHHH---HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHh
Q 000742          321 RNMIIAKGTSQERK---YLL----QQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKL  393 (1313)
Q Consensus       321 ~~l~~~~~~~~~a~---~~~----~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~  393 (1313)
                      ..+.....-+....   .++    +-+.++...|......+.|..|.+.+.+.+.+.+..-+......+--..|++++..
T Consensus       941 ~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lsl 1020 (1238)
T KOG1127|consen  941 ESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSL 1020 (1238)
T ss_pred             HHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhh
Confidence            11111111100000   000    11244555666677888888888888888887766555555555777889999999


Q ss_pred             hCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 000742          394 RKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANL  455 (1313)
Q Consensus       394 g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~  455 (1313)
                      |+|++|...+.+...-.       ...  -.......+-.|+|+++.+.|++|+.+.+...+
T Consensus      1021 gefe~A~~a~~~~~~ev-------dEd--i~gt~l~lFfkndf~~sl~~fe~aLsis~se~d 1073 (1238)
T KOG1127|consen 1021 GEFESAKKASWKEWMEV-------DED--IRGTDLTLFFKNDFFSSLEFFEQALSISNSESD 1073 (1238)
T ss_pred             cchhhHhhhhcccchhH-------HHH--HhhhhHHHHHHhHHHHHHHHHHHHhhhcccccc
Confidence            99998876554322100       000  111122226789999999999999999766443

>PLN03077 Protein ECB2; Provisional

Probab=99.42  E-value=7.9e-11  Score=154.53  Aligned_cols=377  Identities=11%  Similarity=0.009  Sum_probs=218.6

Q ss_pred             hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh
Q 000742            5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF   84 (1313)
Q Consensus         5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~   84 (1313)
                      .|++++|.++|.+..+.+-.+ ....|..+-..+...|+.+.|.+.+..+.+.-     ......+|..+...|.+.|++
T Consensus       266 ~g~~~eAl~lf~~M~~~g~~P-d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g-----~~~d~~~~n~Li~~y~k~g~~  339 (857)
T PLN03077        266 NGECLEGLELFFTMRELSVDP-DLMTITSVISACELLGDERLGREMHGYVVKTG-----FAVDVSVCNSLIQMYLSLGSW  339 (857)
T ss_pred             CCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC-----CccchHHHHHHHHHHHhcCCH
Confidence            577888999998887764332 23346667777778888888888877765442     122356777888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHH
Q 000742           85 KDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKE  164 (1313)
Q Consensus        85 ~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~  164 (1313)
                      ++|.+.| ++...     ++    ..+|..+...|...        |++++|++.|++..+.    +-.+         +
T Consensus       340 ~~A~~vf-~~m~~-----~d----~~s~n~li~~~~~~--------g~~~~A~~lf~~M~~~----g~~P---------d  388 (857)
T PLN03077        340 GEAEKVF-SRMET-----KD----AVSWTAMISGYEKN--------GLPDKALETYALMEQD----NVSP---------D  388 (857)
T ss_pred             HHHHHHH-hhCCC-----CC----eeeHHHHHHHHHhC--------CCHHHHHHHHHHHHHh----CCCC---------C
Confidence            8888888 66431     12    23577777777766        7888888888776432    1111         1


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhch
Q 000742          165 YIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEH  244 (1313)
Q Consensus       165 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~  244 (1313)
                       ..++..+-..+...|++++|.+.+..+.+.       +..+ ...++..+...|.+.|++++|.+.|++..+       
T Consensus       389 -~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~-------g~~~-~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-------  452 (857)
T PLN03077        389 -EITIASVLSACACLGDLDVGVKLHELAERK-------GLIS-YVVVANALIEMYSKCKCIDKALEVFHNIPE-------  452 (857)
T ss_pred             -ceeHHHHHHHHhccchHHHHHHHHHHHHHh-------CCCc-chHHHHHHHHHHHHcCCHHHHHHHHHhCCC-------
Confidence             134455555667777777777777777654       1111 345666777777777777777777765421       


Q ss_pred             hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHH
Q 000742          245 CQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQN----LKKLT  320 (1313)
Q Consensus       245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~----~~~l~  320 (1313)
                        ....+|..+...|...|++++|+..|++.+.-.+...........++..+|....+...+..+.+..-.    .....
T Consensus       453 --~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naL  530 (857)
T PLN03077        453 --KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNAL  530 (857)
T ss_pred             --CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHH
Confidence              223466667777777777777777777775421111111122223445555555555555444321100    00000


Q ss_pred             HHHHHhhCCchHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCH
Q 000742          321 RNMIIAKGTSQERKYLLQQ----NASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKF  396 (1313)
Q Consensus       321 ~~l~~~~~~~~~a~~~~~~----~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~  396 (1313)
                      -......+..+++...++.    ..+++.+...+...|+.++|.+.+++....    +..| ...+|..+-.++.+.|++
T Consensus       531 i~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~----g~~P-d~~T~~~ll~a~~~~g~v  605 (857)
T PLN03077        531 LDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVES----GVNP-DEVTFISLLCACSRSGMV  605 (857)
T ss_pred             HHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CcccHHHHHHHHhhcChH
Confidence            0111122333333333222    234666666667777777777777665432    1222 234455555667777777


Q ss_pred             HHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000742          397 NKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQE  445 (1313)
Q Consensus       397 ~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~k  445 (1313)
                      ++|..+|+...+...    .......|..+..+|.+.|++++|.+.+++
T Consensus       606 ~ea~~~f~~M~~~~g----i~P~~~~y~~lv~~l~r~G~~~eA~~~~~~  650 (857)
T PLN03077        606 TQGLEYFHSMEEKYS----ITPNLKHYACVVDLLGRAGKLTEAYNFINK  650 (857)
T ss_pred             HHHHHHHHHHHHHhC----CCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            777777776653221    112335566677777777777777776665

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.41  E-value=2.5e-12  Score=144.99  Aligned_cols=231  Identities=17%  Similarity=0.161  Sum_probs=181.2

Q ss_pred             chhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742            4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH   83 (1313)
Q Consensus         4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~   83 (1313)
                      ..|++.+|.-+|+.|++.+|...+|  |..||.+....++-..|+..+++++++.+..      ..++..||..|...|.
T Consensus       297 ~nG~L~~A~LafEAAVkqdP~haeA--W~~LG~~qaENE~E~~ai~AL~rcl~LdP~N------leaLmaLAVSytNeg~  368 (579)
T KOG1125|consen  297 KNGDLSEAALAFEAAVKQDPQHAEA--WQKLGITQAENENEQNAISALRRCLELDPTN------LEALMALAVSYTNEGL  368 (579)
T ss_pred             hcCCchHHHHHHHHHHhhChHHHHH--HHHhhhHhhhccchHHHHHHHHHHHhcCCcc------HHHHHHHHHHHhhhhh
Confidence            3577999999999999999998777  9999999999999999999999999987443      8899999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-hc--cCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcch
Q 000742           84 FKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEM-FL--RSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSS  160 (1313)
Q Consensus        84 ~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l-~~--~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~  160 (1313)
                      -.+|++++ .+-+...+.....          ....... +.  ++-.+...+..-.++|-.|...   ....       
T Consensus       369 q~~Al~~L-~~Wi~~~p~y~~l----------~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~---~~~~-------  427 (579)
T KOG1125|consen  369 QNQALKML-DKWIRNKPKYVHL----------VSAGENEDFENTKSFLDSSHLAHIQELFLEAARQ---LPTK-------  427 (579)
T ss_pred             HHHHHHHH-HHHHHhCccchhc----------cccCccccccCCcCCCCHHHHHHHHHHHHHHHHh---CCCC-------
Confidence            99999999 8887765443110          0000000 00  0001112233334444444333   2211       


Q ss_pred             hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742          161 FLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK  240 (1313)
Q Consensus       161 ~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~  240 (1313)
                         ..+.++..||.+|+..|+|++|++.|+.||..         .|.....|..||-++..-.+.++|+..|++|+++.|
T Consensus       428 ---~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v---------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP  495 (579)
T KOG1125|consen  428 ---IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV---------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQP  495 (579)
T ss_pred             ---CChhHHhhhHHHHhcchHHHHHHHHHHHHHhc---------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCC
Confidence               22578999999999999999999999999987         555788999999999999999999999999999976


Q ss_pred             HhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 000742          241 KIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQS  281 (1313)
Q Consensus       241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~  281 (1313)
                            ...++.++||..+..+|.|++|.++|-.|+.+.+.
T Consensus       496 ------~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  496 ------GYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             ------CeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence                  89999999999999999999999999999998876

>TIGR00540 hemY_coli hemY protein

Probab=99.41  E-value=4.8e-11  Score=141.82  Aligned_cols=309  Identities=10%  Similarity=0.018  Sum_probs=216.6

Q ss_pred             chhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742            4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH   83 (1313)
Q Consensus         4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~   83 (1313)
                      ..|+++.|.+.+.++.+..|.+...  +...|.++..+|++++|.+++.++.+..+    ... ..+....+.++...|+
T Consensus        96 ~~g~~~~A~~~l~~~~~~~~~~~~~--~llaA~aa~~~g~~~~A~~~l~~a~~~~p----~~~-l~~~~~~a~l~l~~~~  168 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADHAAEPVLN--LIKAAEAAQQRGDEARANQHLEEAAELAG----NDN-ILVEIARTRILLAQNE  168 (409)
T ss_pred             hCCCHHHHHHHHHHHhhcCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCC----cCc-hHHHHHHHHHHHHCCC
Confidence            4689999999999999888876666  67889999999999999999999976542    121 2344456999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhH
Q 000742           84 FKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLK  163 (1313)
Q Consensus        84 ~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p  163 (1313)
                      +++|...+ ++.++..|+..      .++..++.+|...        |++++|.+.+.+..+...    ..       .+
T Consensus       169 ~~~Al~~l-~~l~~~~P~~~------~~l~ll~~~~~~~--------~d~~~a~~~l~~l~k~~~----~~-------~~  222 (409)
T TIGR00540       169 LHAARHGV-DKLLEMAPRHK------EVLKLAEEAYIRS--------GAWQALDDIIDNMAKAGL----FD-------DE  222 (409)
T ss_pred             HHHHHHHH-HHHHHhCCCCH------HHHHHHHHHHHHH--------hhHHHHHHHHHHHHHcCC----CC-------HH
Confidence            99999999 99999887664      4678899999988        999999999888876510    00       11


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000742          164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIE  243 (1313)
Q Consensus       164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~  243 (1313)
                      ...........-+...+..+++.+.+.++.+..++     ..+....++..+|..+...|++++|.+.++++++..+...
T Consensus       223 ~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~-----~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~  297 (409)
T TIGR00540       223 EFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPR-----HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDR  297 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCH-----HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcc
Confidence            22222222222334445555566677777665432     1223567889999999999999999999999999876321


Q ss_pred             hhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742          244 HCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNM  323 (1313)
Q Consensus       244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l  323 (1313)
                      .   .. ............++.+.+++.++++++..|...+..     +                               
T Consensus       298 ~---~~-~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~-----l-------------------------------  337 (409)
T TIGR00540       298 A---IS-LPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCC-----I-------------------------------  337 (409)
T ss_pred             c---ch-hHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHH-----H-------------------------------
Confidence            1   00 011222233445788889999998888776544100     1                               


Q ss_pred             HHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHH
Q 000742          324 IIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWY  403 (1313)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~  403 (1313)
                                         +..+|..+...++|++|.++++++..+..    .|. ...+..+|.++.+.|+.++|.++|
T Consensus       338 -------------------l~sLg~l~~~~~~~~~A~~~le~a~a~~~----~p~-~~~~~~La~ll~~~g~~~~A~~~~  393 (409)
T TIGR00540       338 -------------------NRALGQLLMKHGEFIEAADAFKNVAACKE----QLD-ANDLAMAADAFDQAGDKAEAAAMR  393 (409)
T ss_pred             -------------------HHHHHHHHHHcccHHHHHHHHHHhHHhhc----CCC-HHHHHHHHHHHHHcCCHHHHHHHH
Confidence                               33455556667777777787775433321    222 234568999999999999999999


Q ss_pred             HHHHHHHHHhC
Q 000742          404 TKSWEMYKSIG  414 (1313)
Q Consensus       404 ~kal~l~~~~~  414 (1313)
                      ++++...-.++
T Consensus       394 ~~~l~~~~~~~  404 (409)
T TIGR00540       394 QDSLGLMLAIQ  404 (409)
T ss_pred             HHHHHHHhccc
Confidence            99987765443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=1.5e-10  Score=124.52  Aligned_cols=300  Identities=13%  Similarity=0.047  Sum_probs=206.2

Q ss_pred             HHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhc
Q 000742           72 QSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLK  151 (1313)
Q Consensus        72 ~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~  151 (1313)
                      +..+.++...++...|...+ - .++......+.   ...+..+|.+|+..        |++++|+..|+++.-+     
T Consensus       200 wika~Aq~~~~~hs~a~~t~-l-~le~~~~lr~N---vhLl~~lak~~~~~--------Gdn~~a~~~Fe~~~~~-----  261 (564)
T KOG1174|consen  200 WIKALAQMFNFKHSDASQTF-L-MLHDNTTLRCN---EHLMMALGKCLYYN--------GDYFQAEDIFSSTLCA-----  261 (564)
T ss_pred             HHHHHHHHHhcccchhhhHH-H-HHHhhccCCcc---HHHHHHHhhhhhhh--------cCchHHHHHHHHHhhC-----
Confidence            33444444455555554443 1 12222222222   23467788888877        9999999999988766     


Q ss_pred             cCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000742          152 ENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREH  231 (1313)
Q Consensus       152 ~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~  231 (1313)
                                .|......-..|..+...|++++-.......+.+.+.         .+.-|+--|.+.+..+++..|+.+
T Consensus       262 ----------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~---------ta~~wfV~~~~l~~~K~~~rAL~~  322 (564)
T KOG1174|consen  262 ----------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKY---------TASHWFVHAQLLYDEKKFERALNF  322 (564)
T ss_pred             ----------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhc---------chhhhhhhhhhhhhhhhHHHHHHH
Confidence                      5677778888888888999998887777777666322         344566667778888999999999


Q ss_pred             HHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000742          232 IEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKK  311 (1313)
Q Consensus       232 ~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~  311 (1313)
                      -+|+|...+      ....+|...|.++...+++++|+-.|+.|..+.|..-+.+..+...|...+.+.+|+-.-..+..
T Consensus       323 ~eK~I~~~~------r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~  396 (564)
T KOG1174|consen  323 VEKCIDSEP------RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR  396 (564)
T ss_pred             HHHHhccCc------ccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence            999998866      67788999999999999999999999999998876544333333333333444433333322222


Q ss_pred             HHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHH
Q 000742          312 EEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLI-EKS-SMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGES  389 (1313)
Q Consensus       312 ~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~-~~~-~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~  389 (1313)
                      ..++.                       +.++.-+| ... ....--++|.+++++++.+      .|....+-..+|..
T Consensus       397 ~~~~s-----------------------A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~------~P~Y~~AV~~~AEL  447 (564)
T KOG1174|consen  397 LFQNS-----------------------ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI------NPIYTPAVNLIAEL  447 (564)
T ss_pred             Hhhcc-----------------------hhhhhhhcceeeccCchhHHHHHHHHHhhhcc------CCccHHHHHHHHHH
Confidence            11111                       11122222 111 1112235677777777654      46666888899999


Q ss_pred             HHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000742          390 YQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIA  450 (1313)
Q Consensus       390 y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~  450 (1313)
                      +...|.++.++..+++++..++       +...+..+|.++...+.+++|+.+|..|+.+.
T Consensus       448 ~~~Eg~~~D~i~LLe~~L~~~~-------D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d  501 (564)
T KOG1174|consen  448 CQVEGPTKDIIKLLEKHLIIFP-------DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD  501 (564)
T ss_pred             HHhhCccchHHHHHHHHHhhcc-------ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence            9999999999999999998764       34568899999999999999999999999874

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.40  E-value=7.8e-12  Score=141.10  Aligned_cols=270  Identities=16%  Similarity=0.125  Sum_probs=195.5

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 000742           32 NVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRA  111 (1313)
Q Consensus        32 ~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a  111 (1313)
                      +..|..+++.|+..+|.-.|+.|+...|++      +++|..||.++...++-..|+..+ ++++++.|++.      .+
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~h------aeAW~~LG~~qaENE~E~~ai~AL-~rcl~LdP~Nl------ea  355 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQH------AEAWQKLGITQAENENEQNAISAL-RRCLELDPTNL------EA  355 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHH------HHHHHHhhhHhhhccchHHHHHHH-HHHHhcCCccH------HH
Confidence            467889999999999999999999887655      999999999999999999999999 99999988764      57


Q ss_pred             HHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000742          112 CTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIR  191 (1313)
Q Consensus       112 ~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~  191 (1313)
                      +..||..|...        |.-.+|.+++.+-+..-.+..........    ....    ...-......+..-.++|..
T Consensus       356 LmaLAVSytNe--------g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~----~~~~----~~~s~~~~~~l~~i~~~fLe  419 (579)
T KOG1125|consen  356 LMALAVSYTNE--------GLQNQALKMLDKWIRNKPKYVHLVSAGEN----EDFE----NTKSFLDSSHLAHIQELFLE  419 (579)
T ss_pred             HHHHHHHHhhh--------hhHHHHHHHHHHHHHhCccchhccccCcc----cccc----CCcCCCCHHHHHHHHHHHHH
Confidence            89999999977        88889999998887653221110000000    0000    00000000112223334444


Q ss_pred             HHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHH
Q 000742          192 GLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILC  271 (1313)
Q Consensus       192 al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  271 (1313)
                      |....+       ....+.++..||.+|...|+|++|+.+|+.|+...|      .....|+.||..+..-.+.++|+..
T Consensus       420 aa~~~~-------~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~P------nd~~lWNRLGAtLAN~~~s~EAIsA  486 (579)
T KOG1125|consen  420 AARQLP-------TKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKP------NDYLLWNRLGATLANGNRSEEAISA  486 (579)
T ss_pred             HHHhCC-------CCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCC------chHHHHHHhhHHhcCCcccHHHHHH
Confidence            433311       123467889999999999999999999999999866      8889999999999999999999999


Q ss_pred             HHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHH
Q 000742          272 YQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSS  351 (1313)
Q Consensus       272 ~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~  351 (1313)
                      |.+|+++.|.+.                                                                    
T Consensus       487 Y~rALqLqP~yV--------------------------------------------------------------------  498 (579)
T KOG1125|consen  487 YNRALQLQPGYV--------------------------------------------------------------------  498 (579)
T ss_pred             HHHHHhcCCCee--------------------------------------------------------------------
Confidence            999999887543                                                                    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhH----HHHHHHHH
Q 000742          352 MIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQ----ALAKVNMG  427 (1313)
Q Consensus       352 ~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~----~~~~~~lg  427 (1313)
                                                   ++.++||..|+.+|.|++|+++|-.||.+.+........    ..+|-.|=
T Consensus       499 -----------------------------R~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR  549 (579)
T KOG1125|consen  499 -----------------------------RVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLR  549 (579)
T ss_pred             -----------------------------eeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHH
Confidence                                         456678889999999999999999999888764332211    23455554


Q ss_pred             HHHHHcCCHHHHH
Q 000742          428 NVLDSNGDWAGAL  440 (1313)
Q Consensus       428 ~~y~~~g~~~~A~  440 (1313)
                      .++..+++.+-+.
T Consensus       550 ~als~~~~~D~l~  562 (579)
T KOG1125|consen  550 LALSAMNRSDLLQ  562 (579)
T ss_pred             HHHHHcCCchHHH
Confidence            5555556555433

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.40  E-value=3.6e-10  Score=131.51  Aligned_cols=379  Identities=11%  Similarity=0.012  Sum_probs=270.6

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHH
Q 000742           28 ARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVE  107 (1313)
Q Consensus        28 a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~  107 (1313)
                      +.+|-.+.......|+|+.+.+.|++++...-.      ..+.|+.++.+|...|.-..|+... ++.+...+...+.. 
T Consensus       323 ~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~------~~e~w~~~als~saag~~s~Av~ll-~~~~~~~~~ps~~s-  394 (799)
T KOG4162|consen  323 AAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG------EHERWYQLALSYSAAGSDSKAVNLL-RESLKKSEQPSDIS-  394 (799)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh------hHHHHHHHHHHHHHhccchHHHHHH-HhhcccccCCCcch-
Confidence            445778888999999999999999999877632      3688999999999999999999999 99888876554443 


Q ss_pred             HHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcC-------
Q 000742          108 QQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELD-------  180 (1313)
Q Consensus       108 ~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g-------  180 (1313)
                         .+...+.++...       .+.++++++|..+|+..+....+.          ..+.+|..+|.+|..+-       
T Consensus       395 ---~~Lmasklc~e~-------l~~~eegldYA~kai~~~~~~~~~----------l~~~~~l~lGi~y~~~A~~a~~~s  454 (799)
T KOG4162|consen  395 ---VLLMASKLCIER-------LKLVEEGLDYAQKAISLLGGQRSH----------LKPRGYLFLGIAYGFQARQANLKS  454 (799)
T ss_pred             ---HHHHHHHHHHhc-------hhhhhhHHHHHHHHHHHhhhhhhh----------hhhhHHHHHHHHHHhHhhcCCChH
Confidence               344444444432       288999999999999977443322          34677888888775432       


Q ss_pred             ----CHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHH
Q 000742          181 ----NLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLG  256 (1313)
Q Consensus       181 ----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la  256 (1313)
                          ...++++.+++|++..         +....+.++++.-|..+++.+.|..+.++++++.+     .+.+.+|..+|
T Consensus       455 eR~~~h~kslqale~av~~d---------~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~-----~~~~~~whLLA  520 (799)
T KOG4162|consen  455 ERDALHKKSLQALEEAVQFD---------PTDPLVIFYLALQYAEQRQLTSALDYAREALALNR-----GDSAKAWHLLA  520 (799)
T ss_pred             HHHHHHHHHHHHHHHHHhcC---------CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC-----CccHHHHHHHH
Confidence                3466777788887763         22347889999999999999999999999999955     37889999999


Q ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHH
Q 000742          257 ELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYL  336 (1313)
Q Consensus       257 ~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~  336 (1313)
                      .++...+++.+|+.....+++-.++..........+-..+++..+++.-.......|++.....+....           
T Consensus       521 LvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~-----------  589 (799)
T KOG4162|consen  521 LVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDE-----------  589 (799)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhh-----------
Confidence            999999999999999999999888754443333344455677777777777777666655444433321           


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------CC--chhhHHHHHHHHHHHHHhhCH
Q 000742          337 LQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASEL------------------CD--KGKLSDSFLVIGESYQKLRKF  396 (1313)
Q Consensus       337 ~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~------------------~~--~~~~a~~~~~lg~~y~~~g~~  396 (1313)
                         +..+..-+.......+..+|.+.+.++..+...-                  .+  ....-..+...|..+...++.
T Consensus       590 ---g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~  666 (799)
T KOG4162|consen  590 ---GKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGND  666 (799)
T ss_pred             ---hhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCc
Confidence               1111111111112222233333333332222110                  00  011245677789999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhHHHHHHhh
Q 000742          397 NKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRF  474 (1313)
Q Consensus       397 ~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~~L~~~~~~~~  474 (1313)
                      ++|..++.+|-.+.+      ..+..|+..|..+...|++++|.+.|..|+.+.  +++    ..+...+|.++...|
T Consensus       667 ~~a~~CL~Ea~~~~~------l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld--P~h----v~s~~Ala~~lle~G  732 (799)
T KOG4162|consen  667 DEARSCLLEASKIDP------LSASVYYLRGLLLEVKGQLEEAKEAFLVALALD--PDH----VPSMTALAELLLELG  732 (799)
T ss_pred             hHHHHHHHHHHhcch------hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC--CCC----cHHHHHHHHHHHHhC
Confidence            999999999998764      667889999999999999999999999999885  333    346667787777655

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.39  E-value=8.6e-13  Score=142.90  Aligned_cols=299  Identities=20%  Similarity=0.226  Sum_probs=223.1

Q ss_pred             CeEEecCCCCCcCCHHHHHHHhhcCCCcCEEEecCCC-CCHHHHHHHHHHHHhcccCccceEEEccCC-CCCHHHHHHHH
Q 000742          833 DEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNL-LGNGTMEKLQQFFISSCQNYVDLTLDLHCN-RFGPTTLFQIC  910 (1313)
Q Consensus       833 ~~l~l~~~~l~~~~~~~l~~~L~~~~~L~~L~Ls~n~-l~~~~~~~L~~~l~~~~~~~~l~~L~Ls~n-~l~~~~~~~l~  910 (1313)
                      ++|++.+|.  +....++-.+...+|+++.|++.++. |++..+..+++.      ...+..|+|..| .|++..+..++
T Consensus       141 k~LSlrG~r--~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~------C~~l~~l~L~~c~~iT~~~Lk~la  212 (483)
T KOG4341|consen  141 KELSLRGCR--AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARY------CRKLRHLNLHSCSSITDVSLKYLA  212 (483)
T ss_pred             ccccccccc--cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHh------cchhhhhhhcccchhHHHHHHHHH
Confidence            557888874  34445566666788999999999987 899888888873      456788888874 67888888888


Q ss_pred             hcccCCCCcCEEEecCC-CCChhHHHHHHHHHhcCCCCcEEEeecC-CCCHHHHHHHHHHHhcCCCccEEEeCCCCCCCh
Q 000742          911 ECPVLFTRLGVLNLSGN-RLTDACGSYLSTILKNCKVLYSLNIENC-SITSRTIQKVADALGAESTLAQLCIGYNSPVTG  988 (1313)
Q Consensus       911 ~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  988 (1313)
                      +.   |++|++|++|.+ .|++.|++.+.   ..++.++.+.+.+| .++.+.   +..+=..+.-+..+++.++..+++
T Consensus       213 ~g---C~kL~~lNlSwc~qi~~~gv~~~~---rG~~~l~~~~~kGC~e~~le~---l~~~~~~~~~i~~lnl~~c~~lTD  283 (483)
T KOG4341|consen  213 EG---CRKLKYLNLSWCPQISGNGVQALQ---RGCKELEKLSLKGCLELELEA---LLKAAAYCLEILKLNLQHCNQLTD  283 (483)
T ss_pred             Hh---hhhHHHhhhccCchhhcCcchHHh---ccchhhhhhhhcccccccHHH---HHHHhccChHhhccchhhhccccc
Confidence            76   799999999998 67887766554   45667888888877 344433   333335677788888888888888


Q ss_pred             hhHHHHHHhhccCCccceeecCCCC-CChHHHHHHHHHhhcCCccEEEccCCC-CCCchHHHHHHHHhcCCCcccEEEcc
Q 000742          989 NAITNLLVKLDTLKSFSELNLNGLK-LSKPVVDRLCQLAKTSCLTHLMLGCTN-LGSDGSLQLVESLFSRAQESVKLDLS 1066 (1313)
Q Consensus       989 ~~~~~~~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~Ls 1066 (1313)
                      .++..+..   .+..|+.|..+++. +++.....++.  .+++|+.|-|+++. +++.|+..++    .++..|+.|++.
T Consensus       284 ~~~~~i~~---~c~~lq~l~~s~~t~~~d~~l~aLg~--~~~~L~~l~l~~c~~fsd~~ft~l~----rn~~~Le~l~~e  354 (483)
T KOG4341|consen  284 EDLWLIAC---GCHALQVLCYSSCTDITDEVLWALGQ--HCHNLQVLELSGCQQFSDRGFTMLG----RNCPHLERLDLE  354 (483)
T ss_pred             hHHHHHhh---hhhHhhhhcccCCCCCchHHHHHHhc--CCCceEEEeccccchhhhhhhhhhh----cCChhhhhhccc
Confidence            88666554   67789999998876 44444444432  35789999999986 8888876654    667789999999


Q ss_pred             CCCCChhHHHHHHHHHhcCCCccEEEccCCC-CChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCc
Q 000742         1067 YCGLESTCIHKFTASVSLVHGILELNLGGNP-IMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTL 1145 (1313)
Q Consensus      1067 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L 1145 (1313)
                      .|.+...+  .+...-.+++.|+.|.|+++. |+|+|...+...-.. ...|+.|.|++|..+.+   ...+.+..|++|
T Consensus       355 ~~~~~~d~--tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~-~~~l~~lEL~n~p~i~d---~~Le~l~~c~~L  428 (483)
T KOG4341|consen  355 ECGLITDG--TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS-LEGLEVLELDNCPLITD---ATLEHLSICRNL  428 (483)
T ss_pred             ccceehhh--hHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc-ccccceeeecCCCCchH---HHHHHHhhCccc
Confidence            99976654  344444579999999999997 889988887764332 23599999999987655   356678899999


Q ss_pred             cEEEccCCC-CChhhhhhh
Q 000742         1146 EELNLADNA-SKELTLQQN 1163 (1313)
Q Consensus      1146 ~~L~Ls~N~-i~~~~~~~~ 1163 (1313)
                      +.++|-+.. ++..++.-+
T Consensus       429 eri~l~~~q~vtk~~i~~~  447 (483)
T KOG4341|consen  429 ERIELIDCQDVTKEAISRF  447 (483)
T ss_pred             ceeeeechhhhhhhhhHHH
Confidence            999998874 666655543

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.38  E-value=3.5e-10  Score=133.97  Aligned_cols=388  Identities=12%  Similarity=0.016  Sum_probs=263.9

Q ss_pred             hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChH
Q 000742            6 MQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFK   85 (1313)
Q Consensus         6 ~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~   85 (1313)
                      +....|...|-++++.++....+  +..+|.+|...-+...|.+.|++|.++..      ..+.+.-..+..|.+..+++
T Consensus       472 K~~~~al~ali~alrld~~~apa--f~~LG~iYrd~~Dm~RA~kCf~KAFeLDa------tdaeaaaa~adtyae~~~we  543 (1238)
T KOG1127|consen  472 KNSALALHALIRALRLDVSLAPA--FAFLGQIYRDSDDMKRAKKCFDKAFELDA------TDAEAAAASADTYAEESTWE  543 (1238)
T ss_pred             hhHHHHHHHHHHHHhcccchhHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCc------hhhhhHHHHHHHhhccccHH
Confidence            44677888888888888886666  77899999988899999999999988763      33777778899999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHH
Q 000742           86 DALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEY  165 (1313)
Q Consensus        86 ~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~  165 (1313)
                      +|.... -.+-+.++...    ....|..+|..|..-        ++...|+..|+.|+..               .|..
T Consensus       544 ~a~~I~-l~~~qka~a~~----~k~nW~~rG~yyLea--------~n~h~aV~~fQsALR~---------------dPkD  595 (1238)
T KOG1127|consen  544 EAFEIC-LRAAQKAPAFA----CKENWVQRGPYYLEA--------HNLHGAVCEFQSALRT---------------DPKD  595 (1238)
T ss_pred             HHHHHH-HHHhhhchHHH----HHhhhhhccccccCc--------cchhhHHHHHHHHhcC---------------Cchh
Confidence            998877 66555544332    123455678877755        8899999999999987               5677


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-ch
Q 000742          166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKI-EH  244 (1313)
Q Consensus       166 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~-~~  244 (1313)
                      ...|..+|.+|...|.|..|++.|.+|..+         +|......+..+.+...+|+|.+|+..+...+...... ..
T Consensus       596 ~n~W~gLGeAY~~sGry~~AlKvF~kAs~L---------rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~  666 (1238)
T KOG1127|consen  596 YNLWLGLGEAYPESGRYSHALKVFTKASLL---------RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTG  666 (1238)
T ss_pred             HHHHHHHHHHHHhcCceehHHHhhhhhHhc---------CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            889999999999999999999999999888         45566777888999999999999999999888776532 33


Q ss_pred             hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChh-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742          245 CQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDED-ALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNM  323 (1313)
Q Consensus       245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~-~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l  323 (1313)
                      ..+.+.++..++..+...|=+.+|..+++++++...-.-... ......+.-+|+.....-..+--.-..--...+..++
T Consensus       667 q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~  746 (1238)
T KOG1127|consen  667 QNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQL  746 (1238)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            456778888888888888989999999999888764322111 0111122223332221111110000000000000000


Q ss_pred             HHh-hCCchH-----------HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhCCchhhHHHH
Q 000742          324 IIA-KGTSQE-----------RKYLLQQNASLDRLIEKSSM--------IFAWLKHCEYAKRKKRIASELCDKGKLSDSF  383 (1313)
Q Consensus       324 ~~~-~~~~~~-----------a~~~~~~~~~l~~L~~~~~~--------~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~  383 (1313)
                      ... .....+           ...+......+-++|..|..        +.+-..|+..+++++.+....      ...+
T Consensus       747 e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann------~~~W  820 (1238)
T KOG1127|consen  747 EKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANN------EGLW  820 (1238)
T ss_pred             HhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhcc------HHHH
Confidence            000 000000           00111112233444444322        233356777888877765432      3777


Q ss_pred             HHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742          384 LVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAV  451 (1313)
Q Consensus       384 ~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~  451 (1313)
                      ..||.+ ...|++.-|...|-+++...+      ....+|.++|.++.+..+++-|...|.++..+..
T Consensus       821 naLGVl-sg~gnva~aQHCfIks~~sep------~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP  881 (1238)
T KOG1127|consen  821 NALGVL-SGIGNVACAQHCFIKSRFSEP------TCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDP  881 (1238)
T ss_pred             HHHHHh-hccchhhhhhhhhhhhhhccc------cchhheeccceeEEecccHHHhhHHHHhhhhcCc
Confidence            888887 666899999999999886654      4456799999999999999999999999887753

>PLN03077 Protein ECB2; Provisional

Probab=99.37  E-value=2.6e-10  Score=149.72  Aligned_cols=404  Identities=12%  Similarity=-0.034  Sum_probs=288.5

Q ss_pred             hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh
Q 000742            5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF   84 (1313)
Q Consensus         5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~   84 (1313)
                      .|++++|.+.|+...+.     ....|+.+-..|.+.|++++|++.|.+..+..     ......+|..+...+...|+.
T Consensus       235 ~g~~~~A~~lf~~m~~~-----d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g-----~~Pd~~ty~~ll~a~~~~g~~  304 (857)
T PLN03077        235 CGDVVSARLVFDRMPRR-----DCISWNAMISGYFENGECLEGLELFFTMRELS-----VDPDLMTITSVISACELLGDE  304 (857)
T ss_pred             CCCHHHHHHHHhcCCCC-----CcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC-----CCCChhHHHHHHHHHHhcCCh
Confidence            47889999999887532     22348889999999999999999999987542     122256778888888999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHH
Q 000742           85 KDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKE  164 (1313)
Q Consensus        85 ~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~  164 (1313)
                      +.|.+.+ ..+.+..-. ++    ..+|..+...|...        |++++|.+.|++..       .+.          
T Consensus       305 ~~a~~l~-~~~~~~g~~-~d----~~~~n~Li~~y~k~--------g~~~~A~~vf~~m~-------~~d----------  353 (857)
T PLN03077        305 RLGREMH-GYVVKTGFA-VD----VSVCNSLIQMYLSL--------GSWGEAEKVFSRME-------TKD----------  353 (857)
T ss_pred             HHHHHHH-HHHHHhCCc-cc----hHHHHHHHHHHHhc--------CCHHHHHHHHhhCC-------CCC----------
Confidence            9999999 777664322 12    35688889999877        99999999888743       111          


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhch
Q 000742          165 YIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEH  244 (1313)
Q Consensus       165 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~  244 (1313)
                       ..+|+.+...|.+.|++++|++.|++..+.       +-.|. ...+..+-..+...|++++|.+.++.+.+..-    
T Consensus       354 -~~s~n~li~~~~~~g~~~~A~~lf~~M~~~-------g~~Pd-~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~----  420 (857)
T PLN03077        354 -AVSWTAMISGYEKNGLPDKALETYALMEQD-------NVSPD-EITIASVLSACACLGDLDVGVKLHELAERKGL----  420 (857)
T ss_pred             -eeeHHHHHHHHHhCCCHHHHHHHHHHHHHh-------CCCCC-ceeHHHHHHHHhccchHHHHHHHHHHHHHhCC----
Confidence             347899999999999999999999987654       11222 23555666688999999999999998876532    


Q ss_pred             hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHH
Q 000742          245 CQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQ----NLKKLT  320 (1313)
Q Consensus       245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~----~~~~l~  320 (1313)
                       .....++..+...|.+.|++++|.+.|++..+   .....+..+...|...|...+|+..|++.....+    .+..+.
T Consensus       421 -~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL  496 (857)
T PLN03077        421 -ISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAAL  496 (857)
T ss_pred             -CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHH
Confidence             24567888999999999999999999987543   2223455556678888899999999998763211    111111


Q ss_pred             HHHHHhhCCchHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHH
Q 000742          321 RNMIIAKGTSQERKYLLQQN---------ASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQ  391 (1313)
Q Consensus       321 ~~l~~~~~~~~~a~~~~~~~---------~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~  391 (1313)
                      ... ...+..+.++.+....         ...+.+...|...|++++|.+.+++.          .....+|..+...|.
T Consensus       497 ~a~-~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----------~~d~~s~n~lI~~~~  565 (857)
T PLN03077        497 SAC-ARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----------EKDVVSWNILLTGYV  565 (857)
T ss_pred             HHH-hhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----------CCChhhHHHHHHHHH
Confidence            111 1123333333333322         23356778888889999998777653          335588999999999


Q ss_pred             HhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhHHHHH
Q 000742          392 KLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHM  471 (1313)
Q Consensus       392 ~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~~L~~~~~  471 (1313)
                      +.|+.++|+..|++..+.    + ......++..+-.+|.+.|++++|.++|++..+..   +..+ ....|..|...+.
T Consensus       566 ~~G~~~~A~~lf~~M~~~----g-~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~---gi~P-~~~~y~~lv~~l~  636 (857)
T PLN03077        566 AHGKGSMAVELFNRMVES----G-VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKY---SITP-NLKHYACVVDLLG  636 (857)
T ss_pred             HcCCHHHHHHHHHHHHHc----C-CCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHh---CCCC-chHHHHHHHHHHH
Confidence            999999999999997742    2 22334557777788999999999999999876432   2111 2246666666554


Q ss_pred             HhhcCHHHHHHHHHHH
Q 000742          472 IRFDNIEEARRLQHEI  487 (1313)
Q Consensus       472 ~~~~~~~~a~~~~e~~  487 (1313)
                       +.+..++|.++.+.+
T Consensus       637 -r~G~~~eA~~~~~~m  651 (857)
T PLN03077        637 -RAGKLTEAYNFINKM  651 (857)
T ss_pred             -hCCCHHHHHHHHHHC
Confidence             456677777777765

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.37  E-value=1.6e-09  Score=122.93  Aligned_cols=244  Identities=13%  Similarity=0.070  Sum_probs=145.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhh
Q 000742          168 AHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQG  247 (1313)
Q Consensus       168 ~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~  247 (1313)
                      .+...+..+...|+...|...+.+|.+..+         ..-.+|+.--.+.....+++.|..+|.+|...       ..
T Consensus       586 lwlM~ake~w~agdv~~ar~il~~af~~~p---------nseeiwlaavKle~en~e~eraR~llakar~~-------sg  649 (913)
T KOG0495|consen  586 LWLMYAKEKWKAGDVPAARVILDQAFEANP---------NSEEIWLAAVKLEFENDELERARDLLAKARSI-------SG  649 (913)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHhCC---------CcHHHHHHHHHHhhccccHHHHHHHHHHHhcc-------CC
Confidence            444444455555555555555555554421         12334444444445555555555555555443       23


Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000742          248 EAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAK  327 (1313)
Q Consensus       248 ~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~  327 (1313)
                      ..++|+.-+.+...+++.++|++.++++++.+|.....+.+.++++..++++..|..-|....+..+....+        
T Consensus       650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipL--------  721 (913)
T KOG0495|consen  650 TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPL--------  721 (913)
T ss_pred             cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchH--------
Confidence            456666666667777777777777777777776666555555555555555555555554443333222111        


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 000742          328 GTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSW  407 (1313)
Q Consensus       328 ~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal  407 (1313)
                                     +-.|+......++.-+|...++++.      -..|..+..|...-.+-.+.|+.++|.....+|+
T Consensus       722 ---------------WllLakleEk~~~~~rAR~ildrar------lkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakAL  780 (913)
T KOG0495|consen  722 ---------------WLLLAKLEEKDGQLVRARSILDRAR------LKNPKNALLWLESIRMELRAGNKEQAELLMAKAL  780 (913)
T ss_pred             ---------------HHHHHHHHHHhcchhhHHHHHHHHH------hcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                           1122222223333444444444332      2346666777777788888899999998888888


Q ss_pred             HHHHHhCC------------------------chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh
Q 000742          408 EMYKSIGN------------------------LEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLP  456 (1313)
Q Consensus       408 ~l~~~~~~------------------------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~  456 (1313)
                      +-++..+-                        ......++..+|..+....++++|.+.|++|+++..+.|+.
T Consensus       781 Qecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~  853 (913)
T KOG0495|consen  781 QECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDA  853 (913)
T ss_pred             HhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchH
Confidence            86653321                        12445678889999999999999999999999987776653

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.37  E-value=9.1e-13  Score=142.74  Aligned_cols=283  Identities=19%  Similarity=0.268  Sum_probs=200.9

Q ss_pred             CCCcCEEEecCC-CCChhHHHHHHHHHhcCCCCcEEEeecC-CCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHH
Q 000742          916 FTRLGVLNLSGN-RLTDACGSYLSTILKNCKVLYSLNIENC-SITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITN  993 (1313)
Q Consensus       916 ~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~  993 (1313)
                      ++++++|++.++ .|++.....++   ..|+.|+.|+|..| .||+..++.++   ..+++|++|++|+++.++++++..
T Consensus       163 CpnIehL~l~gc~~iTd~s~~sla---~~C~~l~~l~L~~c~~iT~~~Lk~la---~gC~kL~~lNlSwc~qi~~~gv~~  236 (483)
T KOG4341|consen  163 CPNIEHLALYGCKKITDSSLLSLA---RYCRKLRHLNLHSCSSITDVSLKYLA---EGCRKLKYLNLSWCPQISGNGVQA  236 (483)
T ss_pred             CCchhhhhhhcceeccHHHHHHHH---HhcchhhhhhhcccchhHHHHHHHHH---HhhhhHHHhhhccCchhhcCcchH
Confidence            688888888887 67777443333   46888889999885 67877666665   457889999999998877777666


Q ss_pred             HHHhhccCCccceeecCCCCCChHHHHHHHHHh-hcCCccEEEccC-CCCCCchHHHHHHHHhcCCCcccEEEccCCC-C
Q 000742          994 LLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLA-KTSCLTHLMLGC-TNLGSDGSLQLVESLFSRAQESVKLDLSYCG-L 1070 (1313)
Q Consensus       994 ~~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~-~~~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l 1070 (1313)
                      +..   ++..|+.+.+.+|.  +...+.+..+. .+.-+..+++.. +.++|.++..++.    .+..|+.|+.++|. +
T Consensus       237 ~~r---G~~~l~~~~~kGC~--e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~----~c~~lq~l~~s~~t~~  307 (483)
T KOG4341|consen  237 LQR---GCKELEKLSLKGCL--ELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC----GCHALQVLCYSSCTDI  307 (483)
T ss_pred             Hhc---cchhhhhhhhcccc--cccHHHHHHHhccChHhhccchhhhccccchHHHHHhh----hhhHhhhhcccCCCCC
Confidence            655   55567777777764  22233333222 234466777655 4588888766653    34579999998886 6


Q ss_pred             ChhHHHHHHHHHhcCCCccEEEccCCC-CChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEE
Q 000742         1071 ESTCIHKFTASVSLVHGILELNLGGNP-IMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELN 1149 (1313)
Q Consensus      1071 ~~~~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~ 1149 (1313)
                      ++.....+.   .++.+|+.|-|+.+. +++.|...++....    .|+.|++..|..+.++  .+.+.-.+++.|+.|.
T Consensus       308 ~d~~l~aLg---~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~----~Le~l~~e~~~~~~d~--tL~sls~~C~~lr~ls  378 (483)
T KOG4341|consen  308 TDEVLWALG---QHCHNLQVLELSGCQQFSDRGFTMLGRNCP----HLERLDLEECGLITDG--TLASLSRNCPRLRVLS  378 (483)
T ss_pred             chHHHHHHh---cCCCceEEEeccccchhhhhhhhhhhcCCh----hhhhhcccccceehhh--hHhhhccCCchhccCC
Confidence            666554443   468899999999998 99998888877533    5999999999877665  4555557889999999


Q ss_pred             ccCC-CCChhhhhhhcccccccCCcccccccccccccccccccccccccCCCCcccccccCCccchhhhccccCCCCccc
Q 000742         1150 LADN-ASKELTLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFDNSCTS 1228 (1313)
Q Consensus      1150 Ls~N-~i~~~~~~~~l~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~ 1228 (1313)
                      |+++ .|++.|+..+ .                             .....+..|+++.|++++.+.             
T Consensus       379 lshce~itD~gi~~l-~-----------------------------~~~c~~~~l~~lEL~n~p~i~-------------  415 (483)
T KOG4341|consen  379 LSHCELITDEGIRHL-S-----------------------------SSSCSLEGLEVLELDNCPLIT-------------  415 (483)
T ss_pred             hhhhhhhhhhhhhhh-h-----------------------------hccccccccceeeecCCCCch-------------
Confidence            9988 4788877766 1                             122445677777777777632             


Q ss_pred             ccccCCccchhhHHHHHHHHhccccCceecCCCC-CCCHHHHHHHHHHHhc
Q 000742         1229 SCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNN-GFSTQAVKTLYCAWSS 1278 (1313)
Q Consensus      1229 ~L~~L~Ls~n~l~~~l~~~l~~~~~L~~LdLs~N-~l~~~~~~~l~~~l~~ 1278 (1313)
                                   ...-+.+..|++|+.++|-+. .++.+++..+...+..
T Consensus       416 -------------d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~  453 (483)
T KOG4341|consen  416 -------------DATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPN  453 (483)
T ss_pred             -------------HHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCcc
Confidence                         334466788899999999876 5777888877666544

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=1.4e-09  Score=117.17  Aligned_cols=251  Identities=11%  Similarity=0.037  Sum_probs=195.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000742          163 KEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKI  242 (1313)
Q Consensus       163 p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~  242 (1313)
                      |.....+..+|.+|+..|++++|+..|+++.-+         ++......-..|......|++++-.......+.+.+  
T Consensus       229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~---------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~--  297 (564)
T KOG1174|consen  229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA---------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK--  297 (564)
T ss_pred             CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC---------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh--
Confidence            455778899999999999999999999999887         566677788888899999999988888777777755  


Q ss_pred             chhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742          243 EHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRN  322 (1313)
Q Consensus       243 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~  322 (1313)
                          ..+.-|+--+...+..++++.|+.+-+|+++..+.......+.+.++.+++...+|.-.|..+....+.-..    
T Consensus       298 ----~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~----  369 (564)
T KOG1174|consen  298 ----YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLE----  369 (564)
T ss_pred             ----cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHH----
Confidence                455566777888889999999999999999999988887777788889999999998888877633322222    


Q ss_pred             HHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHH-HHH-HHhhCHHHHH
Q 000742          323 MIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIG-ESY-QKLRKFNKAI  400 (1313)
Q Consensus       323 l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg-~~y-~~~g~~~~A~  400 (1313)
                                         +|.-|...|.+.+.+.+|......+......      .+.++..+| .++ ..-.--++|.
T Consensus       370 -------------------~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~------sA~~LtL~g~~V~~~dp~~rEKAK  424 (564)
T KOG1174|consen  370 -------------------IYRGLFHSYLAQKRFKEANALANWTIRLFQN------SARSLTLFGTLVLFPDPRMREKAK  424 (564)
T ss_pred             -------------------HHHHHHHHHHhhchHHHHHHHHHHHHHHhhc------chhhhhhhcceeeccCchhHHHHH
Confidence                               2556677788888888888777777665533      346666665 333 3334568999


Q ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhHHHH
Q 000742          401 KWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSH  470 (1313)
Q Consensus       401 ~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~~L~~~~  470 (1313)
                      +++++++.+.|      +...+...+|+.+...|.++.++..+++++..+.+.       ..+..||.+.
T Consensus       425 kf~ek~L~~~P------~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-------~LH~~Lgd~~  481 (564)
T KOG1174|consen  425 KFAEKSLKINP------IYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-------NLHNHLGDIM  481 (564)
T ss_pred             HHHHhhhccCC------ccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-------HHHHHHHHHH
Confidence            99999997754      666778889999999999999999999999886442       2455566554

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.34  E-value=6e-09  Score=110.04  Aligned_cols=386  Identities=14%  Similarity=0.061  Sum_probs=229.9

Q ss_pred             hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChH
Q 000742            6 MQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFK   85 (1313)
Q Consensus         6 ~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~   85 (1313)
                      ++|..|+..++-....+... +-..-.++|.+|+..|+|++|+..|.-+.+..      ...++...++|.+++.+|.|.
T Consensus        36 rDytGAislLefk~~~~~EE-E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~------~~~~el~vnLAcc~FyLg~Y~  108 (557)
T KOG3785|consen   36 RDYTGAISLLEFKLNLDREE-EDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD------DAPAELGVNLACCKFYLGQYI  108 (557)
T ss_pred             ccchhHHHHHHHhhccchhh-hHHHHHHHHHHHHhhccHHHHHHHHHHHhccC------CCCcccchhHHHHHHHHHHHH
Confidence            56788888888877554433 33456689999999999999999998775522      223678889999999999999


Q ss_pred             HHHHHHHHHH----------HHHHHHhcCHHHHHHHHHHHHH----------HHHHHhccCCcchhhHHHHHHHHHHHHH
Q 000742           86 DALIYQVKKH----------LELAKDASDLVEQQRACTQLGR----------TYYEMFLRSDDDHYSIRNAKKYFKSAMK  145 (1313)
Q Consensus        86 ~A~~~~~~ka----------l~l~~~~~~~~~~a~a~~~lg~----------~y~~l~~~~~~~~~~~~~A~~~~~~Al~  145 (1313)
                      +|.... .++          ..++.+.++.......+..++.          +++..        ..|++|++.|++.+.
T Consensus       109 eA~~~~-~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR--------~HYQeAIdvYkrvL~  179 (557)
T KOG3785|consen  109 EAKSIA-EKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMR--------MHYQEAIDVYKRVLQ  179 (557)
T ss_pred             HHHHHH-hhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHH--------HHHHHHHHHHHHHHh
Confidence            998776 443          2233444444433333333333          33322        445555555555554


Q ss_pred             HHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHc--C
Q 000742          146 LAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMEL--R  223 (1313)
Q Consensus       146 l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~--g  223 (1313)
                      -               .|.+...-.++|.+|+++.-|+-+.+.+.-.+...+.         ...+....+...++.  |
T Consensus       180 d---------------n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd---------StiA~NLkacn~fRl~ng  235 (557)
T KOG3785|consen  180 D---------------NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD---------STIAKNLKACNLFRLING  235 (557)
T ss_pred             c---------------ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC---------cHHHHHHHHHHHhhhhcc
Confidence            3               3467778888999999999999998888877776433         233444444333332  2


Q ss_pred             CHH----------------HHHHHHH----------HHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 000742          224 MWD----------------KSREHIE----------QDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALN  277 (1313)
Q Consensus       224 ~~~----------------~A~~~~~----------kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~  277 (1313)
                      +..                .+...++          -|++..|..-  ...+.+..++...|.++++.++|+...+   +
T Consensus       236 r~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~--~~IPEARlNL~iYyL~q~dVqeA~~L~K---d  310 (557)
T KOG3785|consen  236 RTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLM--KHIPEARLNLIIYYLNQNDVQEAISLCK---D  310 (557)
T ss_pred             chhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHH--hhChHhhhhheeeecccccHHHHHHHHh---h
Confidence            221                1111111          1222222111  2345678889999999999999987765   3


Q ss_pred             HHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742          278 LAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWL  357 (1313)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~  357 (1313)
                      +.|..+..+...+.++..+|+-.-..+.+.-+...++..-.    .+....+...          -..++.......+++
T Consensus       311 l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~----Sa~ecDTIpG----------RQsmAs~fFL~~qFd  376 (557)
T KOG3785|consen  311 LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGE----SALECDTIPG----------RQSMASYFFLSFQFD  376 (557)
T ss_pred             cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcc----cccccccccc----------hHHHHHHHHHHHHHH
Confidence            55555555555555555666543333333333222221110    0000111000          112233344556777


Q ss_pred             HHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHH
Q 000742          358 KHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWA  437 (1313)
Q Consensus       358 ~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~  437 (1313)
                      +.+-|......++-...      ...+++|+++...|+|.+|.+.|-+.-...     ......-...+|.+|...|+++
T Consensus       377 dVl~YlnSi~sYF~NdD------~Fn~N~AQAk~atgny~eaEelf~~is~~~-----ikn~~~Y~s~LArCyi~nkkP~  445 (557)
T KOG3785|consen  377 DVLTYLNSIESYFTNDD------DFNLNLAQAKLATGNYVEAEELFIRISGPE-----IKNKILYKSMLARCYIRNKKPQ  445 (557)
T ss_pred             HHHHHHHHHHHHhcCcc------hhhhHHHHHHHHhcChHHHHHHHhhhcChh-----hhhhHHHHHHHHHHHHhcCCch
Confidence            77777766655553322      677889999999999999998886543111     1123334567999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHhhHH
Q 000742          438 GALDAFQEGYRIAVEANLPSVQLSALENMHY  468 (1313)
Q Consensus       438 ~A~~~~~kAl~i~~~~~~~~~~~~al~~L~~  468 (1313)
                      -|-..|-+       .+.+...-..+.-++.
T Consensus       446 lAW~~~lk-------~~t~~e~fsLLqlIAn  469 (557)
T KOG3785|consen  446 LAWDMMLK-------TNTPSERFSLLQLIAN  469 (557)
T ss_pred             HHHHHHHh-------cCCchhHHHHHHHHHH
Confidence            88776644       3444433444444444

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.32  E-value=2.2e-08  Score=116.08  Aligned_cols=149  Identities=19%  Similarity=0.225  Sum_probs=94.8

Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHH
Q 000742           12 KRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQ   91 (1313)
Q Consensus        12 ~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~   91 (1313)
                      .+++++|++.++ +.++    ..|.+....|..++|+..|++.-...              .+-..|...|.+++|.+..
T Consensus       789 aRAlR~a~q~~~-e~ea----kvAvLAieLgMlEeA~~lYr~ckR~D--------------LlNKlyQs~g~w~eA~eiA  849 (1416)
T KOG3617|consen  789 ARALRRAQQNGE-EDEA----KVAVLAIELGMLEEALILYRQCKRYD--------------LLNKLYQSQGMWSEAFEIA  849 (1416)
T ss_pred             HHHHHHHHhCCc-chhh----HHHHHHHHHhhHHHHHHHHHHHHHHH--------------HHHHHHHhcccHHHHHHHH
Confidence            345566666544 4444    44666778889999999998864433              4566788888888887766


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHH----HHHHHHhccCCCCCc-chhhHHHH
Q 000742           92 VKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSA----MKLAQTLKENPATSR-SSFLKEYI  166 (1313)
Q Consensus        92 ~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~A----l~l~~~~~~~~~~~~-~~~~p~~~  166 (1313)
                       +.        .|....-..|++.|..+...        ++.+.|++||+++    .++.+-+.+.++..+ ..-.....
T Consensus       850 -E~--------~DRiHLr~Tyy~yA~~Lear--------~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~  912 (1416)
T KOG3617|consen  850 -ET--------KDRIHLRNTYYNYAKYLEAR--------RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDE  912 (1416)
T ss_pred             -hh--------ccceehhhhHHHHHHHHHhh--------ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccch
Confidence             32        33333445678888877766        8899999999985    233332322221100 00000113


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhHh
Q 000742          167 DAHNNIGMLQMELDNLEEAKKFLIRGLEIC  196 (1313)
Q Consensus       167 ~~~~~la~~y~~~g~~~~A~~~~~~al~~~  196 (1313)
                      ..|...|......|+.+.|+.+|..|-..+
T Consensus       913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~f  942 (1416)
T KOG3617|consen  913 SLYSWWGQYLESVGEMDAALSFYSSAKDYF  942 (1416)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHhhhhh
Confidence            466677888888899999998888876553

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.30  E-value=1.8e-10  Score=126.56  Aligned_cols=194  Identities=13%  Similarity=0.059  Sum_probs=150.0

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000742          163 KEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKI  242 (1313)
Q Consensus       163 p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~  242 (1313)
                      +..+..++.+|..+...|++++|+..|++++...+.      .+....+++.+|.+|...|++++|+..|+++++..+. 
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-  102 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPF------SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-  102 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-
Confidence            456789999999999999999999999999988544      4556678999999999999999999999999998773 


Q ss_pred             chhhhHHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000742          243 EHCQGEAKGYINLGELHYRV--------QKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQ  314 (1313)
Q Consensus       243 ~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~  314 (1313)
                        .+....+++.+|.++...        |++++|++.|++++...|.........    ..++....             
T Consensus       103 --~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~----~~~~~~~~-------------  163 (235)
T TIGR03302       103 --HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK----KRMDYLRN-------------  163 (235)
T ss_pred             --CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH----HHHHHHHH-------------
Confidence              233445788999999876        889999999999988877543221100    00000000             


Q ss_pred             HHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhh
Q 000742          315 NLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLR  394 (1313)
Q Consensus       315 ~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g  394 (1313)
                                                                                     ........+|.+|..+|
T Consensus       164 ---------------------------------------------------------------~~~~~~~~~a~~~~~~g  180 (235)
T TIGR03302       164 ---------------------------------------------------------------RLAGKELYVARFYLKRG  180 (235)
T ss_pred             ---------------------------------------------------------------HHHHHHHHHHHHHHHcC
Confidence                                                                           00122346888999999


Q ss_pred             CHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000742          395 KFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYR  448 (1313)
Q Consensus       395 ~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~  448 (1313)
                      ++.+|+..|+++++..+.   .+....+++.+|.+|...|++++|..+++....
T Consensus       181 ~~~~A~~~~~~al~~~p~---~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~  231 (235)
T TIGR03302       181 AYVAAINRFETVVENYPD---TPATEEALARLVEAYLKLGLKDLAQDAAAVLGA  231 (235)
T ss_pred             ChHHHHHHHHHHHHHCCC---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            999999999999977542   345678899999999999999999998876543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.29  E-value=1.2e-09  Score=129.15  Aligned_cols=291  Identities=10%  Similarity=0.018  Sum_probs=195.8

Q ss_pred             hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh
Q 000742            5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF   84 (1313)
Q Consensus         5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~   84 (1313)
                      .|++++|.+.+.++.+..+.+...  +...+.+....|++++|..+|.++.+..++    . ........+.++...|++
T Consensus        97 eGd~~~A~k~l~~~~~~~~~p~l~--~llaA~aA~~~g~~~~A~~~l~~A~~~~~~----~-~~~~~l~~a~l~l~~g~~  169 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQPVVN--YLLAAEAAQQRGDEARANQHLERAAELADN----D-QLPVEITRVRIQLARNEN  169 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccchHHH--HHHHHHHHHHCCCHHHHHHHHHHHHhcCCc----c-hHHHHHHHHHHHHHCCCH
Confidence            588999998888876665443333  445577779999999999999999865422    1 122333458999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHH
Q 000742           85 KDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKE  164 (1313)
Q Consensus        85 ~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~  164 (1313)
                      ++|+..+ +++.+..|+..      .++..++.+|...        |++++|+..+.+..+....    .       .+.
T Consensus       170 ~~Al~~l-~~~~~~~P~~~------~al~ll~~~~~~~--------gdw~~a~~~l~~l~k~~~~----~-------~~~  223 (398)
T PRK10747        170 HAARHGV-DKLLEVAPRHP------EVLRLAEQAYIRT--------GAWSSLLDILPSMAKAHVG----D-------EEH  223 (398)
T ss_pred             HHHHHHH-HHHHhcCCCCH------HHHHHHHHHHHHH--------HhHHHHHHHHHHHHHcCCC----C-------HHH
Confidence            9999999 99999887765      4678889999988        9999999888887655210    0       001


Q ss_pred             HH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742          165 YI----DAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK  240 (1313)
Q Consensus       165 ~~----~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~  240 (1313)
                      ..    .++..+........+-    +.+.+..+..++.     .+....+...+|..+...|+.++|.+.++++++..+
T Consensus       224 ~~~l~~~a~~~l~~~~~~~~~~----~~l~~~w~~lp~~-----~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~  294 (398)
T PRK10747        224 RAMLEQQAWIGLMDQAMADQGS----EGLKRWWKNQSRK-----TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY  294 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCH----HHHHHHHHhCCHH-----HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            11    2333322222222222    3333333322221     233567888899999999999999999999987321


Q ss_pred             HhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742          241 KIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLT  320 (1313)
Q Consensus       241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~  320 (1313)
                             ........+.  ...+++++|++.+++.++..|+......                                 
T Consensus       295 -------~~~l~~l~~~--l~~~~~~~al~~~e~~lk~~P~~~~l~l---------------------------------  332 (398)
T PRK10747        295 -------DERLVLLIPR--LKTNNPEQLEKVLRQQIKQHGDTPLLWS---------------------------------  332 (398)
T ss_pred             -------CHHHHHHHhh--ccCCChHHHHHHHHHHHhhCCCCHHHHH---------------------------------
Confidence                   1122222222  2448999999999988877765443222                                 


Q ss_pred             HHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHH
Q 000742          321 RNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAI  400 (1313)
Q Consensus       321 ~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~  400 (1313)
                                              .+|..+...++|.+|.+++++++...      |. ...+..++.++.++|+.++|.
T Consensus       333 ------------------------~lgrl~~~~~~~~~A~~~le~al~~~------P~-~~~~~~La~~~~~~g~~~~A~  381 (398)
T PRK10747        333 ------------------------TLGQLLMKHGEWQEASLAFRAALKQR------PD-AYDYAWLADALDRLHKPEEAA  381 (398)
T ss_pred             ------------------------HHHHHHHHCCCHHHHHHHHHHHHhcC------CC-HHHHHHHHHHHHHcCCHHHHH
Confidence                                    23334455666777777777776542      22 245677999999999999999


Q ss_pred             HHHHHHHHHH
Q 000742          401 KWYTKSWEMY  410 (1313)
Q Consensus       401 ~~~~kal~l~  410 (1313)
                      .+|++++.+.
T Consensus       382 ~~~~~~l~~~  391 (398)
T PRK10747        382 AMRRDGLMLT  391 (398)
T ss_pred             HHHHHHHhhh
Confidence            9999999765

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.29  E-value=1.2e-09  Score=128.53  Aligned_cols=323  Identities=12%  Similarity=-0.057  Sum_probs=203.1

Q ss_pred             hhHHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh
Q 000742            6 MQMSEAKRAYRSAKEEGNRQ-EEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF   84 (1313)
Q Consensus         6 ~~~~~A~~~l~~a~~~~~~~-~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~   84 (1313)
                      ++.+.|.+.+.++.+..+.. ......+..|..+...|++++|.+.++++++..+..      ..++.. +..+...|++
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~------~~a~~~-~~~~~~~~~~   92 (355)
T cd05804          20 GERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRD------LLALKL-HLGAFGLGDF   92 (355)
T ss_pred             CCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc------HHHHHH-hHHHHHhccc
Confidence            44566666666666554422 222336678999999999999999999999876322      344444 6667777766


Q ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHH
Q 000742           85 KDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKE  164 (1313)
Q Consensus        85 ~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~  164 (1313)
                      ..+...+ .+++..  ..+.......++..+|.++...        |++++|+..+++++++.               |.
T Consensus        93 ~~~~~~~-~~~l~~--~~~~~~~~~~~~~~~a~~~~~~--------G~~~~A~~~~~~al~~~---------------p~  146 (355)
T cd05804          93 SGMRDHV-ARVLPL--WAPENPDYWYLLGMLAFGLEEA--------GQYDRAEEAARRALELN---------------PD  146 (355)
T ss_pred             ccCchhH-HHHHhc--cCcCCCCcHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhhC---------------CC
Confidence            6666666 666654  2222233345667888899877        99999999999999982               23


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhch
Q 000742          165 YIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEH  244 (1313)
Q Consensus       165 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~  244 (1313)
                      .+.++..+|.+|+..|++++|+.++++++...+.     ........+..+|.+|...|++++|+..|++++...+..  
T Consensus       147 ~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~-----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~--  219 (355)
T cd05804         147 DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC-----SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAES--  219 (355)
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC-----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCC--
Confidence            4678999999999999999999999999987543     123345678899999999999999999999986543210  


Q ss_pred             hhhHHHHHH--HHHHHHHHhcCHHHHHHHHHHHHHHHHHc-cChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742          245 CQGEAKGYI--NLGELHYRVQKYDEAILCYQKALNLAQSM-EDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTR  321 (1313)
Q Consensus       245 ~~~~~~~~~--~la~~~~~~g~~~~A~~~~~kal~~~~~~-~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~  321 (1313)
                       ......+.  .+...+...|....+..+ +.+....... ........    .+                         
T Consensus       220 -~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~----~~-------------------------  268 (355)
T cd05804         220 -DPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFN----DL-------------------------  268 (355)
T ss_pred             -ChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHH----HH-------------------------
Confidence             11111101  112222233332222222 2222221111 11000000    00                         


Q ss_pred             HHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCchhhHHHHHHHHHHHHHhhCHHH
Q 000742          322 NMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASE---LCDKGKLSDSFLVIGESYQKLRKFNK  398 (1313)
Q Consensus       322 ~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~---~~~~~~~a~~~~~lg~~y~~~g~~~~  398 (1313)
                                             ..+......++++.|....+........   .........+....|.++...|++++
T Consensus       269 -----------------------~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~  325 (355)
T cd05804         269 -----------------------HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYAT  325 (355)
T ss_pred             -----------------------HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHH
Confidence                                   0111122233344455555554444443   23333455777888999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCchhHHHH
Q 000742          399 AIKWYTKSWEMYKSIGNLEGQALA  422 (1313)
Q Consensus       399 A~~~~~kal~l~~~~~~~~~~~~~  422 (1313)
                      |+..+..++.+...+++..-+-.+
T Consensus       326 A~~~L~~al~~a~~~ggs~aq~~~  349 (355)
T cd05804         326 ALELLGPVRDDLARIGGSHAQRDV  349 (355)
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHH
Confidence            999999999999888876444433

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.28  E-value=3.7e-10  Score=126.64  Aligned_cols=234  Identities=15%  Similarity=0.119  Sum_probs=177.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcC
Q 000742           25 QEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASD  104 (1313)
Q Consensus        25 ~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~  104 (1313)
                      ...+..|...|..|...|++++|.+.|.++.+...+.......+..|...+.+|... ++++|+.++ ++|++++...+.
T Consensus        32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~-~~A~~~y~~~G~  109 (282)
T PF14938_consen   32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECY-EKAIEIYREAGR  109 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHH-HHHHHHHHHCT-
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHH-HHHHHHHHhcCc
Confidence            344677889999999999999999999999999988766666788888888888766 999999999 999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHH
Q 000742          105 LVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEE  184 (1313)
Q Consensus       105 ~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~  184 (1313)
                      ....+.++..+|.+|...       .+++++|+++|++|+++++..+..         ......+..+|.++...|+|++
T Consensus       110 ~~~aA~~~~~lA~~ye~~-------~~d~e~Ai~~Y~~A~~~y~~e~~~---------~~a~~~~~~~A~l~~~l~~y~~  173 (282)
T PF14938_consen  110 FSQAAKCLKELAEIYEEQ-------LGDYEKAIEYYQKAAELYEQEGSP---------HSAAECLLKAADLYARLGRYEE  173 (282)
T ss_dssp             HHHHHHHHHHHHHHHCCT-------T--HHHHHHHHHHHHHHHHHTT-H---------HHHHHHHHHHHHHHHHTT-HHH
T ss_pred             HHHHHHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHHHHCCCh---------hhHHHHHHHHHHHHHHhCCHHH
Confidence            999999999999999632       179999999999999999877643         2567889999999999999999


Q ss_pred             HHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH--h
Q 000742          185 AKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYR--V  262 (1313)
Q Consensus       185 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~--~  262 (1313)
                      |++.|++......+.  ..........+...+.+++..|++..|...+++.....+...+. ........+-.++..  .
T Consensus       174 A~~~~e~~~~~~l~~--~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s-~E~~~~~~l~~A~~~~D~  250 (282)
T PF14938_consen  174 AIEIYEEVAKKCLEN--NLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS-REYKFLEDLLEAYEEGDV  250 (282)
T ss_dssp             HHHHHHHHHHTCCCH--CTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS-HHHHHHHHHHHHHHTT-C
T ss_pred             HHHHHHHHHHHhhcc--cccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc-HHHHHHHHHHHHHHhCCH
Confidence            999999998765432  11223344566788999999999999999999988776644332 334455566565543  3


Q ss_pred             cCHHHHHHHHHHHHHHH
Q 000742          263 QKYDEAILCYQKALNLA  279 (1313)
Q Consensus       263 g~~~~A~~~~~kal~~~  279 (1313)
                      ..+++|+.-|...-+++
T Consensus       251 e~f~~av~~~d~~~~ld  267 (282)
T PF14938_consen  251 EAFTEAVAEYDSISRLD  267 (282)
T ss_dssp             CCHHHHCHHHTTSS---
T ss_pred             HHHHHHHHHHcccCccH
Confidence            45666666666555444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=1.2e-11  Score=127.71  Aligned_cols=162  Identities=27%  Similarity=0.275  Sum_probs=91.2

Q ss_pred             CCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHHH
Q 000742          917 TRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLV  996 (1313)
Q Consensus       917 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~  996 (1313)
                      +.|++||||+..|+..   .+..+|+.|..|+.|.|.++.+.+    .++..+..+.+|+.|+|+.+.-++..+...++.
T Consensus       185 sRlq~lDLS~s~it~s---tl~~iLs~C~kLk~lSlEg~~LdD----~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~  257 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVS---TLHGILSQCSKLKNLSLEGLRLDD----PIVNTIAKNSNLVRLNLSMCSGFTENALQLLLS  257 (419)
T ss_pred             hhhHHhhcchhheeHH---HHHHHHHHHHhhhhccccccccCc----HHHHHHhccccceeeccccccccchhHHHHHHH
Confidence            3577777777777755   355566777777777777777776    444445567777777777776555555444433


Q ss_pred             hhccCCccceeecCCCCCChHHHHHHHHHhhcCCccEEEccCCC--CCCchHHHHHHHHhcCCCcccEEEccCCC-CChh
Q 000742          997 KLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTN--LGSDGSLQLVESLFSRAQESVKLDLSYCG-LEST 1073 (1313)
Q Consensus       997 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~--i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~ 1073 (1313)
                         +|+.|.+|+|+.|.++.+.+..+..-. ..+|+.|+|+++.  +.+..+.    .+...++.|.+||||+|. |++.
T Consensus       258 ---scs~L~~LNlsWc~l~~~~Vtv~V~hi-se~l~~LNlsG~rrnl~~sh~~----tL~~rcp~l~~LDLSD~v~l~~~  329 (419)
T KOG2120|consen  258 ---SCSRLDELNLSWCFLFTEKVTVAVAHI-SETLTQLNLSGYRRNLQKSHLS----TLVRRCPNLVHLDLSDSVMLKND  329 (419)
T ss_pred             ---hhhhHhhcCchHhhccchhhhHHHhhh-chhhhhhhhhhhHhhhhhhHHH----HHHHhCCceeeeccccccccCch
Confidence               666777777777776555443332211 2346666666542  2222211    122334555555555554 3332


Q ss_pred             HHHHHHHHHhcCCCccEEEccCCC
Q 000742         1074 CIHKFTASVSLVHGILELNLGGNP 1097 (1313)
Q Consensus      1074 ~~~~l~~~l~~~~~L~~L~Ls~N~ 1097 (1313)
                          ....+..++.|++|.|+.|.
T Consensus       330 ----~~~~~~kf~~L~~lSlsRCY  349 (419)
T KOG2120|consen  330 ----CFQEFFKFNYLQHLSLSRCY  349 (419)
T ss_pred             ----HHHHHHhcchheeeehhhhc
Confidence                12223345555555555554

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.25  E-value=4.3e-08  Score=112.42  Aligned_cols=378  Identities=14%  Similarity=0.122  Sum_probs=246.8

Q ss_pred             hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChH
Q 000742            6 MQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFK   85 (1313)
Q Consensus         6 ~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~   85 (1313)
                      |+-++|....+.+++.+......  |+.+|.++....+|++|+++|+.|+.+.+.      ...++..++.....+++|+
T Consensus        55 g~~~ea~~~vr~glr~d~~S~vC--wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d------N~qilrDlslLQ~QmRd~~  126 (700)
T KOG1156|consen   55 GKKEEAYELVRLGLRNDLKSHVC--WHVLGLLQRSDKKYDEAIKCYRNALKIEKD------NLQILRDLSLLQIQMRDYE  126 (700)
T ss_pred             cchHHHHHHHHHHhccCcccchh--HHHHHHHHhhhhhHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHHHhhh
Confidence            56678888888888877776666  999999999999999999999999988743      3789999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHH
Q 000742           86 DALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEY  165 (1313)
Q Consensus        86 ~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~  165 (1313)
                      -....- .+.+++.+...      ..|...+..+.-.        |++..|....+.-.+......+       ...-..
T Consensus       127 ~~~~tr-~~LLql~~~~r------a~w~~~Avs~~L~--------g~y~~A~~il~ef~~t~~~~~s-------~~~~e~  184 (700)
T KOG1156|consen  127 GYLETR-NQLLQLRPSQR------ASWIGFAVAQHLL--------GEYKMALEILEEFEKTQNTSPS-------KEDYEH  184 (700)
T ss_pred             hHHHHH-HHHHHhhhhhH------HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhccCCC-------HHHHHH
Confidence            988887 88888776543      4577888888877        8999998888776665431111       112355


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchh
Q 000742          166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHC  245 (1313)
Q Consensus       166 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~  245 (1313)
                      ..+......+....|.+++|++.+.+--.-         ...........|.++..++++++|...|...+...|     
T Consensus       185 se~~Ly~n~i~~E~g~~q~ale~L~~~e~~---------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnP-----  250 (700)
T KOG1156|consen  185 SELLLYQNQILIEAGSLQKALEHLLDNEKQ---------IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNP-----  250 (700)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHhhhhH---------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCc-----
Confidence            667777788888899988888877664332         222345567789999999999999999999998877     


Q ss_pred             hhHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHH-------------HHHHHHH
Q 000742          246 QGEAKGYINLGELHYRVQKYDEAI-LCYQKALNLAQSMEDEDALASQIDQNIETVKKAIE-------------VMDELKK  311 (1313)
Q Consensus       246 ~~~~~~~~~la~~~~~~g~~~~A~-~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~-------------~~~~a~~  311 (1313)
                       +....|..+-.++..-.+--+++ ..|...-+..+...-....--.+... ......+.             .+.....
T Consensus       251 -dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~-eel~~~vdkyL~~~l~Kg~p~vf~dl~S  328 (700)
T KOG1156|consen  251 -DNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNG-EELKEIVDKYLRPLLSKGVPSVFKDLRS  328 (700)
T ss_pred             -hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCc-chhHHHHHHHHHHHhhcCCCchhhhhHH
Confidence             55555555555554222222333 33333332222221111000000000 00000000             0111111


Q ss_pred             HHH------HHHHHHHHHHH----h-------hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 000742          312 EEQ------NLKKLTRNMII----A-------KGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELC  374 (1313)
Q Consensus       312 ~~~------~~~~l~~~l~~----~-------~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~  374 (1313)
                      .++      -+..+...+..    .       .+..+.+   ....+++..++..+...++++.|..|...|+.      
T Consensus       329 Lyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~P---ttllWt~y~laqh~D~~g~~~~A~~yId~AId------  399 (700)
T KOG1156|consen  329 LYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPP---TTLLWTLYFLAQHYDKLGDYEVALEYIDLAID------  399 (700)
T ss_pred             HHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCc---hHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc------
Confidence            110      01111111110    0       0111111   12235567778888889999999998887754      


Q ss_pred             CchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHH-HHHHHHHHcCCHHHHHHHHHH
Q 000742          375 DKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKV-NMGNVLDSNGDWAGALDAFQE  445 (1313)
Q Consensus       375 ~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~-~lg~~y~~~g~~~~A~~~~~k  445 (1313)
                      .-|...+.|...|+++...|+.++|..++..|-+++..       ..+.. .-|......++.++|.+...+
T Consensus       400 HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a-------DR~INsKcAKYmLrAn~i~eA~~~~sk  464 (700)
T KOG1156|consen  400 HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA-------DRAINSKCAKYMLRANEIEEAEEVLSK  464 (700)
T ss_pred             cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch-------hHHHHHHHHHHHHHccccHHHHHHHHH
Confidence            55777799999999999999999999999999987541       11222 467777888899988876554

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.24  E-value=2.6e-10  Score=125.28  Aligned_cols=114  Identities=18%  Similarity=0.180  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCH
Q 000742           26 EEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDL  105 (1313)
Q Consensus        26 ~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~  105 (1313)
                      ..+..++.+|..++..|++++|+..|++++...+..   +....+++.+|.+|...|++++|+..+ +++++..|+....
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~a~~~la~~~~~~~~~~~A~~~~-~~~l~~~p~~~~~  106 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS---PYAEQAQLDLAYAYYKSGDYAEAIAAA-DRFIRLHPNHPDA  106 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---hhHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHCcCCCch
Confidence            345569999999999999999999999998876422   333578899999999999999999999 9999998876653


Q ss_pred             HHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHH
Q 000742          106 VEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKL  146 (1313)
Q Consensus       106 ~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l  146 (1313)
                         ..+++.+|.+|...........+++++|+..|++++..
T Consensus       107 ---~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  144 (235)
T TIGR03302       107 ---DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR  144 (235)
T ss_pred             ---HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence               24688899998764222223447899999999999876

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.23  E-value=1.6e-06  Score=96.12  Aligned_cols=441  Identities=13%  Similarity=0.014  Sum_probs=282.7

Q ss_pred             hHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHhhCCC-CCchhHHHHHHHHHHHcc-
Q 000742            7 QMSEAKRAYRSAKEEGNR-QEEARWANVIGDIL-KNRGEYVEALKWFRIDYDVSVKYLPE-KHLLPTCQSLGEVYLRLE-   82 (1313)
Q Consensus         7 ~~~~A~~~l~~a~~~~~~-~~~a~~~~~lg~~y-~~~g~~~eAl~~~~~al~~~~~~~~~-~~~~~~~~~lg~~y~~~g-   82 (1313)
                      ++..+++.++......+. ..+|+....+|.++ ....+++.|...+++|+.+......- .....++..++.+|.... 
T Consensus        24 kIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~  103 (629)
T KOG2300|consen   24 KIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQ  103 (629)
T ss_pred             hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcC
Confidence            567788887777665544 56788888998776 56789999999999999998766433 234678889999998887 


Q ss_pred             ChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHH---------------------
Q 000742           83 HFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFK---------------------  141 (1313)
Q Consensus        83 ~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~---------------------  141 (1313)
                      .+..|...+ ++|+++....+.  .-.+..+.++.++.-.        .++..|++.+.                     
T Consensus       104 s~~~~KalL-rkaielsq~~p~--wsckllfQLaql~~id--------kD~~sA~elLavga~sAd~~~~~ylr~~ftls  172 (629)
T KOG2300|consen  104 SFPPAKALL-RKAIELSQSVPY--WSCKLLFQLAQLHIID--------KDFPSALELLAVGAESADHICFPYLRMLFTLS  172 (629)
T ss_pred             CCchHHHHH-HHHHHHhcCCch--hhHHHHHHHHHHHhhh--------ccchhHHHHHhccccccchhhhHHHHHHHHHH
Confidence            888999999 999999887763  3455666777776644        55555544421                     


Q ss_pred             ---------------HHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhHhhhhcc----
Q 000742          142 ---------------SAMKLAQTLKENPATSRSSFLKEYIDAHNNIGML-QMELDNLEEAKKFLIRGLEICNEEEV----  201 (1313)
Q Consensus       142 ---------------~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~-y~~~g~~~~A~~~~~~al~~~~~~~~----  201 (1313)
                                     +++..+..+.+.....+. .....-..|..+-.. |...|+...+...+++.-.-......    
T Consensus       173 ~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~-~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~  251 (629)
T KOG2300|consen  173 MLMLLIMERDDYDVEKLLQRCGQIWQNISSDKT-QKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRG  251 (629)
T ss_pred             HHHHHHhCccHHHHHHHHHHHHHHHhccCCChH-HHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCC
Confidence                           122223333222211110 011112223333333 44556665555544433222111100    


Q ss_pred             ------CCCchH--------HHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHHhchhhh--------HHHHHHHHHH
Q 000742          202 ------SEDDDG--------RSRLHHNLGNV--YMELRMWDKSREHIEQDIIICKKIEHCQG--------EAKGYINLGE  257 (1313)
Q Consensus       202 ------~~~~~~--------~~~~~~~lg~~--y~~~g~~~~A~~~~~kal~~~~~~~~~~~--------~~~~~~~la~  257 (1313)
                            +...+.        ...++..+-.+  -...|-+++|.+|-++++...++....+.        ....+.++..
T Consensus       252 h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~  331 (629)
T KOG2300|consen  252 HDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVM  331 (629)
T ss_pred             ccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHH
Confidence                  011111        11112222111  13457789999999999998776643332        2334556677


Q ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHccChh---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHH
Q 000742          258 LHYRVQKYDEAILCYQKALNLAQSMEDED---ALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERK  334 (1313)
Q Consensus       258 ~~~~~g~~~~A~~~~~kal~~~~~~~~~~---~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~  334 (1313)
                      +-.-.|++.+|++....+.+.....+.+.   ....+++.-+|.+.-....|+.|...+....++......         
T Consensus       332 c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl---------  402 (629)
T KOG2300|consen  332 CRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDL---------  402 (629)
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHH---------
Confidence            77788999999999999999988877632   334567888888888888888887666655554332221         


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Q 000742          335 YLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASEL----CDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMY  410 (1313)
Q Consensus       335 ~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~----~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~  410 (1313)
                          ++..--+++..|...++   +.++++....+....    ......+.+++..|-..+.++++.+|...+.+.+++.
T Consensus       403 ----~a~~nlnlAi~YL~~~~---~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  403 ----QAFCNLNLAISYLRIGD---AEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             ----HHHHHHhHHHHHHHhcc---HHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence                22223345555544332   333333332222211    1122357788888999999999999999999999988


Q ss_pred             HHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhHHHHHHhhc
Q 000742          411 KSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFD  475 (1313)
Q Consensus       411 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~~L~~~~~~~~~  475 (1313)
                      ...+...-.+..+..+|.+....|+..++.+...-++.++++..+...+.-...-+-..|...++
T Consensus       476 naed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~  540 (629)
T KOG2300|consen  476 NAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGE  540 (629)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCc
Confidence            54444445566788899999999999999999999999999998888777666666666655555

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.23  E-value=9.3e-10  Score=123.44  Aligned_cols=229  Identities=17%  Similarity=0.156  Sum_probs=168.9

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccCh
Q 000742          206 DGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDE  285 (1313)
Q Consensus       206 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~  285 (1313)
                      ..-+..|...|..|...|++++|.+.|.++.....+.++....+..|...+.+|.+. ++++|+.+|++|+.+....+..
T Consensus        32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~  110 (282)
T PF14938_consen   32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRF  110 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-H
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcH
Confidence            345777888899999999999999999999999999888888999999999998776 9999999999999998766543


Q ss_pred             hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 000742          286 DALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMI-FAWLKHCEYAK  364 (1313)
Q Consensus       286 ~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~-~~~~~A~~~~~  364 (1313)
                      ...                                                   +..+..++..+... +++++|+++|+
T Consensus       111 ~~a---------------------------------------------------A~~~~~lA~~ye~~~~d~e~Ai~~Y~  139 (282)
T PF14938_consen  111 SQA---------------------------------------------------AKCLKELAEIYEEQLGDYEKAIEYYQ  139 (282)
T ss_dssp             HHH---------------------------------------------------HHHHHHHHHHHCCTT--HHHHHHHHH
T ss_pred             HHH---------------------------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            221                                                   22355666677676 88999999999


Q ss_pred             HHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCC-chhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000742          365 RKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGN-LEGQALAKVNMGNVLDSNGDWAGALDAF  443 (1313)
Q Consensus       365 ~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~-~~~~~~~~~~lg~~y~~~g~~~~A~~~~  443 (1313)
                      +|..++...+.......++..+|.++...|+|++|++.|++.......... .......+...+.++...||+..|...+
T Consensus       140 ~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~  219 (282)
T PF14938_consen  140 KAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKAL  219 (282)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999998877788899999999999999999999999998865432222 2334445678889999999999999999


Q ss_pred             HHHHHHHHHcCChhHHHHHHHhhHHHHHH-hhcCHHHHHHHHHHH
Q 000742          444 QEGYRIAVEANLPSVQLSALENMHYSHMI-RFDNIEEARRLQHEI  487 (1313)
Q Consensus       444 ~kAl~i~~~~~~~~~~~~al~~L~~~~~~-~~~~~~~a~~~~e~~  487 (1313)
                      ++............ +...+..|-..+.. ..+.+.++..-+..+
T Consensus       220 ~~~~~~~~~F~~s~-E~~~~~~l~~A~~~~D~e~f~~av~~~d~~  263 (282)
T PF14938_consen  220 ERYCSQDPSFASSR-EYKFLEDLLEAYEEGDVEAFTEAVAEYDSI  263 (282)
T ss_dssp             HHHGTTSTTSTTSH-HHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred             HHHHhhCCCCCCcH-HHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence            98877654444433 34455555554433 334444444444433

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.21  E-value=7.3e-07  Score=98.28  Aligned_cols=354  Identities=10%  Similarity=0.046  Sum_probs=226.0

Q ss_pred             cchhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHcc
Q 000742            3 RDEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLE   82 (1313)
Q Consensus         3 ~~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g   82 (1313)
                      ..++++..|...+++|+..+......  +...+.+-........|...+++|+.+.|..      -..++....+-..+|
T Consensus        84 esq~e~~RARSv~ERALdvd~r~itL--WlkYae~Emknk~vNhARNv~dRAvt~lPRV------dqlWyKY~ymEE~Lg  155 (677)
T KOG1915|consen   84 ESQKEIQRARSVFERALDVDYRNITL--WLKYAEFEMKNKQVNHARNVWDRAVTILPRV------DQLWYKYIYMEEMLG  155 (677)
T ss_pred             HhHHHHHHHHHHHHHHHhcccccchH--HHHHHHHHHhhhhHhHHHHHHHHHHHhcchH------HHHHHHHHHHHHHhc
Confidence            45788899999999999888776555  7788888889999999999999999888543      566777777777889


Q ss_pred             ChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhh
Q 000742           83 HFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFL  162 (1313)
Q Consensus        83 ~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~  162 (1313)
                      +..-|.+.| ++-++..|...       +|...-..-...        ...+.|...|++-+-.       +        
T Consensus       156 Ni~gaRqif-erW~~w~P~eq-------aW~sfI~fElRy--------keieraR~IYerfV~~-------H--------  204 (677)
T KOG1915|consen  156 NIAGARQIF-ERWMEWEPDEQ-------AWLSFIKFELRY--------KEIERARSIYERFVLV-------H--------  204 (677)
T ss_pred             ccHHHHHHH-HHHHcCCCcHH-------HHHHHHHHHHHh--------hHHHHHHHHHHHHhee-------c--------
Confidence            999999999 88888766542       232222222222        4555566555554322       1        


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000742          163 KEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKI  242 (1313)
Q Consensus       163 p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~  242 (1313)
                       -.+..+...|..-...|+..-|...|++|++....      +......+...|..-..++.++.|...|+-|+...++.
T Consensus       205 -P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~------d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~  277 (677)
T KOG1915|consen  205 -PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD------DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKG  277 (677)
T ss_pred             -ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence             11355666666677777777777777777776432      33344455555555566666666666666665544331


Q ss_pred             --------------------------------------chhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccC
Q 000742          243 --------------------------------------EHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMED  284 (1313)
Q Consensus       243 --------------------------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~  284 (1313)
                                                            ...+....+++..-.+-...|+.+.-.+.|++|+.-.|....
T Consensus       278 raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~e  357 (677)
T KOG1915|consen  278 RAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASE  357 (677)
T ss_pred             cHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhH
Confidence                                                  122444566777777777789999999999999987776544


Q ss_pred             hhHHHHHHHH--h--------HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhCCchHHHHHHHHHHHH----
Q 000742          285 EDALASQIDQ--N--------IETVKKAIEVMDELKKEE-------QNLKKLTRNMIIAKGTSQERKYLLQQNASL----  343 (1313)
Q Consensus       285 ~~~~~~~~~~--~--------lg~~~~a~~~~~~a~~~~-------~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l----  343 (1313)
                      .......+|.  +        ..++..+...|+..++..       .++-.++......+.+...|+..+..+...    
T Consensus       358 kr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~  437 (677)
T KOG1915|consen  358 KRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD  437 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch
Confidence            4333322222  1        233444555555544322       233344444555555555555555444322    


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 000742          344 ---DRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWE  408 (1313)
Q Consensus       344 ---~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~  408 (1313)
                         ....+.-....+++....+|++.++..      |....++...|..-..+|+.+.|...|+-|+.
T Consensus       438 KlFk~YIelElqL~efDRcRkLYEkfle~~------Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~  499 (677)
T KOG1915|consen  438 KLFKGYIELELQLREFDRCRKLYEKFLEFS------PENCYAWSKYAELETSLGDTDRARAIFELAIS  499 (677)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence               223334455667777777777766543      55558888888888888888888888887764

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.18  E-value=7.2e-09  Score=107.06  Aligned_cols=221  Identities=14%  Similarity=0.136  Sum_probs=152.8

Q ss_pred             hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh
Q 000742            5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF   84 (1313)
Q Consensus         5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~   84 (1313)
                      ..+|..|++++..-.+..|....+  +..+|.+|+...+|..|...|.+.-...|+.      .......+..++..+.|
T Consensus        23 d~ry~DaI~~l~s~~Er~p~~rAg--LSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~------~qYrlY~AQSLY~A~i~   94 (459)
T KOG4340|consen   23 DARYADAIQLLGSELERSPRSRAG--LSLLGYCYYRLQEFALAAECYEQLGQLHPEL------EQYRLYQAQSLYKACIY   94 (459)
T ss_pred             HhhHHHHHHHHHHHHhcCccchHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhChHH------HHHHHHHHHHHHHhccc
Confidence            457888888888888888876666  7789999999999999999999887776543      55666778888888999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHH
Q 000742           85 KDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKE  164 (1313)
Q Consensus        85 ~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~  164 (1313)
                      ..|+... ....+. +..     ..++...-+.+.+..        +++..+..       +.++....          +
T Consensus        95 ADALrV~-~~~~D~-~~L-----~~~~lqLqaAIkYse--------~Dl~g~rs-------LveQlp~e----------n  142 (459)
T KOG4340|consen   95 ADALRVA-FLLLDN-PAL-----HSRVLQLQAAIKYSE--------GDLPGSRS-------LVEQLPSE----------N  142 (459)
T ss_pred             HHHHHHH-HHhcCC-HHH-----HHHHHHHHHHHhccc--------ccCcchHH-------HHHhccCC----------C
Confidence            8888776 443321 111     111111111221111        22222221       22222211          3


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--
Q 000742          165 YIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKI--  242 (1313)
Q Consensus       165 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~--  242 (1313)
                      .+....+.|-+.++.|+|+.|++-|+.|++..      +..   ..+-+++|.++++.|+++.|+++..+.++..-+.  
T Consensus       143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvs------Gyq---pllAYniALaHy~~~qyasALk~iSEIieRG~r~HP  213 (459)
T KOG4340|consen  143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVS------GYQ---PLLAYNLALAHYSSRQYASALKHISEIIERGIRQHP  213 (459)
T ss_pred             ccchhccchheeeccccHHHHHHHHHHHHhhc------CCC---chhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCC
Confidence            46788999999999999999999999999982      333   3456899999999999999999998888764331  


Q ss_pred             ----------------ch-----hhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 000742          243 ----------------EH-----CQGEAKGYINLGELHYRVQKYDEAILCYQK  274 (1313)
Q Consensus       243 ----------------~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~k  274 (1313)
                                      ++     ......+++..+.++++.++++.|.+.+..
T Consensus       214 ElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD  266 (459)
T KOG4340|consen  214 ELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD  266 (459)
T ss_pred             ccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc
Confidence                            01     123456777888899999999998876653

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.16  E-value=4.9e-08  Score=116.13  Aligned_cols=257  Identities=12%  Similarity=0.058  Sum_probs=144.5

Q ss_pred             chhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHcc-
Q 000742            4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLE-   82 (1313)
Q Consensus         4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g-   82 (1313)
                      +.|++++|++.+......-.+....  +-..|.+|...|++++|...|+..++..+..      ...|..+..+..... 
T Consensus        16 e~g~~~~AL~~L~~~~~~I~Dk~~~--~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn------~~Yy~~L~~~~g~~~~   87 (517)
T PF12569_consen   16 EAGDYEEALEHLEKNEKQILDKLAV--LEKRAELLLKLGRKEEAEKIYRELIDRNPDN------YDYYRGLEEALGLQLQ   87 (517)
T ss_pred             HCCCHHHHHHHHHhhhhhCCCHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHhhhcc
Confidence            3456666666666554444443333  5566666666666666666666666655221      444444444442222 


Q ss_pred             ----ChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHH-HHHHHHHHHHHHHhccCCCCC
Q 000742           83 ----HFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNA-KKYFKSAMKLAQTLKENPATS  157 (1313)
Q Consensus        83 ----~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A-~~~~~~Al~l~~~~~~~~~~~  157 (1313)
                          +.+.-...| ++....+|.....       ..+...+..        ...+... ..|+...+.-           
T Consensus        88 ~~~~~~~~~~~~y-~~l~~~yp~s~~~-------~rl~L~~~~--------g~~F~~~~~~yl~~~l~K-----------  140 (517)
T PF12569_consen   88 LSDEDVEKLLELY-DELAEKYPRSDAP-------RRLPLDFLE--------GDEFKERLDEYLRPQLRK-----------  140 (517)
T ss_pred             cccccHHHHHHHH-HHHHHhCccccch-------hHhhcccCC--------HHHHHHHHHHHHHHHHhc-----------
Confidence                233334444 4333333322111       111111110        0223322 2333333211           


Q ss_pred             cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhh---cc-----CCCchHHHHHHHHHHHHHHHcCCHHHHH
Q 000742          158 RSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEE---EV-----SEDDDGRSRLHHNLGNVYMELRMWDKSR  229 (1313)
Q Consensus       158 ~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~---~~-----~~~~~~~~~~~~~lg~~y~~~g~~~~A~  229 (1313)
                            ..+..+.++-..|....+.+-....+..........   ..     ...+.....+++.+|..|...|++++|+
T Consensus       141 ------gvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al  214 (517)
T PF12569_consen  141 ------GVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKAL  214 (517)
T ss_pred             ------CCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHH
Confidence                  224456666666654433332223333322221110   00     1223344678899999999999999999


Q ss_pred             HHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHH
Q 000742          230 EHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMD  307 (1313)
Q Consensus       230 ~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~  307 (1313)
                      +++++||+..|      .....|...|.+|.+.|++.+|.++++.|..++..........+..+...|.+.+|...+.
T Consensus       215 ~~Id~aI~htP------t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~  286 (517)
T PF12569_consen  215 EYIDKAIEHTP------TLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTAS  286 (517)
T ss_pred             HHHHHHHhcCC------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            99999999865      7889999999999999999999999999999887655444455555556666666555443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.15  E-value=2.4e-07  Score=107.73  Aligned_cols=412  Identities=13%  Similarity=0.088  Sum_probs=227.4

Q ss_pred             hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh
Q 000742            5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF   84 (1313)
Q Consensus         5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~   84 (1313)
                      .|.+++|+.+|++..+          |-.+-..|...|.+++|.+..+        ..+.-++-.+|++.|..+...++.
T Consensus       813 LgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE--------~~DRiHLr~Tyy~yA~~Lear~Di  874 (1416)
T KOG3617|consen  813 LGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAE--------TKDRIHLRNTYYNYAKYLEARRDI  874 (1416)
T ss_pred             HhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHh--------hccceehhhhHHHHHHHHHhhccH
Confidence            4556666666666543          3345566777778877776654        235566778999999999999999


Q ss_pred             HHHHHHHHHHHHHHH----HHhcCHHHHH----------HHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHh
Q 000742           85 KDALIYQVKKHLELA----KDASDLVEQQ----------RACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTL  150 (1313)
Q Consensus        85 ~~A~~~~~~kal~l~----~~~~~~~~~a----------~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~  150 (1313)
                      +.|++|| +++-..+    +-..+.....          ..|...|......        |+.+.|+.+|..|-..+...
T Consensus       875 ~~Aleyy-EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~--------GemdaAl~~Y~~A~D~fs~V  945 (1416)
T KOG3617|consen  875 EAALEYY-EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESV--------GEMDAALSFYSSAKDYFSMV  945 (1416)
T ss_pred             HHHHHHH-HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcc--------cchHHHHHHHHHhhhhhhhe
Confidence            9999999 8763221    1111111111          2233444444433        88999999998876654332


Q ss_pred             ccCCCCCcc------hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------hHhhhhccCCCchHHHH--------
Q 000742          151 KENPATSRS------SFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGL------EICNEEEVSEDDDGRSR--------  210 (1313)
Q Consensus       151 ~~~~~~~~~------~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al------~~~~~~~~~~~~~~~~~--------  210 (1313)
                      .-.--..+.      .-....-.+.+.+|..|...|++.+|+.+|.+|-      .++++.   +.......        
T Consensus       946 rI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEn---d~~d~L~nlal~s~~~ 1022 (1416)
T KOG3617|consen  946 RIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEN---DMKDRLANLALMSGGS 1022 (1416)
T ss_pred             eeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHhhcCch
Confidence            111000000      0000123477889999999999999999988864      445442   11111111        


Q ss_pred             HHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHH------------------hchhhhHHHHHHHHHHHHHHhcCHHHHHHH
Q 000742          211 LHHNLGNVYMELR-MWDKSREHIEQDIIICKK------------------IEHCQGEAKGYINLGELHYRVQKYDEAILC  271 (1313)
Q Consensus       211 ~~~~lg~~y~~~g-~~~~A~~~~~kal~~~~~------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  271 (1313)
                      -....|..|...| ++.+|...|.+|=-+.+.                  --+....+..+..-+..+....+|++|...
T Consensus      1023 d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~l 1102 (1416)
T KOG3617|consen 1023 DLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNL 1102 (1416)
T ss_pred             hHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHH
Confidence            1223456666666 777787777654222211                  112234566777888999999999999887


Q ss_pred             HHHH------HHHHHHccCh-------------------------hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742          272 YQKA------LNLAQSMEDE-------------------------DALASQIDQNIETVKKAIEVMDELKKEEQNLKKLT  320 (1313)
Q Consensus       272 ~~ka------l~~~~~~~~~-------------------------~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~  320 (1313)
                      +-.+      +.+....+-.                         ...++.+....|.|..|.+.|.++.....+...+.
T Consensus      1103 L~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLL 1182 (1416)
T KOG3617|consen 1103 LCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALL 1182 (1416)
T ss_pred             HHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHH
Confidence            6554      4433221100                         01123345556667777777777766555554443


Q ss_pred             HHH---------------------------HHhhCCc---hHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Q 000742          321 RNM---------------------------IIAKGTS---QERKYLLQQNASLDRLIEKSS--------MIFAWLKHCEY  362 (1313)
Q Consensus       321 ~~l---------------------------~~~~~~~---~~a~~~~~~~~~l~~L~~~~~--------~~~~~~~A~~~  362 (1313)
                      ..-                           .+.+.++   .....++..+.+++.|+..|.        ....|++|.-.
T Consensus      1183 KSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqiEiee~q~ydKa~gA 1262 (1416)
T KOG3617|consen 1183 KSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQIEIEELQTYDKAMGA 1262 (1416)
T ss_pred             hcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHHhhHHHHhhhhHHhHH
Confidence            210                           0111222   233455666677888877763        34566777666


Q ss_pred             HHHHHHHHHHhCCchhhHHHHHHH----HHHHH-------HhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Q 000742          363 AKRKKRIASELCDKGKLSDSFLVI----GESYQ-------KLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLD  431 (1313)
Q Consensus       363 ~~~a~~i~~~~~~~~~~a~~~~~l----g~~y~-------~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~  431 (1313)
                      +++|.....+.......-..+..|    +.+-.       ...+....+..++-.++ .+...+.-.....+-.+-..|.
T Consensus      1263 l~eA~kCl~ka~~k~~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lle-ep~ld~~Ir~~~~~a~lie~~v 1341 (1416)
T KOG3617|consen 1263 LEEAAKCLLKAEQKNMSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLE-EPILDDIIRCTRLFALLIEDHV 1341 (1416)
T ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh-CcCCCCcchhHHHHHHHHHHHH
Confidence            666655444433222211122221    11110       11122222222222221 1122223334566777788888


Q ss_pred             HcCCHHHHHHHHHHHH
Q 000742          432 SNGDWAGALDAFQEGY  447 (1313)
Q Consensus       432 ~~g~~~~A~~~~~kAl  447 (1313)
                      ..++|+.|..++++.-
T Consensus      1342 ~~k~y~~AyRal~el~ 1357 (1416)
T KOG3617|consen 1342 SRKNYKPAYRALTELQ 1357 (1416)
T ss_pred             hhhhccHHHHHHHHHh
Confidence            8899999988777643

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=6.6e-12  Score=136.91  Aligned_cols=241  Identities=18%  Similarity=0.098  Sum_probs=151.8

Q ss_pred             EEEccCCCCCHHHHHHHHhcccCCCCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcC
Q 000742          893 TLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAE  972 (1313)
Q Consensus       893 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~  972 (1313)
                      .+.+++-.+...|+..++.-=..+..|++..|.+..+.+.|..   ...+.|++++.|+|+.|-|..  +..+......+
T Consensus        97 ~~si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~n--w~~v~~i~eqL  171 (505)
T KOG3207|consen   97 VLSISNKQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHN--WFPVLKIAEQL  171 (505)
T ss_pred             HhhhcCceeEEecHHHHHHHhhhHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHh--HHHHHHHHHhc
Confidence            3456666666677777665434457888889988888877654   456678889999999987764  34555666778


Q ss_pred             CCccEEEeCCCCCCChhhHHHHHHhhccCCccceeecCCCCCChHHHHHHHHHhhcCCccEEEccCCC-CCCchHHHHHH
Q 000742          973 STLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTN-LGSDGSLQLVE 1051 (1313)
Q Consensus       973 ~~L~~L~Ls~n~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~ 1051 (1313)
                      ++|+.|+||.|.+....+-.. .   ..+++|+.|.|+.|+|+...+..+  +...|+|..|+|..|. +.   ......
T Consensus       172 p~Le~LNls~Nrl~~~~~s~~-~---~~l~~lK~L~l~~CGls~k~V~~~--~~~fPsl~~L~L~~N~~~~---~~~~~~  242 (505)
T KOG3207|consen  172 PSLENLNLSSNRLSNFISSNT-T---LLLSHLKQLVLNSCGLSWKDVQWI--LLTFPSLEVLYLEANEIIL---IKATST  242 (505)
T ss_pred             ccchhcccccccccCCccccc-h---hhhhhhheEEeccCCCCHHHHHHH--HHhCCcHHHhhhhcccccc---eecchh
Confidence            899999999998532221110 0   145678888888888886655544  3345778888888884 22   122222


Q ss_pred             HHhcCCCcccEEEccCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHH---HHHHHhcCCCCceeEEEeecCCCC
Q 000742         1052 SLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGAN---ALASLLMNPQCCLKVLVLSKCQLG 1128 (1313)
Q Consensus      1052 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~---~l~~~l~~~~~~L~~L~Ls~n~i~ 1128 (1313)
                      .+   .+.|+.|||++|++-+..-   ...+..+++|..|+++.|.|.+....   .+...-.  -.+|+.|+++.|+|.
T Consensus       243 ~i---~~~L~~LdLs~N~li~~~~---~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~--f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  243 KI---LQTLQELDLSNNNLIDFDQ---GYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHT--FPKLEYLNISENNIR  314 (505)
T ss_pred             hh---hhHHhhccccCCccccccc---ccccccccchhhhhccccCcchhcCCCccchhhhcc--cccceeeecccCccc
Confidence            22   2568888888888655421   12345677888888888876632211   1111111  124777777777775


Q ss_pred             HHHHHHHHHHhhcCCCccEEEccCCCCChh
Q 000742         1129 LAGVLQLIKALSENDTLEELNLADNASKEL 1158 (1313)
Q Consensus      1129 ~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~ 1158 (1313)
                      +..   -...+...++|+.|.+..|.++.+
T Consensus       315 ~w~---sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  315 DWR---SLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             ccc---ccchhhccchhhhhhccccccccc
Confidence            431   223455566777777777776654

>PLN02789 farnesyltranstransferase

Probab=99.13  E-value=2.2e-09  Score=120.65  Aligned_cols=205  Identities=10%  Similarity=-0.013  Sum_probs=167.4

Q ss_pred             hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742            5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRG-EYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH   83 (1313)
Q Consensus         5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g-~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~   83 (1313)
                      .+..++|+..+.++++.+|....+  ++..|.++...| ++++|+.++.++++..++.      ..+++..+.++..+|+
T Consensus        50 ~e~serAL~lt~~aI~lnP~~yta--W~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn------yqaW~~R~~~l~~l~~  121 (320)
T PLN02789         50 DERSPRALDLTADVIRLNPGNYTV--WHFRRLCLEALDADLEEELDFAEDVAEDNPKN------YQIWHHRRWLAEKLGP  121 (320)
T ss_pred             CCCCHHHHHHHHHHHHHCchhHHH--HHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc------hHHhHHHHHHHHHcCc
Confidence            456788999999999999998877  889999999998 6899999999999887543      7789999999999987


Q ss_pred             h--HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchh
Q 000742           84 F--KDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSF  161 (1313)
Q Consensus        84 ~--~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~  161 (1313)
                      .  ++++.++ ++++++.+++-      .+|...+.++..+        +++++|++++.++++.               
T Consensus       122 ~~~~~el~~~-~kal~~dpkNy------~AW~~R~w~l~~l--------~~~~eeL~~~~~~I~~---------------  171 (320)
T PLN02789        122 DAANKELEFT-RKILSLDAKNY------HAWSHRQWVLRTL--------GGWEDELEYCHQLLEE---------------  171 (320)
T ss_pred             hhhHHHHHHH-HHHHHhCcccH------HHHHHHHHHHHHh--------hhHHHHHHHHHHHHHH---------------
Confidence            4  7889999 99998877653      5789999999988        8999999999999988               


Q ss_pred             hHHHHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHH----cCCHHHHHH
Q 000742          162 LKEYIDAHNNIGMLQMEL---DNL----EEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYME----LRMWDKSRE  230 (1313)
Q Consensus       162 ~p~~~~~~~~la~~y~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~  230 (1313)
                      .|....+|+..+.+....   |.+    ++++++..+++.+.+.         ...+|.+++.++..    +++..+|++
T Consensus       172 d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~---------N~SaW~Yl~~ll~~~~~~l~~~~~~~~  242 (320)
T PLN02789        172 DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPR---------NESPWRYLRGLFKDDKEALVSDPEVSS  242 (320)
T ss_pred             CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCC---------CcCHHHHHHHHHhcCCcccccchhHHH
Confidence            234467899999888765   333    5788899999988444         46688999999988    456677888


Q ss_pred             HHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Q 000742          231 HIEQDIIICKKIEHCQGEAKGYINLGELHYRV  262 (1313)
Q Consensus       231 ~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~  262 (1313)
                      .+.+++...      +....++..|+.+|...
T Consensus       243 ~~~~~~~~~------~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        243 VCLEVLSKD------SNHVFALSDLLDLLCEG  268 (320)
T ss_pred             HHHHhhccc------CCcHHHHHHHHHHHHhh
Confidence            888877642      36677888899999753

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=1.6e-11  Score=134.04  Aligned_cols=241  Identities=18%  Similarity=0.089  Sum_probs=160.2

Q ss_pred             EEecCCCCCHHHHHHHHHHHHhcccCccceEEEccCCCCCHHHHHHHHhcccCCCCcCEEEecCCCCChhHHHHHHHHHh
Q 000742          863 LDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILK  942 (1313)
Q Consensus       863 L~Ls~n~l~~~~~~~L~~~l~~~~~~~~l~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~  942 (1313)
                      +.+++-.+.-.|+..++.   ......+|+.+.|.++.+...+..   .....|++++.||||+|-|...  ..+.++..
T Consensus        98 ~si~nK~vE~iGfDki~a---kQsn~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~nw--~~v~~i~e  169 (505)
T KOG3207|consen   98 LSISNKQVEFIGFDKIAA---KQSNLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHNW--FPVLKIAE  169 (505)
T ss_pred             hhhcCceeEEecHHHHHH---HhhhHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHhH--HHHHHHHH
Confidence            556666676677777765   122344577888888888766654   3344579999999999988764  34677788


Q ss_pred             cCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHHHhhccCCccceeecCCCC-CChHHHHH
Q 000742          943 NCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLK-LSKPVVDR 1021 (1313)
Q Consensus       943 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~-l~~~~~~~ 1021 (1313)
                      .+|+|+.|+|+.|.+....-....   ...++|+.|.|+.|. ++...+..   .+..+|+|+.|+|..|. +... ...
T Consensus       170 qLp~Le~LNls~Nrl~~~~~s~~~---~~l~~lK~L~l~~CG-ls~k~V~~---~~~~fPsl~~L~L~~N~~~~~~-~~~  241 (505)
T KOG3207|consen  170 QLPSLENLNLSSNRLSNFISSNTT---LLLSHLKQLVLNSCG-LSWKDVQW---ILLTFPSLEVLYLEANEIILIK-ATS  241 (505)
T ss_pred             hcccchhcccccccccCCccccch---hhhhhhheEEeccCC-CCHHHHHH---HHHhCCcHHHhhhhccccccee-cch
Confidence            899999999999987532111111   146789999999999 56554444   44578999999999995 2111 111


Q ss_pred             HHHHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHHHHH--HHHHhcCCCccEEEccCCCCC
Q 000742         1022 LCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKF--TASVSLVHGILELNLGGNPIM 1099 (1313)
Q Consensus      1022 l~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l--~~~l~~~~~L~~L~Ls~N~i~ 1099 (1313)
                      .   .-...|++|+|++|++-+..-...    ...++.|..|+++.|+|++......  ..-....++|+.|+++.|+|.
T Consensus       242 ~---~i~~~L~~LdLs~N~li~~~~~~~----~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  242 T---KILQTLQELDLSNNNLIDFDQGYK----VGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             h---hhhhHHhhccccCCcccccccccc----cccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence            1   112459999999998866431111    1345789999999999877532111  112345789999999999996


Q ss_pred             hHHHHHHHHHhcCCCCceeEEEeecCCCCHH
Q 000742         1100 KEGANALASLLMNPQCCLKVLVLSKCQLGLA 1130 (1313)
Q Consensus      1100 ~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~ 1130 (1313)
                      +-  ..+.....-  .+|+.|.+..|.|+.+
T Consensus       315 ~w--~sl~~l~~l--~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  315 DW--RSLNHLRTL--ENLKHLRITLNYLNKE  341 (505)
T ss_pred             cc--cccchhhcc--chhhhhhccccccccc
Confidence            42  233332221  1488888888888754

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=1.4e-10  Score=120.12  Aligned_cols=236  Identities=19%  Similarity=0.228  Sum_probs=158.7

Q ss_pred             EEEccCCCCCHHHHHHHHhcccCCCCcCEEEecCCCCChhHHHHHHHHHhc-CCCCcEEEeecCCCCHHHHHHHHHHHhc
Q 000742          893 TLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKN-CKVLYSLNIENCSITSRTIQKVADALGA  971 (1313)
Q Consensus       893 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~  971 (1313)
                      .||+..-.|.+.....+..     .....+.+....+.+.   .+++.+.- -+.|+.|+|++..|+...+..   .|+.
T Consensus       140 ~lDl~~r~i~p~~l~~l~~-----rgV~v~Rlar~~~~~p---rlae~~~~frsRlq~lDLS~s~it~stl~~---iLs~  208 (419)
T KOG2120|consen  140 TLDLTGRNIHPDVLGRLLS-----RGVIVFRLARSFMDQP---RLAEHFSPFRSRLQHLDLSNSVITVSTLHG---ILSQ  208 (419)
T ss_pred             eeccCCCccChhHHHHHHh-----CCeEEEEcchhhhcCc---hhhhhhhhhhhhhHHhhcchhheeHHHHHH---HHHH
Confidence            4455555554444444444     4555566555444443   13333322 235999999999999766555   4678


Q ss_pred             CCCccEEEeCCCCCCChhhHHHHHHhhccCCccceeecCCCC-CChHHHHHHHHHhhcCCccEEEccCCCCCCchHHHHH
Q 000742          972 ESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLK-LSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLV 1050 (1313)
Q Consensus       972 ~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 1050 (1313)
                      |..|+.|+|.++. +++.    +...+..+.+|..|+|++|. ++..+...+  +..++.|..|+|+.|.+..+.+..+.
T Consensus       209 C~kLk~lSlEg~~-LdD~----I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll--~~scs~L~~LNlsWc~l~~~~Vtv~V  281 (419)
T KOG2120|consen  209 CSKLKNLSLEGLR-LDDP----IVNTIAKNSNLVRLNLSMCSGFTENALQLL--LSSCSRLDELNLSWCFLFTEKVTVAV  281 (419)
T ss_pred             HHhhhhccccccc-cCcH----HHHHHhccccceeeccccccccchhHHHHH--HHhhhhHhhcCchHhhccchhhhHHH
Confidence            9999999999999 5655    45566788999999999876 766655544  33466799999999988776655555


Q ss_pred             HHHhcCCCcccEEEccCCC--CChhHHHHHHHHHhcCCCccEEEccCCC-CChHHHHHHHHHhcCCCCceeEEEeecCCC
Q 000742         1051 ESLFSRAQESVKLDLSYCG--LESTCIHKFTASVSLVHGILELNLGGNP-IMKEGANALASLLMNPQCCLKVLVLSKCQL 1127 (1313)
Q Consensus      1051 ~~l~~~~~~L~~L~Ls~n~--l~~~~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i 1127 (1313)
                      ..+.   .+|+.|+|+++.  +...   .++.....+++|.+||||.|. +++.....+.++-     .|++|.|+.|..
T Consensus       282 ~his---e~l~~LNlsG~rrnl~~s---h~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~-----~L~~lSlsRCY~  350 (419)
T KOG2120|consen  282 AHIS---ETLTQLNLSGYRRNLQKS---HLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN-----YLQHLSLSRCYD  350 (419)
T ss_pred             hhhc---hhhhhhhhhhhHhhhhhh---HHHHHHHhCCceeeeccccccccCchHHHHHHhcc-----hheeeehhhhcC
Confidence            4443   679999999986  4444   344445689999999999987 7765455554432     399999999974


Q ss_pred             CHHHHHHHHHHhhcCCCccEEEccCCCCChhhhh
Q 000742         1128 GLAGVLQLIKALSENDTLEELNLADNASKELTLQ 1161 (1313)
Q Consensus      1128 ~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~ 1161 (1313)
                      -...   ..-.+...|+|.+|++.+. +.|...+
T Consensus       351 i~p~---~~~~l~s~psl~yLdv~g~-vsdt~me  380 (419)
T KOG2120|consen  351 IIPE---TLLELNSKPSLVYLDVFGC-VSDTTME  380 (419)
T ss_pred             CChH---HeeeeccCcceEEEEeccc-cCchHHH
Confidence            3211   1123566789999999886 3343333

>PLN02789 farnesyltranstransferase

Probab=99.09  E-value=5.8e-09  Score=117.33  Aligned_cols=199  Identities=10%  Similarity=-0.008  Sum_probs=161.7

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHcc-ChHHHHHHHHHHHHHHHHHhcCHHHHH
Q 000742           31 ANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLE-HFKDALIYQVKKHLELAKDASDLVEQQ  109 (1313)
Q Consensus        31 ~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g-~~~~A~~~~~~kal~l~~~~~~~~~~a  109 (1313)
                      +..+-.++...+.+++|+..+.+++++.+..      ..++...|.++..+| ++++|+..+ .++++..++..      
T Consensus        40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~~------ytaW~~R~~iL~~L~~~l~eeL~~~-~~~i~~npkny------  106 (320)
T PLN02789         40 MDYFRAVYASDERSPRALDLTADVIRLNPGN------YTVWHFRRLCLEALDADLEEELDFA-EDVAEDNPKNY------  106 (320)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCchh------HHHHHHHHHHHHHcchhHHHHHHHH-HHHHHHCCcch------
Confidence            4455556777889999999999999998554      789999999999998 689999999 99999877653      


Q ss_pred             HHHHHHHHHHHHHhccCCcchhh--HHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHH
Q 000742          110 RACTQLGRTYYEMFLRSDDDHYS--IRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKK  187 (1313)
Q Consensus       110 ~a~~~lg~~y~~l~~~~~~~~~~--~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~  187 (1313)
                      .+|+..+.++..+        +.  +++++.++.+++++               .|....+|...+.++...|++++|++
T Consensus       107 qaW~~R~~~l~~l--------~~~~~~~el~~~~kal~~---------------dpkNy~AW~~R~w~l~~l~~~~eeL~  163 (320)
T PLN02789        107 QIWHHRRWLAEKL--------GPDAANKELEFTRKILSL---------------DAKNYHAWSHRQWVLRTLGGWEDELE  163 (320)
T ss_pred             HHhHHHHHHHHHc--------CchhhHHHHHHHHHHHHh---------------CcccHHHHHHHHHHHHHhhhHHHHHH
Confidence            4688888888766        44  36778888888877               44668899999999999999999999


Q ss_pred             HHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHH
Q 000742          188 FLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMEL---RMW----DKSREHIEQDIIICKKIEHCQGEAKGYINLGELHY  260 (1313)
Q Consensus       188 ~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~---g~~----~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~  260 (1313)
                      ++.++++.         ++....+|+.++.+....   |.+    ++++++..+++.+.+      ....+|..++.++.
T Consensus       164 ~~~~~I~~---------d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P------~N~SaW~Yl~~ll~  228 (320)
T PLN02789        164 YCHQLLEE---------DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANP------RNESPWRYLRGLFK  228 (320)
T ss_pred             HHHHHHHH---------CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCC------CCcCHHHHHHHHHh
Confidence            99999998         334567899999888776   333    578899999999876      77788899999988


Q ss_pred             H----hcCHHHHHHHHHHHHHHHH
Q 000742          261 R----VQKYDEAILCYQKALNLAQ  280 (1313)
Q Consensus       261 ~----~g~~~~A~~~~~kal~~~~  280 (1313)
                      .    .++..+|+..+.+++...+
T Consensus       229 ~~~~~l~~~~~~~~~~~~~~~~~~  252 (320)
T PLN02789        229 DDKEALVSDPEVSSVCLEVLSKDS  252 (320)
T ss_pred             cCCcccccchhHHHHHHHhhcccC
Confidence            7    4566789999888777433

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.08  E-value=1.3e-06  Score=99.59  Aligned_cols=394  Identities=13%  Similarity=0.011  Sum_probs=222.7

Q ss_pred             hhhHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742            5 EMQMSEAKRAYRSAKEEGNR-QEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH   83 (1313)
Q Consensus         5 ~~~~~~A~~~l~~a~~~~~~-~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~   83 (1313)
                      ++.|++|....+    .+.. .......+..+.+.++.+..++|++.++-. +        .....+....|++++++|+
T Consensus        59 ~~ky~~ALk~ik----k~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~-~--------~~~~~ll~L~AQvlYrl~~  125 (652)
T KOG2376|consen   59 LDKYEDALKLIK----KNGALLVINSFFFEKAYCEYRLNKLDEALKTLKGL-D--------RLDDKLLELRAQVLYRLER  125 (652)
T ss_pred             hhHHHHHHHHHH----hcchhhhcchhhHHHHHHHHHcccHHHHHHHHhcc-c--------ccchHHHHHHHHHHHHHhh
Confidence            456666663333    2222 112222368899999999999999998821 1        1114577788999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhcC-------------------------HHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHH
Q 000742           84 FKDALIYQVKKHLELAKDASD-------------------------LVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKK  138 (1313)
Q Consensus        84 ~~~A~~~~~~kal~l~~~~~~-------------------------~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~  138 (1313)
                      |++|++.| +..++-..+..+                         .......+++.|-++...        |+|.+|++
T Consensus       126 ydealdiY-~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~--------gky~qA~e  196 (652)
T KOG2376|consen  126 YDEALDIY-QHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIEN--------GKYNQAIE  196 (652)
T ss_pred             HHHHHHHH-HHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhc--------ccHHHHHH
Confidence            99999999 655332111100                         011224567778888766        99999999


Q ss_pred             HHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHH
Q 000742          139 YFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNV  218 (1313)
Q Consensus       139 ~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~  218 (1313)
                      .+++|++++.+.-.........+..+...+...++.++..+|+.++|...|...++...     .+.+..+.+-+|+-.+
T Consensus       197 lL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~-----~D~~~~Av~~NNLva~  271 (652)
T KOG2376|consen  197 LLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP-----ADEPSLAVAVNNLVAL  271 (652)
T ss_pred             HHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC-----CCchHHHHHhcchhhh
Confidence            99999999887544443334456667888999999999999999999999999988743     3556677777777544


Q ss_pred             HHHcCCHH-HHHHHHHHHHHHHHHhc----hhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHH
Q 000742          219 YMELRMWD-KSREHIEQDIIICKKIE----HCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQID  293 (1313)
Q Consensus       219 y~~~g~~~-~A~~~~~kal~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~  293 (1313)
                      -....=++ .++..++.-.....+.-    .......++.+.+.+.+..+.-+++.+....--...|...-.........
T Consensus       272 ~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~  351 (652)
T KOG2376|consen  272 SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATK  351 (652)
T ss_pred             ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHH
Confidence            33332222 12222221111111000    01233345556666655555555444433221111111100000000000


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 000742          294 QNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRI----  369 (1313)
Q Consensus       294 ~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i----  369 (1313)
                      .....+.++.+.+...                ..+.+....      ..+-.++.....++++..|++.+......    
T Consensus       352 ~~~~~~~ka~e~L~~~----------------~~~~p~~s~------~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss  409 (652)
T KOG2376|consen  352 VREKKHKKAIELLLQF----------------ADGHPEKSK------VVLLLRAQLKISQGNPEVALEILSLFLESWKSS  409 (652)
T ss_pred             HHHHHHhhhHHHHHHH----------------hccCCchhH------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhh
Confidence            0000111111111111                111111111      11222344455677788888777744421    


Q ss_pred             HHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCc-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000742          370 ASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNL-EGQALAKVNMGNVLDSNGDWAGALDAFQEGYR  448 (1313)
Q Consensus       370 ~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~-~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~  448 (1313)
                      .......|   .+-..+-..|+..++-+-|...+.+|+......... ......+...+..-.+.|+-++|...+++.++
T Consensus       410 ~~~~~~~P---~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k  486 (652)
T KOG2376|consen  410 ILEAKHLP---GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK  486 (652)
T ss_pred             hhhhccCh---hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH
Confidence            11223333   334445556778888777888888888777654332 23334566677777788999999999999887


Q ss_pred             HH
Q 000742          449 IA  450 (1313)
Q Consensus       449 i~  450 (1313)
                      ..
T Consensus       487 ~n  488 (652)
T KOG2376|consen  487 FN  488 (652)
T ss_pred             hC
Confidence            63

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.08  E-value=1.1e-08  Score=126.33  Aligned_cols=258  Identities=12%  Similarity=0.065  Sum_probs=167.3

Q ss_pred             cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhc
Q 000742           24 RQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDAS  103 (1313)
Q Consensus        24 ~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~  103 (1313)
                      .+....++..+...|...+++++|++..+.+++..+      .....|+.+|.+|...+++.+|.-.   .++.+.+...
T Consensus        27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P------~~i~~yy~~G~l~~q~~~~~~~~lv---~~l~~~~~~~   97 (906)
T PRK14720         27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHK------KSISALYISGILSLSRRPLNDSNLL---NLIDSFSQNL   97 (906)
T ss_pred             CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------cceehHHHHHHHHHhhcchhhhhhh---hhhhhccccc
Confidence            333444477888888888888888888887777653      3377888888888888886665432   3344333332


Q ss_pred             CHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHH
Q 000742          104 DLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLE  183 (1313)
Q Consensus       104 ~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~  183 (1313)
                                                  ++ .+++++-..+..               .+..-.+++.+|.+|..+|+++
T Consensus        98 ----------------------------~~-~~ve~~~~~i~~---------------~~~~k~Al~~LA~~Ydk~g~~~  133 (906)
T PRK14720         98 ----------------------------KW-AIVEHICDKILL---------------YGENKLALRTLAEAYAKLNENK  133 (906)
T ss_pred             ----------------------------ch-hHHHHHHHHHHh---------------hhhhhHHHHHHHHHHHHcCChH
Confidence                                        22 222222222111               0122347788888888888888


Q ss_pred             HHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhc
Q 000742          184 EAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQ  263 (1313)
Q Consensus       184 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g  263 (1313)
                      +|...|++++++         ++..+.++.++|..|... +.++|++++.+|+..                    |...+
T Consensus       134 ka~~~yer~L~~---------D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------------------~i~~k  183 (906)
T PRK14720        134 KLKGVWERLVKA---------DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--------------------FIKKK  183 (906)
T ss_pred             HHHHHHHHHHhc---------CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------------HHhhh
Confidence            888888888887         344677888888888888 888888888888765                    45556


Q ss_pred             CHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHH
Q 000742          264 KYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASL  343 (1313)
Q Consensus       264 ~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l  343 (1313)
                      +|.++.+++++.+...+...+....+-.                          ++                        
T Consensus       184 q~~~~~e~W~k~~~~~~~d~d~f~~i~~--------------------------ki------------------------  213 (906)
T PRK14720        184 QYVGIEEIWSKLVHYNSDDFDFFLRIER--------------------------KV------------------------  213 (906)
T ss_pred             cchHHHHHHHHHHhcCcccchHHHHHHH--------------------------HH------------------------
Confidence            7788888888777776654432111000                          00                        


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHH
Q 000742          344 DRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAK  423 (1313)
Q Consensus       344 ~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~  423 (1313)
                                                .... .....+..+.-+=..|...++|++++.+++.++++.+      ....+.
T Consensus       214 --------------------------~~~~-~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~------~n~~a~  260 (906)
T PRK14720        214 --------------------------LGHR-EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDN------KNNKAR  260 (906)
T ss_pred             --------------------------Hhhh-ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC------cchhhH
Confidence                                      0000 0112235555567788888999999999999998765      344568


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000742          424 VNMGNVLDSNGDWAGALDAFQEGYRIA  450 (1313)
Q Consensus       424 ~~lg~~y~~~g~~~~A~~~~~kAl~i~  450 (1313)
                      ..++.+|.  +.|.. ...|++++++.
T Consensus       261 ~~l~~~y~--~kY~~-~~~~ee~l~~s  284 (906)
T PRK14720        261 EELIRFYK--EKYKD-HSLLEDYLKMS  284 (906)
T ss_pred             HHHHHHHH--HHccC-cchHHHHHHHh
Confidence            88888888  56655 77778777765

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.02  E-value=2.5e-05  Score=86.88  Aligned_cols=427  Identities=12%  Similarity=0.046  Sum_probs=256.0

Q ss_pred             HHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHH-HHccChHHHHHHHHHHHHHHHHHh
Q 000742           26 EEARWANVIGDILKNRG--EYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVY-LRLEHFKDALIYQVKKHLELAKDA  102 (1313)
Q Consensus        26 ~~a~~~~~lg~~y~~~g--~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y-~~~g~~~~A~~~~~~kal~l~~~~  102 (1313)
                      ..+.++..+|+.+...|  +...+++.++......+.   ....+.++..+|.++ ....+++.|..++ ++|..+....
T Consensus         5 Ava~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is---~~veart~LqLg~lL~~yT~N~elAksHL-ekA~~i~~~i   80 (629)
T KOG2300|consen    5 AVAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQIS---FLVEARTHLQLGALLLRYTKNVELAKSHL-EKAWLISKSI   80 (629)
T ss_pred             HHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCCh---HHHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHccc
Confidence            34566788899999998  888899888866554321   123467778888764 4568999999999 9999998877


Q ss_pred             cCH-HHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCC
Q 000742          103 SDL-VEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDN  181 (1313)
Q Consensus       103 ~~~-~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~  181 (1313)
                      +.. .....++..++.+|...      . ..+..|...+++|+++.+....           ..-...+.+|.++....+
T Consensus        81 p~fydvKf~a~SlLa~lh~~~------~-~s~~~~KalLrkaielsq~~p~-----------wsckllfQLaql~~idkD  142 (629)
T KOG2300|consen   81 PSFYDVKFQAASLLAHLHHQL------A-QSFPPAKALLRKAIELSQSVPY-----------WSCKLLFQLAQLHIIDKD  142 (629)
T ss_pred             ccHHhhhhHHHHHHHHHHHHh------c-CCCchHHHHHHHHHHHhcCCch-----------hhHHHHHHHHHHHhhhcc
Confidence            665 33456778899999876      1 2788899999999999665421           335678899999999999


Q ss_pred             HHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-chh---hhHHHHHHHHHH
Q 000742          182 LEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKI-EHC---QGEAKGYINLGE  257 (1313)
Q Consensus       182 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~-~~~---~~~~~~~~~la~  257 (1313)
                      +..|++.+.-.-+.++..   .............+.+.....+..+-.+....+-++.... .|+   +..-..|..+-.
T Consensus       143 ~~sA~elLavga~sAd~~---~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql  219 (629)
T KOG2300|consen  143 FPSALELLAVGAESADHI---CFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQL  219 (629)
T ss_pred             chhHHHHHhccccccchh---hhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHH
Confidence            999999865554443331   1121222222333444555555555556666655555443 121   222334445554


Q ss_pred             HH-HHhcCHHHHHHHHHHHHHHHHHccCh---h-------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000742          258 LH-YRVQKYDEAILCYQKALNLAQSMEDE---D-------------------ALASQIDQNIETVKKAIEVMDELKKEEQ  314 (1313)
Q Consensus       258 ~~-~~~g~~~~A~~~~~kal~~~~~~~~~---~-------------------~~~~~~~~~lg~~~~a~~~~~~a~~~~~  314 (1313)
                      .| ...|+...+...+++.-+-.......   +                   .+-+.+|...-....-.++|+++.++..
T Consensus       220 ~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tD  299 (629)
T KOG2300|consen  220 SYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTD  299 (629)
T ss_pred             HHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHH
Confidence            44 45677666666555433222211110   0                   0112223332222234455555555544


Q ss_pred             HHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----chhhHHHHHHHHHHH
Q 000742          315 NLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCD----KGKLSDSFLVIGESY  390 (1313)
Q Consensus       315 ~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~----~~~~a~~~~~lg~~y  390 (1313)
                      .+......+....+  ....-..-+...++.++......+++.+|++-.............    +...+.++..+|...
T Consensus       300 e~i~q~eklkq~d~--~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys  377 (629)
T KOG2300|consen  300 EAIKQTEKLKQADL--MSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYS  377 (629)
T ss_pred             HHHHHHhhcccccc--hhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHh
Confidence            44333222222111  111112223345566666666667777777666666665554433    223456666667666


Q ss_pred             HHhhCHHHHHHHHHHHHHHHHHh------------------------------CC--------chhHHHHHHHHHHHHHH
Q 000742          391 QKLRKFNKAIKWYTKSWEMYKSI------------------------------GN--------LEGQALAKVNMGNVLDS  432 (1313)
Q Consensus       391 ~~~g~~~~A~~~~~kal~l~~~~------------------------------~~--------~~~~~~~~~~lg~~y~~  432 (1313)
                      ...+.|+.|...|..|.+.....                              +.        ....+.+++..|...+.
T Consensus       378 ~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~  457 (629)
T KOG2300|consen  378 HSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFK  457 (629)
T ss_pred             hhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence            66777777777776665533211                              00        12345677888888889


Q ss_pred             cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhHHHHHHhhcCHHH
Q 000742          433 NGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEE  479 (1313)
Q Consensus       433 ~g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~~L~~~~~~~~~~~~~  479 (1313)
                      ++++.||...+.+.++++...+..+..+..+-.|+.+....++..+.
T Consensus       458 qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es  504 (629)
T KOG2300|consen  458 QNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVES  504 (629)
T ss_pred             hccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            99999999999999999866666666666666777766555444443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.98  E-value=2.5e-07  Score=100.95  Aligned_cols=312  Identities=16%  Similarity=0.046  Sum_probs=202.3

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHH
Q 000742           27 EARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLV  106 (1313)
Q Consensus        27 ~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~  106 (1313)
                      .+.....-|..-...|+|.+|.+...++-+..      +.-...|..-+.+-..+|+++.|-.|+ .++-+..++..-  
T Consensus        83 ra~~~~~egl~~l~eG~~~qAEkl~~rnae~~------e~p~l~~l~aA~AA~qrgd~~~an~yL-~eaae~~~~~~l--  153 (400)
T COG3071          83 RARKALNEGLLKLFEGDFQQAEKLLRRNAEHG------EQPVLAYLLAAEAAQQRGDEDRANRYL-AEAAELAGDDTL--  153 (400)
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcC------cchHHHHHHHHHHHHhcccHHHHHHHH-HHHhccCCCchH--
Confidence            34445566777778899999999988854432      222566777788889999999999999 888777544332  


Q ss_pred             HHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHH
Q 000742          107 EQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAK  186 (1313)
Q Consensus       107 ~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~  186 (1313)
                         ..+...+++....        ++++.|..-..++++.               .|....+......+|...|++.+..
T Consensus       154 ---~v~ltrarlll~~--------~d~~aA~~~v~~ll~~---------------~pr~~~vlrLa~r~y~~~g~~~~ll  207 (400)
T COG3071         154 ---AVELTRARLLLNR--------RDYPAARENVDQLLEM---------------TPRHPEVLRLALRAYIRLGAWQALL  207 (400)
T ss_pred             ---HHHHHHHHHHHhC--------CCchhHHHHHHHHHHh---------------CcCChHHHHHHHHHHHHhccHHHHH
Confidence               3455666777655        9999999999988877               3455788899999999999999998


Q ss_pred             HHHHHHHhHhhhhccCCCchHHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcC
Q 000742          187 KFLIRGLEICNEEEVSEDDDGRSRLHHNLGNV--YMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQK  264 (1313)
Q Consensus       187 ~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~--y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~  264 (1313)
                      .++.+..+. .-     .......-+.+.+..  ....++-+.+....+---.+-.+   ....+.....++.-+...|+
T Consensus       208 ~~l~~L~ka-~~-----l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~---lr~~p~l~~~~a~~li~l~~  278 (400)
T COG3071         208 AILPKLRKA-GL-----LSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK---LRNDPELVVAYAERLIRLGD  278 (400)
T ss_pred             HHHHHHHHc-cC-----CChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH---hhcChhHHHHHHHHHHHcCC
Confidence            887776543 11     111122222222221  22222222222211111111111   11335566677788889999


Q ss_pred             HHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHH
Q 000742          265 YDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLD  344 (1313)
Q Consensus       265 ~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~  344 (1313)
                      +++|.+..+++++..-   +.. ...    -.+.          .                ..+++              
T Consensus       279 ~~~A~~~i~~~Lk~~~---D~~-L~~----~~~~----------l----------------~~~d~--------------  310 (400)
T COG3071         279 HDEAQEIIEDALKRQW---DPR-LCR----LIPR----------L----------------RPGDP--------------  310 (400)
T ss_pred             hHHHHHHHHHHHHhcc---Chh-HHH----HHhh----------c----------------CCCCc--------------
Confidence            9999999998887542   211 000    0000          0                01111              


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Q 000742          345 RLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKV  424 (1313)
Q Consensus       345 ~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~  424 (1313)
                                  .+-++..++      .+...+..+..+..+|..|++.+.+.+|..+|+.|++..+       .+..+.
T Consensus       311 ------------~~l~k~~e~------~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-------s~~~~~  365 (400)
T COG3071         311 ------------EPLIKAAEK------WLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP-------SASDYA  365 (400)
T ss_pred             ------------hHHHHHHHH------HHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-------ChhhHH
Confidence                        111111111      2234455669999999999999999999999999997643       456688


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 000742          425 NMGNVLDSNGDWAGALDAFQEGYRIAVEANL  455 (1313)
Q Consensus       425 ~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~  455 (1313)
                      .+|.+|.+.|+.++|.+.+++++........
T Consensus       366 ~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~  396 (400)
T COG3071         366 ELADALDQLGEPEEAEQVRREALLLTRQPNL  396 (400)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999999977655443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.98  E-value=5.5e-09  Score=103.90  Aligned_cols=117  Identities=11%  Similarity=0.063  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHH
Q 000742          137 KKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLG  216 (1313)
Q Consensus       137 ~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg  216 (1313)
                      ...|++++++               .|.   .+..+|.++...|++++|+.+|++++.+         .|....++..+|
T Consensus        13 ~~~~~~al~~---------------~p~---~~~~~g~~~~~~g~~~~A~~~~~~al~~---------~P~~~~a~~~lg   65 (144)
T PRK15359         13 EDILKQLLSV---------------DPE---TVYASGYASWQEGDYSRAVIDFSWLVMA---------QPWSWRAHIALA   65 (144)
T ss_pred             HHHHHHHHHc---------------CHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHc---------CCCcHHHHHHHH
Confidence            4567777776               233   2567899999999999999999999988         444688999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChh
Q 000742          217 NVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDED  286 (1313)
Q Consensus       217 ~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~  286 (1313)
                      .++...|++++|+..|++++.+.+      ..+.+++++|.++...|++++|+..|++++++.|.....+
T Consensus        66 ~~~~~~g~~~~A~~~y~~Al~l~p------~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~  129 (144)
T PRK15359         66 GTWMMLKEYTTAINFYGHALMLDA------SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWS  129 (144)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcCC------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence            999999999999999999999866      8899999999999999999999999999999998776544

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.97  E-value=2e-07  Score=98.78  Aligned_cols=345  Identities=13%  Similarity=0.106  Sum_probs=197.4

Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 000742           38 LKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGR  117 (1313)
Q Consensus        38 y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~  117 (1313)
                      +....+|.-|+..++-.....     .......-.++|.||+.+|+|++|+..| +-+.+  .+..+    +....++|.
T Consensus        32 fls~rDytGAislLefk~~~~-----~EEE~~~~lWia~C~fhLgdY~~Al~~Y-~~~~~--~~~~~----~el~vnLAc   99 (557)
T KOG3785|consen   32 FLSNRDYTGAISLLEFKLNLD-----REEEDSLQLWIAHCYFHLGDYEEALNVY-TFLMN--KDDAP----AELGVNLAC   99 (557)
T ss_pred             HHhcccchhHHHHHHHhhccc-----hhhhHHHHHHHHHHHHhhccHHHHHHHH-HHHhc--cCCCC----cccchhHHH
Confidence            345678999998887665432     2333567788999999999999999999 66655  22221    346788999


Q ss_pred             HHHHHhccCCcchhhHHHHHHHHHHH----------HHHHHHhccCCCCC-cchhhHHHHHHHHHHHHHHHHcCCHHHHH
Q 000742          118 TYYEMFLRSDDDHYSIRNAKKYFKSA----------MKLAQTLKENPATS-RSSFLKEYIDAHNNIGMLQMELDNLEEAK  186 (1313)
Q Consensus       118 ~y~~l~~~~~~~~~~~~~A~~~~~~A----------l~l~~~~~~~~~~~-~~~~~p~~~~~~~~la~~y~~~g~~~~A~  186 (1313)
                      ++..+        |.|.+|.....+|          ..++.++++..... ..+...+..+-...+|.+++..-.|++|+
T Consensus       100 c~FyL--------g~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAI  171 (557)
T KOG3785|consen  100 CKFYL--------GQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAI  171 (557)
T ss_pred             HHHHH--------HHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHH
Confidence            99988        9999998887664          22233333321000 00111122344566788888888999999


Q ss_pred             HHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHH
Q 000742          187 KFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYD  266 (1313)
Q Consensus       187 ~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  266 (1313)
                      +.|.+.+.-         .+.......++|.+|+++.-|+-+.+.+.--+...+      +...+....+..+++.=+-.
T Consensus       172 dvYkrvL~d---------n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~p------dStiA~NLkacn~fRl~ngr  236 (557)
T KOG3785|consen  172 DVYKRVLQD---------NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFP------DSTIAKNLKACNLFRLINGR  236 (557)
T ss_pred             HHHHHHHhc---------ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCC------CcHHHHHHHHHHHhhhhccc
Confidence            999998765         444566778899999999988888777766555544      44445555554444432222


Q ss_pred             HHHHHHH----------------------------HHHHHHHHcc----ChhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000742          267 EAILCYQ----------------------------KALNLAQSME----DEDALASQIDQNIETVKKAIEVMDELKKEEQ  314 (1313)
Q Consensus       267 ~A~~~~~----------------------------kal~~~~~~~----~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~  314 (1313)
                      .|..-.+                            -|++..|...    .....+...|.+.+++.+|.....+..    
T Consensus       237 ~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~----  312 (557)
T KOG3785|consen  237 TAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD----  312 (557)
T ss_pred             hhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC----
Confidence            2221111                            1222222211    111111223344445555544443321    


Q ss_pred             HHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhh
Q 000742          315 NLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLR  394 (1313)
Q Consensus       315 ~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g  394 (1313)
                                  ..++.+   ++-.+.....+|..........-|.    +...+...-+..-+...-...+|.+++-..
T Consensus       313 ------------PttP~E---yilKgvv~aalGQe~gSreHlKiAq----qffqlVG~Sa~ecDTIpGRQsmAs~fFL~~  373 (557)
T KOG3785|consen  313 ------------PTTPYE---YILKGVVFAALGQETGSREHLKIAQ----QFFQLVGESALECDTIPGRQSMASYFFLSF  373 (557)
T ss_pred             ------------CCChHH---HHHHHHHHHHhhhhcCcHHHHHHHH----HHHHHhcccccccccccchHHHHHHHHHHH
Confidence                        111211   1112222333333222222222222    222222222222222333455778888888


Q ss_pred             CHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000742          395 KFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEG  446 (1313)
Q Consensus       395 ~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kA  446 (1313)
                      +|++-+.|+...-..+-      ......+++|+++...|+|.+|.+.|-+.
T Consensus       374 qFddVl~YlnSi~sYF~------NdD~Fn~N~AQAk~atgny~eaEelf~~i  419 (557)
T KOG3785|consen  374 QFDDVLTYLNSIESYFT------NDDDFNLNLAQAKLATGNYVEAEELFIRI  419 (557)
T ss_pred             HHHHHHHHHHHHHHHhc------CcchhhhHHHHHHHHhcChHHHHHHHhhh
Confidence            99999988765544432      33455789999999999999999887653

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.94  E-value=1.3e-08  Score=107.04  Aligned_cols=125  Identities=15%  Similarity=0.204  Sum_probs=107.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHH
Q 000742          131 YSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSR  210 (1313)
Q Consensus       131 ~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  210 (1313)
                      ++.++++..++++++.               .|..+..|..+|.+|...|++++|+..|++|+++.+         ....
T Consensus        53 ~~~~~~i~~l~~~L~~---------------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P---------~~~~  108 (198)
T PRK10370         53 QTPEAQLQALQDKIRA---------------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG---------ENAE  108 (198)
T ss_pred             hhHHHHHHHHHHHHHH---------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---------CCHH
Confidence            6778888888888877               456688999999999999999999999999999843         3577


Q ss_pred             HHHHHHHH-HHHcCC--HHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccCh
Q 000742          211 LHHNLGNV-YMELRM--WDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDE  285 (1313)
Q Consensus       211 ~~~~lg~~-y~~~g~--~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~  285 (1313)
                      ++..+|.+ |...|+  +++|.+.++++++..+      ....++..+|..++..|++++|+.+++++++..+...+.
T Consensus       109 ~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP------~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r  180 (198)
T PRK10370        109 LYAALATVLYYQAGQHMTPQTREMIDKALALDA------NEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR  180 (198)
T ss_pred             HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence            88999997 467787  5999999999999976      778899999999999999999999999999998875543

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.94  E-value=7e-06  Score=94.15  Aligned_cols=282  Identities=11%  Similarity=0.085  Sum_probs=173.6

Q ss_pred             HcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHH
Q 000742          178 ELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGE  257 (1313)
Q Consensus       178 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~  257 (1313)
                      ..|+..+-+..|.+|+......   .........|..+|..|...|+.+.|...|++|.+..=  +...+.+.+|...|.
T Consensus       359 ~e~~~~~~i~tyteAv~~vdP~---ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y--~~v~dLa~vw~~wae  433 (835)
T KOG2047|consen  359 YEGNAAEQINTYTEAVKTVDPK---KAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY--KTVEDLAEVWCAWAE  433 (835)
T ss_pred             hcCChHHHHHHHHHHHHccCcc---cCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc--cchHHHHHHHHHHHH
Confidence            3567788888888888765432   22334567889999999999999999999999987632  223467889999999


Q ss_pred             HHHHhcCHHHHHHHHHHHHHHHHH-----ccChhHH------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000742          258 LHYRVQKYDEAILCYQKALNLAQS-----MEDEDAL------ASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIA  326 (1313)
Q Consensus       258 ~~~~~g~~~~A~~~~~kal~~~~~-----~~~~~~~------~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~  326 (1313)
                      .-.+..+++.|++..+.|..+-..     ..+....      ...++....++.++++-++.....+..+..+.      
T Consensus       434 mElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr------  507 (835)
T KOG2047|consen  434 MELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR------  507 (835)
T ss_pred             HHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh------
Confidence            999999999999999998754221     0111111      12244445566666666655554444444332      


Q ss_pred             hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHH---HHHHHHHHhhCHHHHHHHH
Q 000742          327 KGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFL---VIGESYQKLRKFNKAIKWY  403 (1313)
Q Consensus       327 ~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~---~lg~~y~~~g~~~~A~~~~  403 (1313)
                      ..+|.-          ..+.+.....-.-++++.+.|++.+.+++    .|...+++.   .....-+.-...+.|...|
T Consensus       508 iaTPqi----------i~NyAmfLEeh~yfeesFk~YErgI~LFk----~p~v~diW~tYLtkfi~rygg~klEraRdLF  573 (835)
T KOG2047|consen  508 IATPQI----------IINYAMFLEEHKYFEESFKAYERGISLFK----WPNVYDIWNTYLTKFIKRYGGTKLERARDLF  573 (835)
T ss_pred             cCCHHH----------HHHHHHHHHhhHHHHHHHHHHHcCCccCC----CccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            112221          12233333444555666666666665542    343444443   3333334445789999999


Q ss_pred             HHHHHHHHHhCCchhHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhHHH-HHHhhcCHHHHH
Q 000742          404 TKSWEMYKSIGNLEGQA-LAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYS-HMIRFDNIEEAR  481 (1313)
Q Consensus       404 ~kal~l~~~~~~~~~~~-~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~~L~~~-~~~~~~~~~~a~  481 (1313)
                      ++|++.++     +..+ .+|...|..-.+-|--..|+..|++|-.-     -+..+.-.++++-.. .....|-...-.
T Consensus       574 EqaL~~Cp-----p~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-----v~~a~~l~myni~I~kaae~yGv~~TR~  643 (835)
T KOG2047|consen  574 EQALDGCP-----PEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-----VKEAQRLDMYNIYIKKAAEIYGVPRTRE  643 (835)
T ss_pred             HHHHhcCC-----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHHhCCcccHH
Confidence            99998665     3333 34566677777778888888888885432     122222233333221 222445566667


Q ss_pred             HHHHHHHHHHhhh
Q 000742          482 RLQHEIDKLKESK  494 (1313)
Q Consensus       482 ~~~e~~~~l~~s~  494 (1313)
                      -|+++|+.|.++.
T Consensus       644 iYekaIe~Lp~~~  656 (835)
T KOG2047|consen  644 IYEKAIESLPDSK  656 (835)
T ss_pred             HHHHHHHhCChHH
Confidence            7888888887665

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.94  E-value=1.4e-11  Score=116.80  Aligned_cols=151  Identities=16%  Similarity=0.103  Sum_probs=87.7

Q ss_pred             CcccEEEccCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHH
Q 000742         1058 QESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIK 1137 (1313)
Q Consensus      1058 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~ 1137 (1313)
                      ..++.|.||+|.++..     +..+..+.+|+.|++++|+|.+ -+..++.+.     +|+.|+++-|.+.     .++.
T Consensus        33 s~ITrLtLSHNKl~~v-----ppnia~l~nlevln~~nnqie~-lp~~issl~-----klr~lnvgmnrl~-----~lpr   96 (264)
T KOG0617|consen   33 SNITRLTLSHNKLTVV-----PPNIAELKNLEVLNLSNNQIEE-LPTSISSLP-----KLRILNVGMNRLN-----ILPR   96 (264)
T ss_pred             hhhhhhhcccCceeec-----CCcHHHhhhhhhhhcccchhhh-cChhhhhch-----hhhheecchhhhh-----cCcc
Confidence            3456666666666543     3344455677777777777763 344555443     3777777777665     3677


Q ss_pred             HhhcCCCccEEEccCCCCChh---hhhhhcccccccCCcccccccccccccccccccccccccCCCCcccccccCCccch
Q 000742         1138 ALSENDTLEELNLADNASKEL---TLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIR 1214 (1313)
Q Consensus      1138 ~l~~~~~L~~L~Ls~N~i~~~---~~~~~l~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 1214 (1313)
                      .|+..+.|+.|||++|++.+.   |-.+.+.+|+.+.|..|-+.-+|             ..++++++|++|.+.+|.+-
T Consensus        97 gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp-------------~dvg~lt~lqil~lrdndll  163 (264)
T KOG0617|consen   97 GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILP-------------PDVGKLTNLQILSLRDNDLL  163 (264)
T ss_pred             ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCC-------------hhhhhhcceeEEeeccCchh
Confidence            788888888888888887765   33333355555555555444433             34556666666666666664


Q ss_pred             hhhccccCCCCcccccccCCccchhhH
Q 000742         1215 VESAASGFDNSCTSSCQKNSSFECQFV 1241 (1313)
Q Consensus      1215 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 1241 (1313)
                      .++..    -.-.+.|+.|.+.+|+++
T Consensus       164 ~lpke----ig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  164 SLPKE----IGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             hCcHH----HHHHHHHHHHhcccceee
Confidence            44221    011235555555555544

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.92  E-value=8.9e-09  Score=102.42  Aligned_cols=126  Identities=14%  Similarity=0.008  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHH
Q 000742           88 LIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYID  167 (1313)
Q Consensus        88 ~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~  167 (1313)
                      ..++ ++++++.|..         ++.+|.++...        |++++|+.+|++++.+               .|....
T Consensus        13 ~~~~-~~al~~~p~~---------~~~~g~~~~~~--------g~~~~A~~~~~~al~~---------------~P~~~~   59 (144)
T PRK15359         13 EDIL-KQLLSVDPET---------VYASGYASWQE--------GDYSRAVIDFSWLVMA---------------QPWSWR   59 (144)
T ss_pred             HHHH-HHHHHcCHHH---------HHHHHHHHHHc--------CCHHHHHHHHHHHHHc---------------CCCcHH
Confidence            4567 8899888763         45678888877        9999999999999887               456689


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhh
Q 000742          168 AHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQG  247 (1313)
Q Consensus       168 ~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~  247 (1313)
                      ++..+|.++...|++++|+..|++++++         .+..+.+++++|.++...|++++|+..|++++++.+      .
T Consensus        60 a~~~lg~~~~~~g~~~~A~~~y~~Al~l---------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p------~  124 (144)
T PRK15359         60 AHIALAGTWMMLKEYTTAINFYGHALML---------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY------A  124 (144)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhc---------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------C
Confidence            9999999999999999999999999998         344678999999999999999999999999999977      6


Q ss_pred             HHHHHHHHHHHHHH
Q 000742          248 EAKGYINLGELHYR  261 (1313)
Q Consensus       248 ~~~~~~~la~~~~~  261 (1313)
                      .+..+.++|.+...
T Consensus       125 ~~~~~~~~~~~~~~  138 (144)
T PRK15359        125 DASWSEIRQNAQIM  138 (144)
T ss_pred             ChHHHHHHHHHHHH
Confidence            66777777766544

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.90  E-value=2.1e-05  Score=87.07  Aligned_cols=418  Identities=10%  Similarity=-0.013  Sum_probs=238.3

Q ss_pred             CccchhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHH
Q 000742            1 MGRDEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLR   80 (1313)
Q Consensus         1 m~~~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~   80 (1313)
                      |....|++..|.++|++-.+..|+.. |  +...-..-...++.+.|...|++-+-.-       .....+...+..-.+
T Consensus       150 mEE~LgNi~gaRqiferW~~w~P~eq-a--W~sfI~fElRykeieraR~IYerfV~~H-------P~v~~wikyarFE~k  219 (677)
T KOG1915|consen  150 MEEMLGNIAGARQIFERWMEWEPDEQ-A--WLSFIKFELRYKEIERARSIYERFVLVH-------PKVSNWIKYARFEEK  219 (677)
T ss_pred             HHHHhcccHHHHHHHHHHHcCCCcHH-H--HHHHHHHHHHhhHHHHHHHHHHHHheec-------ccHHHHHHHHHHHHh
Confidence            34455666666666666666655532 2  3333334444455566666665543221       125667777777777


Q ss_pred             ccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHH--------------
Q 000742           81 LEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKL--------------  146 (1313)
Q Consensus        81 ~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l--------------  146 (1313)
                      .|+..-|...| ++|++...+..   .....+...|..-...        ..++.|...|+-|++.              
T Consensus       220 ~g~~~~aR~Vy-erAie~~~~d~---~~e~lfvaFA~fEe~q--------kE~ERar~iykyAld~~pk~raeeL~k~~~  287 (677)
T KOG1915|consen  220 HGNVALARSVY-ERAIEFLGDDE---EAEILFVAFAEFEERQ--------KEYERARFIYKYALDHIPKGRAEELYKKYT  287 (677)
T ss_pred             cCcHHHHHHHH-HHHHHHhhhHH---HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence            88888888888 88887665422   1112222222222222        4455555554444332              


Q ss_pred             --HHHhccCCCCCc-------------chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHH
Q 000742          147 --AQTLKENPATSR-------------SSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRL  211 (1313)
Q Consensus       147 --~~~~~~~~~~~~-------------~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  211 (1313)
                        -++.++......             -+..|....++...-.+-...|+.+.-.+.|++|+.-.+.......-......
T Consensus       288 ~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYL  367 (677)
T KOG1915|consen  288 AFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYL  367 (677)
T ss_pred             HHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHH
Confidence              122222211100             01123345677777777777899999999999999876553111111223334


Q ss_pred             HHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHH
Q 000742          212 HHNLGNV-YMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALAS  290 (1313)
Q Consensus       212 ~~~lg~~-y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~  290 (1313)
                      |.+.+.. -....+.+.+.+.|+.++++.|-  .....+..+...|....++.+...|.+.+-.|+-..|+..--... .
T Consensus       368 WinYalyeEle~ed~ertr~vyq~~l~lIPH--kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~Y-I  444 (677)
T KOG1915|consen  368 WINYALYEELEAEDVERTRQVYQACLDLIPH--KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGY-I  444 (677)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhhcCc--ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHH-H
Confidence            4444432 24568999999999999998873  234678889999999999999999999999999988865432222 2


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742          291 QIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIA  370 (1313)
Q Consensus       291 ~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~  370 (1313)
                      .+-..++.+..+...|++.+++.+.....                       +...+..-...++.+.|...|+-|+.--
T Consensus       445 elElqL~efDRcRkLYEkfle~~Pe~c~~-----------------------W~kyaElE~~LgdtdRaRaifelAi~qp  501 (677)
T KOG1915|consen  445 ELELQLREFDRCRKLYEKFLEFSPENCYA-----------------------WSKYAELETSLGDTDRARAIFELAISQP  501 (677)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcChHhhHH-----------------------HHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence            24456677777777777776544433222                       3333334444455555555554443211


Q ss_pred             HHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHc-----------CCHHHH
Q 000742          371 SELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSN-----------GDWAGA  439 (1313)
Q Consensus       371 ~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~-----------g~~~~A  439 (1313)
                      .  -+.|  ...+-..-..-...|.+++|...|++.++..+...  .-...+.+..+..-.+.           .....|
T Consensus       502 ~--ldmp--ellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k--vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~A  575 (677)
T KOG1915|consen  502 A--LDMP--ELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK--VWISFAKFEASASEGQEDEDLAELEITDENIKRA  575 (677)
T ss_pred             c--cccH--HHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch--HHHhHHHHhccccccccccchhhhhcchhHHHHH
Confidence            0  0111  12233334445667777777777777776554332  12222223332222222           377778


Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHhhHHHHHH
Q 000742          440 LDAFQEGYRIAVEANLPSVQLSALENMHYSHMI  472 (1313)
Q Consensus       440 ~~~~~kAl~i~~~~~~~~~~~~al~~L~~~~~~  472 (1313)
                      ...|+.|....++.+....-+..+..+-..-..
T Consensus       576 R~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~  608 (677)
T KOG1915|consen  576 RKIFERANTYLKESTPKEERLMLLEAWKNMEET  608 (677)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHh
Confidence            888888887777777666666555555444444

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.89  E-value=2.3e-07  Score=98.44  Aligned_cols=191  Identities=19%  Similarity=0.171  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHH
Q 000742           27 EARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLV  106 (1313)
Q Consensus        27 ~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~  106 (1313)
                      .+..++..|..++..|+|.+|++.|++.+...+.   .+....+.+.+|.+++..|+|.+|+..+ ++.++..|..+.. 
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~---s~~a~~A~l~la~a~y~~~~y~~A~~~~-~~fi~~yP~~~~~-   78 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN---SPYAPQAQLMLAYAYYKQGDYEEAIAAY-ERFIKLYPNSPKA-   78 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT---STTHHHHHHHHHHHHHHTT-HHHHHHHH-HHHHHH-TT-TTH-
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---ChHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHCCCCcch-
Confidence            3455899999999999999999999999988753   3556789999999999999999999999 9999998887654 


Q ss_pred             HHHHHHHHHHHHHHHHhccC---CcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHH
Q 000742          107 EQQRACTQLGRTYYEMFLRS---DDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLE  183 (1313)
Q Consensus       107 ~~a~a~~~lg~~y~~l~~~~---~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~  183 (1313)
                        ..+++.+|.+++.+....   ..+.+...+|+..|+..++.+++.                             .-..
T Consensus        79 --~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S-----------------------------~y~~  127 (203)
T PF13525_consen   79 --DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNS-----------------------------EYAE  127 (203)
T ss_dssp             --HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTS-----------------------------TTHH
T ss_pred             --hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCc-----------------------------hHHH
Confidence              478899999888763222   444556667777777766554322                             2223


Q ss_pred             HHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhc
Q 000742          184 EAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQ  263 (1313)
Q Consensus       184 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g  263 (1313)
                      +|.......-..            .+.--+.+|..|.+.|.|..|+..++.+++..+.   .+....++..++..|.++|
T Consensus       128 ~A~~~l~~l~~~------------la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~---t~~~~~al~~l~~~y~~l~  192 (203)
T PF13525_consen  128 EAKKRLAELRNR------------LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPD---TPAAEEALARLAEAYYKLG  192 (203)
T ss_dssp             HHHHHHHHHHHH------------HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTT---SHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHH------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC---CchHHHHHHHHHHHHHHhC
Confidence            333333332222            2333455677777777777777777777666552   3344556677777777777


Q ss_pred             CHHHH
Q 000742          264 KYDEA  268 (1313)
Q Consensus       264 ~~~~A  268 (1313)
                      ..+.|
T Consensus       193 ~~~~a  197 (203)
T PF13525_consen  193 LKQAA  197 (203)
T ss_dssp             -HHHH
T ss_pred             ChHHH
Confidence            76643

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.88  E-value=5.6e-06  Score=98.80  Aligned_cols=245  Identities=11%  Similarity=0.057  Sum_probs=165.3

Q ss_pred             chhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHhhCCCC-------------
Q 000742            4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNR-----GEYVEALKWFRIDYDVSVKYLPEK-------------   65 (1313)
Q Consensus         4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~-----g~~~eAl~~~~~al~~~~~~~~~~-------------   65 (1313)
                      ..|++++|...|+..++.+|.+...  |..+..+....     .+.+.-...|++.....++.....             
T Consensus        50 kLg~~~eA~~~y~~Li~rNPdn~~Y--y~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~  127 (517)
T PF12569_consen   50 KLGRKEEAEKIYRELIDRNPDNYDY--YRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFK  127 (517)
T ss_pred             HcCCHHHHHHHHHHHHHHCCCcHHH--HHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHH
Confidence            3588999999999999999997666  66777776332     245666777776655554421111             


Q ss_pred             -------------CchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHH--------------hcCHHHHHHHHHHHHHH
Q 000742           66 -------------HLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKD--------------ASDLVEQQRACTQLGRT  118 (1313)
Q Consensus        66 -------------~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~--------------~~~~~~~a~a~~~lg~~  118 (1313)
                                   +.+..+..+-..|.   +..++.... .-+..+...              ...+....++++.+|..
T Consensus       128 ~~~~~yl~~~l~KgvPslF~~lk~Ly~---d~~K~~~i~-~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqh  203 (517)
T PF12569_consen  128 ERLDEYLRPQLRKGVPSLFSNLKPLYK---DPEKAAIIE-SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQH  203 (517)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHc---ChhHHHHHH-HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHH
Confidence                         11222223333332   222222111 112222111              12234456788999999


Q ss_pred             HHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhh
Q 000742          119 YYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNE  198 (1313)
Q Consensus       119 y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~  198 (1313)
                      |..+        |++++|+++.++|++.               .|..++.|...|.+|...|++++|.++++.|..+   
T Consensus       204 yd~~--------g~~~~Al~~Id~aI~h---------------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L---  257 (517)
T PF12569_consen  204 YDYL--------GDYEKALEYIDKAIEH---------------TPTLVELYMTKARILKHAGDLKEAAEAMDEAREL---  257 (517)
T ss_pred             HHHh--------CCHHHHHHHHHHHHhc---------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC---
Confidence            9888        9999999999999988               4566899999999999999999999999999887   


Q ss_pred             hccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-Hhchh--hhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 000742          199 EEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK-KIEHC--QGEAKGYINLGELHYRVQKYDEAILCYQKA  275 (1313)
Q Consensus       199 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~-~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~ka  275 (1313)
                            +...-.+....+..+.+.|+.++|.+.+..-..-.. ...+.  .........-|.+|.+.|++..|++.|...
T Consensus       258 ------D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v  331 (517)
T PF12569_consen  258 ------DLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV  331 (517)
T ss_pred             ------ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence                  222344566678888999999999887755433221 11111  122344566799999999999999999999


Q ss_pred             HHHHHHccChh
Q 000742          276 LNLAQSMEDED  286 (1313)
Q Consensus       276 l~~~~~~~~~~  286 (1313)
                      .+++.+..+..
T Consensus       332 ~k~f~~~~~DQ  342 (517)
T PF12569_consen  332 LKHFDDFEEDQ  342 (517)
T ss_pred             HHHHHHHhccc
Confidence            99988765543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.88  E-value=7e-10  Score=114.73  Aligned_cols=132  Identities=20%  Similarity=0.157  Sum_probs=99.0

Q ss_pred             CCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHH
Q 000742         1029 SCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALAS 1108 (1313)
Q Consensus      1029 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~ 1108 (1313)
                      ..|++||||+|.|+.     +-+.+. ..++++.|++|+|+|+..+      .+..+++|++||||+|.++....  +-.
T Consensus       284 q~LtelDLS~N~I~~-----iDESvK-L~Pkir~L~lS~N~i~~v~------nLa~L~~L~~LDLS~N~Ls~~~G--wh~  349 (490)
T KOG1259|consen  284 QELTELDLSGNLITQ-----IDESVK-LAPKLRRLILSQNRIRTVQ------NLAELPQLQLLDLSGNLLAECVG--WHL  349 (490)
T ss_pred             hhhhhccccccchhh-----hhhhhh-hccceeEEeccccceeeeh------hhhhcccceEeecccchhHhhhh--hHh
Confidence            359999999998864     233332 2378999999999998763      35678899999999999863221  122


Q ss_pred             HhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEccCCCCChh-hhhhhcccccccCCccccccccccccccc
Q 000742         1109 LLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKEL-TLQQNLSSVNSENLQPALKTSDCVSKEVD 1187 (1313)
Q Consensus      1109 ~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~-~~~~~l~~l~~~~l~~n~~~~~~~~~~~~ 1187 (1313)
                      -+.    ++++|.|++|.|.+.      +.+.++-+|..||+++|+|... .+.                          
T Consensus       350 KLG----NIKtL~La~N~iE~L------SGL~KLYSLvnLDl~~N~Ie~ldeV~--------------------------  393 (490)
T KOG1259|consen  350 KLG----NIKTLKLAQNKIETL------SGLRKLYSLVNLDLSSNQIEELDEVN--------------------------  393 (490)
T ss_pred             hhc----CEeeeehhhhhHhhh------hhhHhhhhheeccccccchhhHHHhc--------------------------
Confidence            222    599999999998633      4567777899999999999865 222                          


Q ss_pred             ccccccccccCCCCcccccccCCccchhhhc
Q 000742         1188 TDQHGLFAMNTDCNDLEVADSEDDKIRVESA 1218 (1313)
Q Consensus      1188 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 1218 (1313)
                              .+++++-|+.+.|.+|++.+++.
T Consensus       394 --------~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  394 --------HIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             --------ccccccHHHHHhhcCCCccccch
Confidence                    25788999999999999987754

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.86  E-value=2.9e-05  Score=89.21  Aligned_cols=389  Identities=10%  Similarity=0.117  Sum_probs=229.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHH--------------------------------
Q 000742           25 QEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQ--------------------------------   72 (1313)
Q Consensus        25 ~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~--------------------------------   72 (1313)
                      ......+..||+.|...|.+++|...|++++.......+-.....+|.                                
T Consensus       245 Dq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a  324 (835)
T KOG2047|consen  245 DQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMA  324 (835)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHH
Confidence            445667889999999999999999999998865432211111111110                                


Q ss_pred             ---------------------------HHHHHHHHccChHHHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHHHHHhc
Q 000742           73 ---------------------------SLGEVYLRLEHFKDALIYQVKKHLEL-AKDASDLVEQQRACTQLGRTYYEMFL  124 (1313)
Q Consensus        73 ---------------------------~lg~~y~~~g~~~~A~~~~~~kal~l-~~~~~~~~~~a~a~~~lg~~y~~l~~  124 (1313)
                                                 .+-.+-...|+..+-+..| ..|+.- .|.. -.......+..+|..|...  
T Consensus       325 ~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~ty-teAv~~vdP~k-a~Gs~~~Lw~~faklYe~~--  400 (835)
T KOG2047|consen  325 RFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTY-TEAVKTVDPKK-AVGSPGTLWVEFAKLYENN--  400 (835)
T ss_pred             HHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHH-HHHHHccCccc-CCCChhhHHHHHHHHHHhc--
Confidence                                       0111111223444444445 444432 1211 1122335677788888765  


Q ss_pred             cCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhc---c
Q 000742          125 RSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEE---V  201 (1313)
Q Consensus       125 ~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~---~  201 (1313)
                            |+.+.|...|++|.+.--           ....+++.+|...|..-....+++.|+...++|...-....   .
T Consensus       401 ------~~l~~aRvifeka~~V~y-----------~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~y  463 (835)
T KOG2047|consen  401 ------GDLDDARVIFEKATKVPY-----------KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYY  463 (835)
T ss_pred             ------CcHHHHHHHHHHhhcCCc-----------cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhh
Confidence                  999999999999987611           12347799999999999999999999999999976522200   0


Q ss_pred             CCCchHH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 000742          202 SEDDDGR------SRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKA  275 (1313)
Q Consensus       202 ~~~~~~~------~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ka  275 (1313)
                      .+..+.+      ..+|..++......|-++.....|++.+++--      ..+....+.|..+....-+++|.+.|++.
T Consensus       464 d~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri------aTPqii~NyAmfLEeh~yfeesFk~YErg  537 (835)
T KOG2047|consen  464 DNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI------ATPQIIINYAMFLEEHKYFEESFKAYERG  537 (835)
T ss_pred             cCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence            1122333      34566667777778888888888888887744      66778888898888888899999999999


Q ss_pred             HHHHHHccChhHHH---HHHHHhHH--HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHH
Q 000742          276 LNLAQSMEDEDALA---SQIDQNIE--TVKKAIEVMDELKK-----EEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDR  345 (1313)
Q Consensus       276 l~~~~~~~~~~~~~---~~~~~~lg--~~~~a~~~~~~a~~-----~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~  345 (1313)
                      +.+++-........   ...-...|  ....|...|+++.+     +.+.+..++..+.+..|-...+..+++.+..--.
T Consensus       538 I~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~  617 (835)
T KOG2047|consen  538 ISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVK  617 (835)
T ss_pred             CccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence            98875322211111   11111111  23556667777764     3334445555555555555555555555422222


Q ss_pred             HHHHHHHHHHH----------HHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCC
Q 000742          346 LIEKSSMIFAW----------LKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGN  415 (1313)
Q Consensus       346 L~~~~~~~~~~----------~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~  415 (1313)
                      .+..+..-.-|          ..-...|++|++...    ...........|..-.+.|..+.|...|.-+-++.    +
T Consensus       618 ~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp----~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~----d  689 (835)
T KOG2047|consen  618 EAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLP----DSKAREMCLRFADLETKLGEIDRARAIYAHGSQIC----D  689 (835)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCC----hHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcC----C
Confidence            21111111111          112344555554421    12223555667888888888888888887666554    3


Q ss_pred             chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000742          416 LEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVE  452 (1313)
Q Consensus       416 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~  452 (1313)
                      +......|...-..-.+-|+-+    .+++-+++.+.
T Consensus       690 Pr~~~~fW~twk~FEvrHGned----T~keMLRikRs  722 (835)
T KOG2047|consen  690 PRVTTEFWDTWKEFEVRHGNED----TYKEMLRIKRS  722 (835)
T ss_pred             CcCChHHHHHHHHHHHhcCCHH----HHHHHHHHHHH
Confidence            4444555555555556667733    34444555443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.85  E-value=1e-07  Score=117.80  Aligned_cols=160  Identities=9%  Similarity=-0.026  Sum_probs=136.7

Q ss_pred             HccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcc
Q 000742           80 RLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRS  159 (1313)
Q Consensus        80 ~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~  159 (1313)
                      ..+....+...+ -+++.+.++..+.   ..++..||.+....        |.+++|...++.++++             
T Consensus        61 ~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~La~i~~~~--------g~~~ea~~~l~~~~~~-------------  115 (694)
T PRK15179         61 RHAAVHKPAAAL-PELLDYVRRYPHT---ELFQVLVARALEAA--------HRSDEGLAVWRGIHQR-------------  115 (694)
T ss_pred             HhhhhcchHhhH-HHHHHHHHhcccc---HHHHHHHHHHHHHc--------CCcHHHHHHHHHHHhh-------------
Confidence            334444455555 5566666665543   47899999999988        9999999999999998             


Q ss_pred             hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000742          160 SFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIIC  239 (1313)
Q Consensus       160 ~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~  239 (1313)
                        .|+...+..++|.++.+++++++|+..+++++..         .+..+.+++.+|.++..+|++++|+..|++++.-.
T Consensus       116 --~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~  184 (694)
T PRK15179        116 --FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQH  184 (694)
T ss_pred             --CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC
Confidence              5677999999999999999999999999999998         44468899999999999999999999999999843


Q ss_pred             HHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 000742          240 KKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQS  281 (1313)
Q Consensus       240 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~  281 (1313)
                            ++...++..+|.++...|+.++|...|++|++....
T Consensus       185 ------p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~  220 (694)
T PRK15179        185 ------PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD  220 (694)
T ss_pred             ------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence                  377899999999999999999999999999988643

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.85  E-value=4.4e-07  Score=105.79  Aligned_cols=188  Identities=20%  Similarity=0.232  Sum_probs=150.4

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 000742           31 ANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQR  110 (1313)
Q Consensus        31 ~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~  110 (1313)
                      -..+|..+...|-..+|+..|++.              ..+-....||...|+..+|.... .+-++   +.+++    +
T Consensus       401 q~~laell~slGitksAl~I~Erl--------------emw~~vi~CY~~lg~~~kaeei~-~q~le---k~~d~----~  458 (777)
T KOG1128|consen  401 QRLLAELLLSLGITKSALVIFERL--------------EMWDPVILCYLLLGQHGKAEEIN-RQELE---KDPDP----R  458 (777)
T ss_pred             HHHHHHHHHHcchHHHHHHHHHhH--------------HHHHHHHHHHHHhcccchHHHHH-HHHhc---CCCcc----h
Confidence            457899999999999999988864              55667888999999999998888 66665   23332    4


Q ss_pred             HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000742          111 ACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLI  190 (1313)
Q Consensus       111 a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~  190 (1313)
                      .|..+|.+...               -.+|++|.++.+..              .+.+...+|...+..++|++|.+.++
T Consensus       459 lyc~LGDv~~d---------------~s~yEkawElsn~~--------------sarA~r~~~~~~~~~~~fs~~~~hle  509 (777)
T KOG1128|consen  459 LYCLLGDVLHD---------------PSLYEKAWELSNYI--------------SARAQRSLALLILSNKDFSEADKHLE  509 (777)
T ss_pred             hHHHhhhhccC---------------hHHHHHHHHHhhhh--------------hHHHHHhhccccccchhHHHHHHHHH
Confidence            56666666543               34556666554332              24466667777777899999999999


Q ss_pred             HHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHH
Q 000742          191 RGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAIL  270 (1313)
Q Consensus       191 ~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  270 (1313)
                      .++++         .+.....|+.+|.++.+.++++.|.++|..++.+.|      +.+.+|++++..|.+.++-.+|..
T Consensus       510 ~sl~~---------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~P------d~~eaWnNls~ayi~~~~k~ra~~  574 (777)
T KOG1128|consen  510 RSLEI---------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEP------DNAEAWNNLSTAYIRLKKKKRAFR  574 (777)
T ss_pred             HHhhc---------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCC------CchhhhhhhhHHHHHHhhhHHHHH
Confidence            99998         556788999999999999999999999999999977      889999999999999999999999


Q ss_pred             HHHHHHHHHHHccC
Q 000742          271 CYQKALNLAQSMED  284 (1313)
Q Consensus       271 ~~~kal~~~~~~~~  284 (1313)
                      .+++|++...+...
T Consensus       575 ~l~EAlKcn~~~w~  588 (777)
T KOG1128|consen  575 KLKEALKCNYQHWQ  588 (777)
T ss_pred             HHHHHhhcCCCCCe
Confidence            99999998744433

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.84  E-value=3e-11  Score=114.62  Aligned_cols=155  Identities=21%  Similarity=0.263  Sum_probs=104.5

Q ss_pred             CCCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHH
Q 000742          916 FTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLL  995 (1313)
Q Consensus       916 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~  995 (1313)
                      +.+++.|.||+|.++.     ++..+..+.+|+.|++++|+|+     .++..+++++.|++|+++-|++      ..++
T Consensus        32 ~s~ITrLtLSHNKl~~-----vppnia~l~nlevln~~nnqie-----~lp~~issl~klr~lnvgmnrl------~~lp   95 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTV-----VPPNIAELKNLEVLNLSNNQIE-----ELPTSISSLPKLRILNVGMNRL------NILP   95 (264)
T ss_pred             hhhhhhhhcccCceee-----cCCcHHHhhhhhhhhcccchhh-----hcChhhhhchhhhheecchhhh------hcCc
Confidence            3678888888888875     4455666778888888888887     5666778888888888888873      3456


Q ss_pred             HhhccCCccceeecCCCCCChHHHHHHHHHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHH
Q 000742          996 VKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCI 1075 (1313)
Q Consensus       996 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 1075 (1313)
                      ..|+.++.|+.|||+.|++......  +.+..+.+|+-|.|++|.+.     .++..+ ..+++|+.|.+..|.+-.   
T Consensus        96 rgfgs~p~levldltynnl~e~~lp--gnff~m~tlralyl~dndfe-----~lp~dv-g~lt~lqil~lrdndll~---  164 (264)
T KOG0617|consen   96 RGFGSFPALEVLDLTYNNLNENSLP--GNFFYMTTLRALYLGDNDFE-----ILPPDV-GKLTNLQILSLRDNDLLS---  164 (264)
T ss_pred             cccCCCchhhhhhccccccccccCC--cchhHHHHHHHHHhcCCCcc-----cCChhh-hhhcceeEEeeccCchhh---
Confidence            7788888888888888887664221  11222344777777777653     122222 234667777777776543   


Q ss_pred             HHHHHHHhcCCCccEEEccCCCCC
Q 000742         1076 HKFTASVSLVHGILELNLGGNPIM 1099 (1313)
Q Consensus      1076 ~~l~~~l~~~~~L~~L~Ls~N~i~ 1099 (1313)
                        ++..++.+..|++|.+.+|.++
T Consensus       165 --lpkeig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  165 --LPKEIGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             --CcHHHHHHHHHHHHhcccceee
Confidence              3555666677777777777765

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.84  E-value=8.6e-08  Score=118.69  Aligned_cols=222  Identities=9%  Similarity=0.008  Sum_probs=158.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000742          160 SFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIIC  239 (1313)
Q Consensus       160 ~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~  239 (1313)
                      .|.|....++..++..|...+++++|++.++.+++.         .|....+|+.+|.+|...+++++|.-.  .++.+.
T Consensus        25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~---------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~   93 (906)
T PRK14720         25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE---------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSF   93 (906)
T ss_pred             cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhc
Confidence            456788999999999999999999999999999887         444678999999999999998888766  665555


Q ss_pred             HHh-------------chhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHH
Q 000742          240 KKI-------------EHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVM  306 (1313)
Q Consensus       240 ~~~-------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~  306 (1313)
                      +..             .+....-.+++.+|.+|.++|++++|...|++++++.+....       +              
T Consensus        94 ~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~-------a--------------  152 (906)
T PRK14720         94 SQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPE-------I--------------  152 (906)
T ss_pred             ccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHH-------H--------------
Confidence            432             233444578999999999999999999999999999865432       1              


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHH
Q 000742          307 DELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVI  386 (1313)
Q Consensus       307 ~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~l  386 (1313)
                                                          ++++|..+... +.++|.+++.+|+..                 
T Consensus       153 ------------------------------------LNn~AY~~ae~-dL~KA~~m~~KAV~~-----------------  178 (906)
T PRK14720        153 ------------------------------------VKKLATSYEEE-DKEKAITYLKKAIYR-----------------  178 (906)
T ss_pred             ------------------------------------HHHHHHHHHHh-hHHHHHHHHHHHHHH-----------------
Confidence                                                34444444444 566666666666543                 


Q ss_pred             HHHHHHhhCHHHHHHHHHHHHHHHHHhCC--------------chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000742          387 GESYQKLRKFNKAIKWYTKSWEMYKSIGN--------------LEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVE  452 (1313)
Q Consensus       387 g~~y~~~g~~~~A~~~~~kal~l~~~~~~--------------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~  452 (1313)
                         |...++|.++.++.++.++..+...+              .......+.-+-..|...++|++++.+++.++++..+
T Consensus       179 ---~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~  255 (906)
T PRK14720        179 ---FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK  255 (906)
T ss_pred             ---HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc
Confidence               33334455555544444433322111              1223445566668999999999999999999998544


Q ss_pred             cCChhHHHHHHHhhHHHHHHhhcC
Q 000742          453 ANLPSVQLSALENMHYSHMIRFDN  476 (1313)
Q Consensus       453 ~~~~~~~~~al~~L~~~~~~~~~~  476 (1313)
                            ...+...++.+|....++
T Consensus       256 ------n~~a~~~l~~~y~~kY~~  273 (906)
T PRK14720        256 ------NNKAREELIRFYKEKYKD  273 (906)
T ss_pred             ------chhhHHHHHHHHHHHccC
Confidence                  334678888888755544

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=98.83  E-value=8.9e-05  Score=92.82  Aligned_cols=415  Identities=14%  Similarity=0.078  Sum_probs=244.2

Q ss_pred             hhHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHcc
Q 000742            6 MQMSEAKRAYRSAKEE--GNRQEEARWANVIGDILK-NRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLE   82 (1313)
Q Consensus         6 ~~~~~A~~~l~~a~~~--~~~~~~a~~~~~lg~~y~-~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g   82 (1313)
                      +-+..|++.++.+.+.  -++..++.+++.+|.+|+ ...++++|..++.+++.+..+..-.+....+.+.++.+|...+
T Consensus        35 kLI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~  114 (608)
T PF10345_consen   35 KLIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTN  114 (608)
T ss_pred             HHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcC
Confidence            3455677777777642  245778999999999998 7899999999999999998663222223566778899998887


Q ss_pred             ChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhh
Q 000742           83 HFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFL  162 (1313)
Q Consensus        83 ~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~  162 (1313)
                      ... |..+. +++++.....+..... .++..+ .+...+      ..+++..|.+.++....++...++..        
T Consensus       115 ~~~-a~~~l-~~~I~~~~~~~~~~w~-~~frll-~~~l~~------~~~d~~~Al~~L~~~~~~a~~~~d~~--------  176 (608)
T PF10345_consen  115 PKA-ALKNL-DKAIEDSETYGHSAWY-YAFRLL-KIQLAL------QHKDYNAALENLQSIAQLANQRGDPA--------  176 (608)
T ss_pred             HHH-HHHHH-HHHHHHHhccCchhHH-HHHHHH-HHHHHH------hcccHHHHHHHHHHHHHHhhhcCCHH--------
Confidence            777 99999 9999988875443211 122222 222222      11688999999999999877554432        


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhcc-CCCchHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHH
Q 000742          163 KEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEV-SEDDDGRSRLHHNLGN--VYMELRMWDKSREHIEQDIIIC  239 (1313)
Q Consensus       163 p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~~lg~--~y~~~g~~~~A~~~~~kal~~~  239 (1313)
                       ....+....|.+....+..+++++..+++......... +........++..+-.  ++...|+++.+...+++.-...
T Consensus       177 -~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~  255 (608)
T PF10345_consen  177 -VFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFL  255 (608)
T ss_pred             -HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence             34555566677778888899999999999777664210 0112333444444433  5667788888887777666555


Q ss_pred             HHhchhh------------------------------------hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcc
Q 000742          240 KKIEHCQ------------------------------------GEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSME  283 (1313)
Q Consensus       240 ~~~~~~~------------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~  283 (1313)
                      ....+.+                                    ..+-+|.--|..+...+..++|.++++++++...+..
T Consensus       256 ~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~  335 (608)
T PF10345_consen  256 DEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLK  335 (608)
T ss_pred             HHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhh
Confidence            4432211                                    1233455556666777778899999999999877654


Q ss_pred             -ChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742          284 -DEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEY  362 (1313)
Q Consensus       284 -~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~  362 (1313)
                       .......   ..+.........+....                             ...+...+......++|.++...
T Consensus       336 ~~~~~~~~---~sl~~~~~~~~~~~~l~-----------------------------~~~~~y~~~~~~~~~~~~~a~~~  383 (608)
T PF10345_consen  336 IKSPSAPS---ESLSEASERIQWLRYLQ-----------------------------CYLLFYQIWCNFIRGDWSKATQE  383 (608)
T ss_pred             ccCCCCCC---cCHHHHHHhHHHHHHHH-----------------------------HHHHHHHHHHHHHCcCHHHHHHH
Confidence             0000000   00000000000000000                             00112223333445556666666


Q ss_pred             HHHHHHHHHHhCC---chhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH-----------------------------
Q 000742          363 AKRKKRIASELCD---KGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMY-----------------------------  410 (1313)
Q Consensus       363 ~~~a~~i~~~~~~---~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~-----------------------------  410 (1313)
                      .+...........   ....+.+++..|..+...|+.+.|..+|.+..-..                             
T Consensus       384 l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~  463 (608)
T PF10345_consen  384 LEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYES  463 (608)
T ss_pred             HHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhc
Confidence            6655555444332   23345667777777777777777777776211000                             


Q ss_pred             -------------HHh----CCc--hhHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHH-HHcCChhHHHHHHHhhHH
Q 000742          411 -------------KSI----GNL--EGQALAKVNMGNVLD--SNGDWAGALDAFQEGYRIA-VEANLPSVQLSALENMHY  468 (1313)
Q Consensus       411 -------------~~~----~~~--~~~~~~~~~lg~~y~--~~g~~~~A~~~~~kAl~i~-~~~~~~~~~~~al~~L~~  468 (1313)
                                   ..+    .+.  .....++..+-.++.  ..-...++..++.++++.+ ...+.......++..|+.
T Consensus       464 ~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~  543 (608)
T PF10345_consen  464 SRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGH  543 (608)
T ss_pred             ccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence                         000    000  011111111111221  2223458888888888888 777777777777777777


Q ss_pred             HHH
Q 000742          469 SHM  471 (1313)
Q Consensus       469 ~~~  471 (1313)
                      ...
T Consensus       544 ~lf  546 (608)
T PF10345_consen  544 RLF  546 (608)
T ss_pred             HHH
Confidence            665

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.82  E-value=7.4e-08  Score=101.27  Aligned_cols=152  Identities=9%  Similarity=0.045  Sum_probs=121.8

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 000742           34 IGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACT  113 (1313)
Q Consensus        34 lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~  113 (1313)
                      -+-.|+..|+++....+.++..       +..          .-|...++.++++..+ +++++..|+..      .+|.
T Consensus        22 ~~~~Y~~~g~~~~v~~~~~~~~-------~~~----------~~~~~~~~~~~~i~~l-~~~L~~~P~~~------~~w~   77 (198)
T PRK10370         22 CVGSYLLSPKWQAVRAEYQRLA-------DPL----------HQFASQQTPEAQLQAL-QDKIRANPQNS------EQWA   77 (198)
T ss_pred             HHHHHHHcchHHHHHHHHHHHh-------Ccc----------ccccCchhHHHHHHHH-HHHHHHCCCCH------HHHH
Confidence            4567889999988655542211       000          0111267788999999 99999887664      5799


Q ss_pred             HHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHH-HHHcCC--HHHHHHHHH
Q 000742          114 QLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGML-QMELDN--LEEAKKFLI  190 (1313)
Q Consensus       114 ~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~-y~~~g~--~~~A~~~~~  190 (1313)
                      .+|.+|...        |++++|+..|++|+++               .|+.+.++..+|.+ |...|+  +++|...++
T Consensus        78 ~Lg~~~~~~--------g~~~~A~~a~~~Al~l---------------~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~  134 (198)
T PRK10370         78 LLGEYYLWR--------NDYDNALLAYRQALQL---------------RGENAELYAALATVLYYQAGQHMTPQTREMID  134 (198)
T ss_pred             HHHHHHHHC--------CCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence            999999988        9999999999999998               34568899999997 467787  599999999


Q ss_pred             HHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000742          191 RGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKK  241 (1313)
Q Consensus       191 ~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~  241 (1313)
                      ++++.         ++....++.++|..+...|++++|+.+++++++..+.
T Consensus       135 ~al~~---------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~  176 (198)
T PRK10370        135 KALAL---------DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP  176 (198)
T ss_pred             HHHHh---------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            99998         3445789999999999999999999999999999774

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.81  E-value=3.4e-08  Score=86.98  Aligned_cols=76  Identities=20%  Similarity=0.430  Sum_probs=67.8

Q ss_pred             hhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCch-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000742          377 GKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLE-GQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVE  452 (1313)
Q Consensus       377 ~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~-~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~  452 (1313)
                      |..+.++.++|.+|..+|+|++|+.+|++++++....++.. ..+.++.++|.+|..+|++++|+++|++|+++.++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k   78 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK   78 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence            56779999999999999999999999999999977777543 46899999999999999999999999999999764

...

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.81  E-value=2.7e-06  Score=93.10  Aligned_cols=295  Identities=13%  Similarity=0.059  Sum_probs=178.4

Q ss_pred             cchhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHcc
Q 000742            3 RDEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLE   82 (1313)
Q Consensus         3 ~~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g   82 (1313)
                      -..|+|.+|++...++.+..+.+..+  |..-+.+.-++|+++.|-.|..++-+..     .......+..++......|
T Consensus        95 l~eG~~~qAEkl~~rnae~~e~p~l~--~l~aA~AA~qrgd~~~an~yL~eaae~~-----~~~~l~v~ltrarlll~~~  167 (400)
T COG3071          95 LFEGDFQQAEKLLRRNAEHGEQPVLA--YLLAAEAAQQRGDEDRANRYLAEAAELA-----GDDTLAVELTRARLLLNRR  167 (400)
T ss_pred             HhcCcHHHHHHHHHHhhhcCcchHHH--HHHHHHHHHhcccHHHHHHHHHHHhccC-----CCchHHHHHHHHHHHHhCC
Confidence            35799999999999999888888777  7788899999999999999999987663     1233567788999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhh
Q 000742           83 HFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFL  162 (1313)
Q Consensus        83 ~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~  162 (1313)
                      ++..|..-. .++++..|..+      .++....++|...        |++.....+..+.-+-       ....     
T Consensus       168 d~~aA~~~v-~~ll~~~pr~~------~vlrLa~r~y~~~--------g~~~~ll~~l~~L~ka-------~~l~-----  220 (400)
T COG3071         168 DYPAARENV-DQLLEMTPRHP------EVLRLALRAYIRL--------GAWQALLAILPKLRKA-------GLLS-----  220 (400)
T ss_pred             CchhHHHHH-HHHHHhCcCCh------HHHHHHHHHHHHh--------ccHHHHHHHHHHHHHc-------cCCC-----
Confidence            999999999 99998887765      3456666777766        7776665555443221       1100     


Q ss_pred             HHHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742          163 KEYIDAHNNIGML--QMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK  240 (1313)
Q Consensus       163 p~~~~~~~~la~~--y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~  240 (1313)
                      +....-+-+.+..  ..+..+-..+.. +..-.+-.+.     .......+...++.-+...|++++|.+..+++++..-
T Consensus       221 ~~e~~~le~~a~~glL~q~~~~~~~~g-L~~~W~~~pr-----~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~  294 (400)
T COG3071         221 DEEAARLEQQAWEGLLQQARDDNGSEG-LKTWWKNQPR-----KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQW  294 (400)
T ss_pred             hHHHHHHHHHHHHHHHHHHhccccchH-HHHHHHhccH-----HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence            0111122222211  111111111111 1111111111     0111234455566677777777777777777766532


Q ss_pred             HhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742          241 KIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLT  320 (1313)
Q Consensus       241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~  320 (1313)
                             .......++  ...-+++..=++..++.++..+..+.       +                            
T Consensus       295 -------D~~L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~-------L----------------------------  330 (400)
T COG3071         295 -------DPRLCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPL-------L----------------------------  330 (400)
T ss_pred             -------ChhHHHHHh--hcCCCCchHHHHHHHHHHHhCCCChh-------H----------------------------
Confidence                   111111111  12445666666666666665554332       1                            


Q ss_pred             HHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHH
Q 000742          321 RNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAI  400 (1313)
Q Consensus       321 ~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~  400 (1313)
                                            +-.||..+...+.|.+|.++++.++...       ..+..+..+|.+|.++|+..+|.
T Consensus       331 ----------------------~~tLG~L~~k~~~w~kA~~~leaAl~~~-------~s~~~~~~la~~~~~~g~~~~A~  381 (400)
T COG3071         331 ----------------------LSTLGRLALKNKLWGKASEALEAALKLR-------PSASDYAELADALDQLGEPEEAE  381 (400)
T ss_pred             ----------------------HHHHHHHHHHhhHHHHHHHHHHHHHhcC-------CChhhHHHHHHHHHHcCChHHHH
Confidence                                  2223334444555666666666554432       23356777888999999999999


Q ss_pred             HHHHHHHHHH
Q 000742          401 KWYTKSWEMY  410 (1313)
Q Consensus       401 ~~~~kal~l~  410 (1313)
                      +.+++++-+.
T Consensus       382 ~~r~e~L~~~  391 (400)
T COG3071         382 QVRREALLLT  391 (400)
T ss_pred             HHHHHHHHHh
Confidence            9998888544

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=98.79  E-value=0.0005  Score=86.12  Aligned_cols=463  Identities=14%  Similarity=0.049  Sum_probs=277.4

Q ss_pred             chhhHHHHHHHHHHHHHhcC--c--HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHH-HHHH
Q 000742            4 DEMQMSEAKRAYRSAKEEGN--R--QEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSL-GEVY   78 (1313)
Q Consensus         4 ~~~~~~~A~~~l~~a~~~~~--~--~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~l-g~~y   78 (1313)
                      +..+++.|+.++.+++....  .  +....+.+.++.+|.+.+... |+...+++++......... ...++..+ ...+
T Consensus        72 eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~-w~~~frll~~~l~  149 (608)
T PF10345_consen   72 ETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA-WYYAFRLLKIQLA  149 (608)
T ss_pred             HcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh-HHHHHHHHHHHHH
Confidence            34678999999999976542  2  223455667899999988888 9999999999986532211 12222223 3333


Q ss_pred             HHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCc
Q 000742           79 LRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSR  158 (1313)
Q Consensus        79 ~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~  158 (1313)
                      ...+++..|++.+ +.....+...+++.....+....+.+....        +..+.+++..+++........-.+..  
T Consensus       150 ~~~~d~~~Al~~L-~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~--------~~~~d~~~~l~~~~~~~~~~q~~~~~--  218 (608)
T PF10345_consen  150 LQHKDYNAALENL-QSIAQLANQRGDPAVFVLASLSEALLHLRR--------GSPDDVLELLQRAIAQARSLQLDPSV--  218 (608)
T ss_pred             HhcccHHHHHHHH-HHHHHHhhhcCCHHHHHHHHHHHHHHHhcC--------CCchhHHHHHHHHHHHHhhcccCCCC--
Confidence            3337999999999 999999987788776666666666666544        77888999999998877765111110  


Q ss_pred             chhhHHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHhHhhhhccCC---------------------------------
Q 000742          159 SSFLKEYIDAHNNIGM--LQMELDNLEEAKKFLIRGLEICNEEEVSE---------------------------------  203 (1313)
Q Consensus       159 ~~~~p~~~~~~~~la~--~y~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------------------  203 (1313)
                         .+....++..+-.  ++...|+++.+...+++.-...++.....                                 
T Consensus       219 ---~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~  295 (608)
T PF10345_consen  219 ---HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLP  295 (608)
T ss_pred             ---CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecC
Confidence               1223334444433  45667777777666555444433321100                                 


Q ss_pred             CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc---hh-----------------hhHHHHHHHHHHHHHHhc
Q 000742          204 DDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIE---HC-----------------QGEAKGYINLGELHYRVQ  263 (1313)
Q Consensus       204 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~---~~-----------------~~~~~~~~~la~~~~~~g  263 (1313)
                      .....+.+|..-|..+...+..++|.++++++++..++..   ..                 ......++..+....-.+
T Consensus       296 ~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~  375 (608)
T PF10345_consen  296 KEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRG  375 (608)
T ss_pred             HHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCc
Confidence            0112344566667788888888899999999999987654   00                 112334566677778899


Q ss_pred             CHHHHHHHHHHHHHHHHHccCh--hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHH
Q 000742          264 KYDEAILCYQKALNLAQSMEDE--DALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNA  341 (1313)
Q Consensus       264 ~~~~A~~~~~kal~~~~~~~~~--~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~  341 (1313)
                      ++.+|....+.+.......+..  ......+++-.|.++.+.+.++.|..++..............+...+...+.    
T Consensus       376 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila----  451 (608)
T PF10345_consen  376 DWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA----  451 (608)
T ss_pred             CHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH----
Confidence            9999999999998887655442  2223445566677777777777776666543333322222233333322111    


Q ss_pred             HHHHHHHHHHHHHH--HHH--HHHHHHHHHHHHHHhCCch--hhHHHHHHHHHHHH--HhhCHHHHHHHHHHHHHHH-HH
Q 000742          342 SLDRLIEKSSMIFA--WLK--HCEYAKRKKRIASELCDKG--KLSDSFLVIGESYQ--KLRKFNKAIKWYTKSWEMY-KS  412 (1313)
Q Consensus       342 ~l~~L~~~~~~~~~--~~~--A~~~~~~a~~i~~~~~~~~--~~a~~~~~lg~~y~--~~g~~~~A~~~~~kal~l~-~~  412 (1313)
                       .-++..++.....  ..+  ..+.+++.   .+...+.+  ....++..+-.++.  ..-...++..++.++++.. ..
T Consensus       452 -~LNl~~I~~~~~~~~~~~~~~~~l~~~i---~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~  527 (608)
T PF10345_consen  452 -ALNLAIILQYESSRDDSESELNELLEQI---EPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNK  527 (608)
T ss_pred             -HHHHHHHhHhhcccchhhhHHHHHHHhc---CccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHh
Confidence             1111122111111  000  11111111   11111111  11222222222222  2234459999999999999 77


Q ss_pred             hCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH--HHHhhHHHHHHhhcCHHHHHHHHHHHHHH
Q 000742          413 IGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLS--ALENMHYSHMIRFDNIEEARRLQHEIDKL  490 (1313)
Q Consensus       413 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~~~~--al~~L~~~~~~~~~~~~~a~~~~e~~~~l  490 (1313)
                      .++......++..++..++ .|+..++......+..++++..+.....-  +...+..-.....++.+++....+.+..+
T Consensus       528 ~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~~  606 (608)
T PF10345_consen  528 LGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDRV  606 (608)
T ss_pred             hccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence            7777777888888999988 89999999998889999988722222221  22233333234567778888877777655


Q ss_pred             H
Q 000742          491 K  491 (1313)
Q Consensus       491 ~  491 (1313)
                      +
T Consensus       607 ~  607 (608)
T PF10345_consen  607 S  607 (608)
T ss_pred             c
Confidence            4

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.78  E-value=1.7e-06  Score=87.70  Aligned_cols=243  Identities=9%  Similarity=0.038  Sum_probs=172.4

Q ss_pred             hhhHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHcc
Q 000742            5 EMQMSEAKRAYRSAKE--EGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLE   82 (1313)
Q Consensus         5 ~~~~~~A~~~l~~a~~--~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g   82 (1313)
                      .....+|.+...+...  .-+....+..|..-+..|....+|++|...+.+|.+-.+.....-+.+.+|-..|.....+.
T Consensus         6 akki~ea~e~~a~t~~~wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~   85 (308)
T KOG1585|consen    6 AKKISEADEMTALTLTRWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELS   85 (308)
T ss_pred             HHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            3455666666666554  33445566778888889999999999999999999888776666667888889999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhh
Q 000742           83 HFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFL  162 (1313)
Q Consensus        83 ~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~  162 (1313)
                      .+.++..+| ++|..++.+.+.+...+.++-.-|.+...         .++++|++.|++++.+.+.-....        
T Consensus        86 klsEvvdl~-eKAs~lY~E~GspdtAAmaleKAak~len---------v~Pd~AlqlYqralavve~~dr~~--------  147 (308)
T KOG1585|consen   86 KLSEVVDLY-EKASELYVECGSPDTAAMALEKAAKALEN---------VKPDDALQLYQRALAVVEEDDRDQ--------  147 (308)
T ss_pred             HhHHHHHHH-HHHHHHHHHhCCcchHHHHHHHHHHHhhc---------CCHHHHHHHHHHHHHHHhccchHH--------
Confidence            999999999 99999998888777666666666665532         678888999988888876543321        


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000742          163 KEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKI  242 (1313)
Q Consensus       163 p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~  242 (1313)
                       .-...+...+.++.+..+|.+|-..+.+-..+..+.   ...+.....+...-.+|....+|..|...|+...++-.-.
T Consensus       148 -ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~---~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~  223 (308)
T KOG1585|consen  148 -MAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKC---DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFL  223 (308)
T ss_pred             -HHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHH---hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcccc
Confidence             445677778888888888888888888776666554   3334445556666677777788888888888766653211


Q ss_pred             chhhhHHHHHHHHHHHHHHhcCHHHHHHHH
Q 000742          243 EHCQGEAKGYINLGELHYRVQKYDEAILCY  272 (1313)
Q Consensus       243 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  272 (1313)
                        .+....+..+|-..| ..|+.+++...+
T Consensus       224 --~sed~r~lenLL~ay-d~gD~E~~~kvl  250 (308)
T KOG1585|consen  224 --KSEDSRSLENLLTAY-DEGDIEEIKKVL  250 (308)
T ss_pred             --ChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence              124445555554443 446666655444

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.78  E-value=3.8e-06  Score=84.83  Aligned_cols=208  Identities=14%  Similarity=0.118  Sum_probs=152.0

Q ss_pred             HHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 000742           37 ILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLG  116 (1313)
Q Consensus        37 ~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg  116 (1313)
                      .+...+.|++|.+.|.+|                    |..|....++..|-..| .++-++..+.++....+..|...+
T Consensus        23 lfgg~~k~eeAadl~~~A--------------------an~yklaK~w~~AG~af-lkaA~~h~k~~skhDaat~YveA~   81 (288)
T KOG1586|consen   23 LFGGSNKYEEAAELYERA--------------------ANMYKLAKNWSAAGDAF-LKAADLHLKAGSKHDAATTYVEAA   81 (288)
T ss_pred             ccCCCcchHHHHHHHHHH--------------------HHHHHHHHhHHHHHHHH-HHHHHHHHhcCCchhHHHHHHHHH
Confidence            334455788888777766                    44455556677777777 777777777777667777778888


Q ss_pred             HHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhH
Q 000742          117 RTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMEL-DNLEEAKKFLIRGLEI  195 (1313)
Q Consensus       117 ~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~-g~~~~A~~~~~~al~~  195 (1313)
                      .+|..         .+.++|+.++++|++++...+.-.         .-+.-+..+|.+|... .++++|+.+|++|-+.
T Consensus        82 ~cykk---------~~~~eAv~cL~~aieIyt~~Grf~---------~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~  143 (288)
T KOG1586|consen   82 NCYKK---------VDPEEAVNCLEKAIEIYTDMGRFT---------MAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEY  143 (288)
T ss_pred             HHhhc---------cChHHHHHHHHHHHHHHHhhhHHH---------HHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            88754         688899999999999988776532         4456677888888765 8999999999999998


Q ss_pred             hhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHH-HHHHHHHHHHHhcCHHHHHHHHHH
Q 000742          196 CNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAK-GYINLGELHYRVQKYDEAILCYQK  274 (1313)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~k  274 (1313)
                      ++.-   +........+...|..-...++|.+|+..|++.....-.++-....+. .+..-|.+|....+.-.|...+++
T Consensus       144 yk~e---es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALek  220 (288)
T KOG1586|consen  144 YKGE---ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEK  220 (288)
T ss_pred             Hcch---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHH
Confidence            8762   223334456677778888889999999999988776544333233333 345567778888898889999999


Q ss_pred             HHHHHHHccChh
Q 000742          275 ALNLAQSMEDED  286 (1313)
Q Consensus       275 al~~~~~~~~~~  286 (1313)
                      ..+++|...+..
T Consensus       221 y~~~dP~F~dsR  232 (288)
T KOG1586|consen  221 YQELDPAFTDSR  232 (288)
T ss_pred             HHhcCCcccccH
Confidence            999998877654

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.77  E-value=2.7e-08  Score=104.83  Aligned_cols=105  Identities=26%  Similarity=0.313  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000742          164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIE  243 (1313)
Q Consensus       164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~  243 (1313)
                      ..++-+-.-|.-.+..++|++|+..|.+|+++         .|..+..|.+.|.+|.++|+|+.|++.++.|+.+.+   
T Consensus        79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l---------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp---  146 (304)
T KOG0553|consen   79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL---------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP---  146 (304)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh---
Confidence            45667777888899999999999999999999         444678999999999999999999999999999987   


Q ss_pred             hhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcc
Q 000742          244 HCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSME  283 (1313)
Q Consensus       244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~  283 (1313)
                         ...++|..||.+|..+|++++|++.|++|+++.|...
T Consensus       147 ---~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne  183 (304)
T KOG0553|consen  147 ---HYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE  183 (304)
T ss_pred             ---HHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence               8999999999999999999999999999999998765

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.76  E-value=1.9e-07  Score=115.36  Aligned_cols=169  Identities=9%  Similarity=-0.073  Sum_probs=145.3

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHH
Q 000742           30 WANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQ  109 (1313)
Q Consensus        30 ~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a  109 (1313)
                      .+.++-.+....+....+...+-+++.+...+   ++...++..+|.+....|.+++|...+ +.+++++|+..      
T Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~La~i~~~~g~~~ea~~~l-~~~~~~~Pd~~------  120 (694)
T PRK15179         51 LLQQARQVLERHAAVHKPAAALPELLDYVRRY---PHTELFQVLVARALEAAHRSDEGLAVW-RGIHQRFPDSS------  120 (694)
T ss_pred             HHHHHHHHHHHhhhhcchHhhHHHHHHHHHhc---cccHHHHHHHHHHHHHcCCcHHHHHHH-HHHHhhCCCcH------
Confidence            35555666667777777777777777776544   555899999999999999999999999 99999998764      


Q ss_pred             HHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000742          110 RACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFL  189 (1313)
Q Consensus       110 ~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~  189 (1313)
                      .+..+++.+...+        +++++|...+++++..               .|+.+.+++.+|.++.+.|++++|+..|
T Consensus       121 ~a~~~~a~~L~~~--------~~~eeA~~~~~~~l~~---------------~p~~~~~~~~~a~~l~~~g~~~~A~~~y  177 (694)
T PRK15179        121 EAFILMLRGVKRQ--------QGIEAGRAEIELYFSG---------------GSSSAREILLEAKSWDEIGQSEQADACF  177 (694)
T ss_pred             HHHHHHHHHHHHh--------ccHHHHHHHHHHHhhc---------------CCCCHHHHHHHHHHHHHhcchHHHHHHH
Confidence            5778999999988        9999999999999988               4566899999999999999999999999


Q ss_pred             HHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742          190 IRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK  240 (1313)
Q Consensus       190 ~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~  240 (1313)
                      ++++.-         .+....++..+|.++...|+.++|...|++|++...
T Consensus       178 ~~~~~~---------~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~  219 (694)
T PRK15179        178 ERLSRQ---------HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG  219 (694)
T ss_pred             HHHHhc---------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence            999984         334578999999999999999999999999999864

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.75  E-value=6e-08  Score=85.43  Aligned_cols=77  Identities=22%  Similarity=0.346  Sum_probs=67.8

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742          162 LKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK  240 (1313)
Q Consensus       162 ~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~  240 (1313)
                      +|..+.++.++|.+|..+|+|++|+.+|++++++....  +.+.+..+.++.++|.+|..+|++++|++++++|+++.+
T Consensus         1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~   77 (78)
T PF13424_consen    1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQL--GDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE   77 (78)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT--TTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            36789999999999999999999999999999996554  334556799999999999999999999999999999876

...

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.75  E-value=1.5e-07  Score=91.42  Aligned_cols=104  Identities=12%  Similarity=0.080  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000742          163 KEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKI  242 (1313)
Q Consensus       163 p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~  242 (1313)
                      ++..+..+.+|..++..|++++|...|+-...+         ++.....|++||.++..+|+|++|+..|.+|+.+.+  
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~---------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~--  100 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY---------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI--  100 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--
Confidence            356788899999999999999999999999888         666789999999999999999999999999999976  


Q ss_pred             chhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 000742          243 EHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQS  281 (1313)
Q Consensus       243 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~  281 (1313)
                          +.+..++++|.+|...|+.+.|++.|+.|+.....
T Consensus       101 ----ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~  135 (157)
T PRK15363        101 ----DAPQAPWAAAECYLACDNVCYAIKALKAVVRICGE  135 (157)
T ss_pred             ----CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence                88999999999999999999999999999999843

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.75  E-value=2e-09  Score=108.70  Aligned_cols=115  Identities=23%  Similarity=0.185  Sum_probs=39.1

Q ss_pred             HHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHH
Q 000742         1024 QLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGA 1103 (1313)
Q Consensus      1024 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~ 1103 (1313)
                      .......+++|+|++|.|+..      +.+...+.+|+.|+|++|.|+..      ..+..++.|++|++++|.|+..+.
T Consensus        14 ~~~n~~~~~~L~L~~n~I~~I------e~L~~~l~~L~~L~Ls~N~I~~l------~~l~~L~~L~~L~L~~N~I~~i~~   81 (175)
T PF14580_consen   14 QYNNPVKLRELNLRGNQISTI------ENLGATLDKLEVLDLSNNQITKL------EGLPGLPRLKTLDLSNNRISSISE   81 (175)
T ss_dssp             ----------------------------S--TT-TT--EEE-TTS--S--------TT----TT--EEE--SS---S-CH
T ss_pred             ccccccccccccccccccccc------cchhhhhcCCCEEECCCCCCccc------cCccChhhhhhcccCCCCCCcccc
Confidence            333334577777777777542      22222235788888888888765      235567888899999998876532


Q ss_pred             HHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEccCCCCChh
Q 000742         1104 NALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKEL 1158 (1313)
Q Consensus      1104 ~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~ 1158 (1313)
                       .+...+.    +|++|+|++|+|.+.+   -...+..+++|+.|+|.+|.+++.
T Consensus        82 -~l~~~lp----~L~~L~L~~N~I~~l~---~l~~L~~l~~L~~L~L~~NPv~~~  128 (175)
T PF14580_consen   82 -GLDKNLP----NLQELYLSNNKISDLN---ELEPLSSLPKLRVLSLEGNPVCEK  128 (175)
T ss_dssp             -HHHHH-T----T--EEE-TTS---SCC---CCGGGGG-TT--EEE-TT-GGGGS
T ss_pred             -chHHhCC----cCCEEECcCCcCCChH---HhHHHHcCCCcceeeccCCcccch
Confidence             2322232    4889999999887543   124577888999999999988765

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.74  E-value=1.7e-09  Score=111.90  Aligned_cols=107  Identities=22%  Similarity=0.224  Sum_probs=59.5

Q ss_pred             cCCCccEEEccCCCCCh--HHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEccCCCCChh-hh
Q 000742         1084 LVHGILELNLGGNPIMK--EGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKEL-TL 1160 (1313)
Q Consensus      1084 ~~~~L~~L~Ls~N~i~~--~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~-~~ 1160 (1313)
                      ....|++||||+|.|+.  +.+.    ++.    .++.|++|+|.|...      ..+..+++|+.||||+|.++.. |+
T Consensus       282 TWq~LtelDLS~N~I~~iDESvK----L~P----kir~L~lS~N~i~~v------~nLa~L~~L~~LDLS~N~Ls~~~Gw  347 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQIDESVK----LAP----KLRRLILSQNRIRTV------QNLAELPQLQLLDLSGNLLAECVGW  347 (490)
T ss_pred             hHhhhhhccccccchhhhhhhhh----hcc----ceeEEeccccceeee------hhhhhcccceEeecccchhHhhhhh
Confidence            34556667777776652  2221    111    367777777776632      2356666777777777766654 55


Q ss_pred             hhhcccccccCCcccccccccccccccccccccccccCCCCcccccccCCccchhhhc
Q 000742         1161 QQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESA 1218 (1313)
Q Consensus      1161 ~~~l~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 1218 (1313)
                      ..-+-++..+.|.+|.+.++.              .+..+=+|..||+++|+|..+..
T Consensus       348 h~KLGNIKtL~La~N~iE~LS--------------GL~KLYSLvnLDl~~N~Ie~lde  391 (490)
T KOG1259|consen  348 HLKLGNIKTLKLAQNKIETLS--------------GLRKLYSLVNLDLSSNQIEELDE  391 (490)
T ss_pred             HhhhcCEeeeehhhhhHhhhh--------------hhHhhhhheeccccccchhhHHH
Confidence            444444445555555444422              13344566777777777765533

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.74  E-value=1.5e-06  Score=92.23  Aligned_cols=184  Identities=16%  Similarity=0.144  Sum_probs=129.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhch
Q 000742          165 YIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEH  244 (1313)
Q Consensus       165 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~  244 (1313)
                      .+..++..|..++..|+|.+|+..|++.+..++.      .+....+.+.+|.+|+..|++++|+..+++.+...|.   
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~------s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~---   74 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN------SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN---   74 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT---
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---
Confidence            3678889999999999999999999999998765      5667788999999999999999999999999988874   


Q ss_pred             hhhHHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000742          245 CQGEAKGYINLGELHYRVQ-----------KYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEE  313 (1313)
Q Consensus       245 ~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~  313 (1313)
                      ++....+++.+|.+++.+.           ...+|+..|+..++..|+..-...              |...+.      
T Consensus        75 ~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~--------------A~~~l~------  134 (203)
T PF13525_consen   75 SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEE--------------AKKRLA------  134 (203)
T ss_dssp             -TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHH--------------HHHHHH------
T ss_pred             CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHH--------------HHHHHH------
Confidence            4456778888888876653           233566666666666555432110              000000      


Q ss_pred             HHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHh
Q 000742          314 QNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKL  393 (1313)
Q Consensus       314 ~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~  393 (1313)
                          .+                                                  .      ...+.--+.+|..|.+.
T Consensus       135 ----~l--------------------------------------------------~------~~la~~e~~ia~~Y~~~  154 (203)
T PF13525_consen  135 ----EL--------------------------------------------------R------NRLAEHELYIARFYYKR  154 (203)
T ss_dssp             ----HH--------------------------------------------------H------HHHHHHHHHHHHHHHCT
T ss_pred             ----HH--------------------------------------------------H------HHHHHHHHHHHHHHHHc
Confidence                00                                                  0      11123344589999999


Q ss_pred             hCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 000742          394 RKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGAL  440 (1313)
Q Consensus       394 g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~  440 (1313)
                      |.|..|+..++.+++-++   +.+....++..++..|.++|..+.|.
T Consensus       155 ~~y~aA~~r~~~v~~~yp---~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  155 GKYKAAIIRFQYVIENYP---DTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             T-HHHHHHHHHHHHHHST---TSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             ccHHHHHHHHHHHHHHCC---CCchHHHHHHHHHHHHHHhCChHHHH
Confidence            999999999999987665   44566778999999999999988544

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.74  E-value=0.00012  Score=84.66  Aligned_cols=222  Identities=16%  Similarity=0.190  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH------HhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742          167 DAHNNIGMLQMELDNLEEAKKFLIRG------LEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK  240 (1313)
Q Consensus       167 ~~~~~la~~y~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~  240 (1313)
                      +.|-.-|.+|.+..++++|+++|++.      ++++.-    ..+......-...|.-+...|+++.|+.+|-+|-.+.+
T Consensus       662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarf----afp~evv~lee~wg~hl~~~~q~daainhfiea~~~~k  737 (1636)
T KOG3616|consen  662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARF----AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIK  737 (1636)
T ss_pred             HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHh----hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHH
Confidence            45666677788888888888887663      443332    23444555566778888899999999999877655433


Q ss_pred             HhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742          241 KIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLT  320 (1313)
Q Consensus       241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~  320 (1313)
                      .              -.+.....+|.+|+..++..-... .....+..++.-|.+.|++..|...|.++.          
T Consensus       738 a--------------ieaai~akew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e~~----------  792 (1636)
T KOG3616|consen  738 A--------------IEAAIGAKEWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTEAD----------  792 (1636)
T ss_pred             H--------------HHHHhhhhhhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHhcc----------
Confidence            1              123334456677766655432221 112233445555666666666666555442          


Q ss_pred             HHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHH
Q 000742          321 RNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAI  400 (1313)
Q Consensus       321 ~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~  400 (1313)
                                           .......+|...+.|..|.++.++.       ..+......|...+.-....|+|.+|.
T Consensus       793 ---------------------~~~dai~my~k~~kw~da~kla~e~-------~~~e~t~~~yiakaedldehgkf~eae  844 (1636)
T KOG3616|consen  793 ---------------------LFKDAIDMYGKAGKWEDAFKLAEEC-------HGPEATISLYIAKAEDLDEHGKFAEAE  844 (1636)
T ss_pred             ---------------------hhHHHHHHHhccccHHHHHHHHHHh-------cCchhHHHHHHHhHHhHHhhcchhhhh
Confidence                                 2333344555556666665544433       223334455555555555556555555


Q ss_pred             HHH------HHHHHHHHHhCC------------chhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000742          401 KWY------TKSWEMYKSIGN------------LEGQALAKVNMGNVLDSNGDWAGALDAFQE  445 (1313)
Q Consensus       401 ~~~------~kal~l~~~~~~------------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~k  445 (1313)
                      ..|      .+|++++...+-            ......+...+|.-|...|+.+.|...|-+
T Consensus       845 qlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~fle  907 (1636)
T KOG3616|consen  845 QLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLE  907 (1636)
T ss_pred             heeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence            444      234444443221            112234566777777777776666555544

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.73  E-value=3.4e-06  Score=85.64  Aligned_cols=192  Identities=13%  Similarity=0.146  Sum_probs=162.0

Q ss_pred             CchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHH
Q 000742           66 HLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMK  145 (1313)
Q Consensus        66 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~  145 (1313)
                      ..+..|..-+.+|....+|++|...+ .+|.+-...+......+.+|-..|.....+        ..+.++..+|++|..
T Consensus        29 gaas~yekAAvafRnAk~feKakdcL-lkA~~~yEnnrslfhAAKayEqaamLake~--------~klsEvvdl~eKAs~   99 (308)
T KOG1585|consen   29 GAASLYEKAAVAFRNAKKFEKAKDCL-LKASKGYENNRSLFHAAKAYEQAAMLAKEL--------SKLSEVVDLYEKASE   99 (308)
T ss_pred             hhHHHHHHHHHHHHhhccHHHHHHHH-HHHHHHHHhcccHHHHHHHHHHHHHHHHHH--------HHhHHHHHHHHHHHH
Confidence            34667777889999999999999999 999999999998888899999999998888        999999999999999


Q ss_pred             HHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCH
Q 000742          146 LAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMW  225 (1313)
Q Consensus       146 l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~  225 (1313)
                      ++.+.+...          .+..-...|--.....+.++|+..|++++.+.++-   +...+....+...++++.+...|
T Consensus       100 lY~E~Gspd----------tAAmaleKAak~lenv~Pd~AlqlYqralavve~~---dr~~ma~el~gk~sr~lVrl~kf  166 (308)
T KOG1585|consen  100 LYVECGSPD----------TAAMALEKAAKALENVKPDDALQLYQRALAVVEED---DRDQMAFELYGKCSRVLVRLEKF  166 (308)
T ss_pred             HHHHhCCcc----------hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHhhhHhhhhHHh
Confidence            999887664          23333344444556689999999999999998772   44556677788899999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 000742          226 DKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLA  279 (1313)
Q Consensus       226 ~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~  279 (1313)
                      ++|-..+.+-..+..+..........+...-.+|....+|..|..+++..-++.
T Consensus       167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip  220 (308)
T KOG1585|consen  167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP  220 (308)
T ss_pred             hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence            999999999988888877777777888888888888999999999999877654

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.71  E-value=2.5e-06  Score=92.67  Aligned_cols=187  Identities=12%  Similarity=-0.011  Sum_probs=137.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchh
Q 000742          166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHC  245 (1313)
Q Consensus       166 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~  245 (1313)
                      +..++..|..+...|+|++|++.|++.+...+.      .+....+.+.+|.+|+..+++++|+.++++.++..|.   +
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~------s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~---~  102 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPF------GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT---H  102 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC---C
Confidence            456778888889999999999999999998665      5667778899999999999999999999999999874   4


Q ss_pred             hhHHHHHHHHHHHHHHhc---------------C---HHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHH
Q 000742          246 QGEAKGYINLGELHYRVQ---------------K---YDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMD  307 (1313)
Q Consensus       246 ~~~~~~~~~la~~~~~~g---------------~---~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~  307 (1313)
                      +....+++.+|.++...+               +   ..+|+..+++.++..|+..-..              +|...+.
T Consensus       103 ~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~--------------~A~~rl~  168 (243)
T PRK10866        103 PNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTT--------------DATKRLV  168 (243)
T ss_pred             CchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHH--------------HHHHHHH
Confidence            566788888888765443               1   2355566666666655432110              0000000


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHH
Q 000742          308 ELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIG  387 (1313)
Q Consensus       308 ~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg  387 (1313)
                                .+                                                  .      ...+.--..+|
T Consensus       169 ----------~l--------------------------------------------------~------~~la~~e~~ia  182 (243)
T PRK10866        169 ----------FL--------------------------------------------------K------DRLAKYELSVA  182 (243)
T ss_pred             ----------HH--------------------------------------------------H------HHHHHHHHHHH
Confidence                      00                                                  0      01113334589


Q ss_pred             HHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000742          388 ESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQ  444 (1313)
Q Consensus       388 ~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~  444 (1313)
                      ..|.+.|.|..|+.-++.+++-++   +.+....+++.++.+|...|..++|..+..
T Consensus       183 ~~Y~~~~~y~AA~~r~~~v~~~Yp---~t~~~~eal~~l~~ay~~lg~~~~a~~~~~  236 (243)
T PRK10866        183 EYYTKRGAYVAVVNRVEQMLRDYP---DTQATRDALPLMENAYRQLQLNAQADKVAK  236 (243)
T ss_pred             HHHHHcCchHHHHHHHHHHHHHCC---CCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            999999999999999999887665   445678889999999999999999987654

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.71  E-value=4.7e-07  Score=98.28  Aligned_cols=194  Identities=10%  Similarity=0.005  Sum_probs=145.4

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHH
Q 000742           28 ARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVE  107 (1313)
Q Consensus        28 a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~  107 (1313)
                      +..++..|..++..|+|++|++.|++.+...+.   .+....+.+.+|.+|+..++|++|+.++ ++.++..|+.+..  
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~---s~~a~~a~l~la~ayy~~~~y~~A~~~~-e~fi~~~P~~~~~--  105 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPF---GPYSQQVQLDLIYAYYKNADLPLAQAAI-DRFIRLNPTHPNI--  105 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHhCcCCCch--
Confidence            444788999999999999999999999987743   2444567899999999999999999999 9999999988765  


Q ss_pred             HHHHHHHHHHHHHHHh----------ccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCc--chhhHHHHHHHHHHHHH
Q 000742          108 QQRACTQLGRTYYEMF----------LRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSR--SSFLKEYIDAHNNIGML  175 (1313)
Q Consensus       108 ~a~a~~~lg~~y~~l~----------~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~--~~~~p~~~~~~~~la~~  175 (1313)
                       ..+++.+|.++..+.          .....+.....+|+..|++.++.+++..-.+....  ......++.--..+|..
T Consensus       106 -~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~  184 (243)
T PRK10866        106 -DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEY  184 (243)
T ss_pred             -HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             477888888764441          11223444456777777777666443211100000  01122345556678899


Q ss_pred             HHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000742          176 QMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQ  234 (1313)
Q Consensus       176 y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~k  234 (1313)
                      |.+.|.|..|+.-++.+++.++.      .+....++..++..|..+|..++|..+...
T Consensus       185 Y~~~~~y~AA~~r~~~v~~~Yp~------t~~~~eal~~l~~ay~~lg~~~~a~~~~~~  237 (243)
T PRK10866        185 YTKRGAYVAVVNRVEQMLRDYPD------TQATRDALPLMENAYRQLQLNAQADKVAKI  237 (243)
T ss_pred             HHHcCchHHHHHHHHHHHHHCCC------CchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            99999999999999999998776      566788999999999999999999876643

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.70  E-value=2e-07  Score=96.66  Aligned_cols=179  Identities=20%  Similarity=0.187  Sum_probs=144.5

Q ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHH
Q 000742           10 EAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALI   89 (1313)
Q Consensus        10 ~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~   89 (1313)
                      .+...+-......|....+   ..++..+...|+-+.+..+..++....+      .....+..+|......|+|.+|+.
T Consensus        51 ~a~~al~~~~~~~p~d~~i---~~~a~a~~~~G~a~~~l~~~~~~~~~~~------~d~~ll~~~gk~~~~~g~~~~A~~  121 (257)
T COG5010          51 GAAAALGAAVLRNPEDLSI---AKLATALYLRGDADSSLAVLQKSAIAYP------KDRELLAAQGKNQIRNGNFGEAVS  121 (257)
T ss_pred             HHHHHHHHHHhcCcchHHH---HHHHHHHHhcccccchHHHHhhhhccCc------ccHHHHHHHHHHHHHhcchHHHHH
Confidence            3444455555555655444   6888999999999999988887655442      224556669999999999999999


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHH
Q 000742           90 YQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAH  169 (1313)
Q Consensus        90 ~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~  169 (1313)
                      .+ +++..+.|...      ++|..+|.+|.+.        |+++.|...|.+|+++.               |..+.++
T Consensus       122 ~~-rkA~~l~p~d~------~~~~~lgaaldq~--------Gr~~~Ar~ay~qAl~L~---------------~~~p~~~  171 (257)
T COG5010         122 VL-RKAARLAPTDW------EAWNLLGAALDQL--------GRFDEARRAYRQALELA---------------PNEPSIA  171 (257)
T ss_pred             HH-HHHhccCCCCh------hhhhHHHHHHHHc--------cChhHHHHHHHHHHHhc---------------cCCchhh
Confidence            99 99999887654      6789999999998        99999999999999993               3446799


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000742          170 NNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDI  236 (1313)
Q Consensus       170 ~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal  236 (1313)
                      .|+|..|+-.|+++.|..++.++...         ......+..+++.+....|++++|.....+-+
T Consensus       172 nNlgms~~L~gd~~~A~~lll~a~l~---------~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~  229 (257)
T COG5010         172 NNLGMSLLLRGDLEDAETLLLPAYLS---------PAADSRVRQNLALVVGLQGDFREAEDIAVQEL  229 (257)
T ss_pred             hhHHHHHHHcCCHHHHHHHHHHHHhC---------CCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence            99999999999999999999999776         33356788999999999999999987765543

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.70  E-value=3e-06  Score=86.96  Aligned_cols=196  Identities=14%  Similarity=0.028  Sum_probs=147.5

Q ss_pred             hCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 000742           41 RGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYY  120 (1313)
Q Consensus        41 ~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~  120 (1313)
                      ..+.++-++.....+...+...-.+..+..|-....+....|+.+-|..++ ++....+|...      +.-..-|..+.
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~-~~L~~~fp~S~------RV~~lkam~lE   97 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCI-NQLRDRFPGSK------RVGKLKAMLLE   97 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHhCCCCh------hHHHHHHHHHH
Confidence            345666777777776666554344556778888888888999999999999 87776665443      22333444454


Q ss_pred             HHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhc
Q 000742          121 EMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEE  200 (1313)
Q Consensus       121 ~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~  200 (1313)
                      ..        |.+++|+++|+..++-               .|....++-..-.+...+|+--+|++.+.+.++.+..  
T Consensus        98 a~--------~~~~~A~e~y~~lL~d---------------dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~--  152 (289)
T KOG3060|consen   98 AT--------GNYKEAIEYYESLLED---------------DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN--  152 (289)
T ss_pred             Hh--------hchhhHHHHHHHHhcc---------------CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC--
Confidence            44        7788888887766543               2334455556666677789999999999999988654  


Q ss_pred             cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHH
Q 000742          201 VSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQ---KYDEAILCYQKALN  277 (1313)
Q Consensus       201 ~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~kal~  277 (1313)
                             ...+|..++.+|...|+|++|.-++++.+-+.|      .....+..+|.+++-+|   +++-|.+||.+|++
T Consensus       153 -------D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P------~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk  219 (289)
T KOG3060|consen  153 -------DQEAWHELAEIYLSEGDFEKAAFCLEELLLIQP------FNPLYFQRLAEVLYTQGGAENLELARKYYERALK  219 (289)
T ss_pred             -------cHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence                   467999999999999999999999999998866      67777788888887766   56789999999999


Q ss_pred             HHHH
Q 000742          278 LAQS  281 (1313)
Q Consensus       278 ~~~~  281 (1313)
                      +.+.
T Consensus       220 l~~~  223 (289)
T KOG3060|consen  220 LNPK  223 (289)
T ss_pred             hChH
Confidence            9884

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.70  E-value=1.5e-07  Score=93.22  Aligned_cols=108  Identities=11%  Similarity=0.105  Sum_probs=96.4

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000742          162 LKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKK  241 (1313)
Q Consensus       162 ~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~  241 (1313)
                      .|....+...+|..+...|++++|+..+++++...         +....++..+|.+|...|++++|+.++++++.+.+ 
T Consensus        13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-   82 (135)
T TIGR02552        13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD---------PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-   82 (135)
T ss_pred             ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC---------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-
Confidence            45667889999999999999999999999998873         33568899999999999999999999999999865 


Q ss_pred             hchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccC
Q 000742          242 IEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMED  284 (1313)
Q Consensus       242 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~  284 (1313)
                           .....++.+|.+|...|++++|+.+++++++..|....
T Consensus        83 -----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        83 -----DDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             -----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence                 67889999999999999999999999999999876543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.69  E-value=2.6e-07  Score=97.61  Aligned_cols=121  Identities=17%  Similarity=0.122  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHH
Q 000742          108 QQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKK  187 (1313)
Q Consensus       108 ~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~  187 (1313)
                      .+..+-.-|.-...-        ++|++|+..|.+|+++               .|..+..|.+.|.+|.++|+|+.|++
T Consensus        80 ~AE~LK~eGN~~m~~--------~~Y~eAv~kY~~AI~l---------------~P~nAVyycNRAAAy~~Lg~~~~AVk  136 (304)
T KOG0553|consen   80 LAESLKNEGNKLMKN--------KDYQEAVDKYTEAIEL---------------DPTNAVYYCNRAAAYSKLGEYEDAVK  136 (304)
T ss_pred             HHHHHHHHHHHHHHh--------hhHHHHHHHHHHHHhc---------------CCCcchHHHHHHHHHHHhcchHHHHH
Confidence            344455566666655        9999999999999998               45668899999999999999999999


Q ss_pred             HHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHH
Q 000742          188 FLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYD  266 (1313)
Q Consensus       188 ~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  266 (1313)
                      -.+.|+.+         ++....+|..||.+|..+|++++|++.|++|+++.+      .......+|..+-..+++..
T Consensus       137 Dce~Al~i---------Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP------~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  137 DCESALSI---------DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDP------DNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHHHHHhc---------ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCC------CcHHHHHHHHHHHHHhcCCC
Confidence            99999998         677899999999999999999999999999999987      44455555555554444443

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.67  E-value=2.2e-05  Score=90.48  Aligned_cols=310  Identities=14%  Similarity=0.130  Sum_probs=153.6

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHH------HHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHH-------
Q 000742           30 WANVIGDILKNRGEYVEALKWFRI------DYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHL-------   96 (1313)
Q Consensus        30 ~~~~lg~~y~~~g~~~eAl~~~~~------al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal-------   96 (1313)
                      .|-.-|.+|.+..++++|+++|++      |+++..-..| ......-...|.-+...|+++.|+.+| -.|-       
T Consensus       663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp-~evv~lee~wg~hl~~~~q~daainhf-iea~~~~kaie  740 (1636)
T KOG3616|consen  663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFP-EEVVKLEEAWGDHLEQIGQLDAAINHF-IEANCLIKAIE  740 (1636)
T ss_pred             HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCc-HHHhhHHHHHhHHHHHHHhHHHHHHHH-HHhhhHHHHHH
Confidence            455667777778888888888764      4444432211 112233345566677788888888877 3332       


Q ss_pred             ------------HHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHH
Q 000742           97 ------------ELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKE  164 (1313)
Q Consensus        97 ------------~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~  164 (1313)
                                  .+..+..|......-|-.++.-|...        |+|+.|.+.|.++-..                  
T Consensus       741 aai~akew~kai~ildniqdqk~~s~yy~~iadhyan~--------~dfe~ae~lf~e~~~~------------------  794 (1636)
T KOG3616|consen  741 AAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANK--------GDFEIAEELFTEADLF------------------  794 (1636)
T ss_pred             HHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccc--------hhHHHHHHHHHhcchh------------------
Confidence                        22222222221112222333344333        5555555554443211                  


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHH
Q 000742          165 YIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHI------EQDIII  238 (1313)
Q Consensus       165 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~------~kal~~  238 (1313)
                           ..--.+|.+.|++++|.+..++..          .+......|...+.-....|+|.+|.+.|      .+|+.+
T Consensus       795 -----~dai~my~k~~kw~da~kla~e~~----------~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqm  859 (1636)
T KOG3616|consen  795 -----KDAIDMYGKAGKWEDAFKLAEECH----------GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQM  859 (1636)
T ss_pred             -----HHHHHHHhccccHHHHHHHHHHhc----------CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHH
Confidence                 111233444455555554443331          13334555666666666667766666655      455555


Q ss_pred             HHHhchh------------hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHH
Q 000742          239 CKKIEHC------------QGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVM  306 (1313)
Q Consensus       239 ~~~~~~~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~  306 (1313)
                      +.+.+..            .....+...+|.-|...|+.+.|.+.|-+|-+.....               +.|++-+.+
T Consensus       860 ydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaav---------------nmyk~s~lw  924 (1636)
T KOG3616|consen  860 YDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAV---------------NMYKASELW  924 (1636)
T ss_pred             HHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHH---------------HHhhhhhhH
Confidence            5543211            2334566778888888888888888887765433211               112222222


Q ss_pred             HHHHHHH---------HHHHHHHHHHHHhhC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 000742          307 DELKKEE---------QNLKKLTRNMIIAKG-TSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDK  376 (1313)
Q Consensus       307 ~~a~~~~---------~~~~~l~~~l~~~~~-~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~  376 (1313)
                      +++....         +....+     .++. ..+.+..+++....+..-.........|+-|.++       + .++..
T Consensus       925 ~dayriaktegg~n~~k~v~fl-----waksiggdaavkllnk~gll~~~id~a~d~~afd~afdl-------a-ri~~k  991 (1636)
T KOG3616|consen  925 EDAYRIAKTEGGANAEKHVAFL-----WAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDL-------A-RIAAK  991 (1636)
T ss_pred             HHHHHHHhccccccHHHHHHHH-----HHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHH-------H-HHhhh
Confidence            2222110         000000     0011 1112222222211111111111222222222222       2 12233


Q ss_pred             hhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Q 000742          377 GKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMY  410 (1313)
Q Consensus       377 ~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~  410 (1313)
                      ...+.++..++..+...|++++|-++|-+|+++.
T Consensus       992 ~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen  992 DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred             ccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence            4456888999999999999999999999999764

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.66  E-value=9.9e-09  Score=103.73  Aligned_cols=126  Identities=25%  Similarity=0.268  Sum_probs=36.0

Q ss_pred             ceEEEccCCCCCHHHHHHHHhcccCCCCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHH-
Q 000742          891 DLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADAL-  969 (1313)
Q Consensus       891 l~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l-  969 (1313)
                      ++.|+|.+|.|+...  .+..   .+.+|+.|+||+|.|+..      +.+..++.|++|++++|.|+..     ...+ 
T Consensus        21 ~~~L~L~~n~I~~Ie--~L~~---~l~~L~~L~Ls~N~I~~l------~~l~~L~~L~~L~L~~N~I~~i-----~~~l~   84 (175)
T PF14580_consen   21 LRELNLRGNQISTIE--NLGA---TLDKLEVLDLSNNQITKL------EGLPGLPRLKTLDLSNNRISSI-----SEGLD   84 (175)
T ss_dssp             -----------------S--T---T-TT--EEE-TTS--S--------TT----TT--EEE--SS---S------CHHHH
T ss_pred             ccccccccccccccc--chhh---hhcCCCEEECCCCCCccc------cCccChhhhhhcccCCCCCCcc-----ccchH
Confidence            345555555554332  1111   135667777777766643      2345566677777777766642     1112 


Q ss_pred             hcCCCccEEEeCCCCCCChhhHHHHHHhhccCCccceeecCCCCCChHHHHHHHHHhhcCCccEEEc
Q 000742          970 GAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLML 1036 (1313)
Q Consensus       970 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~L 1036 (1313)
                      ..+++|++|+|++|.+-....    +..+..+++|+.|+|.+|.++....-...-+...|+|+.||-
T Consensus        85 ~~lp~L~~L~L~~N~I~~l~~----l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   85 KNLPNLQELYLSNNKISDLNE----LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             HH-TT--EEE-TTS---SCCC----CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             HhCCcCCEEECcCCcCCChHH----hHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            235667777777766322111    233445566666666666655432222222333455555553

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.57  E-value=6.4e-07  Score=104.46  Aligned_cols=198  Identities=16%  Similarity=0.178  Sum_probs=156.6

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 000742           31 ANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQR  110 (1313)
Q Consensus        31 ~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~  110 (1313)
                      +-....+|...|+..+|.....+-++.       +..+..|..+|.+.       .--.+| ++|.++.....     ++
T Consensus       427 w~~vi~CY~~lg~~~kaeei~~q~lek-------~~d~~lyc~LGDv~-------~d~s~y-EkawElsn~~s-----ar  486 (777)
T KOG1128|consen  427 WDPVILCYLLLGQHGKAEEINRQELEK-------DPDPRLYCLLGDVL-------HDPSLY-EKAWELSNYIS-----AR  486 (777)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHhcC-------CCcchhHHHhhhhc-------cChHHH-HHHHHHhhhhh-----HH
Confidence            556778888999999998888776651       22244555555554       445556 66666654432     34


Q ss_pred             HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000742          111 ACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLI  190 (1313)
Q Consensus       111 a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~  190 (1313)
                      |.+.+|...+..        ++|++|.++++.++++               .|....+|+.+|.++.+.++++.|.++|.
T Consensus       487 A~r~~~~~~~~~--------~~fs~~~~hle~sl~~---------------nplq~~~wf~~G~~ALqlek~q~av~aF~  543 (777)
T KOG1128|consen  487 AQRSLALLILSN--------KDFSEADKHLERSLEI---------------NPLQLGTWFGLGCAALQLEKEQAAVKAFH  543 (777)
T ss_pred             HHHhhccccccc--------hhHHHHHHHHHHHhhc---------------CccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence            555566655544        8999999999999998               55778999999999999999999999999


Q ss_pred             HHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHH
Q 000742          191 RGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAIL  270 (1313)
Q Consensus       191 ~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  270 (1313)
                      .++.+         .|+.+.+|.|++..|...++-.+|...+++|++...      .....+.|.-.+..+.|.+++|++
T Consensus       544 rcvtL---------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~------~~w~iWENymlvsvdvge~eda~~  608 (777)
T KOG1128|consen  544 RCVTL---------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY------QHWQIWENYMLVSVDVGEFEDAIK  608 (777)
T ss_pred             HHhhc---------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC------CCCeeeechhhhhhhcccHHHHHH
Confidence            99998         555789999999999999999999999999998753      556677788888899999999999


Q ss_pred             HHHHHHHHHHHccChh
Q 000742          271 CYQKALNLAQSMEDED  286 (1313)
Q Consensus       271 ~~~kal~~~~~~~~~~  286 (1313)
                      .|.+.+.+.....+..
T Consensus       609 A~~rll~~~~~~~d~~  624 (777)
T KOG1128|consen  609 AYHRLLDLRKKYKDDE  624 (777)
T ss_pred             HHHHHHHhhhhcccch
Confidence            9999999887766543

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.55  E-value=9.8e-06  Score=83.25  Aligned_cols=179  Identities=12%  Similarity=-0.025  Sum_probs=131.6

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHH
Q 000742           30 WANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQ  109 (1313)
Q Consensus        30 ~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a  109 (1313)
                      .|-....+....|+.+-|...+++.....+..      ..+-...|..+...|+|++|+++| +..++-.|.+.-     
T Consensus        54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S------~RV~~lkam~lEa~~~~~~A~e~y-~~lL~ddpt~~v-----  121 (289)
T KOG3060|consen   54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGS------KRVGKLKAMLLEATGNYKEAIEYY-ESLLEDDPTDTV-----  121 (289)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHHhhchhhHHHHH-HHHhccCcchhH-----
Confidence            35666677778899999999988876665332      566667889999999999999999 888875544321     


Q ss_pred             HHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000742          110 RACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFL  189 (1313)
Q Consensus       110 ~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~  189 (1313)
                       ++-.--.+...+        |+.-+|++.+.+-++.+               +...++|..++.+|...|+|++|.-.+
T Consensus       122 -~~KRKlAilka~--------GK~l~aIk~ln~YL~~F---------------~~D~EAW~eLaeiY~~~~~f~kA~fCl  177 (289)
T KOG3060|consen  122 -IRKRKLAILKAQ--------GKNLEAIKELNEYLDKF---------------MNDQEAWHELAEIYLSEGDFEKAAFCL  177 (289)
T ss_pred             -HHHHHHHHHHHc--------CCcHHHHHHHHHHHHHh---------------cCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence             222222223333        77778888777776662               345789999999999999999999999


Q ss_pred             HHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHH
Q 000742          190 IRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELR---MWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELH  259 (1313)
Q Consensus       190 ~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g---~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~  259 (1313)
                      ++.+-+         .|.....+..+|.+++.+|   +++-|.+||.+|+++.+      ....+++.+-.+-
T Consensus       178 EE~ll~---------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~------~~~ral~GI~lc~  235 (289)
T KOG3060|consen  178 EELLLI---------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP------KNLRALFGIYLCG  235 (289)
T ss_pred             HHHHHc---------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh------HhHHHHHHHHHHH
Confidence            999887         3445566777888877766   67889999999999977      4455555544433

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.55  E-value=7.1e-08  Score=100.40  Aligned_cols=195  Identities=20%  Similarity=0.223  Sum_probs=113.3

Q ss_pred             CCCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHH
Q 000742          916 FTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLL  995 (1313)
Q Consensus       916 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~  995 (1313)
                      ++.+++|||.+|.|++-  ..++.++.++|.|++|+|+.|.+... +..++   ....+|++|-|.+.. +...   ..-
T Consensus        70 ~~~v~elDL~~N~iSdW--seI~~ile~lP~l~~LNls~N~L~s~-I~~lp---~p~~nl~~lVLNgT~-L~w~---~~~  139 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDW--SEIGAILEQLPALTTLNLSCNSLSSD-IKSLP---LPLKNLRVLVLNGTG-LSWT---QST  139 (418)
T ss_pred             hhhhhhhhcccchhccH--HHHHHHHhcCccceEeeccCCcCCCc-cccCc---ccccceEEEEEcCCC-CChh---hhh
Confidence            35677777777777653  23556666777777777777766531 11111   123456666666555 2222   222


Q ss_pred             HhhccCCccceeecCCCCCChHHHHHHHHHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHH
Q 000742          996 VKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCI 1075 (1313)
Q Consensus       996 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 1075 (1313)
                      ..+..+|.+++|.+|.|+                 ++.+++..|.+.+            ..+.+.+|.+..|...--  
T Consensus       140 s~l~~lP~vtelHmS~N~-----------------~rq~n~Dd~c~e~------------~s~~v~tlh~~~c~~~~w--  188 (418)
T KOG2982|consen  140 SSLDDLPKVTELHMSDNS-----------------LRQLNLDDNCIED------------WSTEVLTLHQLPCLEQLW--  188 (418)
T ss_pred             hhhhcchhhhhhhhccch-----------------hhhhccccccccc------------cchhhhhhhcCCcHHHHH--
Confidence            333455555566555553                 3333444443332            113455666555542211  


Q ss_pred             HHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEccCCCC
Q 000742         1076 HKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNAS 1155 (1313)
Q Consensus      1076 ~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i 1155 (1313)
                      .........++++..+.+..|+|.+.....-.+    +...+..|+|+.|+|....   -.+.|.+.+.|..|.+++|.+
T Consensus       189 ~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se----~~p~~~~LnL~~~~idswa---svD~Ln~f~~l~dlRv~~~Pl  261 (418)
T KOG2982|consen  189 LNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSE----PFPSLSCLNLGANNIDSWA---SVDALNGFPQLVDLRVSENPL  261 (418)
T ss_pred             HHHHhHHhhcccchheeeecCcccchhhcccCC----CCCcchhhhhcccccccHH---HHHHHcCCchhheeeccCCcc
Confidence            112333345788888899999887654433222    2334778999999998763   456788899999999999998


Q ss_pred             Chh
Q 000742         1156 KEL 1158 (1313)
Q Consensus      1156 ~~~ 1158 (1313)
                      .+.
T Consensus       262 ~d~  264 (418)
T KOG2982|consen  262 SDP  264 (418)
T ss_pred             ccc
Confidence            875

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.51  E-value=2e-06  Score=89.43  Aligned_cols=162  Identities=14%  Similarity=0.097  Sum_probs=130.8

Q ss_pred             chhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHH
Q 000742           67 LLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKL  146 (1313)
Q Consensus        67 ~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l  146 (1313)
                      ...+ ..++..+...|+-+.+..+. .++....++..      ..+..+|......        |+|.+|+..++++..+
T Consensus        66 d~~i-~~~a~a~~~~G~a~~~l~~~-~~~~~~~~~d~------~ll~~~gk~~~~~--------g~~~~A~~~~rkA~~l  129 (257)
T COG5010          66 DLSI-AKLATALYLRGDADSSLAVL-QKSAIAYPKDR------ELLAAQGKNQIRN--------GNFGEAVSVLRKAARL  129 (257)
T ss_pred             hHHH-HHHHHHHHhcccccchHHHH-hhhhccCcccH------HHHHHHHHHHHHh--------cchHHHHHHHHHHhcc
Confidence            3555 88888899999999988888 77665544432      2233477777766        9999999999999877


Q ss_pred             HHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHH
Q 000742          147 AQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWD  226 (1313)
Q Consensus       147 ~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~  226 (1313)
                                     .|....+|+.+|.+|.+.|++++|...|.+++++...         ...+..|+|..|.-.|+++
T Consensus       130 ---------------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~---------~p~~~nNlgms~~L~gd~~  185 (257)
T COG5010         130 ---------------APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN---------EPSIANNLGMSLLLRGDLE  185 (257)
T ss_pred             ---------------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC---------CchhhhhHHHHHHHcCCHH
Confidence                           3456789999999999999999999999999999554         4568899999999999999


Q ss_pred             HHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 000742          227 KSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQK  274 (1313)
Q Consensus       227 ~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~k  274 (1313)
                      .|..++..+.....      ....+..+++.+...+|++++|.....+
T Consensus       186 ~A~~lll~a~l~~~------ad~~v~~NLAl~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         186 DAETLLLPAYLSPA------ADSRVRQNLALVVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             HHHHHHHHHHhCCC------CchHHHHHHHHHHhhcCChHHHHhhccc
Confidence            99999998877644      5678889999999999999998776554

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.51  E-value=1.1e-06  Score=90.48  Aligned_cols=135  Identities=16%  Similarity=0.085  Sum_probs=103.1

Q ss_pred             hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChH
Q 000742            6 MQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFK   85 (1313)
Q Consensus         6 ~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~   85 (1313)
                      ..+..+...+....+..+....+..++.+|.++...|++++|+..|++++.+.+.   ....+.++..+|.+|...|+++
T Consensus        13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~---~~~~~~~~~~lg~~~~~~g~~~   89 (168)
T CHL00033         13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID---PYDRSYILYNIGLIHTSNGEHT   89 (168)
T ss_pred             cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc---chhhHHHHHHHHHHHHHcCCHH
Confidence            3455666666555556666777888999999999999999999999999988532   2234568999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhcc
Q 000742           86 DALIYQVKKHLELAKDASD-LVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKE  152 (1313)
Q Consensus        86 ~A~~~~~~kal~l~~~~~~-~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~  152 (1313)
                      +|+.++ ++++.+.+.... ....+.++..+|..+..+        |+++.|+.++.+++..+++...
T Consensus        90 eA~~~~-~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~--------g~~~~A~~~~~~a~~~~~~a~~  148 (168)
T CHL00033         90 KALEYY-FQALERNPFLPQALNNMAVICHYRGEQAIEQ--------GDSEIAEAWFDQAAEYWKQAIA  148 (168)
T ss_pred             HHHHHH-HHHHHhCcCcHHHHHHHHHHHHHhhHHHHHc--------ccHHHHHHHHHHHHHHHHHHHH
Confidence            999999 999998665432 122334444555554466        8999999999999988777543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.49  E-value=3.8e-06  Score=86.84  Aligned_cols=98  Identities=19%  Similarity=0.168  Sum_probs=78.1

Q ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHH
Q 000742           15 YRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKK   94 (1313)
Q Consensus        15 l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~k   94 (1313)
                      +......++....+..++.+|..|...|++++|+.+|++++.+.+..   .....++..+|.+|...|++++|+.++ ++
T Consensus        22 ~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~-~~   97 (172)
T PRK02603         22 ILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP---NDRSYILYNMGIIYASNGEHDKALEYY-HQ   97 (172)
T ss_pred             HHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc---chHHHHHHHHHHHHHHcCCHHHHHHHH-HH
Confidence            34445556677778889999999999999999999999999876432   223578999999999999999999999 99


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 000742           95 HLELAKDASDLVEQQRACTQLGRTYYEM  122 (1313)
Q Consensus        95 al~l~~~~~~~~~~a~a~~~lg~~y~~l  122 (1313)
                      ++...+..      ..++..+|.+|..+
T Consensus        98 al~~~p~~------~~~~~~lg~~~~~~  119 (172)
T PRK02603         98 ALELNPKQ------PSALNNIAVIYHKR  119 (172)
T ss_pred             HHHhCccc------HHHHHHHHHHHHHc
Confidence            99986654      24567778888766

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.48  E-value=2.2e-06  Score=83.34  Aligned_cols=100  Identities=12%  Similarity=0.028  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000742          109 QRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKF  188 (1313)
Q Consensus       109 a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~  188 (1313)
                      ....+.+|..++..        |++++|+..|+-...+               .|..+..|++||.++..+|+|++|+..
T Consensus        35 l~~lY~~A~~ly~~--------G~l~~A~~~f~~L~~~---------------Dp~~~~y~~gLG~~~Q~~g~~~~AI~a   91 (157)
T PRK15363         35 LNTLYRYAMQLMEV--------KEFAGAARLFQLLTIY---------------DAWSFDYWFRLGECCQAQKHWGEAIYA   91 (157)
T ss_pred             HHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHh---------------CcccHHHHHHHHHHHHHHhhHHHHHHH
Confidence            35567888888877        9999999999999887               567899999999999999999999999


Q ss_pred             HHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742          189 LIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK  240 (1313)
Q Consensus       189 ~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~  240 (1313)
                      |.+|+.+.         +..++.++++|.+|...|+.+.|++.|+.|+..+.
T Consensus        92 Y~~A~~L~---------~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363         92 YGRAAQIK---------IDAPQAPWAAAECYLACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             HHHHHhcC---------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence            99999983         34678999999999999999999999999999983

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.48  E-value=1.8e-06  Score=88.95  Aligned_cols=112  Identities=14%  Similarity=-0.011  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000742          164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIE  243 (1313)
Q Consensus       164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~  243 (1313)
                      ..+..++.+|.++...|++++|+..|++++.+.+.      +...+.++.++|.+|...|++++|+.++++++.+.+...
T Consensus        33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~------~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~  106 (168)
T CHL00033         33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID------PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLP  106 (168)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence            56889999999999999999999999999988432      344567999999999999999999999999999865321


Q ss_pred             h-hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 000742          244 H-CQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQS  281 (1313)
Q Consensus       244 ~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~  281 (1313)
                      . ....+.++..+|..+..+|+++.|+.++++++.....
T Consensus       107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~  145 (168)
T CHL00033        107 QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQ  145 (168)
T ss_pred             HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHH
Confidence            1 1223334444444444889999888888888776554

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.48  E-value=6.8e-05  Score=76.00  Aligned_cols=205  Identities=15%  Similarity=0.133  Sum_probs=136.8

Q ss_pred             cCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHH
Q 000742          179 LDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGEL  258 (1313)
Q Consensus       179 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~  258 (1313)
                      .+++++|.+.|.+|-.                       .|...++|..|-..|.++.+...+.++..+.+..|...+.+
T Consensus        27 ~~k~eeAadl~~~Aan-----------------------~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~c   83 (288)
T KOG1586|consen   27 SNKYEEAAELYERAAN-----------------------MYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANC   83 (288)
T ss_pred             CcchHHHHHHHHHHHH-----------------------HHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence            3577777777766644                       44455677788888888888888877777888888888888


Q ss_pred             HHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHH
Q 000742          259 HYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQ  338 (1313)
Q Consensus       259 ~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~  338 (1313)
                      |.+. ++++|+.++++++++..+++... ..+..+..++.+++                                     
T Consensus        84 ykk~-~~~eAv~cL~~aieIyt~~Grf~-~aAk~~~~iaEiyE-------------------------------------  124 (288)
T KOG1586|consen   84 YKKV-DPEEAVNCLEKAIEIYTDMGRFT-MAAKHHIEIAEIYE-------------------------------------  124 (288)
T ss_pred             hhcc-ChHHHHHHHHHHHHHHHhhhHHH-HHHhhhhhHHHHHh-------------------------------------
Confidence            8765 99999999999999887654321 11222222222221                                     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCC-ch
Q 000742          339 QNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGN-LE  417 (1313)
Q Consensus       339 ~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~-~~  417 (1313)
                                  ....++++|+.+|+++-+.++.-.....--..+...|..-...++|.+|+..|++.....-...- ..
T Consensus       125 ------------sdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy  192 (288)
T KOG1586|consen  125 ------------SDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY  192 (288)
T ss_pred             ------------hhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence                        12356667777777777766554444444467777888888899999999999987643221111 11


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChh
Q 000742          418 GQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPS  457 (1313)
Q Consensus       418 ~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~  457 (1313)
                      ..-.-++.-|.++....+.-.|...+++..++.....+.+
T Consensus       193 s~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR  232 (288)
T KOG1586|consen  193 SAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR  232 (288)
T ss_pred             HHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence            2223355677888888898888888888777665544443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.45  E-value=1.1e-06  Score=86.97  Aligned_cols=112  Identities=17%  Similarity=0.130  Sum_probs=97.3

Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHH
Q 000742           13 RAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQV   92 (1313)
Q Consensus        13 ~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~   92 (1313)
                      ..|+++++..|....+  .+.+|..++..|++++|+..|++++...+      ....++..+|.+|..+|++++|..++ 
T Consensus         4 ~~~~~~l~~~p~~~~~--~~~~a~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~-   74 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQ--IYALAYNLYQQGRYDEALKLFQLLAAYDP------YNSRYWLGLAACCQMLKEYEEAIDAY-   74 (135)
T ss_pred             hhHHHHHcCChhhHHH--HHHHHHHHHHcccHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            3577888888887655  88999999999999999999999988753      23789999999999999999999999 


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHH
Q 000742           93 KKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLA  147 (1313)
Q Consensus        93 ~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~  147 (1313)
                      ++++++.+...      ..++.+|.+|...        |++++|+.+|++++++.
T Consensus        75 ~~~~~~~p~~~------~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~  115 (135)
T TIGR02552        75 ALAAALDPDDP------RPYFHAAECLLAL--------GEPESALKALDLAIEIC  115 (135)
T ss_pred             HHHHhcCCCCh------HHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhc
Confidence            99999876543      4678999999988        99999999999999883

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.44  E-value=2.1e-06  Score=88.74  Aligned_cols=105  Identities=19%  Similarity=0.146  Sum_probs=83.2

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000742          162 LKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKK  241 (1313)
Q Consensus       162 ~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~  241 (1313)
                      .+..+.+++.+|..|...|++++|+.+|+++++..+.      .+....++.++|.+|...|++++|+.++++++.+.+ 
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-  103 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEED------PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-  103 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc------cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-
Confidence            3467889999999999999999999999999987443      333567899999999999999999999999999866 


Q ss_pred             hchhhhHHHHHHHHHHHHHHhcC-------HHHHHHHHHHHHHH
Q 000742          242 IEHCQGEAKGYINLGELHYRVQK-------YDEAILCYQKALNL  278 (1313)
Q Consensus       242 ~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~kal~~  278 (1313)
                           .....+..+|.+|...|+       +++|+..+++|++.
T Consensus       104 -----~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~  142 (172)
T PRK02603        104 -----KQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEY  142 (172)
T ss_pred             -----ccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHH
Confidence                 456677778888877666       44444444444443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.42  E-value=1.3e-06  Score=101.25  Aligned_cols=101  Identities=14%  Similarity=0.199  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhH
Q 000742          169 HNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGE  248 (1313)
Q Consensus       169 ~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~  248 (1313)
                      +...|..++..|+|++|+.+|.+|+++.+         ....++.++|.+|..+|++++|+..+++++.+.+      ..
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P---------~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P------~~   69 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDP---------NNAELYADRAQANIKLGNFTEAVADANKAIELDP------SL   69 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------CC
Confidence            45567888889999999999999999843         3567899999999999999999999999999976      77


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccC
Q 000742          249 AKGYINLGELHYRVQKYDEAILCYQKALNLAQSMED  284 (1313)
Q Consensus       249 ~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~  284 (1313)
                      +.+|+.+|.+|+.+|+|++|+.+|++++++.+....
T Consensus        70 ~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~  105 (356)
T PLN03088         70 AKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSR  105 (356)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence            889999999999999999999999999999886543

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.40  E-value=1.2e-06  Score=78.22  Aligned_cols=84  Identities=15%  Similarity=0.223  Sum_probs=69.1

Q ss_pred             chhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742            4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH   83 (1313)
Q Consensus         4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~   83 (1313)
                      ++++++.|+..++++++..|.......++.+|.+|+..|+|++|+.++++ .+..+..      ....+.+|.++..+|+
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~------~~~~~l~a~~~~~l~~   73 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN------PDIHYLLARCLLKLGK   73 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH------HHHHHHHHHHHHHTT-
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC------HHHHHHHHHHHHHhCC
Confidence            46899999999999999988532555577899999999999999999998 5555322      6777888999999999


Q ss_pred             hHHHHHHHHHHH
Q 000742           84 FKDALIYQVKKH   95 (1313)
Q Consensus        84 ~~~A~~~~~~ka   95 (1313)
                      |++|++.+ +++
T Consensus        74 y~eAi~~l-~~~   84 (84)
T PF12895_consen   74 YEEAIKAL-EKA   84 (84)
T ss_dssp             HHHHHHHH-HHH
T ss_pred             HHHHHHHH-hcC
Confidence            99999999 765

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.39  E-value=2e-06  Score=82.97  Aligned_cols=108  Identities=12%  Similarity=0.106  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchh
Q 000742          166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHC  245 (1313)
Q Consensus       166 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~  245 (1313)
                      +.+++.+|..+...|++++|++.|.+++...+.      .+....+++.+|.++...|++++|+.+|++++...+.   .
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~   72 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPK------STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK---S   72 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC---C
Confidence            357899999999999999999999999987433      3344678899999999999999999999999987652   2


Q ss_pred             hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc
Q 000742          246 QGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSM  282 (1313)
Q Consensus       246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~  282 (1313)
                      +....++..+|.++...|++++|+.+++++++..|..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  109 (119)
T TIGR02795        73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGS  109 (119)
T ss_pred             CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence            2346789999999999999999999999999998754

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.39  E-value=2.5e-06  Score=76.24  Aligned_cols=83  Identities=23%  Similarity=0.294  Sum_probs=68.4

Q ss_pred             cCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHH
Q 000742          179 LDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGEL  258 (1313)
Q Consensus       179 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~  258 (1313)
                      +|+|++|+.+++++++..+.      .+ ....++.+|.+|+..|+|++|+..+++ ....+      ......+.+|.+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~------~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~------~~~~~~~l~a~~   67 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPT------NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP------SNPDIHYLLARC   67 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCG------TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH------CHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCC------Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC------CCHHHHHHHHHH
Confidence            58999999999999998543      22 556778899999999999999999999 55544      456777788999


Q ss_pred             HHHhcCHHHHHHHHHHH
Q 000742          259 HYRVQKYDEAILCYQKA  275 (1313)
Q Consensus       259 ~~~~g~~~~A~~~~~ka  275 (1313)
                      +..+|+|++|++++++|
T Consensus        68 ~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   68 LLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHTT-HHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHhcC
Confidence            99999999999999875

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.37  E-value=0.00018  Score=80.24  Aligned_cols=126  Identities=16%  Similarity=0.094  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHhch
Q 000742          166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDII-ICKKIEH  244 (1313)
Q Consensus       166 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~-~~~~~~~  244 (1313)
                      +.+....+..++..|+|.+|.+.+...--....-......-.....|.++|.+++.+|.|.-+..+|.+|+. .+.+...
T Consensus       240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~  319 (696)
T KOG2471|consen  240 SMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN  319 (696)
T ss_pred             cHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc
Confidence            467778889999999999999987764222111000001112455678999999999999999999999996 4444321


Q ss_pred             -----------hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHH
Q 000742          245 -----------CQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQ  291 (1313)
Q Consensus       245 -----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~  291 (1313)
                                 ......++|+.|..|...|++-.|.++|.++...+...+..|..++.
T Consensus       320 g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAE  377 (696)
T KOG2471|consen  320 GLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAE  377 (696)
T ss_pred             cCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence                       12235689999999999999999999999999999888776655544

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.37  E-value=1.7e-05  Score=82.76  Aligned_cols=214  Identities=14%  Similarity=0.074  Sum_probs=144.3

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHH
Q 000742          220 MELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETV  299 (1313)
Q Consensus       220 ~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~  299 (1313)
                      .+-.+|+.|++.+.--.+..+      .....+..+|.+|+...+|..|..+|++.-...|+........++.+++.+.+
T Consensus        21 I~d~ry~DaI~~l~s~~Er~p------~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~   94 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELERSP------RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIY   94 (459)
T ss_pred             HHHhhHHHHHHHHHHHHhcCc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhccc
Confidence            445566677666655544433      34456677777888888888888888877777777666555556666666666


Q ss_pred             HHHHHHHHHHHH---HHHHHHHHHHHHHHhhCCchHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742          300 KKAIEVMDELKK---EEQNLKKLTRNMIIAKGTSQERKYLLQQ------NASLDRLIEKSSMIFAWLKHCEYAKRKKRIA  370 (1313)
Q Consensus       300 ~~a~~~~~~a~~---~~~~~~~l~~~l~~~~~~~~~a~~~~~~------~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~  370 (1313)
                      ..|+.......+   .......+...+....++....+.+.++      +..+.+.|......++|+.|.+-++++++..
T Consensus        95 ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs  174 (459)
T KOG4340|consen   95 ADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS  174 (459)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhc
Confidence            666665554433   2333445555555555555555666555      3457778888889999999999999998764


Q ss_pred             HHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH------------------hCC-----chhHHHHHHHHH
Q 000742          371 SELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKS------------------IGN-----LEGQALAKVNMG  427 (1313)
Q Consensus       371 ~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~------------------~~~-----~~~~~~~~~~lg  427 (1313)
                      .      ..+-.-+++|.++++.|+|+.|+++..+.++---.                  +++     ......++...+
T Consensus       175 G------yqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa  248 (459)
T KOG4340|consen  175 G------YQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA  248 (459)
T ss_pred             C------CCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence            2      23356678999999999999999998887753211                  011     012345677788


Q ss_pred             HHHHHcCCHHHHHHHHHH
Q 000742          428 NVLDSNGDWAGALDAFQE  445 (1313)
Q Consensus       428 ~~y~~~g~~~~A~~~~~k  445 (1313)
                      -++++.|+++.|.+.+..
T Consensus       249 AIeyq~~n~eAA~eaLtD  266 (459)
T KOG4340|consen  249 AIEYQLRNYEAAQEALTD  266 (459)
T ss_pred             hhhhhcccHHHHHHHhhc
Confidence            899999999988776543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.36  E-value=9.8e-07  Score=75.50  Aligned_cols=66  Identities=30%  Similarity=0.480  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Q 000742          209 SRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQ-KYDEAILCYQKALNLAQ  280 (1313)
Q Consensus       209 ~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~kal~~~~  280 (1313)
                      +.+|..+|.++...|++++|+.+|++++++.+      ..+.+++++|.+|..+| ++++|++++++++++.|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p------~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP------NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST------THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            57899999999999999999999999999976      78899999999999999 79999999999999864

...

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.35  E-value=5.3e-05  Score=75.73  Aligned_cols=104  Identities=15%  Similarity=0.097  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHH
Q 000742          105 LVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEE  184 (1313)
Q Consensus       105 ~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~  184 (1313)
                      ..+.+..++..|..|-.+        |-+.-|.-.|.+++.+               .|.++.+++.+|..+...|+|+.
T Consensus        61 ~eeRA~l~fERGvlYDSl--------GL~~LAR~DftQaLai---------------~P~m~~vfNyLG~Yl~~a~~fda  117 (297)
T COG4785          61 DEERAQLLFERGVLYDSL--------GLRALARNDFSQALAI---------------RPDMPEVFNYLGIYLTQAGNFDA  117 (297)
T ss_pred             hHHHHHHHHHhcchhhhh--------hHHHHHhhhhhhhhhc---------------CCCcHHHHHHHHHHHHhcccchH
Confidence            344566677888888877        8888888888888887               56778899999999999999999


Q ss_pred             HHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742          185 AKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK  240 (1313)
Q Consensus       185 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~  240 (1313)
                      |.+.|...+++         +|..-.+..|.|..++.-|+|.-|.+.+.+-.+..+
T Consensus       118 a~eaFds~~EL---------Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~  164 (297)
T COG4785         118 AYEAFDSVLEL---------DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDP  164 (297)
T ss_pred             HHHHhhhHhcc---------CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCC
Confidence            99999998888         444567888888888889999998888876665544

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.35  E-value=1.5e-05  Score=79.70  Aligned_cols=100  Identities=23%  Similarity=0.213  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000742          164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIE  243 (1313)
Q Consensus       164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~  243 (1313)
                      .-..+...+|.+++..|++++|...|++++...      .++.....+...+|.++...|++++|+..++..       .
T Consensus        46 ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~------~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-------~  112 (145)
T PF09976_consen   46 YAALAALQLAKAAYEQGDYDEAKAALEKALANA------PDPELKPLARLRLARILLQQGQYDEALATLQQI-------P  112 (145)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-------c
Confidence            456788999999999999999999999999864      235566788999999999999999999998662       2


Q ss_pred             hhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 000742          244 HCQGEAKGYINLGELHYRVQKYDEAILCYQKAL  276 (1313)
Q Consensus       244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal  276 (1313)
                      +....+.++..+|.+|...|++++|+..|++|+
T Consensus       113 ~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  113 DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            234567788899999999999999999999885

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.32  E-value=1.5e-06  Score=107.13  Aligned_cols=250  Identities=24%  Similarity=0.283  Sum_probs=146.6

Q ss_pred             HhhcCCCcCEEEecCCC-CCHHHHHHHHHHHHhcccCccceEEEccCC--CCCHHHHHHHHhcccCCCCcCEEEecCCC-
Q 000742          853 ALHTHKTVALLDLSHNL-LGNGTMEKLQQFFISSCQNYVDLTLDLHCN--RFGPTTLFQICECPVLFTRLGVLNLSGNR-  928 (1313)
Q Consensus       853 ~L~~~~~L~~L~Ls~n~-l~~~~~~~L~~~l~~~~~~~~l~~L~Ls~n--~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-  928 (1313)
                      .+..++.|+.|.+.++. +++.+...+..      ..+.++.|+++.+  .++..+..... ....+++|+.|+|+.+. 
T Consensus       183 l~~~~~~L~~l~l~~~~~~~~~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~~~L~~l~l~~~~~  255 (482)
T KOG1947|consen  183 LLSSCPLLKRLSLSGCSKITDDSLDALAL------KCPNLEELDLSGCCLLITLSPLLLLL-LLSICRKLKSLDLSGCGL  255 (482)
T ss_pred             HHhhCchhhHhhhcccccCChhhHHHHHh------hCchhheecccCcccccccchhHhhh-hhhhcCCcCccchhhhhc
Confidence            33446888888888875 77766444443      2566788888862  33333321111 33446899999999987 


Q ss_pred             CChhHHHHHHHHHhcCCCCcEEEeecCC-CCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHHHhhccCCcccee
Q 000742          929 LTDACGSYLSTILKNCKVLYSLNIENCS-ITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSEL 1007 (1313)
Q Consensus       929 l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~~~~L~~L 1007 (1313)
                      +++.|+..++..   |++|++|.+.+|. +++.++..++   ..+++|++|+|+++..+++.++..+..   ++++|+.|
T Consensus       256 isd~~l~~l~~~---c~~L~~L~l~~c~~lt~~gl~~i~---~~~~~L~~L~l~~c~~~~d~~l~~~~~---~c~~l~~l  326 (482)
T KOG1947|consen  256 VTDIGLSALASR---CPNLETLSLSNCSNLTDEGLVSIA---ERCPSLRELDLSGCHGLTDSGLEALLK---NCPNLREL  326 (482)
T ss_pred             cCchhHHHHHhh---CCCcceEccCCCCccchhHHHHHH---HhcCcccEEeeecCccchHHHHHHHHH---hCcchhhh
Confidence            899887766654   8899999988887 8988888776   567889999999998666665555533   46666665


Q ss_pred             ecCCCCCChHHHHHHHHHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHHHHHHHHHhcCCC
Q 000742         1008 NLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHG 1087 (1313)
Q Consensus      1008 ~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~ 1087 (1313)
                      .+....-             +..++.+.+........  ..+.......++.|+.+.|..+.+++.+...   .+..++.
T Consensus       327 ~~~~~~~-------------c~~l~~~~l~~~~~~~~--d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~---~l~gc~~  388 (482)
T KOG1947|consen  327 KLLSLNG-------------CPSLTDLSLSGLLTLTS--DDLAELILRSCPKLTDLSLSYCGISDLGLEL---SLRGCPN  388 (482)
T ss_pred             hhhhcCC-------------CccHHHHHHHHhhccCc--hhHhHHHHhcCCCcchhhhhhhhccCcchHH---HhcCCcc
Confidence            5444321             11122222222211110  1122333345677888888887766554311   1223333


Q ss_pred             ccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCC-CCHHHHHHHHHHhhcCCCccEEEccCCC
Q 000742         1088 ILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQ-LGLAGVLQLIKALSENDTLEELNLADNA 1154 (1313)
Q Consensus      1088 L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-i~~~g~~~l~~~l~~~~~L~~L~Ls~N~ 1154 (1313)
                      |          + .+.......    ...++.|+++.|. .++.++..+...   +.++..+++.+..
T Consensus       389 l----------~-~~l~~~~~~----~~~l~~L~l~~~~~~t~~~l~~~~~~---~~~~~~l~~~~~~  438 (482)
T KOG1947|consen  389 L----------T-ESLELRLCR----SDSLRVLNLSDCRLVTDKGLRCLADS---CSNLKDLDLSGCR  438 (482)
T ss_pred             c----------c-hHHHHHhcc----CCccceEecccCccccccchHHHhhh---hhccccCCccCcc
Confidence            3          2 222222221    1127888888886 444444333222   5667777777764

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.31  E-value=1.9e-06  Score=73.74  Aligned_cols=66  Identities=24%  Similarity=0.438  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHH
Q 000742          166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELR-MWDKSREHIEQDIIICK  240 (1313)
Q Consensus       166 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g-~~~~A~~~~~kal~~~~  240 (1313)
                      +.+|..+|..+...|++++|+.+|.+++++         .+..+.+++++|.+|..+| ++++|++++++++++.|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~---------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL---------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH---------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            678999999999999999999999999999         4446889999999999999 79999999999998743

...

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=1.2e-05  Score=89.09  Aligned_cols=145  Identities=15%  Similarity=0.220  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000742          112 CTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIR  191 (1313)
Q Consensus       112 ~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~  191 (1313)
                      .-.-|..|+..        |+|..|...|++|+.........+.............++.|+|.+|.++++|.+|+....+
T Consensus       211 ~ke~Gn~~fK~--------gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~k  282 (397)
T KOG0543|consen  211 KKERGNVLFKE--------GKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNK  282 (397)
T ss_pred             HHHhhhHHHhh--------chHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHH
Confidence            45668888877        9999999999999988664322221111112223445677777777777777777777777


Q ss_pred             HHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHH-HHH
Q 000742          192 GLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDE-AIL  270 (1313)
Q Consensus       192 al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~  270 (1313)
                      +|.+         .+....+++..|.+|..+|+|+.|+..|++|+++.|      ....+...+..+..+..++.+ ..+
T Consensus       283 vLe~---------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P------~Nka~~~el~~l~~k~~~~~~kekk  347 (397)
T KOG0543|consen  283 VLEL---------DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP------SNKAARAELIKLKQKIREYEEKEKK  347 (397)
T ss_pred             HHhc---------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7776         333466777777777777777777777777777766      344445555555544444333 255


Q ss_pred             HHHHHHHHH
Q 000742          271 CYQKALNLA  279 (1313)
Q Consensus       271 ~~~kal~~~  279 (1313)
                      .|.+++...
T Consensus       348 ~y~~mF~k~  356 (397)
T KOG0543|consen  348 MYANMFAKL  356 (397)
T ss_pred             HHHHHhhcc
Confidence            555555433

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.28  E-value=6.4e-08  Score=109.50  Aligned_cols=195  Identities=23%  Similarity=0.268  Sum_probs=118.8

Q ss_pred             CCeEEecCCCCCcCCHHHHHHHhhcCCCcCEEEecCCCCCH--HHHHHHHHHHHhcccCccceEEEccCCCCCHHHHHHH
Q 000742          832 EDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGN--GTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQI  909 (1313)
Q Consensus       832 ~~~l~l~~~~l~~~~~~~l~~~L~~~~~L~~L~Ls~n~l~~--~~~~~L~~~l~~~~~~~~l~~L~Ls~n~l~~~~~~~l  909 (1313)
                      ...|.|++-.+..-.......   ....-...||+.|++..  ..+..+..          +..|.|..|.|..+.. .+
T Consensus        52 sg~l~Ls~rrlk~fpr~a~~~---~ltdt~~aDlsrNR~~elp~~~~~f~~----------Le~liLy~n~~r~ip~-~i  117 (722)
T KOG0532|consen   52 SGRLLLSGRRLKEFPRGAASY---DLTDTVFADLSRNRFSELPEEACAFVS----------LESLILYHNCIRTIPE-AI  117 (722)
T ss_pred             hcccccccchhhcCCCccccc---cccchhhhhccccccccCchHHHHHHH----------HHHHHHHhccceecch-hh
Confidence            345777777665443222211   22345678888888654  22333322          3455666666644433 34


Q ss_pred             HhcccCCCCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChh
Q 000742          910 CECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGN  989 (1313)
Q Consensus       910 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  989 (1313)
                      +.+    ..|+.|||+.|+++-     ++..+..|+ |+.|-+++|+++     .++..+....+|..||.+.|.+    
T Consensus       118 ~~L----~~lt~l~ls~NqlS~-----lp~~lC~lp-Lkvli~sNNkl~-----~lp~~ig~~~tl~~ld~s~nei----  178 (722)
T KOG0532|consen  118 CNL----EALTFLDLSSNQLSH-----LPDGLCDLP-LKVLIVSNNKLT-----SLPEEIGLLPTLAHLDVSKNEI----  178 (722)
T ss_pred             hhh----hHHHHhhhccchhhc-----CChhhhcCc-ceeEEEecCccc-----cCCcccccchhHHHhhhhhhhh----
Confidence            443    678999999998874     667777787 999999999888     5666666677888888888873    


Q ss_pred             hHHHHHHhhccCCccceeecCCCCCChHHHHHHHHHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCC
Q 000742          990 AITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCG 1069 (1313)
Q Consensus       990 ~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 1069 (1313)
                        ..++..+..+.+|+.|++..|++...                                .+.+.  .-.|.+||+|+|+
T Consensus       179 --~slpsql~~l~slr~l~vrRn~l~~l--------------------------------p~El~--~LpLi~lDfScNk  222 (722)
T KOG0532|consen  179 --QSLPSQLGYLTSLRDLNVRRNHLEDL--------------------------------PEELC--SLPLIRLDFSCNK  222 (722)
T ss_pred             --hhchHHhhhHHHHHHHHHhhhhhhhC--------------------------------CHHHh--CCceeeeecccCc
Confidence              44555555555666666665554321                                12221  1145666666666


Q ss_pred             CChhHHHHHHHHHhcCCCccEEEccCCCCCh
Q 000742         1070 LESTCIHKFTASVSLVHGILELNLGGNPIMK 1100 (1313)
Q Consensus      1070 l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~ 1100 (1313)
                      |+..     +-.|..++.|++|-|.+|++..
T Consensus       223 is~i-----Pv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  223 ISYL-----PVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             eeec-----chhhhhhhhheeeeeccCCCCC
Confidence            6543     4455666677777777777663

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.26  E-value=2.5e-05  Score=88.12  Aligned_cols=132  Identities=15%  Similarity=0.093  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000742          110 RACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFL  189 (1313)
Q Consensus       110 ~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~  189 (1313)
                      .+.|..+..++..        +++++|...+...++.               .|+.+..+...+.++...++.++|.+.+
T Consensus       307 aa~YG~A~~~~~~--------~~~d~A~~~l~~L~~~---------------~P~N~~~~~~~~~i~~~~nk~~~A~e~~  363 (484)
T COG4783         307 AAQYGRALQTYLA--------GQYDEALKLLQPLIAA---------------QPDNPYYLELAGDILLEANKAKEAIERL  363 (484)
T ss_pred             HHHHHHHHHHHHh--------cccchHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence            4667777777776        8888888888775444               2234566777788888888888888888


Q ss_pred             HHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHH
Q 000742          190 IRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAI  269 (1313)
Q Consensus       190 ~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  269 (1313)
                      ++++...         |.......++|.+|...|++.+|+..++..+.-.+      ..+..|..||..|..+|+..+|.
T Consensus       364 ~kal~l~---------P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p------~dp~~w~~LAqay~~~g~~~~a~  428 (484)
T COG4783         364 KKALALD---------PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP------EDPNGWDLLAQAYAELGNRAEAL  428 (484)
T ss_pred             HHHHhcC---------CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC------CCchHHHHHHHHHHHhCchHHHH
Confidence            8888773         33456777888888888888888888777766544      66777777777777777777777


Q ss_pred             HHHHHHHHHH
Q 000742          270 LCYQKALNLA  279 (1313)
Q Consensus       270 ~~~~kal~~~  279 (1313)
                      ..+.+.....
T Consensus       429 ~A~AE~~~~~  438 (484)
T COG4783         429 LARAEGYALA  438 (484)
T ss_pred             HHHHHHHHhC
Confidence            6666655543

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.26  E-value=5.3e-05  Score=79.42  Aligned_cols=192  Identities=16%  Similarity=0.118  Sum_probs=144.5

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHH
Q 000742           28 ARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVE  107 (1313)
Q Consensus        28 a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~  107 (1313)
                      +.-++.-|....+.|+|++|++.|+......   ...+..-.+...++.++++.++|++|+.+. ++-+.+.|..++.. 
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~---p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~-drFi~lyP~~~n~d-  108 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRH---PFSPYSEQAQLDLAYAYYKNGEYDLALAYI-DRFIRLYPTHPNAD-  108 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCcccHHHHHHHHHHHHhcccHHHHHHHH-HHHHHhCCCCCChh-
Confidence            4558899999999999999999999876544   233445788999999999999999999999 99999999887654 


Q ss_pred             HHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCc--chhhHHHHHHHHHHHHHHHHcCCHHHH
Q 000742          108 QQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSR--SSFLKEYIDAHNNIGMLQMELDNLEEA  185 (1313)
Q Consensus       108 ~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~--~~~~p~~~~~~~~la~~y~~~g~~~~A  185 (1313)
                        -+++..|.++.........++.-..+|+..|++.++-++...-.+....  ....-.++.--..+|..|.+.|.+..|
T Consensus       109 --Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA  186 (254)
T COG4105         109 --YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAA  186 (254)
T ss_pred             --HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence              6788889888876555555666666777777766655433221110000  011223344556788999999999999


Q ss_pred             HHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000742          186 KKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHI  232 (1313)
Q Consensus       186 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~  232 (1313)
                      +..+++.++-++.      ....-.++..+..+|..+|-.++|...-
T Consensus       187 ~nR~~~v~e~y~~------t~~~~eaL~~l~eaY~~lgl~~~a~~~~  227 (254)
T COG4105         187 INRFEEVLENYPD------TSAVREALARLEEAYYALGLTDEAKKTA  227 (254)
T ss_pred             HHHHHHHHhcccc------ccchHHHHHHHHHHHHHhCChHHHHHHH
Confidence            9999999998665      4556678889999999999999986543

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.26  E-value=3.3e-06  Score=77.10  Aligned_cols=98  Identities=32%  Similarity=0.497  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhh
Q 000742          168 AHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQG  247 (1313)
Q Consensus       168 ~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~  247 (1313)
                      ++..+|..+...|++++|+.+++++++..+.         ...++..+|.+|...|++++|++++++++...+      .
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~------~   66 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD---------NADAYYNLAAAYYKLGKYEEALEDYEKALELDP------D   66 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------c
Confidence            5788999999999999999999999987443         236789999999999999999999999998765      3


Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 000742          248 EAKGYINLGELHYRVQKYDEAILCYQKALNLAQ  280 (1313)
Q Consensus       248 ~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~  280 (1313)
                      ...++..+|.++...|++++|..+++++++..|
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          67 NAKAYYNLGLAYYKLGKYEEALEAYEKALELDP   99 (100)
T ss_pred             chhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence            447889999999999999999999999887543

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.25  E-value=1.2e-05  Score=90.56  Aligned_cols=88  Identities=16%  Similarity=0.001  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHH
Q 000742          210 RLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALA  289 (1313)
Q Consensus       210 ~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~  289 (1313)
                      .+++..+..++..|++++|...++..+...|      +....+...++++...++.++|.+.+++++...|...-.....
T Consensus       307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P------~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~  380 (484)
T COG4783         307 AAQYGRALQTYLAGQYDEALKLLQPLIAAQP------DNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNL  380 (484)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHH
Confidence            3444445555555555555555544333322      4444444445555555555555555555555544443333444


Q ss_pred             HHHHHhHHHHHHHH
Q 000742          290 SQIDQNIETVKKAI  303 (1313)
Q Consensus       290 ~~~~~~lg~~~~a~  303 (1313)
                      ++++...|+..+++
T Consensus       381 a~all~~g~~~eai  394 (484)
T COG4783         381 AQALLKGGKPQEAI  394 (484)
T ss_pred             HHHHHhcCChHHHH
Confidence            44444444444333

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.25  E-value=6.1e-06  Score=95.58  Aligned_cols=109  Identities=13%  Similarity=0.157  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000742          113 TQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRG  192 (1313)
Q Consensus       113 ~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~a  192 (1313)
                      ...|..++..        ++|++|+.+|.+|+++               .|..+.++.++|.+|..+|++++|+..+++|
T Consensus         6 ~~~a~~a~~~--------~~~~~Ai~~~~~Al~~---------------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~A   62 (356)
T PLN03088          6 EDKAKEAFVD--------DDFALAVDLYTQAIDL---------------DPNNAELYADRAQANIKLGNFTEAVADANKA   62 (356)
T ss_pred             HHHHHHHHHc--------CCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3445555554        9999999999999987               3355789999999999999999999999999


Q ss_pred             HhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHH
Q 000742          193 LEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELH  259 (1313)
Q Consensus       193 l~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~  259 (1313)
                      +.+.+         ....+|+.+|.+|..+|+|++|+.+|++++++.+      ....+...++.+.
T Consensus        63 l~l~P---------~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P------~~~~~~~~l~~~~  114 (356)
T PLN03088         63 IELDP---------SLAKAYLRKGTACMKLEEYQTAKAALEKGASLAP------GDSRFTKLIKECD  114 (356)
T ss_pred             HHhCc---------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHH
Confidence            99843         3577899999999999999999999999999976      4444444444443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.23  E-value=2.7e-07  Score=107.03  Aligned_cols=159  Identities=23%  Similarity=0.204  Sum_probs=74.9

Q ss_pred             CCcCEEEecCCCCCH-HHHHHHHHHHHhcc-----------------------cCccceEEEccCCCCCHHHHHHHHhcc
Q 000742          858 KTVALLDLSHNLLGN-GTMEKLQQFFISSC-----------------------QNYVDLTLDLHCNRFGPTTLFQICECP  913 (1313)
Q Consensus       858 ~~L~~L~Ls~n~l~~-~~~~~L~~~l~~~~-----------------------~~~~l~~L~Ls~n~l~~~~~~~l~~~l  913 (1313)
                      .+|++|.|.++.|+- .|+..|..-+.+-.                       ....|.+.+.++|++....-     .+
T Consensus       109 ~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~-----SL  183 (1096)
T KOG1859|consen  109 RSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDE-----SL  183 (1096)
T ss_pred             cceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHH-----HH
Confidence            678888888888764 34444433222111                       11223344555554422211     11


Q ss_pred             cCCCCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHH
Q 000742          914 VLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITN  993 (1313)
Q Consensus       914 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~  993 (1313)
                      ...+.|+.||||+|++++.      ..|..|+.|++|||++|.+..     ++..=.....|..|.|++|.+       .
T Consensus       184 qll~ale~LnLshNk~~~v------~~Lr~l~~LkhLDlsyN~L~~-----vp~l~~~gc~L~~L~lrnN~l-------~  245 (1096)
T KOG1859|consen  184 QLLPALESLNLSHNKFTKV------DNLRRLPKLKHLDLSYNCLRH-----VPQLSMVGCKLQLLNLRNNAL-------T  245 (1096)
T ss_pred             HHHHHhhhhccchhhhhhh------HHHHhcccccccccccchhcc-----ccccchhhhhheeeeecccHH-------H
Confidence            1124466666666666543      345556666666666665542     111001112255566665552       1


Q ss_pred             HHHhhccCCccceeecCCCCCChHH-HHHHHHHhhcCCccEEEccCCCCC
Q 000742          994 LLVKLDTLKSFSELNLNGLKLSKPV-VDRLCQLAKTSCLTHLMLGCTNLG 1042 (1313)
Q Consensus       994 ~~~~l~~~~~L~~L~Ls~n~l~~~~-~~~l~~l~~~~~L~~L~Ls~n~i~ 1042 (1313)
                      -+..+.++.+|+.|||+.|-|.+.. ...+..+   ..|+.|+|.+|.+.
T Consensus       246 tL~gie~LksL~~LDlsyNll~~hseL~pLwsL---s~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  246 TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSL---SSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhhhHHhhhhhhccchhHhhhhcchhhhHHHHH---HHHHHHhhcCCccc
Confidence            2233445556666666666554321 1111222   23556666666553

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=9.5e-06  Score=89.75  Aligned_cols=116  Identities=20%  Similarity=0.232  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhcc------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000742          165 YIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEV------SEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIII  238 (1313)
Q Consensus       165 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~  238 (1313)
                      .+.....-|..|++.|+|..|...|++|+.....-..      .........++.|++.+|.++++|.+|+.+..+++.+
T Consensus       207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~  286 (397)
T KOG0543|consen  207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL  286 (397)
T ss_pred             HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence            3556667799999999999999999999988653100      0112234667999999999999999999999999999


Q ss_pred             HHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChh
Q 000742          239 CKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDED  286 (1313)
Q Consensus       239 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~  286 (1313)
                      .+      ....+++..|.++..+|+|+.|+..|++|+++.|......
T Consensus       287 ~~------~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~  328 (397)
T KOG0543|consen  287 DP------NNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAAR  328 (397)
T ss_pred             CC------CchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHH
Confidence            76      8899999999999999999999999999999999775533

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.21  E-value=2e-07  Score=111.14  Aligned_cols=267  Identities=21%  Similarity=0.149  Sum_probs=144.8

Q ss_pred             CCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHHH
Q 000742          917 TRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLV  996 (1313)
Q Consensus       917 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~  996 (1313)
                      +.++.++...+.++..... .    ..+..++.+++..|.|..     +...+..+.+|+.|++.+|.+-      .+..
T Consensus        49 ~~~~~~~~~~~~~~~~~~~-~----~~l~~l~~l~l~~n~i~~-----~~~~l~~~~~l~~l~l~~n~i~------~i~~  112 (414)
T KOG0531|consen   49 SDLEEIDLIFNLDGSDEDL-V----ESLTSLKELNLRQNLIAK-----ILNHLSKLKSLEALDLYDNKIE------KIEN  112 (414)
T ss_pred             chhhhhcchhccccchhhh-H----HHhHhHHhhccchhhhhh-----hhcccccccceeeeeccccchh------hccc
Confidence            5777788877766654221 1    345556667777776663     3333556778888888888741      1222


Q ss_pred             hhccCCccceeecCCCCCChHHHHHHHHHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHHH
Q 000742          997 KLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIH 1076 (1313)
Q Consensus       997 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 1076 (1313)
                      .+..+++|++|+|++|.|+...     .+..++.|+.|++++|.|.+..      .+ ..+..|+.+++++|.++.....
T Consensus       113 ~l~~~~~L~~L~ls~N~I~~i~-----~l~~l~~L~~L~l~~N~i~~~~------~~-~~l~~L~~l~l~~n~i~~ie~~  180 (414)
T KOG0531|consen  113 LLSSLVNLQVLDLSFNKITKLE-----GLSTLTLLKELNLSGNLISDIS------GL-ESLKSLKLLDLSYNRIVDIEND  180 (414)
T ss_pred             chhhhhcchheecccccccccc-----chhhccchhhheeccCcchhcc------CC-ccchhhhcccCCcchhhhhhhh
Confidence            2455667777777777776521     1222233677777777665421      11 1134566666666666554211


Q ss_pred             HHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCC--ccEEEccCCC
Q 000742         1077 KFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDT--LEELNLADNA 1154 (1313)
Q Consensus      1077 ~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~--L~~L~Ls~N~ 1154 (1313)
                         . +..+..|+.+++++|.+..........       .+..+++..|.|+..      ..+..+..  |+.+++++|.
T Consensus       181 ---~-~~~~~~l~~l~l~~n~i~~i~~~~~~~-------~l~~~~l~~n~i~~~------~~l~~~~~~~L~~l~l~~n~  243 (414)
T KOG0531|consen  181 ---E-LSELISLEELDLGGNSIREIEGLDLLK-------KLVLLSLLDNKISKL------EGLNELVMLHLRELYLSGNR  243 (414)
T ss_pred             ---h-hhhccchHHHhccCCchhcccchHHHH-------HHHHhhcccccceec------cCcccchhHHHHHHhcccCc
Confidence               0 245566666666666654322111111       133335555555421      11222222  5666666666


Q ss_pred             CChhhhhhhcccccccCCcccccccccccccccccccccccccCCCCcccccccCCccchhhhccccCCCCcccccccCC
Q 000742         1155 SKELTLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFDNSCTSSCQKNS 1234 (1313)
Q Consensus      1155 i~~~~~~~~l~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ 1234 (1313)
                      +...+                                   ..+..+..+..|++.+|.+.....     ......+..+.
T Consensus       244 i~~~~-----------------------------------~~~~~~~~l~~l~~~~n~~~~~~~-----~~~~~~~~~~~  283 (414)
T KOG0531|consen  244 ISRSP-----------------------------------EGLENLKNLPVLDLSSNRISNLEG-----LERLPKLSELW  283 (414)
T ss_pred             ccccc-----------------------------------ccccccccccccchhhcccccccc-----ccccchHHHhc
Confidence            55431                                   123455677777777777755422     12224566666


Q ss_pred             ccchhhHHH---HHHH-HhccccCceecCCCCCCCHHH
Q 000742         1235 SFECQFVQE---LSSA-IGMAKPLQLLDLSNNGFSTQA 1268 (1313)
Q Consensus      1235 Ls~n~l~~~---l~~~-l~~~~~L~~LdLs~N~l~~~~ 1268 (1313)
                      +..|.+...   .... ....+.++.+.+.+|.+....
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (414)
T KOG0531|consen  284 LNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKIS  321 (414)
T ss_pred             cCcchhcchhhhhccccccccccccccccccCcccccc
Confidence            666665522   1111 556778888888888777643

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=98.18  E-value=0.0047  Score=75.16  Aligned_cols=250  Identities=11%  Similarity=-0.026  Sum_probs=155.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHH
Q 000742          131 YSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSR  210 (1313)
Q Consensus       131 ~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  210 (1313)
                      .++.+|.....++....+......      .....+......|.+....|++++|+++.+.++...++    ......+.
T Consensus       429 ~r~~ea~~li~~l~~~l~~~~~~~------~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~----~~~~~r~~  498 (894)
T COG2909         429 HRLAEAETLIARLEHFLKAPMHSR------QGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPE----AAYRSRIV  498 (894)
T ss_pred             cChHHHHHHHHHHHHHhCcCcccc------hhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc----ccchhhhh
Confidence            778888888877766544421111      12255677777888899999999999999999998776    34455677


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc----cChh
Q 000742          211 LHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSM----EDED  286 (1313)
Q Consensus       211 ~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~----~~~~  286 (1313)
                      ++..+|.+..-.|++++|..+.+++.++..+.+.......+....+.+...+|+..  ...-+++.......    ....
T Consensus       499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~--~a~~~~~~~~~~~q~l~q~~~~  576 (894)
T COG2909         499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVA--RAEQEKAFNLIREQHLEQKPRH  576 (894)
T ss_pred             hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHhhhcccc
Confidence            88999999999999999999999999999988887888888888899999999332  22222222221110    0000


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742          287 ALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRK  366 (1313)
Q Consensus       287 ~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a  366 (1313)
                      .....++   +.+.                                                  ...-.++.+..-....
T Consensus       577 ~f~~~~r---~~ll--------------------------------------------------~~~~r~~~~~~ear~~  603 (894)
T COG2909         577 EFLVRIR---AQLL--------------------------------------------------RAWLRLDLAEAEARLG  603 (894)
T ss_pred             hhHHHHH---HHHH--------------------------------------------------HHHHHHhhhhHHhhhc
Confidence            0000000   0000                                                  0000011111212222


Q ss_pred             HHHHHHhCCchhhH-HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCc-hhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000742          367 KRIASELCDKGKLS-DSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNL-EGQALAKVNMGNVLDSNGDWAGALDAFQ  444 (1313)
Q Consensus       367 ~~i~~~~~~~~~~a-~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~-~~~~~~~~~lg~~y~~~g~~~~A~~~~~  444 (1313)
                      ..+.......+... .++..++.+++..|++++|.....+...+......+ ...+.++.-.......+|++++|.....
T Consensus       604 ~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~  683 (894)
T COG2909         604 IEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLL  683 (894)
T ss_pred             chhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHH
Confidence            22222222222222 233579999999999999999999888877654322 2223333334444456789988888777


Q ss_pred             H
Q 000742          445 E  445 (1313)
Q Consensus       445 k  445 (1313)
                      +
T Consensus       684 ~  684 (894)
T COG2909         684 K  684 (894)
T ss_pred             h
Confidence            6

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.18  E-value=5.7e-05  Score=75.52  Aligned_cols=124  Identities=14%  Similarity=0.022  Sum_probs=96.3

Q ss_pred             HHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 000742           39 KNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRT  118 (1313)
Q Consensus        39 ~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~  118 (1313)
                      ...++...+...+++.+.-.+   .......+...+|.+++..|++++|...| ++++...   ++......+...+|.+
T Consensus        22 ~~~~~~~~~~~~~~~l~~~~~---~s~ya~~A~l~lA~~~~~~g~~~~A~~~l-~~~~~~~---~d~~l~~~a~l~LA~~   94 (145)
T PF09976_consen   22 LQAGDPAKAEAAAEQLAKDYP---SSPYAALAALQLAKAAYEQGDYDEAKAAL-EKALANA---PDPELKPLARLRLARI   94 (145)
T ss_pred             HHCCCHHHHHHHHHHHHHHCC---CChHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHhhC---CCHHHHHHHHHHHHHH
Confidence            367888888777776665542   22234677888999999999999999999 9988854   3444456778899999


Q ss_pred             HHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000742          119 YYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGL  193 (1313)
Q Consensus       119 y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al  193 (1313)
                      +...        |++++|+..++..       .+         .+..+.++..+|.+|...|++++|+..|++|+
T Consensus        95 ~~~~--------~~~d~Al~~L~~~-------~~---------~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   95 LLQQ--------GQYDEALATLQQI-------PD---------EAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHc--------CCHHHHHHHHHhc-------cC---------cchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            9987        9999999988551       11         12346688899999999999999999999985

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.17  E-value=3.4e-07  Score=106.25  Aligned_cols=207  Identities=24%  Similarity=0.192  Sum_probs=122.6

Q ss_pred             CCCcCEEEecCCCCCh-hHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHH-HhcC------CCccEEEeCCCCCCC
Q 000742          916 FTRLGVLNLSGNRLTD-ACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADA-LGAE------STLAQLCIGYNSPVT  987 (1313)
Q Consensus       916 ~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~------~~L~~L~Ls~n~l~~  987 (1313)
                      +..|++|.|.++.|+. .|+..|-.      .|++|-- .|.++  .+.++..+ ....      ..|.+.+.++|.+  
T Consensus       108 F~sLr~LElrg~~L~~~~GL~~lr~------qLe~LIC-~~Sl~--Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L--  176 (1096)
T KOG1859|consen  108 FRSLRVLELRGCDLSTAKGLQELRH------QLEKLIC-HNSLD--ALRHVFASCGGDISNSPVWNKLATASFSYNRL--  176 (1096)
T ss_pred             ccceeeEEecCcchhhhhhhHHHHH------hhhhhhh-hccHH--HHHHHHHHhccccccchhhhhHhhhhcchhhH--
Confidence            4789999999888864 33333322      2444422 12222  11111111 1111      2367778888874  


Q ss_pred             hhhHHHHHHhhccCCccceeecCCCCCChHHHHHHHHHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccC
Q 000742          988 GNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSY 1067 (1313)
Q Consensus       988 ~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~ 1067 (1313)
                          ..+-.++.-++.|+.|||++|+++..  .   .+..++.|++|||+.|.+...     + .+....++|+.|.|++
T Consensus       177 ----~~mD~SLqll~ale~LnLshNk~~~v--~---~Lr~l~~LkhLDlsyN~L~~v-----p-~l~~~gc~L~~L~lrn  241 (1096)
T KOG1859|consen  177 ----VLMDESLQLLPALESLNLSHNKFTKV--D---NLRRLPKLKHLDLSYNCLRHV-----P-QLSMVGCKLQLLNLRN  241 (1096)
T ss_pred             ----HhHHHHHHHHHHhhhhccchhhhhhh--H---HHHhcccccccccccchhccc-----c-ccchhhhhheeeeecc
Confidence                33444555666888999999988663  2   334456799999999987542     1 1111125699999999


Q ss_pred             CCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHH--HHHHHHHHhhcCCCc
Q 000742         1068 CGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLA--GVLQLIKALSENDTL 1145 (1313)
Q Consensus      1068 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~--g~~~l~~~l~~~~~L 1145 (1313)
                      |-++..      ..+.++.+|..|||++|-|.+..--.....+.    .|+.|+|.||.+--.  --.+.++.+..+.-=
T Consensus       242 N~l~tL------~gie~LksL~~LDlsyNll~~hseL~pLwsLs----~L~~L~LeGNPl~c~p~hRaataqYl~~~~a~  311 (1096)
T KOG1859|consen  242 NALTTL------RGIENLKSLYGLDLSYNLLSEHSELEPLWSLS----SLIVLWLEGNPLCCAPWHRAATAQYLHKNSAP  311 (1096)
T ss_pred             cHHHhh------hhHHhhhhhhccchhHhhhhcchhhhHHHHHH----HHHHHhhcCCccccCHHHHHHHHhHhccccCC
Confidence            988765      34567789999999999887544333223333    388999999987421  111233444444444


Q ss_pred             cEEEccCCCCChh
Q 000742         1146 EELNLADNASKEL 1158 (1313)
Q Consensus      1146 ~~L~Ls~N~i~~~ 1158 (1313)
                      ..+-|.+-.|+..
T Consensus       312 ~~f~LDgk~l~~~  324 (1096)
T KOG1859|consen  312 VKFKLDGKALGGR  324 (1096)
T ss_pred             cceEecceeccch
Confidence            4566666666554

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.16  E-value=1.4e-05  Score=87.24  Aligned_cols=109  Identities=9%  Similarity=0.050  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhch
Q 000742          166 IDAHNNIGMLQ-MELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEH  244 (1313)
Q Consensus       166 ~~~~~~la~~y-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~  244 (1313)
                      ....+..|..+ ...|+|++|+..|++.++.++.      ......+++.+|.+|+..|++++|+.+|++++..++   +
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~------s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP---~  212 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD------STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP---K  212 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---C
Confidence            35566666655 5679999999999999999766      445567899999999999999999999999998877   3


Q ss_pred             hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcc
Q 000742          245 CQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSME  283 (1313)
Q Consensus       245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~  283 (1313)
                      .+....+++.+|.+|..+|++++|..+|+++++..|...
T Consensus       213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            456788999999999999999999999999999887643

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.16  E-value=8.5e-08  Score=108.56  Aligned_cols=178  Identities=16%  Similarity=0.157  Sum_probs=127.7

Q ss_pred             ccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHh
Q 000742         1031 LTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLL 1110 (1313)
Q Consensus      1031 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l 1110 (1313)
                      -...+|+.|.+....... +. +    -.|+.|.|..|.|-.     ++.++..+..|+.|||+.|.++ ..+..+|.+ 
T Consensus        77 t~~aDlsrNR~~elp~~~-~~-f----~~Le~liLy~n~~r~-----ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-  143 (722)
T KOG0532|consen   77 TVFADLSRNRFSELPEEA-CA-F----VSLESLILYHNCIRT-----IPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-  143 (722)
T ss_pred             hhhhhccccccccCchHH-HH-H----HHHHHHHHHhcccee-----cchhhhhhhHHHHhhhccchhh-cCChhhhcC-
Confidence            456677888775432211 11 1    246667777776544     3556777788888888888876 334455443 


Q ss_pred             cCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEccCCCCChhhhhhhcccccccCCcccccccccccccccccc
Q 000742         1111 MNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKELTLQQNLSSVNSENLQPALKTSDCVSKEVDTDQ 1190 (1313)
Q Consensus      1111 ~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~~l~~l~~~~l~~n~~~~~~~~~~~~~~~ 1190 (1313)
                           .|+.|.+++|+++     .++..+....+|..||.+.|.|....                               
T Consensus       144 -----pLkvli~sNNkl~-----~lp~~ig~~~tl~~ld~s~nei~slp-------------------------------  182 (722)
T KOG0532|consen  144 -----PLKVLIVSNNKLT-----SLPEEIGLLPTLAHLDVSKNEIQSLP-------------------------------  182 (722)
T ss_pred             -----cceeEEEecCccc-----cCCcccccchhHHHhhhhhhhhhhch-------------------------------
Confidence                 4888888888887     36667777778888888888776542                               


Q ss_pred             cccccccCCCCcccccccCCccchhhhccccCCCCcccccccCCccchhhHHHHHHHHhccccCceecCCCCCCCHHHHH
Q 000742         1191 HGLFAMNTDCNDLEVADSEDDKIRVESAASGFDNSCTSSCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFSTQAVK 1270 (1313)
Q Consensus      1191 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~l~~~l~~~~~L~~LdLs~N~l~~~~~~ 1270 (1313)
                          ..+.++.+|+.|.+..|++..+++     ..|...|..||+|.|+++. ||-.|..++.|++|-|.+|.+....++
T Consensus       183 ----sql~~l~slr~l~vrRn~l~~lp~-----El~~LpLi~lDfScNkis~-iPv~fr~m~~Lq~l~LenNPLqSPPAq  252 (722)
T KOG0532|consen  183 ----SQLGYLTSLRDLNVRRNHLEDLPE-----ELCSLPLIRLDFSCNKISY-LPVDFRKMRHLQVLQLENNPLQSPPAQ  252 (722)
T ss_pred             ----HHhhhHHHHHHHHHhhhhhhhCCH-----HHhCCceeeeecccCceee-cchhhhhhhhheeeeeccCCCCCChHH
Confidence                234667788899999999977644     3444688999999999764 888999999999999999999987655


Q ss_pred             HH
Q 000742         1271 TL 1272 (1313)
Q Consensus      1271 ~l 1272 (1313)
                      ..
T Consensus       253 IC  254 (722)
T KOG0532|consen  253 IC  254 (722)
T ss_pred             HH
Confidence            43

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.15  E-value=1.4e-05  Score=98.50  Aligned_cols=37  Identities=22%  Similarity=0.371  Sum_probs=20.8

Q ss_pred             cCCCCcEEEeecC-CCCHHHHHHHHHHHhcCCCccEEEeCC
Q 000742          943 NCKVLYSLNIENC-SITSRTIQKVADALGAESTLAQLCIGY  982 (1313)
Q Consensus       943 ~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~  982 (1313)
                      .++.|+.|.+..| .++..+   +......+++|+.|++++
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~  223 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDS---LDALALKCPNLEELDLSG  223 (482)
T ss_pred             hCchhhHhhhcccccCChhh---HHHHHhhCchhheecccC
Confidence            3566666666666 444333   233345566666666665

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.15  E-value=6.3e-05  Score=71.08  Aligned_cols=102  Identities=20%  Similarity=0.140  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhh
Q 000742          167 DAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQ  246 (1313)
Q Consensus       167 ~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~  246 (1313)
                      .+.+.+|.++...|+.++|+.+|+++++.-      -..+....++..+|..|..+|++++|+..+++++...+   +.+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g------L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p---~~~   72 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAG------LSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFP---DDE   72 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---Ccc
Confidence            478899999999999999999999999862      23556778999999999999999999999999987654   222


Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 000742          247 GEAKGYINLGELHYRVQKYDEAILCYQKALN  277 (1313)
Q Consensus       247 ~~~~~~~~la~~~~~~g~~~~A~~~~~kal~  277 (1313)
                      ........++.++...|++++|+..+-.++.
T Consensus        73 ~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   73 LNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3556667788899999999999999988775

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.14  E-value=1.8e-05  Score=77.87  Aligned_cols=109  Identities=25%  Similarity=0.317  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchh
Q 000742          166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHC  245 (1313)
Q Consensus       166 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~  245 (1313)
                      +..+-.-|.-++..|+|++|..-|..|+++++..    ....++..|.+.|.+..+++.++.|+....+|+++.+     
T Consensus        95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~----~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-----  165 (271)
T KOG4234|consen   95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPST----STEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-----  165 (271)
T ss_pred             HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccc----cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-----
Confidence            3344455777888999999999999999999874    4466788999999999999999999999999999977     


Q ss_pred             hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccC
Q 000742          246 QGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMED  284 (1313)
Q Consensus       246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~  284 (1313)
                       .+..++...|.+|.++..|++|++-|++.++..|....
T Consensus       166 -ty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~e  203 (271)
T KOG4234|consen  166 -TYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRRE  203 (271)
T ss_pred             -hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHH
Confidence             77888889999999999999999999999999886543

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.13  E-value=1.6e-05  Score=76.60  Aligned_cols=104  Identities=17%  Similarity=0.128  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHH
Q 000742           29 RWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQ  108 (1313)
Q Consensus        29 ~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~  108 (1313)
                      ..++.+|..+...|++++|++.|.+++...+.   ......+++.+|.++...|++++|+.++ ++++...|.....   
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~-~~~~~~~p~~~~~---   75 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPK---STYAPNAHYWLGEAYYAQGKYADAAKAF-LAVVKKYPKSPKA---   75 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---ccccHHHHHHHHHHHHhhccHHHHHHHH-HHHHHHCCCCCcc---
Confidence            45889999999999999999999999876532   2334678999999999999999999999 9999887654322   


Q ss_pred             HHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHH
Q 000742          109 QRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLA  147 (1313)
Q Consensus       109 a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~  147 (1313)
                      ..++..+|.+|..+        +++++|+.+++++++..
T Consensus        76 ~~~~~~~~~~~~~~--------~~~~~A~~~~~~~~~~~  106 (119)
T TIGR02795        76 PDALLKLGMSLQEL--------GDKEKAKATLQQVIKRY  106 (119)
T ss_pred             cHHHHHHHHHHHHh--------CChHHHHHHHHHHHHHC
Confidence            35689999999988        99999999999998873

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.12  E-value=1.7e-06  Score=103.09  Aligned_cols=176  Identities=23%  Similarity=0.237  Sum_probs=100.2

Q ss_pred             CCCcEEEeecCCCCHHHHHHHHHHHhcCC-CccEEEeCCCCCCChhhHHHHHHhhccCCccceeecCCCCCChHHHHHHH
Q 000742          945 KVLYSLNIENCSITSRTIQKVADALGAES-TLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLC 1023 (1313)
Q Consensus       945 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 1023 (1313)
                      +.++.|++.+|.++.     +........ +|+.|++++|.+      ..++..+..+++|+.|++++|++++..... +
T Consensus       116 ~~l~~L~l~~n~i~~-----i~~~~~~~~~nL~~L~l~~N~i------~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~-~  183 (394)
T COG4886         116 TNLTSLDLDNNNITD-----IPPLIGLLKSNLKELDLSDNKI------ESLPSPLRNLPNLKNLDLSFNDLSDLPKLL-S  183 (394)
T ss_pred             cceeEEecCCccccc-----Cccccccchhhcccccccccch------hhhhhhhhccccccccccCCchhhhhhhhh-h
Confidence            445555565555552     222223332 566666666652      223234556666666666666665532221 0


Q ss_pred             HHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHH
Q 000742         1024 QLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGA 1103 (1313)
Q Consensus      1024 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~ 1103 (1313)
                         ..+.|+.|++++|.+.+...     .+ .....|++|.+++|.+...     ...+...+.+..|.+++|++.+. +
T Consensus       184 ---~~~~L~~L~ls~N~i~~l~~-----~~-~~~~~L~~l~~~~N~~~~~-----~~~~~~~~~l~~l~l~~n~~~~~-~  248 (394)
T COG4886         184 ---NLSNLNNLDLSGNKISDLPP-----EI-ELLSALEELDLSNNSIIEL-----LSSLSNLKNLSGLELSNNKLEDL-P  248 (394)
T ss_pred             ---hhhhhhheeccCCccccCch-----hh-hhhhhhhhhhhcCCcceec-----chhhhhcccccccccCCceeeec-c
Confidence               23457777777777765321     11 1113478888888852221     23455667777777888877642 1


Q ss_pred             HHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEccCCCCChh
Q 000742         1104 NALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKEL 1158 (1313)
Q Consensus      1104 ~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~ 1158 (1313)
                      ..+..     ...++.|++++|.|+..     .. +....+|+.|++++|.+...
T Consensus       249 ~~~~~-----l~~l~~L~~s~n~i~~i-----~~-~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         249 ESIGN-----LSNLETLDLSNNQISSI-----SS-LGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             chhcc-----ccccceecccccccccc-----cc-ccccCccCEEeccCcccccc
Confidence            12222     12488888888888743     22 67778888888888887655

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.12  E-value=0.00063  Score=85.18  Aligned_cols=185  Identities=12%  Similarity=0.105  Sum_probs=146.0

Q ss_pred             CCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHH--HHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHH
Q 000742           65 KHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELA--KDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKS  142 (1313)
Q Consensus        65 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~--~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~  142 (1313)
                      +.-+-.|...-..+...++.++|.+.+ ++||.-.  +..........||.++-..|           |.-+.-.+.|++
T Consensus      1455 PNSSi~WI~YMaf~LelsEiekAR~ia-erAL~tIN~REeeEKLNiWiA~lNlEn~y-----------G~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIA-ERALKTINFREEEEKLNIWIAYLNLENAY-----------GTEESLKKVFER 1522 (1710)
T ss_pred             CCcchHHHHHHHHHhhhhhhHHHHHHH-HHHhhhCCcchhHHHHHHHHHHHhHHHhh-----------CcHHHHHHHHHH
Confidence            333556666666677889999999999 9999754  12222333445666666666           666677888888


Q ss_pred             HHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHc
Q 000742          143 AMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMEL  222 (1313)
Q Consensus       143 Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~  222 (1313)
                      |-+++..                ..+|..|..+|...+++++|.++|+..++-+.+         ...+|..+|...+..
T Consensus      1523 Acqycd~----------------~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q---------~~~vW~~y~~fLl~~ 1577 (1710)
T KOG1070|consen 1523 ACQYCDA----------------YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ---------TRKVWIMYADFLLRQ 1577 (1710)
T ss_pred             HHHhcch----------------HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc---------hhhHHHHHHHHHhcc
Confidence            8887543                368899999999999999999999999988654         467899999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHH
Q 000742          223 RMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALAS  290 (1313)
Q Consensus       223 g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~  290 (1313)
                      .+-+.|...+++|++..|+    ..........|++-++.|+.+.+...|+..+.-+|+-.+.|....
T Consensus      1578 ne~~aa~~lL~rAL~~lPk----~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYi 1641 (1710)
T KOG1070|consen 1578 NEAEAARELLKRALKSLPK----QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYI 1641 (1710)
T ss_pred             cHHHHHHHHHHHHHhhcch----hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHH
Confidence            9999999999999999885    245566777899999999999999999999999988777665443

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.11  E-value=0.00047  Score=77.06  Aligned_cols=161  Identities=12%  Similarity=0.121  Sum_probs=109.3

Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhc----CHHHHHHH
Q 000742           36 DILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDAS----DLVEQQRA  111 (1313)
Q Consensus        36 ~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~----~~~~~a~a  111 (1313)
                      ..|.+..+...+....+-+..+.      ..-+.+....+..++..|+|.+|.+.+ ... .+....+    ........
T Consensus       214 r~llq~~~Lk~~krevK~vmn~a------~~s~~~l~LKsq~eY~~gn~~kA~KlL-~~s-ni~~~~g~~~T~q~~~cif  285 (696)
T KOG2471|consen  214 RFLLQTRNLKLAKREVKHVMNIA------QDSSMALLLKSQLEYAHGNHPKAMKLL-LVS-NIHKEAGGTITPQLSSCIF  285 (696)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhc------CCCcHHHHHHHHHHHHhcchHHHHHHH-Hhc-ccccccCccccchhhhhee
Confidence            33445555555555555444443      233677888899999999999999887 322 2222221    11123456


Q ss_pred             HHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHH-HHHHhccC--CCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000742          112 CTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMK-LAQTLKEN--PATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKF  188 (1313)
Q Consensus       112 ~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~-l~~~~~~~--~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~  188 (1313)
                      ++++|-+++.+        +.|.-+..+|.+|++ .+.++...  +.....-....-.++.++.|..|...|+.-.|.+.
T Consensus       286 ~NNlGcIh~~~--------~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqC  357 (696)
T KOG2471|consen  286 NNNLGCIHYQL--------GCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQC  357 (696)
T ss_pred             ecCcceEeeeh--------hhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHH
Confidence            78999999999        999999999999996 55554432  11111111123457899999999999999999999


Q ss_pred             HHHHHhHhhhhccCCCchHHHHHHHHHHHHHHH
Q 000742          189 LIRGLEICNEEEVSEDDDGRSRLHHNLGNVYME  221 (1313)
Q Consensus       189 ~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~  221 (1313)
                      |.++...+..         ..+.|..+|.+...
T Consensus       358 f~~av~vfh~---------nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  358 FQKAVHVFHR---------NPRLWLRLAECCIM  381 (696)
T ss_pred             HHHHHHHHhc---------CcHHHHHHHHHHHH
Confidence            9999999766         35677888777654

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.10  E-value=0.00054  Score=85.79  Aligned_cols=250  Identities=14%  Similarity=0.055  Sum_probs=173.3

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000742          163 KEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKI  242 (1313)
Q Consensus       163 p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~  242 (1313)
                      |+-+..|...-..+.+.++.++|.+.+++|+....--+ .+.......+|.||-..|   |.-+.-.+.|++|.+++.  
T Consensus      1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~RE-eeEKLNiWiA~lNlEn~y---G~eesl~kVFeRAcqycd-- 1528 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFRE-EEEKLNIWIAYLNLENAY---GTEESLKKVFERACQYCD-- 1528 (1710)
T ss_pred             CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcch-hHHHHHHHHHHHhHHHhh---CcHHHHHHHHHHHHHhcc--
Confidence            44566788888888899999999999999998752100 022334555666665555   566777888888888764  


Q ss_pred             chhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742          243 EHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRN  322 (1313)
Q Consensus       243 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~  322 (1313)
                           ...+|..|..+|...+++++|.++|+..++-+.+....|...+..+....+...|.                   
T Consensus      1529 -----~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~------------------- 1584 (1710)
T KOG1070|consen 1529 -----AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAAR------------------- 1584 (1710)
T ss_pred             -----hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHH-------------------
Confidence                 45688899999999999999999999999888754444444443333333322232                   


Q ss_pred             HHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHH
Q 000742          323 MIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKW  402 (1313)
Q Consensus       323 l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~  402 (1313)
                                                            ..+++|+....+    ..-.......|.+-++.|+.+.+...
T Consensus      1585 --------------------------------------~lL~rAL~~lPk----~eHv~~IskfAqLEFk~GDaeRGRtl 1622 (1710)
T KOG1070|consen 1585 --------------------------------------ELLKRALKSLPK----QEHVEFISKFAQLEFKYGDAERGRTL 1622 (1710)
T ss_pred             --------------------------------------HHHHHHHhhcch----hhhHHHHHHHHHHHhhcCCchhhHHH
Confidence                                                  333333333222    11224555678888999999999999


Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhHHHHHHhhcCHHHHHH
Q 000742          403 YTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEARR  482 (1313)
Q Consensus       403 ~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~~L~~~~~~~~~~~~~a~~  482 (1313)
                      |+-.+.-+|      .....|.-+...-.+.|+.+.+...|++++++    .-+..+..-++.+-.-|....++.+.+..
T Consensus      1623 fEgll~ayP------KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l----~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1623 FEGLLSAYP------KRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL----KLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred             HHHHHhhCc------cchhHHHHHHHHHHccCCHHHHHHHHHHHHhc----CCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence            998886654      44456777777778889999999999999886    34444555666666667777788888877


Q ss_pred             HHHHHHHHHhhh
Q 000742          483 LQHEIDKLKESK  494 (1313)
Q Consensus       483 ~~e~~~~l~~s~  494 (1313)
                      ......+|-++.
T Consensus      1693 VKarA~EYv~s~ 1704 (1710)
T KOG1070|consen 1693 VKARAKEYVESI 1704 (1710)
T ss_pred             HHHHHHHHHHHh
Confidence            777777776655

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=98.09  E-value=0.011  Score=72.14  Aligned_cols=236  Identities=12%  Similarity=-0.018  Sum_probs=148.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchh
Q 000742          166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHC  245 (1313)
Q Consensus       166 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~  245 (1313)
                      +......|.......++.+|.....++....+...........+...-..|.+....|++++|+++.+.++...+.... 
T Consensus       415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~-  493 (894)
T COG2909         415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY-  493 (894)
T ss_pred             chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc-
Confidence            4455666777788899999999999888776652112233445666677788999999999999999999998875433 


Q ss_pred             hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742          246 QGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMII  325 (1313)
Q Consensus       246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~  325 (1313)
                      .....++..+|.++.-.|++++|..+...+.++.......+...- +......+.++.+..                   
T Consensus       494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~-~~~~~s~il~~qGq~-------------------  553 (894)
T COG2909         494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALW-SLLQQSEILEAQGQV-------------------  553 (894)
T ss_pred             hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHH-HHHHHHHHHHHhhHH-------------------
Confidence            345678889999999999999999999999999987765433221 111111222211100                   


Q ss_pred             hhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHH
Q 000742          326 AKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKK-RIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYT  404 (1313)
Q Consensus       326 ~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~-~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~  404 (1313)
                                                   .|......+.... ....+.........++..+.++|.+   ++.|..-..
T Consensus       554 -----------------------------~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear  601 (894)
T COG2909         554 -----------------------------ARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEAR  601 (894)
T ss_pred             -----------------------------HHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhh
Confidence                                         0000000000000 0001111111112333333334433   777777777


Q ss_pred             HHHHHHHHhCCchhHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 000742          405 KSWEMYKSIGNLEGQA-LAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEAN  454 (1313)
Q Consensus       405 kal~l~~~~~~~~~~~-~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~  454 (1313)
                      +.+++-......+... .+++.++.+++..|++++|.....+...+....+
T Consensus       602 ~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~  652 (894)
T COG2909         602 LGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ  652 (894)
T ss_pred             hcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence            7776655444333333 3346999999999999999999999988876654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.09  E-value=2.3e-07  Score=110.55  Aligned_cols=152  Identities=22%  Similarity=0.210  Sum_probs=89.3

Q ss_pred             CCcCEEEecCCCCCHHHHHHHHHHHHhcccCccceEEEccCCCCCHHHHHHHHhcccCCCCcCEEEecCCCCChhHHHHH
Q 000742          858 KTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYL  937 (1313)
Q Consensus       858 ~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~~~~l~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l  937 (1313)
                      +.++.++...+.++..... ...       ...+..+++..|.|..     +...+..+.+|+.|+|.+|.|...     
T Consensus        49 ~~~~~~~~~~~~~~~~~~~-~~~-------l~~l~~l~l~~n~i~~-----~~~~l~~~~~l~~l~l~~n~i~~i-----  110 (414)
T KOG0531|consen   49 SDLEEIDLIFNLDGSDEDL-VES-------LTSLKELNLRQNLIAK-----ILNHLSKLKSLEALDLYDNKIEKI-----  110 (414)
T ss_pred             chhhhhcchhccccchhhh-HHH-------hHhHHhhccchhhhhh-----hhcccccccceeeeeccccchhhc-----
Confidence            5677788887775543333 111       1224556677776655     222233457888888888888753     


Q ss_pred             HHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHHHhhccCCccceeecCCCCCChH
Q 000742          938 STILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKP 1017 (1313)
Q Consensus       938 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~ 1017 (1313)
                      ...+..+++|++|+|++|.|+...      .+..++.|+.|++++|.+-       -...+..++.|+.+++++|.+...
T Consensus       111 ~~~l~~~~~L~~L~ls~N~I~~i~------~l~~l~~L~~L~l~~N~i~-------~~~~~~~l~~L~~l~l~~n~i~~i  177 (414)
T KOG0531|consen  111 ENLLSSLVNLQVLDLSFNKITKLE------GLSTLTLLKELNLSGNLIS-------DISGLESLKSLKLLDLSYNRIVDI  177 (414)
T ss_pred             ccchhhhhcchheecccccccccc------chhhccchhhheeccCcch-------hccCCccchhhhcccCCcchhhhh
Confidence            232666778888888888887421      2344566888888888741       122334466777777777776554


Q ss_pred             HHHHHHHHhhcCCccEEEccCCCCCC
Q 000742         1018 VVDRLCQLAKTSCLTHLMLGCTNLGS 1043 (1313)
Q Consensus      1018 ~~~~l~~l~~~~~L~~L~Ls~n~i~~ 1043 (1313)
                      ...  . +....+|+.+.+++|.|..
T Consensus       178 e~~--~-~~~~~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  178 END--E-LSELISLEELDLGGNSIRE  200 (414)
T ss_pred             hhh--h-hhhccchHHHhccCCchhc
Confidence            331  0 1223446666666666543

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.08  E-value=0.00027  Score=70.86  Aligned_cols=206  Identities=16%  Similarity=0.068  Sum_probs=135.1

Q ss_pred             CcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHh
Q 000742           23 NRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDA  102 (1313)
Q Consensus        23 ~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~  102 (1313)
                      .+.+.|..++..|..|-..|-+.-|.-.|.+++.+.|+      .+.+++.+|..+...|+|+.|.+.| ...+++.|..
T Consensus        60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~------m~~vfNyLG~Yl~~a~~fdaa~eaF-ds~~ELDp~y  132 (297)
T COG4785          60 TDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPD------MPEVFNYLGIYLTQAGNFDAAYEAF-DSVLELDPTY  132 (297)
T ss_pred             ChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCC------cHHHHHHHHHHHHhcccchHHHHHh-hhHhccCCcc
Confidence            45667888999999999999999999999999998844      4899999999999999999999999 9999998877


Q ss_pred             cCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCH
Q 000742          103 SDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNL  182 (1313)
Q Consensus       103 ~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~  182 (1313)
                      +.      +..+.|..++.-        |+++-|.+.+.+-.+-   -...         |. -..|..+-   ...-+.
T Consensus       133 ~Y------a~lNRgi~~YY~--------gR~~LAq~d~~~fYQ~---D~~D---------Pf-R~LWLYl~---E~k~dP  182 (297)
T COG4785         133 NY------AHLNRGIALYYG--------GRYKLAQDDLLAFYQD---DPND---------PF-RSLWLYLN---EQKLDP  182 (297)
T ss_pred             hH------HHhccceeeeec--------CchHhhHHHHHHHHhc---CCCC---------hH-HHHHHHHH---HhhCCH
Confidence            53      445666665544        8888888777654432   1111         11 11222221   223456


Q ss_pred             HHHHHHH-HHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHH
Q 000742          183 EEAKKFL-IRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKI-EHCQGEAKGYINLGELHY  260 (1313)
Q Consensus       183 ~~A~~~~-~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~-~~~~~~~~~~~~la~~~~  260 (1313)
                      .+|...+ +++....++      ......+-+.+|.+-.        ...++++.+..... ........+|+.+|..|.
T Consensus       183 ~~A~tnL~qR~~~~d~e------~WG~~iV~~yLgkiS~--------e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l  248 (297)
T COG4785         183 KQAKTNLKQRAEKSDKE------QWGWNIVEFYLGKISE--------ETLMERLKADATDNTSLAEHLTETYFYLGKYYL  248 (297)
T ss_pred             HHHHHHHHHHHHhccHh------hhhHHHHHHHHhhccH--------HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHh
Confidence            6666544 344333211      2222222333332211        12233333333211 112356778999999999


Q ss_pred             HhcCHHHHHHHHHHHHHHH
Q 000742          261 RVQKYDEAILCYQKALNLA  279 (1313)
Q Consensus       261 ~~g~~~~A~~~~~kal~~~  279 (1313)
                      ..|+.++|...|+-|+...
T Consensus       249 ~~G~~~~A~~LfKLaiann  267 (297)
T COG4785         249 SLGDLDEATALFKLAVANN  267 (297)
T ss_pred             ccccHHHHHHHHHHHHHHh
Confidence            9999999999999887643

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.07  E-value=0.00068  Score=71.27  Aligned_cols=185  Identities=15%  Similarity=0.114  Sum_probs=128.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchh
Q 000742          166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHC  245 (1313)
Q Consensus       166 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~  245 (1313)
                      +..+++-|....+.|+|++|+.+|+......+-      .+..-.+...++.++++.+++++|+.++++-+...|.   +
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~------s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~---~  104 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPF------SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT---H  104 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC---C
Confidence            567777888888899999999999998866443      5556788999999999999999999999999998874   4


Q ss_pred             hhHHHHHHHHHHHHHHh-----cCHH---HHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000742          246 QGEAKGYINLGELHYRV-----QKYD---EAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLK  317 (1313)
Q Consensus       246 ~~~~~~~~~la~~~~~~-----g~~~---~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~  317 (1313)
                      ++...+++..|..++..     .+..   +|+..+++.++-.|...-   ...           |...+..+        
T Consensus       105 ~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y---a~d-----------A~~~i~~~--------  162 (254)
T COG4105         105 PNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRY---APD-----------AKARIVKL--------  162 (254)
T ss_pred             CChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcc---hhh-----------HHHHHHHH--------
Confidence            56677788888876543     2333   344444444444433221   110           00000000        


Q ss_pred             HHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHH
Q 000742          318 KLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFN  397 (1313)
Q Consensus       318 ~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~  397 (1313)
                                                                    .            ...+.--..+|..|.+.|.+.
T Consensus       163 ----------------------------------------------~------------d~LA~~Em~IaryY~kr~~~~  184 (254)
T COG4105         163 ----------------------------------------------N------------DALAGHEMAIARYYLKRGAYV  184 (254)
T ss_pred             ----------------------------------------------H------------HHHHHHHHHHHHHHHHhcChH
Confidence                                                          0            001122344799999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 000742          398 KAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDA  442 (1313)
Q Consensus       398 ~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~  442 (1313)
                      .|+..++..++-.+   +.+....++..+..+|..+|-.++|...
T Consensus       185 AA~nR~~~v~e~y~---~t~~~~eaL~~l~eaY~~lgl~~~a~~~  226 (254)
T COG4105         185 AAINRFEEVLENYP---DTSAVREALARLEEAYYALGLTDEAKKT  226 (254)
T ss_pred             HHHHHHHHHHhccc---cccchHHHHHHHHHHHHHhCChHHHHHH
Confidence            99999999887654   3445667888999999999999888754

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.05  E-value=0.00068  Score=73.82  Aligned_cols=229  Identities=24%  Similarity=0.295  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHH
Q 000742            8 MSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDA   87 (1313)
Q Consensus         8 ~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A   87 (1313)
                      +..+...+..+................+..+...+++..+...+..+...    .........+...|..+...+++.+|
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (291)
T COG0457          39 LAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALEL----ELLPNLAEALLNLGLLLEALGKYEEA  114 (291)
T ss_pred             HHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh----hhccchHHHHHHHHHHHHHHhhHHHH
Confidence            33444444444444333212233556666666777777777766666553    01122355666666677677777777


Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-HHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHH
Q 000742           88 LIYQVKKHLELAKDASDLVEQQRACTQLGR-TYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYI  166 (1313)
Q Consensus        88 ~~~~~~kal~l~~~~~~~~~~a~a~~~lg~-~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~  166 (1313)
                      +..+ .+++...+....      .....+. ++...        ++++.|...|.+++.....   .         ....
T Consensus       115 ~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~--------~~~~~a~~~~~~~~~~~~~---~---------~~~~  167 (291)
T COG0457         115 LELL-EKALALDPDPDL------AEALLALGALYEL--------GDYEEALELYEKALELDPE---L---------NELA  167 (291)
T ss_pred             HHHH-HHHHcCCCCcch------HHHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCC---c---------cchH
Confidence            7666 666654443311      1122222 45544        6677777777776432110   0         0234


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhh
Q 000742          167 DAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQ  246 (1313)
Q Consensus       167 ~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~  246 (1313)
                      ..+...+..+...+++++|+..+.+++...+..        ....+..++..+...+++++|+.++.+++...+      
T Consensus       168 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~------  233 (291)
T COG0457         168 EALLALGALLEALGRYEEALELLEKALKLNPDD--------DAEALLNLGLLYLKLGKYEEALEYYEKALELDP------  233 (291)
T ss_pred             HHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc--------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCc------
Confidence            445555555666677777777777776663320        345566667777777777777777777766654      


Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 000742          247 GEAKGYINLGELHYRVQKYDEAILCYQKALNLAQS  281 (1313)
Q Consensus       247 ~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~  281 (1313)
                      .....+..++..+...+.+++|...+.+++...+.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         234 DNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             ccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            23445555555555555566777666666666554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.04  E-value=2e-06  Score=102.54  Aligned_cols=123  Identities=25%  Similarity=0.243  Sum_probs=74.8

Q ss_pred             eeecCCCCCChHHHHHHHHHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCC-cccEEEccCCCCChhHHHHHHHHHhc
Q 000742         1006 ELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQ-ESVKLDLSYCGLESTCIHKFTASVSL 1084 (1313)
Q Consensus      1006 ~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~ 1084 (1313)
                      .|.++.+.+....    ..+...+.++.|++.+|.+++..     ... .... +|+.|++++|.+...     +..+..
T Consensus        97 ~l~~~~~~~~~~~----~~~~~~~~l~~L~l~~n~i~~i~-----~~~-~~~~~nL~~L~l~~N~i~~l-----~~~~~~  161 (394)
T COG4886          97 SLDLNLNRLRSNI----SELLELTNLTSLDLDNNNITDIP-----PLI-GLLKSNLKELDLSDNKIESL-----PSPLRN  161 (394)
T ss_pred             eeeccccccccCc----hhhhcccceeEEecCCcccccCc-----ccc-ccchhhcccccccccchhhh-----hhhhhc
Confidence            4566666552221    12222356888888888876532     111 1222 688888888887664     234567


Q ss_pred             CCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEccCCC
Q 000742         1085 VHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNA 1154 (1313)
Q Consensus      1085 ~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~ 1154 (1313)
                      +++|+.|++++|++.+..... +..     ..|+.|++++|+++.     ++..+.....|++|.+++|.
T Consensus       162 l~~L~~L~l~~N~l~~l~~~~-~~~-----~~L~~L~ls~N~i~~-----l~~~~~~~~~L~~l~~~~N~  220 (394)
T COG4886         162 LPNLKNLDLSFNDLSDLPKLL-SNL-----SNLNNLDLSGNKISD-----LPPEIELLSALEELDLSNNS  220 (394)
T ss_pred             cccccccccCCchhhhhhhhh-hhh-----hhhhheeccCCcccc-----CchhhhhhhhhhhhhhcCCc
Confidence            788888888888887543322 111     137888888888873     44443444568888888884

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.04  E-value=4.7e-05  Score=91.80  Aligned_cols=142  Identities=15%  Similarity=0.102  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCC-------
Q 000742          109 QRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDN-------  181 (1313)
Q Consensus       109 a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~-------  181 (1313)
                      +..++..|.-|...     .+.+...+|+.+|++|+++               .|+++.++..++.+|.....       
T Consensus       339 Ay~~~lrg~~~~~~-----~~~~~~~~A~~lle~Ai~l---------------dP~~a~a~A~la~~~~~~~~~~~~~~~  398 (517)
T PRK10153        339 ALTLFYQAHHYLNS-----GDAKSLNKASDLLEEILKS---------------EPDFTYAQAEKALADIVRHSQQPLDEK  398 (517)
T ss_pred             HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHh---------------CCCcHHHHHHHHHHHHHHHhcCCccHH
Confidence            34445556555433     2346788999999999998               56778888888877755422       


Q ss_pred             -HHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHH
Q 000742          182 -LEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHY  260 (1313)
Q Consensus       182 -~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~  260 (1313)
                       ..+|.....+++.+       ...+..+.+|..+|..+...|++++|..++++|+++.+      . +.+|..+|.++.
T Consensus       399 ~l~~a~~~~~~a~al-------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p------s-~~a~~~lG~~~~  464 (517)
T PRK10153        399 QLAALSTELDNIVAL-------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM------S-WLNYVLLGKVYE  464 (517)
T ss_pred             HHHHHHHHHHHhhhc-------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------C-HHHHHHHHHHHH
Confidence             33444444444443       11222357888899999999999999999999999864      3 679999999999


Q ss_pred             HhcCHHHHHHHHHHHHHHHHHccC
Q 000742          261 RVQKYDEAILCYQKALNLAQSMED  284 (1313)
Q Consensus       261 ~~g~~~~A~~~~~kal~~~~~~~~  284 (1313)
                      ..|++++|++.|++|+.+.|..+.
T Consensus       465 ~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        465 LKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             HcCCHHHHHHHHHHHHhcCCCCch
Confidence            999999999999999999987664

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.04  E-value=1.8e-05  Score=88.13  Aligned_cols=219  Identities=13%  Similarity=0.010  Sum_probs=119.0

Q ss_pred             chhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742            4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH   83 (1313)
Q Consensus         4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~   83 (1313)
                      ..|+|..++.-+.  ....+..........+.+.|...|+++..+.-...         .......+...++..+...++
T Consensus        13 y~G~Y~~~i~e~~--~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---------~~~~~l~av~~la~y~~~~~~   81 (290)
T PF04733_consen   13 YLGNYQQCINEAS--LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---------SSSPELQAVRLLAEYLSSPSD   81 (290)
T ss_dssp             CTT-HHHHCHHHH--CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---------TSSCCCHHHHHHHHHHCTSTT
T ss_pred             HhhhHHHHHHHhh--ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---------CCChhHHHHHHHHHHHhCccc
Confidence            3577888886555  22233344455567888889999998876654421         112224455556665544444


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhH
Q 000742           84 FKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLK  163 (1313)
Q Consensus        84 ~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p  163 (1313)
                      .+.++..+ +..+.-.....+    .......|.+|...        |++++|++.+.+.-.                  
T Consensus        82 ~e~~l~~l-~~~~~~~~~~~~----~~~~~~~A~i~~~~--------~~~~~AL~~l~~~~~------------------  130 (290)
T PF04733_consen   82 KESALEEL-KELLADQAGESN----EIVQLLAATILFHE--------GDYEEALKLLHKGGS------------------  130 (290)
T ss_dssp             HHCHHHHH-HHCCCTS---CH----HHHHHHHHHHHCCC--------CHHHHHHCCCTTTTC------------------
T ss_pred             hHHHHHHH-HHHHHhcccccc----HHHHHHHHHHHHHc--------CCHHHHHHHHHccCc------------------
Confidence            44444444 322211111000    11223344444433        777777776654310                  


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHH
Q 000742          164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELR--MWDKSREHIEQDIIICKK  241 (1313)
Q Consensus       164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g--~~~~A~~~~~kal~~~~~  241 (1313)
                        .+.......+|..+++++.|.+.++.+.++.       ++.  ..+...-|.+....|  ++.+|...|++..+.++ 
T Consensus       131 --lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~-------eD~--~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~-  198 (290)
T PF04733_consen  131 --LELLALAVQILLKMNRPDLAEKELKNMQQID-------EDS--ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFG-  198 (290)
T ss_dssp             --HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS-------CCH--HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--
T ss_pred             --ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CcH--HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccC-
Confidence              2445556677888888888888887765542       221  122222222333333  57888888877544332 


Q ss_pred             hchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 000742          242 IEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQS  281 (1313)
Q Consensus       242 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~  281 (1313)
                           .....+..+|.++..+|+|++|...+++|++..+.
T Consensus       199 -----~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~  233 (290)
T PF04733_consen  199 -----STPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN  233 (290)
T ss_dssp             ------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred             -----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence                 45677788888888888888888888888765543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.03  E-value=6.4e-06  Score=86.22  Aligned_cols=212  Identities=19%  Similarity=0.183  Sum_probs=121.0

Q ss_pred             ccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHh
Q 000742         1031 LTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLL 1110 (1313)
Q Consensus      1031 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l 1110 (1313)
                      +..|.+.++.|...|....   +...++.++.|||.+|.|++.  ..++..+.++|.|+.|+||.|++... +..+-   
T Consensus        47 ~ellvln~~~id~~gd~~~---~~~~~~~v~elDL~~N~iSdW--seI~~ile~lP~l~~LNls~N~L~s~-I~~lp---  117 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVML---FGSSVTDVKELDLTGNLISDW--SEIGAILEQLPALTTLNLSCNSLSSD-IKSLP---  117 (418)
T ss_pred             hhhheecCCCCCcchhHHH---HHHHhhhhhhhhcccchhccH--HHHHHHHhcCccceEeeccCCcCCCc-cccCc---
Confidence            4455666666766654332   223346789999999999876  33566678899999999999998632 11211   


Q ss_pred             cCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEccCCCCChh-----hhhhhcccccccCCccccccccccccc
Q 000742         1111 MNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKEL-----TLQQNLSSVNSENLQPALKTSDCVSKE 1185 (1313)
Q Consensus      1111 ~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~-----~~~~~l~~l~~~~l~~n~~~~~~~~~~ 1185 (1313)
                       -|-.+|++|.|.+..+.-..   ....+...|.+++|.+|.|.+...     -..-..+.+..+.+..|...-     |
T Consensus       118 -~p~~nl~~lVLNgT~L~w~~---~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~-----w  188 (418)
T KOG2982|consen  118 -LPLKNLRVLVLNGTGLSWTQ---STSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQL-----W  188 (418)
T ss_pred             -ccccceEEEEEcCCCCChhh---hhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHH-----H
Confidence             12346999999999886443   445567777888888888843221     111111222233333331111     0


Q ss_pred             ccccccccccccCCCCcccccccCCccchhhhccccCCCCcccccccCCccchhhHH-HHHHHHhccccCceecCCCCCC
Q 000742         1186 VDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFDNSCTSSCQKNSSFECQFVQ-ELSSAIGMAKPLQLLDLSNNGF 1264 (1313)
Q Consensus      1186 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~l~~~l~~~~~L~~LdLs~N~l 1264 (1313)
                      .     ..|....-.+++..+-+..|+++.+..-.  .+.-.+.+.-|+|+.|+|-. .-.+.+..+++|..|-+++|++
T Consensus       189 ~-----~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek--~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl  261 (418)
T KOG2982|consen  189 L-----NKNKLSRIFPNVNSVFVCEGPLKTESSEK--GSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPL  261 (418)
T ss_pred             H-----HHHhHHhhcccchheeeecCcccchhhcc--cCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcc
Confidence            0     01111222355566666666665443211  11111244457777777652 2245677788888888888887


Q ss_pred             CHH
Q 000742         1265 STQ 1267 (1313)
Q Consensus      1265 ~~~ 1267 (1313)
                      .+.
T Consensus       262 ~d~  264 (418)
T KOG2982|consen  262 SDP  264 (418)
T ss_pred             ccc
Confidence            763

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.00  E-value=2.6e-05  Score=71.05  Aligned_cols=97  Identities=29%  Similarity=0.457  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHH
Q 000742           70 TCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQT  149 (1313)
Q Consensus        70 ~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~  149 (1313)
                      +++.+|.++...|++++|+.++ +++++..+...      .++..+|.+|...        +++++|+.++++++.... 
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~--------~~~~~a~~~~~~~~~~~~-   65 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYY-EKALELDPDNA------DAYYNLAAAYYKL--------GKYEEALEDYEKALELDP-   65 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHH-HHHHhcCCccH------HHHHHHHHHHHHH--------HHHHHHHHHHHHHHhCCC-
Confidence            5778999999999999999999 99988765542      5678899999987        999999999999887622 


Q ss_pred             hccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHh
Q 000742          150 LKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEIC  196 (1313)
Q Consensus       150 ~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~  196 (1313)
                                    ....++..+|.++...|++++|..++.++++..
T Consensus        66 --------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~   98 (100)
T cd00189          66 --------------DNAKAYYNLGLAYYKLGKYEEALEAYEKALELD   98 (100)
T ss_pred             --------------cchhHHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence                          224688999999999999999999999988763

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.98  E-value=0.00015  Score=68.57  Aligned_cols=102  Identities=18%  Similarity=0.120  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000742          110 RACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFL  189 (1313)
Q Consensus       110 ~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~  189 (1313)
                      .+.+.+|.++..+        |+.++|+.+|++++...  +.          .+....++..+|..|..+|++++|+..+
T Consensus         2 ~~~~~~A~a~d~~--------G~~~~Ai~~Y~~Al~~g--L~----------~~~~~~a~i~lastlr~LG~~deA~~~L   61 (120)
T PF12688_consen    2 RALYELAWAHDSL--------GREEEAIPLYRRALAAG--LS----------GADRRRALIQLASTLRNLGRYDEALALL   61 (120)
T ss_pred             chHHHHHHHHHhc--------CCHHHHHHHHHHHHHcC--CC----------chHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4678899999988        99999999999998751  11          2355789999999999999999999999


Q ss_pred             HHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000742          190 IRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDII  237 (1313)
Q Consensus       190 ~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~  237 (1313)
                      ++++.-++.      ++....+...++.++...|++++|+..+-.++.
T Consensus        62 ~~~~~~~p~------~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   62 EEALEEFPD------DELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCCC------ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            999876543      334556667789999999999999999987765

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.92  E-value=0.027  Score=61.94  Aligned_cols=302  Identities=13%  Similarity=0.012  Sum_probs=197.4

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 000742           33 VIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRAC  112 (1313)
Q Consensus        33 ~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~  112 (1313)
                      .-|.+....|+-..|.+.-.++-.+..    .+...-++..-++.-.-.|+|+.|.+-| +-++. .|..       + +
T Consensus        89 StGliAagAGda~lARkmt~~~~~lls----sDqepLIhlLeAQaal~eG~~~~Ar~kf-eAMl~-dPEt-------R-l  154 (531)
T COG3898          89 STGLIAAGAGDASLARKMTARASKLLS----SDQEPLIHLLEAQAALLEGDYEDARKKF-EAMLD-DPET-------R-L  154 (531)
T ss_pred             hhhhhhhccCchHHHHHHHHHHHhhhh----ccchHHHHHHHHHHHHhcCchHHHHHHH-HHHhc-ChHH-------H-H
Confidence            456777788999999999888876552    2334566667778888889999999998 65553 2221       1 1


Q ss_pred             HHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000742          113 TQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRG  192 (1313)
Q Consensus       113 ~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~a  192 (1313)
                      ..|--.|..-     ...|..+.|.+|-+.|.....               ....+....-......|+++.|++..+..
T Consensus       155 lGLRgLyleA-----qr~GareaAr~yAe~Aa~~Ap---------------~l~WA~~AtLe~r~~~gdWd~AlkLvd~~  214 (531)
T COG3898         155 LGLRGLYLEA-----QRLGAREAARHYAERAAEKAP---------------QLPWAARATLEARCAAGDWDGALKLVDAQ  214 (531)
T ss_pred             HhHHHHHHHH-----HhcccHHHHHHHHHHHHhhcc---------------CCchHHHHHHHHHHhcCChHHHHHHHHHH
Confidence            2222222221     133899999999999987744               33556666666778889999999999877


Q ss_pred             HhHhhhhccCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHH
Q 000742          193 LEICNEEEVSEDDDGRSRLHHNLGNVYME-LRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILC  271 (1313)
Q Consensus       193 l~~~~~~~~~~~~~~~~~~~~~lg~~y~~-~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  271 (1313)
                      .....-   ..+......+-..-+..... .-+...|...-.++.++.+      +..-+-..-+..+++.|+..++-..
T Consensus       215 ~~~~vi---e~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~p------dlvPaav~AAralf~d~~~rKg~~i  285 (531)
T COG3898         215 RAAKVI---EKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAP------DLVPAAVVAARALFRDGNLRKGSKI  285 (531)
T ss_pred             HHHHhh---chhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC------ccchHHHHHHHHHHhccchhhhhhH
Confidence            654221   11222233333333333322 2368888888888888866      6667777788999999999999999


Q ss_pred             HHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHH
Q 000742          272 YQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSS  351 (1313)
Q Consensus       272 ~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~  351 (1313)
                      ++.+-+..|.-     .+..+|...-.-                                                    
T Consensus       286 lE~aWK~ePHP-----~ia~lY~~ar~g----------------------------------------------------  308 (531)
T COG3898         286 LETAWKAEPHP-----DIALLYVRARSG----------------------------------------------------  308 (531)
T ss_pred             HHHHHhcCCCh-----HHHHHHHHhcCC----------------------------------------------------
Confidence            99887765421     122222111110                                                    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Q 000742          352 MIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLD  431 (1313)
Q Consensus       352 ~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~  431 (1313)
                           +.+++-++++..+.   ...++.++.....++.-+.-|+|..|..--+.+..+.+       ...+|..|+.+-.
T Consensus       309 -----dta~dRlkRa~~L~---slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-------res~~lLlAdIee  373 (531)
T COG3898         309 -----DTALDRLKRAKKLE---SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP-------RESAYLLLADIEE  373 (531)
T ss_pred             -----CcHHHHHHHHHHHH---hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-------hhhHHHHHHHHHh
Confidence                 11112222222221   23456667888889999999999999988888776644       4556888898887


Q ss_pred             Hc-CCHHHHHHHHHHHHHH
Q 000742          432 SN-GDWAGALDAFQEGYRI  449 (1313)
Q Consensus       432 ~~-g~~~~A~~~~~kAl~i  449 (1313)
                      .. |+-.++...+-++++-
T Consensus       374 AetGDqg~vR~wlAqav~A  392 (531)
T COG3898         374 AETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             hccCchHHHHHHHHHHhcC
Confidence            65 9999998888888765

>PRK15331 chaperone protein SicA; Provisional

Probab=97.90  E-value=6.1e-05  Score=73.71  Aligned_cols=101  Identities=14%  Similarity=0.118  Sum_probs=88.9

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000742          162 LKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKK  241 (1313)
Q Consensus       162 ~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~  241 (1313)
                      .+...+..+..|.-++..|++++|...|+-....         ++.....+..||.++..+++|++|+..|-.|..+.. 
T Consensus        33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~---------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-  102 (165)
T PRK15331         33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY---------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-  102 (165)
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-
Confidence            3467788899999999999999999999887665         333466789999999999999999999999998866 


Q ss_pred             hchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 000742          242 IEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALN  277 (1313)
Q Consensus       242 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~  277 (1313)
                           ..+...+..|.+|..+|+.++|+.+|+.+++
T Consensus       103 -----~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        103 -----NDYRPVFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             -----CCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence                 5566689999999999999999999999998

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.90  E-value=0.00012  Score=81.82  Aligned_cols=253  Identities=9%  Similarity=0.028  Sum_probs=144.4

Q ss_pred             HHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCC
Q 000742           77 VYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPAT  156 (1313)
Q Consensus        77 ~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~  156 (1313)
                      -++..|+|..++.-+ .    ..+  .+..........+.+.|..+        |+++..+.-.       .+..  .+.
T Consensus        10 n~fy~G~Y~~~i~e~-~----~~~--~~~~~~~e~~~~~~Rs~iAl--------g~~~~vl~ei-------~~~~--~~~   65 (290)
T PF04733_consen   10 NQFYLGNYQQCINEA-S----LKS--FSPENKLERDFYQYRSYIAL--------GQYDSVLSEI-------KKSS--SPE   65 (290)
T ss_dssp             HHHCTT-HHHHCHHH-H----CHT--STCHHHHHHHHHHHHHHHHT--------T-HHHHHHHS--------TTS--SCC
T ss_pred             HHHHhhhHHHHHHHh-h----ccC--CCchhHHHHHHHHHHHHHHc--------CChhHHHHHh-------ccCC--Chh
Confidence            355689999988666 4    111  12223345566777788777        7665443222       1111  111


Q ss_pred             CcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000742          157 SRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDI  236 (1313)
Q Consensus       157 ~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal  236 (1313)
                               ..+...++..+...++.+.++..++..+.-       ........+....|.+|...|++++|++.+.+. 
T Consensus        66 ---------l~av~~la~y~~~~~~~e~~l~~l~~~~~~-------~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-  128 (290)
T PF04733_consen   66 ---------LQAVRLLAEYLSSPSDKESALEELKELLAD-------QAGESNEIVQLLAATILFHEGDYEEALKLLHKG-  128 (290)
T ss_dssp             ---------CHHHHHHHHHHCTSTTHHCHHHHHHHCCCT-------S---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-
T ss_pred             ---------HHHHHHHHHHHhCccchHHHHHHHHHHHHh-------ccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-
Confidence                     234455565555545666666655544322       112123345667788898999999999888764 


Q ss_pred             HHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000742          237 IICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNL  316 (1313)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~  316 (1313)
                                ...........+|..+++++.|.+.++.+.++.    +.. .+.+    +...                 
T Consensus       129 ----------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~----eD~-~l~q----La~a-----------------  172 (290)
T PF04733_consen  129 ----------GSLELLALAVQILLKMNRPDLAEKELKNMQQID----EDS-ILTQ----LAEA-----------------  172 (290)
T ss_dssp             ----------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS----CCH-HHHH----HHHH-----------------
T ss_pred             ----------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CcH-HHHH----HHHH-----------------
Confidence                      223445556788999999999998887765432    221 1111    0000                 


Q ss_pred             HHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-hhhHHHHHHHHHHHHHhhC
Q 000742          317 KKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDK-GKLSDSFLVIGESYQKLRK  395 (1313)
Q Consensus       317 ~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~-~~~a~~~~~lg~~y~~~g~  395 (1313)
                           .+....|                        ...+.+|..+|++.       .+. +..+.++..+|.++..+|+
T Consensus       173 -----wv~l~~g------------------------~e~~~~A~y~f~El-------~~~~~~t~~~lng~A~~~l~~~~  216 (290)
T PF04733_consen  173 -----WVNLATG------------------------GEKYQDAFYIFEEL-------SDKFGSTPKLLNGLAVCHLQLGH  216 (290)
T ss_dssp             -----HHHHHHT------------------------TTCCCHHHHHHHHH-------HCCS--SHHHHHHHHHHHHHCT-
T ss_pred             -----HHHHHhC------------------------chhHHHHHHHHHHH-------HhccCCCHHHHHHHHHHHHHhCC
Confidence                 0000000                        01233333333332       222 3456788899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHH
Q 000742          396 FNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDW-AGALDAFQEGYR  448 (1313)
Q Consensus       396 ~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~-~~A~~~~~kAl~  448 (1313)
                      |++|...+++|++.      .+..+.++.+++.+...+|+. +.+.+++.+...
T Consensus       217 ~~eAe~~L~~al~~------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~  264 (290)
T PF04733_consen  217 YEEAEELLEEALEK------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ  264 (290)
T ss_dssp             HHHHHHHHHHHCCC-------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHh------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence            99999999998853      346678899999999999988 555566665443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.89  E-value=1.6e-05  Score=67.00  Aligned_cols=63  Identities=24%  Similarity=0.404  Sum_probs=57.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 000742          213 HNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQS  281 (1313)
Q Consensus       213 ~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~  281 (1313)
                      +.+|..++..|++++|+..|+++++..+      ....+++.+|.++..+|++++|+.+|+++++..|.
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~   63 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDP------DNPEAWYLLGRILYQQGRYDEALAYYERALELDPD   63 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCST------THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            3689999999999999999999999865      78999999999999999999999999999998775

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.89  E-value=4.9e-05  Score=94.33  Aligned_cols=146  Identities=20%  Similarity=0.143  Sum_probs=73.8

Q ss_pred             CCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHHH
Q 000742          917 TRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLV  996 (1313)
Q Consensus       917 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~  996 (1313)
                      .+|++||++|...-..+.  ..+.-..+|+|++|.+++-.+....+.   ....+.++|..||+|+.++ +.      +.
T Consensus       122 ~nL~~LdI~G~~~~s~~W--~~kig~~LPsL~sL~i~~~~~~~~dF~---~lc~sFpNL~sLDIS~TnI-~n------l~  189 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGW--PKKIGTMLPSLRSLVISGRQFDNDDFS---QLCASFPNLRSLDISGTNI-SN------LS  189 (699)
T ss_pred             HhhhhcCccccchhhccH--HHHHhhhCcccceEEecCceecchhHH---HHhhccCccceeecCCCCc-cC------cH
Confidence            466667766653322211  112222456666776666555543322   2334566677777776663 11      13


Q ss_pred             hhccCCccceeecCCCCCChHHHHHHHHHhhcCCccEEEccCCCCCCch--HHHHHHHHhcCCCcccEEEccCCCCChhH
Q 000742          997 KLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDG--SLQLVESLFSRAQESVKLDLSYCGLESTC 1074 (1313)
Q Consensus       997 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~i~~~~--~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 1074 (1313)
                      +++.+++|+.|.+.+-.+..  ...+..+...++|+.||+|.....+..  +....+. ...+|+|+.||.|+..++...
T Consensus       190 GIS~LknLq~L~mrnLe~e~--~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec-~~~LpeLrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  190 GISRLKNLQVLSMRNLEFES--YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLEC-GMVLPELRFLDCSGTDINEEI  266 (699)
T ss_pred             HHhccccHHHHhccCCCCCc--hhhHHHHhcccCCCeeeccccccccchHHHHHHHHh-cccCccccEEecCCcchhHHH
Confidence            45566666666666655543  223334444555777777665443322  1111111 123456666666666665554


Q ss_pred             HHH
Q 000742         1075 IHK 1077 (1313)
Q Consensus      1075 ~~~ 1077 (1313)
                      ...
T Consensus       267 le~  269 (699)
T KOG3665|consen  267 LEE  269 (699)
T ss_pred             HHH
Confidence            333

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.89  E-value=6.9e-05  Score=82.00  Aligned_cols=105  Identities=12%  Similarity=0.025  Sum_probs=88.0

Q ss_pred             HHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHH
Q 000742           29 RWANVIGDIL-KNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVE  107 (1313)
Q Consensus        29 ~~~~~lg~~y-~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~  107 (1313)
                      ...+..|..+ +..|+|++|+..|++.++.+|..   .....+++++|.+|+..|+|++|+.+| +++++.+|+.+.   
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s---~~a~~A~y~LG~~y~~~g~~~~A~~~f-~~vv~~yP~s~~---  215 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS---TYQPNANYWLGQLNYNKGKKDDAAYYF-ASVVKNYPKSPK---  215 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC---cchHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHCCCCcc---
Confidence            3456666665 66799999999999999988543   344689999999999999999999999 999998876544   


Q ss_pred             HHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHH
Q 000742          108 QQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQ  148 (1313)
Q Consensus       108 ~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~  148 (1313)
                      ...+++.+|.+|..+        |++++|+.+|+++++.+.
T Consensus       216 ~~dAl~klg~~~~~~--------g~~~~A~~~~~~vi~~yP  248 (263)
T PRK10803        216 AADAMFKVGVIMQDK--------GDTAKAKAVYQQVIKKYP  248 (263)
T ss_pred             hhHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHCc
Confidence            347899999999988        999999999999987743

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.87  E-value=0.0005  Score=63.13  Aligned_cols=90  Identities=23%  Similarity=0.171  Sum_probs=78.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHH
Q 000742          131 YSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSR  210 (1313)
Q Consensus       131 ~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  210 (1313)
                      |+.+.|++.|.+++.++               |..+.+|++.|..|.-+|+.++|++-+++|+++...     .......
T Consensus        57 g~Ld~AlE~F~qal~l~---------------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~-----~trtacq  116 (175)
T KOG4555|consen   57 GDLDGALELFGQALCLA---------------PERASAYNNRAQALRLQGDDEEALDDLNKALELAGD-----QTRTACQ  116 (175)
T ss_pred             cchHHHHHHHHHHHHhc---------------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc-----cchHHHH
Confidence            99999999999999984               455889999999999999999999999999999543     2455677


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742          211 LHHNLGNVYMELRMWDKSREHIEQDIIICK  240 (1313)
Q Consensus       211 ~~~~lg~~y~~~g~~~~A~~~~~kal~~~~  240 (1313)
                      ++...|.+|..+|+-+.|...|+.|.++..
T Consensus       117 a~vQRg~lyRl~g~dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  117 AFVQRGLLYRLLGNDDAARADFEAAAQLGS  146 (175)
T ss_pred             HHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence            899999999999999999999999988754

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.85  E-value=0.00019  Score=86.68  Aligned_cols=142  Identities=9%  Similarity=-0.103  Sum_probs=104.0

Q ss_pred             cCcHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh--------HHHHHH
Q 000742           22 GNRQEEARWANVIGDILKNRGE---YVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF--------KDALIY   90 (1313)
Q Consensus        22 ~~~~~~a~~~~~lg~~y~~~g~---~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~--------~~A~~~   90 (1313)
                      .+....|.-++..|..|...++   +.+|+.+|++|+++.|..      +.++-.++.+|.....+        .+|...
T Consensus       333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~------a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~  406 (517)
T PRK10153        333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDF------TYAQAEKALADIVRHSQQPLDEKQLAALSTE  406 (517)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence            4556677778888988877655   889999999999998433      67777777777554322        233333


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHH
Q 000742           91 QVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHN  170 (1313)
Q Consensus        91 ~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~  170 (1313)
                      . ++++.+.....+    ..++..+|..+...        |++++|..++++|+.+.               |. +.+|.
T Consensus       407 ~-~~a~al~~~~~~----~~~~~ala~~~~~~--------g~~~~A~~~l~rAl~L~---------------ps-~~a~~  457 (517)
T PRK10153        407 L-DNIVALPELNVL----PRIYEILAVQALVK--------GKTDEAYQAINKAIDLE---------------MS-WLNYV  457 (517)
T ss_pred             H-HHhhhcccCcCC----hHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHcC---------------CC-HHHHH
Confidence            3 333333111111    35677777777655        99999999999999982               22 57999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhHhhh
Q 000742          171 NIGMLQMELDNLEEAKKFLIRGLEICNE  198 (1313)
Q Consensus       171 ~la~~y~~~g~~~~A~~~~~~al~~~~~  198 (1313)
                      .+|.++...|++++|++.|++|+.+.+.
T Consensus       458 ~lG~~~~~~G~~~eA~~~~~~A~~L~P~  485 (517)
T PRK10153        458 LLGKVYELKGDNRLAADAYSTAFNLRPG  485 (517)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999998544

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.85  E-value=0.01  Score=64.35  Aligned_cols=198  Identities=25%  Similarity=0.297  Sum_probs=118.5

Q ss_pred             hCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 000742           41 RGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYY  120 (1313)
Q Consensus        41 ~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~  120 (1313)
                      .+.+..+...+..++.....    ..........+..+...+++..+...+ ..++..    .........+..++..+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~  106 (291)
T COG0457          36 LGELAEALELLEEALELLPN----SDLAGLLLLLALALLKLGRLEEALELL-EKALEL----ELLPNLAEALLNLGLLLE  106 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCcc----ccchHHHHHHHHHHHHcccHHHHHHHH-HHHHhh----hhccchHHHHHHHHHHHH
Confidence            45566666666665544321    012466777888888888888888887 766654    111122345566666666


Q ss_pred             HHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhHhhhh
Q 000742          121 EMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGM-LQMELDNLEEAKKFLIRGLEICNEE  199 (1313)
Q Consensus       121 ~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~-~y~~~g~~~~A~~~~~~al~~~~~~  199 (1313)
                      ..        +.+..|+..+.++.......               .......+. ++...|++++|...+.+++...+. 
T Consensus       107 ~~--------~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-  162 (291)
T COG0457         107 AL--------GKYEEALELLEKALALDPDP---------------DLAEALLALGALYELGDYEEALELYEKALELDPE-  162 (291)
T ss_pred             HH--------hhHHHHHHHHHHHHcCCCCc---------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-
Confidence            55        66666666666665542111               112222333 677778888888888877553110 


Q ss_pred             ccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 000742          200 EVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLA  279 (1313)
Q Consensus       200 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~  279 (1313)
                           .......+...+..+...++++.|+..+.+++...+..     ....+..++..+...+++++|+..+.+++...
T Consensus       163 -----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  232 (291)
T COG0457         163 -----LNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-----DAEALLNLGLLYLKLGKYEEALEYYEKALELD  232 (291)
T ss_pred             -----ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-----chHHHHHhhHHHHHcccHHHHHHHHHHHHhhC
Confidence                 02244455555666777777777777777777775511     45666677777777777777777777766665


Q ss_pred             HH
Q 000742          280 QS  281 (1313)
Q Consensus       280 ~~  281 (1313)
                      +.
T Consensus       233 ~~  234 (291)
T COG0457         233 PD  234 (291)
T ss_pred             cc
Confidence            53

>PLN03150 hypothetical protein; Provisional

Probab=97.82  E-value=1.9e-05  Score=98.62  Aligned_cols=107  Identities=26%  Similarity=0.312  Sum_probs=67.7

Q ss_pred             cCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHHHhh
Q 000742          919 LGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKL  998 (1313)
Q Consensus       919 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l  998 (1313)
                      ++.|+|++|.+...    ++..+..+++|+.|+|++|.|++    .++..+..+++|+.|+|++|. +++.    ++..+
T Consensus       420 v~~L~L~~n~L~g~----ip~~i~~L~~L~~L~Ls~N~l~g----~iP~~~~~l~~L~~LdLs~N~-lsg~----iP~~l  486 (623)
T PLN03150        420 IDGLGLDNQGLRGF----IPNDISKLRHLQSINLSGNSIRG----NIPPSLGSITSLEVLDLSYNS-FNGS----IPESL  486 (623)
T ss_pred             EEEEECCCCCcccc----CCHHHhCCCCCCEEECCCCcccC----cCChHHhCCCCCCEEECCCCC-CCCC----CchHH
Confidence            66777777777654    56666677777777777777764    445556667777777777776 3332    34455


Q ss_pred             ccCCccceeecCCCCCChHHHHHHHHHhhcCCccEEEccCCC
Q 000742          999 DTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTN 1040 (1313)
Q Consensus       999 ~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~ 1040 (1313)
                      ..+++|+.|+|++|.+++..+..+....  .++..+++.+|.
T Consensus       487 ~~L~~L~~L~Ls~N~l~g~iP~~l~~~~--~~~~~l~~~~N~  526 (623)
T PLN03150        487 GQLTSLRILNLNGNSLSGRVPAALGGRL--LHRASFNFTDNA  526 (623)
T ss_pred             hcCCCCCEEECcCCcccccCChHHhhcc--ccCceEEecCCc
Confidence            6677777777777777666665554321  234556666553

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.80  E-value=5.2e-05  Score=63.79  Aligned_cols=62  Identities=13%  Similarity=0.147  Sum_probs=55.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742          170 NNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK  240 (1313)
Q Consensus       170 ~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~  240 (1313)
                      +.+|..++..|++++|+..|+++++.         .|....+++.+|.++..+|++++|+.+|+++++..|
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~---------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P   62 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQ---------DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP   62 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCC---------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHH---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            35789999999999999999999987         455789999999999999999999999999998866

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.80  E-value=0.00035  Score=64.09  Aligned_cols=104  Identities=13%  Similarity=0.134  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhh
Q 000742          168 AHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQG  247 (1313)
Q Consensus       168 ~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~  247 (1313)
                      .+-.-|.+....|+.+.|++.|.+++.++++         .+.+|.|.+.+|..+|+.++|+..+++|+++.-..  ...
T Consensus        45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~---------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~--trt  113 (175)
T KOG4555|consen   45 ELELKAIALAEAGDLDGALELFGQALCLAPE---------RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ--TRT  113 (175)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhccc---------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc--chH
Confidence            3444566677789999999999999999766         68899999999999999999999999999996522  234


Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc
Q 000742          248 EAKGYINLGELHYRVQKYDEAILCYQKALNLAQSM  282 (1313)
Q Consensus       248 ~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~  282 (1313)
                      .-.++...|.+|..+|+-+.|..-|+.|-++...+
T Consensus       114 acqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~F  148 (175)
T KOG4555|consen  114 ACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKF  148 (175)
T ss_pred             HHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHH
Confidence            56789999999999999999999999998876543

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.79  E-value=0.0018  Score=66.99  Aligned_cols=244  Identities=13%  Similarity=0.073  Sum_probs=161.6

Q ss_pred             hhhHHHHHHHHHHHHHhcCcHHH--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHcc
Q 000742            5 EMQMSEAKRAYRSAKEEGNRQEE--ARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLE   82 (1313)
Q Consensus         5 ~~~~~~A~~~l~~a~~~~~~~~~--a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g   82 (1313)
                      ....++|+..|+++++..+...+  ..++.++-.+++..|+|++-...|++.+......-....--...+.+-..-....
T Consensus        40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~  119 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK  119 (440)
T ss_pred             ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence            34788999999999988655332  3568889999999999999999999998877654332222222333222222334


Q ss_pred             ChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhh
Q 000742           83 HFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFL  162 (1313)
Q Consensus        83 ~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~  162 (1313)
                      +.+--.++| +..++..++..+.......-..+|.+|...        ++|.+-.+.+++.-.-++.-.......   -.
T Consensus       120 ~m~LLQ~FY-eTTL~ALkdAKNeRLWFKTNtKLgkl~fd~--------~e~~kl~KIlkqLh~SCq~edGedD~k---KG  187 (440)
T KOG1464|consen  120 NMDLLQEFY-ETTLDALKDAKNERLWFKTNTKLGKLYFDR--------GEYTKLQKILKQLHQSCQTEDGEDDQK---KG  187 (440)
T ss_pred             hhHHHHHHH-HHHHHHHHhhhcceeeeeccchHhhhheeH--------HHHHHHHHHHHHHHHHhccccCchhhh---cc
Confidence            444445566 776766665544433334446789999877        788777777666655554322221111   12


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000742          163 KEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKI  242 (1313)
Q Consensus       163 p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~  242 (1313)
                      ....++|..--.+|..+.+-.+-...|++|+.+-..+   ..+.....+...=|..+.+.|+|++|-..|-+|.+-+...
T Consensus       188 tQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAI---PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEs  264 (440)
T KOG1464|consen  188 TQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAI---PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDES  264 (440)
T ss_pred             chhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccC---CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccccc
Confidence            3567788888889999999888889999999886553   2233344445555778899999999999999998877665


Q ss_pred             chhh-hHHHHHHHHHHHHHHhc
Q 000742          243 EHCQ-GEAKGYINLGELHYRVQ  263 (1313)
Q Consensus       243 ~~~~-~~~~~~~~la~~~~~~g  263 (1313)
                      +.+. ....-|.-+|..+.+.|
T Consensus       265 GspRRttCLKYLVLANMLmkS~  286 (440)
T KOG1464|consen  265 GSPRRTTCLKYLVLANMLMKSG  286 (440)
T ss_pred             CCcchhHHHHHHHHHHHHHHcC
Confidence            5432 23344666777776654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.77  E-value=7e-05  Score=92.93  Aligned_cols=149  Identities=21%  Similarity=0.259  Sum_probs=105.5

Q ss_pred             CCcCEEEecCCC-CCHHHHHHHHHHHHhcccCccceEEEccCCCCCHHHHHHHHhcccCCCCcCEEEecCCCCChhHHHH
Q 000742          858 KTVALLDLSHNL-LGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSY  936 (1313)
Q Consensus       858 ~~L~~L~Ls~n~-l~~~~~~~L~~~l~~~~~~~~l~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~  936 (1313)
                      .+|++||+++.. +.......++..      .|+|++|.+++=.+.......+|.   .+++|..||+|+.++++.    
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~------LPsL~sL~i~~~~~~~~dF~~lc~---sFpNL~sLDIS~TnI~nl----  188 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTM------LPSLRSLVISGRQFDNDDFSQLCA---SFPNLRSLDISGTNISNL----  188 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhh------CcccceEEecCceecchhHHHHhh---ccCccceeecCCCCccCc----
Confidence            478899998876 555556666664      567888888887775555555554   478999999999988874    


Q ss_pred             HHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChh-hHHHHHHhhccCCccceeecCCCCCC
Q 000742          937 LSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGN-AITNLLVKLDTLKSFSELNLNGLKLS 1015 (1313)
Q Consensus       937 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~-~~~~~~~~l~~~~~L~~L~Ls~n~l~ 1015 (1313)
                        ..++.+++|++|.+.+=.|..  ...+- .|..+++|+.||+|........ .+......-..+|.|+.||.|++.+.
T Consensus       189 --~GIS~LknLq~L~mrnLe~e~--~~~l~-~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  189 --SGISRLKNLQVLSMRNLEFES--YQDLI-DLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             --HHHhccccHHHHhccCCCCCc--hhhHH-HHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence              567788889988888766654  11222 2456889999999988744444 23444555566889999999988888


Q ss_pred             hHHHHHHHH
Q 000742         1016 KPVVDRLCQ 1024 (1313)
Q Consensus      1016 ~~~~~~l~~ 1024 (1313)
                      ....+.+..
T Consensus       264 ~~~le~ll~  272 (699)
T KOG3665|consen  264 EEILEELLN  272 (699)
T ss_pred             HHHHHHHHH
Confidence            776665543

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.76  E-value=0.035  Score=58.35  Aligned_cols=227  Identities=14%  Similarity=0.076  Sum_probs=159.8

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHH----HHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHH
Q 000742           33 VIGDILKNRGEYVEALKWFRIDYDV----SVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQ  108 (1313)
Q Consensus        33 ~lg~~y~~~g~~~eAl~~~~~al~~----~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~  108 (1313)
                      .+|+-....+++++|+..|.+.+..    ..+..  ...-.+...++.+|...|++..--+.. ...-+...+...+.  
T Consensus         8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~--nEqE~tvlel~~lyv~~g~~~~l~~~i-~~sre~m~~ftk~k--   82 (421)
T COG5159           8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL--NEQEATVLELFKLYVSKGDYCSLGDTI-TSSREAMEDFTKPK--   82 (421)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh--hHHHHHHHHHHHHHHhcCCcchHHHHH-HhhHHHHHHhcchh--
Confidence            4566777889999999999988765    22211  123456789999999999998766666 55555544443221  


Q ss_pred             HHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000742          109 QRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKF  188 (1313)
Q Consensus       109 a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~  188 (1313)
                            ...+...++++.......++.-++.....++++.+-....         -....-..+...+++.|+|.+|+..
T Consensus        83 ------~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~f---------Lr~~Le~Kli~l~y~~~~Ysdalal  147 (421)
T COG5159          83 ------ITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKF---------LRLELECKLIYLLYKTGKYSDALAL  147 (421)
T ss_pred             ------HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHhcccHHHHHHH
Confidence                  2222222333344455778888888888888876543211         2234456778899999999999999


Q ss_pred             HHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchh-hhHHHHHHHHHHHHHHhcCHHH
Q 000742          189 LIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHC-QGEAKGYINLGELHYRVQKYDE  267 (1313)
Q Consensus       189 ~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~  267 (1313)
                      ....+.-.++.   ++.+....++..-..+|....+..++...+..|-..+...--+ ...+..-..-|..+..-.+|.-
T Consensus       148 In~ll~ElKk~---DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dykt  224 (421)
T COG5159         148 INPLLHELKKY---DDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKT  224 (421)
T ss_pred             HHHHHHHHHhh---cCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchh
Confidence            99998888886   7788888889999999999999999998888777665433222 2334444445777888899999


Q ss_pred             HHHHHHHHHHHHHHc
Q 000742          268 AILCYQKALNLAQSM  282 (1313)
Q Consensus       268 A~~~~~kal~~~~~~  282 (1313)
                      |..||-+|++-+...
T Consensus       225 A~SYF~Ea~Egft~l  239 (421)
T COG5159         225 ASSYFIEALEGFTLL  239 (421)
T ss_pred             HHHHHHHHHhccccc
Confidence            999999999866543

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.71  E-value=8.6e-05  Score=78.98  Aligned_cols=99  Identities=17%  Similarity=0.132  Sum_probs=89.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHH
Q 000742          170 NNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEA  249 (1313)
Q Consensus       170 ~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~  249 (1313)
                      -..|..|+.+|+|++|++.|.+++...+         ..+..+.+.|.+|++++.|..|...+..|+.+..      .+.
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P---------~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~------~Y~  165 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAVYP---------HNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK------LYV  165 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhccCC---------CCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH------HHH
Confidence            4467889999999999999999999844         3466889999999999999999999999999987      788


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcc
Q 000742          250 KGYINLGELHYRVQKYDEAILCYQKALNLAQSME  283 (1313)
Q Consensus       250 ~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~  283 (1313)
                      .+|...|.+-..+|...+|.+.++.++++.|...
T Consensus       166 KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~  199 (536)
T KOG4648|consen  166 KAYSRRMQARESLGNNMEAKKDCETVLALEPKNI  199 (536)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccH
Confidence            9999999999999999999999999999988643

>PLN03150 hypothetical protein; Provisional

Probab=97.69  E-value=4.7e-05  Score=95.09  Aligned_cols=106  Identities=22%  Similarity=0.250  Sum_probs=68.2

Q ss_pred             ceEEEccCCCCCHHHHHHHHhcccCCCCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHh
Q 000742          891 DLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALG  970 (1313)
Q Consensus       891 l~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~  970 (1313)
                      +..|+|++|.+....+..++.+    ++|+.|+|++|.|.+.    ++..+..+++|+.|+|++|.+++    .++..+.
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L----~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~LdLs~N~lsg----~iP~~l~  487 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKL----RHLQSINLSGNSIRGN----IPPSLGSITSLEVLDLSYNSFNG----SIPESLG  487 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCC----CCCCEEECCCCcccCc----CChHHhCCCCCCEEECCCCCCCC----CCchHHh
Confidence            4567777777765555555553    7777777777777654    66667777777777777777775    4455566


Q ss_pred             cCCCccEEEeCCCCCCChhhHHHHHHhhcc-CCccceeecCCCC
Q 000742          971 AESTLAQLCIGYNSPVTGNAITNLLVKLDT-LKSFSELNLNGLK 1013 (1313)
Q Consensus       971 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~-~~~L~~L~Ls~n~ 1013 (1313)
                      .+++|++|+|++|. +++.    ++..+.. ..++..+++.+|.
T Consensus       488 ~L~~L~~L~Ls~N~-l~g~----iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        488 QLTSLRILNLNGNS-LSGR----VPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             cCCCCCEEECcCCc-cccc----CChHHhhccccCceEEecCCc
Confidence            77777777777777 3333    2222222 2355667777665

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.68  E-value=0.00018  Score=76.39  Aligned_cols=106  Identities=11%  Similarity=0.049  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhH
Q 000742          169 HNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGE  248 (1313)
Q Consensus       169 ~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~  248 (1313)
                      .++.|.-++..|+|..|...|..-++-++.      ......+++.||.+++.+|+|+.|...|..+++-.+   +.+..
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~------s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P---~s~KA  214 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPN------STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYP---KSPKA  214 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCC---CCCCC
Confidence            788899999999999999999999998776      566788999999999999999999999999888655   45667


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcc
Q 000742          249 AKGYINLGELHYRVQKYDEAILCYQKALNLAQSME  283 (1313)
Q Consensus       249 ~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~  283 (1313)
                      +.+++.+|.+..++|+.++|...|++.++-+|...
T Consensus       215 pdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~  249 (262)
T COG1729         215 PDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD  249 (262)
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence            78999999999999999999999999999887643

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=97.68  E-value=2.1e-05  Score=87.81  Aligned_cols=321  Identities=18%  Similarity=0.053  Sum_probs=196.8

Q ss_pred             HHHHHHhhccCCCeEEecCCCCCcCCHHHHHHHh--hcCCCcCEEEecCCCCCHHHHHHHHHHHHhcccCccceEEEccC
Q 000742          821 KLLKKLYISEVEDEVIVSECELQDISVTPLLNAL--HTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHC  898 (1313)
Q Consensus       821 ~~l~~l~~~~~~~~l~l~~~~l~~~~~~~l~~~L--~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~~~~l~~L~Ls~  898 (1313)
                      .++...........+.|.-|.+.......+....  ..++.++++||+.|.+.+...-.|..-         ..-|+|..
T Consensus       126 sil~v~~~s~~l~~l~l~~cml~pdf~~kl~hs~~~rpnpr~r~~dls~npi~dkvpihl~~p---------~~pl~lr~  196 (553)
T KOG4242|consen  126 SILGVPSPSAPLPPLGLLPCMLLPDFGQKLRHSTRARPNPRARQHDLSPNPIGDKVPIHLPQP---------GNPLSLRV  196 (553)
T ss_pred             hhhccccccccCCccCchhccCchhhcccccchhhcCCcchhhhhccCCCcccccCCccccCC---------CCccchhh
Confidence            3343333334456678888888777666555554  444578999999999999776655541         12267888


Q ss_pred             CCCCHHHHHHHHhcccCCCCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHH-HHHHHHHHhcCCCccE
Q 000742          899 NRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRT-IQKVADALGAESTLAQ  977 (1313)
Q Consensus       899 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~-~~~l~~~l~~~~~L~~  977 (1313)
                      |.++...+..++.- .--..+++++|+.|...+.--. +.........++.++.+...+.-+- +..++  ...-+.|++
T Consensus       197 c~lsskfis~l~~q-sg~~~lteldls~n~~Kddip~-~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~--~g~~tkl~~  272 (553)
T KOG4242|consen  197 CELSSKFISKLLIQ-SGRLWLTELDLSTNGGKDDIPR-TLNKKAGTLVLFKLDRSTTGIRLDLLTSPLA--AGRTTKLTF  272 (553)
T ss_pred             hhhhhhHHHHhhhh-hccccccccccccCCCCccchh-HHHHhhhhhhhhcccccccccchhhcccccc--cccccccch
Confidence            88877776555421 1124689999999988776111 2222233346888888887775321 11211  233468999


Q ss_pred             EEeCCCCCCChhhHHHHH----HhhccCCccceeecCCCCCChHHHHHHHH-HhhcCC--ccEEEccCCCCCCchHHHHH
Q 000742          978 LCIGYNSPVTGNAITNLL----VKLDTLKSFSELNLNGLKLSKPVVDRLCQ-LAKTSC--LTHLMLGCTNLGSDGSLQLV 1050 (1313)
Q Consensus       978 L~Ls~n~l~~~~~~~~~~----~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~-l~~~~~--L~~L~Ls~n~i~~~~~~~l~ 1050 (1313)
                      .+++.|. .......+..    ..++.-+++ +|++..+....+.+..+.- +..+..  =-.+++..|...+..+  + 
T Consensus       273 ~kls~ng-~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~v--l-  347 (553)
T KOG4242|consen  273 GKLSRNG-TSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEV--L-  347 (553)
T ss_pred             hhhccCC-CCcccccccccccccccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccch--h-
Confidence            9999988 4333233222    334445577 8888888877766555432 222222  2356777766654322  1 


Q ss_pred             HHHhcCCCcccEEEccCCCCChhHHHHHHHHHhcCCCccEEEccCCC---CChHHHHH-HHHHhcCCCCceeEEEeecCC
Q 000742         1051 ESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNP---IMKEGANA-LASLLMNPQCCLKVLVLSKCQ 1126 (1313)
Q Consensus      1051 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~---i~~~~~~~-l~~~l~~~~~~L~~L~Ls~n~ 1126 (1313)
                      ++-... ..+++|.++.|++.+.+....  .+...++++.+++..-.   +.+.+..+ ......+...-+..+.++.|.
T Consensus       348 eaci~g-~R~q~l~~rdnnldgeg~~vg--k~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~  424 (553)
T KOG4242|consen  348 EACIFG-QRVQVLLQRDNNLDGEGGAVG--KRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGP  424 (553)
T ss_pred             hccccc-eeeeEeecccccccccccccc--ceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCc
Confidence            221112 468999999999888765444  46677888888887643   22222221 111122223348889999998


Q ss_pred             CCHHHHHHHHHHhhcCCCccEEEccCCCCChhhhhhh
Q 000742         1127 LGLAGVLQLIKALSENDTLEELNLADNASKELTLQQN 1163 (1313)
Q Consensus      1127 i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~~ 1163 (1313)
                      ++ .+.......+...+.+..|++++|..++.+-..+
T Consensus       425 lk-a~l~s~in~l~stqtl~kldisgn~mgd~gap~l  460 (553)
T KOG4242|consen  425 LK-AGLESAINKLLSTQTLAKLDISGNGMGDGGAPPL  460 (553)
T ss_pred             cc-ccHHHHHHhhccCcccccccccCCCcccCCCCcC
Confidence            87 5566677778888899999999998888755544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.67  E-value=3.1e-06  Score=70.11  Aligned_cols=60  Identities=22%  Similarity=0.192  Sum_probs=36.3

Q ss_pred             cccccccCCccchhhhccccCCCCcccccccCCccchhhHHHHHHHHhccccCceecCCCCCC
Q 000742         1202 DLEVADSEDDKIRVESAASGFDNSCTSSCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGF 1264 (1313)
Q Consensus      1202 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~l~~~l~~~~~L~~LdLs~N~l 1264 (1313)
                      +|+.|++++|.|+.+++.   .+...++|++|+|++|++...-+.+|..+++|++|+|++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~---~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPD---SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTT---TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHH---HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            445555555555544332   233334555555555555544455788889999999999875

...

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.67  E-value=0.12  Score=60.70  Aligned_cols=104  Identities=17%  Similarity=0.163  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-----HhhCCCCCchhHHHHHHHHHHHccChHHHHHHH------------
Q 000742           29 RWANVIGDILKNRGEYVEALKWFRIDYDVS-----VKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQ------------   91 (1313)
Q Consensus        29 ~~~~~lg~~y~~~g~~~eAl~~~~~al~~~-----~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~------------   91 (1313)
                      +.|..+|......-.++-|...|-+.-...     +..   ..+..--...|.+-..-|+|++|.+.|            
T Consensus       693 rLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl---~~i~s~~~q~aei~~~~g~feeaek~yld~drrDLAiel  769 (1189)
T KOG2041|consen  693 RLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRL---RTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDLAIEL  769 (1189)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHh---hhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhhhHHH
Confidence            447778888877777777777776542221     000   000011124455555668888887776            


Q ss_pred             ------HHHHHHHHHH---hcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHH
Q 000742           92 ------VKKHLELAKD---ASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSA  143 (1313)
Q Consensus        92 ------~~kal~l~~~---~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~A  143 (1313)
                            |-+.+++.+.   ..+......++.++|..+..+        ..+++|.+||.+.
T Consensus       770 r~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~--------~~We~A~~yY~~~  822 (1189)
T KOG2041|consen  770 RKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEM--------MEWEEAAKYYSYC  822 (1189)
T ss_pred             HHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhc
Confidence                  1122222222   223334445566666666655        6666666666554

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.67  E-value=0.002  Score=66.72  Aligned_cols=225  Identities=16%  Similarity=0.145  Sum_probs=152.8

Q ss_pred             hCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 000742           41 RGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYY  120 (1313)
Q Consensus        41 ~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~  120 (1313)
                      ..+.++|+.-|++++++-......  -..++-.+..+++++|+|++-+.+| ++.+...+..-.....-.+.+.+-..-.
T Consensus        40 e~~p~~Al~sF~kVlelEgEKgeW--GFKALKQmiKI~f~l~~~~eMm~~Y-~qlLTYIkSAVTrNySEKsIN~IlDyiS  116 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELEGEKGEW--GFKALKQMIKINFRLGNYKEMMERY-KQLLTYIKSAVTRNYSEKSINSILDYIS  116 (440)
T ss_pred             ccCHHHHHHHHHHHHhcccccchh--HHHHHHHHHHHHhccccHHHHHHHH-HHHHHHHHHHHhccccHHHHHHHHHHHh
Confidence            358999999999999987433222  2578888999999999999999999 9988776543211111111222211111


Q ss_pred             HHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhc
Q 000742          121 EMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEE  200 (1313)
Q Consensus       121 ~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~  200 (1313)
                      ..        .+.+--.++|+..++..+...+..         .+......+|.+|+..++|.+-.+.+.+.-.-++.. 
T Consensus       117 tS--------~~m~LLQ~FYeTTL~ALkdAKNeR---------LWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e-  178 (440)
T KOG1464|consen  117 TS--------KNMDLLQEFYETTLDALKDAKNER---------LWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE-  178 (440)
T ss_pred             hh--------hhhHHHHHHHHHHHHHHHhhhcce---------eeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc-
Confidence            11        445555566666666555443332         345566789999999999988888877766665542 


Q ss_pred             cCCCc----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 000742          201 VSEDD----DGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKAL  276 (1313)
Q Consensus       201 ~~~~~----~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal  276 (1313)
                      .+.++    .....+|..--.+|..+++-.+-...|++|+.+-..+..+.-...+..-=|..+.+.|+|++|-.-|=+|.
T Consensus       179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF  258 (440)
T KOG1464|consen  179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF  258 (440)
T ss_pred             cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence            22222    22345555566788888888888999999999877666555455555556788999999999999888888


Q ss_pred             HHHHHccChh
Q 000742          277 NLAQSMEDED  286 (1313)
Q Consensus       277 ~~~~~~~~~~  286 (1313)
                      +-..+.+.+.
T Consensus       259 KNYDEsGspR  268 (440)
T KOG1464|consen  259 KNYDESGSPR  268 (440)
T ss_pred             hcccccCCcc
Confidence            8777666554

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.66  E-value=0.0046  Score=76.17  Aligned_cols=292  Identities=20%  Similarity=0.165  Sum_probs=183.0

Q ss_pred             CHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHc-----cChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 000742           43 EYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRL-----EHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGR  117 (1313)
Q Consensus        43 ~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~-----g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~  117 (1313)
                      +..+|.++|+.+-+..        ...+.+.+|.+|..-     .|.+.|+.++ +.+.+-...... .....+.+.+|.
T Consensus       227 ~~~~a~~~~~~~a~~g--------~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l-~~aa~~~~~~a~-~~~~~a~~~lg~  296 (552)
T KOG1550|consen  227 ELSEAFKYYREAAKLG--------HSEAQYALGICYLAGTYGVTQDLESAIEYL-KLAAESFKKAAT-KGLPPAQYGLGR  296 (552)
T ss_pred             hhhHHHHHHHHHHhhc--------chHHHHHHHHHHhhccccccccHHHHHHHH-HHHHHHHHHHHh-hcCCccccHHHH
Confidence            3567888888775543        267778888888764     6899999999 988873111100 002246789999


Q ss_pred             HHHHHhccCCcchh-hHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHH
Q 000742          118 TYYEMFLRSDDDHY-SIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELD---NLEEAKKFLIRGL  193 (1313)
Q Consensus       118 ~y~~l~~~~~~~~~-~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g---~~~~A~~~~~~al  193 (1313)
                      +|..-.    .... +++.|..+|.+|.+.                 ..+.+.+.+|.+|....   ++..|.++|..|.
T Consensus       297 ~Y~~g~----~~~~~d~~~A~~~~~~aA~~-----------------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa  355 (552)
T KOG1550|consen  297 LYLQGL----GVEKIDYEKALKLYTKAAEL-----------------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAA  355 (552)
T ss_pred             HHhcCC----CCccccHHHHHHHHHHHHhc-----------------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHH
Confidence            998631    0112 788899999988877                 44678889999888765   5789999999987


Q ss_pred             hHhhhhccCCCchHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh-cCHHHH
Q 000742          194 EICNEEEVSEDDDGRSRLHHNLGNVYMEL----RMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRV-QKYDEA  268 (1313)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~lg~~y~~~----g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A  268 (1313)
                      ..       +    ...+.+.+|.+|..-    .+...|..+|+++.+.        ..+.+.+.++.++..- +.+..+
T Consensus       356 ~~-------G----~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~--------g~~~A~~~~~~~~~~g~~~~~~~  416 (552)
T KOG1550|consen  356 KA-------G----HILAIYRLALCYELGLGVERNLELAFAYYKKAAEK--------GNPSAAYLLGAFYEYGVGRYDTA  416 (552)
T ss_pred             Hc-------C----ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc--------cChhhHHHHHHHHHHccccccHH
Confidence            65       2    345778888888763    5889999999999887        3455556666655433 677776


Q ss_pred             HHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHH
Q 000742          269 ILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIE  348 (1313)
Q Consensus       269 ~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~  348 (1313)
                      .-.+....+..-+......  + .......                        .......                   
T Consensus       417 ~~~~~~~a~~g~~~~q~~a--~-~l~~~~~------------------------~~~~~~~-------------------  450 (552)
T KOG1550|consen  417 LALYLYLAELGYEVAQSNA--A-YLLDQSE------------------------EDLFSRG-------------------  450 (552)
T ss_pred             HHHHHHHHHhhhhHHhhHH--H-HHHHhcc------------------------ccccccc-------------------
Confidence            6666555544322211100  0 0000000                        0000000                   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHh----hCHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Q 000742          349 KSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKL----RKFNKAIKWYTKSWEMYKSIGNLEGQALAKV  424 (1313)
Q Consensus       349 ~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~----g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~  424 (1313)
                         .......+..++.++.        ....+.+...+|.+|+.-    .+++.|..+|.+|...        . +.+.+
T Consensus       451 ---~~~~~~~~~~~~~~a~--------~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~--------~-~~~~~  510 (552)
T KOG1550|consen  451 ---VISTLERAFSLYSRAA--------AQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ--------G-AQALF  510 (552)
T ss_pred             ---cccchhHHHHHHHHHH--------hccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHh--------h-hHHHh
Confidence               0000111111222221        123346777788888665    4699999999998853        2 67799


Q ss_pred             HHHHHHHHc---CCHHHHHHHHHHHHHHH
Q 000742          425 NMGNVLDSN---GDWAGALDAFQEGYRIA  450 (1313)
Q Consensus       425 ~lg~~y~~~---g~~~~A~~~~~kAl~i~  450 (1313)
                      ++|.+|..-   .....|..+|.+|.+..
T Consensus       511 nlg~~~e~g~g~~~~~~a~~~~~~~~~~~  539 (552)
T KOG1550|consen  511 NLGYMHEHGEGIKVLHLAKRYYDQASEED  539 (552)
T ss_pred             hhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence            999999852   23789999999887753

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.63  E-value=0.0004  Score=79.16  Aligned_cols=74  Identities=12%  Similarity=0.023  Sum_probs=64.5

Q ss_pred             chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000742          159 SSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIII  238 (1313)
Q Consensus       159 ~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~  238 (1313)
                      +...|..+.+++++|.+|+..|+|++|+..|++|+++.+.      ......+|+++|.+|..+|++++|++++++|+++
T Consensus        68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd------~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN------PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3457889999999999999999999999999999999443      2222357999999999999999999999999997

>PRK15331 chaperone protein SicA; Provisional

Probab=97.62  E-value=0.0012  Score=64.78  Aligned_cols=120  Identities=17%  Similarity=0.061  Sum_probs=94.5

Q ss_pred             hhHHHHHHHHHHHHHhc--------CcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHH
Q 000742            6 MQMSEAKRAYRSAKEEG--------NRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEV   77 (1313)
Q Consensus         6 ~~~~~A~~~l~~a~~~~--------~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~   77 (1313)
                      .+.++-...+..++..+        -........+..|.-+++.|++++|...|+-..-..      +...+.+..+|.+
T Consensus         7 ~~~~~~~~~i~~al~~G~tlk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d------~~n~~Y~~GLaa~   80 (165)
T PRK15331          7 VSEERVAEMIWDAVSEGATLKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYD------FYNPDYTMGLAAV   80 (165)
T ss_pred             hhHHHHHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------cCcHHHHHHHHHH
Confidence            34455555556665532        234455668899999999999999999998765543      2336788999999


Q ss_pred             HHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHH
Q 000742           78 YLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKL  146 (1313)
Q Consensus        78 y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l  146 (1313)
                      +..+++|++|+..| -.|..+.++.+.      ..+..|.+|..+        ++.+.|...|..++..
T Consensus        81 ~Q~~k~y~~Ai~~Y-~~A~~l~~~dp~------p~f~agqC~l~l--------~~~~~A~~~f~~a~~~  134 (165)
T PRK15331         81 CQLKKQFQKACDLY-AVAFTLLKNDYR------PVFFTGQCQLLM--------RKAAKARQCFELVNER  134 (165)
T ss_pred             HHHHHHHHHHHHHH-HHHHHcccCCCC------ccchHHHHHHHh--------CCHHHHHHHHHHHHhC
Confidence            99999999999999 888888766554      368999999999        9999999999999873

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.60  E-value=0.00035  Score=74.20  Aligned_cols=103  Identities=16%  Similarity=0.069  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 000742           31 ANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQR  110 (1313)
Q Consensus        31 ~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~  110 (1313)
                      +|..|.-++..|+|.+|...|..-++.++.   ......++++||++++.+|+|++|...| ..+.+-+|+.+-.   ..
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~---s~~~~nA~yWLGe~~y~qg~y~~Aa~~f-~~~~k~~P~s~KA---pd  216 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPN---STYTPNAYYWLGESLYAQGDYEDAAYIF-ARVVKDYPKSPKA---PD  216 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CcccchhHHHHHHHHHhcccchHHHHHH-HHHHHhCCCCCCC---hH
Confidence            678899999999999999999998888753   3556899999999999999999999999 8888877666543   37


Q ss_pred             HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHH
Q 000742          111 ACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQ  148 (1313)
Q Consensus       111 a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~  148 (1313)
                      +++.+|.+...+        ++.++|...|+++++-+.
T Consensus       217 allKlg~~~~~l--------~~~d~A~atl~qv~k~YP  246 (262)
T COG1729         217 ALLKLGVSLGRL--------GNTDEACATLQQVIKRYP  246 (262)
T ss_pred             HHHHHHHHHHHh--------cCHHHHHHHHHHHHHHCC
Confidence            899999999988        999999999999987744

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.58  E-value=2.5e-05  Score=72.60  Aligned_cols=110  Identities=18%  Similarity=0.226  Sum_probs=67.1

Q ss_pred             ccceeecCCCCCChHHHHHHHHHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHHHHHHHHH
Q 000742         1003 SFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASV 1082 (1313)
Q Consensus      1003 ~L~~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 1082 (1313)
                      .+..++|+.|.+.. ..+.+..+.....|+..+|++|.+.+     +++.+....+.+++|+|++|.|++.     +..+
T Consensus        28 E~h~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~fk~-----fp~kft~kf~t~t~lNl~~neisdv-----PeE~   96 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGFKK-----FPKKFTIKFPTATTLNLANNEISDV-----PEEL   96 (177)
T ss_pred             HhhhcccccchhhH-HHHHHHHHhCCceEEEEecccchhhh-----CCHHHhhccchhhhhhcchhhhhhc-----hHHH
Confidence            45556666666532 23444555555667777777776643     3333333334677778888777765     4445


Q ss_pred             hcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCH
Q 000742         1083 SLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGL 1129 (1313)
Q Consensus      1083 ~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~ 1129 (1313)
                      ..++.|+.|++++|++.. -+..++.+.     ++-.|+..+|.+-.
T Consensus        97 Aam~aLr~lNl~~N~l~~-~p~vi~~L~-----~l~~Lds~~na~~e  137 (177)
T KOG4579|consen   97 AAMPALRSLNLRFNPLNA-EPRVIAPLI-----KLDMLDSPENARAE  137 (177)
T ss_pred             hhhHHhhhcccccCcccc-chHHHHHHH-----hHHHhcCCCCcccc
Confidence            677778888888888763 344555533     26677777776543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.57  E-value=0.00057  Score=73.52  Aligned_cols=110  Identities=15%  Similarity=0.170  Sum_probs=94.2

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHH
Q 000742          162 LKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELR---MWDKSREHIEQDIII  238 (1313)
Q Consensus       162 ~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g---~~~~A~~~~~kal~~  238 (1313)
                      +|..++-|..||.+|..+|++..|...|.+|+++.++         ....+..+|.+++...   ...+|...+++++..
T Consensus       152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~---------n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~  222 (287)
T COG4235         152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD---------NPEILLGLAEALYYQAGQQMTAKARALLRQALAL  222 (287)
T ss_pred             CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence            3466889999999999999999999999999999544         4567777787776653   467999999999999


Q ss_pred             HHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChh
Q 000742          239 CKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDED  286 (1313)
Q Consensus       239 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~  286 (1313)
                      .+      ....+.+.||..++..|+|.+|+..+++.++..|......
T Consensus       223 D~------~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr  264 (287)
T COG4235         223 DP------ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR  264 (287)
T ss_pred             CC------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence            76      8899999999999999999999999999999987655543

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.57  E-value=0.00049  Score=79.24  Aligned_cols=111  Identities=12%  Similarity=0.153  Sum_probs=89.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHH
Q 000742          131 YSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSR  210 (1313)
Q Consensus       131 ~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  210 (1313)
                      ++++.|+..+++..+.       .           +++...+|.++...++..+|++.+.++++..+         ..+.
T Consensus       183 ~~~~~ai~lle~L~~~-------~-----------pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p---------~d~~  235 (395)
T PF09295_consen  183 QRYDEAIELLEKLRER-------D-----------PEVAVLLARVYLLMNEEVEAIRLLNEALKENP---------QDSE  235 (395)
T ss_pred             ccHHHHHHHHHHHHhc-------C-----------CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC---------CCHH
Confidence            5666666666664433       1           23566789999899999999999999986633         2377


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 000742          211 LHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQK  274 (1313)
Q Consensus       211 ~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~k  274 (1313)
                      .+...|..+...++++.|++..++|+.+.|      ....+|+.||.+|...|++++|+..++.
T Consensus       236 LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP------~~f~~W~~La~~Yi~~~d~e~ALlaLNs  293 (395)
T PF09295_consen  236 LLNLQAEFLLSKKKYELALEIAKKAVELSP------SEFETWYQLAECYIQLGDFENALLALNS  293 (395)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCc------hhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence            888889999999999999999999999977      8889999999999999999999877663

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.57  E-value=5.8e-05  Score=80.26  Aligned_cols=102  Identities=13%  Similarity=0.094  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHH
Q 000742          212 HHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQ  291 (1313)
Q Consensus       212 ~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~  291 (1313)
                      .-..|+-|+.+|+|++|+.+|.+++...+      ..+..+.+.|.+|++++.|..|...++.|+.+.......+...+.
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P------~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~  173 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYP------HNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQ  173 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCC------CCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence            35678999999999999999999999876      788899999999999999999999999999999887776666666


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742          292 IDQNIETVKKAIEVMDELKKEEQNLKKL  319 (1313)
Q Consensus       292 ~~~~lg~~~~a~~~~~~a~~~~~~~~~l  319 (1313)
                      +-..+|...+|.+.++.++...+....+
T Consensus       174 AR~~Lg~~~EAKkD~E~vL~LEP~~~EL  201 (536)
T KOG4648|consen  174 ARESLGNNMEAKKDCETVLALEPKNIEL  201 (536)
T ss_pred             HHHHHhhHHHHHHhHHHHHhhCcccHHH
Confidence            7777777777777777776555544333

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.57  E-value=0.00066  Score=65.16  Aligned_cols=108  Identities=12%  Similarity=0.033  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchh
Q 000742          166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHC  245 (1313)
Q Consensus       166 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~  245 (1313)
                      +..++.-|...++.|+|++|++.|+....-++.      .+....+...+|.+|+..+++++|+..+++-+++.|.   +
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~------g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~---h   80 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPF------GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT---H   80 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---C
Confidence            567788888889999999999999999887665      4556678899999999999999999999999999874   4


Q ss_pred             hhHHHHHHHHHHHHHHhcC---------------HHHHHHHHHHHHHHHHHc
Q 000742          246 QGEAKGYINLGELHYRVQK---------------YDEAILCYQKALNLAQSM  282 (1313)
Q Consensus       246 ~~~~~~~~~la~~~~~~g~---------------~~~A~~~~~kal~~~~~~  282 (1313)
                      +....+++..|.+++.+..               ..+|...|++.+...|..
T Consensus        81 p~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S  132 (142)
T PF13512_consen   81 PNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS  132 (142)
T ss_pred             CCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence            5677889999999988776               667777777777666654

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.56  E-value=0.039  Score=61.83  Aligned_cols=142  Identities=15%  Similarity=0.195  Sum_probs=96.8

Q ss_pred             chhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhHhhh---hc--cC
Q 000742          129 DHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELD-NLEEAKKFLIRGLEICNE---EE--VS  202 (1313)
Q Consensus       129 ~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g-~~~~A~~~~~~al~~~~~---~~--~~  202 (1313)
                      ..|+++.|..++.|+-.+.. ..++      ......+..++++|......+ ++++|..++++|.+++..   ..  ..
T Consensus         5 ~~~~~~~A~~~~~K~~~~~~-~~~~------~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~   77 (278)
T PF08631_consen    5 KQGDLDLAEHMYSKAKDLLN-SLDP------DMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSP   77 (278)
T ss_pred             hhCCHHHHHHHHHHhhhHHh-cCCc------HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCC
Confidence            34999999999999988764 1111      234578999999999999999 999999999999999744   11  11


Q ss_pred             CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 000742          203 EDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQ  280 (1313)
Q Consensus       203 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~  280 (1313)
                      +.......++..++.+|...+.++...+ ..+++.....  ..+..+..+...-.+..+.++.+.+.+.+.+++.-..
T Consensus        78 ~~~elr~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~--e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen   78 DGSELRLSILRLLANAYLEWDTYESVEK-ALNALRLLES--EYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             cHHHHHHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHH--hCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            2235678889999999999998764443 2233333321  1222233332222333347888888888888887654

It is also involved in sporulation [].

>PRK11906 transcriptional regulator; Provisional

Probab=97.54  E-value=0.0008  Score=76.83  Aligned_cols=126  Identities=19%  Similarity=0.122  Sum_probs=104.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhHhhhhc
Q 000742          130 HYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMEL---------DNLEEAKKFLIRGLEICNEEE  200 (1313)
Q Consensus       130 ~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~---------g~~~~A~~~~~~al~~~~~~~  200 (1313)
                      ....+.|...|.+|+...            ...|.++.+|..+|.++...         .+..+|....++|+++     
T Consensus       271 ~~~~~~Al~lf~ra~~~~------------~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel-----  333 (458)
T PRK11906        271 PESIYRAMTIFDRLQNKS------------DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI-----  333 (458)
T ss_pred             HHHHHHHHHHHHHHhhcc------------cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc-----
Confidence            356677888888888220            11567889999999888764         2355677777888777     


Q ss_pred             cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 000742          201 VSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQ  280 (1313)
Q Consensus       201 ~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~  280 (1313)
                          ++..+.++..+|.+....++++.|+..|++|+.+.|      ..+.+++..|.+....|+.++|++.+++|+++.|
T Consensus       334 ----d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~P------n~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP  403 (458)
T PRK11906        334 ----TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHST------DIASLYYYRALVHFHNEKIEEARICIDKSLQLEP  403 (458)
T ss_pred             ----CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCC------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc
Confidence                445678999999999999999999999999999977      8999999999999999999999999999999987


Q ss_pred             Hc
Q 000742          281 SM  282 (1313)
Q Consensus       281 ~~  282 (1313)
                      .-
T Consensus       404 ~~  405 (458)
T PRK11906        404 RR  405 (458)
T ss_pred             hh
Confidence            54

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=0.0012  Score=71.06  Aligned_cols=122  Identities=21%  Similarity=0.245  Sum_probs=98.3

Q ss_pred             CCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHH
Q 000742           64 EKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSA  143 (1313)
Q Consensus        64 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~A  143 (1313)
                      .+..++.|..||.+|..+|++..|...| .+|+++.+++.+      .+..+|.+++...     +.....++...++++
T Consensus       152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY-~~A~rL~g~n~~------~~~g~aeaL~~~a-----~~~~ta~a~~ll~~a  219 (287)
T COG4235         152 NPGDAEGWDLLGRAYMALGRASDALLAY-RNALRLAGDNPE------ILLGLAEALYYQA-----GQQMTAKARALLRQA  219 (287)
T ss_pred             CCCCchhHHHHHHHHHHhcchhHHHHHH-HHHHHhCCCCHH------HHHHHHHHHHHhc-----CCcccHHHHHHHHHH
Confidence            3455889999999999999999999999 999999988764      4577788777652     335567899999999


Q ss_pred             HHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHH
Q 000742          144 MKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGN  217 (1313)
Q Consensus       144 l~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~  217 (1313)
                      +..               +|....+...+|..++..|+|.+|...++..++..+.     +.+....+-..++.
T Consensus       220 l~~---------------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~-----~~~rr~~ie~~ia~  273 (287)
T COG4235         220 LAL---------------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA-----DDPRRSLIERSIAR  273 (287)
T ss_pred             Hhc---------------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-----CCchHHHHHHHHHH
Confidence            988               4567899999999999999999999999999998765     34444444444433

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.54  E-value=0.045  Score=60.30  Aligned_cols=29  Identities=10%  Similarity=0.318  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHh-hCHHHHHHHHHHHHHH
Q 000742          381 DSFLVIGESYQKL-RKFNKAIKWYTKSWEM  409 (1313)
Q Consensus       381 ~~~~~lg~~y~~~-g~~~~A~~~~~kal~l  409 (1313)
                      .+|..|+.+-... |+-.++..|+-++++-
T Consensus       363 s~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         363 SAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            5667777777555 9999999999988853

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=0.042  Score=59.44  Aligned_cols=283  Identities=15%  Similarity=0.093  Sum_probs=182.1

Q ss_pred             hhHHHHHHHHHHHHHh--c--CcH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHH
Q 000742            6 MQMSEAKRAYRSAKEE--G--NRQ----EEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEV   77 (1313)
Q Consensus         6 ~~~~~A~~~l~~a~~~--~--~~~----~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~   77 (1313)
                      .++++++..|......  +  ..+    ..-.....+|..|...|++++-.......-...... +....+.....+-..
T Consensus        18 ~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v-~KakaaKlvR~Lvd~   96 (411)
T KOG1463|consen   18 NQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSV-SKAKAAKLVRSLVDM   96 (411)
T ss_pred             chhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHH
Confidence            4567888888877763  1  111    111346789999999999988777666555444332 122223333333333


Q ss_pred             HH-HccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCC
Q 000742           78 YL-RLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPAT  156 (1313)
Q Consensus        78 y~-~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~  156 (1313)
                      +. .-+....-+..+ ...++.+............-..+...|+..        ++|.+|+......+.-.+++.+..  
T Consensus        97 ~~~~~~~~~~~i~l~-~~cIeWA~~ekRtFLRq~Learli~Ly~d~--------~~YteAlaL~~~L~rElKKlDDK~--  165 (411)
T KOG1463|consen   97 FLKIDDGTGDQIELC-TECIEWAKREKRTFLRQSLEARLIRLYNDT--------KRYTEALALINDLLRELKKLDDKI--  165 (411)
T ss_pred             HccCCCCcchHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHHHHHHhccccc--
Confidence            33 235566778888 999999887776665666667888899877        999999999999999888888765  


Q ss_pred             CcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000742          157 SRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDI  236 (1313)
Q Consensus       157 ~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal  236 (1313)
                             ...+++..-..+|+...+..+|...+..|-..+...  .-.+...+..-..-|..+....+|.-|..||-+|.
T Consensus       166 -------lLvev~llESK~y~~l~Nl~KakasLTsART~Anai--YcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAf  236 (411)
T KOG1463|consen  166 -------LLVEVHLLESKAYHALRNLPKAKASLTSARTTANAI--YCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAF  236 (411)
T ss_pred             -------ceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhccc--ccCHHHHHHHHHhccceeecccccchHHHHHHHHH
Confidence                   567788888899999999999999988887665443  12233455555666888888899999999999999


Q ss_pred             HHHHHhchhhhHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHHHHHccChhHHHHHHHH--hHHHHHHHHHHHHHH
Q 000742          237 IICKKIEHCQGEAKGYINLGELHYRVQKYDE--AILCYQKALNLAQSMEDEDALASQIDQ--NIETVKKAIEVMDEL  309 (1313)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~--A~~~~~kal~~~~~~~~~~~~~~~~~~--~lg~~~~a~~~~~~a  309 (1313)
                      +-+...++......++-.+-.+-...+..++  ++-.-+.+++.....-+.....+.++.  .+.++..|+..|..-
T Consensus       237 Egf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~e  313 (411)
T KOG1463|consen  237 EGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKE  313 (411)
T ss_pred             ccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHH
Confidence            9887776654444443333333344445444  333344444422222222222233332  245555666555543

>PRK11906 transcriptional regulator; Provisional

Probab=97.53  E-value=0.0013  Score=75.23  Aligned_cols=168  Identities=9%  Similarity=-0.003  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHcc---ChHHHHHHHHHHHH---HHHHHhcCHHHHHHHHHHHHHHHHHHhcc-CCcchhhHHHHHHHHHH
Q 000742           70 TCQSLGEVYLRLE---HFKDALIYQVKKHL---ELAKDASDLVEQQRACTQLGRTYYEMFLR-SDDDHYSIRNAKKYFKS  142 (1313)
Q Consensus        70 ~~~~lg~~y~~~g---~~~~A~~~~~~kal---~l~~~~~~~~~~a~a~~~lg~~y~~l~~~-~~~~~~~~~~A~~~~~~  142 (1313)
                      .++..|......+   ..+.|+..| .+|+   ++.|..      +.+|..++.+|...... .........+|....++
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf-~ra~~~~~ldp~~------a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~r  329 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIF-DRLQNKSDIQTLK------TECYCLLAECHMSLALHGKSELELAAQKALELLDY  329 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHH-HHHhhcccCCccc------HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence            4466676665554   345677788 8888   554433      46788888888876322 22245667778888888


Q ss_pred             HHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHc
Q 000742          143 AMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMEL  222 (1313)
Q Consensus       143 Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~  222 (1313)
                      |+++               .|..+.++..+|.+....++++.|+..|++|+.+         .|..+.+++..|.+....
T Consensus       330 Avel---------------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L---------~Pn~A~~~~~~~~~~~~~  385 (458)
T PRK11906        330 VSDI---------------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH---------STDIASLYYYRALVHFHN  385 (458)
T ss_pred             HHhc---------------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc---------CCccHHHHHHHHHHHHHc
Confidence            8877               3456889999999999999999999999999999         555789999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHH-HHHHhcCHHHHHHHHHH
Q 000742          223 RMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGE-LHYRVQKYDEAILCYQK  274 (1313)
Q Consensus       223 g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~k  274 (1313)
                      |+.++|++.+++|+++.|.     ........+-. .|+. ...++|+..|-+
T Consensus       386 G~~~~a~~~i~~alrLsP~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  432 (458)
T PRK11906        386 EKIEEARICIDKSLQLEPR-----RRKAVVIKECVDMYVP-NPLKNNIKLYYK  432 (458)
T ss_pred             CCHHHHHHHHHHHhccCch-----hhHHHHHHHHHHHHcC-CchhhhHHHHhh
Confidence            9999999999999999772     22222223322 4443 456667766643

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.52  E-value=0.0083  Score=59.09  Aligned_cols=165  Identities=13%  Similarity=0.075  Sum_probs=123.4

Q ss_pred             HHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhcc
Q 000742           73 SLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKE  152 (1313)
Q Consensus        73 ~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~  152 (1313)
                      .++.....+=+.+.+..-. .+.++++|...+       .+.+|.....+        |++.+|...|++++.-.     
T Consensus        61 ~~~~a~~q~ldP~R~~Rea-~~~~~~ApTvqn-------r~rLa~al~el--------Gr~~EA~~hy~qalsG~-----  119 (251)
T COG4700          61 TLLMALQQKLDPERHLREA-TEELAIAPTVQN-------RYRLANALAEL--------GRYHEAVPHYQQALSGI-----  119 (251)
T ss_pred             HHHHHHHHhcChhHHHHHH-HHHHhhchhHHH-------HHHHHHHHHHh--------hhhhhhHHHHHHHhccc-----
Confidence            4455555666777777666 777777776654       36778888877        99999999999987531     


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000742          153 NPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHI  232 (1313)
Q Consensus       153 ~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~  232 (1313)
                               ....+..+..++...+..+++..|...+++..+.-+.       ...+.....+|.+|...|++++|...|
T Consensus       120 ---------fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa-------~r~pd~~Ll~aR~laa~g~~a~Aesaf  183 (251)
T COG4700         120 ---------FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA-------FRSPDGHLLFARTLAAQGKYADAESAF  183 (251)
T ss_pred             ---------cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc-------cCCCCchHHHHHHHHhcCCchhHHHHH
Confidence                     1133567888999999999999999999998887433       223345677899999999999999999


Q ss_pred             HHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 000742          233 EQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQS  281 (1313)
Q Consensus       233 ~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~  281 (1313)
                      +.++..++       -+.+....+..+.++|+..+|..-+....+-..+
T Consensus       184 e~a~~~yp-------g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r  225 (251)
T COG4700         184 EVAISYYP-------GPQARIYYAEMLAKQGRLREANAQYVAVVDTAKR  225 (251)
T ss_pred             HHHHHhCC-------CHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence            99999876       2344555678888999988888777666554443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.51  E-value=0.0012  Score=65.44  Aligned_cols=105  Identities=15%  Similarity=0.104  Sum_probs=92.2

Q ss_pred             hHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHH
Q 000742           69 PTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQ  148 (1313)
Q Consensus        69 ~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~  148 (1313)
                      .-+-.-|.-++..|+|++|..-| ..|+++.|.... ......|.+.|.+...+        +.++.|+....+|+++  
T Consensus        96 d~lK~EGN~~F~ngdyeeA~skY-~~Ale~cp~~~~-e~rsIly~Nraaa~iKl--------~k~e~aI~dcsKaiel--  163 (271)
T KOG4234|consen   96 DSLKKEGNELFKNGDYEEANSKY-QEALESCPSTST-EERSILYSNRAAALIKL--------RKWESAIEDCSKAIEL--  163 (271)
T ss_pred             HHHHHHHHHhhhcccHHHHHHHH-HHHHHhCccccH-HHHHHHHhhhHHHHHHh--------hhHHHHHHHHHhhHhc--
Confidence            34556788899999999999999 999999988765 55677888999999988        9999999999999999  


Q ss_pred             HhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhh
Q 000742          149 TLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNE  198 (1313)
Q Consensus       149 ~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~  198 (1313)
                                   .|.+..++...|.+|.++.+|++|+.-|.+.++..+.
T Consensus       164 -------------~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs  200 (271)
T KOG4234|consen  164 -------------NPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPS  200 (271)
T ss_pred             -------------CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcc
Confidence                         5577788899999999999999999999999998544

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.51  E-value=0.007  Score=63.36  Aligned_cols=159  Identities=11%  Similarity=-0.006  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHH
Q 000742          210 RLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALA  289 (1313)
Q Consensus       210 ~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~  289 (1313)
                      .....-|.+|..-|++++|.+...+...+           .+...--.++.++.+.+-|...++++.+++.+..  ...+
T Consensus       109 i~~l~aa~i~~~~~~~deAl~~~~~~~~l-----------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~t--LtQL  175 (299)
T KOG3081|consen  109 IDLLLAAIIYMHDGDFDEALKALHLGENL-----------EAAALNVQILLKMHRFDLAEKELKKMQQIDEDAT--LTQL  175 (299)
T ss_pred             HHHHHhhHHhhcCCChHHHHHHHhccchH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH--HHHH
Confidence            45556678889999999998887763222           2223334567778888888888888877765321  0111


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742          290 SQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRI  369 (1313)
Q Consensus       290 ~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i  369 (1313)
                      +..|.++..                             |                        .       +-++.+.-+
T Consensus       176 A~awv~la~-----------------------------g------------------------g-------ek~qdAfyi  195 (299)
T KOG3081|consen  176 AQAWVKLAT-----------------------------G------------------------G-------EKIQDAFYI  195 (299)
T ss_pred             HHHHHHHhc-----------------------------c------------------------c-------hhhhhHHHH
Confidence            111111110                             0                        0       112223334


Q ss_pred             HHHhCC-chhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000742          370 ASELCD-KGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGY  447 (1313)
Q Consensus       370 ~~~~~~-~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl  447 (1313)
                      ++++.+ .+.........+.++..+|+|++|...++.|+.-.      +..+.++.++-.+-...|...++..-+-.-+
T Consensus       196 feE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd------~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL  268 (299)
T KOG3081|consen  196 FEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD------AKDPETLANLIVLALHLGKDAEVTERNLSQL  268 (299)
T ss_pred             HHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc------CCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence            444444 45667788889999999999999999999998543      3557778888888888888777665544433

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.48  E-value=1.6e-05  Score=65.86  Aligned_cols=59  Identities=31%  Similarity=0.358  Sum_probs=31.5

Q ss_pred             CcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCC
Q 000742          918 RLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNS  984 (1313)
Q Consensus       918 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~  984 (1313)
                      +|++|+|++|.|+..    -...|..+++|++|+|++|.|+.    .-+.+|..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i----~~~~f~~l~~L~~L~l~~N~l~~----i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEI----PPDSFSNLPNLETLDLSNNNLTS----IPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEE----CTTTTTTGTTESEEEETSSSESE----EETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCcc----CHHHHcCCCCCCEeEccCCccCc----cCHHHHcCCCCCCEEeCcCCc
Confidence            455666666655543    22345555566666666665553    112234556666666666664

...

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.45  E-value=0.0013  Score=75.77  Aligned_cols=120  Identities=15%  Similarity=0.091  Sum_probs=98.7

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 000742           34 IGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACT  113 (1313)
Q Consensus        34 lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~  113 (1313)
                      +-.++...+++++|+..+++..+..         .++...++.++...++..+|+..+ +++++..|..      +..+.
T Consensus       175 Ll~~l~~t~~~~~ai~lle~L~~~~---------pev~~~LA~v~l~~~~E~~AI~ll-~~aL~~~p~d------~~LL~  238 (395)
T PF09295_consen  175 LLKYLSLTQRYDEAIELLEKLRERD---------PEVAVLLARVYLLMNEEVEAIRLL-NEALKENPQD------SELLN  238 (395)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHhcC---------CcHHHHHHHHHHhcCcHHHHHHHH-HHHHHhCCCC------HHHHH
Confidence            4455666789999999999876543         346667999999999999999999 9999665544      35567


Q ss_pred             HHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000742          114 QLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRG  192 (1313)
Q Consensus       114 ~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~a  192 (1313)
                      ..+..+...        ++++.|++..++|..+               .|.....|..||.+|...|++++|+..+..+
T Consensus       239 ~Qa~fLl~k--------~~~~lAL~iAk~av~l---------------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  239 LQAEFLLSK--------KKYELALEIAKKAVEL---------------SPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHhc--------CCHHHHHHHHHHHHHh---------------CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            778888866        9999999999999988               4577899999999999999999999776643

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.43  E-value=0.0016  Score=74.29  Aligned_cols=69  Identities=17%  Similarity=0.119  Sum_probs=63.2

Q ss_pred             CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHH---HHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 000742          204 DDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEA---KGYINLGELHYRVQKYDEAILCYQKALNL  278 (1313)
Q Consensus       204 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~kal~~  278 (1313)
                      ..+..+.+++++|.+|..+|+|++|+..|++|+++.+      ...   .+|+++|.+|..+|++++|+.++++|+++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P------d~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNP------NPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4567889999999999999999999999999999977      434   56999999999999999999999999997

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.43  E-value=0.21  Score=60.25  Aligned_cols=164  Identities=12%  Similarity=0.071  Sum_probs=109.4

Q ss_pred             cCCHHHHHHHHHHHHhHhhhhccCCCchHHH----HHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHhchhhhHHH
Q 000742          179 LDNLEEAKKFLIRGLEICNEEEVSEDDDGRS----RLHHNLGNVYM----ELRMWDKSREHIEQDIIICKKIEHCQGEAK  250 (1313)
Q Consensus       179 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----~~~~~lg~~y~----~~g~~~~A~~~~~kal~~~~~~~~~~~~~~  250 (1313)
                      .|+-+.++..+.++.+. ..+     ....+    ..|+.....+.    .....+.|.+.++...+.+|      ..+.
T Consensus       201 ~gdR~~GL~~L~~~~~~-~~i-----~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP------~s~l  268 (468)
T PF10300_consen  201 SGDRELGLRLLWEASKS-ENI-----RSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYP------NSAL  268 (468)
T ss_pred             CCcHHHHHHHHHHHhcc-CCc-----chHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCC------CcHH
Confidence            58999999999998662 221     11111    11222222222    23456777777777777765      6777


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc
Q 000742          251 GYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTS  330 (1313)
Q Consensus       251 ~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~  330 (1313)
                      .++..|.++...|+.++|++.|++++....+...    +                                         
T Consensus       269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Q----l-----------------------------------------  303 (468)
T PF10300_consen  269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQ----L-----------------------------------------  303 (468)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHh----H-----------------------------------------
Confidence            8889999999999999999999998843322110    0                                         


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Q 000742          331 QERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMY  410 (1313)
Q Consensus       331 ~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~  410 (1313)
                                                                      ..-.++.+|+++..+.+|++|..+|.+..+..
T Consensus       304 ------------------------------------------------~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s  335 (468)
T PF10300_consen  304 ------------------------------------------------HHLCYFELAWCHMFQHDWEEAAEYFLRLLKES  335 (468)
T ss_pred             ------------------------------------------------HHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence                                                            01456668888888899999988888877532


Q ss_pred             HHhCCchhHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHH
Q 000742          411 KSIGNLEGQALAKVNMGNVLDSNGDW-------AGALDAFQEGYRIAVE  452 (1313)
Q Consensus       411 ~~~~~~~~~~~~~~~lg~~y~~~g~~-------~~A~~~~~kAl~i~~~  452 (1313)
                      .     -..+...|..|.+|...|+.       ++|..+|+++-.+..+
T Consensus       336 ~-----WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k  379 (468)
T PF10300_consen  336 K-----WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQK  379 (468)
T ss_pred             c-----cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhh
Confidence            2     23445567788888888888       6777777776666554

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.42  E-value=0.17  Score=54.70  Aligned_cols=220  Identities=15%  Similarity=0.066  Sum_probs=141.0

Q ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHH
Q 000742           16 RSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKH   95 (1313)
Q Consensus        16 ~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ka   95 (1313)
                      .+....+|....++.+ .+|.+....+.--+-.+.++++..-..++....   +-...-+.+....|++.+|-... ++.
T Consensus        55 ~kL~ssDP~~Vmart~-a~gl~~iaa~s~v~~ak~~dqav~dav~y~~ar---Ek~h~~aai~~~~g~~h~a~~~w-dkl  129 (491)
T KOG2610|consen   55 EKLSSSDPEAVMARTF-ALGLVLIAAASNVEFAKKMDQAVIDAVKYGNAR---EKRHAKAAILWGRGKHHEAAIEW-DKL  129 (491)
T ss_pred             HHHhcCChHHHHHHHH-HHhhhhhhccchhhHHHHHHHHHHHHHHHhhhH---HhhhhhHHHhhccccccHHHHHH-HHH
Confidence            3444455555555543 455555555544444455555554443332211   22223445566778898888888 888


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHH
Q 000742           96 LELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGML  175 (1313)
Q Consensus        96 l~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~  175 (1313)
                      ++-+|..-      .++..--..+..+        |+.+.-...+++.+..   -+.        ..|-+..+...++..
T Consensus       130 L~d~PtDl------la~kfsh~a~fy~--------G~~~~~k~ai~kIip~---wn~--------dlp~~sYv~GmyaFg  184 (491)
T KOG2610|consen  130 LDDYPTDL------LAVKFSHDAHFYN--------GNQIGKKNAIEKIIPK---WNA--------DLPCYSYVHGMYAFG  184 (491)
T ss_pred             HHhCchhh------hhhhhhhhHHHhc--------cchhhhhhHHHHhccc---cCC--------CCcHHHHHHHHHHhh
Confidence            88776542      1222223333333        5444444444444322   111        134667778888888


Q ss_pred             HHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHH
Q 000742          176 QMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINL  255 (1313)
Q Consensus       176 y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~l  255 (1313)
                      +...|-|++|.+...+|+++         .+....+....+.++...|++.++.++..+.-..-++  .......-|...
T Consensus       185 L~E~g~y~dAEk~A~ralqi---------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~--s~mlasHNyWH~  253 (491)
T KOG2610|consen  185 LEECGIYDDAEKQADRALQI---------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ--SWMLASHNYWHT  253 (491)
T ss_pred             HHHhccchhHHHHHHhhccC---------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh--hhHHHhhhhHHH
Confidence            99999999999999999998         4446778889999999999999999998877655442  122345567788


Q ss_pred             HHHHHHhcCHHHHHHHHHHHH
Q 000742          256 GELHYRVQKYDEAILCYQKAL  276 (1313)
Q Consensus       256 a~~~~~~g~~~~A~~~~~kal  276 (1313)
                      |.+|...+.|+.|++.|..-+
T Consensus       254 Al~~iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  254 ALFHIEGAEYEKALEIYDREI  274 (491)
T ss_pred             HHhhhcccchhHHHHHHHHHH
Confidence            899999999999999998744

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.40  E-value=0.0091  Score=62.00  Aligned_cols=180  Identities=10%  Similarity=0.054  Sum_probs=128.6

Q ss_pred             HHHHHHHHHccChHHHHHHHHHHHHH-------HHHHhcC--------HHHHHHHHHHHHHHHHHHhccCCcchhhHHHH
Q 000742           72 QSLGEVYLRLEHFKDALIYQVKKHLE-------LAKDASD--------LVEQQRACTQLGRTYYEMFLRSDDDHYSIRNA  136 (1313)
Q Consensus        72 ~~lg~~y~~~g~~~~A~~~~~~kal~-------l~~~~~~--------~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A  136 (1313)
                      ..-|.+....|+..+.+.-+ .....       ..+.-..        ......+.+.+..++..+        ++|.-.
T Consensus       126 ~lhAe~~~~lgnpqesLdRl-~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~--------kEy~iS  196 (366)
T KOG2796|consen  126 ILHAELQQYLGNPQESLDRL-HKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGM--------KEYVLS  196 (366)
T ss_pred             HHHHHHHHhcCCcHHHHHHH-HHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcc--------hhhhhh
Confidence            34566777788888877655 43332       2222111        112334445556666544        777777


Q ss_pred             HHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHH
Q 000742          137 KKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLG  216 (1313)
Q Consensus       137 ~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg  216 (1313)
                      ...+.+.++..              .|..+.....+|.+.++.|+.+.|..+|++..+...++   +.-.....+..+.+
T Consensus       197 ~d~~~~vi~~~--------------~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL---~~~q~~~~V~~n~a  259 (366)
T KOG2796|consen  197 VDAYHSVIKYY--------------PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL---DGLQGKIMVLMNSA  259 (366)
T ss_pred             HHHHHHHHHhC--------------CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh---hccchhHHHHhhhh
Confidence            77777776631              12445677788999999999999999999887766554   33444566788889


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcc
Q 000742          217 NVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSME  283 (1313)
Q Consensus       217 ~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~  283 (1313)
                      .+|.-.++|.+|...|.+.+...+      ..+.+.++.|.+....|+...|++.++.++++.|...
T Consensus       260 ~i~lg~nn~a~a~r~~~~i~~~D~------~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  260 FLHLGQNNFAEAHRFFTEILRMDP------RNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             hheecccchHHHHHHHhhccccCC------CchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            999999999999999998888765      6778888899999999999999999999988877543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.38  E-value=0.0025  Score=61.23  Aligned_cols=113  Identities=19%  Similarity=0.160  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHH
Q 000742           29 RWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQ  108 (1313)
Q Consensus        29 ~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~  108 (1313)
                      ..++.-|...+..|+|++|++.|+......+   ..+....+...+|.+|+..++|++|+..+ ++-+++.|..++..  
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP---~g~ya~qAqL~l~yayy~~~~y~~A~a~~-~rFirLhP~hp~vd--   84 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDTRYP---FGEYAEQAQLDLAYAYYKQGDYEEAIAAY-DRFIRLHPTHPNVD--   84 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC---CCcccHHHHHHHHHHHHHccCHHHHHHHH-HHHHHhCCCCCCcc--
Confidence            3478899999999999999999998776653   23444688999999999999999999999 99999999887644  


Q ss_pred             HHHHHHHHHHHHHHhc-------cCCcchhhHHHHHHHHHHHHHHHH
Q 000742          109 QRACTQLGRTYYEMFL-------RSDDDHYSIRNAKKYFKSAMKLAQ  148 (1313)
Q Consensus       109 a~a~~~lg~~y~~l~~-------~~~~~~~~~~~A~~~~~~Al~l~~  148 (1313)
                       -+++..|.+++.+..       ....+.+...+|...|++.++.+.
T Consensus        85 -Ya~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP  130 (142)
T PF13512_consen   85 -YAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYP  130 (142)
T ss_pred             -HHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCc
Confidence             678999999887733       445555667788888887776643

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.38  E-value=0.00032  Score=60.58  Aligned_cols=63  Identities=16%  Similarity=0.371  Sum_probs=57.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcc
Q 000742          215 LGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSME  283 (1313)
Q Consensus       215 lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~  283 (1313)
                      |..+|...++|++|++++++++.+.|      .....+...|.+|..+|++++|+..++++++..|+..
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~~p------~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~   63 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALELDP------DDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP   63 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHhCc------ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence            35789999999999999999999977      7889999999999999999999999999999888543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.34  E-value=0.00015  Score=92.41  Aligned_cols=128  Identities=23%  Similarity=0.184  Sum_probs=73.7

Q ss_pred             CcCEEEecCCCCCHHHHHHHHHHHHhcccCccceEEEccCCC--CCHHHHHHHHhcccCCCCcCEEEecCCCCChhHHHH
Q 000742          859 TVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNR--FGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSY  936 (1313)
Q Consensus       859 ~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~~~~l~~L~Ls~n~--l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~  936 (1313)
                      .++.+.+-+|.+...         ......+.+.+|-+..|.  +.......|..    ++.|+.||||+|.=...    
T Consensus       524 ~~rr~s~~~~~~~~~---------~~~~~~~~L~tLll~~n~~~l~~is~~ff~~----m~~LrVLDLs~~~~l~~----  586 (889)
T KOG4658|consen  524 SVRRMSLMNNKIEHI---------AGSSENPKLRTLLLQRNSDWLLEISGEFFRS----LPLLRVLDLSGNSSLSK----  586 (889)
T ss_pred             heeEEEEeccchhhc---------cCCCCCCccceEEEeecchhhhhcCHHHHhh----CcceEEEECCCCCccCc----
Confidence            456666666654221         111223346666666665  44444433433    37777777777643333    


Q ss_pred             HHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHHHhhccCCccceeecCCCC
Q 000742          937 LSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLK 1013 (1313)
Q Consensus       937 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~ 1013 (1313)
                      +|..++.+-+|+.|+|+++.|.     .++..|.++..|.+|++..+..+..     ++..+..+++|++|.+....
T Consensus       587 LP~~I~~Li~LryL~L~~t~I~-----~LP~~l~~Lk~L~~Lnl~~~~~l~~-----~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  587 LPSSIGELVHLRYLDLSDTGIS-----HLPSGLGNLKKLIYLNLEVTGRLES-----IPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             CChHHhhhhhhhcccccCCCcc-----ccchHHHHHHhhheecccccccccc-----ccchhhhcccccEEEeeccc
Confidence            6666777777777777777776     5666777777777777776652111     12223346677777765544

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.34  E-value=0.6  Score=55.27  Aligned_cols=68  Identities=13%  Similarity=0.159  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHcCChhHHHHHHHhhHHHHHHhhcCHHHHHHHHHHHHHHHhhh
Q 000742          423 KVNMGNVLDSNGDWAGALDAFQEGYRIA--VEANLPSVQLSALENMHYSHMIRFDNIEEARRLQHEIDKLKESK  494 (1313)
Q Consensus       423 ~~~lg~~y~~~g~~~~A~~~~~kAl~i~--~~~~~~~~~~~al~~L~~~~~~~~~~~~~a~~~~e~~~~l~~s~  494 (1313)
                      +..+|+-....|..+.|+.   .|+.+.  ++. -|+.+.-.+..|+.+..+.++.-.+|.--.++.+.+.+..
T Consensus      1024 FmilAQrql~eg~v~~Al~---Tal~L~DYEd~-lpP~eiySllALaaca~raFGtCSKAfmkLe~~e~l~~a~ 1093 (1189)
T KOG2041|consen 1024 FMILAQRQLFEGRVKDALQ---TALILSDYEDF-LPPAEIYSLLALAACAVRAFGTCSKAFMKLEAFEELDDAE 1093 (1189)
T ss_pred             HHHHHHHHHHhchHHHHHH---HHhhhccHhhc-CCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhCCHHH
Confidence            3445555556666666654   344332  222 2334444555666666667777666666666666555433

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.33  E-value=0.057  Score=56.87  Aligned_cols=233  Identities=13%  Similarity=0.033  Sum_probs=145.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHH
Q 000742          171 NIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAK  250 (1313)
Q Consensus       171 ~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~  250 (1313)
                      .+|.-....+++++|+..|.+.+..--.. ........-.+..+++.+|...|++..-.+.....-+...+...+ ....
T Consensus         8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~-dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~-k~~K   85 (421)
T COG5159           8 ELANNAVKSNDIEKAIGEYKRILGKGVSK-DEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKP-KITK   85 (421)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHhcCCCCh-hhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcch-hHHH
Confidence            34555566789999999999987651100 001122345577899999999999987766666555544422111 1112


Q ss_pred             HHHHHHHH-HHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 000742          251 GYINLGEL-HYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGT  329 (1313)
Q Consensus       251 ~~~~la~~-~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~  329 (1313)
                      +...+-.- -+....++.-+..+...++.+.+....                                            
T Consensus        86 iirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~--------------------------------------------  121 (421)
T COG5159          86 IIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRK--------------------------------------------  121 (421)
T ss_pred             HHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHH--------------------------------------------
Confidence            22221111 122334444444444444443322111                                            


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 000742          330 SQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEM  409 (1313)
Q Consensus       330 ~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l  409 (1313)
                            ++... .-..++..+...+.|.+|+....-.+.-.++..+.+.....|..-..+|....+..++...+..|-..
T Consensus       122 ------fLr~~-Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~  194 (421)
T COG5159         122 ------FLRLE-LECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTL  194 (421)
T ss_pred             ------HHHHH-HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHH
Confidence                  00000 01234445556677888887777777777888889999999999999999999999999999988888


Q ss_pred             HHHhCCchhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh
Q 000742          410 YKSIGNLEGQ-ALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLP  456 (1313)
Q Consensus       410 ~~~~~~~~~~-~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~  456 (1313)
                      +....-++.. +..=..-|.......+|..|..||-+|++=+-.....
T Consensus       195 Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d  242 (421)
T COG5159         195 ANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMD  242 (421)
T ss_pred             hhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccch
Confidence            7766655443 3333344566677889999999999999866554443

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=97.33  E-value=0.12  Score=56.10  Aligned_cols=260  Identities=17%  Similarity=0.144  Sum_probs=160.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhHhhhhccC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHH
Q 000742          172 IGMLQMELDNLEEAKKFLIRGLEICNEEEVS-EDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAK  250 (1313)
Q Consensus       172 la~~y~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~  250 (1313)
                      .+.......++++++..|.+.+...+..... ......-....++|..|...|++++-.......-......        
T Consensus        10 ~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v--------   81 (411)
T KOG1463|consen   10 RAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSV--------   81 (411)
T ss_pred             HHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHh--------
Confidence            3444445567788888888888752221000 0112234567889999999999988776665554433311        


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc
Q 000742          251 GYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTS  330 (1313)
Q Consensus       251 ~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~  330 (1313)
                           +        -.+|.+..+..++......+.....      +.-..+.++.-.+                      
T Consensus        82 -----~--------KakaaKlvR~Lvd~~~~~~~~~~~~------i~l~~~cIeWA~~----------------------  120 (411)
T KOG1463|consen   82 -----S--------KAKAAKLVRSLVDMFLKIDDGTGDQ------IELCTECIEWAKR----------------------  120 (411)
T ss_pred             -----h--------hHHHHHHHHHHHHHHccCCCCcchH------HHHHHHHHHHHHH----------------------
Confidence                 1        1233344444444444443322211      1111111111000                      


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Q 000742          331 QERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMY  410 (1313)
Q Consensus       331 ~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~  410 (1313)
                       +.+.++.+. .-.+++..|...+.|.+|+........-.+++.+.....+++..-..+|+...+..+|...+.-|-...
T Consensus       121 -ekRtFLRq~-Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~A  198 (411)
T KOG1463|consen  121 -EKRTFLRQS-LEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTA  198 (411)
T ss_pred             -HhHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhh
Confidence             011111111 134567778888999999999998888888999999999999999999999999999999999888777


Q ss_pred             HHhCCchhHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhHHHHHHhhcCHHHHHHH
Q 000742          411 KSIGNLEGQALA-KVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEARRL  483 (1313)
Q Consensus       411 ~~~~~~~~~~~~-~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~~L~~~~~~~~~~~~~a~~~  483 (1313)
                      ..+.-+|..... =..=|..+....+|+.|..||-+|++=+...+++.....++..|-.+. ...+..++...+
T Consensus       199 naiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcK-IMln~~ddv~~l  271 (411)
T KOG1463|consen  199 NAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCK-IMLNLPDDVAAL  271 (411)
T ss_pred             cccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHH-HHhcCHHHHHHH
Confidence            766655554333 344566677779999999999999998888777644444554444322 233444444443

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.31  E-value=0.041  Score=67.91  Aligned_cols=155  Identities=18%  Similarity=0.175  Sum_probs=112.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhH
Q 000742           84 FKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLK  163 (1313)
Q Consensus        84 ~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p  163 (1313)
                      ..+|.+++ +.+.+..    +    ..+...+|.+|..-   ..+...+.++|+.+|+.+..-+.+....          
T Consensus       228 ~~~a~~~~-~~~a~~g----~----~~a~~~~g~~y~~G---~~g~~~d~e~a~~~l~~aa~~~~~~a~~----------  285 (552)
T KOG1550|consen  228 LSEAFKYY-REAAKLG----H----SEAQYALGICYLAG---TYGVTQDLESAIEYLKLAAESFKKAATK----------  285 (552)
T ss_pred             hhHHHHHH-HHHHhhc----c----hHHHHHHHHHHhhc---cccccccHHHHHHHHHHHHHHHHHHHhh----------
Confidence            45677777 5554432    2    34667888888743   1335578999999999998832111110          


Q ss_pred             HHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcC---CHHHHHHHHHHH
Q 000742          164 EYIDAHNNIGMLQMELD-----NLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELR---MWDKSREHIEQD  235 (1313)
Q Consensus       164 ~~~~~~~~la~~y~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g---~~~~A~~~~~ka  235 (1313)
                      ....+.+.+|.+|....     +++.|+.+|.+|-+.       +    ...+.+.+|.+|..-.   ++.+|.++|..|
T Consensus       286 ~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-------g----~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~A  354 (552)
T KOG1550|consen  286 GLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-------G----NPDAQYLLGVLYETGTKERDYRRAFEYYSLA  354 (552)
T ss_pred             cCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-------C----CchHHHHHHHHHHcCCccccHHHHHHHHHHH
Confidence            12347788999998843     788899999999776       2    2347788898888765   678999999999


Q ss_pred             HHHHHHhchhhhHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHH
Q 000742          236 IIICKKIEHCQGEAKGYINLGELHYR----VQKYDEAILCYQKALNLA  279 (1313)
Q Consensus       236 l~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~kal~~~  279 (1313)
                      ...        ....+++.+|.+|..    ..+.+.|..+|++|.+..
T Consensus       355 a~~--------G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  355 AKA--------GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             HHc--------CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence            876        778899999998874    357899999999998765

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.29  E-value=0.00016  Score=92.21  Aligned_cols=207  Identities=18%  Similarity=0.189  Sum_probs=97.6

Q ss_pred             CcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCC--CCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHH
Q 000742          918 RLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCS--ITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLL  995 (1313)
Q Consensus       918 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~--i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~  995 (1313)
                      ..+.+.+-+|.+...     +. -..|+.|++|-+..|.  +..    .....|..++.|+.||||+|.     .+..+|
T Consensus       524 ~~rr~s~~~~~~~~~-----~~-~~~~~~L~tLll~~n~~~l~~----is~~ff~~m~~LrVLDLs~~~-----~l~~LP  588 (889)
T KOG4658|consen  524 SVRRMSLMNNKIEHI-----AG-SSENPKLRTLLLQRNSDWLLE----ISGEFFRSLPLLRVLDLSGNS-----SLSKLP  588 (889)
T ss_pred             heeEEEEeccchhhc-----cC-CCCCCccceEEEeecchhhhh----cCHHHHhhCcceEEEECCCCC-----ccCcCC
Confidence            455555555544321     11 1234456666666664  221    111224556667777776655     133455


Q ss_pred             HhhccCCccceeecCCCCCChHHHHHHHHHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHH
Q 000742          996 VKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCI 1075 (1313)
Q Consensus       996 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 1075 (1313)
                      ..++.+-+|++|+|+++.+. ..|..+..+.   .|.+|++..+..-..-     ..+...+++|++|.+-.-.......
T Consensus       589 ~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk---~L~~Lnl~~~~~l~~~-----~~i~~~L~~Lr~L~l~~s~~~~~~~  659 (889)
T KOG4658|consen  589 SSIGELVHLRYLDLSDTGIS-HLPSGLGNLK---KLIYLNLEVTGRLESI-----PGILLELQSLRVLRLPRSALSNDKL  659 (889)
T ss_pred             hHHhhhhhhhcccccCCCcc-ccchHHHHHH---hhheeccccccccccc-----cchhhhcccccEEEeeccccccchh
Confidence            56666666667777766665 2344444443   3666666655421110     1112223567777765554221111


Q ss_pred             HHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEccCCCC
Q 000742         1076 HKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNAS 1155 (1313)
Q Consensus      1076 ~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i 1155 (1313)
                        .-..+..+.+|+.|.......  .....+..+..- ....+.+.+.++...     ..+..+..+.+|+.|.+.++.+
T Consensus       660 --~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L-~~~~~~l~~~~~~~~-----~~~~~~~~l~~L~~L~i~~~~~  729 (889)
T KOG4658|consen  660 --LLKELENLEHLENLSITISSV--LLLEDLLGMTRL-RSLLQSLSIEGCSKR-----TLISSLGSLGNLEELSILDCGI  729 (889)
T ss_pred             --hHHhhhcccchhhheeecchh--HhHhhhhhhHHH-HHHhHhhhhcccccc-----eeecccccccCcceEEEEcCCC
Confidence              122334555566555533332  111111111100 001223333222221     2445567777888888888887


Q ss_pred             Chh
Q 000742         1156 KEL 1158 (1313)
Q Consensus      1156 ~~~ 1158 (1313)
                      .+.
T Consensus       730 ~e~  732 (889)
T KOG4658|consen  730 SEI  732 (889)
T ss_pred             chh
Confidence            655

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.26  E-value=0.044  Score=54.21  Aligned_cols=162  Identities=9%  Similarity=0.053  Sum_probs=113.2

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 000742           35 GDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQ  114 (1313)
Q Consensus        35 g~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~  114 (1313)
                      +....+.=+.+.+++...+.+++.+.       ..-.+.+|....+.|++.+|..+| ++++.-.-. .|    +..+..
T Consensus        63 ~~a~~q~ldP~R~~Rea~~~~~~ApT-------vqnr~rLa~al~elGr~~EA~~hy-~qalsG~fA-~d----~a~lLg  129 (251)
T COG4700          63 LMALQQKLDPERHLREATEELAIAPT-------VQNRYRLANALAELGRYHEAVPHY-QQALSGIFA-HD----AAMLLG  129 (251)
T ss_pred             HHHHHHhcChhHHHHHHHHHHhhchh-------HHHHHHHHHHHHHhhhhhhhHHHH-HHHhccccC-CC----HHHHHH
Confidence            33344444555555555555555433       345678999999999999999999 998863221 22    234667


Q ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000742          115 LGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLE  194 (1313)
Q Consensus       115 lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  194 (1313)
                      +++....+        +++..|...+++..+.-...             ..+.....+|.+|..+|++.+|...|+.++.
T Consensus       130 lA~Aqfa~--------~~~A~a~~tLe~l~e~~pa~-------------r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~  188 (251)
T COG4700         130 LAQAQFAI--------QEFAAAQQTLEDLMEYNPAF-------------RSPDGHLLFARTLAAQGKYADAESAFEVAIS  188 (251)
T ss_pred             HHHHHHhh--------ccHHHHHHHHHHHhhcCCcc-------------CCCCchHHHHHHHHhcCCchhHHHHHHHHHH
Confidence            77777776        77888877777766552211             1245678889999999999999999999999


Q ss_pred             HhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742          195 ICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK  240 (1313)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~  240 (1313)
                      .++.          ..+....+.....+|+.++|..-+....+...
T Consensus       189 ~ypg----------~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~  224 (251)
T COG4700         189 YYPG----------PQARIYYAEMLAKQGRLREANAQYVAVVDTAK  224 (251)
T ss_pred             hCCC----------HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence            8654          23344567888899999988887766655544

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=97.25  E-value=0.00012  Score=81.93  Aligned_cols=115  Identities=18%  Similarity=0.097  Sum_probs=63.2

Q ss_pred             ceEEEccCCCCCHHHHHHHHhc--ccCCCCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHH
Q 000742          891 DLTLDLHCNRFGPTTLFQICEC--PVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADA  968 (1313)
Q Consensus       891 l~~L~Ls~n~l~~~~~~~l~~~--l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  968 (1313)
                      +..++|--|.+.......+...  ...++.+++++|+.|.+.+.+...|+.-      .--|+++.|++++.++..+..-
T Consensus       137 l~~l~l~~cml~pdf~~kl~hs~~~rpnpr~r~~dls~npi~dkvpihl~~p------~~pl~lr~c~lsskfis~l~~q  210 (553)
T KOG4242|consen  137 LPPLGLLPCMLLPDFGQKLRHSTRARPNPRARQHDLSPNPIGDKVPIHLPQP------GNPLSLRVCELSSKFISKLLIQ  210 (553)
T ss_pred             CCccCchhccCchhhcccccchhhcCCcchhhhhccCCCcccccCCccccCC------CCccchhhhhhhhhHHHHhhhh
Confidence            4566666666655443333322  2235678899999999888744333321      1127788888888776665511


Q ss_pred             HhcCCCccEEEeCCCCCCChhhHHHHHHhhccCCccceeecCCCCC
Q 000742          969 LGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKL 1014 (1313)
Q Consensus       969 l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l 1014 (1313)
                       ..-..+++++|+.|.. . +.+..+.........++.++.+...+
T Consensus       211 -sg~~~lteldls~n~~-K-ddip~~~n~~a~~~vl~~ld~s~tgi  253 (553)
T KOG4242|consen  211 -SGRLWLTELDLSTNGG-K-DDIPRTLNKKAGTLVLFKLDRSTTGI  253 (553)
T ss_pred             -hccccccccccccCCC-C-ccchhHHHHhhhhhhhhccccccccc
Confidence             1124467777777762 2 22233333333444555555555443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.22  E-value=0.00099  Score=57.49  Aligned_cols=60  Identities=20%  Similarity=0.368  Sum_probs=54.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742          172 IGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK  240 (1313)
Q Consensus       172 la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~  240 (1313)
                      |..+|...++|++|++++++++.+         .|.....+..+|.+|..+|++++|+..++++++..+
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~---------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p   60 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALEL---------DPDDPELWLQRARCLFQLGRYEEALEDLERALELSP   60 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHh---------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence            356789999999999999999999         444678999999999999999999999999998876

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.20  E-value=1.1  Score=55.56  Aligned_cols=75  Identities=11%  Similarity=0.015  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHH
Q 000742           29 RWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQ  108 (1313)
Q Consensus        29 ~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~  108 (1313)
                      ..|..+|.+..+.|...+|++.|-+|        ++   ...|...-.+..+.|+|++-+.|+ ..|-+..+...-..+.
T Consensus      1105 ~vWsqlakAQL~~~~v~dAieSyika--------dD---ps~y~eVi~~a~~~~~~edLv~yL-~MaRkk~~E~~id~eL 1172 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA--------DD---PSNYLEVIDVASRTGKYEDLVKYL-LMARKKVREPYIDSEL 1172 (1666)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhc--------CC---cHHHHHHHHHHHhcCcHHHHHHHH-HHHHHhhcCccchHHH
Confidence            34778888888888888888888765        22   356777777778888898888888 7776655544333333


Q ss_pred             HHHHHHH
Q 000742          109 QRACTQL  115 (1313)
Q Consensus       109 a~a~~~l  115 (1313)
                      ..+|...
T Consensus      1173 i~AyAkt 1179 (1666)
T KOG0985|consen 1173 IFAYAKT 1179 (1666)
T ss_pred             HHHHHHh
Confidence            4444433

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.17  E-value=0.038  Score=50.28  Aligned_cols=125  Identities=11%  Similarity=0.016  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHH
Q 000742          108 QQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKK  187 (1313)
Q Consensus       108 ~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~  187 (1313)
                      .+.+|..|+..-.++      ..|.|++|..-+++|+++.+.+......   .+.--.+..+..|+..+..+|+|++++.
T Consensus         6 Va~aY~aLs~ae~ql------~~g~~~eAa~s~r~AM~~srtiP~eEaF---Dh~GFDA~chA~Ls~A~~~Lgry~e~L~   76 (144)
T PF12968_consen    6 VAMAYMALSDAERQL------QDGAYEEAAASCRKAMEVSRTIPAEEAF---DHDGFDAFCHAGLSGALAGLGRYDECLQ   76 (144)
T ss_dssp             HHHHHHHHHHHHHHH------HHT-HHHHHHHHHHHHHHHTTS-TTS------HHHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             HHHHHHHHHHHHHHH------HhhhHHHHHHHHHHHHHHhccCChHhhc---ccccHHHHHHHHHHHHHHhhccHHHHHH
Confidence            456677777766666      4588999999999999998877554322   1223456788889999999999999999


Q ss_pred             HHHHHHhHhhhhcc--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000742          188 FLIRGLEICNEEEV--SEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKK  241 (1313)
Q Consensus       188 ~~~~al~~~~~~~~--~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~  241 (1313)
                      ...+++..+..-..  .+.-.....+.++.|..+...|..++|+..|+.+-++...
T Consensus        77 sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaE  132 (144)
T PF12968_consen   77 SADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAE  132 (144)
T ss_dssp             HHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence            99999998765311  1223345667788899999999999999999999887654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.16  E-value=0.00071  Score=57.44  Aligned_cols=55  Identities=16%  Similarity=0.265  Sum_probs=37.5

Q ss_pred             HHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742          177 MELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK  240 (1313)
Q Consensus       177 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~  240 (1313)
                      ...|++++|+..|++++...+.         ...++..+|.+|...|++++|...+++++...+
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~   56 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPD---------NPEARLLLAQCYLKQGQYDEAEELLERLLKQDP   56 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTT---------SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred             hhccCHHHHHHHHHHHHHHCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            3457777777777777776332         456667777777777777777777777766654

...

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.15  E-value=0.026  Score=59.32  Aligned_cols=93  Identities=13%  Similarity=0.068  Sum_probs=48.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhchhhhH
Q 000742          173 GMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYME----LRMWDKSREHIEQDIIICKKIEHCQGE  248 (1313)
Q Consensus       173 a~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~kal~~~~~~~~~~~~  248 (1313)
                      -.++.++.+++-|.+.++++.++.++           .++..||..|..    .+++.+|.-+|++.-+..      +..
T Consensus       144 VqI~lk~~r~d~A~~~lk~mq~ided-----------~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~------~~T  206 (299)
T KOG3081|consen  144 VQILLKMHRFDLAEKELKKMQQIDED-----------ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT------PPT  206 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccchH-----------HHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc------CCC
Confidence            34455555666666666666555322           122333333332    234455555554443322      245


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc
Q 000742          249 AKGYINLGELHYRVQKYDEAILCYQKALNLAQSM  282 (1313)
Q Consensus       249 ~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~  282 (1313)
                      .......|.++..+|+|++|...++.|+.-....
T Consensus       207 ~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d  240 (299)
T KOG3081|consen  207 PLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD  240 (299)
T ss_pred             hHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence            5566666666666666666666666666554433

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.14  E-value=0.13  Score=59.85  Aligned_cols=255  Identities=13%  Similarity=0.085  Sum_probs=153.7

Q ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHH
Q 000742            9 SEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDAL   88 (1313)
Q Consensus         9 ~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~   88 (1313)
                      +...+.+....+..|+.  +-+....+..+...|+.+.|+.++..+++...+    .-..-.++.+|.++..+.+|.+|.
T Consensus       250 ~~~~~~Ll~~~~~~p~g--a~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~k----Q~~~l~~fE~aw~~v~~~~~~~aa  323 (546)
T KOG3783|consen  250 EECEKALKKYRKRYPKG--ALWLLMEARILSIKGNSEAAIDMESLSIPIRMK----QVKSLMVFERAWLSVGQHQYSRAA  323 (546)
T ss_pred             HHHHHHhHHHHHhCCCC--ccHHHHHHHHHHHcccHHHHHHHHHhcccHHHH----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44555556666666664  344778888999999999999999988873211    122567889999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHH-HHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHH-
Q 000742           89 IYQVKKHLELAKDASDLVEQQRACTQL-GRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYI-  166 (1313)
Q Consensus        89 ~~~~~kal~l~~~~~~~~~~a~a~~~l-g~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~-  166 (1313)
                      .++ ....+...    + ..+ .|..+ |-+|..-.+.-....++-++|..+++.+.++....+...|..+  +....+ 
T Consensus       324 d~~-~~L~desd----W-S~a-~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~--f~~RKve  394 (546)
T KOG3783|consen  324 DSF-DLLRDESD----W-SHA-FYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEK--FIVRKVE  394 (546)
T ss_pred             hHH-HHHHhhhh----h-hHH-HHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhH--HHHHHHH
Confidence            988 65554432    1 111 12223 3333211000011124556666666665555444222111100  000001 


Q ss_pred             ---------------HHHHHHHHHHHHc--CCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHH
Q 000742          167 ---------------DAHNNIGMLQMEL--DNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSR  229 (1313)
Q Consensus       167 ---------------~~~~~la~~y~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~  229 (1313)
                                     .-++.++.++..-  ...++.+ -+...+ ..++.   ++.....--+..+|.++..+|+...|.
T Consensus       395 rf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~-~~~~~---~d~Dd~~lk~lL~g~~lR~Lg~~~~a~  469 (546)
T KOG3783|consen  395 RFVKRGPLNASILLASPYYELAYFWNGFSRMSKNELE-KMRAEL-ENPKI---DDSDDEGLKYLLKGVILRNLGDSEVAP  469 (546)
T ss_pred             HHhccccccccccccchHHHHHHHHhhcccCChhhHH-HHHHHH-hccCC---CCchHHHHHHHHHHHHHHHcCCHHHHH
Confidence                           1123333333221  1222222 111111 11221   345556677888999999999999999


Q ss_pred             HHHHHHHHHHH-HhchhhhHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHcc
Q 000742          230 EHIEQDIIICK-KIEHCQGEAKGYINLGELHYRVQK-YDEAILCYQKALNLAQSME  283 (1313)
Q Consensus       230 ~~~~kal~~~~-~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~kal~~~~~~~  283 (1313)
                      .+|+.+++... ...+....+.++|.+|.+|+.++. ..+|.+++.+|.+...+..
T Consensus       470 ~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~  525 (546)
T KOG3783|consen  470 KCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYE  525 (546)
T ss_pred             HHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccc
Confidence            99999887633 335677789999999999999999 9999999999988775443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.12  E-value=0.00042  Score=58.86  Aligned_cols=57  Identities=16%  Similarity=0.197  Sum_probs=51.2

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc
Q 000742          220 MELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSM  282 (1313)
Q Consensus       220 ~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~  282 (1313)
                      ...|++++|++.|++++...|      ....+++.+|.+|...|++++|...+++++...|+.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~   58 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNP------DNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN   58 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTT------TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred             hhccCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence            578999999999999999876      788899999999999999999999999999887764

...

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.11  E-value=0.012  Score=61.23  Aligned_cols=143  Identities=11%  Similarity=0.137  Sum_probs=121.4

Q ss_pred             hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742          161 FLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK  240 (1313)
Q Consensus       161 ~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~  240 (1313)
                      |......+.+.++.++...|+|.-.+..+.+.++..        ++........+|.+-.+.|+.+.|..||+..-+...
T Consensus       172 W~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~--------~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~  243 (366)
T KOG2796|consen  172 WRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYY--------PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ  243 (366)
T ss_pred             HHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhC--------CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh
Confidence            455667788889999999999999999999999864        233556778899999999999999999998887777


Q ss_pred             HhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000742          241 KIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKK  311 (1313)
Q Consensus       241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~  311 (1313)
                      +.+.......+..+.+.+|.-.++|..|...|.+.+..+++........+.+...+|+...|++.++.+..
T Consensus       244 kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~  314 (366)
T KOG2796|consen  244 KLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ  314 (366)
T ss_pred             hhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence            77777778888999999999999999999999999998887766666667788889999999998887764

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.08  E-value=0.00016  Score=67.37  Aligned_cols=85  Identities=21%  Similarity=0.222  Sum_probs=39.0

Q ss_pred             eeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEccCCCCChhhhhhh--cccccccCCcccccccccccccccccccccc
Q 000742         1117 LKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKELTLQQN--LSSVNSENLQPALKTSDCVSKEVDTDQHGLF 1194 (1313)
Q Consensus      1117 L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~~--l~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~ 1194 (1313)
                      +..|+|+.|+|..  +......+.....|+..+|++|.+.+..-++.  +.+++.++|.+|.++.+|+            
T Consensus        29 ~h~ldLssc~lm~--i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPe------------   94 (177)
T KOG4579|consen   29 LHFLDLSSCQLMY--IADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPE------------   94 (177)
T ss_pred             hhhcccccchhhH--HHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchH------------
Confidence            4445555555541  11122333444455555666665554422221  1123333333333333331            


Q ss_pred             cccCCCCcccccccCCccchhh
Q 000742         1195 AMNTDCNDLEVADSEDDKIRVE 1216 (1313)
Q Consensus      1195 ~~~~~l~~L~~L~Ls~n~l~~~ 1216 (1313)
                       .+..++.|+.|+++.|.+..+
T Consensus        95 -E~Aam~aLr~lNl~~N~l~~~  115 (177)
T KOG4579|consen   95 -ELAAMPALRSLNLRFNPLNAE  115 (177)
T ss_pred             -HHhhhHHhhhcccccCccccc
Confidence             135566667777777766544

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.08  E-value=0.054  Score=49.32  Aligned_cols=105  Identities=10%  Similarity=0.129  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCch------hhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCch-hH--
Q 000742          349 KSSMIFAWLKHCEYAKRKKRIASELCDKG------KLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLE-GQ--  419 (1313)
Q Consensus       349 ~~~~~~~~~~A~~~~~~a~~i~~~~~~~~------~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~-~~--  419 (1313)
                      .....+.|+.|..-+.+++.+.+.+....      ..+..|..|+.++..+|+|++++..-.+++..+..-+... +.  
T Consensus        18 ~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGk   97 (144)
T PF12968_consen   18 RQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGK   97 (144)
T ss_dssp             HHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccch
Confidence            33456788999999999999988765432      3578889999999999999999999999999988665522 22  


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 000742          420 --ALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEA  453 (1313)
Q Consensus       420 --~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~  453 (1313)
                        ..+.++.|.++...|+.++|+..|++|-++..+.
T Consensus        98 lWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaER  133 (144)
T PF12968_consen   98 LWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAER  133 (144)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-
T ss_pred             hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence              3456788999999999999999999999987653

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.06  E-value=0.35  Score=54.18  Aligned_cols=93  Identities=11%  Similarity=0.135  Sum_probs=72.4

Q ss_pred             HHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHH-h-------chhhh
Q 000742          177 MELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELR-MWDKSREHIEQDIIICKK-I-------EHCQG  247 (1313)
Q Consensus       177 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g-~~~~A~~~~~kal~~~~~-~-------~~~~~  247 (1313)
                      ..+|+++.|..++.|+-...... ........+..+++.|.-....+ +++.|...+++|+++.+. .       +....
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~-~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSL-DPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcC-CcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            45799999999999998775321 12334567889999999999999 999999999999999754 1       11245


Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHH
Q 000742          248 EAKGYINLGELHYRVQKYDEAIL  270 (1313)
Q Consensus       248 ~~~~~~~la~~~~~~g~~~~A~~  270 (1313)
                      ...++..++.+|...+.++...+
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~k  105 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEK  105 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHH
Confidence            67789999999999888765444

It is also involved in sporulation [].

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.04  E-value=0.00067  Score=67.90  Aligned_cols=87  Identities=23%  Similarity=0.273  Sum_probs=64.6

Q ss_pred             CcccEEEccCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHH
Q 000742         1058 QESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIK 1137 (1313)
Q Consensus      1058 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~ 1137 (1313)
                      -....+||++|.|...      ..|..++.|.+|.|++|.|+...+ .|..++.    +|..|.|.+|+|...|-   ..
T Consensus        42 d~~d~iDLtdNdl~~l------~~lp~l~rL~tLll~nNrIt~I~p-~L~~~~p----~l~~L~LtnNsi~~l~d---l~  107 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKL------DNLPHLPRLHTLLLNNNRITRIDP-DLDTFLP----NLKTLILTNNSIQELGD---LD  107 (233)
T ss_pred             cccceecccccchhhc------ccCCCccccceEEecCCcceeecc-chhhhcc----ccceEEecCcchhhhhh---cc
Confidence            3567788888887554      246678889999999999885443 3445443    48999999999876542   24


Q ss_pred             HhhcCCCccEEEccCCCCChh
Q 000742         1138 ALSENDTLEELNLADNASKEL 1158 (1313)
Q Consensus      1138 ~l~~~~~L~~L~Ls~N~i~~~ 1158 (1313)
                      -+..|++|+.|.+-+|.+++.
T Consensus       108 pLa~~p~L~~Ltll~Npv~~k  128 (233)
T KOG1644|consen  108 PLASCPKLEYLTLLGNPVEHK  128 (233)
T ss_pred             hhccCCccceeeecCCchhcc
Confidence            577889999999999998876

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.01  E-value=0.00028  Score=70.51  Aligned_cols=80  Identities=25%  Similarity=0.161  Sum_probs=37.8

Q ss_pred             eEEEccCCCCCHHHHHHHHhcccCCCCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhc
Q 000742          892 LTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGA  971 (1313)
Q Consensus       892 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~  971 (1313)
                      ..+||++|.+.....      +..+++|.+|.|++|+|+..+    +..-...++|.+|.|.+|+|...+-  + .-+..
T Consensus        45 d~iDLtdNdl~~l~~------lp~l~rL~tLll~nNrIt~I~----p~L~~~~p~l~~L~LtnNsi~~l~d--l-~pLa~  111 (233)
T KOG1644|consen   45 DAIDLTDNDLRKLDN------LPHLPRLHTLLLNNNRITRID----PDLDTFLPNLKTLILTNNSIQELGD--L-DPLAS  111 (233)
T ss_pred             ceecccccchhhccc------CCCccccceEEecCCcceeec----cchhhhccccceEEecCcchhhhhh--c-chhcc
Confidence            455666665543332      223355666666666665431    1111234455666666665543211  1 11334


Q ss_pred             CCCccEEEeCCCC
Q 000742          972 ESTLAQLCIGYNS  984 (1313)
Q Consensus       972 ~~~L~~L~Ls~n~  984 (1313)
                      |+.|++|.+-+|+
T Consensus       112 ~p~L~~Ltll~Np  124 (233)
T KOG1644|consen  112 CPKLEYLTLLGNP  124 (233)
T ss_pred             CCccceeeecCCc
Confidence            5555555555555

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=96.98  E-value=0.0083  Score=54.54  Aligned_cols=79  Identities=22%  Similarity=0.256  Sum_probs=67.3

Q ss_pred             HHhhCHHHHHHHHHHHHHHHHHhCCch---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhH
Q 000742          391 QKLRKFNKAIKWYTKSWEMYKSIGNLE---GQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMH  467 (1313)
Q Consensus       391 ~~~g~~~~A~~~~~kal~l~~~~~~~~---~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~~L~  467 (1313)
                      .+.|+|.+|++.+.+.++.........   ....+..++|.++...|++++|+..+++|++++++.++......++..+.
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~   88 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWLA   88 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence            568999999999999999887666544   55677899999999999999999999999999999999887777776666


Q ss_pred             HH
Q 000742          468 YS  469 (1313)
Q Consensus       468 ~~  469 (1313)
                      .+
T Consensus        89 ~l   90 (94)
T PF12862_consen   89 NL   90 (94)
T ss_pred             HH
Confidence            54

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.98  E-value=0.014  Score=59.91  Aligned_cols=128  Identities=16%  Similarity=0.189  Sum_probs=96.2

Q ss_pred             hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHH
Q 000742            7 QMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKD   86 (1313)
Q Consensus         7 ~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~   86 (1313)
                      ++++-..-++.+...........++..+|..|...|++++|++.|.++.+...   ...+...++..+..+....+++..
T Consensus        15 ~~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~---~~~~~id~~l~~irv~i~~~d~~~   91 (177)
T PF10602_consen   15 ELEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT---SPGHKIDMCLNVIRVAIFFGDWSH   91 (177)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC---CHHHHHHHHHHHHHHHHHhCCHHH
Confidence            33444444455554445555567799999999999999999999999887652   345568889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHH
Q 000742           87 ALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKL  146 (1313)
Q Consensus        87 A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l  146 (1313)
                      +..++ .++-.+....++.....+....-|..+...        ++|..|.+.|-.+..-
T Consensus        92 v~~~i-~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~--------r~f~~AA~~fl~~~~t  142 (177)
T PF10602_consen   92 VEKYI-EKAESLIEKGGDWERRNRLKVYEGLANLAQ--------RDFKEAAELFLDSLST  142 (177)
T ss_pred             HHHHH-HHHHHHHhccchHHHHHHHHHHHHHHHHHh--------chHHHHHHHHHccCcC
Confidence            99999 999999888777655555444555555544        8888888888766543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.95  E-value=0.67  Score=57.30  Aligned_cols=241  Identities=14%  Similarity=0.077  Sum_probs=137.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchh
Q 000742          166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHC  245 (1313)
Q Consensus       166 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~  245 (1313)
                      +.+|..+|.+..+.|...+|++.|-+|          +++    ..|...-.+..+.|.|++-++|+..|-+..++..-.
T Consensus      1104 p~vWsqlakAQL~~~~v~dAieSyika----------dDp----s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id 1169 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA----------DDP----SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID 1169 (1666)
T ss_pred             hHHHHHHHHHHHhcCchHHHHHHHHhc----------CCc----HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch
Confidence            468999999999999999999988876          222    356677778888899999999888876655432111


Q ss_pred             hhHHHHH---------------------HHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHH
Q 000742          246 QGEAKGY---------------------INLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIE  304 (1313)
Q Consensus       246 ~~~~~~~---------------------~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~  304 (1313)
                      .....+|                     ...|.-.+..|.|+.|.-.|...-.        +..++..+..+|.+.-|..
T Consensus      1170 ~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN--------~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1170 SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSN--------FAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred             HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhh--------HHHHHHHHHHHHHHHHHHH
Confidence            1111121                     2233334444555555444433222        2233445566677666665


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 000742          305 VMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQ--------QNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDK  376 (1313)
Q Consensus       305 ~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~--------~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~  376 (1313)
                      .-.++-.     .+.+.....+--+.++- .+.+        .+..+..+.+.|...|-|++-+..++.++.+.+.-.  
T Consensus      1242 ~aRKAns-----~ktWK~VcfaCvd~~EF-rlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHM-- 1313 (1666)
T KOG0985|consen 1242 AARKANS-----TKTWKEVCFACVDKEEF-RLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHM-- 1313 (1666)
T ss_pred             Hhhhccc-----hhHHHHHHHHHhchhhh-hHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHH--
Confidence            5544421     01111111111111110 0111        134577888888888999999988888887765543  


Q ss_pred             hhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH--HHhCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 000742          377 GKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMY--KSIGNLEGQALAKVNMGNVLDSNGDWAGALD  441 (1313)
Q Consensus       377 ~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~--~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~  441 (1313)
                          ..+..+|..|.+- ++++-.++++--+.-.  ++.-..-+++..|..+-..|.+-..|+.|.-
T Consensus      1314 ----gmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1314 ----GMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred             ----HHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence                5667777777543 4566665554433211  1111122445567777777777777776654

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.93  E-value=0.0021  Score=46.39  Aligned_cols=33  Identities=21%  Similarity=0.514  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 000742          422 AKVNMGNVLDSNGDWAGALDAFQEGYRIAVEAN  454 (1313)
Q Consensus       422 ~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~  454 (1313)
                      ++.+||.+|..+|+|++|+.+|++++.+..+.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~   33 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPE   33 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence            356677777777777777777777776665544

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.91  E-value=1.9  Score=53.27  Aligned_cols=90  Identities=19%  Similarity=0.029  Sum_probs=72.8

Q ss_pred             chhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742            4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH   83 (1313)
Q Consensus         4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~   83 (1313)
                      +.+++.+|.+...+..+..|...-|.+  .-|..+.+.|++++|...++.. ...     ..+.-.++..+-.+|..+++
T Consensus        21 d~~qfkkal~~~~kllkk~Pn~~~a~v--LkaLsl~r~gk~~ea~~~Le~~-~~~-----~~~D~~tLq~l~~~y~d~~~   92 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKHPNALYAKV--LKALSLFRLGKGDEALKLLEAL-YGL-----KGTDDLTLQFLQNVYRDLGK   92 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHCCCcHHHHH--HHHHHHHHhcCchhHHHHHhhh-ccC-----CCCchHHHHHHHHHHHHHhh
Confidence            357899999999999999999887744  6788889999999999666533 221     22235678888999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHh
Q 000742           84 FKDALIYQVKKHLELAKDA  102 (1313)
Q Consensus        84 ~~~A~~~~~~kal~l~~~~  102 (1313)
                      +++|...| +++...+|..
T Consensus        93 ~d~~~~~Y-e~~~~~~P~e  110 (932)
T KOG2053|consen   93 LDEAVHLY-ERANQKYPSE  110 (932)
T ss_pred             hhHHHHHH-HHHHhhCCcH
Confidence            99999999 9999988873

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.90  E-value=0.02  Score=61.85  Aligned_cols=108  Identities=15%  Similarity=0.171  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000742          164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIE  243 (1313)
Q Consensus       164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~  243 (1313)
                      ..+.-|-.-|.-|+...+|..|...|.++++.-     ..++...+..|.|.|.+....|+|..|+....+|+.+.+   
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k-----c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P---  150 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKK-----CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKP---  150 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc-----CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCc---
Confidence            567888888999999999999999999999862     246777899999999999999999999999999999976   


Q ss_pred             hhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc
Q 000742          244 HCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSM  282 (1313)
Q Consensus       244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~  282 (1313)
                         ....+|+.-|.+++.+.++.+|..+.+..+.++.+.
T Consensus       151 ---~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~  186 (390)
T KOG0551|consen  151 ---THLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEA  186 (390)
T ss_pred             ---chhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence               889999999999999999999999999998877543

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=96.89  E-value=0.056  Score=69.07  Aligned_cols=182  Identities=13%  Similarity=0.109  Sum_probs=147.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHH
Q 000742          131 YSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSR  210 (1313)
Q Consensus       131 ~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  210 (1313)
                      +.+.+|.+ ..+++.+.......       ..|..+..|..++.++...+++++|+.+-.+|.-+.+.. .+.+.+....
T Consensus       946 ~~~~~~~~-~~~slnl~~~v~~~-------~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~-~g~ds~~t~~ 1016 (1236)
T KOG1839|consen  946 DGFSEAYE-LPESLNLLNNVMGV-------LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERV-LGKDSPNTKL 1016 (1236)
T ss_pred             cchhhhhh-hhhhhhHHHHhhhh-------cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechh-ccCCCHHHHH
Confidence            56666766 66666666543322       256889999999999999999999999999998887764 3467888999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--chhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccC-hhH
Q 000742          211 LHHNLGNVYMELRMWDKSREHIEQDIIICKKI--EHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMED-EDA  287 (1313)
Q Consensus       211 ~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~-~~~  287 (1313)
                      .|.+++...+..++...|...+.++..+..-.  .++|..+....+++.++...++++.|+++.+.|.+....... ...
T Consensus      1017 ~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l 1096 (1236)
T KOG1839|consen 1017 AYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKEL 1096 (1236)
T ss_pred             HhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccch
Confidence            99999999999999999999999998876432  457888889999999999999999999999999998877655 334


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742          288 LASQIDQNIETVKKAIEVMDELKKEEQNLKKLTR  321 (1313)
Q Consensus       288 ~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~  321 (1313)
                      ..+..+..+++...+.+.+..+....+....++.
T Consensus      1097 ~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~ 1130 (1236)
T KOG1839|consen 1097 ETALSYHALARLFESMKDFRNALEHEKVTYGIYK 1130 (1236)
T ss_pred             hhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHH
Confidence            4566788889999999999888777666555544

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.88  E-value=0.049  Score=62.53  Aligned_cols=213  Identities=13%  Similarity=0.036  Sum_probs=125.5

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcC----------
Q 000742           35 GDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASD----------  104 (1313)
Q Consensus        35 g~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~----------  104 (1313)
                      -.-.....+.++-++..++|+++.+..      +.+|..+|.-.  ..-..+|.+++ +++++..+..-.          
T Consensus       175 Mq~AWRERnp~aRIkaA~eALei~pdC------AdAYILLAEEe--A~Ti~Eae~l~-rqAvkAgE~~lg~s~~~~~~g~  245 (539)
T PF04184_consen  175 MQKAWRERNPQARIKAAKEALEINPDC------ADAYILLAEEE--ASTIVEAEELL-RQAVKAGEASLGKSQFLQHHGH  245 (539)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhhhhh------hHHHhhccccc--ccCHHHHHHHH-HHHHHHHHHhhchhhhhhcccc
Confidence            334456678888888888998888544      67777776532  23356777777 777776554310          


Q ss_pred             ---------HHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHH
Q 000742          105 ---------LVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGML  175 (1313)
Q Consensus       105 ---------~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~  175 (1313)
                               ..-...+-..+|.+...+        |+.++|++.++..++.....             +...++.++..+
T Consensus       246 ~~e~~~~Rdt~~~~y~KrRLAmCarkl--------Gr~~EAIk~~rdLlke~p~~-------------~~l~IrenLie~  304 (539)
T PF04184_consen  246 FWEAWHRRDTNVLVYAKRRLAMCARKL--------GRLREAIKMFRDLLKEFPNL-------------DNLNIRENLIEA  304 (539)
T ss_pred             hhhhhhccccchhhhhHHHHHHHHHHh--------CChHHHHHHHHHHHhhCCcc-------------chhhHHHHHHHH
Confidence                     001123445678888877        99999999999888763311             346789999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHH-cCC---------------HHHHHHHHHHHHHHH
Q 000742          176 QMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYME-LRM---------------WDKSREHIEQDIIIC  239 (1313)
Q Consensus       176 y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~-~g~---------------~~~A~~~~~kal~~~  239 (1313)
                      +..++.|.++...+.+.-++        .-+..+...+.-|....+ .++               -..|++.+.+|++..
T Consensus       305 LLelq~Yad~q~lL~kYdDi--------~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefN  376 (539)
T PF04184_consen  305 LLELQAYADVQALLAKYDDI--------SLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFN  376 (539)
T ss_pred             HHhcCCHHHHHHHHHHhccc--------cCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhC
Confidence            99999999999888775322        112233333333433222 222               134566677777665


Q ss_pred             HHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChh
Q 000742          240 KKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDED  286 (1313)
Q Consensus       240 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~  286 (1313)
                      +-....-...+.+..-=.-+.+.|+ .+|+.|.--.+...++..+..
T Consensus       377 PHVp~YLLe~K~LilPPehilkrGD-SEAiaYAf~hL~hWk~veGAL  422 (539)
T PF04184_consen  377 PHVPKYLLEMKSLILPPEHILKRGD-SEAIAYAFFHLQHWKRVEGAL  422 (539)
T ss_pred             CCCchhhhccCCCCCChHHhcCCCc-HHHHHHHHHHHHHHhcCHhHH
Confidence            5221100000000101122344554 777777777777766655543

The molecular function of this protein is uncertain.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.87  E-value=0.029  Score=57.70  Aligned_cols=109  Identities=17%  Similarity=0.179  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000742          164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIE  243 (1313)
Q Consensus       164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~  243 (1313)
                      ..-.++..+|..|.+.|++++|++.|.++.+....      .......+.++-.+....+++..+..++.+|-.+....+
T Consensus        34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~------~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~  107 (177)
T PF10602_consen   34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS------PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGG  107 (177)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc
Confidence            56789999999999999999999999999887543      566788899999999999999999999999999988766


Q ss_pred             hhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 000742          244 HCQGEAKGYINLGELHYRVQKYDEAILCYQKALNL  278 (1313)
Q Consensus       244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~  278 (1313)
                      +..........-|..+...++|.+|-..|-.+..-
T Consensus       108 d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t  142 (177)
T PF10602_consen  108 DWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST  142 (177)
T ss_pred             hHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence            65555555666677777889999999888776543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.86  E-value=0.0012  Score=49.98  Aligned_cols=36  Identities=42%  Similarity=0.525  Sum_probs=20.0

Q ss_pred             CcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCC
Q 000742          918 RLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSIT  958 (1313)
Q Consensus       918 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  958 (1313)
                      +|++|+|++|.|++     ++..+.++++|+.|++++|.|+
T Consensus         2 ~L~~L~l~~N~i~~-----l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITD-----LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SS-----HGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcc-----cCchHhCCCCCCEEEecCCCCC
Confidence            56666666666664     3334556666666666666655

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.82  E-value=0.00096  Score=50.46  Aligned_cols=38  Identities=37%  Similarity=0.382  Sum_probs=31.1

Q ss_pred             ceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEccCCCCChh
Q 000742         1116 CLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKEL 1158 (1313)
Q Consensus      1116 ~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~ 1158 (1313)
                      +|++|+|++|+|++     ++..+.++++|+.|+|++|+|++.
T Consensus         2 ~L~~L~l~~N~i~~-----l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITD-----LPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SS-----HGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcc-----cCchHhCCCCCCEEEecCCCCCCC
Confidence            48999999999984     566689999999999999999864

...

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.82  E-value=0.0035  Score=64.28  Aligned_cols=103  Identities=18%  Similarity=0.219  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhh
Q 000742          167 DAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQ  246 (1313)
Q Consensus       167 ~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~  246 (1313)
                      .-+..-|.-|+.-.+|+.|+..|.+|+.+         .|..+..|.+.+.+|+++++++.+.....+|+++.+      
T Consensus        11 ~qlkE~gnk~f~~k~y~~ai~~y~raI~~---------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~------   75 (284)
T KOG4642|consen   11 EQLKEQGNKCFIPKRYDDAIDCYSRAICI---------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDP------   75 (284)
T ss_pred             HHHHhccccccchhhhchHHHHHHHHHhc---------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh------
Confidence            33444456667778999999999999998         445678899999999999999999999999999987      


Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccC
Q 000742          247 GEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMED  284 (1313)
Q Consensus       247 ~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~  284 (1313)
                      ..+.+.+.+|........|++|+..+.+|..+......
T Consensus        76 N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~  113 (284)
T KOG4642|consen   76 NLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPF  113 (284)
T ss_pred             HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence            88999999999999999999999999999988876543

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.82  E-value=0.25  Score=49.85  Aligned_cols=101  Identities=19%  Similarity=0.148  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchh
Q 000742          166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHC  245 (1313)
Q Consensus       166 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~  245 (1313)
                      ..+...+|..+...+++++|+..++.++...      .+......+-..+|.+...+|++++|+..+.....       .
T Consensus        89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t------~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~-------~  155 (207)
T COG2976          89 VLAALELAKAEVEANNLDKAEAQLKQALAQT------KDENLKALAALRLARVQLQQKKADAALKTLDTIKE-------E  155 (207)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHccc------hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc-------c
Confidence            3456678889999999999999999998763      34556777889999999999999999887765432       2


Q ss_pred             hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 000742          246 QGEAKGYINLGELHYRVQKYDEAILCYQKALNLA  279 (1313)
Q Consensus       246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~  279 (1313)
                      ...+......|+++...|+-++|+..|++|++..
T Consensus       156 ~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         156 SWAAIVAELRGDILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence            3455566778999999999999999999999986

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.77  E-value=0.00043  Score=72.29  Aligned_cols=104  Identities=24%  Similarity=0.128  Sum_probs=51.2

Q ss_pred             CCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHH
Q 000742         1029 SCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALAS 1108 (1313)
Q Consensus      1029 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~ 1108 (1313)
                      .+.+.|++.++.|+|.   .++..    ++.|+.|.||-|.|+..      ..+..|++|++|.|..|.|.+.  ..|.-
T Consensus        19 ~~vkKLNcwg~~L~DI---sic~k----Mp~lEVLsLSvNkIssL------~pl~rCtrLkElYLRkN~I~sl--dEL~Y   83 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI---SICEK----MPLLEVLSLSVNKISSL------APLQRCTRLKELYLRKNCIESL--DELEY   83 (388)
T ss_pred             HHhhhhcccCCCccHH---HHHHh----cccceeEEeeccccccc------hhHHHHHHHHHHHHHhcccccH--HHHHH
Confidence            3455555555555542   22222    24566666666666554      1344566666666666666542  22222


Q ss_pred             HhcCCCCceeEEEeecCCCCH-HHHHHHHHHhhcCCCccEEE
Q 000742         1109 LLMNPQCCLKVLVLSKCQLGL-AGVLQLIKALSENDTLEELN 1149 (1313)
Q Consensus      1109 ~l~~~~~~L~~L~Ls~n~i~~-~g~~~l~~~l~~~~~L~~L~ 1149 (1313)
                      +..-|  +|++|+|..|.... .|-..-...|+.+|+|+.||
T Consensus        84 Lknlp--sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   84 LKNLP--SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhcCc--hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            21111  36666666665332 23233344556666666654

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.71  E-value=0.018  Score=59.31  Aligned_cols=113  Identities=19%  Similarity=0.170  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhcc---CCC------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000742          166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEV---SED------DDGRSRLHHNLGNVYMELRMWDKSREHIEQDI  236 (1313)
Q Consensus       166 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~---~~~------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal  236 (1313)
                      ..++..-|.-++..|+|.+|...|..|+...+.+..   +++      +......+.|++.|+...|+|-+++++....+
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            467888899999999999999999999987665421   111      22345678999999999999999999999988


Q ss_pred             HHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccC
Q 000742          237 IICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMED  284 (1313)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~  284 (1313)
                      ...+      ....+|+..|.++...-+..+|.+.+.+++++.|....
T Consensus       258 ~~~~------~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas  299 (329)
T KOG0545|consen  258 RHHP------GNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS  299 (329)
T ss_pred             hcCC------chHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence            8765      88999999999999999999999999999999886543

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=96.71  E-value=0.025  Score=72.03  Aligned_cols=198  Identities=16%  Similarity=0.117  Sum_probs=159.2

Q ss_pred             hhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHH
Q 000742           68 LPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDA--SDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMK  145 (1313)
Q Consensus        68 ~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~--~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~  145 (1313)
                      +.-....|......|.+.+|.+ . -+++.+..+.  .-+...+..|..++.++..+        +++++|+.+-.+|.-
T Consensus       932 a~~~~e~gq~~~~e~~~~~~~~-~-~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~--------~d~~~Ai~~~~ka~i 1001 (1236)
T KOG1839|consen  932 AKDSPEQGQEALLEDGFSEAYE-L-PESLNLLNNVMGVLHPEVASKYRSLAKLSNRL--------GDNQEAIAQQRKACI 1001 (1236)
T ss_pred             hhhhhhhhhhhhcccchhhhhh-h-hhhhhHHHHhhhhcchhHHHHHHHHHHHHhhh--------cchHHHHHhccccee
Confidence            3444566777777788888888 6 6666665533  22456778899999999988        999999999999988


Q ss_pred             HHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCH
Q 000742          146 LAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMW  225 (1313)
Q Consensus       146 l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~  225 (1313)
                      +.+......       .|.....|.+++...+..++...|+..+.++..+..=. .+.++|..+....+++.++...+++
T Consensus      1002 i~eR~~g~d-------s~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls-~ge~hP~~a~~~~nle~l~~~v~e~ 1073 (1236)
T KOG1839|consen 1002 ISERVLGKD-------SPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLS-SGEDHPPTALSFINLELLLLGVEEA 1073 (1236)
T ss_pred             eechhccCC-------CHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccc-cCCCCCchhhhhhHHHHHHhhHHHH
Confidence            877654443       46889999999999999999999999999998874332 2346788888889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhc--hhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcc
Q 000742          226 DKSREHIEQDIIICKKIE--HCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSME  283 (1313)
Q Consensus       226 ~~A~~~~~kal~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~  283 (1313)
                      +.|+.+.+.|.++..+..  ..-..+..+..++..+..++++..|....+....+.+...
T Consensus      1074 d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~ql 1133 (1236)
T KOG1839|consen 1074 DTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQL 1133 (1236)
T ss_pred             HHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhh
Confidence            999999999999877652  3445677888999999999999999999999998887643

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.70  E-value=0.61  Score=57.39  Aligned_cols=188  Identities=12%  Similarity=0.025  Sum_probs=116.7

Q ss_pred             HHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 000742           39 KNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRT  118 (1313)
Q Consensus        39 ~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~  118 (1313)
                      ...++|.+|++...+.++..|+      ...+...-|.++.++|++++|...+  +++...+..++     ..+..+-.+
T Consensus        20 ld~~qfkkal~~~~kllkk~Pn------~~~a~vLkaLsl~r~gk~~ea~~~L--e~~~~~~~~D~-----~tLq~l~~~   86 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKHPN------ALYAKVLKALSLFRLGKGDEALKLL--EALYGLKGTDD-----LTLQFLQNV   86 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHhcCchhHHHHH--hhhccCCCCch-----HHHHHHHHH
Confidence            3567888998888888776632      2566677888999999999999666  55554444432     356788899


Q ss_pred             HHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhh
Q 000742          119 YYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNE  198 (1313)
Q Consensus       119 y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~  198 (1313)
                      |..+        +++++|...|+++.....               . -.....+-.+|.+.+.|.+-.+.--+..+.+++
T Consensus        87 y~d~--------~~~d~~~~~Ye~~~~~~P---------------~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk  142 (932)
T KOG2053|consen   87 YRDL--------GKLDEAVHLYERANQKYP---------------S-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPK  142 (932)
T ss_pred             HHHH--------hhhhHHHHHHHHHHhhCC---------------c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            9988        999999999999988733               2 345555666677777776655443333333332


Q ss_pred             hccCCCchHHHHHHHHHHHHHHHcCCHHHHHH---------HHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHH
Q 000742          199 EEVSEDDDGRSRLHHNLGNVYMELRMWDKSRE---------HIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAI  269 (1313)
Q Consensus       199 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~---------~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  269 (1313)
                              .....|.-+..+.......+.+..         .+++.++..   +.....+.+.. .-.+...+|++++|.
T Consensus       143 --------~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~---gk~~s~aE~~L-yl~iL~~~~k~~eal  210 (932)
T KOG2053|consen  143 --------RAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKK---GKIESEAEIIL-YLLILELQGKYQEAL  210 (932)
T ss_pred             --------ccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccC---CccchHHHHHH-HHHHHHhcccHHHHH
Confidence                    123455555556665555555444         222222211   11111122211 124556788899999


Q ss_pred             HHHHHH
Q 000742          270 LCYQKA  275 (1313)
Q Consensus       270 ~~~~ka  275 (1313)
                      +++..-
T Consensus       211 ~~l~~~  216 (932)
T KOG2053|consen  211 EFLAIT  216 (932)
T ss_pred             HHHHHH
Confidence            998443

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.68  E-value=0.36  Score=56.25  Aligned_cols=272  Identities=10%  Similarity=-0.035  Sum_probs=146.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHH
Q 000742          170 NNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEA  249 (1313)
Q Consensus       170 ~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~  249 (1313)
                      +..-..+...+.++.  +...+++....+.     .+..+.....-|..+...|+.+.|+.+++.++...    -..-..
T Consensus       235 ~~~~~~~~~~p~~d~--~~~~~~Ll~~~~~-----~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~----~kQ~~~  303 (546)
T KOG3783|consen  235 YQFISFVLGTPNPDG--EECEKALKKYRKR-----YPKGALWLLMEARILSIKGNSEAAIDMESLSIPIR----MKQVKS  303 (546)
T ss_pred             HHHHHHHcCCCCccH--HHHHHHhHHHHHh-----CCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHH----HHHHHH
Confidence            333444444555444  3444444443332     33345566778888888899999999999998821    223556


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHH-HHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 000742          250 KGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALAS-QIDQNI-ETVKKAIEVMDELKKEEQNLKKLTRNMI---  324 (1313)
Q Consensus       250 ~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~-~~~~~l-g~~~~a~~~~~~a~~~~~~~~~l~~~l~---  324 (1313)
                      ..++.+|.++..+.+|.+|..++....+...-..-.+...+ .++..- .....+.+.-+++..+.+....+....+   
T Consensus       304 l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~  383 (546)
T KOG3783|consen  304 LMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNL  383 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccC
Confidence            78899999999999999999999887776543322222221 122111 1111112222222222221111111100   


Q ss_pred             -HhhCCchHHHHHHHHHH--HHHHHHH-HHHHHHHHHH----HHHHHHHHHH--HHHHhCCchhhHHHHHHHHHHHHHhh
Q 000742          325 -IAKGTSQERKYLLQQNA--SLDRLIE-KSSMIFAWLK----HCEYAKRKKR--IASELCDKGKLSDSFLVIGESYQKLR  394 (1313)
Q Consensus       325 -~~~~~~~~a~~~~~~~~--~l~~L~~-~~~~~~~~~~----A~~~~~~a~~--i~~~~~~~~~~a~~~~~lg~~y~~~g  394 (1313)
                       ..+.....+..+..+..  ...-++. .+..+-.|..    ...-.+++..  ......+.....--+..+|.++..+|
T Consensus       384 P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg  463 (546)
T KOG3783|consen  384 PLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLG  463 (546)
T ss_pred             chhHHHHHHHHHHhccccccccccccchHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcC
Confidence             00000001111111110  0000000 0111111111    0011111111  11122344455667788999999999


Q ss_pred             CHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Q 000742          395 KFNKAIKWYTKSWEMYKS-IGNLEGQALAKVNMGNVLDSNGD-WAGALDAFQEGYRIAVE  452 (1313)
Q Consensus       395 ~~~~A~~~~~kal~l~~~-~~~~~~~~~~~~~lg~~y~~~g~-~~~A~~~~~kAl~i~~~  452 (1313)
                      +...|..+|+.+++-... ..+..-.+.++|.+|..|..+|. ..+|..++.+|.+.+.+
T Consensus       464 ~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d  523 (546)
T KOG3783|consen  464 DSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD  523 (546)
T ss_pred             CHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence            999999999988865332 34455668899999999999998 99999999999887533

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=96.65  E-value=0.022  Score=56.62  Aligned_cols=83  Identities=17%  Similarity=0.185  Sum_probs=53.7

Q ss_pred             hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHH
Q 000742            7 QMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGE----------YVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGE   76 (1313)
Q Consensus         7 ~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~----------~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~   76 (1313)
                      -|+.|.+.++.....+|...++  ++.-|.++....+          +++|+.-|++|+.+.      +....+++.+|.
T Consensus         6 ~FE~ark~aea~y~~nP~Dadn--L~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~------P~~hdAlw~lGn   77 (186)
T PF06552_consen    6 FFEHARKKAEAAYAKNPLDADN--LTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN------PNKHDALWCLGN   77 (186)
T ss_dssp             HHHHHHHHHHHHHHH-TT-HHH--HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-------TT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHhHHH--HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC------CchHHHHHHHHH
Confidence            4778888888888889987666  7788877766544          345555555666555      334789999999


Q ss_pred             HHHHccC----hHHHHHHHHHHHHHH
Q 000742           77 VYLRLEH----FKDALIYQVKKHLEL   98 (1313)
Q Consensus        77 ~y~~~g~----~~~A~~~~~~kal~l   98 (1313)
                      +|..++.    ..+|..+| ++|.+.
T Consensus        78 A~ts~A~l~~d~~~A~~~F-~kA~~~  102 (186)
T PF06552_consen   78 AYTSLAFLTPDTAEAEEYF-EKATEY  102 (186)
T ss_dssp             HHHHHHHH---HHHHHHHH-HHHHHH
T ss_pred             HHHHHHhhcCChHHHHHHH-HHHHHH
Confidence            9988753    33444555 444443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.65  E-value=0.12  Score=58.62  Aligned_cols=171  Identities=21%  Similarity=0.270  Sum_probs=117.5

Q ss_pred             hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHH
Q 000742            5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNR----GEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLR   80 (1313)
Q Consensus         5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~----g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~   80 (1313)
                      ...+..|...+..+......    .....+|..|..-    .+..+|.++|+.+.+        .....+.+.+|.+|..
T Consensus        54 ~~~~~~a~~~~~~a~~~~~~----~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--------~g~~~a~~~lg~~~~~  121 (292)
T COG0790          54 PPDYAKALKSYEKAAELGDA----AALALLGQMYGAGKGVSRDKTKAADWYRCAAA--------DGLAEALFNLGLMYAN  121 (292)
T ss_pred             cccHHHHHHHHHHhhhcCCh----HHHHHHHHHHHhccCccccHHHHHHHHHHHhh--------cccHHHHHhHHHHHhc
Confidence            46678888888888774444    3366777777643    468889999995533        3346788899999987


Q ss_pred             ----ccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCC
Q 000742           81 ----LEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPAT  156 (1313)
Q Consensus        81 ----~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~  156 (1313)
                          ..++.+|..+| ++|.+......     ..+.+.+|..|..-. .......+...|...|.+|-..          
T Consensus       122 G~gv~~d~~~A~~~~-~~Aa~~g~~~a-----~~~~~~l~~~~~~g~-~~~~~~~~~~~A~~~~~~aa~~----------  184 (292)
T COG0790         122 GRGVPLDLVKALKYY-EKAAKLGNVEA-----ALAMYRLGLAYLSGL-QALAVAYDDKKALYLYRKAAEL----------  184 (292)
T ss_pred             CCCcccCHHHHHHHH-HHHHHcCChhH-----HHHHHHHHHHHHcCh-hhhcccHHHHhHHHHHHHHHHh----------
Confidence                45899999999 88877532211     344678888886420 0011112344777788777666          


Q ss_pred             CcchhhHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcC
Q 000742          157 SRSSFLKEYIDAHNNIGMLQME----LDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELR  223 (1313)
Q Consensus       157 ~~~~~~p~~~~~~~~la~~y~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g  223 (1313)
                             ....+...+|.+|..    ..++++|..+|.+|-+.       ++    ....+.++ ++...|
T Consensus       185 -------~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~-------g~----~~a~~~~~-~~~~~g  236 (292)
T COG0790         185 -------GNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ-------GD----GAACYNLG-LMYLNG  236 (292)
T ss_pred             -------cCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------CC----HHHHHHHH-HHHhcC
Confidence                   346788899988865    34899999999999776       22    56777888 666655

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.62  E-value=0.00063  Score=71.10  Aligned_cols=103  Identities=23%  Similarity=0.181  Sum_probs=69.5

Q ss_pred             CCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHHH
Q 000742          917 TRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLV  996 (1313)
Q Consensus       917 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~  996 (1313)
                      .+.+.|++.++.|+|.      .+...++.|++|.|+-|.|+.     +. .|..|+.|++|.|..|.|-+-+    -+.
T Consensus        19 ~~vkKLNcwg~~L~DI------sic~kMp~lEVLsLSvNkIss-----L~-pl~rCtrLkElYLRkN~I~sld----EL~   82 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI------SICEKMPLLEVLSLSVNKISS-----LA-PLQRCTRLKELYLRKNCIESLD----ELE   82 (388)
T ss_pred             HHhhhhcccCCCccHH------HHHHhcccceeEEeecccccc-----ch-hHHHHHHHHHHHHHhcccccHH----HHH
Confidence            5678888888888886      344567788888888888873     32 3567888888888888842222    223


Q ss_pred             hhccCCccceeecCCCCCChHHHHHHHH--HhhcCCccEEE
Q 000742          997 KLDTLKSFSELNLNGLKLSKPVVDRLCQ--LAKTSCLTHLM 1035 (1313)
Q Consensus       997 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~--l~~~~~L~~L~ 1035 (1313)
                      -|.++++|+.|.|..|...+.+......  +...++|+.||
T Consensus        83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            4567888888888888765544443322  33456777765

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.59  E-value=0.058  Score=64.98  Aligned_cols=126  Identities=18%  Similarity=0.060  Sum_probs=95.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHH
Q 000742          131 YSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSR  210 (1313)
Q Consensus       131 ~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  210 (1313)
                      ...+.|.+.+....+.               .|+-+..+...|.++...|+.++|++.|++++....+.     ......
T Consensus       247 ~~~~~a~~lL~~~~~~---------------yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~-----~Ql~~l  306 (468)
T PF10300_consen  247 VPLEEAEELLEEMLKR---------------YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEW-----KQLHHL  306 (468)
T ss_pred             CCHHHHHHHHHHHHHh---------------CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH-----HhHHHH
Confidence            4455566666655554               34446788899999999999999999999998643332     444567


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHH
Q 000742          211 LHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKY-------DEAILCYQKALNLAQS  281 (1313)
Q Consensus       211 ~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~kal~~~~~  281 (1313)
                      .++.+|.++..+.+|++|..++.+..+...     ...+..++..|.++...++.       ++|.++++++-.+..+
T Consensus       307 ~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-----WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k  379 (468)
T PF10300_consen  307 CYFELAWCHMFQHDWEEAAEYFLRLLKESK-----WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQK  379 (468)
T ss_pred             HHHHHHHHHHHHchHHHHHHHHHHHHhccc-----cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhh
Confidence            899999999999999999999999887543     35666778888999999998       6666666666655543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.57  E-value=0.019  Score=60.88  Aligned_cols=97  Identities=16%  Similarity=0.070  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCc-hhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCC-------chhHHHHHHH
Q 000742          354 FAWLKHCEYAKRKKRIASELCDK-GKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGN-------LEGQALAKVN  425 (1313)
Q Consensus       354 ~~~~~A~~~~~~a~~i~~~~~~~-~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~-------~~~~~~~~~~  425 (1313)
                      ..++.|++.|.-|+-.+...... ...+.++..+|++|..+|+.+....++++|++.+.....       ......+.+.
T Consensus        91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL  170 (214)
T PF09986_consen   91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL  170 (214)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence            34667777777777776655533 467899999999999999988888888888877764321       2345678899


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHH
Q 000742          426 MGNVLDSNGDWAGALDAFQEGYRIA  450 (1313)
Q Consensus       426 lg~~y~~~g~~~~A~~~~~kAl~i~  450 (1313)
                      +|.++.+.|++++|..+|.+.+...
T Consensus       171 igeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  171 IGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            9999999999999999999988754

>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.57  E-value=0.49  Score=53.34  Aligned_cols=197  Identities=12%  Similarity=0.012  Sum_probs=144.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000742          164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIE  243 (1313)
Q Consensus       164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~  243 (1313)
                      .-.+.....|.++....++..|...++++.-.+.+.   ....+...+...++.++.+.+..-.+..+.-.++....+..
T Consensus       271 ~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~---~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~  347 (482)
T KOG4322|consen  271 QSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKG---CNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEYS  347 (482)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---hhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhc
Confidence            346777889999999999999999999998887763   56777888999999999999999999999999999888877


Q ss_pred             hhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742          244 HCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNM  323 (1313)
Q Consensus       244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l  323 (1313)
                      .....+.+-..+|..+...|-.++|...+..|+....-.+...... .++.-..+.+.|..                   
T Consensus       348 ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~dra-ra~fvfanC~lA~a-------------------  407 (482)
T KOG4322|consen  348 LDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRA-RAIFVFANCTLAFA-------------------  407 (482)
T ss_pred             cchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcc-eeEEEEEeeeecch-------------------
Confidence            7777788888999999999999999999999987654433211110 00000000000000                   


Q ss_pred             HHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHH---HHH
Q 000742          324 IIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFN---KAI  400 (1313)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~---~A~  400 (1313)
                                               ......+.+.+.++.++|..+..+++.+....++++-++..|...|+-+   ++.
T Consensus       408 -------------------------~s~~~e~ld~~~~~L~~A~~~f~kL~~he~ildv~yf~A~~yn~lGd~~eRn~~A  462 (482)
T KOG4322|consen  408 -------------------------LSCANESLDGFPRYLDLAQSIFYKLGCHEKILDVTYFSAYQYNHLGDSPERNLLA  462 (482)
T ss_pred             -------------------------hhhhhhhHHhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHhhcCchHHHHHH
Confidence                                     0013455677778888888888888888888888888899998888754   445


Q ss_pred             HHHHHHHH
Q 000742          401 KWYTKSWE  408 (1313)
Q Consensus       401 ~~~~kal~  408 (1313)
                      ..|+|++.
T Consensus       463 slFrk~~~  470 (482)
T KOG4322|consen  463 SLFRKAWR  470 (482)
T ss_pred             HHHHHHHH
Confidence            55666554

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.57  E-value=2  Score=48.95  Aligned_cols=52  Identities=15%  Similarity=0.113  Sum_probs=43.5

Q ss_pred             HHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000742          387 GESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQE  445 (1313)
Q Consensus       387 g~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~k  445 (1313)
                      |..++.+|+|.++.-|-.=..+++|       ...+|..+|.+....++|++|..++.+
T Consensus       469 AEyLysqgey~kc~~ys~WL~~iaP-------S~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  469 AEYLYSQGEYHKCYLYSSWLTKIAP-------SPQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhCC-------cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            5566889999999988777776654       457899999999999999999998875

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.54  E-value=0.19  Score=57.97  Aligned_cols=216  Identities=15%  Similarity=0.083  Sum_probs=133.0

Q ss_pred             HHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhcc
Q 000742           73 SLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKE  152 (1313)
Q Consensus        73 ~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~  152 (1313)
                      .+-.-..+..+.++-++.. ++|+++.++..      .+|..+|.-          ......+|+.+|++|++..+..-.
T Consensus       173 ~IMq~AWRERnp~aRIkaA-~eALei~pdCA------dAYILLAEE----------eA~Ti~Eae~l~rqAvkAgE~~lg  235 (539)
T PF04184_consen  173 EIMQKAWRERNPQARIKAA-KEALEINPDCA------DAYILLAEE----------EASTIVEAEELLRQAVKAGEASLG  235 (539)
T ss_pred             HHHHHHHhcCCHHHHHHHH-HHHHHhhhhhh------HHHhhcccc----------cccCHHHHHHHHHHHHHHHHHhhc
Confidence            3344445667888889999 99999987664      344444432          225578999999999988776433


Q ss_pred             CCCCCcc--h--------hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHc
Q 000742          153 NPATSRS--S--------FLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMEL  222 (1313)
Q Consensus       153 ~~~~~~~--~--------~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~  222 (1313)
                      .......  .        ...-...+...+|.+..++|+.++|++.+...++..+.       .....++.++..++..+
T Consensus       236 ~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~-------~~~l~IrenLie~LLel  308 (539)
T PF04184_consen  236 KSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN-------LDNLNIRENLIEALLEL  308 (539)
T ss_pred             hhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc-------cchhhHHHHHHHHHHhc
Confidence            2110000  0        01113566778999999999999999999999887432       23456899999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH-hcC---------------HHHHHHHHHHHHHHHHHccChh
Q 000742          223 RMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYR-VQK---------------YDEAILCYQKALNLAQSMEDED  286 (1313)
Q Consensus       223 g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~kal~~~~~~~~~~  286 (1313)
                      +.|.++...+.+--++.     .+..+...+.-|.+-.+ .++               -..|++.+.+|++..|......
T Consensus       309 q~Yad~q~lL~kYdDi~-----lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL  383 (539)
T PF04184_consen  309 QAYADVQALLAKYDDIS-----LPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL  383 (539)
T ss_pred             CCHHHHHHHHHHhcccc-----CCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence            99999988877742221     12334444444443322 121               1346788888888877654321


Q ss_pred             HHH------HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 000742          287 ALA------SQIDQNIETVKKAIEVMDELKKEEQNLKK  318 (1313)
Q Consensus       287 ~~~------~~~~~~lg~~~~a~~~~~~a~~~~~~~~~  318 (1313)
                      ...      -.-+...|+ .+|+.+.--....++....
T Consensus       384 Le~K~LilPPehilkrGD-SEAiaYAf~hL~hWk~veG  420 (539)
T PF04184_consen  384 LEMKSLILPPEHILKRGD-SEAIAYAFFHLQHWKRVEG  420 (539)
T ss_pred             hccCCCCCChHHhcCCCc-HHHHHHHHHHHHHHhcCHh
Confidence            111      011223343 5566665555555554443

The molecular function of this protein is uncertain.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.50  E-value=0.42  Score=48.31  Aligned_cols=99  Identities=14%  Similarity=0.103  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000742          111 ACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLI  190 (1313)
Q Consensus       111 a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~  190 (1313)
                      +...++..+..-        +++++|+..++.++.....-            ...+.+-.++|.+...+|++++|+..+.
T Consensus        91 aaL~lAk~~ve~--------~~~d~A~aqL~~~l~~t~De------------~lk~l~~lRLArvq~q~~k~D~AL~~L~  150 (207)
T COG2976          91 AALELAKAEVEA--------NNLDKAEAQLKQALAQTKDE------------NLKALAALRLARVQLQQKKADAALKTLD  150 (207)
T ss_pred             HHHHHHHHHHhh--------ccHHHHHHHHHHHHccchhH------------HHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence            445566666654        99999999999888653221            1345678899999999999999998876


Q ss_pred             HHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000742          191 RGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIIC  239 (1313)
Q Consensus       191 ~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~  239 (1313)
                      ..          .++...+......|.++...|+-++|+..|++|++..
T Consensus       151 t~----------~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         151 TI----------KEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             cc----------ccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence            54          2244456667788999999999999999999999884

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.49  E-value=0.0057  Score=44.10  Aligned_cols=33  Identities=18%  Similarity=0.461  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhC
Q 000742          382 SFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIG  414 (1313)
Q Consensus       382 ~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~  414 (1313)
                      ++..||.+|..+|+|++|+.+|++++.+..+..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~   33 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPE   33 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence            467899999999999999999999998876543

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=96.43  E-value=0.038  Score=50.19  Aligned_cols=81  Identities=22%  Similarity=0.244  Sum_probs=67.7

Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHhhCCCC---CchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 000742           38 LKNRGEYVEALKWFRIDYDVSVKYLPEK---HLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQ  114 (1313)
Q Consensus        38 y~~~g~~~eAl~~~~~al~~~~~~~~~~---~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~  114 (1313)
                      ....|+|.+|++.+.+..+.........   ....+...+|.++...|++++|+..+ ++|++++++.+|....+.++..
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l-~eAi~~Are~~D~~~l~~al~~   86 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQAL-EEAIRLARENGDRRCLAYALSW   86 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHCCHHHHHHHHHH
Confidence            3578999999999999999987765544   34567888999999999999999999 9999999999998877766666


Q ss_pred             HHHHH
Q 000742          115 LGRTY  119 (1313)
Q Consensus       115 lg~~y  119 (1313)
                      +..+.
T Consensus        87 ~~~l~   91 (94)
T PF12862_consen   87 LANLL   91 (94)
T ss_pred             HHHHh
Confidence            65543

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.37  E-value=0.04  Score=58.36  Aligned_cols=101  Identities=20%  Similarity=0.235  Sum_probs=82.9

Q ss_pred             cCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-------chhhhHHHH
Q 000742          179 LDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKI-------EHCQGEAKG  251 (1313)
Q Consensus       179 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~-------~~~~~~~~~  251 (1313)
                      ...+++|++.|.-|+-.+.-.  ...+...+.++..+|-+|..+|+.+....++++|++.+.+.       ....+...+
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~~--~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l  167 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQIK--KEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL  167 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence            367899999999998876643  23455789999999999999999988888888888888765       113355788


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 000742          252 YINLGELHYRVQKYDEAILCYQKALNLAQS  281 (1313)
Q Consensus       252 ~~~la~~~~~~g~~~~A~~~~~kal~~~~~  281 (1313)
                      ++.+|.++.+.|++++|.++|.+.+.....
T Consensus       168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~~~  197 (214)
T PF09986_consen  168 LYLIGELNRRLGNYDEAKRWFSRVIGSKKA  197 (214)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence            999999999999999999999999876543

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.34  E-value=0.0051  Score=43.70  Aligned_cols=30  Identities=20%  Similarity=0.672  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Q 000742          381 DSFLVIGESYQKLRKFNKAIKWYTKSWEMY  410 (1313)
Q Consensus       381 ~~~~~lg~~y~~~g~~~~A~~~~~kal~l~  410 (1313)
                      .+|..+|.+|..+|++++|+.+|++|+++.
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~   31 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence            455556666666666666666666666554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=96.29  E-value=0.091  Score=52.40  Aligned_cols=90  Identities=19%  Similarity=0.207  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHh-chhhhHHHHHHHHHH
Q 000742          182 LEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMW---DKSREHIEQDIIICKKI-EHCQGEAKGYINLGE  257 (1313)
Q Consensus       182 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~---~~A~~~~~kal~~~~~~-~~~~~~~~~~~~la~  257 (1313)
                      |+.|.+.++.....         +|..+..+++.|.++..+.++   .++.+.++.|+..++.. .-.|....+++.+|.
T Consensus         7 FE~ark~aea~y~~---------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGn   77 (186)
T PF06552_consen    7 FEHARKKAEAAYAK---------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGN   77 (186)
T ss_dssp             HHHHHHHHHHHHHH----------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh---------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            45666666666655         455678888888888777544   34555555555444332 334488899999999


Q ss_pred             HHHHhcC-----------HHHHHHHHHHHHHHHH
Q 000742          258 LHYRVQK-----------YDEAILCYQKALNLAQ  280 (1313)
Q Consensus       258 ~~~~~g~-----------~~~A~~~~~kal~~~~  280 (1313)
                      +|...+.           |++|..+|++|....|
T Consensus        78 A~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P  111 (186)
T PF06552_consen   78 AYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDP  111 (186)
T ss_dssp             HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-T
T ss_pred             HHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCC
Confidence            9987654           4455555555555544

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.26  E-value=0.3  Score=53.11  Aligned_cols=110  Identities=15%  Similarity=0.130  Sum_probs=94.0

Q ss_pred             CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc
Q 000742          203 EDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSM  282 (1313)
Q Consensus       203 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~  282 (1313)
                      +.+...+.-|-.-|+-|+..++|..|+..|.++++.  +..+....+..|.+.|.+.+..|+|..|+.-..+|+.+.|..
T Consensus        75 ~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~--kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h  152 (390)
T KOG0551|consen   75 GEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK--KCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH  152 (390)
T ss_pred             CChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh--cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence            455567888888999999999999999999999875  456777889999999999999999999999999999999998


Q ss_pred             cChhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000742          283 EDEDALASQIDQNIETVKKAIEVMDELKKEEQ  314 (1313)
Q Consensus       283 ~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~  314 (1313)
                      ...+...+.++..+..+..|....++......
T Consensus       153 ~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~  184 (390)
T KOG0551|consen  153 LKAYIRGAKCLLELERFAEAVNWCEEGLQIDD  184 (390)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence            88777778888888888888877777654333

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.25  E-value=0.0056  Score=43.48  Aligned_cols=30  Identities=40%  Similarity=0.749  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 000742          251 GYINLGELHYRVQKYDEAILCYQKALNLAQ  280 (1313)
Q Consensus       251 ~~~~la~~~~~~g~~~~A~~~~~kal~~~~  280 (1313)
                      +|+++|.+|..+|++++|+.+|++|+++.|
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p   32 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence            444445555555555555555555544443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.23  E-value=2.1  Score=49.90  Aligned_cols=127  Identities=11%  Similarity=-0.015  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHH-HHHHh-----
Q 000742          340 NASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWE-MYKSI-----  413 (1313)
Q Consensus       340 ~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~-l~~~~-----  413 (1313)
                      +..+-..+...+..|.++.|..++.++.........  ..+.+....+.+....|+..+|+..++..++ .....     
T Consensus       146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~--~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~  223 (352)
T PF02259_consen  146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSES--LLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS  223 (352)
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccC--CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence            344667777888889999988888877654322221  1457778889999999999999999998887 22211     


Q ss_pred             ----------------------CCchhHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHHcCChhHHHHHHHh
Q 000742          414 ----------------------GNLEGQALAKVNMGNVLDSN------GDWAGALDAFQEGYRIAVEANLPSVQLSALEN  465 (1313)
Q Consensus       414 ----------------------~~~~~~~~~~~~lg~~y~~~------g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~~  465 (1313)
                                            ......+.++..+|......      ++++++...|++|.++...      ...++..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~------~~k~~~~  297 (352)
T PF02259_consen  224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS------WEKAWHS  297 (352)
T ss_pred             HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh------HHHHHHH
Confidence                                  11234567788888888888      8899999999999988543      3447788


Q ss_pred             hHHHHHHhh
Q 000742          466 MHYSHMIRF  474 (1313)
Q Consensus       466 L~~~~~~~~  474 (1313)
                      +|..+....
T Consensus       298 ~a~~~~~~~  306 (352)
T PF02259_consen  298 WALFNDKLL  306 (352)
T ss_pred             HHHHHHHHH
Confidence            887776543

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.21  E-value=0.031  Score=57.65  Aligned_cols=102  Identities=13%  Similarity=0.109  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHH
Q 000742          343 LDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALA  422 (1313)
Q Consensus       343 l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~  422 (1313)
                      +..-|..+.....|..|+..|-+++.+.      |..+..|.+.+.+|+++++++.+.....+|+++.+      ..+.+
T Consensus        13 lkE~gnk~f~~k~y~~ai~~y~raI~~n------P~~~~Y~tnralchlk~~~~~~v~~dcrralql~~------N~vk~   80 (284)
T KOG4642|consen   13 LKEQGNKCFIPKRYDDAIDCYSRAICIN------PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDP------NLVKA   80 (284)
T ss_pred             HHhccccccchhhhchHHHHHHHHHhcC------CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh------HHHHH
Confidence            3344555666777888888777776553      66668999999999999999999999999999865      67788


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh
Q 000742          423 KVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLP  456 (1313)
Q Consensus       423 ~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~  456 (1313)
                      ++.+|........|.+|+..+++|+.+.+....+
T Consensus        81 h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~  114 (284)
T KOG4642|consen   81 HYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFT  114 (284)
T ss_pred             HHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999999999999886544

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=96.16  E-value=0.0065  Score=40.77  Aligned_cols=27  Identities=33%  Similarity=0.399  Sum_probs=24.8

Q ss_pred             cccCceecCCCCCCCHHHHHHHHHHHh
Q 000742         1251 AKPLQLLDLSNNGFSTQAVKTLYCAWS 1277 (1313)
Q Consensus      1251 ~~~L~~LdLs~N~l~~~~~~~l~~~l~ 1277 (1313)
                      +++|++|||++|.|+++|+..|+.+++
T Consensus         1 n~~L~~LdL~~N~i~~~G~~~L~~~L~   27 (28)
T smart00368        1 NPSLRELDLSNNKLGDEGARALAEALK   27 (28)
T ss_pred             CCccCEEECCCCCCCHHHHHHHHHHhc
Confidence            368999999999999999999999875

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=96.08  E-value=1.4  Score=48.24  Aligned_cols=202  Identities=14%  Similarity=0.105  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCH------------HHHHHHHHHHHHHHHHHhcc---CCc--chh-
Q 000742           70 TCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDL------------VEQQRACTQLGRTYYEMFLR---SDD--DHY-  131 (1313)
Q Consensus        70 ~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~------------~~~a~a~~~lg~~y~~l~~~---~~~--~~~-  131 (1313)
                      +.+.+..+|+..|+..+|+..+ ++.+....+..+.            ...++-+..+|.........   ...  ..| 
T Consensus        12 i~~ki~rl~l~~~~~~~Av~q~-~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~   90 (247)
T PF11817_consen   12 IAFKICRLYLWLNQPTEAVRQF-RAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGF   90 (247)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHH-HHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcch
Confidence            3456778888999999999999 9988887655332            22233333444444322000   000  001 


Q ss_pred             hHHHHHHHHHHHHHHHHHhccCCC---CCc--------chh--hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhh
Q 000742          132 SIRNAKKYFKSAMKLAQTLKENPA---TSR--------SSF--LKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNE  198 (1313)
Q Consensus       132 ~~~~A~~~~~~Al~l~~~~~~~~~---~~~--------~~~--~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~  198 (1313)
                      -|..|-.+...--+.+..+...+.   ...        ..+  .|.....+............-...++.+.+|++.++.
T Consensus        91 yy~~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~  170 (247)
T PF11817_consen   91 YYQIAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKK  170 (247)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHH
Confidence            133344444433444444421110   000        000  1111122222222222334556678899999998887


Q ss_pred             hccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 000742          199 EEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKA  275 (1313)
Q Consensus       199 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ka  275 (1313)
                      .   +.......+...+|..|+..|+|++|.++|+.+...+.+.+-......++..+..++...|+.+..+.+.-+.
T Consensus       171 ~---~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL  244 (247)
T PF11817_consen  171 Y---GQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL  244 (247)
T ss_pred             h---ccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            4   5567778888899999999999999999999998888776666677888889999999999998877765443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.03  E-value=0.009  Score=42.35  Aligned_cols=30  Identities=23%  Similarity=0.678  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Q 000742          381 DSFLVIGESYQKLRKFNKAIKWYTKSWEMY  410 (1313)
Q Consensus       381 ~~~~~lg~~y~~~g~~~~A~~~~~kal~l~  410 (1313)
                      .++..+|.+|..+|++++|+.+|++++++.
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~   31 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence            455556666666666666666666666553

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.00  E-value=0.0051  Score=70.38  Aligned_cols=55  Identities=15%  Similarity=0.241  Sum_probs=28.6

Q ss_pred             hhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCC-CChhHHHHHHHHHhcCCCccEEEccCC
Q 000742         1026 AKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCG-LESTCIHKFTASVSLVHGILELNLGGN 1096 (1313)
Q Consensus      1026 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~N 1096 (1313)
                      ..+..++.|++++|.|...     + .   ..++|++|.+++|. ++.     ++..+  .++|+.|+|++|
T Consensus        49 ~~~~~l~~L~Is~c~L~sL-----P-~---LP~sLtsL~Lsnc~nLts-----LP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         49 EEARASGRLYIKDCDIESL-----P-V---LPNELTEITIENCNNLTT-----LPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             HHhcCCCEEEeCCCCCccc-----C-C---CCCCCcEEEccCCCCccc-----CCchh--hhhhhheEccCc
Confidence            3345677777777766432     1 1   11357777776654 221     11111  146677777766

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=95.92  E-value=0.011  Score=39.73  Aligned_cols=26  Identities=38%  Similarity=0.455  Sum_probs=19.7

Q ss_pred             CCcCEEEecCCCCChhHHHHHHHHHh
Q 000742          917 TRLGVLNLSGNRLTDACGSYLSTILK  942 (1313)
Q Consensus       917 ~~L~~L~Ls~n~l~~~~~~~l~~~l~  942 (1313)
                      ++|++|||++|.|++.|+..+++.|.
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~~~L~   27 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALAEALK   27 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHHHHhc
Confidence            56788888888888888777777654

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.82  E-value=0.012  Score=41.67  Aligned_cols=28  Identities=21%  Similarity=0.391  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000742          211 LHHNLGNVYMELRMWDKSREHIEQDIII  238 (1313)
Q Consensus       211 ~~~~lg~~y~~~g~~~~A~~~~~kal~~  238 (1313)
                      +++.+|.+|..+|++++|+++|++++++
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            4444444444444444444444444444

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.80  E-value=5.4  Score=46.52  Aligned_cols=118  Identities=16%  Similarity=0.144  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHh
Q 000742          164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDII-ICKKI  242 (1313)
Q Consensus       164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~-~~~~~  242 (1313)
                      ..+..+..++.+..+.|.++.|..++.++.......     ......+.+..+.+....|+..+|+..++..+. .....
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~-----~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~  218 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSS-----ESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKN  218 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcc-----cCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc
Confidence            677899999999999999999999999988764321     111456778889999999999999999998888 22211


Q ss_pred             ---------------------------chhhhHHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHHHHHccChh
Q 000742          243 ---------------------------EHCQGEAKGYINLGELHYRV------QKYDEAILCYQKALNLAQSMEDED  286 (1313)
Q Consensus       243 ---------------------------~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~kal~~~~~~~~~~  286 (1313)
                                                 ......+.++..+|......      +.+++++..|++|.++.+.....+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~  295 (352)
T PF02259_consen  219 IDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAW  295 (352)
T ss_pred             cccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHH
Confidence                                       12245577888888888888      889999999999999988665433

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PRK15386 type III secretion protein GogB; Provisional

Probab=95.76  E-value=0.0078  Score=68.93  Aligned_cols=32  Identities=25%  Similarity=0.333  Sum_probs=17.5

Q ss_pred             CCCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecC
Q 000742          916 FTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENC  955 (1313)
Q Consensus       916 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n  955 (1313)
                      +.+++.|++++|.|+.     ++.   -..+|++|.+++|
T Consensus        51 ~~~l~~L~Is~c~L~s-----LP~---LP~sLtsL~Lsnc   82 (426)
T PRK15386         51 ARASGRLYIKDCDIES-----LPV---LPNELTEITIENC   82 (426)
T ss_pred             hcCCCEEEeCCCCCcc-----cCC---CCCCCcEEEccCC
Confidence            3666666666665553     221   1224666666664

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=95.75  E-value=1.6  Score=59.70  Aligned_cols=89  Identities=8%  Similarity=-0.044  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH
Q 000742          182 LEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYR  261 (1313)
Q Consensus       182 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~  261 (1313)
                      ..+-+-.+++++-.....  .+.....+.+|...|++....|+++.|..++-+|.+.        ..+.++...|...+.
T Consensus      1645 ~~epILa~RRs~l~~~~~--~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~--------r~~~i~~E~AK~lW~ 1714 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMR--SNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES--------RLPEIVLERAKLLWQ 1714 (2382)
T ss_pred             HHhHHHHHHHHHHHHhcc--ccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc--------ccchHHHHHHHHHHh
Confidence            455555566655443221  1346778999999999999999999999999888776        467899999999999


Q ss_pred             hcCHHHHHHHHHHHHHHHH
Q 000742          262 VQKYDEAILCYQKALNLAQ  280 (1313)
Q Consensus       262 ~g~~~~A~~~~~kal~~~~  280 (1313)
                      .|+...|+.++++.++...
T Consensus      1715 ~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1715 TGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred             hccHHHHHHHHHHHHHhhc
Confidence            9999999999999996654

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=95.75  E-value=0.019  Score=40.73  Aligned_cols=31  Identities=19%  Similarity=0.653  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Q 000742          381 DSFLVIGESYQKLRKFNKAIKWYTKSWEMYK  411 (1313)
Q Consensus       381 ~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~  411 (1313)
                      .++..+|.+|..+|++++|+++|++++++.+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            4555566666666666666666666665543

...

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=95.67  E-value=1.3  Score=52.12  Aligned_cols=184  Identities=15%  Similarity=0.116  Sum_probs=101.4

Q ss_pred             HHHHHHHHHccChHHHHHHHHHH------HHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHH
Q 000742           72 QSLGEVYLRLEHFKDALIYQVKK------HLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMK  145 (1313)
Q Consensus        72 ~~lg~~y~~~g~~~~A~~~~~~k------al~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~  145 (1313)
                      ..+|.++...|+|.+|.+.| .+      |++++.+..        .+..+.-|...        |.-++-....++-.+
T Consensus       636 iLlA~~~Ay~gKF~EAAklF-k~~G~enRAlEmyTDlR--------MFD~aQE~~~~--------g~~~eKKmL~RKRA~  698 (1081)
T KOG1538|consen  636 LLLADVFAYQGKFHEAAKLF-KRSGHENRALEMYTDLR--------MFDYAQEFLGS--------GDPKEKKMLIRKRAD  698 (1081)
T ss_pred             HHHHHHHHhhhhHHHHHHHH-HHcCchhhHHHHHHHHH--------HHHHHHHHhhc--------CChHHHHHHHHHHHH
Confidence            35788888899999998888 43      444433321        23334444432        444455555555555


Q ss_pred             HHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHH------HHHHHhHhhhhccCCCchHHHHHHHHHHHHH
Q 000742          146 LAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKF------LIRGLEICNEEEVSEDDDGRSRLHHNLGNVY  219 (1313)
Q Consensus       146 l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~------~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y  219 (1313)
                      .+....++.                .-|.++...|+.++|+..      .+-++++..++     +...-..+..++..+
T Consensus       699 WAr~~kePk----------------aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl-----d~~ere~l~~~a~yl  757 (1081)
T KOG1538|consen  699 WARNIKEPK----------------AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKL-----DKAEREPLLLCATYL  757 (1081)
T ss_pred             HhhhcCCcH----------------HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhc-----chhhhhHHHHHHHHH
Confidence            555544432                235566777888888765      33445554443     222333444555555


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHH
Q 000742          220 MELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETV  299 (1313)
Q Consensus       220 ~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~  299 (1313)
                      ..+..+.-|-+.|++.=..              ..+-+++...++|.+|....++--+..+   +.+...++.+....++
T Consensus       758 k~l~~~gLAaeIF~k~gD~--------------ksiVqlHve~~~W~eAFalAe~hPe~~~---dVy~pyaqwLAE~DrF  820 (1081)
T KOG1538|consen  758 KKLDSPGLAAEIFLKMGDL--------------KSLVQLHVETQRWDEAFALAEKHPEFKD---DVYMPYAQWLAENDRF  820 (1081)
T ss_pred             hhccccchHHHHHHHhccH--------------HHHhhheeecccchHhHhhhhhCccccc---cccchHHHHhhhhhhH
Confidence            5555555555555443222              2244567788899998877765444443   2233344445555555


Q ss_pred             HHHHHHHHHHH
Q 000742          300 KKAIEVMDELK  310 (1313)
Q Consensus       300 ~~a~~~~~~a~  310 (1313)
                      .+|.+.|.++.
T Consensus       821 eEAqkAfhkAG  831 (1081)
T KOG1538|consen  821 EEAQKAFHKAG  831 (1081)
T ss_pred             HHHHHHHHHhc
Confidence            56655555543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.63  E-value=0.018  Score=43.78  Aligned_cols=42  Identities=12%  Similarity=0.219  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHH
Q 000742          210 RLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGE  257 (1313)
Q Consensus       210 ~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~  257 (1313)
                      .++..+|.+|...|++++|++.|+++++..|      +...++..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P------~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDP------DDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc------CCHHHHHHhhh
Confidence            3567788888888888888888888888766      56666666654

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.61  E-value=0.016  Score=44.05  Aligned_cols=42  Identities=12%  Similarity=0.260  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Q 000742          381 DSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGN  428 (1313)
Q Consensus       381 ~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~  428 (1313)
                      .++..+|.+|..+|++++|+..|+++++..|      +...++..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P------~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDP------DDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc------CCHHHHHHhhh
Confidence            4677889999999999999999999987755      45566666664

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=95.61  E-value=0.024  Score=40.19  Aligned_cols=31  Identities=26%  Similarity=0.500  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742          421 LAKVNMGNVLDSNGDWAGALDAFQEGYRIAV  451 (1313)
Q Consensus       421 ~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~  451 (1313)
                      .+|+.+|.+|..+|++++|+.+|++++++.+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            5689999999999999999999999999864

...

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.58  E-value=0.14  Score=52.98  Aligned_cols=114  Identities=10%  Similarity=0.068  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhcc--CCCCCcc-hhhHHHHHHHHHHHHHHHHcCCHHHHH
Q 000742          110 RACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKE--NPATSRS-SFLKEYIDAHNNIGMLQMELDNLEEAK  186 (1313)
Q Consensus       110 ~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~--~~~~~~~-~~~p~~~~~~~~la~~y~~~g~~~~A~  186 (1313)
                      .++..-|+-++..        |+|.+|...|+.|+...+.+.-  .+....+ .........+.|++.++...|+|-+++
T Consensus       179 ~~l~q~GN~lfk~--------~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevl  250 (329)
T KOG0545|consen  179 PVLHQEGNRLFKL--------GRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVL  250 (329)
T ss_pred             HHHHHhhhhhhhh--------ccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHH
Confidence            4566778777777        9999999999999998887543  3332221 122344567889999999999999999


Q ss_pred             HHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742          187 KFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK  240 (1313)
Q Consensus       187 ~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~  240 (1313)
                      +.....+..         .+....+|+..|.++...=+.++|...|.+++++.+
T Consensus       251 eh~seiL~~---------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp  295 (329)
T KOG0545|consen  251 EHCSEILRH---------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP  295 (329)
T ss_pred             HHHHHHHhc---------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence            999999887         445788999999999999999999999999999877

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.57  E-value=0.34  Score=48.30  Aligned_cols=109  Identities=13%  Similarity=0.127  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCC--C-----------chHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000742          167 DAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSE--D-----------DDGRSRLHHNLGNVYMELRMWDKSREHIE  233 (1313)
Q Consensus       167 ~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~--~-----------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~  233 (1313)
                      ..+...|......++.+.++..+++++.++..--..+  .           ......+...++..+...|++++|+..++
T Consensus         7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~   86 (146)
T PF03704_consen    7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ   86 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            3344445555667889999999999999875421101  0           11234456677888889999999999999


Q ss_pred             HHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 000742          234 QDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQS  281 (1313)
Q Consensus       234 kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~  281 (1313)
                      +++...|      ..-.++..+-.+|...|++.+|++.|+++.....+
T Consensus        87 ~~l~~dP------~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~  128 (146)
T PF03704_consen   87 RALALDP------YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLRE  128 (146)
T ss_dssp             HHHHHST------T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCC------CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence            9999876      77888999999999999999999999999877654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=95.56  E-value=0.4  Score=54.39  Aligned_cols=159  Identities=18%  Similarity=0.173  Sum_probs=114.0

Q ss_pred             HHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCC
Q 000742           76 EVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPA  155 (1313)
Q Consensus        76 ~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~  155 (1313)
                      ......+++..|...+ .++-.    ..+.    .+...++..|..-    .+...+..+|..+|+.+.+.         
T Consensus        49 ~~~~~~~~~~~a~~~~-~~a~~----~~~~----~a~~~l~~~y~~g----~gv~~~~~~A~~~~~~~a~~---------  106 (292)
T COG0790          49 AGSAYPPDYAKALKSY-EKAAE----LGDA----AALALLGQMYGAG----KGVSRDKTKAADWYRCAAAD---------  106 (292)
T ss_pred             ccccccccHHHHHHHH-HHhhh----cCCh----HHHHHHHHHHHhc----cCccccHHHHHHHHHHHhhc---------
Confidence            3344567888888888 66655    1221    5677888888643    33446688888888855544         


Q ss_pred             CCcchhhHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcC-------C
Q 000742          156 TSRSSFLKEYIDAHNNIGMLQME----LDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELR-------M  224 (1313)
Q Consensus       156 ~~~~~~~p~~~~~~~~la~~y~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g-------~  224 (1313)
                              ..+.+.+.+|.+|..    ..++.+|..+|.+|.+.       ++.+. ..+.+.+|..|..-.       +
T Consensus       107 --------g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-------g~~~a-~~~~~~l~~~~~~g~~~~~~~~~  170 (292)
T COG0790         107 --------GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL-------GNVEA-ALAMYRLGLAYLSGLQALAVAYD  170 (292)
T ss_pred             --------ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-------CChhH-HHHHHHHHHHHHcChhhhcccHH
Confidence                    446788889999987    45999999999999886       22221 455778888887752       2


Q ss_pred             HHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHH
Q 000742          225 WDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYR----VQKYDEAILCYQKALNLAQ  280 (1313)
Q Consensus       225 ~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~kal~~~~  280 (1313)
                      ...|...|.++...        ....+...+|.+|..    ..++++|..+|++|-+...
T Consensus       171 ~~~A~~~~~~aa~~--------~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~  222 (292)
T COG0790         171 DKKALYLYRKAAEL--------GNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD  222 (292)
T ss_pred             HHhHHHHHHHHHHh--------cCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence            33688888777766        467888999988865    4589999999999987654

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=95.52  E-value=0.011  Score=41.78  Aligned_cols=34  Identities=32%  Similarity=0.522  Sum_probs=30.6

Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHH
Q 000742           14 AYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALK   49 (1313)
Q Consensus        14 ~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~   49 (1313)
                      +|++|++.+|....+  |+++|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a--~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEA--YNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHH--HHHHHHHHHHCcCHHhhcC
Confidence            378999999998888  9999999999999999963

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=95.50  E-value=4  Score=52.80  Aligned_cols=112  Identities=15%  Similarity=0.080  Sum_probs=85.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHH
Q 000742          173 GMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGY  252 (1313)
Q Consensus       173 a~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~  252 (1313)
                      ..++...+.|++|+..|++.-.-++.      ...-..+.+.+|.+...+-.-..--+.|.+|+..+....+.+..+.-|
T Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  555 (932)
T PRK13184        482 PDAFLAEKLYDQALIFYRRIRESFPG------RKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEY  555 (932)
T ss_pred             cHHHHhhHHHHHHHHHHHHHhhcCCC------cccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHH
Confidence            45566667788888888887666543      233456777888877765444333478889999888888888888999


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHH
Q 000742          253 INLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALAS  290 (1313)
Q Consensus       253 ~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~  290 (1313)
                      ...|.+|.++|+|++-+++|.-|++..+..+.......
T Consensus       556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (932)
T PRK13184        556 LGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRD  593 (932)
T ss_pred             HhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHH
Confidence            99999999999999999999999999988776544433

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.44  E-value=2  Score=49.26  Aligned_cols=213  Identities=15%  Similarity=0.096  Sum_probs=126.8

Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHhhCCCCC--chhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 000742           36 DILKNRGEYVEALKWFRIDYDVSVKYLPEKH--LLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACT  113 (1313)
Q Consensus        36 ~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~--~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~  113 (1313)
                      .+-.....+..|.+...+++.......+.+.  ...+..++=.+|....+|+.-+... +..-.+ |... ........+
T Consensus       107 dirkare~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lv-e~l~~~-p~~~-~~~~~~i~~  183 (374)
T PF13281_consen  107 DIRKARERYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLV-ETLEAL-PTCD-VANQHNIKF  183 (374)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHH-HHhhcc-Cccc-hhcchHHHH
Confidence            3333345555555666666665555545443  2456667777888889998877776 444333 2211 111223344


Q ss_pred             HHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHH---------cCCHHH
Q 000742          114 QLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQME---------LDNLEE  184 (1313)
Q Consensus       114 ~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~---------~g~~~~  184 (1313)
                      ..|.++...     +..|+.++|+..+..++.-..   .           ..++++..+|.+|..         ...+++
T Consensus       184 ~yafALnRr-----n~~gdre~Al~il~~~l~~~~---~-----------~~~d~~gL~GRIyKD~~~~s~~~d~~~ldk  244 (374)
T PF13281_consen  184 QYAFALNRR-----NKPGDREKALQILLPVLESDE---N-----------PDPDTLGLLGRIYKDLFLESNFTDRESLDK  244 (374)
T ss_pred             HHHHHHhhc-----ccCCCHHHHHHHHHHHHhccC---C-----------CChHHHHHHHHHHHHHHHHcCccchHHHHH
Confidence            555555542     123889999998888743311   1           225678888888754         234788


Q ss_pred             HHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHH-----hchhhhHHHHHHHHHHH
Q 000742          185 AKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDI-IICKK-----IEHCQGEAKGYINLGEL  258 (1313)
Q Consensus       185 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal-~~~~~-----~~~~~~~~~~~~~la~~  258 (1313)
                      |+.+|.++.++-+.          ...-.|++.+....|...+...-.++.. .+...     ..........+-.++.+
T Consensus       245 Ai~~Y~kgFe~~~~----------~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea  314 (374)
T PF13281_consen  245 AIEWYRKGFEIEPD----------YYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEA  314 (374)
T ss_pred             HHHHHHHHHcCCcc----------ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHH
Confidence            99999998887322          2233566666666665444433333332 22211     11223444556677788


Q ss_pred             HHHhcCHHHHHHHHHHHHHHHH
Q 000742          259 HYRVQKYDEAILCYQKALNLAQ  280 (1313)
Q Consensus       259 ~~~~g~~~~A~~~~~kal~~~~  280 (1313)
                      ..-.|++++|++++++++++.+
T Consensus       315 ~vL~~d~~ka~~a~e~~~~l~~  336 (374)
T PF13281_consen  315 SVLAGDYEKAIQAAEKAFKLKP  336 (374)
T ss_pred             HHHcCCHHHHHHHHHHHhhcCC
Confidence            8889999999999999998854

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.37  E-value=0.0089  Score=60.27  Aligned_cols=84  Identities=21%  Similarity=0.184  Sum_probs=64.6

Q ss_pred             CcccEEEccCCCCChhHHHHHHHHHhcCCCccEEEccCCC-CChHHHHHHHHHhcCCCCceeEEEeecCC-CCHHHHHHH
Q 000742         1058 QESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNP-IMKEGANALASLLMNPQCCLKVLVLSKCQ-LGLAGVLQL 1135 (1313)
Q Consensus      1058 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-i~~~g~~~l 1135 (1313)
                      ..++.+|-+++.|..+|+..+    ..++.|+.|.+.+|. +.|.++..++....    +|+.|+|++|. ||+.|+.. 
T Consensus       101 ~~IeaVDAsds~I~~eGle~L----~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~----~L~~L~lsgC~rIT~~GL~~-  171 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHL----RDLRSIKSLSLANCKYFDDWCLERLGGLAP----SLQDLDLSGCPRITDGGLAC-  171 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHH----hccchhhhheeccccchhhHHHHHhccccc----chheeeccCCCeechhHHHH-
Confidence            358888888888888887665    477888888888887 88888888877333    59999999884 88887644 


Q ss_pred             HHHhhcCCCccEEEccCC
Q 000742         1136 IKALSENDTLEELNLADN 1153 (1313)
Q Consensus      1136 ~~~l~~~~~L~~L~Ls~N 1153 (1313)
                         |..+++|+.|.|.+=
T Consensus       172 ---L~~lknLr~L~l~~l  186 (221)
T KOG3864|consen  172 ---LLKLKNLRRLHLYDL  186 (221)
T ss_pred             ---HHHhhhhHHHHhcCc
Confidence               566778888887653

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=95.37  E-value=0.3  Score=56.67  Aligned_cols=90  Identities=13%  Similarity=0.131  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Q 000742          350 SSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNV  429 (1313)
Q Consensus       350 ~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~  429 (1313)
                      .+..|+...|...++.|......-.     -....++|.+..+-|-...|-.++.+++.+.      ..+...++.+|.+
T Consensus       617 wr~~gn~~~a~~cl~~a~~~~p~~~-----~v~~v~la~~~~~~~~~~da~~~l~q~l~~~------~sepl~~~~~g~~  685 (886)
T KOG4507|consen  617 WRAVGNSTFAIACLQRALNLAPLQQ-----DVPLVNLANLLIHYGLHLDATKLLLQALAIN------SSEPLTFLSLGNA  685 (886)
T ss_pred             eeecCCcHHHHHHHHHHhccChhhh-----cccHHHHHHHHHHhhhhccHHHHHHHHHhhc------ccCchHHHhcchh
Confidence            3566777788888888876544322     2456789999999999999999999999875      2456678899999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHH
Q 000742          430 LDSNGDWAGALDAFQEGYRIA  450 (1313)
Q Consensus       430 y~~~g~~~~A~~~~~kAl~i~  450 (1313)
                      |....+.++|++.|++|+...
T Consensus       686 ~l~l~~i~~a~~~~~~a~~~~  706 (886)
T KOG4507|consen  686 YLALKNISGALEAFRQALKLT  706 (886)
T ss_pred             HHHHhhhHHHHHHHHHHHhcC
Confidence            999999999999999999863

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=95.29  E-value=0.012  Score=37.94  Aligned_cols=24  Identities=33%  Similarity=0.412  Sum_probs=19.2

Q ss_pred             cccCceecCCCCCCCHHHHHHHHH
Q 000742         1251 AKPLQLLDLSNNGFSTQAVKTLYC 1274 (1313)
Q Consensus      1251 ~~~L~~LdLs~N~l~~~~~~~l~~ 1274 (1313)
                      +++|+.|+|++|.|+++++..|++
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l~~   24 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASALAN   24 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHhCC
Confidence            578999999999999999999874

...

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.28  E-value=0.27  Score=49.10  Aligned_cols=69  Identities=19%  Similarity=0.148  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000742          164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKK  241 (1313)
Q Consensus       164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~  241 (1313)
                      .+..+...++..+...|++++|+..+++++..         +|..-.+|..+-.+|...|++.+|+..|++......+
T Consensus        60 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~---------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~  128 (146)
T PF03704_consen   60 LYLDALERLAEALLEAGDYEEALRLLQRALAL---------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLRE  128 (146)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence            34567778888899999999999999999998         4556778999999999999999999999999888763

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.26  E-value=0.0048  Score=64.91  Aligned_cols=12  Identities=25%  Similarity=0.224  Sum_probs=6.5

Q ss_pred             CCCccEEEeCCC
Q 000742          972 ESTLAQLCIGYN  983 (1313)
Q Consensus       972 ~~~L~~L~Ls~n  983 (1313)
                      +++|+.|.+|.|
T Consensus        64 Lp~LkkL~lsdn   75 (260)
T KOG2739|consen   64 LPKLKKLELSDN   75 (260)
T ss_pred             cchhhhhcccCC
Confidence            445555555555

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.26  E-value=5.9  Score=43.44  Aligned_cols=149  Identities=13%  Similarity=-0.018  Sum_probs=108.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHH
Q 000742          131 YSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSR  210 (1313)
Q Consensus       131 ~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  210 (1313)
                      |++.+|....++.++-               .|....++..--.+++..|+.+.-...+++.+....     .+.|-...
T Consensus       117 g~~h~a~~~wdklL~d---------------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn-----~dlp~~sY  176 (491)
T KOG2610|consen  117 GKHHEAAIEWDKLLDD---------------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWN-----ADLPCYSY  176 (491)
T ss_pred             ccccHHHHHHHHHHHh---------------CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccC-----CCCcHHHH
Confidence            6666666666666554               334455666677788888999888888888766522     34566778


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHH-
Q 000742          211 LHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALA-  289 (1313)
Q Consensus       211 ~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~-  289 (1313)
                      +.-.++......|-|++|.+..++++++.+      ....+...++.++...++++++.++..+.-...+.   .+... 
T Consensus       177 v~GmyaFgL~E~g~y~dAEk~A~ralqiN~------~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~---s~mlas  247 (491)
T KOG2610|consen  177 VHGMYAFGLEECGIYDDAEKQADRALQINR------FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ---SWMLAS  247 (491)
T ss_pred             HHHHHHhhHHHhccchhHHHHHHhhccCCC------cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh---hhHHHh
Confidence            888889999999999999999999999976      67778888999999999999999998876554432   11111 


Q ss_pred             ------HHHHHhHHHHHHHHHHHHH
Q 000742          290 ------SQIDQNIETVKKAIEVMDE  308 (1313)
Q Consensus       290 ------~~~~~~lg~~~~a~~~~~~  308 (1313)
                            +..+..-+.+..|++.|+.
T Consensus       248 HNyWH~Al~~iE~aeye~aleIyD~  272 (491)
T KOG2610|consen  248 HNYWHTALFHIEGAEYEKALEIYDR  272 (491)
T ss_pred             hhhHHHHHhhhcccchhHHHHHHHH
Confidence                  2234444566666666654

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.19  E-value=0.91  Score=51.88  Aligned_cols=190  Identities=14%  Similarity=0.047  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHH---ccChHHHHHHHHHHHHHHHHHhc
Q 000742           27 EARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLR---LEHFKDALIYQVKKHLELAKDAS  103 (1313)
Q Consensus        27 ~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~---~g~~~~A~~~~~~kal~l~~~~~  103 (1313)
                      .+.....+=..|....+|+.-++..+..-.+- .. +......+.+..|.++.+   .|+.++|+..+ ..++.-.... 
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p-~~-~~~~~~~i~~~yafALnRrn~~gdre~Al~il-~~~l~~~~~~-  215 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALP-TC-DVANQHNIKFQYAFALNRRNKPGDREKALQIL-LPVLESDENP-  215 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccC-cc-chhcchHHHHHHHHHHhhcccCCCHHHHHHHH-HHHHhccCCC-
Confidence            34455666667888888887777766543331 00 112235566788888888   89999999999 8765543222 


Q ss_pred             CHHHHHHHHHHHHHHHHHHhccC-CcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCH
Q 000742          104 DLVEQQRACTQLGRTYYEMFLRS-DDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNL  182 (1313)
Q Consensus       104 ~~~~~a~a~~~lg~~y~~l~~~~-~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~  182 (1313)
                      +    ...+..+|++|..++..+ ..+....++|+..|.++.++-..                ...=.|++.++...|.-
T Consensus       216 ~----~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~----------------~Y~GIN~AtLL~~~g~~  275 (374)
T PF13281_consen  216 D----PDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD----------------YYSGINAATLLMLAGHD  275 (374)
T ss_pred             C----hHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc----------------ccchHHHHHHHHHcCCc
Confidence            1    246889999999887653 23456688999999999877311                11223455555555553


Q ss_pred             HHHHHHHHHHH-hHhhhh--ccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742          183 EEAKKFLIRGL-EICNEE--EVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK  240 (1313)
Q Consensus       183 ~~A~~~~~~al-~~~~~~--~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~  240 (1313)
                      .+.....++.. .+..-.  ............+-.++.+..-.|++++|++.++++++..+
T Consensus       276 ~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~  336 (374)
T PF13281_consen  276 FETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP  336 (374)
T ss_pred             ccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence            33332223322 111100  00112223445566778888889999999999999998744

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=95.17  E-value=3.8  Score=44.90  Aligned_cols=90  Identities=16%  Similarity=0.055  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcC
Q 000742          355 AWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNG  434 (1313)
Q Consensus       355 ~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g  434 (1313)
                      .-...++.+++|...++..+.......+...+|..|+..|+|++|+++|+.+...+..-+=..-...++..+..|+...|
T Consensus       153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~  232 (247)
T PF11817_consen  153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG  232 (247)
T ss_pred             hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence            33456777788888887777777778888889999999999999999999997776655545555667778888888888


Q ss_pred             CHHHHHHHHH
Q 000742          435 DWAGALDAFQ  444 (1313)
Q Consensus       435 ~~~~A~~~~~  444 (1313)
                      +.+..+.+.-
T Consensus       233 ~~~~~l~~~l  242 (247)
T PF11817_consen  233 DVEDYLTTSL  242 (247)
T ss_pred             CHHHHHHHHH
Confidence            8887766543

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=95.15  E-value=0.15  Score=57.03  Aligned_cols=136  Identities=18%  Similarity=0.135  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHH-cCCHHHHHHHH
Q 000742          111 ACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQME-LDNLEEAKKFL  189 (1313)
Q Consensus       111 a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~-~g~~~~A~~~~  189 (1313)
                      +|..+.+.....        +..+.|...|.+|.+-    ..           ....+|...|.+.+. .++.+.|...|
T Consensus         3 v~i~~m~~~~r~--------~g~~~aR~vF~~a~~~----~~-----------~~~~vy~~~A~~E~~~~~d~~~A~~If   59 (280)
T PF05843_consen    3 VWIQYMRFMRRT--------EGIEAARKVFKRARKD----KR-----------CTYHVYVAYALMEYYCNKDPKRARKIF   59 (280)
T ss_dssp             HHHHHHHHHHHH--------HHHHHHHHHHHHHHCC----CC-----------S-THHHHHHHHHHHHTCS-HHHHHHHH
T ss_pred             HHHHHHHHHHHh--------CChHHHHHHHHHHHcC----CC-----------CCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            345555555554        6688888888888621    11           124678888888666 56666699999


Q ss_pred             HHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHH
Q 000742          190 IRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAI  269 (1313)
Q Consensus       190 ~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  269 (1313)
                      +.+++.+..         ....|......+...++.+.|...|++++...+.   .......|......-...|+.+...
T Consensus        60 e~glk~f~~---------~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~---~~~~~~iw~~~i~fE~~~Gdl~~v~  127 (280)
T PF05843_consen   60 ERGLKKFPS---------DPDFWLEYLDFLIKLNDINNARALFERAISSLPK---EKQSKKIWKKFIEFESKYGDLESVR  127 (280)
T ss_dssp             HHHHHHHTT----------HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSC---HHHCHHHHHHHHHHHHHHS-HHHHH
T ss_pred             HHHHHHCCC---------CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCc---hhHHHHHHHHHHHHHHHcCCHHHHH
Confidence            999998765         3455666667888999999999999999887431   1114457777777788889999999


Q ss_pred             HHHHHHHHHHHH
Q 000742          270 LCYQKALNLAQS  281 (1313)
Q Consensus       270 ~~~~kal~~~~~  281 (1313)
                      ..++++.+..+.
T Consensus       128 ~v~~R~~~~~~~  139 (280)
T PF05843_consen  128 KVEKRAEELFPE  139 (280)
T ss_dssp             HHHHHHHHHTTT
T ss_pred             HHHHHHHHHhhh
Confidence            998888887765

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.09  E-value=0.015  Score=58.62  Aligned_cols=20  Identities=20%  Similarity=0.287  Sum_probs=9.1

Q ss_pred             cCEEEecCCCCCHHHHHHHH
Q 000742          860 VALLDLSHNLLGNGTMEKLQ  879 (1313)
Q Consensus       860 L~~L~Ls~n~l~~~~~~~L~  879 (1313)
                      ++.+|-++..|..+|+..|.
T Consensus       103 IeaVDAsds~I~~eGle~L~  122 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLR  122 (221)
T ss_pred             EEEEecCCchHHHHHHHHHh
Confidence            44444444444444444443

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=95.01  E-value=0.023  Score=64.91  Aligned_cols=101  Identities=15%  Similarity=0.166  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhH
Q 000742          169 HNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGE  248 (1313)
Q Consensus       169 ~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~  248 (1313)
                      .-.-|..++.-++|+.|+..|.+|+++         ++..+..+.+.+.+|.+.+++..|+..+.+|++..+      ..
T Consensus         7 ~k~ean~~l~~~~fd~avdlysKaI~l---------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP------~~   71 (476)
T KOG0376|consen    7 LKNEANEALKDKVFDVAVDLYSKAIEL---------DPNCAIYFANRALAHLKVESFGGALHDALKAIELDP------TY   71 (476)
T ss_pred             hhhHHhhhcccchHHHHHHHHHHHHhc---------CCcceeeechhhhhheeechhhhHHHHHHhhhhcCc------hh
Confidence            334455566779999999999999998         455677888999999999999999999999999976      88


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccC
Q 000742          249 AKGYINLGELHYRVQKYDEAILCYQKALNLAQSMED  284 (1313)
Q Consensus       249 ~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~  284 (1313)
                      ..+|+..|.++...+++.+|...|++...+.|...+
T Consensus        72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~  107 (476)
T KOG0376|consen   72 IKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPD  107 (476)
T ss_pred             hheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHH
Confidence            999999999999999999999999999999886554

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=94.89  E-value=18  Score=47.08  Aligned_cols=101  Identities=14%  Similarity=0.039  Sum_probs=78.3

Q ss_pred             hhhHHHHHHHHHHHHHhcCcHHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742            5 EMQMSEAKRAYRSAKEEGNRQEEA-RWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH   83 (1313)
Q Consensus         5 ~~~~~~A~~~l~~a~~~~~~~~~a-~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~   83 (1313)
                      .+.|+.|+..|++....-|...+. ++.+.+|.....+-.-..--+.|.+|+....+..+.+..+--|...|.+|.++|+
T Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  567 (932)
T PRK13184        488 EKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALVYQRLGE  567 (932)
T ss_pred             hHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHHHHHhhh
Confidence            467999999999999887765443 4577888877655333333367777777777776777777778889999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCHH
Q 000742           84 FKDALIYQVKKHLELAKDASDLV  106 (1313)
Q Consensus        84 ~~~A~~~~~~kal~l~~~~~~~~  106 (1313)
                      |++-++.+ ..|++.+++.+...
T Consensus       568 ~~~~~~~~-~~~~~~~~~~~~~~  589 (932)
T PRK13184        568 YNEEIKSL-LLALKRYSQHPEIS  589 (932)
T ss_pred             HHHHHHHH-HHHHHhcCCCCccH
Confidence            99999999 99999988877543

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=94.86  E-value=0.018  Score=40.76  Aligned_cols=32  Identities=31%  Similarity=0.455  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHH
Q 000742          232 IEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAI  269 (1313)
Q Consensus       232 ~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  269 (1313)
                      |++|+++.|      ..+.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P------~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNP------NNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCC------CCHHHHHHHHHHHHHCcCHHhhc
Confidence            678888866      88889999999999999999886

>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]

Probab=94.57  E-value=0.083  Score=57.57  Aligned_cols=95  Identities=18%  Similarity=0.256  Sum_probs=53.6

Q ss_pred             CCCcccEEEccCCC-CChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHH
Q 000742         1056 RAQESVKLDLSYCG-LESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQ 1134 (1313)
Q Consensus      1056 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~ 1134 (1313)
                      +-+.++..+|+++. |...-...+..++..++..+...|.+-..++..+.+++.++..+. +|++|++++|-|++.|+..
T Consensus       196 nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~-sl~slnvesnFItg~gi~a  274 (353)
T KOG3735|consen  196 NDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENK-SLTSLNVESNFITGLGIMA  274 (353)
T ss_pred             CCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcc-hhhheeccccccccHHHHH
Confidence            33455555555544 444444455555555555666666555565555556666555422 4666666666666666666


Q ss_pred             HHHHhhcCCCccEEEcc
Q 000742         1135 LIKALSENDTLEELNLA 1151 (1313)
Q Consensus      1135 l~~~l~~~~~L~~L~Ls 1151 (1313)
                      +..+|..+.+|.+|-..
T Consensus       275 ~~~al~~n~tl~el~~d  291 (353)
T KOG3735|consen  275 LLRALQSNKSLTELKND  291 (353)
T ss_pred             HHHHHhccchhhHhhhh
Confidence            66666666666555443

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.46  E-value=0.03  Score=60.94  Aligned_cols=88  Identities=18%  Similarity=0.215  Sum_probs=79.2

Q ss_pred             HHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHH
Q 000742          177 MELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLG  256 (1313)
Q Consensus       177 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la  256 (1313)
                      +..|.+++|++.|..|+++         .+..+..|...+.++..++++..|+..+..|+++.+      +.+..|-..|
T Consensus       125 ln~G~~~~ai~~~t~ai~l---------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~------Dsa~~ykfrg  189 (377)
T KOG1308|consen  125 LNDGEFDTAIELFTSAIEL---------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINP------DSAKGYKFRG  189 (377)
T ss_pred             hcCcchhhhhccccccccc---------CCchhhhcccccceeeeccCCchhhhhhhhhhccCc------ccccccchhh
Confidence            4458899999999999988         555788999999999999999999999999999976      7788888899


Q ss_pred             HHHHHhcCHHHHHHHHHHHHHHH
Q 000742          257 ELHYRVQKYDEAILCYQKALNLA  279 (1313)
Q Consensus       257 ~~~~~~g~~~~A~~~~~kal~~~  279 (1313)
                      .++..+|++++|..+++.|.++.
T Consensus       190 ~A~rllg~~e~aa~dl~~a~kld  212 (377)
T KOG1308|consen  190 YAERLLGNWEEAAHDLALACKLD  212 (377)
T ss_pred             HHHHHhhchHHHHHHHHHHHhcc
Confidence            99999999999999999998875

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.45  E-value=0.011  Score=62.15  Aligned_cols=40  Identities=15%  Similarity=0.119  Sum_probs=18.5

Q ss_pred             hcCCCCcEEEeecCCCCHH-HHHHHHHHHhcCCCccEEEeCCCC
Q 000742          942 KNCKVLYSLNIENCSITSR-TIQKVADALGAESTLAQLCIGYNS  984 (1313)
Q Consensus       942 ~~~~~L~~L~L~~n~i~~~-~~~~l~~~l~~~~~L~~L~Ls~n~  984 (1313)
                      ..+++|+.|.++.|.+... ++..++   ..+++|++|+|+.|.
T Consensus        62 P~Lp~LkkL~lsdn~~~~~~~l~vl~---e~~P~l~~l~ls~Nk  102 (260)
T KOG2739|consen   62 PKLPKLKKLELSDNYRRVSGGLEVLA---EKAPNLKVLNLSGNK  102 (260)
T ss_pred             CCcchhhhhcccCCcccccccceehh---hhCCceeEEeecCCc
Confidence            3445566666666622211 112221   234566666666665

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=94.41  E-value=0.4  Score=47.42  Aligned_cols=162  Identities=14%  Similarity=0.172  Sum_probs=105.5

Q ss_pred             ccChHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcc
Q 000742           81 LEHFKDALI-YQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRS  159 (1313)
Q Consensus        81 ~g~~~~A~~-~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~  159 (1313)
                      +|+|-++++ .| ++|.++++.+-+......+.+.+|..+..-   ..++.++...|+.+|..|-..             
T Consensus        40 LgdYlEgi~knF-~~A~kv~K~nCden~y~kSCyKyG~y~~~G---KgG~~~~l~~a~r~~~~aC~~-------------  102 (248)
T KOG4014|consen   40 LGDYLEGIQKNF-QAAVKVFKKNCDENSYPKSCYKYGMYMLAG---KGGDDASLSKAIRPMKIACDA-------------  102 (248)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHhcccccCCcHHHHHhhhhhhcc---cCCCccCHHHHHHHHHHHhcc-------------
Confidence            344445543 44 666666676656555667788888776532   234568899999999988764             


Q ss_pred             hhhHHHHHHHHHHHHHHHHc-----C--CHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHH--------------
Q 000742          160 SFLKEYIDAHNNIGMLQMEL-----D--NLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNV--------------  218 (1313)
Q Consensus       160 ~~~p~~~~~~~~la~~y~~~-----g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~--------------  218 (1313)
                          ..+.+-.++|.++..-     +  +..+|.+|+.+|-.+-.           +.+-++|...              
T Consensus       103 ----n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~-----------~~aCf~LS~m~~~g~~k~~t~ap~  167 (248)
T KOG4014|consen  103 ----NIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLED-----------GEACFLLSTMYMGGKEKFKTNAPG  167 (248)
T ss_pred             ----CCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCC-----------chHHHHHHHHHhccchhhcccCCC
Confidence                3356777777776542     2  37889999999876621           1233333333              


Q ss_pred             ----------HHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHc
Q 000742          219 ----------YMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYR----VQKYDEAILCYQKALNLAQSM  282 (1313)
Q Consensus       219 ----------y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~kal~~~~~~  282 (1313)
                                +....+.++|.++.-+|-++        ....+..++...|..    -++-++|..|-.+|.++....
T Consensus       168 ~g~p~~~~~~~~~~kDMdka~qfa~kACel--------~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~  237 (248)
T KOG4014|consen  168 EGKPLDRAELGSLSKDMDKALQFAIKACEL--------DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEEL  237 (248)
T ss_pred             CCCCcchhhhhhhhHhHHHHHHHHHHHHhc--------CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHH
Confidence                      33345677777777777666        556777777777753    246778888888888877653

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=94.34  E-value=0.026  Score=36.30  Aligned_cols=21  Identities=43%  Similarity=0.597  Sum_probs=8.8

Q ss_pred             CCccEEEccCCCCChHHHHHH
Q 000742         1086 HGILELNLGGNPIMKEGANAL 1106 (1313)
Q Consensus      1086 ~~L~~L~Ls~N~i~~~~~~~l 1106 (1313)
                      ++|++|+|++|.|++.|+..|
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHh
Confidence            344444444444444444444

...

>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=94.33  E-value=10  Score=43.29  Aligned_cols=194  Identities=8%  Similarity=-0.057  Sum_probs=119.2

Q ss_pred             CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcc
Q 000742          204 DDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSME  283 (1313)
Q Consensus       204 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~  283 (1313)
                      +-.......+..+.++...+++..|...+++..-.+.+..+......+...++.++.+-+..-.+..+.-+++....+..
T Consensus       268 d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~  347 (482)
T KOG4322|consen  268 DYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEYS  347 (482)
T ss_pred             hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhc
Confidence            33445566677888888888999998888888877776666667778888888888888877777777777766655543


Q ss_pred             ChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742          284 DEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYA  363 (1313)
Q Consensus       284 ~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~  363 (1313)
                      .......             ...                                      .++......|..++|....
T Consensus       348 ldyl~a~-------------~~L--------------------------------------~LAl~~L~LG~pk~Al~lL  376 (482)
T KOG4322|consen  348 LDYLEAN-------------ENL--------------------------------------DLALEHLALGSPKAALPLL  376 (482)
T ss_pred             cchhhhh-------------chH--------------------------------------HHHHHHHHcCChHHHHHHH
Confidence            3221110             000                                      1111111222333333444


Q ss_pred             HHHHHHHHHhCCchhhHHH-------HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCH
Q 000742          364 KRKKRIASELCDKGKLSDS-------FLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDW  436 (1313)
Q Consensus       364 ~~a~~i~~~~~~~~~~a~~-------~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~  436 (1313)
                      +.+.......+.-...+.+       +..-+..+ ...+.+.+..++++|-.+..+.+-+.....+++-+|..|...|+.
T Consensus       377 h~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~L~~A~~~f~kL~~he~ildv~yf~A~~yn~lGd~  455 (482)
T KOG4322|consen  377 HTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRYLDLAQSIFYKLGCHEKILDVTYFSAYQYNHLGDS  455 (482)
T ss_pred             HhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHhhcCc
Confidence            4443332222111111111       11112222 566788888889998888888888888888899999999998875


Q ss_pred             H---HHHHHHHHHHHH
Q 000742          437 A---GALDAFQEGYRI  449 (1313)
Q Consensus       437 ~---~A~~~~~kAl~i  449 (1313)
                      .   ++...|+|+...
T Consensus       456 ~eRn~~AslFrk~~~~  471 (482)
T KOG4322|consen  456 PERNLLASLFRKAWRY  471 (482)
T ss_pred             hHHHHHHHHHHHHHHh
Confidence            4   566666666554

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.15  E-value=0.11  Score=38.76  Aligned_cols=33  Identities=24%  Similarity=0.354  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 000742          421 LAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEA  453 (1313)
Q Consensus       421 ~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~  453 (1313)
                      .++.++|.+|..+|++++|..++++++++.++.
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~   35 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEIRERL   35 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence            457788888888888888888888888877664

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=94.03  E-value=15  Score=50.91  Aligned_cols=70  Identities=17%  Similarity=0.102  Sum_probs=60.9

Q ss_pred             CchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000742          375 DKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVE  452 (1313)
Q Consensus       375 ~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~  452 (1313)
                      .....+..|...|++-...|+++.|-.+.-+|.+.        ..+.++...|+.....|+-..|+..+++.++....
T Consensus      1665 ~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~--------r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1665 LKSRLGECWLQSARIARLAGHLQRAQNALLNAKES--------RLPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred             ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc--------ccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence            35567899999999999999999999999888854        25677899999999999999999999999977643

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.99  E-value=0.11  Score=38.63  Aligned_cols=36  Identities=22%  Similarity=0.364  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCC
Q 000742           28 ARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLP   63 (1313)
Q Consensus        28 a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~   63 (1313)
                      +.++..+|.+|...|++++|+.++++++.+..+..+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G   37 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLG   37 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhc
Confidence            456899999999999999999999999999876543

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=93.96  E-value=1.1  Score=44.56  Aligned_cols=167  Identities=20%  Similarity=0.246  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHhCCHHHHH-HHHHHHHHHHHhhCCCCCchhHHHHHHHHHHH-----ccChHHHHHHHHHHHHHHHHHhcC
Q 000742           31 ANVIGDILKNRGEYVEAL-KWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLR-----LEHFKDALIYQVKKHLELAKDASD  104 (1313)
Q Consensus        31 ~~~lg~~y~~~g~~~eAl-~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~-----~g~~~~A~~~~~~kal~l~~~~~~  104 (1313)
                      ++.||..+       +++ +.|+.|..+.+..-++...+...+.+|..+..     .++...|+.++ +.+-+    .++
T Consensus        37 C~lLgdYl-------Egi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~-~~aC~----~n~  104 (248)
T KOG4014|consen   37 CQLLGDYL-------EGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPM-KIACD----ANI  104 (248)
T ss_pred             HHHHHHHH-------HHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHH-HHHhc----cCC
Confidence            66666655       333 35566666666666666778888888887653     35778888888 66655    222


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHH-------
Q 000742          105 LVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQM-------  177 (1313)
Q Consensus       105 ~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~-------  177 (1313)
                          ..+..++|.++..- .......-+.++|..|+.+|-++                 ....+-++|...|.       
T Consensus       105 ----~~aC~~~gLl~~~g-~~~r~~dpd~~Ka~~y~traCdl-----------------~~~~aCf~LS~m~~~g~~k~~  162 (248)
T KOG4014|consen  105 ----PQACRYLGLLHWNG-EKDRKADPDSEKAERYMTRACDL-----------------EDGEACFLLSTMYMGGKEKFK  162 (248)
T ss_pred             ----HHHHhhhhhhhccC-cCCccCCCCcHHHHHHHHHhccC-----------------CCchHHHHHHHHHhccchhhc
Confidence                24566777776542 22222223477899999888655                 12233333333333       


Q ss_pred             -----------------HcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHH
Q 000742          178 -----------------ELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMEL----RMWDKSREHIEQDI  236 (1313)
Q Consensus       178 -----------------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~----g~~~~A~~~~~kal  236 (1313)
                                       -..+.++|.++..+|-++-           ...+-.|+.+.|..-    ++.++|..|-++|.
T Consensus       163 t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~-----------~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~  231 (248)
T KOG4014|consen  163 TNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD-----------IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAK  231 (248)
T ss_pred             ccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC-----------ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHH
Confidence                             3367788888888887761           234555666666542    47899999999999


Q ss_pred             HHHHHh
Q 000742          237 IICKKI  242 (1313)
Q Consensus       237 ~~~~~~  242 (1313)
                      ++.+..
T Consensus       232 e~~~e~  237 (248)
T KOG4014|consen  232 EIMEEL  237 (248)
T ss_pred             HHHHHH
Confidence            998754

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=93.91  E-value=3.6  Score=44.06  Aligned_cols=138  Identities=12%  Similarity=0.129  Sum_probs=93.2

Q ss_pred             HccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcc
Q 000742           80 RLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRS  159 (1313)
Q Consensus        80 ~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~  159 (1313)
                      ....-++-++-+ .+.++-....+...+.+.++.++|..|.+.        ++.+.+.+...+.+.-+-..+-.-     
T Consensus        87 l~kkneeki~El-de~i~~~eedngE~e~~ea~~n~aeyY~qi--------~D~~ng~~~~~~~~~~a~stg~Ki-----  152 (412)
T COG5187          87 LLKKNEEKIEEL-DERIREKEEDNGETEGSEADRNIAEYYCQI--------MDIQNGFEWMRRLMRDAMSTGLKI-----  152 (412)
T ss_pred             HHHhhHHHHHHH-HHHHHHHhhcccchHHHHHHHHHHHHHHHH--------hhhhhHHHHHHHHHHHHHhcccch-----
Confidence            334455566667 677766666655677889999999999998        899999998888877655544332     


Q ss_pred             hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000742          160 SFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIIC  239 (1313)
Q Consensus       160 ~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~  239 (1313)
                          +..-....+|.+|..+.-.++.++.....   .++   +++....-+.....|.......+|.+|-..+-..+.-+
T Consensus       153 ----Dv~l~kiRlg~~y~d~~vV~e~lE~~~~~---iEk---GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF  222 (412)
T COG5187         153 ----DVFLCKIRLGLIYGDRKVVEESLEVADDI---IEK---GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTF  222 (412)
T ss_pred             ----hhHHHHHHHHHhhccHHHHHHHHHHHHHH---HHh---CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence                44455566777775554444444444333   333   45555566666677777788888888888887777666


Q ss_pred             HH
Q 000742          240 KK  241 (1313)
Q Consensus       240 ~~  241 (1313)
                      ..
T Consensus       223 ~S  224 (412)
T COG5187         223 ES  224 (412)
T ss_pred             cc
Confidence            54

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.85  E-value=19  Score=43.16  Aligned_cols=102  Identities=11%  Similarity=0.133  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 000742           31 ANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQR  110 (1313)
Q Consensus        31 ~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~  110 (1313)
                      +.+-|.-.+...+|..|+++|...+...+........+.....++.||..+.+.+.|.+++ ++|-+..|+..-.     
T Consensus       357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~-~EAE~~d~~~~l~-----  430 (872)
T KOG4814|consen  357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVY-QEAEEVDRQSPLC-----  430 (872)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHhhccccHHH-----
Confidence            3455677788999999999999999888665444556888899999999999999999999 9998877655321     


Q ss_pred             HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHH
Q 000742          111 ACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLA  147 (1313)
Q Consensus       111 a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~  147 (1313)
                       ...+-.+....        +.-++|+....+.....
T Consensus       431 -q~~~~~~~~~E--------~~Se~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  431 -QLLMLQSFLAE--------DKSEEALTCLQKIKSSE  458 (872)
T ss_pred             -HHHHHHHHHHh--------cchHHHHHHHHHHHhhh
Confidence             12222222222        67778887777665554

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=93.82  E-value=0.73  Score=51.62  Aligned_cols=97  Identities=8%  Similarity=0.072  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhchhh
Q 000742          168 AHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYME-LRMWDKSREHIEQDIIICKKIEHCQ  246 (1313)
Q Consensus       168 ~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~-~g~~~~A~~~~~kal~~~~~~~~~~  246 (1313)
                      +|..+.....+.+..+.|..+|.+|.+.         ......+|...|.+.+. .++.+.|...|+.+++.++      
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~---------~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~------   67 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKD---------KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP------   67 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCC---------CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT------
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcC---------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC------
Confidence            4555666666677799999999999743         22234678888888666 5677779999999999877      


Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 000742          247 GEAKGYINLGELHYRVQKYDEAILCYQKALNLA  279 (1313)
Q Consensus       247 ~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~  279 (1313)
                      .....+......+...++.+.|...|++++...
T Consensus        68 ~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l  100 (280)
T PF05843_consen   68 SDPDFWLEYLDFLIKLNDINNARALFERAISSL  100 (280)
T ss_dssp             T-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS
T ss_pred             CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc
Confidence            566667777788899999999999999998763

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=93.74  E-value=15  Score=41.62  Aligned_cols=178  Identities=15%  Similarity=0.015  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHH--HHHhCCHHHHHHHHHHHHHHHHhhCCCC----CchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHH
Q 000742           27 EARWANVIGDI--LKNRGEYVEALKWFRIDYDVSVKYLPEK----HLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAK  100 (1313)
Q Consensus        27 ~a~~~~~lg~~--y~~~g~~~eAl~~~~~al~~~~~~~~~~----~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~  100 (1313)
                      +..+|..+-..  ...+.+|.+|.+.-+..+.-.... ...    -.+..|+.+..+|...|+...-...+ ..-+..+.
T Consensus       123 Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~-nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l-~~~lrtAt  200 (493)
T KOG2581|consen  123 EIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQ-NRRTLDLIAAKLYFYLYLSYELEGRLADIRSFL-HALLRTAT  200 (493)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc-chhhHHHHHHHHHHHHHHHHHhhcchHHHHHHH-HHHHHHhh
Confidence            44444443333  345688999988877655432111 111    13678889999999999977766666 66666665


Q ss_pred             HhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcC
Q 000742          101 DASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELD  180 (1313)
Q Consensus       101 ~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g  180 (1313)
                      --.+...++...+.+-+.|..-        +.|++|.+...++.       -+..    .....++...+.+|.+..-++
T Consensus       201 Lrhd~e~qavLiN~LLr~yL~n--------~lydqa~~lvsK~~-------~pe~----~snne~ARY~yY~GrIkaiql  261 (493)
T KOG2581|consen  201 LRHDEEGQAVLINLLLRNYLHN--------KLYDQADKLVSKSV-------YPEA----ASNNEWARYLYYLGRIKAIQL  261 (493)
T ss_pred             hcCcchhHHHHHHHHHHHHhhh--------HHHHHHHHHhhccc-------Cccc----cccHHHHHHHHHHhhHHHhhc
Confidence            5556677777778888888765        77777766554432       1110    112378999999999999999


Q ss_pred             CHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHH
Q 000742          181 NLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKS  228 (1313)
Q Consensus       181 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A  228 (1313)
                      +|..|.+++-+|+..++..   .--...-.+...+-.+-..+|++.+-
T Consensus       262 dYssA~~~~~qa~rkapq~---~alGf~q~v~k~~ivv~ll~geiPer  306 (493)
T KOG2581|consen  262 DYSSALEYFLQALRKAPQH---AALGFRQQVNKLMIVVELLLGEIPER  306 (493)
T ss_pred             chhHHHHHHHHHHHhCcch---hhhhHHHHHHHHHHHHHHHcCCCcch
Confidence            9999999999999987652   11111222333334444556666544

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=93.61  E-value=0.33  Score=41.19  Aligned_cols=73  Identities=18%  Similarity=0.228  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcC
Q 000742           28 ARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASD  104 (1313)
Q Consensus        28 a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~  104 (1313)
                      ++....-|.-++...+.++|+..++++++....   .+....++-.+..+|...|+|.+++++. .+-++++...++
T Consensus         6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~---~~~rf~~lG~l~qA~~e~Gkyr~~L~fA-~~Q~~~A~eled   78 (80)
T PF10579_consen    6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITD---REDRFRVLGYLIQAHMEWGKYREMLAFA-LQQLEIAEELED   78 (80)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHccC
Confidence            444556777788999999999999999987743   3456788889999999999999999999 888888877654

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=93.60  E-value=0.072  Score=61.03  Aligned_cols=91  Identities=18%  Similarity=0.079  Sum_probs=80.5

Q ss_pred             hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh
Q 000742            5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF   84 (1313)
Q Consensus         5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~   84 (1313)
                      ...|+.|+..|.+|+++++.....  +...+.++...++|..|+.-+.+|++..+.      ...+|+..|.+...++++
T Consensus        17 ~~~fd~avdlysKaI~ldpnca~~--~anRa~a~lK~e~~~~Al~Da~kaie~dP~------~~K~Y~rrg~a~m~l~~~   88 (476)
T KOG0376|consen   17 DKVFDVAVDLYSKAIELDPNCAIY--FANRALAHLKVESFGGALHDALKAIELDPT------YIKAYVRRGTAVMALGEF   88 (476)
T ss_pred             cchHHHHHHHHHHHHhcCCcceee--echhhhhheeechhhhHHHHHHhhhhcCch------hhheeeeccHHHHhHHHH
Confidence            367999999999999999986554  678889999999999999999999998744      389999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcC
Q 000742           85 KDALIYQVKKHLELAKDASD  104 (1313)
Q Consensus        85 ~~A~~~~~~kal~l~~~~~~  104 (1313)
                      .+|+..| ++...+.|+..+
T Consensus        89 ~~A~~~l-~~~~~l~Pnd~~  107 (476)
T KOG0376|consen   89 KKALLDL-EKVKKLAPNDPD  107 (476)
T ss_pred             HHHHHHH-HHhhhcCcCcHH
Confidence            9999999 999998887654

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=93.56  E-value=0.76  Score=39.10  Aligned_cols=71  Identities=15%  Similarity=0.073  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh
Q 000742          383 FLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLP  456 (1313)
Q Consensus       383 ~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~  456 (1313)
                      ...-|.-++...+.++|+..++++++...   +.++.-.++-.+..+|...|+|.+++++--.-++++++.++|
T Consensus         9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~---~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~   79 (80)
T PF10579_consen    9 QIEKGLKLYHQNETQQALQKWRKALEKIT---DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP   79 (80)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            34456666788999999999999997544   455667778889999999999999999999999999988765

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]

Probab=93.50  E-value=0.11  Score=56.73  Aligned_cols=90  Identities=28%  Similarity=0.249  Sum_probs=45.9

Q ss_pred             cceEEEccCC-CCCHHHHHHHHhcccCCCCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHH
Q 000742          890 VDLTLDLHCN-RFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADA  968 (1313)
Q Consensus       890 ~l~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  968 (1313)
                      .+..++|+++ +|....+..++..+..++..+...|-+.+.++...-+++.++..|++|++|++++|-|++.|+-.+..+
T Consensus       199 ~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi~a~~~a  278 (353)
T KOG3735|consen  199 GLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGIMALLRA  278 (353)
T ss_pred             CceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHHHHHHHHH
Confidence            3444444444 234444444555554555555555555555555555555555555555555555555555555555555


Q ss_pred             HhcCCCccEEE
Q 000742          969 LGAESTLAQLC  979 (1313)
Q Consensus       969 l~~~~~L~~L~  979 (1313)
                      |..+.+|+.|.
T Consensus       279 l~~n~tl~el~  289 (353)
T KOG3735|consen  279 LQSNKSLTELK  289 (353)
T ss_pred             HhccchhhHhh
Confidence            55555554443

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=93.04  E-value=4.5  Score=44.24  Aligned_cols=129  Identities=16%  Similarity=0.134  Sum_probs=80.3

Q ss_pred             hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChH
Q 000742            6 MQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFK   85 (1313)
Q Consensus         6 ~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~   85 (1313)
                      ..+++-.+..+.|.+.....+...++...|..|.+.|+-+.|++++++..+.....+..-+..-....+|..|.   +.+
T Consensus        82 eki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~---D~~  158 (393)
T KOG0687|consen   82 EKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYL---DHD  158 (393)
T ss_pred             HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhc---cHH
Confidence            34445555556666665556666779999999999999999999999988877555333334444556666664   455


Q ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHH
Q 000742           86 DALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKL  146 (1313)
Q Consensus        86 ~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l  146 (1313)
                      --.+.. ++|-.+..+-+|+...-+.-..-|......        .++.+|-..|-.++.-
T Consensus       159 lV~~~i-ekak~liE~GgDWeRrNRlKvY~Gly~msv--------R~Fk~Aa~Lfld~vsT  210 (393)
T KOG0687|consen  159 LVTESI-EKAKSLIEEGGDWERRNRLKVYQGLYCMSV--------RNFKEAADLFLDSVST  210 (393)
T ss_pred             HHHHHH-HHHHHHHHhCCChhhhhhHHHHHHHHHHHH--------HhHHHHHHHHHHHccc
Confidence            555556 777777777777654333222233333322        4555555555544443

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=92.94  E-value=7.1  Score=42.79  Aligned_cols=136  Identities=15%  Similarity=0.116  Sum_probs=98.8

Q ss_pred             CHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 000742           43 EYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEM  122 (1313)
Q Consensus        43 ~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l  122 (1313)
                      .-++-++-+++.++-..+..++....+++...|..|.+.|+-+.|++.+ .+..+-.-..+...........+|..|.. 
T Consensus        79 ~neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~-~~t~~ktvs~g~kiDVvf~~iRlglfy~D-  156 (393)
T KOG0687|consen   79 ANEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEAL-RKTYEKTVSLGHKIDVVFYKIRLGLFYLD-  156 (393)
T ss_pred             hhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHhhcccchhhHHHHHHHHHhhcc-
Confidence            3455677788888888777677777899999999999999999999999 99888877777776667777888888853 


Q ss_pred             hccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhh
Q 000742          123 FLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEE  199 (1313)
Q Consensus       123 ~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~  199 (1313)
                                .+--.+..++|-.+.++-++-.         ..-..-...|.......+|.+|-..|-.++..+...
T Consensus       157 ----------~~lV~~~iekak~liE~GgDWe---------RrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~  214 (393)
T KOG0687|consen  157 ----------HDLVTESIEKAKSLIEEGGDWE---------RRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSY  214 (393)
T ss_pred             ----------HHHHHHHHHHHHHHHHhCCChh---------hhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccce
Confidence                      3444444555555555544432         112233445566667789999999999988877664

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=92.83  E-value=9.8  Score=41.22  Aligned_cols=188  Identities=13%  Similarity=0.079  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHH-ccChHHHHHHHHHHHHHHHHHhcCHHHHH
Q 000742           31 ANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLR-LEHFKDALIYQVKKHLELAKDASDLVEQQ  109 (1313)
Q Consensus        31 ~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~-~g~~~~A~~~~~~kal~l~~~~~~~~~~a  109 (1313)
                      +..+|.++.+.|+|++++.+.++++...+.     ...+=...++.+|.. .|....+...+ ..........+...   
T Consensus         4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~e-----Lt~eERnLlsvayKn~i~~~R~s~R~l-~~~e~~~~~~~~~~---   74 (236)
T PF00244_consen    4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPE-----LTEEERNLLSVAYKNVIGSRRASWRIL-SSIEQKEENKGNEK---   74 (236)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHTSS--------HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTTTTHH---
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCC-----CCHHHHHHHHHHHHhccccchHHHHhh-hhHhhhhcccchhH---
Confidence            457899999999999999999999877321     113334455555533 24444454444 33333222221111   


Q ss_pred             HHHHHHHHHHHHHhccCCcchhhHH-HHHHHHHHHHHHHHHhccCCC---CCcchhhHHHHHHHHHHHHHHHH---cCCH
Q 000742          110 RACTQLGRTYYEMFLRSDDDHYSIR-NAKKYFKSAMKLAQTLKENPA---TSRSSFLKEYIDAHNNIGMLQME---LDNL  182 (1313)
Q Consensus       110 ~a~~~lg~~y~~l~~~~~~~~~~~~-~A~~~~~~Al~l~~~~~~~~~---~~~~~~~p~~~~~~~~la~~y~~---~g~~  182 (1313)
                        ...+..-|.          .+.+ +=.......+.+.+..--+..   ..+..|....+..|..++.+...   ..-.
T Consensus        75 --~~~~i~~yk----------~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~  142 (236)
T PF00244_consen   75 --QVKLIKDYK----------KKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAA  142 (236)
T ss_dssp             --HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred             --HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHH
Confidence              112222222          1122 223445556666555221111   11112222333444444443321   1124


Q ss_pred             HHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHH
Q 000742          183 EEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVY-MELRMWDKSREHIEQDIIICK  240 (1313)
Q Consensus       183 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y-~~~g~~~~A~~~~~kal~~~~  240 (1313)
                      ++|...|++|++++... ....+|.......|.+..| ..+|+.++|++..++|+..+-
T Consensus       143 ~~a~~aY~~A~~~a~~~-L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~  200 (236)
T PF00244_consen  143 EKALEAYEEALEIAKKE-LPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI  200 (236)
T ss_dssp             HHHHHHHHHHHHHHHHH-SCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHhcc-cCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence            78999999999998873 2355666666666776655 558999999999999887764

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=92.65  E-value=7.5  Score=46.20  Aligned_cols=83  Identities=13%  Similarity=0.153  Sum_probs=48.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHH------HHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChh
Q 000742          213 HNLGNVYMELRMWDKSREHIEQ------DIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDED  286 (1313)
Q Consensus       213 ~~lg~~y~~~g~~~~A~~~~~k------al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~  286 (1313)
                      ..+|.++...|++.+|.+.|.+      |++++.        ..-++.+++-|...|..++-....++--+.+.....+.
T Consensus       636 iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyT--------DlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk  707 (1081)
T KOG1538|consen  636 LLLADVFAYQGKFHEAAKLFKRSGHENRALEMYT--------DLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK  707 (1081)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHH--------HHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH
Confidence            3567778888888888888865      344432        22345556666667776666666666655555554433


Q ss_pred             HHHHHHHHhHHHHHHHHH
Q 000742          287 ALASQIDQNIETVKKAIE  304 (1313)
Q Consensus       287 ~~~~~~~~~lg~~~~a~~  304 (1313)
                      . ++..+...|+..+|+.
T Consensus       708 a-AAEmLiSaGe~~KAi~  724 (1081)
T KOG1538|consen  708 A-AAEMLISAGEHVKAIE  724 (1081)
T ss_pred             H-HHHHhhcccchhhhhh
Confidence            2 2334444455444443

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=92.33  E-value=4.1  Score=48.50  Aligned_cols=176  Identities=10%  Similarity=-0.094  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh-------HHHHHHHHHHHHHHHHHh-
Q 000742           31 ANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF-------KDALIYQVKKHLELAKDA-  102 (1313)
Q Consensus        31 ~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~-------~~A~~~~~~kal~l~~~~-  102 (1313)
                      ...+|+.++..|+|+-|...|+.+..-+.........+.++...|.+....+..       ++...++ +.|+..+... 
T Consensus       211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~l-e~A~~~Y~~~~  289 (414)
T PF12739_consen  211 MRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYL-ENAYYTYLKSA  289 (414)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHH-HHHHHHHHhhh
Confidence            678999999999999999999998887654333334566677777777777744       3666777 8887776662 


Q ss_pred             ----cCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHH--HHhccCCCCCcchhhHHHHHHHHHHHHHH
Q 000742          103 ----SDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLA--QTLKENPATSRSSFLKEYIDAHNNIGMLQ  176 (1313)
Q Consensus       103 ----~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~--~~~~~~~~~~~~~~~p~~~~~~~~la~~y  176 (1313)
                          .......++....+.++...        +.+.+|...+-++....  ..+..          -..+..+-.+|.+|
T Consensus       290 ~~~~~~~~~a~R~~ll~~ell~~~--------~~~~~a~~~~~~~~~~~l~~~l~~----------~~~alllE~~a~~~  351 (414)
T PF12739_consen  290 LPRCSLPYYALRCALLLAELLKSR--------GGYWEAADQLIRWTSEILESDLRP----------FGSALLLEQAAYCY  351 (414)
T ss_pred             ccccccccchHHHHHHHHHHHHhc--------CccHHHHHHHHHHHHHHHhhhhhh----------HhhHHHHHHHHHhh
Confidence                22223345555556665555        66666666555554431  11100          01234444444444


Q ss_pred             HHcCCHHHHHHHHHHHHhHhhhhccCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742          177 MELDNLEEAKKFLIRGLEICNEEEVSED-DDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK  240 (1313)
Q Consensus       177 ~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~  240 (1313)
                                    ..+...... .... ....+.-+..-|.-|...|+...|..+|.+|+..+.
T Consensus       352 --------------~~~~~~~~~-~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~  401 (414)
T PF12739_consen  352 --------------ASLRSNRPS-PGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE  401 (414)
T ss_pred             --------------cccccCCCC-ccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence                          000000000 0000 112233344456788888999999999998888766

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=92.17  E-value=25  Score=39.96  Aligned_cols=156  Identities=15%  Similarity=0.148  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000742          109 QRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKF  188 (1313)
Q Consensus       109 a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~  188 (1313)
                      ..+|..+-.....+      ++.++.+|.+.-...+.-..- .+.     -.+.--.+..|+.+..+|...|+...-...
T Consensus       124 i~aY~~lLv~Lfl~------d~K~~kea~~~~~~~l~~i~~-~nr-----RtlD~i~ak~~fy~~l~~E~~~~l~~~rs~  191 (493)
T KOG2581|consen  124 IEAYLYLLVLLFLI------DQKEYKEADKISDALLASISI-QNR-----RTLDLIAAKLYFYLYLSYELEGRLADIRSF  191 (493)
T ss_pred             HHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHh-cch-----hhHHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence            44555444433333      457788887776665543211 111     122334577889999999999998777777


Q ss_pred             HHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHH
Q 000742          189 LIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEA  268 (1313)
Q Consensus       189 ~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  268 (1313)
                      +..-+..+.-   ..+....+.....+-+.|...+.|+.|.....++.  ++........++.++.+|.+..-+++|..|
T Consensus       192 l~~~lrtAtL---rhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~snne~ARY~yY~GrIkaiqldYssA  266 (493)
T KOG2581|consen  192 LHALLRTATL---RHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASNNEWARYLYYLGRIKAIQLDYSSA  266 (493)
T ss_pred             HHHHHHHhhh---cCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--CccccccHHHHHHHHHHhhHHHhhcchhHH
Confidence            7666665432   34566778888888999999999999988877764  222222337788999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 000742          269 ILCYQKALNLAQS  281 (1313)
Q Consensus       269 ~~~~~kal~~~~~  281 (1313)
                      .+++-+|+..+|.
T Consensus       267 ~~~~~qa~rkapq  279 (493)
T KOG2581|consen  267 LEYFLQALRKAPQ  279 (493)
T ss_pred             HHHHHHHHHhCcc
Confidence            9999999999886

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.16  E-value=5.4  Score=49.16  Aligned_cols=200  Identities=11%  Similarity=0.121  Sum_probs=102.7

Q ss_pred             HHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHH
Q 000742          189 LIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEA  268 (1313)
Q Consensus       189 ~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  268 (1313)
                      |.-|+.+++..  ..+......++...|..++..|++++|...|-+++...+.    ....       .-|.......+=
T Consensus       350 y~~Ai~LAk~~--~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~----s~Vi-------~kfLdaq~IknL  416 (933)
T KOG2114|consen  350 YKVAINLAKSQ--HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP----SEVI-------KKFLDAQRIKNL  416 (933)
T ss_pred             HHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh----HHHH-------HHhcCHHHHHHH
Confidence            44444555442  2345567888899999999999999999999999876541    1111       111222333333


Q ss_pred             HHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHH
Q 000742          269 ILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIE  348 (1313)
Q Consensus       269 ~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~  348 (1313)
                      ..|++...+..-...+....+-.+|..++++.+-.+...+.-            .+...-+.+.+..++.+         
T Consensus       417 t~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~------------~g~~~fd~e~al~Ilr~---------  475 (933)
T KOG2114|consen  417 TSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD------------KGEWFFDVETALEILRK---------  475 (933)
T ss_pred             HHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC------------CcceeeeHHHHHHHHHH---------
Confidence            444444444433444444555556666666554333322210            00000011111111111         


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Q 000742          349 KSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGN  428 (1313)
Q Consensus       349 ~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~  428 (1313)
                                 ..|+.+|..++...+.++      ..+-.++..+++|++|+.|++..=        .+.........|.
T Consensus       476 -----------snyl~~a~~LA~k~~~he------~vl~ille~~~ny~eAl~yi~slp--------~~e~l~~l~kyGk  530 (933)
T KOG2114|consen  476 -----------SNYLDEAELLATKFKKHE------WVLDILLEDLHNYEEALRYISSLP--------ISELLRTLNKYGK  530 (933)
T ss_pred             -----------hChHHHHHHHHHHhccCH------HHHHHHHHHhcCHHHHHHHHhcCC--------HHHHHHHHHHHHH
Confidence                       134444555555444332      224456778899999999886421        2233444556666


Q ss_pred             HHHHcCCHHHHHHHHHHHHH
Q 000742          429 VLDSNGDWAGALDAFQEGYR  448 (1313)
Q Consensus       429 ~y~~~g~~~~A~~~~~kAl~  448 (1313)
                      .+.. ..+++-...+-+-+.
T Consensus       531 ~Ll~-h~P~~t~~ili~~~t  549 (933)
T KOG2114|consen  531 ILLE-HDPEETMKILIELIT  549 (933)
T ss_pred             HHHh-hChHHHHHHHHHHHh
Confidence            6654 344444444444443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.05  E-value=40  Score=42.07  Aligned_cols=36  Identities=19%  Similarity=0.240  Sum_probs=29.3

Q ss_pred             CcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 000742           23 NRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVS   58 (1313)
Q Consensus        23 ~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~   58 (1313)
                      +....+.++...|..++.+|++++|..+|-+.+...
T Consensus       363 d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l  398 (933)
T KOG2114|consen  363 DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL  398 (933)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence            335556778889999999999999999999887654

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=92.00  E-value=12  Score=40.16  Aligned_cols=139  Identities=12%  Similarity=0.063  Sum_probs=94.8

Q ss_pred             HhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 000742           40 NRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTY  119 (1313)
Q Consensus        40 ~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y  119 (1313)
                      ....-++-++.+.+.++-.+...+.....+++.++|..|...++.+.+.+.. .+.+.-+-..+-.......-..+|.+|
T Consensus        87 l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~-~~~~~~a~stg~KiDv~l~kiRlg~~y  165 (412)
T COG5187          87 LLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWM-RRLMRDAMSTGLKIDVFLCKIRLGLIY  165 (412)
T ss_pred             HHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHhcccchhhHHHHHHHHHhh
Confidence            3344566677787777777666556667899999999999999999999999 998888777766655556667888888


Q ss_pred             HHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhh
Q 000742          120 YEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEE  199 (1313)
Q Consensus       120 ~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~  199 (1313)
                      ..+           .-..+.++.+-.+.++-++-.         ..-..-...|.......+|.+|-..+...+..+...
T Consensus       166 ~d~-----------~vV~e~lE~~~~~iEkGgDWe---------RrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~  225 (412)
T COG5187         166 GDR-----------KVVEESLEVADDIIEKGGDWE---------RRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESS  225 (412)
T ss_pred             ccH-----------HHHHHHHHHHHHHHHhCCCHH---------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccccc
Confidence            533           333344444444444433322         112233344556666788888988888888776553

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.93  E-value=0.065  Score=58.45  Aligned_cols=86  Identities=10%  Similarity=-0.013  Sum_probs=72.7

Q ss_pred             hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh
Q 000742            5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF   84 (1313)
Q Consensus         5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~   84 (1313)
                      +|.+++|++.|..|+++++.....  |...|.++...+....|++.+..|+++.+.      .+.-|-..|.....+|++
T Consensus       127 ~G~~~~ai~~~t~ai~lnp~~a~l--~~kr~sv~lkl~kp~~airD~d~A~ein~D------sa~~ykfrg~A~rllg~~  198 (377)
T KOG1308|consen  127 DGEFDTAIELFTSAIELNPPLAIL--YAKRASVFLKLKKPNAAIRDCDFAIEINPD------SAKGYKFRGYAERLLGNW  198 (377)
T ss_pred             CcchhhhhcccccccccCCchhhh--cccccceeeeccCCchhhhhhhhhhccCcc------cccccchhhHHHHHhhch
Confidence            467888999999999998886555  889999999999999999999999888743      366777888889999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 000742           85 KDALIYQVKKHLELA   99 (1313)
Q Consensus        85 ~~A~~~~~~kal~l~   99 (1313)
                      .+|..++ ..|.++.
T Consensus       199 e~aa~dl-~~a~kld  212 (377)
T KOG1308|consen  199 EEAAHDL-ALACKLD  212 (377)
T ss_pred             HHHHHHH-HHHHhcc
Confidence            9999999 8888764

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=91.82  E-value=0.18  Score=35.17  Aligned_cols=28  Identities=21%  Similarity=0.221  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000742          211 LHHNLGNVYMELRMWDKSREHIEQDIII  238 (1313)
Q Consensus       211 ~~~~lg~~y~~~g~~~~A~~~~~kal~~  238 (1313)
                      +++.+|.+|...|++++|+++|++.++.
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            3444555555555555555555554443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=91.80  E-value=0.17  Score=35.24  Aligned_cols=32  Identities=19%  Similarity=0.392  Sum_probs=28.2

Q ss_pred             hHHHHHHHHHHHccChHHHHHHHHHHHHHHHHH
Q 000742           69 PTCQSLGEVYLRLEHFKDALIYQVKKHLELAKD  101 (1313)
Q Consensus        69 ~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~  101 (1313)
                      ++++.+|.+|...|++++|+.++ ++.++..|+
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~-~~~~~~~P~   32 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYF-QRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHH-HHHHHHSTT
T ss_pred             CHHHHHHHHHHHccCHHHHHHHH-HHHHHHCcC
Confidence            36789999999999999999999 999887664

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway

Probab=91.75  E-value=17  Score=49.73  Aligned_cols=164  Identities=15%  Similarity=0.169  Sum_probs=113.5

Q ss_pred             hhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcc------------------
Q 000742           68 LPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDD------------------  129 (1313)
Q Consensus        68 ~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~------------------  129 (1313)
                      .+....+|..|...|.+.+|+++| ..|+...+..+|..+.+.|+-.++.+..-+.......                  
T Consensus       242 gR~~k~~gd~~LlaG~~~dAl~~y-~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~~  320 (1185)
T PF08626_consen  242 GRLQKVLGDLYLLAGRWPDALKEY-TEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTSS  320 (1185)
T ss_pred             hhhhhhhhhHHHHcCCHHHHHHHH-HHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccCc
Confidence            456668999999999999999999 9999999999999999999988877655431100000                  


Q ss_pred             ------------------------------hhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhH--HHHHHHHHHHHHHH
Q 000742          130 ------------------------------HYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLK--EYIDAHNNIGMLQM  177 (1313)
Q Consensus       130 ------------------------------~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p--~~~~~~~~la~~y~  177 (1313)
                                                    ..-...-...+++++.++.+......    .+.|  -+.++...++..+.
T Consensus       321 ~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~----~~~p~lv~~E~~lr~~~~l~  396 (1185)
T PF08626_consen  321 SSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTS----EYVPQLVYSEACLRFARFLV  396 (1185)
T ss_pred             cCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhcccc----ccCcchHHHHHHHHHHHHHH
Confidence                                          01112223344555555544431110    0111  34567777777777


Q ss_pred             HcC--------------------CHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000742          178 ELD--------------------NLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDII  237 (1313)
Q Consensus       178 ~~g--------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~  237 (1313)
                      ...                    .-.++..+..+++...-..   -........|..+|.+|..+|-..++--+.+.++.
T Consensus       397 ~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~---l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~  473 (1185)
T PF08626_consen  397 AQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKD---LSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAV  473 (1185)
T ss_pred             HhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhh---CCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence            666                    6788888888888764331   23556789999999999999999888888888877


Q ss_pred             HH
Q 000742          238 IC  239 (1313)
Q Consensus       238 ~~  239 (1313)
                      ..
T Consensus       474 ~~  475 (1185)
T PF08626_consen  474 QL  475 (1185)
T ss_pred             Hh
Confidence            66

To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].

>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.55  E-value=19  Score=39.47  Aligned_cols=205  Identities=12%  Similarity=0.031  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000742          249 AKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIE-TVKKAIEVMDELKKEEQNLKKLTRNMIIAK  327 (1313)
Q Consensus       249 ~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg-~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~  327 (1313)
                      +.........++..|++..-.+.|++++..             .+.+-| +..++++.+-++.-.........+.+    
T Consensus         2 ~~~r~eev~~~~~~g~hk~~~~qyr~~l~~-------------~lt~~~~el~e~~k~~id~~~~~~vslvvsrql----   64 (399)
T KOG1497|consen    2 AAERSEEVVLIFAEGDHKDQAEQYRQLLAK-------------VLTNNGMELLEALKRFIDAIVNENVSLVVSRQL----   64 (399)
T ss_pred             hhHHHHHHHHHHhcCchhhHHHHHHHHHHH-------------HhccchHHHHHHHHHHHHHHHcCCchhhhHHHH----


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 000742          328 GTSQERKYLLQQNASLDRLIEKSSMI-FAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKS  406 (1313)
Q Consensus       328 ~~~~~a~~~~~~~~~l~~L~~~~~~~-~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~ka  406 (1313)
                                     +..+....... ....|++..+.-..--.+........+.+...+|.+|.+.+++..|-..+.-.
T Consensus        65 ---------------lsl~~~~l~~l~~e~~Kei~~~~l~~iq~rvisfeEqv~~irl~LAsiYE~Eq~~~~aaq~L~~I  129 (399)
T KOG1497|consen   65 ---------------LSLFDVELSILEDELRKEISHFTLEKIQPRVISFEEQVASIRLHLASIYEKEQNWRDAAQVLVGI  129 (399)
T ss_pred             ---------------HHHHHHHhccCCHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc


Q ss_pred             HHHH-HHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhHHHHHHhhcCHHHHHHHHH
Q 000742          407 WEMY-KSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEARRLQH  485 (1313)
Q Consensus       407 l~l~-~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~~L~~~~~~~~~~~~~a~~~~e  485 (1313)
                      -.-- +...+.......+..+|.+|.+.++..+|..+-.++--+.....++..+..-----|.+.-.+.+..++|.+|++
T Consensus       130 ~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYye  209 (399)
T KOG1497|consen  130 PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYE  209 (399)
T ss_pred             CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=91.32  E-value=8  Score=42.20  Aligned_cols=145  Identities=12%  Similarity=0.030  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 000742           31 ANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQR  110 (1313)
Q Consensus        31 ~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~  110 (1313)
                      -+.-+.-....|++.+|...|..+++..++.      ..+...++.+|...|+.+.|...+ ..    .|......    
T Consensus       137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~------~~~~~~la~~~l~~g~~e~A~~iL-~~----lP~~~~~~----  201 (304)
T COG3118         137 ALAEAKELIEAEDFGEAAPLLKQALQAAPEN------SEAKLLLAECLLAAGDVEAAQAIL-AA----LPLQAQDK----  201 (304)
T ss_pred             HHHHhhhhhhccchhhHHHHHHHHHHhCccc------chHHHHHHHHHHHcCChHHHHHHH-Hh----Ccccchhh----
Confidence            3456777889999999999999999988443      778889999999999999997777 32    12111100    


Q ss_pred             HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHH------HHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHH
Q 000742          111 ACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAM------KLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEE  184 (1313)
Q Consensus       111 a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al------~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~  184 (1313)
                      .+..                  ....++.+.+|-      .+-.....         .|+...+-+.+|..|...|++++
T Consensus       202 ~~~~------------------l~a~i~ll~qaa~~~~~~~l~~~~aa---------dPdd~~aa~~lA~~~~~~g~~e~  254 (304)
T COG3118         202 AAHG------------------LQAQIELLEQAAATPEIQDLQRRLAA---------DPDDVEAALALADQLHLVGRNEA  254 (304)
T ss_pred             HHHH------------------HHHHHHHHHHHhcCCCHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHH
Confidence            0111                  000111111111      11111111         34557889999999999999999


Q ss_pred             HHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCC
Q 000742          185 AKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRM  224 (1313)
Q Consensus       185 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~  224 (1313)
                      |.+.+-..++....       .....+...+-.++...|.
T Consensus       255 Ale~Ll~~l~~d~~-------~~d~~~Rk~lle~f~~~g~  287 (304)
T COG3118         255 ALEHLLALLRRDRG-------FEDGEARKTLLELFEAFGP  287 (304)
T ss_pred             HHHHHHHHHHhccc-------ccCcHHHHHHHHHHHhcCC
Confidence            99988777766322       1122344445555555553

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.06  E-value=42  Score=40.42  Aligned_cols=101  Identities=14%  Similarity=0.061  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHH
Q 000742          209 SRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDAL  288 (1313)
Q Consensus       209 ~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~  288 (1313)
                      -.++.+-|.-.++..+|..|++.|...+...+.-......+.....++.+|..+.+.+.|.+++++|-+..|+..-....
T Consensus       354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~  433 (872)
T KOG4814|consen  354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLL  433 (872)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence            34566777888888999999999999988876544444558888999999999999999999999999888766544444


Q ss_pred             HHHHHHhHHHHHHHHHHHHHH
Q 000742          289 ASQIDQNIETVKKAIEVMDEL  309 (1313)
Q Consensus       289 ~~~~~~~lg~~~~a~~~~~~a  309 (1313)
                      +..+...-|.-.+|+......
T Consensus       434 ~~~~~~~E~~Se~AL~~~~~~  454 (872)
T KOG4814|consen  434 MLQSFLAEDKSEEALTCLQKI  454 (872)
T ss_pred             HHHHHHHhcchHHHHHHHHHH
Confidence            444444444555555544433

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=90.86  E-value=9.3  Score=45.50  Aligned_cols=189  Identities=13%  Similarity=0.024  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHH
Q 000742           70 TCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQT  149 (1313)
Q Consensus        70 ~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~  149 (1313)
                      ....+|..++.+|+|+-|...| +.+.+-+....-....+-++-..|.+...... .....-.-+....+++.|+..+.+
T Consensus       210 q~R~LAD~aFml~Dy~~A~s~Y-~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~-~~~~k~~~~~~~~~le~A~~~Y~~  287 (414)
T PF12739_consen  210 QMRRLADLAFMLRDYELAYSTY-RLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQ-SISAKIRKDEIEPYLENAYYTYLK  287 (414)
T ss_pred             HHHHHHHHHHHHccHHHHHHHH-HHHHHHHhhchhHHHHHhHHHHHHHHHHhcCC-CCccccccccHHHHHHHHHHHHHh
Confidence            3457999999999999999999 88887666555555555666666666554410 000001223566777777776666


Q ss_pred             hccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHh--hhhccCCCchHHHHHHHHHHHHH--HHcCCH
Q 000742          150 LKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEIC--NEEEVSEDDDGRSRLHHNLGNVY--MELRMW  225 (1313)
Q Consensus       150 ~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~lg~~y--~~~g~~  225 (1313)
                      .......    .......+....+.++...+.+.+|...+-++....  ...    ..-..+.++..+|.+|  ......
T Consensus       288 ~~~~~~~----~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l----~~~~~alllE~~a~~~~~~~~~~~  359 (414)
T PF12739_consen  288 SALPRCS----LPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDL----RPFGSALLLEQAAYCYASLRSNRP  359 (414)
T ss_pred             hhccccc----cccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhh----hhHhhHHHHHHHHHhhcccccCCC
Confidence            3211000    011345677777888888999988888777776552  111    0111455666667666  111000


Q ss_pred             HHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 000742          226 DKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQS  281 (1313)
Q Consensus       226 ~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~  281 (1313)
                      ..-..-             ....+.-+..-|.-|.+.|+...|..+|.+|+.+...
T Consensus       360 ~~~~~r-------------~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~  402 (414)
T PF12739_consen  360 SPGLTR-------------FRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG  402 (414)
T ss_pred             Cccchh-------------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence            000000             1122333445577888999999999999999998864

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.49  E-value=0.61  Score=33.83  Aligned_cols=32  Identities=28%  Similarity=0.445  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 000742          381 DSFLVIGESYQKLRKFNKAIKWYTKSWEMYKS  412 (1313)
Q Consensus       381 ~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~  412 (1313)
                      .+|..||.+-...++|++|+.-|++++++..+
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~   33 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEE   33 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            45666677777777777777777777766554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=89.79  E-value=54  Score=42.66  Aligned_cols=61  Identities=13%  Similarity=-0.102  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHHHH------HHHHHHHhCCchhhH-HHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 000742          347 IEKSSMIFAWLKHCEYAKR------KKRIASELCDKGKLS-DSFLVIGESYQKLRKFNKAIKWYTKSW  407 (1313)
Q Consensus       347 ~~~~~~~~~~~~A~~~~~~------a~~i~~~~~~~~~~a-~~~~~lg~~y~~~g~~~~A~~~~~kal  407 (1313)
                      +..|...|+.++|++.|+.      ++.++.++....... ..-..|+.-...++++-+|-+..+..+
T Consensus       959 al~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen  959 ALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred             HHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence            3344444555555544432      333444333332221 222456666667777777766655554

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=89.37  E-value=8.5  Score=39.77  Aligned_cols=62  Identities=10%  Similarity=0.092  Sum_probs=51.2

Q ss_pred             hhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 000742          377 GKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALD  441 (1313)
Q Consensus       377 ~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~  441 (1313)
                      -..+...+.+|..|. ..+.++|+..|-+++++.+.  +....+.++..||.+|.+.|++++|.-
T Consensus       138 l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~--~~~~n~eil~sLas~~~~~~~~e~AYi  199 (203)
T PF11207_consen  138 LETAELQYALATYYT-KRDPEKTIQLLLRALELSNP--DDNFNPEILKSLASIYQKLKNYEQAYI  199 (203)
T ss_pred             CCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence            356788888988777 67899999999999998763  224567889999999999999999864

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=89.17  E-value=37  Score=36.83  Aligned_cols=63  Identities=10%  Similarity=-0.084  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHH
Q 000742          212 HHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHY-RVQKYDEAILCYQKALNLA  279 (1313)
Q Consensus       212 ~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~kal~~~  279 (1313)
                      +..+|.++...|+|++++.++++++...+.     ....-...++.+|. ..|....+.+.+.......
T Consensus         4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~e-----Lt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~   67 (236)
T PF00244_consen    4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPE-----LTEEERNLLSVAYKNVIGSRRASWRILSSIEQKE   67 (236)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHTSS--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCC-----CCHHHHHHHHHHHHhccccchHHHHhhhhHhhhh
Confidence            467899999999999999999999988432     23333444445552 3445555555554444333

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>smart00028 TPR Tetratricopeptide repeats

Probab=89.16  E-value=0.37  Score=32.75  Aligned_cols=29  Identities=28%  Similarity=0.743  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 000742          381 DSFLVIGESYQKLRKFNKAIKWYTKSWEM  409 (1313)
Q Consensus       381 ~~~~~lg~~y~~~g~~~~A~~~~~kal~l  409 (1313)
                      .++..+|.+|..++++++|+.+|++++++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            34566777777777777777777776654

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=88.96  E-value=3.1  Score=38.31  Aligned_cols=101  Identities=16%  Similarity=0.129  Sum_probs=59.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHh-chhh
Q 000742          172 IGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMEL----RMWDKSREHIEQDIIICKKI-EHCQ  246 (1313)
Q Consensus       172 la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~----g~~~~A~~~~~kal~~~~~~-~~~~  246 (1313)
                      .|..++..|++-+|++..+..+....+      .......+..-|.++..+    .+.+-=..|+.-+++-+.+. .-.+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~------~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp   75 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGE------DESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSP   75 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccC------CCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccCh
Confidence            356678889999999999999887543      332335666667777554    34443333444444333321 1123


Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 000742          247 GEAKGYINLGELHYRVQKYDEAILCYQKALNL  278 (1313)
Q Consensus       247 ~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~  278 (1313)
                      ..+..++.+|.-+-....|+++....++++.+
T Consensus        76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            55677777776655555566666665555543

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=88.82  E-value=58  Score=38.67  Aligned_cols=75  Identities=11%  Similarity=-0.057  Sum_probs=56.0

Q ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHH
Q 000742           16 RSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKH   95 (1313)
Q Consensus        16 ~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ka   95 (1313)
                      ++-++.+|.+..+  |+.+-.-+-.+ -++++.+.|++.+...+.      .+.++...........+|+...+.| .++
T Consensus        10 ~~rie~nP~di~s--w~~lire~qt~-~~~~~R~~YEq~~~~FP~------s~r~W~~yi~~El~skdfe~VEkLF-~RC   79 (656)
T KOG1914|consen   10 RERIEENPYDIDS--WSQLIREAQTQ-PIDKVRETYEQLVNVFPS------SPRAWKLYIERELASKDFESVEKLF-SRC   79 (656)
T ss_pred             HHHHhcCCccHHH--HHHHHHHHccC-CHHHHHHHHHHHhccCCC------CcHHHHHHHHHHHHhhhHHHHHHHH-HHH
Confidence            4445666766555  88887777665 999999999998776643      3667777777777888999999999 888


Q ss_pred             HHHHH
Q 000742           96 LELAK  100 (1313)
Q Consensus        96 l~l~~  100 (1313)
                      |.-.-
T Consensus        80 LvkvL   84 (656)
T KOG1914|consen   80 LVKVL   84 (656)
T ss_pred             HHHHh
Confidence            86443

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=88.82  E-value=16  Score=42.37  Aligned_cols=55  Identities=9%  Similarity=0.103  Sum_probs=42.2

Q ss_pred             hhhHHHHHHHHHHHHHhcCcHH----------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 000742            5 EMQMSEAKRAYRSAKEEGNRQE----------EARWANVIGDILKNRGEYVEALKWFRIDYDVSV   59 (1313)
Q Consensus         5 ~~~~~~A~~~l~~a~~~~~~~~----------~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~   59 (1313)
                      ...|+++.+.|..++...++..          -+.++.+++.++..+|+++.|.+..++|+-...
T Consensus         7 s~~Y~~~q~~F~~~v~~~Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e   71 (360)
T PF04910_consen    7 SKAYQEAQEQFYAAVQSHDPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFE   71 (360)
T ss_pred             CHHHHHHHHHHHHHHHccCHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            4577888888888877654322          224578899999999999999999999987664

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway

Probab=88.73  E-value=7.3  Score=53.13  Aligned_cols=58  Identities=17%  Similarity=0.225  Sum_probs=50.8

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhc
Q 000742          206 DGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQ  263 (1313)
Q Consensus       206 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g  263 (1313)
                      ...++....+|..|...|.+.+|+++|.+|+...+..+|.-..+.++-.++.+..-.+
T Consensus       239 r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~  296 (1185)
T PF08626_consen  239 RCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLS  296 (1185)
T ss_pred             hhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHh
Confidence            3467788899999999999999999999999999999999999999988887765443

To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=88.49  E-value=13  Score=38.49  Aligned_cols=78  Identities=13%  Similarity=0.118  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH
Q 000742          182 LEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYR  261 (1313)
Q Consensus       182 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~  261 (1313)
                      -++|...|.++...        ..-..+...+.+|..|. ..+.++|+..+.+++++....  ....+.++..|+.+|..
T Consensus       122 d~~A~~~fL~~E~~--------~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~--~~~n~eil~sLas~~~~  190 (203)
T PF11207_consen  122 DQEALRRFLQLEGT--------PELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPD--DNFNPEILKSLASIYQK  190 (203)
T ss_pred             cHHHHHHHHHHcCC--------CCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHHH
Confidence            36777777665332        12234677888887776 678999999999999997643  23567889999999999


Q ss_pred             hcCHHHHHH
Q 000742          262 VQKYDEAIL  270 (1313)
Q Consensus       262 ~g~~~~A~~  270 (1313)
                      +|+++.|.-
T Consensus       191 ~~~~e~AYi  199 (203)
T PF11207_consen  191 LKNYEQAYI  199 (203)
T ss_pred             hcchhhhhh
Confidence            999998853

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.43  E-value=9.9  Score=37.86  Aligned_cols=151  Identities=13%  Similarity=0.048  Sum_probs=95.0

Q ss_pred             HHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccC
Q 000742           74 LGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKEN  153 (1313)
Q Consensus        74 lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~  153 (1313)
                      .|.-|+..+.-.++-+.| ..+|+++...+                             .++|+..|....+    .+..
T Consensus        45 ~gy~yw~~s~as~sgd~f-laAL~lA~~~k-----------------------------~d~Alaaf~~lek----tg~g   90 (221)
T COG4649          45 VGYTYWQTSRASKSGDAF-LAALKLAQENK-----------------------------TDDALAAFTDLEK----TGYG   90 (221)
T ss_pred             eeeehhcccccccchHHH-HHHHHHHHcCC-----------------------------chHHHHHHHHHHh----cCCC
Confidence            455677778888888888 88888876543                             3344433332211    1111


Q ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000742          154 PATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIE  233 (1313)
Q Consensus       154 ~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~  233 (1313)
                               ..-.-+.+..|.+..+.|+...|+.+|.++-....-     .....-.+...-+.++...|-|++-..-.+
T Consensus        91 ---------~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-----P~~~rd~ARlraa~lLvD~gsy~dV~srve  156 (221)
T COG4649          91 ---------SYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-----PQIGRDLARLRAAYLLVDNGSYDDVSSRVE  156 (221)
T ss_pred             ---------cchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-----cchhhHHHHHHHHHHHhccccHHHHHHHhh
Confidence                     122456778888899999999999999987654221     011122344455666677777776544332


Q ss_pred             HHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 000742          234 QDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALN  277 (1313)
Q Consensus       234 kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~  277 (1313)
                      ..-     ....+....+...||..-++.|++.+|...|.+...
T Consensus       157 pLa-----~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         157 PLA-----GDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             hcc-----CCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            211     122345667778889999999999999999987665

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=88.36  E-value=56  Score=37.95  Aligned_cols=191  Identities=15%  Similarity=0.026  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCc--hhHHHHHHHHHHHccChHHHHHHHHHHHHHHHH-HhcCHH
Q 000742           30 WANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHL--LPTCQSLGEVYLRLEHFKDALIYQVKKHLELAK-DASDLV  106 (1313)
Q Consensus        30 ~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~--~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~-~~~~~~  106 (1313)
                      .+...|.++..++++.+|.+.|.+..+.....   +..  -+++..+-.--+-+.+.+.-     +..+...+ ..+.. 
T Consensus         8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~---~f~lkeEvl~grilnAffl~nld~M-----e~~l~~l~~~~~~s-   78 (549)
T PF07079_consen    8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESS---PFLLKEEVLGGRILNAFFLNNLDLM-----EKQLMELRQQFGKS-   78 (549)
T ss_pred             HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcc---hHHHHHHHHhhHHHHHHHHhhHHHH-----HHHHHHHHHhcCCc-
Confidence            35577899999999999999999887765322   111  12332222222223344433     33332222 22211 


Q ss_pred             HHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHH--HHHHHHHHHHHHHcCCHHH
Q 000742          107 EQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEY--IDAHNNIGMLQMELDNLEE  184 (1313)
Q Consensus       107 ~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~--~~~~~~la~~y~~~g~~~~  184 (1313)
                        .......|...+..        +.|.+|++.+..--...+.....--.  ..+....  ...-...|..+...|+|.+
T Consensus        79 --~~l~LF~~L~~Y~~--------k~~~kal~~ls~w~~~~~~~~~~~Ld--~ni~~l~~df~l~~i~a~sLIe~g~f~E  146 (549)
T PF07079_consen   79 --AYLPLFKALVAYKQ--------KEYRKALQALSVWKEQIKGTESPWLD--TNIQQLFSDFFLDEIEAHSLIETGRFSE  146 (549)
T ss_pred             --hHHHHHHHHHHHHh--------hhHHHHHHHHHHHHhhhcccccchhh--hhHHHHhhHHHHHHHHHHHHHhcCCcch
Confidence              12234455555555        88888888776544332221111000  0000011  1122345778899999999


Q ss_pred             HHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHH
Q 000742          185 AKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYME----LRMWDKSREHIEQDIIICKK  241 (1313)
Q Consensus       185 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~kal~~~~~  241 (1313)
                      +...+++.+...-+-+-.-+....-.+...+|..|.-    ...++-+..||+.++-..++
T Consensus       147 gR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kk  207 (549)
T PF07079_consen  147 GRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKK  207 (549)
T ss_pred             HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHH
Confidence            9999999887543311101112222233345555532    22344455555555544443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=88.21  E-value=1.1  Score=32.62  Aligned_cols=33  Identities=15%  Similarity=0.246  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 000742          421 LAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEA  453 (1313)
Q Consensus       421 ~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~  453 (1313)
                      .+|..||.+-...++|++|+..|++++++.++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l   34 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEEL   34 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence            468889999999999999999999999997764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=87.69  E-value=4.2  Score=45.93  Aligned_cols=104  Identities=21%  Similarity=0.278  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHH
Q 000742           28 ARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVE  107 (1313)
Q Consensus        28 a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~  107 (1313)
                      -+++..+|..|...|+++.|++.|-++-+.....   .+.+..+.++-.+-..+|+|..-..|. .+|............
T Consensus       150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~---khvInm~ln~i~VSI~~~nw~hv~sy~-~~A~st~~~~~~~~q  225 (466)
T KOG0686|consen  150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSA---KHVINMCLNLILVSIYMGNWGHVLSYI-SKAESTPDANENLAQ  225 (466)
T ss_pred             HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch---HHHHHHHHHHHHHHHhhcchhhhhhHH-HHHHhCchhhhhHHH
Confidence            4568899999999999999999999988887433   566788888888888999999999988 888765311111000


Q ss_pred             --HHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHH
Q 000742          108 --QQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSA  143 (1313)
Q Consensus       108 --~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~A  143 (1313)
                        -+++...-|.+...+        ++|+.|.++|-.+
T Consensus       226 ~v~~kl~C~agLa~L~l--------kkyk~aa~~fL~~  255 (466)
T KOG0686|consen  226 EVPAKLKCAAGLANLLL--------KKYKSAAKYFLLA  255 (466)
T ss_pred             hcCcchHHHHHHHHHHH--------HHHHHHHHHHHhC
Confidence              112233334444444        7777777777654

>smart00028 TPR Tetratricopeptide repeats

Probab=87.69  E-value=0.47  Score=32.19  Aligned_cols=28  Identities=43%  Similarity=0.687  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 000742          251 GYINLGELHYRVQKYDEAILCYQKALNL  278 (1313)
Q Consensus       251 ~~~~la~~~~~~g~~~~A~~~~~kal~~  278 (1313)
                      ++..+|.++..++++++|+.++++++++
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            3445555555555555555555555543

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=87.33  E-value=3.2  Score=48.65  Aligned_cols=104  Identities=15%  Similarity=0.220  Sum_probs=76.3

Q ss_pred             HHHHHHHHH-HHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhh
Q 000742          168 AHNNIGMLQ-MELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQ  246 (1313)
Q Consensus       168 ~~~~la~~y-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~  246 (1313)
                      .+.+++..| ..+|+..+|...+..|+-....       ...-.++..+|.++.+.|...+|--.+..|+.-++      
T Consensus       214 ~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~-------h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~------  280 (886)
T KOG4507|consen  214 VLHNMASFYWRIKGEPYQAVECAMRALHFSSR-------HNKDIALLSLATVLHRAGFSADAAVILHAALDDAD------  280 (886)
T ss_pred             HHHHHHHHHHHHcCChhhhhHHHHHHhhhCCc-------ccccchhhhHHHHHHHcccccchhheeehhccCCc------
Confidence            344555554 4578999999999999887544       22334678899999999998888777766665544      


Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccC
Q 000742          247 GEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMED  284 (1313)
Q Consensus       247 ~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~  284 (1313)
                      ....-++.+|.++..+++|...+..|..+.+..|....
T Consensus       281 ~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q  318 (886)
T KOG4507|consen  281 FFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQ  318 (886)
T ss_pred             cccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhH
Confidence            44444888899999999999888888888877665443

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=87.14  E-value=1.4  Score=34.82  Aligned_cols=33  Identities=18%  Similarity=0.262  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcc
Q 000742          251 GYINLGELHYRVQKYDEAILCYQKALNLAQSME  283 (1313)
Q Consensus       251 ~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~  283 (1313)
                      .++.+|..++++|+|++|..+.+.++++.|...
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~   35 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR   35 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence            456677777777777777777777777776543

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.83  E-value=24  Score=35.24  Aligned_cols=149  Identities=9%  Similarity=-0.071  Sum_probs=94.7

Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 000742           36 DILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQL  115 (1313)
Q Consensus        36 ~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~l  115 (1313)
                      .-|++.+.-.++-..|..++++.                     ..++.++|+.-| ....+    .+.-.....+....
T Consensus        47 y~yw~~s~as~sgd~flaAL~lA---------------------~~~k~d~Alaaf-~~lek----tg~g~YpvLA~mr~  100 (221)
T COG4649          47 YTYWQTSRASKSGDAFLAALKLA---------------------QENKTDDALAAF-TDLEK----TGYGSYPVLARMRA  100 (221)
T ss_pred             eehhcccccccchHHHHHHHHHH---------------------HcCCchHHHHHH-HHHHh----cCCCcchHHHHHHH
Confidence            44667777777777777777665                     345667777766 33222    11111122445666


Q ss_pred             HHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhH
Q 000742          116 GRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEI  195 (1313)
Q Consensus       116 g~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~  195 (1313)
                      |.+....        |+...|+.+|.++-....   .+        .+..-.+...-|..+...|-|++-..-.+..   
T Consensus       101 at~~a~k--------gdta~AV~aFdeia~dt~---~P--------~~~rd~ARlraa~lLvD~gsy~dV~srvepL---  158 (221)
T COG4649         101 ATLLAQK--------GDTAAAVAAFDEIAADTS---IP--------QIGRDLARLRAAYLLVDNGSYDDVSSRVEPL---  158 (221)
T ss_pred             HHHHhhc--------ccHHHHHHHHHHHhccCC---Cc--------chhhHHHHHHHHHHHhccccHHHHHHHhhhc---
Confidence            6666654        888888888877643310   00        0111234555667778888888765443322   


Q ss_pred             hhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000742          196 CNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDII  237 (1313)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~  237 (1313)
                      .     .+..++...+...||..-++.|++.+|.+.|.+...
T Consensus       159 a-----~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         159 A-----GDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             c-----CCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            1     245778888999999999999999999999988766

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=86.70  E-value=12  Score=40.96  Aligned_cols=59  Identities=8%  Similarity=0.039  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 000742          210 RLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQK  274 (1313)
Q Consensus       210 ~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~k  274 (1313)
                      ..-..-+.-....|++.+|...|..++...+      ....+...++.+|...|+.+.|...+..
T Consensus       135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~------~~~~~~~~la~~~l~~g~~e~A~~iL~~  193 (304)
T COG3118         135 EEALAEAKELIEAEDFGEAAPLLKQALQAAP------ENSEAKLLLAECLLAAGDVEAAQAILAA  193 (304)
T ss_pred             HHHHHHhhhhhhccchhhHHHHHHHHHHhCc------ccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence            3456667777888888888888888888876      4567778888888888888888776654

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=86.67  E-value=0.73  Score=30.26  Aligned_cols=20  Identities=45%  Similarity=0.669  Sum_probs=8.5

Q ss_pred             CccEEEccCCC-CChHHHHHH
Q 000742         1087 GILELNLGGNP-IMKEGANAL 1106 (1313)
Q Consensus      1087 ~L~~L~Ls~N~-i~~~~~~~l 1106 (1313)
                      .|++|+|++|. |+|.|+..+
T Consensus         3 ~L~~L~l~~C~~itD~gl~~l   23 (26)
T smart00367        3 NLRELDLSGCTNITDEGLQAL   23 (26)
T ss_pred             CCCEeCCCCCCCcCHHHHHHH
Confidence            34444444443 444444433

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=86.52  E-value=38  Score=39.32  Aligned_cols=157  Identities=13%  Similarity=0.023  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhcc--------C--CCCCc----chhhHHHHHHHHHHHHH
Q 000742          110 RACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKE--------N--PATSR----SSFLKEYIDAHNNIGML  175 (1313)
Q Consensus       110 ~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~--------~--~~~~~----~~~~p~~~~~~~~la~~  175 (1313)
                      .++..++.++..+        |+++.|.+..++|+-.++..-.        .  ....+    .........+.+.....
T Consensus        41 dtLlqls~v~~~~--------gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~  112 (360)
T PF04910_consen   41 DTLLQLSEVYRQQ--------GDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS  112 (360)
T ss_pred             HHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence            6788999999988        8999999999998877653111        0  00000    11234566777888888


Q ss_pred             HHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHH
Q 000742          176 QMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINL  255 (1313)
Q Consensus       176 y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~l  255 (1313)
                      ..+.|-+..|+++.+-.+.+.+.    + +|  ..+.+.+-....+.++|+--++.++.......+. -....+..-+..
T Consensus       113 L~~RG~~rTAlE~~KlLlsLdp~----~-DP--~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~-~~~~lPn~a~S~  184 (360)
T PF04910_consen  113 LGRRGCWRTALEWCKLLLSLDPD----E-DP--LGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN-WLSLLPNFAFSI  184 (360)
T ss_pred             HHhcCcHHHHHHHHHHHHhcCCC----C-Cc--chhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh-hhhhCccHHHHH
Confidence            89999999999999999998544    1 22  2344555556667788887777777655421100 001233456777


Q ss_pred             HHHHHHhcCH---------------HHHHHHHHHHHHHHHHc
Q 000742          256 GELHYRVQKY---------------DEAILCYQKALNLAQSM  282 (1313)
Q Consensus       256 a~~~~~~g~~---------------~~A~~~~~kal~~~~~~  282 (1313)
                      +.+++..++-               ++|...+.+|+...|..
T Consensus       185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v  226 (360)
T PF04910_consen  185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV  226 (360)
T ss_pred             HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence            7788888777               88999999999888753

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>smart00101 14_3_3 14-3-3 homologues

Probab=86.49  E-value=53  Score=35.63  Aligned_cols=189  Identities=14%  Similarity=0.085  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHc-cChHHHHHHHHHHHHHHHH-HhcCHHHH
Q 000742           31 ANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRL-EHFKDALIYQVKKHLELAK-DASDLVEQ  108 (1313)
Q Consensus        31 ~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~-g~~~~A~~~~~~kal~l~~-~~~~~~~~  108 (1313)
                      +..+|.+..+.++|++.+.+.+++.+...   +.....+-.+.+..+|... |....+...+ .. ++... ..+...  
T Consensus         4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~---~~eLt~EERnLLSvayKn~i~~~R~s~R~i-~s-ie~ke~~~~~~~--   76 (244)
T smart00101        4 NVYMAKLAEQAERYEEMVEFMEKVAKTVD---SEELTVEERNLLSVAYKNVIGARRASWRII-SS-IEQKEESRGNED--   76 (244)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhhcC---CccCCHHHHHHHHHHHhhhhcccHHHHHHH-hH-HHHhhhccCchH--
Confidence            34678888899999999999999877521   1122234455666666543 6666666665 43 22221 111111  


Q ss_pred             HHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCC---CcchhhHHHHHHHHHHHHHHHHc---CCH
Q 000742          109 QRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPAT---SRSSFLKEYIDAHNNIGMLQMEL---DNL  182 (1313)
Q Consensus       109 a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~---~~~~~~p~~~~~~~~la~~y~~~---g~~  182 (1313)
                         ...+..-|..         .=-++-.......+.+..+.--+...   .+.-|....+..|..++.+....   .-.
T Consensus        77 ---~~~~~~~yr~---------kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~  144 (244)
T smart00101       77 ---HVASIKEYRG---------KIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAA  144 (244)
T ss_pred             ---HHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence               1122222221         11123344556666666554332211   11223344455555555543221   125


Q ss_pred             HHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHH
Q 000742          183 EEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYM-ELRMWDKSREHIEQDIIIC  239 (1313)
Q Consensus       183 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~-~~g~~~~A~~~~~kal~~~  239 (1313)
                      ++|.+.|++|++++... ....+|.......|.+..|+ -+++.++|.+..++|+.-+
T Consensus       145 ~~a~~aY~~A~e~a~~~-L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A  201 (244)
T smart00101      145 ENTLVAYKSAQDIALAE-LPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA  201 (244)
T ss_pred             HHHHHHHHHHHHHHHcc-CCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            68999999999987651 13445655556666665554 4699999998888776654

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.39  E-value=7.8  Score=33.12  Aligned_cols=28  Identities=14%  Similarity=0.350  Sum_probs=20.7

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcCChh
Q 000742          430 LDSNGDWAGALDAFQEGYRIAVEANLPS  457 (1313)
Q Consensus       430 y~~~g~~~~A~~~~~kAl~i~~~~~~~~  457 (1313)
                      -...|+|++|+.+|.+|++.+....++.
T Consensus        16 eD~~gny~eA~~lY~~ale~~~~ekn~~   43 (75)
T cd02680          16 EDEKGNAEEAIELYTEAVELCINTSNET   43 (75)
T ss_pred             hhHhhhHHHHHHHHHHHHHHHHHhcChh
Confidence            3467889999999999998876644443

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=86.35  E-value=28  Score=39.68  Aligned_cols=122  Identities=16%  Similarity=0.201  Sum_probs=81.5

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHH
Q 000742           93 KKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNI  172 (1313)
Q Consensus        93 ~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~l  172 (1313)
                      +.-++-++...-....-+++..+|.-|..-        |+++.|++.|-++-.++....            ..+..+.++
T Consensus       134 ~~eLk~yK~n~iKEsiRra~~Dl~dhy~~c--------G~l~~Alr~YsR~RdYCTs~k------------hvInm~ln~  193 (466)
T KOG0686|consen  134 DNELKSYKDNLIKESIRRALEDLGDHYLDC--------GQLDNALRCYSRARDYCTSAK------------HVINMCLNL  193 (466)
T ss_pred             HHHHHHhhcchhhHHHHHHHHHHHHHHHHh--------ccHHHHHhhhhhhhhhhcchH------------HHHHHHHHH
Confidence            444444444444555668889999999976        999999999999888876542            557888888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000742          173 GMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQD  235 (1313)
Q Consensus       173 a~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~ka  235 (1313)
                      -.+-...|+|-.-..+..+|........ .......+.+...-|.+...+++|..|.++|-.+
T Consensus       194 i~VSI~~~nw~hv~sy~~~A~st~~~~~-~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~  255 (466)
T KOG0686|consen  194 ILVSIYMGNWGHVLSYISKAESTPDANE-NLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLA  255 (466)
T ss_pred             HHHHHhhcchhhhhhHHHHHHhCchhhh-hHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            8888999999998888888876521100 0001111223444555556666777777776544

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=85.91  E-value=0.84  Score=29.97  Aligned_cols=24  Identities=21%  Similarity=0.263  Sum_probs=19.5

Q ss_pred             CCCcCEEEecCCC-CCHHHHHHHHH
Q 000742          857 HKTVALLDLSHNL-LGNGTMEKLQQ  880 (1313)
Q Consensus       857 ~~~L~~L~Ls~n~-l~~~~~~~L~~  880 (1313)
                      ++.|+.|+|++|. |+|.++..|++
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~~   25 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALAK   25 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence            4678999999986 89988887764

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=85.82  E-value=11  Score=34.75  Aligned_cols=103  Identities=13%  Similarity=0.142  Sum_probs=65.3

Q ss_pred             HHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCc---chhhHHHHHHHHHHHHHHHHHh
Q 000742           74 LGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDD---DHYSIRNAKKYFKSAMKLAQTL  150 (1313)
Q Consensus        74 lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~---~~~~~~~A~~~~~~Al~l~~~~  150 (1313)
                      .|.-++..|++-+|++.. +..+....+..+..   ..+..-|.++..+....++   +..-.-.|++.|.++..+    
T Consensus         2 ~A~~~~~rGnhiKAL~ii-ed~i~~h~~~~~~~---~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L----   73 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEII-EDLISRHGEDESSW---LLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL----   73 (111)
T ss_pred             hHHHHHHccCHHHHHHHH-HHHHHHccCCCchH---HHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc----
Confidence            466788899999999999 88887766655422   3455666666655322211   111223455555555555    


Q ss_pred             ccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhH
Q 000742          151 KENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEI  195 (1313)
Q Consensus       151 ~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~  195 (1313)
                                 .|.-+..++.+|.-+.....|+++....++++.+
T Consensus        74 -----------sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   74 -----------SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             -----------ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence                       3456778888887776666777777777777665

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.22  E-value=4.9  Score=34.28  Aligned_cols=34  Identities=9%  Similarity=0.119  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 000742          420 ALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEA  453 (1313)
Q Consensus       420 ~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~  453 (1313)
                      +..+...|.-+.+.|++++|+.+|++|++...+.
T Consensus         6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~   39 (75)
T cd02682           6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQI   39 (75)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            4446666777889999999999999999987653

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.21  E-value=39  Score=37.50  Aligned_cols=51  Identities=14%  Similarity=-0.060  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHh
Q 000742           48 LKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDA  102 (1313)
Q Consensus        48 l~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~  102 (1313)
                      -..|+++.+..++...   ....-..-|.++...++|.+....+ ..+-+..+..
T Consensus        41 ~~~y~Q~~q~~kk~~~---~il~~L~~Gl~a~~~~dya~S~~~l-dAae~~~Kqq   91 (449)
T COG3014          41 KKAYEQSKQFTKKKKN---ALLWDLQNGLSALYARDYATSLGVL-DAAEQRFKQQ   91 (449)
T ss_pred             hhHHHHHHHhhhhhhH---HHHHhhhhhHHHHHhhhHHHhhhHH-HHHHHHHhhh
Confidence            3445555555543311   1122235677777778888777776 5555444443

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=85.16  E-value=66  Score=35.52  Aligned_cols=48  Identities=21%  Similarity=0.247  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000742          136 AKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRG  192 (1313)
Q Consensus       136 A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~a  192 (1313)
                      -....++|++.. +....+        -..+..+..+|..|.+.|++.+|..+|-.+
T Consensus        69 r~~fi~~ai~WS-~~~~~~--------~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~  116 (260)
T PF04190_consen   69 RKKFIKAAIKWS-KFGSYK--------FGDPELHHLLAEKLWKEGNYYEAERHFLLG  116 (260)
T ss_dssp             HHHHHHHHHHHH-HTSS-T--------T--HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred             HHHHHHHHHHHH-ccCCCC--------CCCHHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence            445566666666 222211        145677888888888888887777776544

; PDB: 3LKU_E 2WPV_G.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=84.74  E-value=18  Score=41.19  Aligned_cols=113  Identities=14%  Similarity=0.128  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCC---------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000742          165 YIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSED---------DDGRSRLHHNLGNVYMELRMWDKSREHIEQD  235 (1313)
Q Consensus       165 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~---------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~ka  235 (1313)
                      +..+...=|..++++++|..|.--|..|++++.+-...+.         ......+-..+..||..+++.+.|+.+..+.
T Consensus       175 wl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrs  254 (569)
T PF15015_consen  175 WLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRS  254 (569)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhh
Confidence            4455566677888899999999999999998776321111         1123445677899999999999999999999


Q ss_pred             HHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcc
Q 000742          236 IIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSME  283 (1313)
Q Consensus       236 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~  283 (1313)
                      +.+.|      ....-+..-|.++..+.+|.+|-+.+--|.-++--.+
T Consensus       255 I~lnP------~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g  296 (569)
T PF15015_consen  255 INLNP------SYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSG  296 (569)
T ss_pred             hhcCc------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            98876      5666677778899999999999888777766654444

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=84.45  E-value=70  Score=35.28  Aligned_cols=104  Identities=13%  Similarity=0.014  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChH-HHHHHHHHHHHHHHHHhcCHHH
Q 000742           29 RWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFK-DALIYQVKKHLELAKDASDLVE  107 (1313)
Q Consensus        29 ~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~-~A~~~~~~kal~l~~~~~~~~~  107 (1313)
                      ..++.=+..+.+.|++..|.+...-.++...+...... ......++.++...+.-+ +-.++. ++|++..........
T Consensus        11 dLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~-~~~~~rl~~l~~~~~~~~p~r~~fi-~~ai~WS~~~~~~~G   88 (260)
T PF04190_consen   11 DLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVD-EESIARLIELISLFPPEEPERKKFI-KAAIKWSKFGSYKFG   88 (260)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---S-HHHHHHHHHHHHHS-TT-TTHHHHH-HHHHHHHHTSS-TT-
T ss_pred             HHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCCcchHHHHH-HHHHHHHccCCCCCC
Confidence            33556667777888888888877777777666433322 233456777776665444 345566 888888844344445


Q ss_pred             HHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHH
Q 000742          108 QQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKS  142 (1313)
Q Consensus       108 ~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~  142 (1313)
                      ....+..+|..|...        +++.+|..+|-.
T Consensus        89 dp~LH~~~a~~~~~e--------~~~~~A~~Hfl~  115 (260)
T PF04190_consen   89 DPELHHLLAEKLWKE--------GNYYEAERHFLL  115 (260)
T ss_dssp             -HHHHHHHHHHHHHT--------T-HHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHhh--------ccHHHHHHHHHh
Confidence            557788999999876        778777777643

; PDB: 3LKU_E 2WPV_G.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=84.33  E-value=55  Score=37.47  Aligned_cols=129  Identities=9%  Similarity=-0.087  Sum_probs=85.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHH
Q 000742          131 YSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSR  210 (1313)
Q Consensus       131 ~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  210 (1313)
                      .-.+..+..|++|++..               |.....+..+-..+.+..+.++..+-+++++...+.      ......
T Consensus        45 a~~E~klsilerAL~~n---------------p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~------~~~LW~  103 (321)
T PF08424_consen   45 ALAERKLSILERALKHN---------------PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG------SPELWR  103 (321)
T ss_pred             HHHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC------ChHHHH
Confidence            34566677888888771               111233444444445666778888888888887432      333333


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhch------------hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 000742          211 LHHNLGNVYMELRMWDKSREHIEQDIIICKKIEH------------CQGEAKGYINLGELHYRVQKYDEAILCYQKALNL  278 (1313)
Q Consensus       211 ~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~  278 (1313)
                      .|...-......-.++.....|.+++........            ......++..+.......|..+.|+..++..+++
T Consensus       104 ~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~  183 (321)
T PF08424_consen  104 EYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEF  183 (321)
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence            4433333334455788999999999988776532            2345667778888888999999999999999987


Q ss_pred             HH
Q 000742          279 AQ  280 (1313)
Q Consensus       279 ~~  280 (1313)
                      .-
T Consensus       184 n~  185 (321)
T PF08424_consen  184 NF  185 (321)
T ss_pred             Hc
Confidence            64

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=84.04  E-value=21  Score=42.58  Aligned_cols=47  Identities=15%  Similarity=0.156  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHH
Q 000742          166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSR  229 (1313)
Q Consensus       166 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~  229 (1313)
                      ...|..||.....+|+++-|.+.|+++-..                 ..|..+|...|+.++=.
T Consensus       347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~-----------------~~L~lLy~~~g~~~~L~  393 (443)
T PF04053_consen  347 PEKWKQLGDEALRQGNIELAEECYQKAKDF-----------------SGLLLLYSSTGDREKLS  393 (443)
T ss_dssp             HHHHHHHHHHHHHTTBHHHHHHHHHHCT-H-----------------HHHHHHHHHCT-HHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhhcCc-----------------cccHHHHHHhCCHHHHH
Confidence            357888888888888888888888877443                 34556666777654433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=83.69  E-value=1.5  Score=34.64  Aligned_cols=34  Identities=21%  Similarity=0.183  Sum_probs=28.7

Q ss_pred             hHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhc
Q 000742           69 PTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDAS  103 (1313)
Q Consensus        69 ~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~  103 (1313)
                      +.++.+|..++++|+|++|..+. +.++++.|.+.
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~-~~lL~~eP~N~   35 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYC-DALLEIEPDNR   35 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHH-HHHHHHTTS-H
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHH-HHHHhhCCCcH
Confidence            46788999999999999999999 99999987764

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=82.48  E-value=23  Score=42.35  Aligned_cols=101  Identities=17%  Similarity=0.169  Sum_probs=61.6

Q ss_pred             HHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHH
Q 000742          177 MELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLG  256 (1313)
Q Consensus       177 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la  256 (1313)
                      .+.|+++.|.+..       ++.   +    ....|..||......|+++-|.++|+++-..              ..|.
T Consensus       329 l~lg~L~~A~~~a-------~~~---~----~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~--------------~~L~  380 (443)
T PF04053_consen  329 LQLGNLDIALEIA-------KEL---D----DPEKWKQLGDEALRQGNIELAEECYQKAKDF--------------SGLL  380 (443)
T ss_dssp             HHCT-HHHHHHHC-------CCC---S----THHHHHHHHHHHHHTTBHHHHHHHHHHCT-H--------------HHHH
T ss_pred             HhcCCHHHHHHHH-------Hhc---C----cHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc--------------cccH
Confidence            4457777776543       321   1    2348999999999999999999999887554              3355


Q ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHH
Q 000742          257 ELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELK  310 (1313)
Q Consensus       257 ~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~  310 (1313)
                      .+|...|+.+.    +++..+++...++.. ..-..+.-+|++.+.+..+.+..
T Consensus       381 lLy~~~g~~~~----L~kl~~~a~~~~~~n-~af~~~~~lgd~~~cv~lL~~~~  429 (443)
T PF04053_consen  381 LLYSSTGDREK----LSKLAKIAEERGDIN-IAFQAALLLGDVEECVDLLIETG  429 (443)
T ss_dssp             HHHHHCT-HHH----HHHHHHHHHHTT-HH-HHHHHHHHHT-HHHHHHHHHHTT
T ss_pred             HHHHHhCCHHH----HHHHHHHHHHccCHH-HHHHHHHHcCCHHHHHHHHHHcC
Confidence            66777777643    334444444433322 22335666788877777766554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=81.74  E-value=1.2e+02  Score=36.11  Aligned_cols=429  Identities=8%  Similarity=-0.004  Sum_probs=196.0

Q ss_pred             hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHH
Q 000742            7 QMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKD   86 (1313)
Q Consensus         7 ~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~   86 (1313)
                      -++++...|++....-|....+  +......-+...+|+.-.+.|.+++.-.-.    -+++..|  +..+....|+...
T Consensus        34 ~~~~~R~~YEq~~~~FP~s~r~--W~~yi~~El~skdfe~VEkLF~RCLvkvLn----lDLW~lY--l~YVR~~~~~~~~  105 (656)
T KOG1914|consen   34 PIDKVRETYEQLVNVFPSSPRA--WKLYIERELASKDFESVEKLFSRCLVKVLN----LDLWKLY--LSYVRETKGKLFG  105 (656)
T ss_pred             CHHHHHHHHHHHhccCCCCcHH--HHHHHHHHHHhhhHHHHHHHHHHHHHHHhh----HhHHHHH--HHHHHHHccCcch
Confidence            5778888888888887776666  666667777889999999999998865422    1223333  3334444555555


Q ss_pred             HHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHhc-cCCcchhhHHHHHHHHHHHHHH----HHHhccCCCCCcch
Q 000742           87 ALIYQVKKHLELAKDA-SDLVEQQRACTQLGRTYYEMFL-RSDDDHYSIRNAKKYFKSAMKL----AQTLKENPATSRSS  160 (1313)
Q Consensus        87 A~~~~~~kal~l~~~~-~~~~~~a~a~~~lg~~y~~l~~-~~~~~~~~~~~A~~~~~~Al~l----~~~~~~~~~~~~~~  160 (1313)
                      +.... -+|.+..-.. +........|...+......-. ..-.++.+.+.-...|++|+..    .+++-.+-     .
T Consensus       106 ~r~~m-~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY-----~  179 (656)
T KOG1914|consen  106 YREKM-VQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDY-----E  179 (656)
T ss_pred             HHHHH-HHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHH-----H
Confidence            55555 5555543322 1000011122222222211100 0000113455555666666532    00000000     0


Q ss_pred             hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhcc---------CCCchHHHHHHHHHHHHHHHcC------C-
Q 000742          161 FLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEV---------SEDDDGRSRLHHNLGNVYMELR------M-  224 (1313)
Q Consensus       161 ~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~~~~lg~~y~~~g------~-  224 (1313)
                      -...-......--.+-.....|..|...+++...+.+-+..         ..+.......|.++-..-...+      . 
T Consensus       180 ~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~  259 (656)
T KOG1914|consen  180 AFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTM  259 (656)
T ss_pred             HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccH
Confidence            00000001111111222334566666666665555433210         0111223344444433222211      0 


Q ss_pred             H-HHHHHHHHHHHHHHHHhch-hhhHHHHHHHHHHHHHHhcCHH-------HHHHHHHHHHHHHHHccChhHHHHHHHHh
Q 000742          225 W-DKSREHIEQDIIICKKIEH-CQGEAKGYINLGELHYRVQKYD-------EAILCYQKALNLAQSMEDEDALASQIDQN  295 (1313)
Q Consensus       225 ~-~~A~~~~~kal~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~-------~A~~~~~kal~~~~~~~~~~~~~~~~~~~  295 (1313)
                      . ..-.-.|++++....-..+ ..+.+..+...+.++-..|+.+       +|...|+.+++.....      ...+|..
T Consensus       260 ~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~------~~~Ly~~  333 (656)
T KOG1914|consen  260 LTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE------NKLLYFA  333 (656)
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH------HHHHHHH
Confidence            1 1222344555554441111 1122333445556666666654       4555555555433221      2335555


Q ss_pred             HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742          296 IETVKKAIEV---MDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASE  372 (1313)
Q Consensus       296 lg~~~~a~~~---~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~  372 (1313)
                      +.++.++...   +++....+..+..+.      ..++.         ..+-.+........-...|...+.++.+... 
T Consensus       334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~------~~~~t---------Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r-  397 (656)
T KOG1914|consen  334 LADYEESRYDDNKEKKVHEIYNKLLKIE------DIDLT---------LVYCQYMNFIRRAEGLKAARKIFKKAREDKR-  397 (656)
T ss_pred             HHhhHHHhcccchhhhhHHHHHHHHhhh------ccCCc---------eehhHHHHHHHHhhhHHHHHHHHHHHhhccC-
Confidence            5555554443   333333332222211      00100         0112222222333333444444444433211 


Q ss_pred             hCCchhhHHHHHHHHH-HHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742          373 LCDKGKLSDSFLVIGE-SYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAV  451 (1313)
Q Consensus       373 ~~~~~~~a~~~~~lg~-~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~  451 (1313)
                         .+.  .+|..-|. -|+-+++++-|...|+-.++.++   +.+..   -......+...++-..|...|++++.-  
T Consensus       398 ---~~h--hVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~---d~p~y---v~~YldfL~~lNdd~N~R~LFEr~l~s--  464 (656)
T KOG1914|consen  398 ---TRH--HVFVAAALMEYYCSKDKETAFRIFELGLKKFG---DSPEY---VLKYLDFLSHLNDDNNARALFERVLTS--  464 (656)
T ss_pred             ---Ccc--hhhHHHHHHHHHhcCChhHHHHHHHHHHHhcC---CChHH---HHHHHHHHHHhCcchhHHHHHHHHHhc--
Confidence               111  23322222 24568999999999999886653   32222   233445667889999999999999875  


Q ss_pred             HcCChhHHHHHHHhhHHHHHHhhcCHHHHHHHHHH
Q 000742          452 EANLPSVQLSALENMHYSHMIRFDNIEEARRLQHE  486 (1313)
Q Consensus       452 ~~~~~~~~~~al~~L~~~~~~~~~~~~~a~~~~e~  486 (1313)
                       .-.+.....++..+-. |....|+...+.++.+.
T Consensus       465 -~l~~~ks~~Iw~r~l~-yES~vGdL~si~~lekR  497 (656)
T KOG1914|consen  465 -VLSADKSKEIWDRMLE-YESNVGDLNSILKLEKR  497 (656)
T ss_pred             -cCChhhhHHHHHHHHH-HHHhcccHHHHHHHHHH
Confidence             1222334456665553 33445665555555443

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=81.68  E-value=1.1e+02  Score=35.51  Aligned_cols=237  Identities=9%  Similarity=0.052  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcc
Q 000742           50 WFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDD  129 (1313)
Q Consensus        50 ~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~  129 (1313)
                      .|++++....-.      .++|+.........++-++|++.. ++++...|...-......-+.+-...-.         
T Consensus       290 ~~~q~~~y~~~~------~evw~dys~Y~~~isd~q~al~tv-~rg~~~spsL~~~lse~yel~nd~e~v~---------  353 (660)
T COG5107         290 IHNQILDYFYYA------EEVWFDYSEYLIGISDKQKALKTV-ERGIEMSPSLTMFLSEYYELVNDEEAVY---------  353 (660)
T ss_pred             HHHHHHHHhhhh------HHHHHHHHHHHhhccHHHHHHHHH-HhcccCCCchheeHHHHHhhcccHHHHh---------


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHH--------HHHHHHHcCCHHHHHHHHHHHHhHhhhhcc
Q 000742          130 HYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNN--------IGMLQMELDNLEEAKKFLIRGLEICNEEEV  201 (1313)
Q Consensus       130 ~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~--------la~~y~~~g~~~~A~~~~~~al~~~~~~~~  201 (1313)
                       +-|++..+.+.+-......-..........+.|....-..+        .-..-.+..-.+.|...|.++-+.      
T Consensus       354 -~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~------  426 (660)
T COG5107         354 -GCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKE------  426 (660)
T ss_pred             -hhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhcc------


Q ss_pred             CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 000742          202 SEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQS  281 (1313)
Q Consensus       202 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~  281 (1313)
                       +.......++..+ .-|...|++.-|...|+-.+..++      +....-+..-..+...++-+.|...|++++....+
T Consensus       427 -~~~~h~vyi~~A~-~E~~~~~d~~ta~~ifelGl~~f~------d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~  498 (660)
T COG5107         427 -GIVGHHVYIYCAF-IEYYATGDRATAYNIFELGLLKFP------DSTLYKEKYLLFLIRINDEENARALFETSVERLEK  498 (660)
T ss_pred             -CCCCcceeeeHHH-HHHHhcCCcchHHHHHHHHHHhCC------CchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHH


Q ss_pred             ccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742          282 MEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRN  322 (1313)
Q Consensus       282 ~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~  322 (1313)
                      .     .+..+|..+-.+.-..+.+..+....+....+.++
T Consensus       499 ~-----q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ  534 (660)
T COG5107         499 T-----QLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ  534 (660)
T ss_pred             h-----hhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=81.67  E-value=13  Score=34.75  Aligned_cols=76  Identities=13%  Similarity=0.124  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000742          113 TQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRG  192 (1313)
Q Consensus       113 ~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~a  192 (1313)
                      ..+|......        +++-.|+-+|++|+.+.+++...............+....++|..+..+|+.+-.++|++-|
T Consensus         5 tllAd~a~~~--------~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlA   76 (140)
T PF10952_consen    5 TLLADQAFKE--------ADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLA   76 (140)
T ss_pred             HHHHHHHhhc--------ccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHH
Confidence            4555555544        88889999999999999888533322212222334567789999999999999999999888


Q ss_pred             HhHh
Q 000742          193 LEIC  196 (1313)
Q Consensus       193 l~~~  196 (1313)
                      -+..
T Consensus        77 SE~V   80 (140)
T PF10952_consen   77 SEKV   80 (140)
T ss_pred             HHHH
Confidence            6653

>PRK10941 hypothetical protein; Provisional

Probab=81.53  E-value=6.1  Score=43.50  Aligned_cols=77  Identities=9%  Similarity=-0.029  Sum_probs=68.0

Q ss_pred             CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcc
Q 000742          204 DDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSME  283 (1313)
Q Consensus       204 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~  283 (1313)
                      +.....+...++-.+|...++++.|+.+.+..+.+.|      +.+.-+...|.+|.++|.+..|..-++..++..|+.+
T Consensus       176 ~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P------~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp  249 (269)
T PRK10941        176 NIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDP------EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP  249 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch
Confidence            3455678889999999999999999999999999987      6777788899999999999999999999999998766


Q ss_pred             Chh
Q 000742          284 DED  286 (1313)
Q Consensus       284 ~~~  286 (1313)
                      +..
T Consensus       250 ~a~  252 (269)
T PRK10941        250 ISE  252 (269)
T ss_pred             hHH
Confidence            543

>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 []

Probab=81.32  E-value=16  Score=43.31  Aligned_cols=101  Identities=6%  Similarity=0.031  Sum_probs=67.0

Q ss_pred             HHHHhCCchhhHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000742          369 IASELCDKGKLSDSFLVIGESYQKL--RKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEG  446 (1313)
Q Consensus       369 i~~~~~~~~~~a~~~~~lg~~y~~~--g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kA  446 (1313)
                      +.-..+.-...+-++.+||.+-...  ..-..++..|.+|+...+...+. ....-|..+|-.|++.++|.+|+.+|-+|
T Consensus       266 ~lyd~ghl~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n-~HvYPYty~gg~~yR~~~~~eA~~~Wa~a  344 (618)
T PF05053_consen  266 LLYDMGHLARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNN-HHVYPYTYLGGYYYRHKRYREALRSWAEA  344 (618)
T ss_dssp             HHHHTTTTTT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT---SHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHhcCchhhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcC-CccccceehhhHHHHHHHHHHHHHHHHHH
Confidence            3334445555567777777765432  33567899999999998877653 34455788999999999999999999999


Q ss_pred             HHHHHHcCChhHHHHHHHhhHHHH
Q 000742          447 YRIAVEANLPSVQLSALENMHYSH  470 (1313)
Q Consensus       447 l~i~~~~~~~~~~~~al~~L~~~~  470 (1313)
                      -...++.+-......+|..+..+.
T Consensus       345 a~Vi~~YnY~reDeEiYKEfleIA  368 (618)
T PF05053_consen  345 ADVIRKYNYSREDEEIYKEFLEIA  368 (618)
T ss_dssp             HHHHTTSB--GGGHHHHHHHHHHH
T ss_pred             HHHHHHcccCccHHHHHHHHHHHH
Confidence            988877665555555666655544

; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=81.07  E-value=2.8  Score=45.10  Aligned_cols=59  Identities=10%  Similarity=0.085  Sum_probs=47.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742          173 GMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK  240 (1313)
Q Consensus       173 a~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~  240 (1313)
                      |.-....|+.++|...|+.|+++.+.         ...++..+|......++.-+|-.+|-+|+.+.+
T Consensus       123 A~~~~~~Gk~ekA~~lfeHAlalaP~---------~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP  181 (472)
T KOG3824|consen  123 AGRSRKDGKLEKAMTLFEHALALAPT---------NPQILIEMGQFREMHNEIVEADQCYVKALTISP  181 (472)
T ss_pred             HHHHHhccchHHHHHHHHHHHhcCCC---------CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence            33335568999999999999998544         467888889888888899999999999998876

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=80.89  E-value=1.6e+02  Score=37.01  Aligned_cols=237  Identities=10%  Similarity=0.047  Sum_probs=131.7

Q ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHH-HHccChHHHHHHHHH
Q 000742           15 YRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVY-LRLEHFKDALIYQVK   93 (1313)
Q Consensus        15 l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y-~~~g~~~~A~~~~~~   93 (1313)
                      ++.-..++......  +..|-.++...|++++-...-.++.++++-   .++++.-|. ....+ ...++-.++...| +
T Consensus       102 ~~ee~ai~~y~~~~--~v~Li~llrk~~dl~kl~~ar~~~~~~~pl---~~~lWl~Wl-~d~~~mt~s~~~~~v~~~~-e  174 (881)
T KOG0128|consen  102 LEEELAINSYKYAQ--MVQLIGLLRKLGDLEKLRQARLEMSEIAPL---PPHLWLEWL-KDELSMTQSEERKEVEELF-E  174 (881)
T ss_pred             HHHHhcccccchHH--HHHHHHHHHHhcchHHHHHHHHHHHHhcCC---ChHHHHHHH-HHHHhhccCcchhHHHHHH-H
Confidence            33333444444344  677888888999988766666666566532   122222222 12222 2236777788888 8


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHH
Q 000742           94 KHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIG  173 (1313)
Q Consensus        94 kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la  173 (1313)
                      +++.-+.......+.+.-....+..+...        ++++.-...|.+|+.-.......        .-....+|...-
T Consensus       175 kal~dy~~v~iw~e~~~y~~~~~~~~~~~--------~d~k~~R~vf~ral~s~g~~~t~--------G~~~we~~~E~e  238 (881)
T KOG0128|consen  175 KALGDYNSVPIWEEVVNYLVGFGNVAKKS--------EDYKKERSVFERALRSLGSHITE--------GAAIWEMYREFE  238 (881)
T ss_pred             HHhcccccchHHHHHHHHHHhcccccccc--------ccchhhhHHHHHHHhhhhhhhcc--------cHHHHHHHHHHH
Confidence            88866554443333333333333333322        77888888899888765443221        125567777777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHH--HHH-HHcCCHHHHHHHHHHHHHHHHHh-chhhhHH
Q 000742          174 MLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLG--NVY-MELRMWDKSREHIEQDIIICKKI-EHCQGEA  249 (1313)
Q Consensus       174 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg--~~y-~~~g~~~~A~~~~~kal~~~~~~-~~~~~~~  249 (1313)
                      ..|...-..++-+.++...+..-      -+.......|....  .++ ....+++.|.+-..+.+...... ...+...
T Consensus       239 ~~~l~n~~~~qv~a~~~~el~~~------~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~  312 (881)
T KOG0128|consen  239 VTYLCNVEQRQVIALFVRELKQP------LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKD  312 (881)
T ss_pred             HHHHHhHHHHHHHHHHHHHHhcc------chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            78877777788888888887762      12222233333332  222 23456666666655555554432 1122334


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 000742          250 KGYINLGELHYRVQKYDEAILCYQKALNLAQ  280 (1313)
Q Consensus       250 ~~~~~la~~~~~~g~~~~A~~~~~kal~~~~  280 (1313)
                      ..|..+-..-...|++..-...+++++.-.+
T Consensus       313 q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~  343 (881)
T KOG0128|consen  313 QEWMSYIDFEKKSGDPVRIQLIEERAVAEMV  343 (881)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHhcc
Confidence            4455555666677777666666666665443

>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains

Probab=80.65  E-value=1e+02  Score=35.82  Aligned_cols=158  Identities=18%  Similarity=0.080  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHHHHHhccCCcc--hhhHHHHHHHHHHHHHHHHHhccCCCCCc-----chhhHHHHHHHHHHHHHHHH
Q 000742          106 VEQQRACTQLGRTYYEMFLRSDDD--HYSIRNAKKYFKSAMKLAQTLKENPATSR-----SSFLKEYIDAHNNIGMLQME  178 (1313)
Q Consensus       106 ~~~a~a~~~lg~~y~~l~~~~~~~--~~~~~~A~~~~~~Al~l~~~~~~~~~~~~-----~~~~p~~~~~~~~la~~y~~  178 (1313)
                      .+.+.+++++|.+|..++......  ......|..+|++|...++-+.+......     ....+....++..+.....+
T Consensus       108 fE~~~vLfn~aa~~s~~a~~~~~~~~~~~~k~A~~~fq~AAG~F~~l~~~~~~~~~~~~~~Dl~~~~l~~l~~l~LAqAQ  187 (345)
T cd09034         108 YELLSILFNLAALASQLANEKLITGSEEDLKQAIKSLQKAAGYFEYLKEHVLPLPPDELPVDLTEAVLSALSLIMLAQAQ  187 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccCCHHHHHHHHHHHHHHHH
Confidence            455677888998888775432221  46788999999999887766554322111     24556666666666655444


Q ss_pred             cCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------HHHHhchhhh
Q 000742          179 LDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDII-----------ICKKIEHCQG  247 (1313)
Q Consensus       179 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~-----------~~~~~~~~~~  247 (1313)
                      .--+.+|       +.-- .    ......+......+.      .|++|...++..-.           ..-.......
T Consensus       188 e~~~~ka-------~~~~-~----~~~~liakLa~~~~~------~y~~A~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~  249 (345)
T cd09034         188 ECFLLKA-------EEDK-K----AKLSLLARLACEAAK------YYEEALKCLSGVDLETIKNIPKKWLLFLKWKKCIF  249 (345)
T ss_pred             HHHHHHH-------Hhcc-c----CcHHHHHHHHHHHHH------HHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHH
Confidence            3333333       2210 0    001111122111111      13333333332110           0000112234


Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 000742          248 EAKGYINLGELHYRVQKYDEAILCYQKALNLAQS  281 (1313)
Q Consensus       248 ~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~  281 (1313)
                      .+.+++..|..+...+++-+|+.+++.|......
T Consensus       250 ~a~a~~~~a~~~~e~~~~G~aia~L~~A~~~~~~  283 (345)
T cd09034         250 KALAYYYHGLKLDEANKIGEAIARLQAALELLKE  283 (345)
T ss_pred             HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH
Confidence            5667778888888888888999998888876554

This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=80.14  E-value=16  Score=34.18  Aligned_cols=69  Identities=16%  Similarity=0.178  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCc-----hh----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742          383 FLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNL-----EG----QALAKVNMGNVLDSNGDWAGALDAFQEGYRIAV  451 (1313)
Q Consensus       383 ~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~-----~~----~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~  451 (1313)
                      +..+|....+.+++-.|+-+|++|+.+..++...     .+    ......+||..+..+|+.+=.++|++-|-+.-.
T Consensus         4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vl   81 (140)
T PF10952_consen    4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVL   81 (140)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence            4567888889999999999999999998877421     11    133567899999999999999999998876443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1313
3tsr_E	457	X-Ray Structure Of Mouse Ribonuclease Inhibitor Com		6e-08
3sf4_A	406	Crystal Structure Of The Complex Between The Conser		5e-07
3sf4_A	406	Crystal Structure Of The Complex Between The Conser		1e-06
2bnh_A	457	Porcine Ribonuclease Inhibitor Length = 457		1e-06
4g2v_A	340	Structure Complex Of Lgn Binding With Frmpd1 Length		3e-06
4g2v_A	340	Structure Complex Of Lgn Binding With Frmpd1 Length		1e-05
3ro2_A	338	Structures Of The LgnNUMA COMPLEX Length = 338		3e-06
3ro2_A	338	Structures Of The LgnNUMA COMPLEX Length = 338		2e-05
4a1s_A	411	Crystallographic Structure Of The Pins:insc Complex		4e-06
1a4y_A	460	Ribonuclease Inhibitor-Angiogenin Complex Length =		9e-06
1z7x_W	461	X-Ray Structure Of Human Ribonuclease Inhibitor Com		1e-05
3ro3_A	164	Crystal Structure Of LgnMINSCUTEABLE COMPLEX Length		1e-04
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		4e-04
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		5e-04
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		6e-04

>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed With Mouse Ribonuclease 1 Length = 457

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 105/254 (41%), Gaps = 34/254 (13%)
Query: 922  LNLSGNRLTDACGSYLSTILKN--CKVLYSLNIENCSITSRTIQKVADALGAESTLAQLC 979
            L+L  N L D     +   L+N  CK+   L+++NC +T      +   L + STL +L 
Sbjct: 57   LSLRTNELGDGGVGLVLQGLQNPTCKI-QKLSLQNCGLTEAGCGILPGMLRSLSTLRELH 115
Query: 980  IGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRL----CQLAKTSC----- 1030
            +  N    G+A   LL +             GL+  +  +++L    C L  TSC     
Sbjct: 116  LNDNP--MGDAGLKLLCE-------------GLQDPQCRLEKLQLEYCNLTATSCEPLAS 160
Query: 1031 -------LTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVS 1083
                      L+L   +L   G   L + L   A +   L L  CG+ +         V+
Sbjct: 161  VLRVKADFKELVLSNNDLHEPGVRILCQGLKDSACQLESLKLENCGITAANCKDLCDVVA 220
Query: 1084 LVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSEND 1143
                + EL+L  N +   G  AL   L+ P C L+ L L +C +   G   L + L    
Sbjct: 221  SKASLQELDLSSNKLGNAGIAALCPGLLLPSCKLRTLWLWECDITAEGCKDLCRVLRAKQ 280
Query: 1144 TLEELNLADNASKE 1157
            +L+EL+LA N  K+
Sbjct: 281  SLKELSLASNELKD 294

>pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved Cell Polarity Proteins Inscuteable And Lgn Length = 406

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/254 (21%), Positives = 115/254 (45%), Gaps = 25/254 (9%)
Query: 43  EYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDA 102
           +Y +AL++   D  ++     +        +LG     L +F +A++   ++HL+++++ 
Sbjct: 62  DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVC-CQRHLDISREL 120
Query: 103 SDLVEQQRACTQLGRTYY------------EMFLRSDDDHYSIRNAKKYFKSAMKLAQTL 150
           +D V + RA   LG  Y+            ++    ++   +++ A  +++  + L   L
Sbjct: 121 NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL 180
Query: 151 KENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSR 210
            +  A  R         A  N+G     L N  +A     + L I  E     D     R
Sbjct: 181 GDRAAQGR---------AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE---FGDKAAERR 228
Query: 211 LHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAIL 270
            + NLGN Y+ L  ++ + E+ ++ +++ ++++    EA+   +LG  +  +Q Y++AI 
Sbjct: 229 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 288
Query: 271 CYQKALNLAQSMED 284
            + K L +AQ + D
Sbjct: 289 YHLKHLAIAQELND 302

>pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved Cell Polarity Proteins Inscuteable And Lgn Length = 406

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/320 (20%), Positives = 127/320 (39%), Gaps = 49/320 (15%)
Query: 202 SEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYR 261
           +ED    S ++  LGN Y  L  + K+ E+   D+ + + I    GEAK   NLG     
Sbjct: 40  TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV 99
Query: 262 VQKYDEAILCYQKALNLAQSMEDE------------------------------------ 285
           +  +DEAI+C Q+ L++++ + D+                                    
Sbjct: 100 LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEV 159
Query: 286 -DALASQIDQNIETVKKAIEVMDXXXXXXXXXXXXTRNMIIAKG----TSQERKYLLQQ- 339
            DAL + +D   E +     + D              + ++        + E++ L+ + 
Sbjct: 160 RDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 219
Query: 340 ---NASLDRLIEKSSMIFAWLKHCE----YAKRKKRIASELCDKGKLSDSFLVIGESYQK 392
               A+  R        + +L   E    Y K+   +A +L D+   + S   +G +Y  
Sbjct: 220 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 279
Query: 393 LRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVE 452
           L+ + KAI ++ K   + + + +  G+  A  ++GN   + G+   A+   ++   I+ E
Sbjct: 280 LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 339
Query: 453 ANLPSVQLSALENMHYSHMI 472
               S +L+A  N+    M+
Sbjct: 340 VGDKSGELTARLNLSDLQMV 359

>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor Length = 457

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 99/224 (44%), Gaps = 5/224 (2%)
Query: 947  LYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNA-ITNLLVKLDTLKS-F 1004
            L +L +ENC +T    + +   + ++++L +L +G N    G+A I  L   L +  S  
Sbjct: 197  LETLRLENCGLTPANCKDLCGIVASQASLRELDLGSNG--LGDAGIAELCPGLLSPASRL 254
Query: 1005 SELNLNGLKLSKPVVDRLCQ-LAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKL 1063
              L L    ++      LC+ L     L  L L    LG +G+  L ESL     +   L
Sbjct: 255  KTLWLWECDITASGCRDLCRVLQAKETLKELSLAGNKLGDEGARLLCESLLQPGCQLESL 314
Query: 1064 DLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLS 1123
             +  C L + C    +  ++    +LEL L  N +   G   L   L  P   L+VL L 
Sbjct: 315  WVKSCSLTAACCQHVSLMLTQNKHLLELQLSSNKLGDSGIQELCQALSQPGTTLRVLCLG 374
Query: 1124 KCQLGLAGVLQLIKALSENDTLEELNLADNASKELTLQQNLSSV 1167
             C++  +G   L   L  N +L EL+L++N   +  + Q L S+
Sbjct: 375  DCEVTNSGCSSLASLLLANRSLRELDLSNNCVGDPGVLQLLGSL 418

>pdb|4G2V|A Chain A, Structure Complex Of Lgn Binding With Frmpd1 Length = 340

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/254 (21%), Positives = 114/254 (44%), Gaps = 25/254 (9%)
Query: 43  EYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDA 102
           +Y +AL++   D  ++     +        +LG     L +F +A++   ++HL+++++ 
Sbjct: 60  DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIV-CCQRHLDISREL 118
Query: 103 SDLVEQQRACTQLGRTYY------------EMFLRSDDDHYSIRNAKKYFKSAMKLAQTL 150
           +D V + RA   LG  Y+            +     +D   +++ A   ++  + L   L
Sbjct: 119 NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL 178
Query: 151 KENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSR 210
            +  A  R         A  N+G     L N  +A     + L I  E     D     R
Sbjct: 179 GDRAAQGR---------AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE---FGDKAAERR 226
Query: 211 LHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAIL 270
            + NLGN Y+ L  ++ + E+ ++ +++ ++++    EA+   +LG  +  +Q Y++AI 
Sbjct: 227 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 286
Query: 271 CYQKALNLAQSMED 284
            + K L +AQ ++D
Sbjct: 287 YHLKHLAIAQELKD 300

>pdb|4G2V|A Chain A, Structure Complex Of Lgn Binding With Frmpd1 Length = 340

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 109/258 (42%), Gaps = 27/258 (10%)
Query: 202 SEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYR 261
           +ED    S ++  LGN Y  L  + K+ E+   D+ + + I    GEAK   NLG     
Sbjct: 38  TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV 97
Query: 262 VQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETV--KKAIEVMDXXXXXXXXXXXX 319
           +  +DEAI+C Q+ L++++ + D+   A  +  N+  V   K                  
Sbjct: 98  LGNFDEAIVCCQRHLDISRELNDKVGEARAL-YNLGNVYHAKGKSFGCPGPQDTGEFPED 156
Query: 320 TRNMIIAKGTSQERKYLLQQNASL-----DRLIEKSSMIFAWLKHCEY-----------A 363
            RN +      Q    L ++N SL     DR  +  +  F  L +  Y            
Sbjct: 157 VRNAL------QAAVDLYEENLSLVTALGDRAAQGRA--FGNLGNTHYLLGNFRDAVIAH 208
Query: 364 KRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAK 423
           +++  IA E  DK     ++  +G +Y  L +F  A ++Y K+  + + + +   +A + 
Sbjct: 209 EQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC 268
Query: 424 VNMGNVLDSNGDWAGALD 441
            ++GN      D+  A+D
Sbjct: 269 YSLGNTYTLLQDYEKAID 286

>pdb|3RO2|A Chain A, Structures Of The LgnNUMA COMPLEX Length = 338

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/254 (21%), Positives = 114/254 (44%), Gaps = 25/254 (9%)
Query: 43  EYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDA 102
           +Y +AL++   D  ++     +        +LG     L +F +A++   ++HL+++++ 
Sbjct: 58  DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIV-CCQRHLDISREL 116
Query: 103 SDLVEQQRACTQLGRTYY------------EMFLRSDDDHYSIRNAKKYFKSAMKLAQTL 150
           +D V + RA   LG  Y+            +     +D   +++ A   ++  + L   L
Sbjct: 117 NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL 176
Query: 151 KENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSR 210
            +  A  R         A  N+G     L N  +A     + L I  E     D     R
Sbjct: 177 GDRAAQGR---------AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE---FGDKAAERR 224
Query: 211 LHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAIL 270
            + NLGN Y+ L  ++ + E+ ++ +++ ++++    EA+   +LG  +  +Q Y++AI 
Sbjct: 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 284
Query: 271 CYQKALNLAQSMED 284
            + K L +AQ ++D
Sbjct: 285 YHLKHLAIAQELKD 298

>pdb|3RO2|A Chain A, Structures Of The LgnNUMA COMPLEX Length = 338

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 109/258 (42%), Gaps = 27/258 (10%)
Query: 202 SEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYR 261
           +ED    S ++  LGN Y  L  + K+ E+   D+ + + I    GEAK   NLG     
Sbjct: 36  TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV 95
Query: 262 VQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETV--KKAIEVMDXXXXXXXXXXXX 319
           +  +DEAI+C Q+ L++++ + D+   A  +  N+  V   K                  
Sbjct: 96  LGNFDEAIVCCQRHLDISRELNDKVGEARAL-YNLGNVYHAKGKSFGCPGPQDTGEFPED 154
Query: 320 TRNMIIAKGTSQERKYLLQQNASL-----DRLIEKSSMIFAWLKHCEY-----------A 363
            RN +      Q    L ++N SL     DR  +  +  F  L +  Y            
Sbjct: 155 VRNAL------QAAVDLYEENLSLVTALGDRAAQGRA--FGNLGNTHYLLGNFRDAVIAH 206
Query: 364 KRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAK 423
           +++  IA E  DK     ++  +G +Y  L +F  A ++Y K+  + + + +   +A + 
Sbjct: 207 EQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC 266
Query: 424 VNMGNVLDSNGDWAGALD 441
            ++GN      D+  A+D
Sbjct: 267 YSLGNTYTLLQDYEKAID 284

>pdb|4A1S|A Chain A, Crystallographic Structure Of The Pins:insc Complex Length = 411

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 109/253 (43%), Gaps = 38/253 (15%)
Query: 202 SEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYR 261
           +ED    S ++  LGN Y  L  ++K+ ++ + D+ + K +    GEAK   NLG     
Sbjct: 79  TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKV 138
Query: 262 VQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDXXXXXXXXXXXXTR 321
           + ++DEA +C ++ L LA+ + D             +  +A+  +               
Sbjct: 139 MGRFDEAAICCERHLTLARQLGDR-----------LSEGRALYNLG-------------- 173
Query: 322 NMIIAKGTSQERKYLLQQNASL--DRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKL 379
           N+  AKG     K+L Q+N     D + E      A  +  E+ +   ++  +L D+G  
Sbjct: 174 NVYHAKG-----KHLGQRNPGKFGDDVKE------ALTRAVEFYQENLKLMRDLGDRGAQ 222
Query: 380 SDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGA 439
             +   +G +Y  L  F  AI+ + +   + +  G+   +  A  N+GN     G +  A
Sbjct: 223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDA 282
Query: 440 LDAFQEGYRIAVE 452
            + ++    +AVE
Sbjct: 283 AEHYKRTLALAVE 295

>pdb|1A4Y|A Chain A, Ribonuclease Inhibitor-Angiogenin Complex Length = 460

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 129/313 (41%), Gaps = 22/313 (7%)
Query: 852  NALHTHKTVALLDLSHNLLGN-GTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQIC 910
            +AL  +  +A L+L  N LG+ G    LQ     SC+    L+L  +C   G        
Sbjct: 49   SALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK-IQKLSLQ-NCCLTGAG------ 100
Query: 911  ECPVLFTRLGVL------NLSGNRLTDACGSYLSTIL--KNCKVLYSLNIENCSITSRTI 962
             C VL + L  L      +LS N L DA    L   L    C+ L  L +E CS+++ + 
Sbjct: 101  -CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR-LEKLQLEYCSLSAASC 158
Query: 963  QKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKL-DTLKSFSELNLNGLKLSKPVVDR 1021
            + +A  L A+    +L +  N+ +    +  L   L D+      L L    ++      
Sbjct: 159  EPLASVLRAKPDFKELTVS-NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 217
Query: 1022 LCQL-AKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTA 1080
            LC + A  + L  L LG   LG  G  +L   L   +     L +  CG+ +        
Sbjct: 218  LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 277
Query: 1081 SVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALS 1140
             +     + EL+L GN +  EGA  L   L+ P C L+ L +  C    A        L+
Sbjct: 278  VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA 337
Query: 1141 ENDTLEELNLADN 1153
            +N  L EL +++N
Sbjct: 338  QNRFLLELQISNN 350

>pdb|1Z7X|W Chain W, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed With Ribonuclease I Length = 461

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 129/313 (41%), Gaps = 22/313 (7%)
Query: 852  NALHTHKTVALLDLSHNLLGN-GTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQIC 910
            +AL  +  +A L+L  N LG+ G    LQ     SC+    L+L  +C   G        
Sbjct: 50   SALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK-IQKLSLQ-NCCLTGAG------ 101
Query: 911  ECPVLFTRLGVL------NLSGNRLTDACGSYLSTIL--KNCKVLYSLNIENCSITSRTI 962
             C VL + L  L      +LS N L DA    L   L    C+ L  L +E CS+++ + 
Sbjct: 102  -CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR-LEKLQLEYCSLSAASC 159
Query: 963  QKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKL-DTLKSFSELNLNGLKLSKPVVDR 1021
            + +A  L A+    +L +  N+ +    +  L   L D+      L L    ++      
Sbjct: 160  EPLASVLRAKPDFKELTVS-NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 218
Query: 1022 LCQL-AKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTA 1080
            LC + A  + L  L LG   LG  G  +L   L   +     L +  CG+ +        
Sbjct: 219  LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278
Query: 1081 SVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALS 1140
             +     + EL+L GN +  EGA  L   L+ P C L+ L +  C    A        L+
Sbjct: 279  VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA 338
Query: 1141 ENDTLEELNLADN 1153
            +N  L EL +++N
Sbjct: 339  QNRFLLELQISNN 351

>pdb|3RO3|A Chain A, Crystal Structure Of LgnMINSCUTEABLE COMPLEX Length = 164

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 80/170 (47%), Gaps = 21/170 (12%)
Query: 73  SLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYS 132
           +LG  +  L +F+DA+I   ++ L +AK+  D   ++ A + LG  Y  +FL        
Sbjct: 14  NLGNTHYLLGNFRDAVIAH-EQRLLIAKEFGDKAAERIAYSNLGNAY--IFLGE------ 64
Query: 133 IRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRG 192
              A +Y+K  + LA+ LK+    ++S +         ++G     L + E+A  + ++ 
Sbjct: 65  FETASEYYKKTLLLARQLKDRAVEAQSCY---------SLGNTYTLLQDYEKAIDYHLKH 115
Query: 193 LEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKI 242
           L I  E    +D  G  R   +LGN Y  L   D++    E+ + I +++
Sbjct: 116 LAIAQE---LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 162

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 15/112 (13%)
Query: 167 DAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWD 226
           +A  N+G    +  + +EA ++  + LE+         D   +   +NLGN Y +   +D
Sbjct: 10  EAWYNLGNAYYKQGDYDEAIEYYQKALEL---------DPNNAEAWYNLGNAYYKQGDYD 60
Query: 227 KSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNL 278
           ++ E+ +      K +E     A+ + NLG  +Y+   YDEAI  YQKAL L
Sbjct: 61  EAIEYYQ------KALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 38/168 (22%)
Query: 111 ACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHN 170
           A   LG  YY+   + D D      A +Y++ A++L      +P ++ + +         
Sbjct: 3   AWYNLGNAYYK---QGDYDE-----AIEYYQKALEL------DPRSAEAWY--------- 39
Query: 171 NIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSRE 230
           N+G    +  + +EA ++  + LE+         D   +   +NLGN Y +   +D++ E
Sbjct: 40  NLGNAYYKQGDYDEAIEYYQKALEL---------DPRSAEAWYNLGNAYYKQGDYDEAIE 90
Query: 231 HIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNL 278
           + +      K +E     A+ + NLG  +Y+   YDEAI  YQKAL L
Sbjct: 91  YYQ------KALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 13/100 (13%)
Query: 213 HNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCY 272
           +NLGN Y +   +D++ E+ +      K +E     A+ + NLG  +Y+   YDEAI  Y
Sbjct: 13  YNLGNAYYKQGDYDEAIEYYQ------KALELYPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 273 QKALNLAQSMEDE-----DALASQ--IDQNIETVKKAIEV 305
           QKAL L  +  +      +A   Q   D+ IE  +KA+E+
Sbjct: 67  QKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1313
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-43
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-37
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-36
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-34
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	4e-34
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	6e-31
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	5e-16
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-11
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	9e-34
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-30
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-30
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-29
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-16
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	4e-12
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	8e-09
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	6e-08
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-33
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-30
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-30
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	6e-28
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-26
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	8e-23
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-31
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-30
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-29
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-25
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-20
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-11
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	4e-30
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-23
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	6e-17
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	3e-16
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	4e-14
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	7e-13
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	4e-12
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-09
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	6e-30
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	7e-25
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	6e-19
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	4e-10
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	1e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-28
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-26
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-24
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-26
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-23
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	4e-21
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	5e-11
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	8e-10
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-24
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	9e-21
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	3e-24
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	6e-21
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	3e-15
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	3e-14
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	8e-11
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	1e-10
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	1e-10
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	4e-10
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	2e-09
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	9e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-19
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	8e-16
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-12
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	8e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	8e-19
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	3e-10
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	2e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-18
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-11
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-18
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-15
4g1t_A	472	Interferon-induced protein with tetratricopeptide	5e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-17
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-13
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-17
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-17
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-14
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-16
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-14
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-14
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-12
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-15
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-15
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-13
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	9e-13
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-12
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-11
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-14
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-13
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-13
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-14
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-13
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-11
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	8e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-14
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-13
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-13
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-10
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-10
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-13
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	7e-12
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-10
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	1e-13
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	3e-13
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-13
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-12
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-13
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	6e-13
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-10
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	6e-05
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	2e-12
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	3e-06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-12
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-10
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-09
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	9e-08
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	9e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	5e-12
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	6e-12
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	5e-10
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	6e-12
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	9e-11
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	1e-08
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	2e-06
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	7e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	6e-12
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	9e-11
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	7e-06
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	7e-12
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	7e-12
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-11
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	7e-12
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	6e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-09
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-11
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-05
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	5e-11
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	5e-11
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-10
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-10
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	6e-10
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-10
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-10
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-07
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-10
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	2e-10
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	5e-10
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	1e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-10
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-10
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	7e-10
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	4e-09
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-09
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-09
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	4e-09
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	2e-06
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	4e-06
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	1e-04
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	7e-09
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	1e-08
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	2e-08
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	1e-07
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	7e-09
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	4e-06
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	7e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-08
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	5e-08
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	6e-08
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	1e-04
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	9e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-06
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-06
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	2e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	5e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-06
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	3e-06
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	4e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-04
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	7e-06
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	8e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	2e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-05
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	5e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-05
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	9e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-04
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	2e-04
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	2e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-04
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	5e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	5e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	6e-04

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  162 bits (413), Expect = 6e-43
 Identities = 101/474 (21%), Positives = 164/474 (34%), Gaps = 64/474 (13%)

Query: 803  LMKLYIECCKELSEAPNMKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKTVAL 862
            +  L I+C + LS+A   +LL  L   +    V + +C L +     + +AL  +  +A 
Sbjct: 5    IQSLDIQCEE-LSDARWAELLPLLQQCQ---VVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 863  LDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVL 922
            L+L  N LG+  +  + Q   +         L L            +         L  L
Sbjct: 61   LNLRSNELGDVGVHCVLQGLQTPSCKI--QKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 118

Query: 923  NLSGNRLTDACGSYLST-ILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIG 981
            +LS N L DA    L   +L     L  L +E CS+++ + + +A  L A+    +L + 
Sbjct: 119  HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 178

Query: 982  YNSPVTGNAITNLLVKL--DTLKSFSELNLNGLKLSKPVVDRLCQ-LAKTSCLTHLMLGC 1038
             N      A   +L +   D+      L L    ++      LC  +A  + L  L LG 
Sbjct: 179  NNDI--NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236

Query: 1039 TNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPI 1098
              LG  G  +L   L   +     L +  CG+ +         +     + EL+L GN +
Sbjct: 237  NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296

Query: 1099 MKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKEL 1158
              EGA  L   L+ P C L+ L +  C    A        L++N  L EL +++N     
Sbjct: 297  GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN----- 351

Query: 1159 TLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESA 1218
                 L       L   L     V + +                L               
Sbjct: 352  ----RLEDAGVRELCQGLGQPGSVLRVL---------------WLA-------------- 378

Query: 1219 ASGFDNSCTSSCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFSTQAVKTL 1272
                D   + S              L++ +     L+ LDLSNN      +  L
Sbjct: 379  ----DCDVSDSS----------CSSLAATLLANHSLRELDLSNNCLGDAGILQL 418

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  145 bits (367), Expect = 7e-37
 Identities = 66/321 (20%), Positives = 109/321 (33%), Gaps = 10/321 (3%)

Query: 834  EVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISS-CQNYVDL 892
            ++ +  C L   S  PL + L        L +S+N +    +  L Q    S CQ     
Sbjct: 146  KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQL---E 202

Query: 893  TLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLS-TILKNCKVLYSLN 951
             L L            +C        L  L L  N+L D   + L   +L     L +L 
Sbjct: 203  ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262

Query: 952  IENCSITSRTIQKVADALGAESTLAQLCIGYN--SPVTGNAITNLLVKLDTLKSFSELNL 1009
            I  C IT++    +   L A+ +L +L +  N         +   L  L+       L +
Sbjct: 263  IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL--LEPGCQLESLWV 320

Query: 1010 NGLKLSKPVVDRLCQ-LAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYC 1068
                 +          LA+   L  L +    L   G  +L + L         L L+ C
Sbjct: 321  KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380

Query: 1069 GLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLG 1128
             +  +      A++   H + EL+L  N +   G   L   +  P C L+ LVL      
Sbjct: 381  DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

Query: 1129 LAGVLQLIKALSENDTLEELN 1149
                 +L     +  +L  ++
Sbjct: 441  EEMEDRLQALEKDKPSLRVIS 461

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score =  142 bits (360), Expect = 2e-36
 Identities = 56/292 (19%), Positives = 121/292 (41%), Gaps = 24/292 (8%)

Query: 10  EAKRAYRSA--KEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHL 67
                +++A      + +  +   + +G+     G+Y +A+++ + D  ++         
Sbjct: 66  AGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125

Query: 68  LPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEM----- 122
             +  +LG     +  F +A I   ++HL LA+   D + + RA   LG  Y+       
Sbjct: 126 AKSSGNLGNTLKVMGRFDEAAICC-ERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLG 184

Query: 123 ----FLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQME 178
                   DD   ++  A ++++  +KL + L +  A  R+           N+G     
Sbjct: 185 QRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRA---------CGNLGNTYYL 235

Query: 179 LDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIII 238
           L + + A +     L I  E     D     R + NLGN ++ L  ++ + EH ++ + +
Sbjct: 236 LGDFQAAIEHHQERLRIARE---FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292

Query: 239 CKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALAS 290
             ++   + EA+   +LG  +  + +++ AI  + + L +AQ + D    A 
Sbjct: 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEAR 344

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score =  137 bits (347), Expect = 1e-34
 Identities = 53/336 (15%), Positives = 111/336 (33%), Gaps = 48/336 (14%)

Query: 131 YSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLI 190
            S            +         +                 G       +      F  
Sbjct: 22  GSGGGGTNSHDGNSQQGSGSDGGSSMCLE---------LALEGERLCNAGDCRAGVAFFQ 72

Query: 191 RGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAK 250
             ++   E     D    S ++  LGN Y  L  ++K+ ++ + D+ + K +    GEAK
Sbjct: 73  AAIQAGTE-----DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127

Query: 251 GYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELK 310
              NLG     + ++DEA +C ++ L LA+ + D  +    +  N+        V     
Sbjct: 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALY-NLGN------VYHAKG 180

Query: 311 KEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIA 370
           K             + +  ++  ++  +   +L                         + 
Sbjct: 181 KHLGQRNPGKFGDDVKEALTRAVEFYQE---NLK------------------------LM 213

Query: 371 SELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVL 430
            +L D+G    +   +G +Y  L  F  AI+ + +   + +  G+   +  A  N+GN  
Sbjct: 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSH 273

Query: 431 DSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENM 466
              G +  A + ++    +AVE     V+  +  ++
Sbjct: 274 IFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSL 309

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score =  135 bits (342), Expect = 4e-34
 Identities = 56/298 (18%), Positives = 106/298 (35%), Gaps = 22/298 (7%)

Query: 1   MGRDEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVK 60
           +G      +      +                + G+ L N G+    + +F+       +
Sbjct: 21  LGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE 80

Query: 61  YLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYY 120
            L    L      LG  Y  L  +  A+ Y  K  L LAK  +D + + ++   LG T  
Sbjct: 81  DLRT--LSAIYSQLGNAYFYLGDYNKAMQYH-KHDLTLAKSMNDRLGEAKSSGNLGNTLK 137

Query: 121 EMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRS--------SFLKEYIDAHNNI 172
            M             A    +  + LA+ L +  +  R+            +++   N  
Sbjct: 138 VM-----GRF---DEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPG 189

Query: 173 GMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHI 232
                  + L  A +F    L++  +     D   + R   NLGN Y  L  +  + EH 
Sbjct: 190 KFGDDVKEALTRAVEFYQENLKLMRD---LGDRGAQGRACGNLGNTYYLLGDFQAAIEHH 246

Query: 233 EQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALAS 290
           ++ + I ++      E +   NLG  H  + ++++A   Y++ L LA  + + +  A 
Sbjct: 247 QERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score =  126 bits (318), Expect = 6e-31
 Identities = 64/297 (21%), Positives = 120/297 (40%), Gaps = 62/297 (20%)

Query: 12  KRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLL--- 68
           K     AK   +R  EA+ +  +G+ LK  G + EA                E+HL    
Sbjct: 110 KHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICC------------ERHLTLAR 157

Query: 69  ---------PTCQSLGEVYLRL-----------------EHFKDALIYQVKKHLELAKDA 102
                        +LG VY                    E    A+ +  +++L+L +D 
Sbjct: 158 QLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY-QENLKLMRDL 216

Query: 103 SDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFL 162
            D   Q RAC  LG TYY +      D    + A ++ +  +++A+   +  A  R+   
Sbjct: 217 GDRGAQGRACGNLGNTYYLL-----GDF---QAAIEHHQERLRIAREFGDRAAERRA--- 265

Query: 163 KEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMEL 222
                 ++N+G   + L   E+A +   R L +  E     + +  ++  ++LGN Y  L
Sbjct: 266 ------NSNLGNSHIFLGQFEDAAEHYKRTLALAVE---LGEREVEAQSCYSLGNTYTLL 316

Query: 223 RMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLA 279
             ++ + E+  + + I +++    GEA+   +LG  H  +  ++ A+   ++ L LA
Sbjct: 317 HEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 80.8 bits (200), Expect = 5e-16
 Identities = 39/279 (13%), Positives = 80/279 (28%), Gaps = 40/279 (14%)

Query: 209 SRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEA 268
           S    N+ +  + L          + +       +            GE           
Sbjct: 10  SASAENVSS--LGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAG 67

Query: 269 ILCYQKALNLAQSMEDEDALAS-------------QIDQNIETVKKAIEVMDELKKEEQN 315
           +  +Q A+      ED   L++               ++ ++  K  + +   +      
Sbjct: 68  VAFFQAAIQAGT--EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125

Query: 316 LKKLTRNM-IIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASEL- 373
            K    N+    K   +  +             E+       L        +      L 
Sbjct: 126 AKSS-GNLGNTLKVMGRFDEAA--------ICCERH------LTLARQLGDRLSEGRALY 170

Query: 374 ------CDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMG 427
                   KGK                   +A+++Y ++ ++ + +G+   Q  A  N+G
Sbjct: 171 NLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLG 230

Query: 428 NVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENM 466
           N     GD+  A++  QE  RIA E    + +  A  N+
Sbjct: 231 NTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNL 269

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 65.8 bits (161), Expect = 3e-11
 Identities = 24/90 (26%), Positives = 48/90 (53%)

Query: 361 EYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQA 420
           E+ KR   +A EL ++   + S   +G +Y  L +FN AI+++ +   + + +G+  G+A
Sbjct: 284 EHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEA 343

Query: 421 LAKVNMGNVLDSNGDWAGALDAFQEGYRIA 450
            A  ++GN   + G    AL   ++  ++A
Sbjct: 344 RACWSLGNAHSAIGGHERALKYAEQHLQLA 373

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 51.1 bits (123), Expect = 2e-06
 Identities = 23/159 (14%), Positives = 48/159 (30%), Gaps = 15/159 (9%)

Query: 350 SSMIFAWLKHCEYAKRKK------RIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWY 403
           S+   + L                +  S       +     + GE           + ++
Sbjct: 12  SAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFF 71

Query: 404 TKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSAL 463
             + +      +L   +     +GN     GD+  A+   +    +A   N    +  + 
Sbjct: 72  QAAIQAGT--EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129

Query: 464 ENM--HYSHMIRFD----NIEEARRLQHEI-DKLKESKS 495
            N+      M RFD      E    L  ++ D+L E ++
Sbjct: 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 48.1 bits (115), Expect = 1e-05
 Identities = 13/78 (16%), Positives = 20/78 (25%), Gaps = 1/78 (1%)

Query: 377 GKLSD-SFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGD 435
           G +S  S      S   L         +  + +            L     G  L + GD
Sbjct: 4   GSMSSLSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGD 63

Query: 436 WAGALDAFQEGYRIAVEA 453
               +  FQ   +   E 
Sbjct: 64  CRAGVAFFQAAIQAGTED 81

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score =  134 bits (339), Expect = 9e-34
 Identities = 55/295 (18%), Positives = 124/295 (42%), Gaps = 27/295 (9%)

Query: 10  EAKRAYRSAKE--EGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHL 67
                + +A +    + +  +   + +G+      +Y +AL++   D  ++     +   
Sbjct: 27  AGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86

Query: 68  LPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEM----- 122
                +LG     L +F +A++   ++HL+++++ +D V + RA   LG  Y+       
Sbjct: 87  AKASGNLGNTLKVLGNFDEAIVCC-QRHLDISRELNDKVGEARALYNLGNVYHAKGKSFG 145

Query: 123 -------FLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGML 175
                      ++   +++ A  +++  + L   L +  A  R+           N+G  
Sbjct: 146 CPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRA---------FGNLGNT 196

Query: 176 QMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQD 235
              L N  +A     + L I  E     D     R + NLGN Y+ L  ++ + E+ ++ 
Sbjct: 197 HYLLGNFRDAVIAHEQRLLIAKE---FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 253

Query: 236 IIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALAS 290
           +++ ++++    EA+   +LG  +  +Q Y++AI  + K L +AQ + D      
Sbjct: 254 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGR 308

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score =  124 bits (314), Expect = 2e-30
 Identities = 59/316 (18%), Positives = 114/316 (36%), Gaps = 28/316 (8%)

Query: 167 DAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWD 226
                 G    +  +      F    +++      +ED    S ++  LGN Y  L  + 
Sbjct: 10  LELALEGERLCKSGDCRAGVSFFEAAVQVG-----TEDLKTLSAIYSQLGNAYFYLHDYA 64

Query: 227 KSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDED 286
           K+ E+   D+ + + I    GEAK   NLG     +  +DEAI+C Q+ L++++ + D+ 
Sbjct: 65  KALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV 124

Query: 287 ALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERK--YLLQQNASLD 344
             A  +  N+  V           K               +     +      ++N SL 
Sbjct: 125 GEARALY-NLGNV------YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLV 177

Query: 345 RLIEKSSMI--------FAWLKHCEYAKRKK------RIASELCDKGKLSDSFLVIGESY 390
             +   +                  +            IA E  DK     ++  +G +Y
Sbjct: 178 TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAY 237

Query: 391 QKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIA 450
             L +F  A ++Y K+  + + + +   +A +  ++GN      D+  A+D   +   IA
Sbjct: 238 IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297

Query: 451 VEANLPSVQLSALENM 466
            E N    +  A  ++
Sbjct: 298 QELNDRIGEGRACWSL 313

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score =  123 bits (312), Expect = 3e-30
 Identities = 55/299 (18%), Positives = 125/299 (41%), Gaps = 41/299 (13%)

Query: 12  KRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTC 71
                 A+  G++  EA+ +  +G+ LK  G + EA+   +   D+S +   +       
Sbjct: 71  HHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARAL 130

Query: 72  QSLGEVYLRL--------------------EHFKDALIYQVKKHLELAKDASDLVEQQRA 111
            +LG VY                       +  + A+ +  +++L L     D   Q RA
Sbjct: 131 YNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY-EENLSLVTALGDRAAQGRA 189

Query: 112 CTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNN 171
              LG T+Y +      +    R+A    +  + +A+   +  A  R+         ++N
Sbjct: 190 FGNLGNTHYLL-----GNF---RDAVIAHEQRLLIAKEFGDKAAERRA---------YSN 232

Query: 172 IGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREH 231
           +G   + L   E A ++  + L +  +    +D    ++  ++LGN Y  L+ ++K+ ++
Sbjct: 233 LGNAYIFLGEFETASEYYKKTLLLARQ---LKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 289

Query: 232 IEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALAS 290
             + + I +++    GE +   +LG  +  +  +D+A+   +K L +++ + D+    +
Sbjct: 290 HLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELT 348

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score =  122 bits (307), Expect = 1e-29
 Identities = 76/434 (17%), Positives = 150/434 (34%), Gaps = 64/434 (14%)

Query: 21  EGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLR 80
            G+ +       + G+ L   G+    + +F     V  + L    L      LG  Y  
Sbjct: 2   PGSMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKT--LSAIYSQLGNAYFY 59

Query: 81  LEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYF 140
           L  +  AL Y     L LA+   D + + +A   LG T   +      +      A    
Sbjct: 60  LHDYAKALEYH-HHDLTLARTIGDQLGEAKASGNLGNTLKVL-----GNF---DEAIVCC 110

Query: 141 KSAMKLAQTLKENPATSRS--------SFLKEYIDA---HNNIGMLQMELDNLEEAKKFL 189
           +  + +++ L +    +R+            +        +     +   D L+ A  F 
Sbjct: 111 QRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170

Query: 190 IRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEA 249
              L +        D   + R   NLGN +  L  +  +    EQ ++I K+      E 
Sbjct: 171 EENLSLVTA---LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAER 227

Query: 250 KGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALAS------QIDQNIETVKKAI 303
           + Y NLG  +  + +++ A   Y+K L LA+ ++D    A            ++  +KAI
Sbjct: 228 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 287

Query: 304 EVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYA 363
           +         ++L        IA    QE    + +  +        S+  A+     + 
Sbjct: 288 DYH------LKHLA-------IA----QELNDRIGEGRAC------WSLGNAYTALGNHD 324

Query: 364 K------RKKRIASELCDKGKLSDSFLVIGESYQKL-RKFNKAIKWYTKSWEMYKSIGNL 416
           +      +   I+ E+ DK     + L + +    L   ++      +++ E+  S+  +
Sbjct: 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNGV 384

Query: 417 E---GQALAKVNMG 427
               G+  +  NM 
Sbjct: 385 RPKLGRRHSMENME 398

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 81.6 bits (202), Expect = 3e-16
 Identities = 50/251 (19%), Positives = 88/251 (35%), Gaps = 25/251 (9%)

Query: 18  AKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEV 77
               G+R  + R    +G+     G + +A+        ++ ++  +        +LG  
Sbjct: 177 VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNA 236

Query: 78  YLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAK 137
           Y+ L  F+ A  Y  KK L LA+   D   + ++C  LG TY  +      D+     A 
Sbjct: 237 YIFLGEFETASEYY-KKTLLLARQLKDRAVEAQSCYSLGNTYTLL-----QDY---EKAI 287

Query: 138 KYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICN 197
            Y    + +AQ L +     R+           ++G     L N ++A  F  + LEI  
Sbjct: 288 DYHLKHLAIAQELNDRIGEGRA---------CWSLGNAYTALGNHDQAMHFAEKHLEISR 338

Query: 198 E--EEVSEDD--DGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYI 253
           E  ++  E       S L   LG  Y            I+  +   +      G      
Sbjct: 339 EVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNGVRPK---LGRRHSME 395

Query: 254 NLGELHYRVQK 264
           N+  +    +K
Sbjct: 396 NMELMKLTPEK 406

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 68.9 bits (169), Expect = 4e-12
 Identities = 26/125 (20%), Positives = 57/125 (45%)

Query: 369 IASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGN 428
           +A +L D+   + S   +G +Y  L+ + KAI ++ K   + + + +  G+  A  ++GN
Sbjct: 256 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGN 315

Query: 429 VLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEARRLQHEID 488
              + G+   A+   ++   I+ E    S +L+A  N+    M+   +      +  E  
Sbjct: 316 AYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENT 375

Query: 489 KLKES 493
           ++  S
Sbjct: 376 EIDSS 380

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 58.5 bits (142), Expect = 8e-09
 Identities = 40/245 (16%), Positives = 83/245 (33%), Gaps = 41/245 (16%)

Query: 246 QGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALAS-------------QI 292
           +         GE   +       +  ++ A+ +    ED   L++               
Sbjct: 6   EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT--EDLKTLSAIYSQLGNAYFYLHDY 63

Query: 293 DQNIETVKKAIEVMDELKKEEQ------NLKKLTRNMIIAKGTSQERKYLLQQNASLD-- 344
            + +E     + +   +  +        NL    + +    G   E     Q+   LD  
Sbjct: 64  AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL----GNFDEAIVCCQR--HLDIS 117

Query: 345 -RLIEKSSMIFAW--LKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIK 401
             L +K     A   L +  +AK K        D G+  +    + ++ Q       A+ 
Sbjct: 118 RELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEE---VRDALQA------AVD 168

Query: 402 WYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLS 461
           +Y ++  +  ++G+   Q  A  N+GN     G++  A+ A ++   IA E    + +  
Sbjct: 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERR 228

Query: 462 ALENM 466
           A  N+
Sbjct: 229 AYSNL 233

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 55.8 bits (135), Expect = 6e-08
 Identities = 24/110 (21%), Positives = 49/110 (44%), Gaps = 4/110 (3%)

Query: 361 EYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQA 420
           +Y  +   IA EL D+     +   +G +Y  L   ++A+ +  K  E+ + +G+  G+ 
Sbjct: 288 DYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGEL 347

Query: 421 LAKVNMGNVLDSNG-DWAGALDAFQEGYRIAVEANLPSVQL---SALENM 466
            A++N+ ++    G  ++       E   I    N    +L    ++ENM
Sbjct: 348 TARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNGVRPKLGRRHSMENM 397

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 46.9 bits (112), Expect = 3e-05
 Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 2/92 (2%)

Query: 375 DKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNG 434
                     + GE   K       + ++  + ++     +L+  +     +GN      
Sbjct: 4   SMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT--EDLKTLSAIYSQLGNAYFYLH 61

Query: 435 DWAGALDAFQEGYRIAVEANLPSVQLSALENM 466
           D+A AL+       +A        +  A  N+
Sbjct: 62  DYAKALEYHHHDLTLARTIGDQLGEAKASGNL 93

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score =  132 bits (334), Expect = 1e-33
 Identities = 56/295 (18%), Positives = 124/295 (42%), Gaps = 27/295 (9%)

Query: 10  EAKRAYRSAKE--EGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHL 67
                + +A +    + +  +   + +G+      +Y +AL++   D  ++     +   
Sbjct: 23  AGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82

Query: 68  LPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEM----- 122
                +LG     L +F +A++   ++HL+++++ +D V + RA   LG  Y+       
Sbjct: 83  AKASGNLGNTLKVLGNFDEAIVCC-QRHLDISRELNDKVGEARALYNLGNVYHAKGKSFG 141

Query: 123 -------FLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGML 175
                      +D   +++ A   ++  + L   L +  A  R+           N+G  
Sbjct: 142 CPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRA---------FGNLGNT 192

Query: 176 QMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQD 235
              L N  +A     + L I  E     D     R + NLGN Y+ L  ++ + E+ ++ 
Sbjct: 193 HYLLGNFRDAVIAHEQRLLIAKE---FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249

Query: 236 IIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALAS 290
           +++ ++++    EA+   +LG  +  +Q Y++AI  + K L +AQ ++D      
Sbjct: 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score =  123 bits (311), Expect = 1e-30
 Identities = 58/313 (18%), Positives = 113/313 (36%), Gaps = 28/313 (8%)

Query: 170 NNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSR 229
              G    +  +      F    +++  E     D    S ++  LGN Y  L  + K+ 
Sbjct: 9   ALEGERLCKSGDCRAGVSFFEAAVQVGTE-----DLKTLSAIYSQLGNAYFYLHDYAKAL 63

Query: 230 EHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALA 289
           E+   D+ + + I    GEAK   NLG     +  +DEAI+C Q+ L++++ + D+   A
Sbjct: 64  EYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 123

Query: 290 SQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYL--LQQNASLDRLI 347
             +  N+        V     K                  +  +  +   ++N SL   +
Sbjct: 124 RALY-NL-----GN-VYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL 176

Query: 348 EKSSMI--------FAWLKHCEYAKRKK------RIASELCDKGKLSDSFLVIGESYQKL 393
              +                  +            IA E  DK     ++  +G +Y  L
Sbjct: 177 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL 236

Query: 394 RKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEA 453
            +F  A ++Y K+  + + + +   +A +  ++GN      D+  A+D   +   IA E 
Sbjct: 237 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296

Query: 454 NLPSVQLSALENM 466
                +  A  ++
Sbjct: 297 KDRIGEGRACWSL 309

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score =  123 bits (311), Expect = 1e-30
 Identities = 55/293 (18%), Positives = 122/293 (41%), Gaps = 41/293 (13%)

Query: 12  KRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTC 71
                 A+  G++  EA+ +  +G+ LK  G + EA+   +   D+S +   +       
Sbjct: 67  HHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARAL 126

Query: 72  QSLGEVYLRL--------------------EHFKDALIYQVKKHLELAKDASDLVEQQRA 111
            +LG VY                          + A+    +++L L     D   Q RA
Sbjct: 127 YNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY-EENLSLVTALGDRAAQGRA 185

Query: 112 CTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNN 171
              LG T+Y +      +    R+A    +  + +A+   +  A  R+         ++N
Sbjct: 186 FGNLGNTHYLL-----GNF---RDAVIAHEQRLLIAKEFGDKAAERRA---------YSN 228

Query: 172 IGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREH 231
           +G   + L   E A ++  + L +  +    +D    ++  ++LGN Y  L+ ++K+ ++
Sbjct: 229 LGNAYIFLGEFETASEYYKKTLLLARQ---LKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 285

Query: 232 IEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMED 284
             + + I ++++   GE +   +LG  +  +  +D+A+   +K L +++ + D
Sbjct: 286 HLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGD 338

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score =  115 bits (290), Expect = 6e-28
 Identities = 68/388 (17%), Positives = 137/388 (35%), Gaps = 95/388 (24%)

Query: 70  TCQSL---GEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRS 126
           +C  L   GE   +    +  + +  +  +++  +  DL       +QLG  Y+ +    
Sbjct: 4   SCLELALEGERLCKSGDCRAGVSF-FEAAVQVGTE--DLKTLSAIYSQLGNAYFYL---- 56

Query: 127 DDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAK 186
             D+     A +Y    + LA+T+ +    +++           N+G     L N +EA 
Sbjct: 57  -HDY---AKALEYHHHDLTLARTIGDQLGEAKA---------SGNLGNTLKVLGNFDEAI 103

Query: 187 KFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMEL--------------------RMWD 226
               R L+I  E     D  G +R  +NLGNVY                           
Sbjct: 104 VCCQRHLDISRE---LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQ 160

Query: 227 KSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDED 286
            + +  E+++ +   +     + + + NLG  HY +  + +A++ +++ L +A+   D+ 
Sbjct: 161 AAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA 220

Query: 287 ALAS-------------QIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQER 333
           A                + +   E  KK + +  +LK               A       
Sbjct: 221 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV----------EA------- 263

Query: 334 KYLLQQNASLDRLIEKSSMIFAWLKHCEYAK------RKKRIASELCDKGKLSDSFLVIG 387
                   S        S+   +    +Y K      +   IA EL D+     +   +G
Sbjct: 264 -------QSC------YSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLG 310

Query: 388 ESYQKLRKFNKAIKWYTKSWEMYKSIGN 415
            +Y  L   ++A+ +  K  E+ + +G+
Sbjct: 311 NAYTALGNHDQAMHFAEKHLEISREVGD 338

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score =  111 bits (280), Expect = 1e-26
 Identities = 52/270 (19%), Positives = 96/270 (35%), Gaps = 25/270 (9%)

Query: 32  NVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQ 91
            + G+ L   G+    + +F     V  + L    L      LG  Y  L  +  AL Y 
Sbjct: 9   ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKT--LSAIYSQLGNAYFYLHDYAKALEYH 66

Query: 92  VKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLK 151
               L LA+   D + + +A   LG T   +      +      A    +  + +++ L 
Sbjct: 67  -HHDLTLARTIGDQLGEAKASGNLGNTLKVL-----GNF---DEAIVCCQRHLDISRELN 117

Query: 152 ENPATSRS--------SFLKEYIDA---HNNIGMLQMELDNLEEAKKFLIRGLEICNEEE 200
           +    +R+            +        +     +   + L+ A       L +     
Sbjct: 118 DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTA-- 175

Query: 201 VSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHY 260
              D   + R   NLGN +  L  +  +    EQ ++I K+      E + Y NLG  + 
Sbjct: 176 -LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI 234

Query: 261 RVQKYDEAILCYQKALNLAQSMEDEDALAS 290
            + +++ A   Y+K L LA+ ++D    A 
Sbjct: 235 FLGEFETASEYYKKTLLLARQLKDRAVEAQ 264

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score =  100 bits (251), Expect = 8e-23
 Identities = 52/357 (14%), Positives = 134/357 (37%), Gaps = 47/357 (13%)

Query: 113 TQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNI 172
              G    +       D    R    +F++A+++     +  +             ++ +
Sbjct: 9   ALEGERLCKS-----GDC---RAGVSFFEAAVQVGTEDLKTLSAI-----------YSQL 49

Query: 173 GMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHI 232
           G     L +  +A ++    L +        D  G ++   NLGN    L  +D++    
Sbjct: 50  GNAYFYLHDYAKALEYHHHDLTLART---IGDQLGEAKASGNLGNTLKVLGNFDEAIVCC 106

Query: 233 EQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQI 292
           ++ + I +++    GEA+   NLG +++   K                + E  + + + +
Sbjct: 107 QRHLDISRELNDKVGEARALYNLGNVYHAKGKSF-------GCPGPQDTGEFPEDVRNAL 159

Query: 293 DQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIA---KGTSQERKYLLQQNASLDRLI-E 348
              ++  ++ + ++  L  +     +   N+       G  ++     +Q   + +   +
Sbjct: 160 QAAVDLYEENLSLVTALG-DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 218

Query: 349 KSSMI-------FAWLKHCEYAK------RKKRIASELCDKGKLSDSFLVIGESYQKLRK 395
           K++          A++   E+        +   +A +L D+   + S   +G +Y  L+ 
Sbjct: 219 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD 278

Query: 396 FNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVE 452
           + KAI ++ K   + + + +  G+  A  ++GN   + G+   A+   ++   I+ E
Sbjct: 279 YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 60.0 bits (146), Expect = 2e-09
 Identities = 32/239 (13%), Positives = 73/239 (30%), Gaps = 31/239 (12%)

Query: 247 GEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALAS-------------QID 293
                    GE   +       +  ++ A+ +    ED   L++                
Sbjct: 3   ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT--EDLKTLSAIYSQLGNAYFYLHDYA 60

Query: 294 QNIETVKKAIEVMDELKKEEQNLKKLTRNM-IIAKGTSQERK--YLLQQNASLDRLIEKS 350
           + +E     + +   +  ++    K + N+    K      +     Q++  + R +   
Sbjct: 61  KALEYHHHDLTLARTI-GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN-- 117

Query: 351 SMIFAWLKHCEYAKRKKRIASELCDKGKLSDS---FLVIGESYQKLRKFNKAIKWYTKSW 407
                       A+    + +    KGK                       A+  Y ++ 
Sbjct: 118 -------DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170

Query: 408 EMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENM 466
            +  ++G+   Q  A  N+GN     G++  A+ A ++   IA E    + +  A  N+
Sbjct: 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNL 229

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score =  126 bits (318), Expect = 2e-31
 Identities = 46/264 (17%), Positives = 92/264 (34%), Gaps = 11/264 (4%)

Query: 917  TRLGVLNLSGNRLTDACGSYLSTILKNCK-VLYSLNIENCSITSRTIQKVADALGAE-ST 974
              +  L+LS N L       L     N    + SLN+   S+  +   ++   L A  + 
Sbjct: 22   HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 975  LAQLCIGYN--SPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQ-LAKTSC- 1030
            +  L +  N  S  + + +   L  +    + + L+L     S        Q  +     
Sbjct: 82   VTSLNLSGNFLSYKSSDELVKTLAAIPF--TITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139

Query: 1031 LTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGIL- 1089
            +T L L   +LG   S +L++ L +       L+L    L S    +    ++ +   + 
Sbjct: 140  ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVT 199

Query: 1090 ELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELN 1149
             L+L  N +  +    LA +  +    +  L L    L    +  L         L+ + 
Sbjct: 200  SLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVY 259

Query: 1150 LADNASKELTLQ--QNLSSVNSEN 1171
            L  +  K ++ +  + L +     
Sbjct: 260  LDYDIVKNMSKEQCKALGAAFPNI 283

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score =  123 bits (310), Expect = 2e-30
 Identities = 63/360 (17%), Positives = 118/360 (32%), Gaps = 29/360 (8%)

Query: 809  ECCKELSEA-PNMKLLKKLYISEVEDEVIVSECELQDISVTPLLNAL-HTHKTVALLDLS 866
                 + E       +  L +S            L  IS   L+ A  +T  +V  L+LS
Sbjct: 9    PGSNPVEEFTSIPHGVTSLDLSL---------NNLYSISTVELIQAFANTPASVTSLNLS 59

Query: 867  HNLLGNGTMEKLQQFFISSCQNYVDLT-LDLHCNRFGPTTLFQICEC-PVLFTRLGVLNL 924
             N LG    ++L Q   +   N   +T L+L  N     +  ++ +    +   + VL+L
Sbjct: 60   GNSLGFKNSDELVQILAAIPAN---VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDL 116

Query: 925  SGNRLTDACGSYLSTILKNC-KVLYSLNIENCSITSRTIQKVADALGAE-STLAQLCIGY 982
              N  +    S       N    + SLN+    +  ++  ++   L A  + +  L +  
Sbjct: 117  GWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176

Query: 983  NS--PVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQ-LAKTSC-LTHLMLGC 1038
            N+        +   L  +    S + L+L+   L       L    +     +  L L  
Sbjct: 177  NNLASKNCAELAKFLASIPA--SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCL 234

Query: 1039 TNLGSDGSLQLVESLFSRAQESVKLDLSYCGLES---TCIHKFTASVSLVHGILELNLGG 1095
              L       L        +    + L Y  +++          A+   +  I+ ++  G
Sbjct: 235  NCLHGPSLENLKLLK-DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293

Query: 1096 NPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQL-IKALSENDTLEELNLADNA 1154
              I    +  +++L+        V  L    L  A   Q  I+ L+  D L E       
Sbjct: 294  KEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKP 353

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score =  120 bits (304), Expect = 1e-29
 Identities = 55/331 (16%), Positives = 115/331 (34%), Gaps = 18/331 (5%)

Query: 853  ALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLT-LDLHCNRFGPTTLFQICE 911
                   V  LDLS N L + +  +L Q F ++  +   +T L+L  N  G     ++ +
Sbjct: 17   FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPAS---VTSLNLSGNSLGFKNSDELVQ 73

Query: 912  C-PVLFTRLGVLNLSGNRLTDACGSYLSTILKNCK-VLYSLNIENCSITSRTIQKVADAL 969
                +   +  LNLSGN L+      L   L      +  L++     +S++  +   A 
Sbjct: 74   ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133

Query: 970  GAE-STLAQLCIGYN--SPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLA 1026
                +++  L +  N     + + +  +L  +    + + LNL G  L+      L +  
Sbjct: 134  SNLPASITSLNLRGNDLGIKSSDELIQILAAIPA--NVNSLNLRGNNLASKNCAELAKFL 191

Query: 1027 KTSC--LTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSL 1084
             +    +T L L    LG     +L     S     V L+L    L    +         
Sbjct: 192  ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDS 251

Query: 1085 VHGILELNLGGNPIMKEGAN---ALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSE 1141
            +  +  + L  + +         AL +   N Q  + ++  +  ++  +  + +   + E
Sbjct: 252  LKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQ-KIILVDKNGKEIHPSHSIPISNLIRE 310

Query: 1142 -NDTLEELNLADNASKELTLQQNLSSVNSEN 1171
             +   +  +L +         Q      +  
Sbjct: 311  LSGKADVPSLLNQCLIFAQKHQTNIEDLNIP 341

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score =  107 bits (270), Expect = 4e-25
 Identities = 46/237 (19%), Positives = 88/237 (37%), Gaps = 9/237 (3%)

Query: 924  LSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGA-ESTLAQLCIGY 982
            ++         + +         + SL++   ++ S +  ++  A     +++  L +  
Sbjct: 1    MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG 60

Query: 983  N--SPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQ-LAKTSC-LTHLMLGC 1038
            N       + +  +L  +    + + LNL+G  LS    D L + LA     +T L LG 
Sbjct: 61   NSLGFKNSDELVQILAAIPA--NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGW 118

Query: 1039 TNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGIL-ELNLGGNP 1097
             +  S  S +  ++  +       L+L    L      +    ++ +   +  LNL GN 
Sbjct: 119  NDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178

Query: 1098 IMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSEND-TLEELNLADN 1153
            +  +    LA  L +    +  L LS   LGL    +L    S     +  LNL  N
Sbjct: 179  LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN 235

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 93.6 bits (233), Expect = 2e-20
 Identities = 55/332 (16%), Positives = 114/332 (34%), Gaps = 25/332 (7%)

Query: 809  ECCKELSEA--PNMKLLKKLYISEVEDEVIVSECELQDISVTPLLNAL-HTHKTVALLDL 865
                EL +A       +  L +S            L   +   L+  L      V  L+L
Sbjct: 37   ISTVELIQAFANTPASVTSLNLSG---------NSLGFKNSDELVQILAAIPANVTSLNL 87

Query: 866  SHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICEC-PVLFTRLGVLNL 924
            S N L   + ++L +   +    +    LDL  N F   +  +  +    L   +  LNL
Sbjct: 88   SGNFLSYKSSDELVKTLAAI--PFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNL 145

Query: 925  SGNRLTDACGSYLSTILKNCKV-LYSLNIENCSITSRTIQKVADALGAE-STLAQLCIGY 982
             GN L       L  IL      + SLN+   ++ S+   ++A  L +  +++  L +  
Sbjct: 146  RGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSA 205

Query: 983  N--SPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSC-LTHLMLGCT 1039
            N     +   +  +   +        LNL    L  P ++ L  L  +   L  + L   
Sbjct: 206  NLLGLKSYAELAYIFSSIPN--HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD 263

Query: 1040 NLGSDG--SLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILE-LNLGGN 1096
             + +      + + + F   Q+ + +D +   +  +     +  +  + G  +  +L   
Sbjct: 264  IVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQ 323

Query: 1097 PIMKEGANALASLLMNPQCCLKVLVLSKCQLG 1128
             ++    +      +N    L+  + +   L 
Sbjct: 324  CLIFAQKHQTNIEDLNIPDELRESIQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 65.1 bits (159), Expect = 5e-11
 Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 10/124 (8%)

Query: 1065 LSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSK 1124
            ++Y        +      S+ HG+  L+L  N +       L     N    +  L LS 
Sbjct: 1    MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG 60

Query: 1125 CQLGLAGVLQLIKAL-SENDTLEELNLADNASKELTLQQNLSSVNSENLQPALKTSDCVS 1183
              LG     +L++ L +    +  LNL+ N          LS  +S+ L   L       
Sbjct: 61   NSLGFKNSDELVQILAAIPANVTSLNLSGN---------FLSYKSSDELVKTLAAIPFTI 111

Query: 1184 KEVD 1187
              +D
Sbjct: 112  TVLD 115

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score =  118 bits (297), Expect = 4e-30
 Identities = 36/205 (17%), Positives = 78/205 (38%), Gaps = 20/205 (9%)

Query: 86  DALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMK 145
           +A  Y      +     +       A   LG  Y  M      D +    A+  F++  +
Sbjct: 4   EAHDYA-LAERQAQALLAHPATASGARFMLGYVYAFM------DRF--DEARASFQALQQ 54

Query: 146 LAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDD 205
            AQ   ++ A  R         A + +GM++    N + A++  +   E+     + ED 
Sbjct: 55  QAQKSGDHTAEHR---------ALHQVGMVERMAGNWDAARRCFLEERELL--ASLPEDP 103

Query: 206 DGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKY 265
              S   + +  V +       +R+  E+ ++  ++ +     A  +  LG+L  + +  
Sbjct: 104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163

Query: 266 DEAILCYQKALNLAQSMEDEDALAS 290
            EA   + +A ++   +ED +A+  
Sbjct: 164 LEAQQHWLRARDIFAELEDSEAVNE 188

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 98.5 bits (246), Expect = 2e-23
 Identities = 29/196 (14%), Positives = 74/196 (37%), Gaps = 20/196 (10%)

Query: 70  TCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDD 129
               LG VY  ++ F +A     +   + A+ + D   + RA  Q+G             
Sbjct: 28  ARFMLGYVYAFMDRFDEARASF-QALQQQAQKSGDHTAEHRALHQVGMVERMA------G 80

Query: 130 HYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFL 189
           ++    A++ F    +L  +L E+P  + ++           +  + +   +L  A++  
Sbjct: 81  NWD--AARRCFLEERELLASLPEDPLAASAN--------AYEVATVALHFGDLAGARQEY 130

Query: 190 IRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEA 249
            + L    +   ++D    +     LG++  + +   ++++H  +   I  ++E  +   
Sbjct: 131 EKSLVYAQQ---ADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVN 187

Query: 250 KGYINLGELHYRVQKY 265
           +    L  L +    +
Sbjct: 188 ELMTRLNGLEHHHHHH 203

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 79.6 bits (197), Expect = 6e-17
 Identities = 23/223 (10%), Positives = 68/223 (30%), Gaps = 36/223 (16%)

Query: 227 KSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDED 286
           ++ ++   +      + H    +     LG ++  + ++DEA   +Q     AQ   D  
Sbjct: 4   EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT 63

Query: 287 ALAS-------------QIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQER 333
           A                  D       +  E++  L ++          +          
Sbjct: 64  AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATV------- 116

Query: 334 KYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKL 393
             L   +  L    +               ++    A +  D+  ++ +F  +G+  Q+ 
Sbjct: 117 -ALHFGD--LAGARQ-------------EYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160

Query: 394 RKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDW 436
           +   +A + + ++ +++  + + E        +  +   +   
Sbjct: 161 KNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHHH 203

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 77.7 bits (192), Expect = 3e-16
 Identities = 19/113 (16%), Positives = 40/113 (35%), Gaps = 3/113 (2%)

Query: 184 EAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIE 243
           EA  + +   +    + +       S     LG VY  +  +D++R   +      +K  
Sbjct: 4   EAHDYALAERQA---QALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG 60

Query: 244 HCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNI 296
               E +    +G +      +D A  C+ +   L  S+ ++   AS     +
Sbjct: 61  DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEV 113

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 71.5 bits (176), Expect = 4e-14
 Identities = 21/133 (15%), Positives = 49/133 (36%), Gaps = 2/133 (1%)

Query: 355 AWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIG 414
           A  +  +YA  +++  + L      S +  ++G  Y  + +F++A   +    +  +  G
Sbjct: 1   AAFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG 60

Query: 415 NLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVE-ANLPSVQLSALENMHYSHMIR 473
           +   +  A   +G V    G+W  A   F E   +       P    +    +    +  
Sbjct: 61  DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHF 120

Query: 474 FDNIEEARRLQHE 486
             ++  AR+   +
Sbjct: 121 -GDLAGARQEYEK 132

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 68.1 bits (167), Expect = 7e-13
 Identities = 27/182 (14%), Positives = 61/182 (33%), Gaps = 19/182 (10%)

Query: 1   MGRDEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVK 60
           M R +   +  +   + A++ G+   E R  + +G + +  G +  A + F  + ++   
Sbjct: 39  MDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLAS 98

Query: 61  YLPEKHLL-PTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTY 119
              +          +  V L       A     +K L  A+ A D V    A   LG   
Sbjct: 99  LPEDPLAASANAYEVATVALHFGDLAGARQEY-EKSLVYAQQADDQVAIACAFRGLGDLA 157

Query: 120 YEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMEL 179
            +       +      A++++  A  +   L+++ A +              +  L+   
Sbjct: 158 QQE-----KNL---LEAQQHWLRARDIFAELEDSEAVNE---------LMTRLNGLEHHH 200

Query: 180 DN 181
            +
Sbjct: 201 HH 202

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 65.8 bits (161), Expect = 4e-12
 Identities = 12/92 (13%), Positives = 24/92 (26%)

Query: 375 DKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNG 434
           D    S +   +            A + Y KS    +   +    A A   +G++     
Sbjct: 102 DPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161

Query: 435 DWAGALDAFQEGYRIAVEANLPSVQLSALENM 466
           +   A   +     I  E          +  +
Sbjct: 162 NLLEAQQHWLRARDIFAELEDSEAVNELMTRL 193

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 18/124 (14%), Positives = 43/124 (34%), Gaps = 2/124 (1%)

Query: 361 EYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGN-LEGQ 419
              +  ++ A +  D      +   +G   +    ++ A + + +  E+  S+       
Sbjct: 47  ASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106

Query: 420 ALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEE 479
           +     +  V    GD AGA   +++    A +A+       A   +         N+ E
Sbjct: 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE-KNLLE 165

Query: 480 ARRL 483
           A++ 
Sbjct: 166 AQQH 169

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score =  122 bits (308), Expect = 6e-30
 Identities = 44/348 (12%), Positives = 106/348 (30%), Gaps = 78/348 (22%)

Query: 74  LGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSI 133
            G   L    +  A+ +  KK         D +E+     ++  +YY M           
Sbjct: 109 RGMYELDQREYLSAIKFF-KKAESKLIFVKDRIEKAEFFFKMSESYYYM--------KQT 159

Query: 134 RNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGL 193
             +  Y + A ++ +  +              +  H+      ++L   E+A     +  
Sbjct: 160 YFSMDYARQAYEIYKEHEAYN--------IRLLQCHSLFATNFLDLKQYEDAISHFQKAY 211

Query: 194 EICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYI 253
            +       +      R  +N+G        ++ +  + ++ I + ++        + Y 
Sbjct: 212 SMAEA---EKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268

Query: 254 NLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEE 313
            + ++HY++ K D+A   + K +  +Q   D   L+              E +  L    
Sbjct: 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE------------FEFLKSLYLSG 316

Query: 314 QNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASEL 373
            + + +                                         ++ + K   A   
Sbjct: 317 PDEEAI-------------------------------------QGFFDFLESKMLYAD-- 337

Query: 374 CDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQAL 421
                L D  + + + Y + + F KA  ++ K  ++ + I    G +L
Sbjct: 338 -----LEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLI--QGGVSL 378

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score =  107 bits (269), Expect = 7e-25
 Identities = 40/278 (14%), Positives = 98/278 (35%), Gaps = 27/278 (9%)

Query: 12  KRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTC 71
           K+A        +R E+A +   + +      +   ++ + R  Y++  ++      L  C
Sbjct: 127 KKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQC 186

Query: 72  Q-SLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDH 130
                  +L L+ ++DA+ +  +K   +A+         R    +G              
Sbjct: 187 HSLFATNFLDLKQYEDAISHF-QKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ------SQ 239

Query: 131 YSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLI 190
           Y   +A  YFK A+ + +     P             A+  I  +  +L  +++A ++  
Sbjct: 240 YE--DAIPYFKRAIAVFEESNILP---------SLPQAYFLITQIHYKLGKIDKAHEYHS 288

Query: 191 RGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAK 250
           +G+    +   + D    S     L ++Y+         E I+      +          
Sbjct: 289 KGMAYSQK---AGDVIYLSEFE-FLKSLYLS----GPDEEAIQGFFDFLESKMLYADLED 340

Query: 251 GYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDAL 288
             I++ + ++  + + +A   + K   + Q ++   +L
Sbjct: 341 FAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSL 378

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 89.5 bits (222), Expect = 6e-19
 Identities = 32/355 (9%), Positives = 101/355 (28%), Gaps = 58/355 (16%)

Query: 130 HYSIRNAKKYFKSAMKLAQTLKENP--ATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKK 187
            +SI +A+   +   +    ++E+       S     +      +  L+      +    
Sbjct: 25  RFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLS 84

Query: 188 FLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQG 247
            L+  ++                 +   G   ++ R +  + +  ++       ++    
Sbjct: 85  DLLLEIDKKQARL---TGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIE 141

Query: 248 EAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMD 307
           +A+ +  + E +Y +++   ++   +                           +A E+  
Sbjct: 142 KAEFFFKMSESYYYMKQTYFSMDYAR---------------------------QAYEIYK 174

Query: 308 ELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKK 367
           E +     L +                +L  +        E +           + ++  
Sbjct: 175 EHEAYNIRLLQCHSLFATN--------FLDLKQ------YEDAI---------SHFQKAY 211

Query: 368 RIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMG 427
            +A        +  +   IG       ++  AI ++ ++  +++    L     A   + 
Sbjct: 212 SMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271

Query: 428 NVLDSNGDWAGALDAFQEGYRIAVEANLPSVQ--LSALENMHYSHMIRFDNIEEA 480
            +    G    A +   +G   + +A           L+++ Y      + I+  
Sbjct: 272 QIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSL-YLSGPDEEAIQGF 325

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 62.5 bits (152), Expect = 4e-10
 Identities = 21/124 (16%), Positives = 49/124 (39%), Gaps = 2/124 (1%)

Query: 361 EYAKRKKRIASELCD-KGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQ 419
           +YA++   I  E      +L     +   ++  L+++  AI  + K++ M ++    +  
Sbjct: 164 DYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLM 223

Query: 420 ALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEE 479
                N+G   +S   +  A+  F+    +  E+N+      A   +   H  +   I++
Sbjct: 224 GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHY-KLGKIDK 282

Query: 480 ARRL 483
           A   
Sbjct: 283 AHEY 286

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 51.7 bits (124), Expect = 1e-06
 Identities = 27/243 (11%), Positives = 69/243 (28%), Gaps = 45/243 (18%)

Query: 261 RVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLT 320
           R     +A    ++       ME++  L              +E ++ L+K         
Sbjct: 24  RRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRI------ 77

Query: 321 RNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLS 380
                     +E+  L      +D+   + + +  +  +                     
Sbjct: 78  ----------EEQPRLSDLLLEIDKKQARLTGLLEYYFN--------------------- 106

Query: 381 DSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGAL 440
                 G      R++  AIK++ K+      + +   +A     M            ++
Sbjct: 107 ---FFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSM 163

Query: 441 DAFQEGYRIAVEANLPSVQLSALEN---MHYSHMIRFDNIEEARRLQHEIDKLKESKSED 497
           D  ++ Y I  E    +++L    +    ++  + ++++       Q      +  K   
Sbjct: 164 DYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAIS--HFQKAYSMAEAEKQPQ 221

Query: 498 LEA 500
           L  
Sbjct: 222 LMG 224

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score =  116 bits (293), Expect = 5e-28
 Identities = 53/323 (16%), Positives = 92/323 (28%), Gaps = 28/323 (8%)

Query: 838  SECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTL-DL 896
                +       +   L    +V  + LS N +G      L +  I+S ++       D+
Sbjct: 12   KLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSEN-IASKKDLEIAEFSDI 70

Query: 897  HCNRFG---PTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIE 953
               R     P  L  + +  +   +L  + LS N         L   L     L  L + 
Sbjct: 71   FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLH 130

Query: 954  NCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLK 1013
            N  +  +   K+A AL   +                       K         +     +
Sbjct: 131  NNGLGPQAGAKIARALQELAVNK--------------------KAKNAPPLRSIICGRNR 170

Query: 1014 LSKPVVDRLCQ-LAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLES 1072
            L    +    +       L  + +    +  +G   L+    +  QE   LDL       
Sbjct: 171  LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH 230

Query: 1073 TCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLL-MNPQCCLKVLVLSKCQLGLAG 1131
                    ++     + EL L    +   GA A+           L+ L L   ++ L  
Sbjct: 231  LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 290

Query: 1132 VLQLIKALSEN-DTLEELNLADN 1153
            V  L   + E    L  L L  N
Sbjct: 291  VRTLKTVIDEKMPDLLFLELNGN 313

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score =  111 bits (279), Expect = 3e-26
 Identities = 56/362 (15%), Positives = 111/362 (30%), Gaps = 54/362 (14%)

Query: 809  ECCKELSEA-PNMKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKTVALLDLSH 867
            E  K +         +K++ +S            +   +   L   + + K + + + S 
Sbjct: 19   EDEKSVFAVLLEDDSVKEIVLSG---------NTIGTEAARWLSENIASKKDLEIAEFSD 69

Query: 868  NLLGNGTMEKLQ--QFFISSCQNYVDLT-LDLHCNRFGPTTLFQICECPVLFTRLGVLNL 924
               G    E  +  +  + +      L  + L  N FGPT    + +     T L  L L
Sbjct: 70   IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 129

Query: 925  SGNRLTDACGSYLSTILKNC---------KVLYSLNIENCSITSRTIQKVADALGAESTL 975
              N L    G+ ++  L+             L S+      + + ++++ A    +   L
Sbjct: 130  HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189

Query: 976  AQLCIGYNSPVTGNAITNLLVK-LDTLKSFSELNLNGLKLSKPVVDRLCQ-LAKTSCLTH 1033
              + +  N  +    I +LL++ L   +    L+L     +      L   L     L  
Sbjct: 190  HTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 248

Query: 1034 LMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNL 1093
            L L    L + G+  +V++                                   +  L L
Sbjct: 249  LGLNDCLLSARGAAAVVDAFSKLENIG---------------------------LQTLRL 281

Query: 1094 GGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAG--VLQLIKALSENDTLEELNLA 1151
              N I  +    L +++      L  L L+  +       V ++ +  S     E   L 
Sbjct: 282  QYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELD 341

Query: 1152 DN 1153
            D 
Sbjct: 342  DM 343

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score =  106 bits (266), Expect = 2e-24
 Identities = 43/249 (17%), Positives = 80/249 (32%), Gaps = 14/249 (5%)

Query: 919  LGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQL 978
            +   +L  + +T      +  +L     +  + +   +I +   + +++ + ++  L   
Sbjct: 6    IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 979  -----CIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQ-LAKTSCLT 1032
                   G        A+  LL  L        + L+         + L   L+K + L 
Sbjct: 66   EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 1033 HLMLGCTNLGSDGSLQLVESLFSRAQESV--------KLDLSYCGLESTCIHKFTASVSL 1084
            HL L    LG     ++  +L   A             +      LE+  + ++  +   
Sbjct: 126  HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185

Query: 1085 VHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDT 1144
               +  + +  N I  EG   L    +     LKVL L        G   L  AL     
Sbjct: 186  HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245

Query: 1145 LEELNLADN 1153
            L EL L D 
Sbjct: 246  LRELGLNDC 254

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 72.4 bits (178), Expect = 2e-13
 Identities = 54/288 (18%), Positives = 91/288 (31%), Gaps = 51/288 (17%)

Query: 788  KDIIEVSIDGWVQKRLMKLYIECCKELSEA-PNMKLLKKLYISEVEDEVIVSECELQDIS 846
            KD+           R+     E  + L +A      L  + +S+               +
Sbjct: 60   KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD---------NAFGPTA 110

Query: 847  VTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDL------TLDLHCNR 900
              PL++ L  H  +  L L +N LG     K+ +       N          ++    NR
Sbjct: 111  QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170

Query: 901  FGPTTLFQICE----CPVLF-------------------------TRLGVLNLSGNRLTD 931
                ++ +  +      +L                            L VL+L  N  T 
Sbjct: 171  LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH 230

Query: 932  ACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADAL--GAESTLAQLCIGYN--SPVT 987
               S L+  LK+   L  L + +C +++R    V DA        L  L + YN      
Sbjct: 231  LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 290

Query: 988  GNAITNLL-VKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHL 1034
               +  ++  K+  L    ELN N       VVD + ++  T     L
Sbjct: 291  VRTLKTVIDEKMPDLLFL-ELNGNRFSEEDDVVDEIREVFSTRGRGEL 337

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 21/162 (12%), Positives = 45/162 (27%), Gaps = 31/162 (19%)

Query: 1117 LKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKELTLQQNLSSVNSENLQPAL 1176
            ++   L    +       +   L E+D+++E+ L+ N          + +  +  L   +
Sbjct: 6    IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGN---------TIGTEAARWLSENI 56

Query: 1177 KTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFDNSCT------SSC 1230
             +   +              +     ++    E     +                  S  
Sbjct: 57   ASKKDLEI--------AEFSDIFTGRVKDEIPEA----LRLLLQALLKCPKLHTVRLSDN 104

Query: 1231 QKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFSTQAVKTL 1272
                 F     + L   +    PL+ L L NNG   QA   +
Sbjct: 105  A----FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 142

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score =  112 bits (281), Expect = 2e-26
 Identities = 38/350 (10%), Positives = 109/350 (31%), Gaps = 36/350 (10%)

Query: 72  QSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHY 131
             +   +  +  + +           + +    +   Q+  T L + Y   F      + 
Sbjct: 56  SLMCFRHQLMLDYLEPGKTY-GNRPTVTELLETIETPQKKLTGLLKYYSLFFR---GMYE 111

Query: 132 SIRN----AKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKK 187
             +     A  Y++ A K    + ++          E  + H  +      +     +  
Sbjct: 112 FDQKEYVEAIGYYREAEKELPFVSDDI---------EKAEFHFKVAEAYYHMKQTHVSMY 162

Query: 188 FLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQG 247
            +++ L+I     +      +S     +   Y + + +DK+  H+E  + +   I++ + 
Sbjct: 163 HILQALDIYQNHPLYSIRTIQS--LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF 220

Query: 248 EAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMD 307
            A   +N+   + R      A+  +QKA  +++    +          +         + 
Sbjct: 221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF--GL------SWTLC 272

Query: 308 ELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKK 367
           +  + ++  + +   +      S   K+  +    L  + +++           Y ++K 
Sbjct: 273 KAGQTQKAFQFIEEGLDHITARSH--KFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN 330

Query: 368 RIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLE 417
                      +          ++    F +A  +Y K  +  + I   E
Sbjct: 331 -------LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGE 373

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score =  102 bits (257), Expect = 2e-23
 Identities = 38/284 (13%), Positives = 85/284 (29%), Gaps = 32/284 (11%)

Query: 10  EAKRAYRSA----KEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEK 65
           EA   YR A        +  E+A +   + +   +  +   ++       D+   +    
Sbjct: 119 EAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS 178

Query: 66  HLLPTCQ-SLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFL 124
                    +   Y   +H+  AL +  +  LELA D  +      +   +  +Y     
Sbjct: 179 IRTIQSLFVIAGNYDDFKHYDKALPHL-EAALELAMDIQNDRFIAISLLNIANSYDRS-- 235

Query: 125 RSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEE 184
               D    + A ++F+ A K+++    +                  +     +    ++
Sbjct: 236 ---GDD---QMAVEHFQKAAKVSREKVPD----------LLPKVLFGLSWTLCKAGQTQK 279

Query: 185 AKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEH 244
           A +F+  GL+             +      L  VY E          I   +   +K   
Sbjct: 280 AFQFIEEGLDHITA---RSHKFYKELF-LFLQAVYKET----VDERKIHDLLSYFEKKNL 331

Query: 245 CQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDAL 288
                    +   +      +++A   Y+K L   + +   + L
Sbjct: 332 HAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECL 375

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 96.0 bits (239), Expect = 4e-21
 Identities = 51/390 (13%), Positives = 119/390 (30%), Gaps = 64/390 (16%)

Query: 78  YLRLEHFKDALIY--QVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRN 135
            +R     DA I   +V++ ++  ++  DL+        L    +++ L           
Sbjct: 22  MIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYY----SLMCFRHQLMLDYL-------E 70

Query: 136 AKKYFKSAMKLAQTLK--ENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGL 193
             K + +   + + L+  E P    +  LK Y  +    GM + +     EA  +     
Sbjct: 71  PGKTYGNRPTVTELLETIETPQKKLTGLLKYY--SLFFRGMYEFDQKEYVEAIGYYREAE 128

Query: 194 EICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQ-GEAKGY 252
           +         DD  ++  H  +   Y  ++    S  HI Q + I +          +  
Sbjct: 129 KELPFVS---DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185

Query: 253 INLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALAS-------------QIDQNIETV 299
             +   +   + YD+A+   + AL LA  ++++  +A                   +E  
Sbjct: 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245

Query: 300 KKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKH 359
           +KA +V  E   +   L K+   +                        +K+         
Sbjct: 246 QKAAKVSREKVPD--LLPKVLFGLSWT--------LCKAGQ------TQKAF-------- 281

Query: 360 CEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQ 419
            ++ +      +    K      +  +    Q + K     +        ++        
Sbjct: 282 -QFIEEGLDHITARSHK-----FYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYI 335

Query: 420 ALAKVNMGNVLDSNGDWAGALDAFQEGYRI 449
                +   V +S+  +  A   +++  + 
Sbjct: 336 EACARSAAAVFESSCHFEQAAAFYRKVLKA 365

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 65.2 bits (159), Expect = 5e-11
 Identities = 37/286 (12%), Positives = 94/286 (32%), Gaps = 35/286 (12%)

Query: 214 NLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQ 273
           N     +       +     +     +++E  Q     Y  +   H  +  Y E    Y 
Sbjct: 17  NEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYG 76

Query: 274 KALNLAQSMEDEDALASQIDQNIETV---------------KKAIEVMDELKKEEQNLKK 318
               + + +E  +    ++   ++                  +AI      ++ E+ L  
Sbjct: 77  NRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIG---YYREAEKELPF 133

Query: 319 LTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASEL-CDKG 377
           ++ ++  A+                 ++ E    +        +  +   I         
Sbjct: 134 VSDDIEKAE--------------FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI 179

Query: 378 KLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWA 437
           +   S  VI  +Y   + ++KA+     + E+   I N    A++ +N+ N  D +GD  
Sbjct: 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQ 239

Query: 438 GALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEARRL 483
            A++ FQ+  +++ E     +    L  + ++   +    ++A + 
Sbjct: 240 MAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTL-CKAGQTQKAFQF 283

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 61.4 bits (149), Expect = 8e-10
 Identities = 25/221 (11%), Positives = 68/221 (30%), Gaps = 15/221 (6%)

Query: 253 INLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKE 312
           IN      R     +A +   +     Q ME+        DQ++      +    +L  +
Sbjct: 16  INEWYKMIRQFSVPDAEILKAEVEQDIQQMEE--------DQDLLIYYSLMCFRHQLMLD 67

Query: 313 EQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKK----- 367
                K   N        +  +   ++   L +               EY +        
Sbjct: 68  YLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREA 127

Query: 368 -RIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLE-GQALAKVN 425
            +    + D  + ++    + E+Y  +++ + ++    ++ ++Y++          +   
Sbjct: 128 EKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187

Query: 426 MGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENM 466
           +    D    +  AL   +    +A++         +L N+
Sbjct: 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNI 228

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score =  105 bits (265), Expect = 2e-24
 Identities = 58/397 (14%), Positives = 114/397 (28%), Gaps = 70/397 (17%)

Query: 773  GRSLESFDAFKDQLGKDIIEVSIDGWVQKRLMKLYIECCKELSEAPNMKLLKKLYISEVE 832
            G       A   QLG  I  +      Q    KL     + L  +  +  L   Y     
Sbjct: 5    GLLSAHNRAVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHY----- 59

Query: 833  DEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDL 892
                    E Q+        +     ++  L+L+   +       +    + S ++ +D 
Sbjct: 60   --------EFQNQRF-----SAEVLSSLRQLNLAGVRMTPVKCTVV-AAVLGSGRHALD- 104

Query: 893  TLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILK-NCKVLYSLN 951
             ++L   +  P  L  +      F R   L L  N L       L  +L  +   + +L 
Sbjct: 105  EVNLASCQLDPAGLRTLLPV---FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLR 161

Query: 952  IENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNG 1011
            + N  +T+  +  + + L   +++  L + +        + +                 G
Sbjct: 162  LSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG------LGD----------------EG 199

Query: 1012 LKLSKPVVDRLCQ-LAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVK-LDLSYCG 1069
            L+L       L   L +   L  L +     G   +L L  +   R   S++ L L +  
Sbjct: 200  LEL-------LAAQLDRNRQLQELNVAYNGAGDTAALALARAA--REHPSLELLHLYFNE 250

Query: 1070 LESTCIHKFTASVSLVHGILEL---NLGGNPIMKEGANALASLLMNPQ----------CC 1116
            L S              G   +      G  + +  +  L+ +  N              
Sbjct: 251  LSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLE 310

Query: 1117 LKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADN 1153
            L +  L   +       +  + L     +  L     
Sbjct: 311  LLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLG 347

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 95.2 bits (237), Expect = 9e-21
 Identities = 49/345 (14%), Positives = 89/345 (25%), Gaps = 66/345 (19%)

Query: 809  ECCKELSEA--PNMKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKTVALLDLS 866
              C  ++         L ++ ++          C+L    +  LL      +    L L 
Sbjct: 87   VKCTVVAAVLGSGRHALDEVNLAS---------CQLDPAGLRTLLPVFLRARK---LGLQ 134

Query: 867  HNLLGNGTMEKLQQFFISSCQNYVDLT-LDLHCNRFGPTTLFQICECPVLFTRLGVLNLS 925
             N LG    + L+   +    +   +T L L  N      +  + E     T +  L+L 
Sbjct: 135  LNSLGPEACKDLRDLLLH---DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLL 191

Query: 926  GNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYN-- 983
               L D     L+  L   + L  LN+            +A A     +L  L + +N  
Sbjct: 192  HTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251

Query: 984  SPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGS 1043
            S      + +L    +                               +   +   T +  
Sbjct: 252  SSEGRQVLRDLGGAAEGGAR---------------------------VVVSLTEGTAVSE 284

Query: 1044 DGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGA 1103
              S+ L E    R   S         LE                +L  +L  +       
Sbjct: 285  YWSVILSEVQ--RNLNSWDRARVQRHLE----------------LLLRDLEDSRGATLNP 326

Query: 1104 NALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEEL 1148
               A LL   +  ++ L+      G            +       
Sbjct: 327  WRKAQLLRV-EGEVRALLEQLGSSGSPSGSWSHPQFEKGAGHHHH 370

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 99.5 bits (249), Expect = 3e-24
 Identities = 34/181 (18%), Positives = 82/181 (45%), Gaps = 20/181 (11%)

Query: 104 DLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLK 163
               Q RA   LG T+Y +      +    R+A    +  + +A+   +  A   +    
Sbjct: 4   SRAAQGRAFGNLGNTHYLL-----GNF---RDAVIAHEQRLLIAKEFGDKAAERIA---- 51

Query: 164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELR 223
                ++N+G   + L   E A ++  + L +  +    +D    ++  ++LGN Y  L+
Sbjct: 52  -----YSNLGNAYIFLGEFETASEYYKKTLLLARQ---LKDRAVEAQSCYSLGNTYTLLQ 103

Query: 224 MWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSME 283
            ++K+ ++  + + I ++++   GE +   +LG  +  +  +D+A+   +K L +++ + 
Sbjct: 104 DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 163

Query: 284 D 284
           D
Sbjct: 164 D 164

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 90.3 bits (225), Expect = 6e-21
 Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 3/124 (2%)

Query: 167 DAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWD 226
            A  N+G     L N  +A     + L I  E     D       + NLGN Y+ L  ++
Sbjct: 10  RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE---FGDKAAERIAYSNLGNAYIFLGEFE 66

Query: 227 KSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDED 286
            + E+ ++ +++ ++++    EA+   +LG  +  +Q Y++AI  + K L +AQ ++D  
Sbjct: 67  TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRI 126

Query: 287 ALAS 290
               
Sbjct: 127 GEGR 130

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 73.7 bits (182), Expect = 3e-15
 Identities = 41/178 (23%), Positives = 71/178 (39%), Gaps = 18/178 (10%)

Query: 21  EGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLR 80
            G+R  + R    +G+     G + +A+        ++ ++  +        +LG  Y+ 
Sbjct: 2   PGSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIF 61

Query: 81  LEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYF 140
           L  F+ A  Y  KK L LA+   D   + ++C  LG TY  +      D+     A  Y 
Sbjct: 62  LGEFETASEYY-KKTLLLARQLKDRAVEAQSCYSLGNTYTLL-----QDY---EKAIDYH 112

Query: 141 KSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNE 198
              + +AQ LK+     R+           ++G     L N ++A  F  + LEI  E
Sbjct: 113 LKHLAIAQELKDRIGEGRA---------CWSLGNAYTALGNHDQAMHFAEKHLEISRE 161

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 71.0 bits (175), Expect = 3e-14
 Identities = 23/87 (26%), Positives = 39/87 (44%)

Query: 204 DDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQ 263
               + R   NLGN +  L  +  +    EQ ++I K+      E   Y NLG  +  + 
Sbjct: 4   SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLG 63

Query: 264 KYDEAILCYQKALNLAQSMEDEDALAS 290
           +++ A   Y+K L LA+ ++D    A 
Sbjct: 64  EFETASEYYKKTLLLARQLKDRAVEAQ 90

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 61.0 bits (149), Expect = 8e-11
 Identities = 33/183 (18%), Positives = 72/183 (39%), Gaps = 37/183 (20%)

Query: 246 QGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALAS-------------QI 292
             + + + NLG  HY +  + +A++ +++ L +A+   D+ A                + 
Sbjct: 6   AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEF 65

Query: 293 DQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSM 352
           +   E  KK + +  +LK      +    ++    G +    Y L Q+       EK+  
Sbjct: 66  ETASEYYKKTLLLARQLKDRAVEAQSCY-SL----GNT----YTLLQD------YEKA-- 108

Query: 353 IFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKS 412
               + +         IA EL D+     +   +G +Y  L   ++A+ +  K  E+ + 
Sbjct: 109 ----IDYHLKHLA---IAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161

Query: 413 IGN 415
           +G+
Sbjct: 162 VGD 164

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 60.6 bits (148), Expect = 1e-10
 Identities = 22/106 (20%), Positives = 47/106 (44%)

Query: 361 EYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQA 420
              +++  IA E  DK     ++  +G +Y  L +F  A ++Y K+  + + + +   +A
Sbjct: 30  IAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89

Query: 421 LAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENM 466
            +  ++GN      D+  A+D   +   IA E      +  A  ++
Sbjct: 90  QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSL 135

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 60.6 bits (148), Expect = 1e-10
 Identities = 22/92 (23%), Positives = 46/92 (50%)

Query: 361 EYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQA 420
           EY K+   +A +L D+   + S   +G +Y  L+ + KAI ++ K   + + + +  G+ 
Sbjct: 70  EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG 129

Query: 421 LAKVNMGNVLDSNGDWAGALDAFQEGYRIAVE 452
            A  ++GN   + G+   A+   ++   I+ E
Sbjct: 130 RACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 58.7 bits (143), Expect = 4e-10
 Identities = 15/92 (16%), Positives = 41/92 (44%)

Query: 375 DKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNG 434
            +     +F  +G ++  L  F  A+  + +   + K  G+   + +A  N+GN     G
Sbjct: 4   SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLG 63

Query: 435 DWAGALDAFQEGYRIAVEANLPSVQLSALENM 466
           ++  A + +++   +A +    +V+  +  ++
Sbjct: 64  EFETASEYYKKTLLLARQLKDRAVEAQSCYSL 95

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 56.8 bits (138), Expect = 2e-09
 Identities = 30/133 (22%), Positives = 63/133 (47%), Gaps = 9/133 (6%)

Query: 18  AKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEV 77
           AKE G++  E    + +G+     GE+  A ++++    ++ +         +C SLG  
Sbjct: 39  AKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT 98

Query: 78  YLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAK 137
           Y  L+ ++ A+ Y   KHL +A++  D + + RAC  LG  Y  +      +H     A 
Sbjct: 99  YTLLQDYEKAIDYH-LKHLAIAQELKDRIGEGRACWSLGNAYTAL-----GNH---DQAM 149

Query: 138 KYFKSAMKLAQTL 150
            + +  +++++ +
Sbjct: 150 HFAEKHLEISREV 162

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 40.6 bits (96), Expect = 9e-04
 Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 12  KRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTC 71
           K+    A++  +R  EA+    +G+      +Y +A+ +      ++ +          C
Sbjct: 73  KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRAC 132

Query: 72  QSLGEVYLRLEHFKDALIYQVKKHLELAKDASD 104
            SLG  Y  L +   A+ +  +KHLE++++  D
Sbjct: 133 WSLGNAYTALGNHDQAMHFA-EKHLEISREVGD 164

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 88.9 bits (221), Expect = 5e-19
 Identities = 42/298 (14%), Positives = 92/298 (30%), Gaps = 61/298 (20%)

Query: 7   QMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKH 66
                 +      E+           V    L    +  E            V   P   
Sbjct: 37  DFKMCYKLTSVVMEKDPFHASCL--PVHIGTLVELNKANELFY----LSHKLVDLYPSNP 90

Query: 67  LLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTY------- 119
           +  +  ++G  YL + H  +     + K   L K          A    G ++       
Sbjct: 91  V--SWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGP------AWIAYGHSFAVESEHD 142

Query: 120 -----YEMFLRSDDDHY--------------SIRNAKKYFKSAMKLAQTLKENPATSRSS 160
                Y    +     +              + + A+++F  A+ +       P      
Sbjct: 143 QAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI------AP------ 190

Query: 161 FLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYM 220
              E     + +G++  +    + A+K+ +  LE           D    L +NLG+V  
Sbjct: 191 ---EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR 247

Query: 221 ELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNL 278
           +L+ + ++ ++  Q +++  +       A  Y  +G +H  +  ++ A+  +  AL L
Sbjct: 248 KLKKYAEALDYHRQALVLIPQ------NASTYSAIGYIHSLMGNFENAVDYFHTALGL 299

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 79.3 bits (196), Expect = 8e-16
 Identities = 27/254 (10%), Positives = 67/254 (26%), Gaps = 54/254 (21%)

Query: 34  IGDILKNRGEYVEALKWFR--IDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQ 91
           + +      ++    K     ++ D    +      +          + L    + L Y 
Sbjct: 28  LAERHYYNCDFKMCYKLTSVVMEKD---PFHASCLPV-----HIGTLVELNKA-NELFYL 78

Query: 92  VKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLK 151
             K ++L            +   +G  Y  +  +++        A++Y   A  L     
Sbjct: 79  SHKLVDLYPSNPV------SWFAVGCYYLMVGHKNEH-------ARRYLSKATTL----- 120

Query: 152 ENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRL 211
                        Y  A    G         ++A        ++           G    
Sbjct: 121 -EK---------TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL---------MKGCHLP 161

Query: 212 HHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILC 271
              +G  Y        +     Q + I  +      +      +G + ++  ++  A   
Sbjct: 162 MLYIGLEYGLTNNSKLAERFFSQALSIAPE------DPFVMHEVGVVAFQNGEWKTAEKW 215

Query: 272 YQKALNLAQSMEDE 285
           +  AL   +++ +E
Sbjct: 216 FLDALEKIKAIGNE 229

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 68.1 bits (167), Expect = 4e-12
 Identities = 32/264 (12%), Positives = 78/264 (29%), Gaps = 46/264 (17%)

Query: 10  EAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLP 69
            A+R    A         A W    G       E+ +A+      Y  + + +   HL  
Sbjct: 109 HARRYLSKATTLEKTYGPA-WIA-YGHSFAVESEHDQAMA----AYFTAAQLMKGCHL-- 160

Query: 70  TCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDD 129
               +G  Y    + K A  +   + L +A +            ++G   ++        
Sbjct: 161 PMLYIGLEYGLTNNSKLAERF-FSQALSIAPEDPF------VMHEVGVVAFQN------- 206

Query: 130 HYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFL 189
                   ++  +       L++  A      + ++    NN+G +  +L    EA  + 
Sbjct: 207 -------GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259

Query: 190 IRGLEIC-NEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGE 248
            + L +                 +  +G ++  +  ++ + ++    + + +       +
Sbjct: 260 RQALVLIPQNAST----------YSAIGYIHSLMGNFENAVDYFHTALGLRRD------D 303

Query: 249 AKGYINLGELHYRVQKYDEAILCY 272
                 LG          EA +  
Sbjct: 304 TFSVTMLGHCIEMYIGDSEAYIGA 327

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 48.4 bits (116), Expect = 7e-06
 Identities = 15/118 (12%), Positives = 33/118 (27%), Gaps = 16/118 (13%)

Query: 162 LKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYME 221
           L+E +D   ++        + +   K     +E          D   +          +E
Sbjct: 18  LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK---------DPFHASCLPVHIGTLVE 68

Query: 222 LRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRV-QKYDEAILCYQKALNL 278
           L   ++      + + +             +  +G  +  V  K + A     KA  L
Sbjct: 69  LNKANELFYLSHKLVDLYPS------NPVSWFAVGCYYLMVGHKNEHARRYLSKATTL 120

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 48.4 bits (116), Expect = 8e-06
 Identities = 31/182 (17%), Positives = 57/182 (31%), Gaps = 35/182 (19%)

Query: 7   QMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFR--IDYD-VSVKYLP 63
               A+R +  A               +G +    GE+  A KWF   ++        + 
Sbjct: 174 NSKLAERFFSQALSIAPEDPFV-MHE-VGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT 231

Query: 64  EKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMF 123
                P   +LG V  +L+ + +AL Y  ++ L L    +         + +G  +  M 
Sbjct: 232 VDKWEPLLNNLGHVCRKLKKYAEALDY-HRQALVLIPQNAS------TYSAIGYIHSLM- 283

Query: 124 LRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLE 183
                 ++   NA  YF +A+ L                 +   +   +G          
Sbjct: 284 -----GNFE--NAVDYFHTALGL------RR---------DDTFSVTMLGHCIEMYIGDS 321

Query: 184 EA 185
           EA
Sbjct: 322 EA 323

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 46.9 bits (112), Expect = 3e-05
 Identities = 39/299 (13%), Positives = 79/299 (26%), Gaps = 61/299 (20%)

Query: 233 EQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQI 292
             + +I + ++  Q      ++L E HY    +          +                
Sbjct: 6   PSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP------------ 53

Query: 293 DQNIETVKKAIEVMDELKKEEQNLKKLTRNMI----------IAKGTSQERKYLLQQNAS 342
             +   +   I  + EL K  + L  L+  ++           A G      Y L     
Sbjct: 54  -FHASCLPVHIGTLVELNKANE-LFYLSHKLVDLYPSNPVSWFAVGC-----YYLMVGHK 106

Query: 343 LDRLIE---KSSMI-----FAW-LKHCEYAKRKK--------RIASELCDKGKLSDSFLV 385
            +       K++ +      AW      +A   +          A++L          L 
Sbjct: 107 NEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLY 164

Query: 386 IGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQE 445
           IG  Y        A ++++++  +                +G V   NG+W  A   F +
Sbjct: 165 IGLEYGLTNNSKLAERFFSQALSIAPE------DPFVMHEVGVVAFQNGEWKTAEKWFLD 218

Query: 446 GYRIAVEANLPSVQ---LSALENMHYSHMIRFDNIEEARRLQHEIDKLKESKSEDLEAY 501
                               L N+ +    +     EA        +      ++   Y
Sbjct: 219 ALEKIKAIGNEVTVDKWEPLLNNLGHVCR-KLKKYAEA---LDYHRQALVLIPQNASTY 273

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 88.0 bits (218), Expect = 8e-19
 Identities = 32/275 (11%), Positives = 76/275 (27%), Gaps = 54/275 (19%)

Query: 177 MELDNLEEAKKFLIRGLEICN--EEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQ 234
           +    + EA + + +  +       +   D D  +  +      +   +  +++++   Q
Sbjct: 2   IAAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQ 61

Query: 235 DIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQ 294
           +             AK +   G +   +Q+  EA+   +KA  +       D  A     
Sbjct: 62  EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAA----- 116

Query: 295 NIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIF 354
               + +A ++M+ L   +                                         
Sbjct: 117 --MALDRAGKLMEPLDLSKA---------------------------------------- 134

Query: 355 AWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIG 414
                    ++   +        + ++          + +KF++A     K   MYK + 
Sbjct: 135 -----VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME 189

Query: 415 NLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRI 449
           N        +    V     D+  A    +E Y I
Sbjct: 190 NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSI 224

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 61.8 bits (150), Expect = 3e-10
 Identities = 39/343 (11%), Positives = 96/343 (27%), Gaps = 78/343 (22%)

Query: 7   QMSEAKRAYRSA---------KEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDV 57
           ++SEA      A         K + +    A          KN  +  +A   +  + + 
Sbjct: 6   KISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEA 65

Query: 58  SVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGR 117
                   H     +  G +   L+   +A+ Y ++K   +  +         A  + G+
Sbjct: 66  HANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQY-IEKASVMYVENGTPDTAAMALDRAGK 124

Query: 118 TYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQM 177
                    +    S   A   ++ A  + +  +     +         +       L +
Sbjct: 125 LM-------EPLDLS--KAVHLYQQAAAVFENEERLRQAA---------ELIGKASRLLV 166

Query: 178 ELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDII 237
                +EA                                              ++++  
Sbjct: 167 RQQKFDEA-------------------------------------------AASLQKEKS 183

Query: 238 ICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDA------LASQ 291
           + K++E+     K  I    +      Y  A  C +++ ++      ED       L + 
Sbjct: 184 MYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAY 243

Query: 292 IDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERK 334
            +Q+ E + +       +   + +  KL  ++ +  G   ++K
Sbjct: 244 DEQDEEQLLRVCRS-PLVTYMDNDYAKLAISLKVPGGGGGKKK 285

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 16/104 (15%), Positives = 34/104 (32%)

Query: 363 AKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALA 422
              K        D    +  +     +++  ++  +A   Y +  E + +  +L   A A
Sbjct: 19  KYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKA 78

Query: 423 KVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENM 466
               G +L        A+   ++   + VE   P     AL+  
Sbjct: 79  FEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 90.7 bits (225), Expect = 1e-18
 Identities = 44/249 (17%), Positives = 81/249 (32%), Gaps = 46/249 (18%)

Query: 32  NVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQ 91
            +    L   GE  +         +  V   PEK +  T  ++G  YL +    +A  Y 
Sbjct: 343 PLHLASLHESGEKNKLYL----ISNDLVDRHPEKAV--TWLAVGIYYLCVNKISEARRY- 395

Query: 92  VKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLK 151
             K   +            A      ++         +H     A   + +A +L     
Sbjct: 396 FSKSSTMDPQFGP------AWIGFAHSFAIE-----GEH---DQAISAYTTAARL----- 436

Query: 152 ENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRL 211
                            +  +GM  M+L N+  A ++L     +          D    L
Sbjct: 437 -FQ---------GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-------QYD--PLL 477

Query: 212 HHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGE-AKGYINLGELHYRVQKYDEAIL 270
            + LG V         +  H +  +++ KK +  +   A  + NLG  + +++ YD AI 
Sbjct: 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID 537

Query: 271 CYQKALNLA 279
              + L L+
Sbjct: 538 ALNQGLLLS 546

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 70.6 bits (173), Expect = 2e-12
 Identities = 60/449 (13%), Positives = 118/449 (26%), Gaps = 94/449 (20%)

Query: 10  EAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLP 69
            AK  Y+ A     +  EA    V   +L    E+   LK   ++Y    K      L  
Sbjct: 218 RAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLK---LNYSTYSKEDAA-FLRS 273

Query: 70  TCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGR-----TYYEMFL 124
                       +  + A  Y       L K +  L+ +        R           L
Sbjct: 274 LYMLKLNKTSHEDELRRAEDYL-SSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKIL 332

Query: 125 RSDDDHYSIRN-------AKKYFKSAMKLAQTL-KENPATSRSSFLKEYIDAHNNIGMLQ 176
             D  +  +                   ++  L   +P         E       +G+  
Sbjct: 333 EIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP---------EKAVTWLAVGIYY 383

Query: 177 MELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDI 236
           + ++ + EA+++  +   +       +   G +       + +      D++       I
Sbjct: 384 LCVNKISEARRYFSKSSTM-------DPQFGPA--WIGFAHSFAIEGEHDQA-------I 427

Query: 237 IICKK-IEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALA------ 289
                     QG    Y+ LG  H ++     A    Q +  L       D L       
Sbjct: 428 SAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF----QYDPLLLNELGV 483

Query: 290 -----SQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLD 344
                S +   I   + A+ ++ + +  E+       N+  A                  
Sbjct: 484 VAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHA------------------ 525

Query: 345 RLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYT 404
                    +  LK  + A         L      ++    I   Y   +    AI    
Sbjct: 526 ---------YRKLKMYDAAIDALNQGLLL--STNDANVHTAIALVYLHKKIPGLAITHLH 574

Query: 405 KSWEMYKSIGNLEGQALAKVNMGNVLDSN 433
           +S  +  +      + +A   +   L+ N
Sbjct: 575 ESLAISPN------EIMASDLLKRALEEN 597

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 69.9 bits (171), Expect = 3e-12
 Identities = 37/281 (13%), Positives = 81/281 (28%), Gaps = 54/281 (19%)

Query: 1   MGRDEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFR--IDYDVS 58
           +G       + K A +   ++G  + EA    + G +  N   +  A + ++  +  D  
Sbjct: 173 LGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-- 230

Query: 59  VKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRT 118
                       C    E + +L      L    +  L L  + S   ++  A     R+
Sbjct: 231 ----------AKCY---EAFDQLVS-NHLLTADEEWDLVLKLNYSTYSKEDAAFL---RS 273

Query: 119 YYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQME 178
            Y + L       +  + +   + A     ++             +  D           
Sbjct: 274 LYMLKL-------NKTSHEDELRRAEDYLSSINGLE---------KSSDLLLCKADTLFV 317

Query: 179 LDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIII 238
                +      + LEI         D     ++        E    +K         +I
Sbjct: 318 RSRFIDVLAITTKILEI---------DPYNLDVYPLHLASLHESGEKNKL-------YLI 361

Query: 239 CKK-IEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNL 278
               ++    +A  ++ +G  +  V K  EA   + K+  +
Sbjct: 362 SNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM 402

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 67.2 bits (164), Expect = 2e-11
 Identities = 49/422 (11%), Positives = 116/422 (27%), Gaps = 59/422 (13%)

Query: 40  NRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELA 99
            + +Y  A            K L           L +VY     +  A    + K     
Sbjct: 96  MQQQYKCAAFVGE-------KVLDITGNPNDAFWLAQVYCCTGDYARAKCL-LTKEDLYN 147

Query: 100 KDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRS 159
           + ++          +L    ++  L    +    R  +K     +     +K   +    
Sbjct: 148 RSSACRYLAAFCLVKLYD--WQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEAS---- 201

Query: 160 SFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVY 219
                        G +   L N + AK+     L +         D         L + +
Sbjct: 202 --------MCYLRGQVYTNLSNFDRAKECYKEALMV---------DAKCYEAFDQLVSNH 244

Query: 220 MELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLA 279
           +   +       +   +      +      +    L       +        Y  ++N  
Sbjct: 245 L---LTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL 301

Query: 280 QSMEDEDALASQIDQNIETVK--KAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLL 337
           +  +  D L  + D      +    + +  ++ + +     +    + +   S E+  L 
Sbjct: 302 E--KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLY 359

Query: 338 QQNASLDRLIE-KSSMIFAWL-KHCEYAKRKK--------RIASELCDKGKLSDSFLVIG 387
                 + L++        WL     Y    K          +S +    +   +++   
Sbjct: 360 ---LISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--DPQFGPAWIGFA 414

Query: 388 ESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGY 447
            S+    + ++AI  YT +  +++      G  L  + +G      G+   A +  Q  Y
Sbjct: 415 HSFAIEGEHDQAISAYTTAARLFQ------GTHLPYLFLGMQHMQLGNILLANEYLQSSY 468

Query: 448 RI 449
            +
Sbjct: 469 AL 470

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 88.8 bits (220), Expect = 3e-18
 Identities = 74/520 (14%), Positives = 156/520 (30%), Gaps = 103/520 (19%)

Query: 1   MGRDEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVK 60
           +   E  + + +       E  NR+ +A   N++  +   +G+   AL+  R   ++  +
Sbjct: 24  LMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQ 83

Query: 61  YLP---EKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASD--------LVEQQ 109
                 E   L T  +   VY  +    D  IY  K      K +S           E+ 
Sbjct: 84  EHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEG 143

Query: 110 RACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAH 169
               + G    E              AK  F+ A      L++ P         +  +  
Sbjct: 144 WTRLKCGGNQNE-------------RAKVCFEKA------LEKKP---------KNPEFT 175

Query: 170 NNIGMLQMELDNL---EEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWD 226
           + + +    LDN    + A   L + + +      + D+     L   L     ++R   
Sbjct: 176 SGLAIASYRLDNWPPSQNAIDPLRQAIRL------NPDN---QYLKVLLALKLHKMR--- 223

Query: 227 KSREHIEQDIIICKK-IEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDE 285
           +  E   +   + ++ +E   G      +  + + R  + D+AI   +KAL       + 
Sbjct: 224 EEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP--NNA 281

Query: 286 DALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDR 345
                                         +    R  +      +E     ++      
Sbjct: 282 YLH-------------------------CQIGCCYRAKVFQVMNLRENGMYGKRKL--LE 314

Query: 346 LIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTK 405
           LI  +      + H + A               L     ++   +    ++ +A  ++ K
Sbjct: 315 LIGHA------VAHLKKADEA---------NDNLFRVCSILASLHALADQYEEAEYYFQK 359

Query: 406 SWEMYKSIGNLEGQALAKVNMGNVL-DSNGDWAGALDAFQEGYRIAVEANLPSVQLSALE 464
            +   K +  +  Q L  +  GN           A+  F EG +I  ++         L+
Sbjct: 360 EFS--KELTPVAKQLLH-LRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQ 416

Query: 465 NMHYSHMIRFDNIEEARRLQHEIDKLKESKSEDLEAYDVA 504
            +    + +     EA  +   + +L E   +  E  +  
Sbjct: 417 KIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERG 456

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 79.2 bits (195), Expect = 3e-15
 Identities = 39/299 (13%), Positives = 83/299 (27%), Gaps = 54/299 (18%)

Query: 7   QMSEAKRAYRSAKEEGNRQEEARW--ANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPE 64
               A    R A       +  +   A  +  + +   E  E  K      + +     +
Sbjct: 190 PSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV-TD 248

Query: 65  KHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFL 124
                  +S  + Y R +    A+   +KK LE   + +          Q+G  Y     
Sbjct: 249 VL-----RSAAKFYRRKDEPDKAIEL-LKKALEYIPNNAY------LHCQIGCCYRAKVF 296

Query: 125 RSDDDHYSIRNAKKYFKSAMKLA-----QTLKENPATSRSSFLKEYIDAHNNIGMLQMEL 179
           +  +   +    K+     +  A     +  + N                + +  L    
Sbjct: 297 QVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND---------NLFRVCSILASLHALA 347

Query: 180 DNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNV-YMELRMWDKSREHIEQDI-- 236
           D  EEA+ +  +                +  LH   GN    +++  DK+  H  + +  
Sbjct: 348 DQYEEAEYYFQKEFSK------ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401

Query: 237 ----------------IICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLA 279
                           I   ++     +++    L  L    +K  +A    ++ L   
Sbjct: 402 NQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 49.9 bits (119), Expect = 5e-06
 Identities = 30/353 (8%), Positives = 97/353 (27%), Gaps = 60/353 (16%)

Query: 171 NIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSRE 230
           N+   +  LD+ E+          +    E  ++ + ++ + + L  +       + + E
Sbjct: 23  NLMEGENSLDDFEDK---------VFYRTEF-QNREFKATMCNLLAYLKHLKGQNEAALE 72

Query: 231 HIEQDIIICKKIEHCQGEAK---GYINLGELHYRVQKYDEAILCYQKALNL------AQS 281
            + +   + ++    Q E +    + N   ++Y + +  +  +   K  ++         
Sbjct: 73  CLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132

Query: 282 MEDEDALASQ----IDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLL 337
           +E  +    +    +       ++A    ++  +++    + T  + IA           
Sbjct: 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQ 192

Query: 338 QQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFN 397
                L + I  +          +    K  +A +L    +  +             +  
Sbjct: 193 NAIDPLRQAIRLNP---------DNQYLKVLLALKLHKMREEGE-------------EEG 230

Query: 398 KAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVE----- 452
           +  K   ++ E                +         +   A++  ++            
Sbjct: 231 EGEKLVEEALEKAPG------VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284

Query: 453 ---ANLPSVQLSALENMHYSHMIRFDNIEEARRLQHEI-DKLKESKSEDLEAY 501
                    ++  + N+  + M     + E          K  E+        
Sbjct: 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVC 337

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 86.3 bits (214), Expect = 2e-17
 Identities = 57/453 (12%), Positives = 122/453 (26%), Gaps = 77/453 (16%)

Query: 7   QMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKH 66
             ++A          G+    +       + +  R    +A+K   ++ ++S        
Sbjct: 108 NFTDAMFDLSVLSLNGDFDGAS------IEPMLERNLNKQAMK--VLNENLSKDEGRGSQ 159

Query: 67  LLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRS 126
           +LP   S   +      F   L                      A   L      ++  +
Sbjct: 160 VLP---SNTSLASFFGIFDSHLEVSSVNTSS---------NYDTAYALLSDALQRLYSAT 207

Query: 127 DDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAK 186
           D+ +          KS       L  N         +    A    G+     +NL +A+
Sbjct: 208 DEGYL--VANDLLTKSTDMYHSLLSANTVDDPLR--ENAALALCYTGIFHFLKNNLLDAQ 263

Query: 187 KFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQ 246
             L   + +                +  L     +     +  +  +      K ++   
Sbjct: 264 VLLQESINL----------HPTPNSYIFLALTLADKENSQEFFKFFQ------KAVDLNP 307

Query: 247 GEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALA----SQIDQNIETVKKA 302
                Y + G++++ +Q Y  A   +QKA +L      E+       + +        ++
Sbjct: 308 EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL----NPENVYPYIQLACLLYKQGKFTES 363

Query: 303 IEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQN-----ASLDRLIEKSSMIFAWL 357
               +E K +   L ++                  + +        D             
Sbjct: 364 EAFFNETKLKFPTLPEVPTFFAEI--------LTDRGDFDTAIKQYDIAKRLEE------ 409

Query: 358 KHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLE 417
                 K    I   +  K  +         +     KFN AIK  TK+ E+        
Sbjct: 410 ---VQEKIHVGIGPLI-GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS---- 461

Query: 418 GQALAKVNMGNVLDSNGDWAGALDAFQEGYRIA 450
               AK+ +  +         A++ F++   +A
Sbjct: 462 --EQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 75.9 bits (187), Expect = 3e-14
 Identities = 32/294 (10%), Positives = 87/294 (29%), Gaps = 59/294 (20%)

Query: 34  IGDILKNRGEYVEALKWF----RIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALI 89
           +   L ++    E  K+F     ++ +    Y             G++Y  L+ +K+A  
Sbjct: 282 LALTLADKENSQEFFKFFQKAVDLNPEYPPTYY----------HRGQMYFILQDYKNAKE 331

Query: 90  YQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQT 149
              +K   L  +            QL    Y+              ++ +F         
Sbjct: 332 D-FQKAQSLNPENVY------PYIQLACLLYKQ--------GKFTESEAFFNETKLK--- 373

Query: 150 LKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEE-------VS 202
               P            +       +  +  + + A K       +   +E         
Sbjct: 374 ---FP---------TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPL 421

Query: 203 EDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRV 262
                      +     ++   ++ + + + +   +  +        +  I L +L  ++
Sbjct: 422 IGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS------EQAKIGLAQLKLQM 475

Query: 263 QKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNL 316
           +K DEAI  ++ +  LA++   ++ L +        ++K +     +  + +  
Sbjct: 476 EKIDEAIELFEDSAILART--MDEKLQATTFAEAAKIQKRLRADPIISAKMELT 527

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 74.0 bits (182), Expect = 2e-13
 Identities = 52/451 (11%), Positives = 112/451 (24%), Gaps = 94/451 (20%)

Query: 30  WANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALI 89
           ++N I     + G+  + ++        +++  P+                L +F DA+ 
Sbjct: 62  YSN-ISACYISTGDLEKVIE----FTTKALEIKPD--HSKALLRRASANESLGNFTDAMF 114

Query: 90  -YQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSD--------DDHYSIRNAKKYF 140
              V         AS     +R   +         L  D          + S+ +    F
Sbjct: 115 DLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174

Query: 141 KSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDN--LEEAKKFLIRGLEICNE 198
            S ++++     +   +  + L + +    +       + N  L ++       L     
Sbjct: 175 DSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV 234

Query: 199 EEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGEL 258
           ++     +  +      G  +        ++  +++ I +             YI L   
Sbjct: 235 DD--PLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL-------HPTPNSYIFLALT 285

Query: 259 HYRVQKYDEAILCYQKAL-----------NLAQSMEDEDALASQIDQNIETVKKAIEVMD 307
               +   E    +QKA+           +  Q                E  +KA     
Sbjct: 286 LADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQ----DYKNAKEDFQKAQS--- 338

Query: 308 ELKKEEQNLKKLTRNMIIA---KGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAK 364
                      L    +              LL +                        K
Sbjct: 339 -----------LNPENVYPYIQLA------CLLYKQGKFTESEA----------FFNETK 371

Query: 365 RKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEM-------YKSIGNLE 417
            K            L +      E       F+ AIK Y  +  +       +  IG L 
Sbjct: 372 LKFP---------TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI 422

Query: 418 GQAL---AKVNMGNVLDSNGDWAGALDAFQE 445
           G+A     + +          +  A+    +
Sbjct: 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTK 453

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 64.4 bits (157), Expect = 1e-10
 Identities = 47/416 (11%), Positives = 110/416 (26%), Gaps = 59/416 (14%)

Query: 42  GEYVEALKWFRIDYDVSVKYLPEKH--LLPTCQSLGEVYLRLEHFKDALIYQVKKHLELA 99
           G ++        D        P +        ++ G  +   ++F +A+ Y  +  +EL 
Sbjct: 1   GSHMNGEP----DIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKY-YQYAIELD 55

Query: 100 KDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRS 159
            +           + +   Y                  ++   A+++       P     
Sbjct: 56  PNEPV------FYSNISACYIST------GDLE--KVIEFTTKALEI------KP----- 90

Query: 160 SFLKEYIDAHNNIGMLQMELDNLEEAKK-FLIRGLEICNEEEVSEDDDGRSRLHHNLGNV 218
               ++  A          L N  +A     +  L    +    E    R+     +  +
Sbjct: 91  ----DHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVL 146

Query: 219 YMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNL 278
              L   +     +         +    G    ++ +  +      YD A      AL  
Sbjct: 147 NENLSKDEGRGSQVLPSN---TSLASFFGIFDSHLEVSSV-NTSSNYDTAYALLSDALQR 202

Query: 279 AQSMEDEDALASQ--IDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYL 336
             S  DE  L +   + ++ +     +          +N         I       +  L
Sbjct: 203 LYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFH---FLKNNL 259

Query: 337 LQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRI--ASELCDKG-----KLSDSFLVIGES 389
           L     L   I       +++        K+      +   K      +   ++   G+ 
Sbjct: 260 LDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQM 319

Query: 390 YQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQE 445
           Y  L+ +  A + + K+  +              + +  +L   G +  +   F E
Sbjct: 320 YFILQDYKNAKEDFQKAQSLNPEN------VYPYIQLACLLYKQGKFTESEAFFNE 369

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 83.7 bits (208), Expect = 6e-17
 Identities = 52/277 (18%), Positives = 99/277 (35%), Gaps = 55/277 (19%)

Query: 3   RDEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYL 62
           +   ++ EAK  Y  A E       A W+N +G +   +GE   A+      ++ +V   
Sbjct: 146 KALGRLEEAKACYLKAIETQPNFAVA-WSN-LGCVFNAQGEIWLAIH----HFEKAVTLD 199

Query: 63  PEKHLLPTCQSLGEVYLRLEHFKDALI-YQVKKHLELAKDASDLVEQQRACTQLGRTYYE 121
           P    L    +LG V      F  A+  Y   + L L+ + +           L   YYE
Sbjct: 200 PN--FLDAYINLGNVLKEARIFDRAVAAY--LRALSLSPNHAV------VHGNLACVYYE 249

Query: 122 MFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDN 181
                D        A   ++ A++L       P          + DA+ N+     E  +
Sbjct: 250 Q-GLIDL-------AIDTYRRAIEL------QP---------HFPDAYCNLANALKEKGS 286

Query: 182 LEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKK 241
           + EA+      L +             +   +NL N+  E    +++     + + +  +
Sbjct: 287 VAEAEDCYNTALRL---------CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337

Query: 242 IEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNL 278
                  A  + NL  +  +  K  EA++ Y++A+ +
Sbjct: 338 F------AAAHSNLASVLQQQGKLQEALMHYKEAIRI 368

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 83.4 bits (207), Expect = 7e-17
 Identities = 63/311 (20%), Positives = 105/311 (33%), Gaps = 70/311 (22%)

Query: 7   QMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKH 66
           Q+ EA   YR A        +  + N +   L   G+   A++     Y  +++Y P   
Sbjct: 82  QLQEAIEHYRHALRLKPDFIDG-YIN-LAAALVAAGDMEGAVQ----AYVSALQYNP--D 133

Query: 67  LLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRS 126
           L      LG +   L   ++A      K +E   + +       A + LG  +       
Sbjct: 134 LYCVRSDLGNLLKALGRLEEAKACY-LKAIETQPNFAV------AWSNLGCVFNAQ-GEI 185

Query: 127 DDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAK 186
                    A  +F+ A+ L      +P          ++DA+ N+G +  E    + A 
Sbjct: 186 WL-------AIHHFEKAVTL------DP---------NFLDAYINLGNVLKEARIFDRAV 223

Query: 187 KFLIRGLEIC-NEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHC 245
              +R L +  N   V          H NL  VY E  + D + +   + I +       
Sbjct: 224 AAYLRALSLSPNHAVV----------HGNLACVYYEQGLIDLAIDTYRRAIELQPHF--- 270

Query: 246 QGEAKGYINLGELHYRVQKYDEAILCYQKAL-----------NLAQSMEDEDALASQIDQ 294
                 Y NL           EA  CY  AL           NLA    ++      I++
Sbjct: 271 ---PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG----NIEE 323

Query: 295 NIETVKKAIEV 305
            +   +KA+EV
Sbjct: 324 AVRLYRKALEV 334

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 83.0 bits (206), Expect = 1e-16
 Identities = 46/272 (16%), Positives = 97/272 (35%), Gaps = 53/272 (19%)

Query: 7   QMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKH 66
           ++  +      A ++     EA ++N +G++ K RG+  EA++     Y  +++  P+  
Sbjct: 48  RLDRSAHFSTLAIKQNPLLAEA-YSN-LGNVYKERGQLQEAIE----HYRHALRLKPDFI 101

Query: 67  LLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRS 126
                 +L    +     + A+       L+   D           + LG     +  R 
Sbjct: 102 --DGYINLAAALVAAGDMEGAVQAY-VSALQYNPDLYC------VRSDLGNLLKAL-GRL 151

Query: 127 DDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAK 186
           ++       AK  +  A++        P          +  A +N+G +      +  A 
Sbjct: 152 EE-------AKACYLKAIET------QP---------NFAVAWSNLGCVFNAQGEIWLAI 189

Query: 187 KFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQ 246
               + + +         D      + NLGNV  E R++D++     + + +        
Sbjct: 190 HHFEKAVTL---------DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH---- 236

Query: 247 GEAKGYINLGELHYRVQKYDEAILCYQKALNL 278
             A  + NL  ++Y     D AI  Y++A+ L
Sbjct: 237 --AVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 80.7 bits (200), Expect = 6e-16
 Identities = 45/276 (16%), Positives = 84/276 (30%), Gaps = 61/276 (22%)

Query: 7   QMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFR----IDYDVSVKYL 62
               A+R       +           ++  I         +  +       +  ++  Y 
Sbjct: 14  DFEAAERHCMQLWRQEPDNTGVL--LLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYS 71

Query: 63  PEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEM 122
                     +LG VY      ++A+ +  +  L L  D  D          L       
Sbjct: 72  ----------NLGNVYKERGQLQEAIEH-YRHALRLKPDFID------GYINLAAALVAA 114

Query: 123 FLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNL 182
               +        A + + SA++       NP         +     +++G L   L  L
Sbjct: 115 G-DMEG-------AVQAYVSALQY------NP---------DLYCVRSDLGNLLKALGRL 151

Query: 183 EEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKI 242
           EEAK   ++ +E              +    NLG V+        +  H E+ + +    
Sbjct: 152 EEAKACYLKAIET---------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 202

Query: 243 EHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNL 278
                    YINLG +    + +D A+  Y +AL+L
Sbjct: 203 ------LDAYINLGNVLKEARIFDRAVAAYLRALSL 232

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 76.4 bits (189), Expect = 1e-14
 Identities = 33/249 (13%), Positives = 82/249 (32%), Gaps = 52/249 (20%)

Query: 30  WANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALI 89
               +       G++  A +          +  P+         L  ++ +      +  
Sbjct: 2   PME-LAHREYQAGDFEAAER----HCMQLWRQEPDNT--GVLLLLSSIHFQCRRLDRSAH 54

Query: 90  YQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQT 149
           +     ++     ++      A + LG  Y E   +  +       A ++++ A++L   
Sbjct: 55  F-STLAIKQNPLLAE------AYSNLGNVYKERG-QLQE-------AIEHYRHALRL--- 96

Query: 150 LKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRS 209
               P         ++ID + N+    +   ++E A +  +  L+          +    
Sbjct: 97  ---KP---------DFIDGYINLAAALVAAGDMEGAVQAYVSALQY---------NPDLY 135

Query: 210 RLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAI 269
            +  +LGN+   L   ++++    + I            A  + NLG +     +   AI
Sbjct: 136 CVRSDLGNLLKALGRLEEAKACYLKAIETQPNF------AVAWSNLGCVFNAQGEIWLAI 189

Query: 270 LCYQKALNL 278
             ++KA+ L
Sbjct: 190 HHFEKAVTL 198

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.5 bits (119), Expect = 5e-06
 Identities = 33/214 (15%), Positives = 63/214 (29%), Gaps = 49/214 (22%)

Query: 10  EAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLP 69
            A  AY  A             N +  +   +G    A+      Y  +++  P  H   
Sbjct: 221 RAVAAYLRALSLSPNHAVV-HGN-LACVYYEQGLIDLAID----TYRRAIELQP--HFPD 272

Query: 70  TCQSLGEVYLRLEHFKDALI-YQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDD 128
              +L           +A   Y     L L    +D      +   L     E     ++
Sbjct: 273 AYCNLANALKEKGSVAEAEDCYN--TALRLCPTHAD------SLNNLANIKREQ-GNIEE 323

Query: 129 DHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKF 188
                  A + ++ A+++       P         E+  AH+N+  +  +   L+EA   
Sbjct: 324 -------AVRLYRKALEV------FP---------EFAAAHSNLASVLQQQGKLQEALMH 361

Query: 189 LIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMEL 222
               + I             +  + N+GN   E+
Sbjct: 362 YKEAIRI---------SPTFADAYSNMGNTLKEM 386

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.8 bits (112), Expect = 4e-05
 Identities = 35/215 (16%), Positives = 69/215 (32%), Gaps = 41/215 (19%)

Query: 251 GYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDAL---------ASQIDQNIETVKK 301
           G + L    Y+   ++ A     +     Q  ++   L           ++D++      
Sbjct: 1   GPMELAHREYQAGDFEAAERHCMQLW--RQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTL 58

Query: 302 AIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQ-NASLDRLIE-KSSMIFAW--- 356
           AI+    L +   NL           G   + +  LQ+        +  K   I  +   
Sbjct: 59  AIKQNPLLAEAYSNL-----------GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINL 107

Query: 357 ------LKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMY 410
                     E A +    A +      L      +G   + L +  +A   Y K+ E  
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165

Query: 411 KSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQE 445
            +       A+A  N+G V ++ G+   A+  F++
Sbjct: 166 PNF------AVAWSNLGCVFNAQGEIWLAIHHFEK 194

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 81.7 bits (202), Expect = 5e-16
 Identities = 39/316 (12%), Positives = 86/316 (27%), Gaps = 56/316 (17%)

Query: 163 KEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMEL 222
            +Y  A  + G         ++A K+    LE+  +             + NL   Y+ +
Sbjct: 3   DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED----------PVFYSNLSACYVSV 52

Query: 223 RMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKAL-----N 277
               K  E   + + +          +K  +     +  + K+ +A+            N
Sbjct: 53  GDLKKVVEMSTKALELKPDY------SKVLLRRASANEGLGKFADAMFDLSVLSLNGDFN 106

Query: 278 LAQSMED-EDALA----SQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQE 332
            A      E  L     S++ +    +  A     EL  +    +K  +  + +  +   
Sbjct: 107 DASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166

Query: 333 RKYLLQQNASLDRLIE----KSSMIFAWLKHCEYAKRKKRIASELCDKG----------- 377
              + +   +     E       ++       + +      A E   K            
Sbjct: 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKN 226

Query: 378 --------KLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNV 429
                   KL+ S    G           A +   K+ E       L  +  + + M  +
Sbjct: 227 NEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE-------LFPRVNSYIYMALI 279

Query: 430 LDSNGDWAGALDAFQE 445
           +    D     + F +
Sbjct: 280 MADRNDSTEYYNYFDK 295

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 77.5 bits (191), Expect = 1e-14
 Identities = 45/450 (10%), Positives = 124/450 (27%), Gaps = 64/450 (14%)

Query: 7   QMSEAKRAYRSAKEEGNRQEEARWANV-IGDILKNRGEYVEALKWFRIDYDVSVKYLPEK 65
           + ++A          G+  + +    +      +   +  E       D D +     E 
Sbjct: 88  KFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFG----DIDTATATPTEL 143

Query: 66  HLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLR 125
              P          + +      +  +     + K          +          +   
Sbjct: 144 STQP------AKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNL 197

Query: 126 SDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEA 185
                 S   A + F  A +L +   +          ++   +  + G+ +   ++   A
Sbjct: 198 YKRSPESYDKADESFTKAARLFEEQLDKNNED-EKLKEKLAISLEHTGIFKFLKNDPLGA 256

Query: 186 KKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHC 245
            + + + +E+            R   +  +  +  +     +   + +      K ++  
Sbjct: 257 HEDIKKAIEL----------FPRVNSYIYMALIMADRNDSTEYYNYFD------KALKLD 300

Query: 246 QGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALA----SQIDQNIETVKK 301
              +  Y + G++++ +Q YD+A   + KA  L    + E+       + +         
Sbjct: 301 SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL----DPENIFPYIQLACLAYRENKFDD 356

Query: 302 AIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCE 361
              +  E K++     ++               +     A               LK  +
Sbjct: 357 CETLFSEAKRKFPEAPEVPNFFAEILTDKN--DF---DKA---------------LKQYD 396

Query: 362 YA-KRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQA 420
            A + + ++         L      +      +  F +A     K+ ++           
Sbjct: 397 LAIELENKLDGIYVGIAPLV-GKATLLTRNPTVENFIEATNLLEKASKLDPRS------E 449

Query: 421 LAKVNMGNVLDSNGDWAGALDAFQEGYRIA 450
            AK+ +  +     D   A+  F+E   +A
Sbjct: 450 QAKIGLAQMKLQQEDIDEAITLFEESADLA 479

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 77.1 bits (190), Expect = 1e-14
 Identities = 40/285 (14%), Positives = 96/285 (33%), Gaps = 52/285 (18%)

Query: 34  IGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALI-YQV 92
           +  I+ +R +  E        +D ++K              G++   L+++  A   +  
Sbjct: 276 MALIMADRNDSTEYYN----YFDKALKLDSNNS--SVYYHRGQMNFILQNYDQAGKDFD- 328

Query: 93  KKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKE 152
            K  EL  +            QL    Y              + +  F  A +       
Sbjct: 329 -KAKELDPENIF------PYIQLACLAYRE--------NKFDDCETLFSEAKRK------ 367

Query: 153 NPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLH 212
            P         E  +  N    +  + ++ ++A K     +E+ N+            ++
Sbjct: 368 FP---------EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL---------DGIY 409

Query: 213 HNLGNVYMELRMWD--KSREHIEQDIIICKK-IEHCQGEAKGYINLGELHYRVQKYDEAI 269
             +  +  +  +     + E+  +   + +K  +      +  I L ++  + +  DEAI
Sbjct: 410 VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAI 469

Query: 270 LCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQ 314
             ++++ +LA++   E+ L +        V++ I     L K+ Q
Sbjct: 470 TLFEESADLART--MEEKLQAITFAEAAKVQQRIRSDPVLAKKIQ 512

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 74.0 bits (182), Expect = 1e-13
 Identities = 44/354 (12%), Positives = 101/354 (28%), Gaps = 45/354 (12%)

Query: 119 YYEMFLRSDDDH--YSIR----NAKKYFKSAMKLA-QTLKENPATSRSSFLKEYIDAHNN 171
           YY   L   +D   YS       +    K  ++++ + L+  P         +Y      
Sbjct: 28  YYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP---------DYSKVLLR 78

Query: 172 IGMLQMELDNLEEAKK-FLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSRE 230
                  L    +A     +  L     +   E    R+     +  +  +    D +  
Sbjct: 79  RASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATA 138

Query: 231 HIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMED-----E 285
              +      K    + E    +      + + K +     Y ++    + + +      
Sbjct: 139 TPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLY 198

Query: 286 DALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIA---KGTSQERKYLLQQN-- 340
                  D+  E+  KA  + +E   +    +KL   + I+    G     K+L      
Sbjct: 199 KRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF---KFLKNDPLG 255

Query: 341 --ASLDRLIEKSSMIFAWLK--HCEYAKRKKRIASELCDKG-----KLSDSFLVIGESYQ 391
               + + IE    + +++        +          DK        S  +   G+   
Sbjct: 256 AHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNF 315

Query: 392 KLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQE 445
            L+ +++A K + K+ E+              + +  +      +      F E
Sbjct: 316 ILQNYDQAGKDFDKAKELDPEN------IFPYIQLACLAYRENKFDDCETLFSE 363

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 70.9 bits (174), Expect = 1e-12
 Identities = 53/451 (11%), Positives = 120/451 (26%), Gaps = 94/451 (20%)

Query: 34  IGDILKNRGEYVEALKWFRIDYDVSVKYLPE--KHLLPTCQSLGEVYLRLEHFKDALIY- 90
           +     + G+  + ++        +++  P+  K LL            L  F DA+   
Sbjct: 45  LSACYVSVGDLKKVVE----MSTKALELKPDYSKVLL----RRASANEGLGKFADAMFDL 96

Query: 91  ------------QVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKK 138
                        ++  LE   +   + + +     +          S       ++ ++
Sbjct: 97  SVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQE 156

Query: 139 YFKSAMKLAQTLKENPATSRSSFLKEYIDA-----HNNIGMLQMELDNLEEAKKFLIRGL 193
              S   +A            +   E  +A     +    + +   ++ ++A +   +  
Sbjct: 157 NLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAA 216

Query: 194 EICNE-----EEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGE 248
            +  E      E  +  +  +    + G           + E I++ I +  ++      
Sbjct: 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN----- 271

Query: 249 AKGYINLGELHYRVQKYDEAILCYQKAL-----------NLAQSMEDEDALASQIDQNIE 297
              YI +  +        E    + KAL           +  Q            DQ  +
Sbjct: 272 --SYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQ----NYDQAGK 325

Query: 298 TVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWL 357
              KA E+  E       L  L              K+    +                 
Sbjct: 326 DFDKAKELDPENIFPYIQLACLAYRE---------NKF---DDC---------------E 358

Query: 358 KHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEM---YKSIG 414
                AKRK           +  +      E       F+KA+K Y  + E+      I 
Sbjct: 359 TLFSEAKRKF---------PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY 409

Query: 415 NLEGQALAKVNMGNVLDSNGDWAGALDAFQE 445
                 + K  +     +  ++  A +  ++
Sbjct: 410 VGIAPLVGKATLLTRNPTVENFIEATNLLEK 440

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 75.2 bits (186), Expect = 5e-15
 Identities = 41/274 (14%), Positives = 84/274 (30%), Gaps = 55/274 (20%)

Query: 8   MSEAKRAYRSAKEEGNRQEEARW--ANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEK 65
           M  +   +  +     R                   G+Y +A +     +  +++   E 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAE----AFTKAIEENKED 56

Query: 66  HLLPTCQSLGEVYLRLEHFKDALI-YQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFL 124
            +     +   +   +   + AL  Y   K LEL   A+       A    G  Y     
Sbjct: 57  AI--PYINFANLLSSVNELERALAFY--DKALELDSSAAT------AYYGAGNVYVVKE- 105

Query: 125 RSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEE 184
              +       AK  F+ A++                  E  D    +G + ++L+  + 
Sbjct: 106 MYKE-------AKDMFEKALRA------GM---------ENGDLFYMLGTVLVKLEQPKL 143

Query: 185 AKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEH 244
           A  +L R +E+      +E+D   +      G       M D++               H
Sbjct: 144 ALPYLQRAVEL------NEND---TEARFQFGMCLANEGMLDEALSQFAAVTEQ--DPGH 192

Query: 245 CQGEAKGYINLGELHYRVQKYDEAILCYQKALNL 278
               A  + N G  +   +  ++A+    KA+++
Sbjct: 193 ----ADAFYNAGVTYAYKENREKALEMLDKAIDI 222

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 44.0 bits (105), Expect = 1e-04
 Identities = 38/217 (17%), Positives = 74/217 (34%), Gaps = 49/217 (22%)

Query: 7   QMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKH 66
           ++  A   Y  A E  +    A +    G++   +  Y EA       ++ +++   E  
Sbjct: 72  ELERALAFYDKALELDSSAATA-YYG-AGNVYVVKEMYKEAKD----MFEKALRAGMENG 125

Query: 67  LLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRS 126
                  LG V ++LE  K AL Y +++ +EL ++ ++      A  Q G          
Sbjct: 126 --DLFYMLGTVLVKLEQPKLALPY-LQRAVELNENDTE------ARFQFGMCLAN--EGM 174

Query: 127 DDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAK 186
            D+      A   F +  +       +P          + DA  N G+     +N E+A 
Sbjct: 175 LDE------ALSQFAAVTEQ------DP---------GHADAFYNAGVTYAYKENREKAL 213

Query: 187 KFLIRGLEIC-NEEEVSEDDDGRSRLHHNLGNVYMEL 222
           + L + ++I  +               H    +    
Sbjct: 214 EMLDKAIDIQPDHMLA----------LHAKKLLGHHH 240

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 77.8 bits (192), Expect = 7e-15
 Identities = 52/402 (12%), Positives = 121/402 (30%), Gaps = 78/402 (19%)

Query: 74  LGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSI 133
            G        +  + +  V+KHLEL K      +   A +      +   +  D D+Y  
Sbjct: 9   SGVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALS-----QFHAAVDGDPDNYIA 62

Query: 134 RN-------AKKYFKSAMK-LAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEA 185
                    A    K+A+  L + ++            ++  A    G L ++   L+EA
Sbjct: 63  YYRRATVFLAMGKSKAALPDLTKVIQLKM---------DFTAARLQRGHLLLKQGKLDEA 113

Query: 186 KKFLIRGLEICNEEEVSEDDDG------RSRLHHNLGNVYMELRMWDKSREHIEQDIIIC 239
           +    + L+    E   ++           +   +          +  +   ++      
Sbjct: 114 EDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD------ 167

Query: 240 KKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALAS--------- 290
           K +E C  +A+      E   +  +  +AI   + A  L     + +A            
Sbjct: 168 KILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKND--NTEAFYKISTLYYQLG 225

Query: 291 QIDQNIETVKKAIEV---MDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLI 347
             + ++  V++ +++           + +KKL + +  A+   ++ +Y    +A      
Sbjct: 226 DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRY---TDA------ 276

Query: 348 EKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSW 407
                        E       + +E         S   I   + K  K  +AI+  ++  
Sbjct: 277 ---------TSKYESV-----MKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322

Query: 408 EMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRI 449
           +M            A  +          +  A+  ++     
Sbjct: 323 QME------PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 73.2 bits (180), Expect = 2e-13
 Identities = 56/405 (13%), Positives = 125/405 (30%), Gaps = 67/405 (16%)

Query: 14  AYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQS 73
              +         +      +G  L   G+  +AL      +  +V   P+ ++      
Sbjct: 12  DLGTENLYFQSMADVEKHLELGKKLLAAGQLADALS----QFHAAVDGDPDNYI--AYYR 65

Query: 74  LGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSI 133
              V+L +   K AL   + K ++L  D +       A  Q G    +            
Sbjct: 66  RATVFLAMGKSKAALPD-LTKVIQLKMDFT------AARLQRGHLLLKQ------GKLD- 111

Query: 134 RNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGL 193
             A+  FK  +K   +  E           + +    +  +      +   A  FL + L
Sbjct: 112 -EAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL 170

Query: 194 EICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKK-IEHCQGEAKGY 252
           E+C  +         + L       +++     K+       I   K   +      + +
Sbjct: 171 EVCVWD---------AELRELRAECFIKEGEPRKA-------ISDLKAASKLKNDNTEAF 214

Query: 253 INLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKE 312
             +  L+Y++  ++ ++   ++ L L Q    +        + ++ + K IE  +EL ++
Sbjct: 215 YKISTLYYQLGDHELSLSEVRECLKLDQ----DHKRCFAHYKQVKKLNKLIESAEELIRD 270

Query: 313 EQN---LKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRI 369
            +      K    M      ++      ++                   HC     K   
Sbjct: 271 GRYTDATSKYESVMKTEPSIAEYTVRSKERIC-----------------HCFSKDEKPVE 313

Query: 370 ASELCDK-----GKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEM 409
           A  +C +         ++     E+Y     +++AI+ Y  + E 
Sbjct: 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 71.3 bits (175), Expect = 9e-13
 Identities = 38/334 (11%), Positives = 96/334 (28%), Gaps = 66/334 (19%)

Query: 165 YIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRM 224
           +   H++ G+     +   ++              +V +        H  LG   +    
Sbjct: 2   HHHHHHSSGVDLGTENLYFQSM------------ADVEK--------HLELGKKLLAAGQ 41

Query: 225 WDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMED 284
              +             ++        Y     +   + K   A+    K + L   M+ 
Sbjct: 42  LADALSQFH------AAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL--KMDF 93

Query: 285 EDALAS---------QIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKY 335
             A            ++D+  +  KK ++      +E++   +L ++  + +  SQ    
Sbjct: 94  TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNA 153

Query: 336 LLQQN-----ASLDRLIE-KSSMIFAWLKHCEYAKRKKRI--ASELCDK-----GKLSDS 382
               +     A LD+++E             E   ++     A              +++
Sbjct: 154 FGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEA 213

Query: 383 FLVIGESYQKLRKFNKAIKWYTK----------SWEMYKSIGNLEGQALAKVNMGNVLDS 432
           F  I   Y +L     ++    +           +  YK +  L       +     L  
Sbjct: 214 FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN----KLIESAEELIR 269

Query: 433 NGDWAGALDAFQEGYRIAVEANLPSVQLSALENM 466
           +G +  A   ++    +  E ++    + + E +
Sbjct: 270 DGRYTDATSKYESV--MKTEPSIAEYTVRSKERI 301

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 70.5 bits (173), Expect = 2e-12
 Identities = 31/272 (11%), Positives = 85/272 (31%), Gaps = 37/272 (13%)

Query: 14  AYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQS 73
             + A+ +  + +E +            G+Y  A+       D  ++       L   + 
Sbjct: 129 EEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA----FLDKILEVCVWDAEL--REL 182

Query: 74  LGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSI 133
             E +++    + A I  +K   +L  D ++      A  ++   YY++        +  
Sbjct: 183 RAECFIKEGEPRKA-ISDLKAASKLKNDNTE------AFYKISTLYYQL------GDHE- 228

Query: 134 RNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGL 193
             +    +  +KL Q   ++          + ++         +      +A       +
Sbjct: 229 -LSLSEVRECLKLDQ---DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVM 284

Query: 194 EICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKK-IEHCQGEAKGY 252
           +           +   R    + + + +     ++       I +C + ++         
Sbjct: 285 KTE-----PSIAEYTVRSKERICHCFSKDEKPVEA-------IRVCSEVLQMEPDNVNAL 332

Query: 253 INLGELHYRVQKYDEAILCYQKALNLAQSMED 284
            +  E +   + YDEAI  Y+ A    ++ + 
Sbjct: 333 KDRAEAYLIEEMYDEAIQDYETAQEHNENDQQ 364

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 66.6 bits (163), Expect = 2e-11
 Identities = 38/350 (10%), Positives = 103/350 (29%), Gaps = 53/350 (15%)

Query: 164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELR 223
           +   A+     + + +   + A   L + +++             +      G++ ++  
Sbjct: 58  DNYIAYYRRATVFLAMGKSKAALPDLTKVIQL---------KMDFTAARLQRGHLLLKQG 108

Query: 224 MWDKSREHIEQ---------DIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQK 274
             D++ +  ++         +    +       E +   +     +    Y  AI    K
Sbjct: 109 KLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK 168

Query: 275 ALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERK 334
            L +     +   L ++        +KAI  +    K + +  +    +           
Sbjct: 169 ILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLY------- 221

Query: 335 YLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKK---RIASELCDKGKLSDSFLVIGESYQ 391
           Y L          E S      L       +     +       + K  +  +   E   
Sbjct: 222 YQLGD-------HELS------LSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI 268

Query: 392 KLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAV 451
           +  ++  A   Y    +   S    E    +K  + +    +     A+    E     +
Sbjct: 269 RDGRYTDATSKYESVMKTEPS--IAEYTVRSKERICHCFSKDEKPVEAIRVCSE----VL 322

Query: 452 EANLPSVQLSALENMHYSHMIRFDNIEEARRLQHEIDKLKESKSEDLEAY 501
           +   P   ++AL++   +++I  +  +EA +   + +  +E    D +  
Sbjct: 323 QME-PDN-VNALKDRAEAYLIE-EMYDEAIQ---DYETAQEHNENDQQIR 366

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 75.4 bits (186), Expect = 2e-14
 Identities = 36/310 (11%), Positives = 95/310 (30%), Gaps = 67/310 (21%)

Query: 164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGR------SRLHHNLGN 217
           ++  A    G L ++   L+EA+    + L+    E+  ++ + +       +   +   
Sbjct: 69  DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQAL 128

Query: 218 VYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALN 277
              +   +  +   ++      K +E C  +A+      E   +  +  +AI   + A  
Sbjct: 129 DAFDGADYTAAITFLD------KILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK 182

Query: 278 LAQSMEDEDALAS---------QIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKG 328
           L    ++ +A              + ++  V++ +++  + K+   + K++         
Sbjct: 183 LKS--DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV--------- 231

Query: 329 TSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKG---------KL 379
                K L +   S + LI                  +   A+   +             
Sbjct: 232 -----KKLNKLIESAEELIR---------------DGRYTDATSKYESVMKTEPSVAEYT 271

Query: 380 SDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGA 439
             S   I   + K  K  +AI+  ++  +M            A  +          +  A
Sbjct: 272 VRSKERICHCFSKDEKPVEAIRICSEVLQME------PDNVNALKDRAEAYLIEEMYDEA 325

Query: 440 LDAFQEGYRI 449
           +  ++     
Sbjct: 326 IQDYEAAQEH 335

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 71.9 bits (177), Expect = 2e-13
 Identities = 35/319 (10%), Positives = 98/319 (30%), Gaps = 63/319 (19%)

Query: 10  EAKRAYRSAKE-------------EGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYD 56
           EA+  ++   +             +  + +E +          +  +Y  A+       D
Sbjct: 89  EAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAIT----FLD 144

Query: 57  VSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLG 116
             ++       L   +   E +++    + A+   +K   +L  D ++      A  ++ 
Sbjct: 145 KILEVCVWDAEL--RELRAECFIKEGEPRKAISD-LKAASKLKSDNTE------AFYKIS 195

Query: 117 RTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQ 176
             YY++        +    +    +  +KL Q   ++          + ++         
Sbjct: 196 TLYYQL------GDHE--LSLSEVRECLKLDQ---DHKRCFAHYKQVKKLNKLIESAEEL 244

Query: 177 MELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDI 236
           +      +A       ++           +   R    + + + +     ++       I
Sbjct: 245 IRDGRYTDATSKYESVMKT-----EPSVAEYTVRSKERICHCFSKDEKPVEA-------I 292

Query: 237 IICKK-IEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQN 295
            IC + ++          +  E +   + YDEAI  Y+ A    +   D+        + 
Sbjct: 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE--NDQQIR-----EG 345

Query: 296 IETVKKAIEVMDELKKEEQ 314
           +E  ++       LK+ ++
Sbjct: 346 LEKAQR------LLKQSQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 71.9 bits (177), Expect = 3e-13
 Identities = 37/320 (11%), Positives = 89/320 (27%), Gaps = 63/320 (19%)

Query: 166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMW 225
           ++ H  +G   +    L +A       ++   +             ++    V++ +   
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN---------YIAYYRRATVFLAMGKS 53

Query: 226 DKSREHIEQDIIICKK-IEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMED 284
             +       +    K I          +  G L  +  K DEA   ++K L        
Sbjct: 54  KAA-------LPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS------ 100

Query: 285 EDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLD 344
            +    +  +    + KA E+     +             I                 LD
Sbjct: 101 -NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAI---------------TFLD 144

Query: 345 RLIE---KSSMIFAWLKHCEYAKRKKRIASELCDK-----GKLSDSFLVIGESYQKLRKF 396
           +++E     + +      C   + + R A              +++F  I   Y +L   
Sbjct: 145 KILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDH 204

Query: 397 NKAIKWYTK----------SWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEG 446
             ++    +           +  YK +  L       +     L  +G +  A   ++  
Sbjct: 205 ELSLSEVRECLKLDQDHKRCFAHYKQVKKLN----KLIESAEELIRDGRYTDATSKYESV 260

Query: 447 YRIAVEANLPSVQLSALENM 466
             +  E ++    + + E +
Sbjct: 261 --MKTEPSVAEYTVRSKERI 278

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 72.7 bits (179), Expect = 5e-14
 Identities = 41/238 (17%), Positives = 82/238 (34%), Gaps = 43/238 (18%)

Query: 74  LGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSI 133
           LG  YL+  + + A    ++K LE+   ++D      A   L   +              
Sbjct: 43  LGLGYLQRGNTEQA-KVPLRKALEIDPSSAD------AHAALAVVFQT--EMEPKL---- 89

Query: 134 RNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGL 193
             A + ++ A+        +                NN G    E    EEA + L+   
Sbjct: 90  --ADEEYRKALAS------DS---------RNARVLNNYGGFLYEQKRYEEAYQRLLEAS 132

Query: 194 EICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYI 253
           +             RSR+  NLG V ++++   +++E+ E+ +    ++   Q      +
Sbjct: 133 Q-------DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSL----RLNRNQPSV--AL 179

Query: 254 NLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKK 311
            + +L Y+ ++Y  A   Y               L  ++ +  E    A     +LK+
Sbjct: 180 EMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 69.6 bits (171), Expect = 5e-13
 Identities = 34/285 (11%), Positives = 82/285 (28%), Gaps = 83/285 (29%)

Query: 10  EAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFR--IDYDVSVKYLPEKHL 67
              +      +  +   +A     +G     RG   +A    R  ++ D      P    
Sbjct: 21  MGDQNPLKTDKGRDEARDAY--IQLGLGYLQRGNTEQAKVPLRKALEID------PS--- 69

Query: 68  LPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSD 127
                   + +  L     A+++Q +   +LA +                  Y   L SD
Sbjct: 70  ------SADAHAAL-----AVVFQTEMEPKLADEE-----------------YRKALASD 101

Query: 128 DDHYSIRN--------------AKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIG 173
             +  + N              A +    A     TL    +               N+G
Sbjct: 102 SRNARVLNNYGGFLYEQKRYEEAYQRLLEA--SQDTLYPERS-----------RVFENLG 148

Query: 174 MLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIE 233
           ++ +++    +AK++  + L +         +  +  +   + ++  + R +  +R++ +
Sbjct: 149 LVSLQMKKPAQAKEYFEKSLRL---------NRNQPSVALEMADLLYKEREYVPARQYYD 199

Query: 234 QDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNL 278
                    +     A+  +    L    +  D A     +   L
Sbjct: 200 ------LFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 30/176 (17%), Positives = 59/176 (33%), Gaps = 25/176 (14%)

Query: 139 YFKSAMKLAQTLKENPATSRSSFLK-EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICN 197
           +  S +    +   +    ++   + E  DA+  +G+  ++  N E+AK  L + LEI  
Sbjct: 9   HHSSGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEI-- 66

Query: 198 EEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGE 257
                  D   +  H  L  V+        + E   + +    +       A+   N G 
Sbjct: 67  -------DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR------NARVLNNYGG 113

Query: 258 LHYRVQKYDEAILCYQKALNLAQSMEDEDAL---------ASQIDQNIETVKKAIE 304
             Y  ++Y+EA     +A       E                +  Q  E  +K++ 
Sbjct: 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR 169

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 41.9 bits (99), Expect = 8e-04
 Identities = 46/303 (15%), Positives = 87/303 (28%), Gaps = 80/303 (26%)

Query: 212 HHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILC 271
           HH+ G V          R     D    K  +        YI LG  + +    ++A + 
Sbjct: 9   HHSSGLVP---------RGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVP 59

Query: 272 YQKAL-----------NLAQSMEDEDALASQIDQNIETVKKAIEVMDELKK---EEQNLK 317
            +KAL            LA   + E     +     E  +KA+              N  
Sbjct: 60  LRKALEIDPSSADAHAALAVVFQTEM----EPKLADEEYRKALA----SDSRNARVLN-- 109

Query: 318 KLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKG 377
               N     G        L +    +   +               +     AS+     
Sbjct: 110 ----NY----GG------FLYEQKRYEEAYQ------------RLLE-----ASQDTLYP 138

Query: 378 KLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWA 437
           + S  F  +G    +++K  +A +++ KS  +         Q    + M ++L    ++ 
Sbjct: 139 ERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL-NR-----NQPSVALEMADLLYKEREYV 192

Query: 438 GALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEARRLQHEIDKLKESKSED 497
            A       Y +  +    + +  +L          F++ + A        +LK      
Sbjct: 193 PARQY----YDLFAQGGGQNAR--SLLLGIRLAK-VFEDRDTAASYG---LQLKRLYPGS 242

Query: 498 LEA 500
           LE 
Sbjct: 243 LEY 245

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 74.8 bits (184), Expect = 7e-14
 Identities = 51/473 (10%), Positives = 112/473 (23%), Gaps = 91/473 (19%)

Query: 10  EAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLP 69
                   A     +Q  A  A+      +        L         +    PE+ +  
Sbjct: 90  RLLPVLCQAHGLTPQQVVA-IAS-HDGGKQALETVQRLLP----VLCQAHGLTPEQVV-- 141

Query: 70  TCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGR-----TYYEMFL 124
              S       LE  +  L    + H    +    +         L              
Sbjct: 142 AIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAH 201

Query: 125 RSDDDHY-------SIRNAKKYFKSAMK-LAQTLKENPATSRSSFLKEYIDAHNNIGMLQ 176
                           + A +  +  +  L Q     P         + + A  + G  +
Sbjct: 202 GLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP---------QQVVAIASNGGGK 252

Query: 177 MELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDI 236
             L+ ++     L +   +  ++ V+           +       L    +    + Q  
Sbjct: 253 QALETVQRLLPVLCQAHGLTPQQVVA---------IASNSGGKQALETVQRLLPVLCQAH 303

Query: 237 IICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQ--IDQ 294
            +         +     + G     ++     +    +A  L    +   A+AS     Q
Sbjct: 304 GLT------PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP--QQVVAIASHDGGKQ 355

Query: 295 NIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIE-KSSMI 353
            +ETV++ + V+ +             +    K   Q  + + +    L +        +
Sbjct: 356 ALETVQRLLPVLCQAHGLTPEQVVAIASNGGGK---QALETVQRLLPVLCQAHGLTPEQV 412

Query: 354 FAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSI 413
            A   H                               Q L    + +    ++  +    
Sbjct: 413 VAIASH---------------------------DGGKQALETVQRLLPVLCQAHGLTPQ- 444

Query: 414 GNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENM 466
                Q +A  + G    +       L         A+ A   +  L AL  +
Sbjct: 445 -----QVVAIASNGGGRPALESIVAQLSRPDP----ALAAL-TNDHLVALACL 487

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 72.1 bits (177), Expect = 5e-13
 Identities = 50/468 (10%), Positives = 114/468 (24%), Gaps = 91/468 (19%)

Query: 3   RDEMQMSEAKRAYRSAKE----EGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVS 58
           R  +   EA  A+R+A          ++    A+      +        L         +
Sbjct: 44  RGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIAS-HDGGKQALETVQRLLP----VLCQA 98

Query: 59  VKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELA-KDASDLVEQQRACTQLGR 117
               P++ +     S       LE  +  L     +   L  +    +         L  
Sbjct: 99  HGLTPQQVV--AIASHDGGKQALETVQRLLPVL-CQAHGLTPEQVVAIASHDGGKQALET 155

Query: 118 -----TYYEMFLRSDDDHYSIRNAKKYFKSAMK--------LAQTLKENPATSRSSFLKE 164
                           +      +    K A++        L Q     P         +
Sbjct: 156 VQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP---------Q 206

Query: 165 YIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRM 224
            + A  + G  +  L+ ++     L +   +            +     + G     L  
Sbjct: 207 QVVAIASNGGGKQALETVQRLLPVLCQAHGL---------TPQQVVAIASNGGGKQALET 257

Query: 225 WDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMED 284
             +    + Q       +   Q  A    +       ++     +    +A  L    + 
Sbjct: 258 VQRLLPVLCQAH----GLTPQQVVA--IASNSGGKQALETVQRLLPVLCQAHGLTP--QQ 309

Query: 285 EDALAS--QIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNAS 342
             A+AS     Q +ETV++ + V+ +             +    K   Q  + + +    
Sbjct: 310 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGK---QALETVQRLLPV 366

Query: 343 LDRLIE-KSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIK 401
           L +        + A   +                           G   Q L    + + 
Sbjct: 367 LCQAHGLTPEQVVAIASN---------------------------GGGKQALETVQRLLP 399

Query: 402 WYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRI 449
              ++  +       E Q +A  +      +       L    + + +
Sbjct: 400 VLCQAHGL-----TPE-QVVAIASHDGGKQALETVQRLLPVLCQAHGL 441

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 67.9 bits (166), Expect = 1e-11
 Identities = 37/293 (12%), Positives = 70/293 (23%), Gaps = 55/293 (18%)

Query: 10  EAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLP 69
                   A     +Q  A  A+      +        L         +    P++    
Sbjct: 260 RLLPVLCQAHGLTPQQVVA-IAS-NSGGKQALETVQRLLP----VLCQAHGLTPQQV--V 311

Query: 70  TCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDD 129
              S G     LE  +  L     +   L         Q  A          +       
Sbjct: 312 AIASNGGGKQALETVQRLLPVL-CQAHGLTPQ------QVVAIASHDGGKQAL------- 357

Query: 130 HYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFL 189
                  +   +    L Q     P         E + A  + G  +  L+ ++     L
Sbjct: 358 -------ETVQRLLPVLCQAHGLTP---------EQVVAIASNGGGKQALETVQRLLPVL 401

Query: 190 IRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEA 249
            +   +  E+ V+           +       L    +    + Q       +   Q  A
Sbjct: 402 CQAHGLTPEQVVA---------IASHDGGKQALETVQRLLPVLCQAH----GLTPQQVVA 448

Query: 250 KGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQID-QNIETVKK 301
               + G     ++     +     AL    + +   ALA       ++ VKK
Sbjct: 449 --IASNGGGRPALESIVAQLSRPDPALAALTN-DHLVALACLGGRPALDAVKK 498

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 48.2 bits (115), Expect = 2e-05
 Identities = 31/295 (10%), Positives = 76/295 (25%), Gaps = 42/295 (14%)

Query: 164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELR 223
           E+   H+     +     L  A +     L++         D G+       G V     
Sbjct: 2   EHHHHHHQWSGARALEALLTVAGELRGPPLQL---------DTGQLLKIAKRGGVTAVEA 52

Query: 224 MWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSME 283
           +         ++ +    +     +     +       ++     +    +A  L    +
Sbjct: 53  VHA------WRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP--Q 104

Query: 284 DEDALASQID--QNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNA 341
              A+AS     Q +ETV++ + V+ +             +    K   Q  + +     
Sbjct: 105 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGK---QALETVQALLP 161

Query: 342 SLDRLIE-KSSMIFAW--LKHCEYAKRKKRIASELCDKG-----KLSDSFLVIGESYQKL 393
            L +        + A       + A    +    +  +      +   +    G   Q L
Sbjct: 162 VLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQAL 221

Query: 394 RKFNKAIKWYTKSWEMYKSIGNLE---GQALAKVNMGNVLDSNGDWAGALDAFQE 445
               + +    ++               Q +A  + G    +       L    +
Sbjct: 222 ETVQRLLPVLCQA---------HGLTPQQVVAIASNGGGKQALETVQRLLPVLCQ 267

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 73.2 bits (180), Expect = 1e-13
 Identities = 35/282 (12%), Positives = 75/282 (26%), Gaps = 51/282 (18%)

Query: 6   MQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGE---YVEALKWFRIDYDVSVKYL 62
           M+   AK A  S  E  ++ +   W  +      +  +       +      Y    +  
Sbjct: 3   MEFERAKAAVESDTEFWDKMQAE-WEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61

Query: 63  PEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEM 122
            +    P     G   L+        I  ++  +      ++      A   LG T  E 
Sbjct: 62  FKDW--PGAFEEGLKRLKEGDLPVT-ILFMEAAILQDPGDAE------AWQFLGITQAE- 111

Query: 123 FLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNL 182
              ++        A    +  ++L       P           + A   + +      + 
Sbjct: 112 -NENEQA------AIVALQRCLEL------QP---------NNLKALMALAVSYTNTSHQ 149

Query: 183 EEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK-- 240
           ++A + L   ++          +     L  N        R   KS         + +  
Sbjct: 150 QDACEALKNWIKQ---------NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELY 200

Query: 241 ----KIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNL 278
                      +      LG L +   +++ AI  +  AL +
Sbjct: 201 LEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV 242

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 63.5 bits (155), Expect = 2e-10
 Identities = 48/338 (14%), Positives = 111/338 (32%), Gaps = 55/338 (16%)

Query: 2   GRDEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKY 61
            ++++ +S +++ Y    E   +          G      G+    +       + ++  
Sbjct: 41  AQNQVTVSASEKGYYFHTENPFKDWPG-AFE-EGLKRLKEGDLPVTIL----FMEAAILQ 94

Query: 62  LPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASD--------LVEQQR--- 110
            P        Q LG      E+ + A I  +++ LEL  +                    
Sbjct: 95  DPGDA--EAWQFLGITQAENENEQAA-IVALQRCLELQPNNLKALMALAVSYTNTSHQQD 151

Query: 111 ACTQLGRTYYEMFLRSDDDHYSI-RNAKKYFKSAMKLAQTLKENPATSR--SSFLK---- 163
           AC        + +++ +  +  + +N K       +++++  ++         +L+    
Sbjct: 152 ACE-----ALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ 206

Query: 164 --EYIDA--HNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVY 219
             + ID      +G+L         A       L +        +D     L + LG   
Sbjct: 207 NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV------RPED---YSLWNRLGATL 257

Query: 220 MELRMWDKSREHIEQDIIICKK-IEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNL 278
                 +++       +    + +E   G  +   NLG     +  Y EA+  +  AL+L
Sbjct: 258 ANGDRSEEA-------VEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310

Query: 279 -AQSMEDEDALASQIDQNIE-TVKKAIEVMDELKKEEQ 314
             +S   +      I  NI   ++ A+ +MD+ +  + 
Sbjct: 311 QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQA 348

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 62.4 bits (152), Expect = 4e-10
 Identities = 42/325 (12%), Positives = 89/325 (27%), Gaps = 73/325 (22%)

Query: 135 NAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLE 194
            AK   +S  +    ++            E+ +      + + +    +       +G  
Sbjct: 7   RAKAAVESDTEFWDKMQA-----------EWEEMARRNWISENQEAQNQVTVSASEKGYY 55

Query: 195 ICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYIN 254
              E    +            G   ++      +   +E    I +        A+ +  
Sbjct: 56  FHTENPFKDWPG-----AFEEGLKRLKEGDLPVTILFMEA--AILQDPGD----AEAWQF 104

Query: 255 LGELHYRVQKYDEAILCYQKAL-----------NLAQSMEDEDALASQIDQNIETVKKAI 303
           LG      +    AI+  Q+ L            LA S  +     S      E +K  I
Sbjct: 105 LGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNT----SHQQDACEALKNWI 160

Query: 304 EVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYA 363
           +            K L +N   + G ++        ++ L+ + E             Y 
Sbjct: 161 KQ-------NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKE------------LYL 201

Query: 364 KRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQ---A 420
           +     A+         D    +G  +    +FN+AI  +  +         L  +    
Sbjct: 202 E-----AAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAA---------LTVRPEDY 247

Query: 421 LAKVNMGNVLDSNGDWAGALDAFQE 445
                +G  L +      A++A+  
Sbjct: 248 SLWNRLGATLANGDRSEEAVEAYTR 272

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 70.5 bits (173), Expect = 1e-13
 Identities = 33/243 (13%), Positives = 69/243 (28%), Gaps = 55/243 (22%)

Query: 73  SLGEVYLRLEHFKDALIYQVKKHLELAKDASDL----------VEQQRACTQLGRTYYEM 122
                 +       A +   ++ + L  D +++              +  T+L   Y + 
Sbjct: 9   QKVSAAIEAGQNGQA-VSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKN 67

Query: 123 FLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNL 182
                  +Y    A  ++K        L++ P           +D       +Q+     
Sbjct: 68  ------RNY--DKAYLFYKEL------LQKAP---------NNVDCLEACAEMQVCRGQE 104

Query: 183 EEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYME-LRMWDKSREHIEQDIIICKK 241
           ++A +   + L++         +      +  LGN Y        K  E         KK
Sbjct: 105 KDALRMYEKILQL---------EADNLAANIFLGNYYYLTAEQEKKKLETDY------KK 149

Query: 242 IEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKK 301
           +             G       +Y++A    QK +    S E +  L       I  ++K
Sbjct: 150 LSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLD-----KILRIEK 204

Query: 302 AIE 304
            + 
Sbjct: 205 EVN 207

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 65.2 bits (159), Expect = 7e-12
 Identities = 23/151 (15%), Positives = 50/151 (33%), Gaps = 18/151 (11%)

Query: 164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEI-------CNEEEVSEDDDGRSRLHHNLG 216
           + +D         +E     +A  +  + + +            V ++ +  S+L   L 
Sbjct: 2   QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELA 61

Query: 217 NVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKAL 276
             Y + R +DK+    ++ +                    E+     +  +A+  Y+K L
Sbjct: 62  LAYKKNRNYDKAYLFYKELLQKAPN------NVDCLEACAEMQVCRGQEKDALRMYEKIL 115

Query: 277 NLAQSMEDEDA---LASQIDQNIETVKKAIE 304
            L    ++  A   L +      E  KK +E
Sbjct: 116 QLEA--DNLAANIFLGNYYYLTAEQEKKKLE 144

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 60.1 bits (146), Expect = 3e-10
 Identities = 29/214 (13%), Positives = 59/214 (27%), Gaps = 45/214 (21%)

Query: 14  AYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQS 73
            Y     + N +  ++ A  +    K    Y +A       Y   ++  P    +   ++
Sbjct: 40  MYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL----FYKELLQKAPNN--VDCLEA 93

Query: 74  LGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSI 133
             E+ +     KDAL    +K L+L  D         A   LG  YY    +        
Sbjct: 94  CAEMQVCRGQEKDALRM-YEKILQLEADNLA------ANIFLGNYYYLTAEQEKK----- 141

Query: 134 RNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGL 193
               +     +                   +   A    G+ ++     E+A+  L + +
Sbjct: 142 --KLETDYKKLSS------PT---------KMQYARYRDGLSKLFTTRYEKARNSLQKVI 184

Query: 194 EICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDK 227
                 E              L  +    +  ++
Sbjct: 185 LRFPSTE----------AQKTLDKILRIEKEVNR 208

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 72.2 bits (178), Expect = 1e-13
 Identities = 42/269 (15%), Positives = 88/269 (32%), Gaps = 52/269 (19%)

Query: 28  ARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHL--LPTCQSLGEVYLRLEHFK 85
           A   N++  + +++ +Y +A         +  K L + H     T  +L  +Y +   +K
Sbjct: 69  ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK 128

Query: 86  DALIYQVK-----------KHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIR 134
           +A     +            H ++AK  ++L      C   G+ Y E             
Sbjct: 129 EAEPLCKRALEIREKVLGKDHPDVAKQLNNLAL---LCQNQGK-YEE------------- 171

Query: 135 NAKKYFKSAMKLAQTL--KENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRG 192
             + Y++ A+++ QT    ++P  +++          NN+    ++    ++A+      
Sbjct: 172 -VEYYYQRALEIYQTKLGPDDPNVAKT---------KNNLASCYLKQGKFKQAETLYKEI 221

Query: 193 LEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGE---- 248
           L   +E E    DD    +  +                  E                   
Sbjct: 222 LTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW-----YKACKVDSPT 276

Query: 249 -AKGYINLGELHYRVQKYDEAILCYQKAL 276
                 NLG L+ R  K++ A    + A+
Sbjct: 277 VTTTLKNLGALYRRQGKFEAAETLEEAAM 305

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 71.0 bits (175), Expect = 3e-13
 Identities = 39/272 (14%), Positives = 87/272 (31%), Gaps = 56/272 (20%)

Query: 28  ARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHL--LPTCQSLGEVYLRLEHFK 85
            R  + +     ++G Y  A+   +   +   K     H         L  VY     +K
Sbjct: 27  LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK 86

Query: 86  DALIYQVK-----------KHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIR 134
           DA                  H  +A   ++          L   Y +        +   +
Sbjct: 87  DAANLLNDALAIREKTLGKDHPAVAATLNN----------LAVLYGKR-----GKY---K 128

Query: 135 NAKKYFKSAMKLAQTL--KENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRG 192
            A+   K A+++ + +  K++P  ++           NN+ +L       EE + +  R 
Sbjct: 129 EAEPLCKRALEIREKVLGKDHPDVAKQ---------LNNLALLCQNQGKYEEVEYYYQRA 179

Query: 193 LEICNEEEVSEDDD---GRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGE- 248
           LEI   +     DD    +++  +NL + Y++   + ++    ++ +    + E   G  
Sbjct: 180 LEIY--QTKLGPDDPNVAKTK--NNLASCYLKQGKFKQAETLYKEILTRAHEREF--GSV 233

Query: 249 ----AKGYINLGELHYRVQKYDEAILCYQKAL 276
                  +++  E      K  +     +   
Sbjct: 234 DDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 44.5 bits (106), Expect = 2e-04
 Identities = 28/230 (12%), Positives = 61/230 (26%), Gaps = 46/230 (20%)

Query: 28  ARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKH--LLPTCQSLGEVYLRLEHFK 85
           A   N +  +   RG+Y EA    +   ++  K L + H  +     +L  +      ++
Sbjct: 111 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYE 170

Query: 86  DALIYQVK-----------KHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIR 134
           +   Y  +               +AK              L   Y +            +
Sbjct: 171 EVEYYYQRALEIYQTKLGPDDPNVAK----------TKNNLASCYLKQ-----GKF---K 212

Query: 135 NAKKYFKSAMKLAQ--TL-KENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIR 191
            A+  +K  +  A        +                 +    +      ++   F   
Sbjct: 213 QAETLYKEILTRAHEREFGSVDDENKPIW---------MHAEEREECKGKQKDGTSFGEY 263

Query: 192 GLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKK 241
           G      +    D    +    NLG +Y     ++ +    E  +   K+
Sbjct: 264 GGW---YKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 74.9 bits (183), Expect = 2e-13
 Identities = 99/627 (15%), Positives = 184/627 (29%), Gaps = 169/627 (26%)

Query: 467 HYSHMIRFDNIEEARRLQHEIDKLKESKSEDLEAYDVARDCCSETDTEGNDHLPDVRSSA 526
           H+ H + F+  E   + +  +   +++  ++ +  DV             D    + S  
Sbjct: 2   HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ------------DMPKSILSK- 48

Query: 527 CFPAEM-----SKSDSGRSKTLAGLEEVEDDEPLISFLRSSERL--PKLKRAYVEKQNIP 579
               E+     SK     +  L      + +E +  F+    R+    L      +Q  P
Sbjct: 49  ---EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105

Query: 580 TEPRELTPKTLSKSTNSQQ--TGGGRKRIRVVLSDDEGDIDNEEGLKGRLQKCP---VEG 634
           +    +  +   +  N  Q        R++  L      +   + L   L+      ++G
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK-----L--RQALL-ELRPAKNVLIDG 157

Query: 635 VATFDAINSKS---GSASPAHKFQDVPA-----ADFKCTNSSENPINVEESTC------- 679
           V        K+        ++K Q          + K  NS E  + + +          
Sbjct: 158 VLGS----GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 680 ----SHKFTSSNPTNQYGNAIR--CTGKVF-----IASDVND-------D-QC---VTFR 717
                H        +     +R     K +     +  +V +       +  C   +T R
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273

Query: 718 ---IDDDLIHLEVHSCICDDKLDI----ESLKVELACLY--YLQLPKE--KISKGLLPII 766
              + D L          D         E   + L  L      LP+E    +   L II
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333

Query: 767 QHMKYGGRSLESF----DAFK----DQLGKDIIEVSIDGWVQKRLMKLYIECCKELSEAP 818
                   S+       D +K    D+L   IIE S++        K++      LS  P
Sbjct: 334 ------AESIRDGLATWDNWKHVNCDKL-TTIIESSLNVLEPAEYRKMF----DRLSVFP 382

Query: 819 N-----MKLLKKLYISEVEDEVIVSECELQDISVTPLLN--------ALHTHKTVALLDL 865
                   LL  ++   ++ +V+V   +L   S   L+         ++ +      L+L
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS---LVEKQPKESTISIPSI----YLEL 435

Query: 866 SHNLLGNGTMEK--LQQFFISSCQNYVDLTLDL-----------HCNRFGPTTLFQICEC 912
              L     + +  +  + I    +  DL               H               
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT---- 491

Query: 913 PVLFTRLGVLNLS--GNRL------TDACGSYLSTI--LKNCKVLYSLNI-ENCSITSRT 961
             LF  +  L+      ++       +A GS L+T+  LK     Y   I +N     R 
Sbjct: 492 --LFRMV-FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF----YKPYICDNDPKYERL 544

Query: 962 IQKVADAL-GAESTLAQLCIGYNSPVT 987
           +  + D L   E  L        S  T
Sbjct: 545 VNAILDFLPKIEENL------ICSKYT 565

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 74.1 bits (181), Expect = 2e-13
 Identities = 93/674 (13%), Positives = 199/674 (29%), Gaps = 204/674 (30%)

Query: 53  IDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALI--YQVKKHLELAK------DASD 104
           +D++        K +L               F+DA +  +  K   ++ K      +   
Sbjct: 7   MDFETGEHQYQYKDILS-------------VFEDAFVDNFDCKDVQDMPKSILSKEEIDH 53

Query: 105 LVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMK-----LAQTLKENPATSRS 159
           ++  + A +      +   L   ++       +K+ +  ++     L   +K       S
Sbjct: 54  IIMSKDAVSGT-LRLFWTLLSKQEEMV-----QKFVEEVLRINYKFLMSPIKTEQ-RQPS 106

Query: 160 SFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVY 219
              + YI+  +      +  DN   AK              VS     R + +  L    
Sbjct: 107 MMTRMYIEQRDR-----LYNDNQVFAKYN------------VS-----RLQPYLKLRQAL 144

Query: 220 MELRMWDKSREHIEQDIII-----CKK----IEHCQGEAKG--------YINLGELHYRV 262
           +ELR          ++++I       K    ++ C              ++NL       
Sbjct: 145 LELRP--------AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK----NC 192

Query: 263 QKYDEAI-----LCYQKALNLAQSMEDEDALASQIDQNIETVKKAIE------------- 304
              +  +     L YQ   N     +     +S I   I +++  +              
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSD----HSSNIKLRIHSIQAELRRLLKSKPYENCLL 248

Query: 305 VMDELKKEEQ----NL--KKL--TRNMIIAKGTSQERKYLLQQNASLDRLIEKSSM-IFA 355
           V+  ++  +     NL  K L  TR   +    S      +  +     L       +  
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308

Query: 356 -WLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIG 414
            +L       R + +  E+        S  +I ES   +R           +W+ +K + 
Sbjct: 309 KYLDC-----RPQDLPREVLTTNPRRLS--IIAES---IRDG-------LATWDNWKHVN 351

Query: 415 NLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYR-IAV---EANLPSVQLSAL------- 463
             +   + + ++ NVL+           +++ +  ++V    A++P++ LS +       
Sbjct: 352 CDKLTTIIESSL-NVLEP--------AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402

Query: 464 ------ENMHYSHMIRFDNIEEARRLQHEIDKLKESKSED--------LEAYDVARD-CC 508
                   +H   ++     E    +   I    + K E+        ++ Y++ +    
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISI-PSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461

Query: 509 SETDTEGND---------HLPDVRSSACFPAEMSKSDSGRSKTLAGLEEVE-----DDEP 554
            +      D         HL           E  +  +           +E     D   
Sbjct: 462 DDLIPPYLDQYFYSHIGHHL--------KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513

Query: 555 LISFLRSSERLPKLK--RAYVEKQNIPTEPRELT------PKTLSKSTNSQQTGGGRKRI 606
             +       L +LK  + Y+   N P   R +       PK       S+ T      +
Sbjct: 514 WNASGSILNTLQQLKFYKPYICD-NDPKYERLVNAILDFLPKIEENLICSKYT----DLL 568

Query: 607 RVVLSDDEGDIDNE 620
           R+ L  ++  I  E
Sbjct: 569 RIALMAEDEAIFEE 582

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.3 bits (166), Expect = 1e-11
 Identities = 92/695 (13%), Positives = 192/695 (27%), Gaps = 214/695 (30%)

Query: 254 NLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEE 313
             GE  Y   +Y + +  ++ A      +++ D       ++++ + K+I     L KEE
Sbjct: 10  ETGEHQY---QYKDILSVFEDAF-----VDNFDC------KDVQDMPKSI-----LSKEE 50

Query: 314 QNLKKLTRNMIIAKGTSQERKYLL------QQNASLDRLIEKSSMI-FAWL--------- 357
             +       II    +      L      +Q   + + +E+   I + +L         
Sbjct: 51  --IDH-----IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103

Query: 358 ----KHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRK--FN-KAIKWYT------ 404
                   Y +++ R+ +   D    +   +   + Y KLR+     +  K         
Sbjct: 104 QPSMMTRMYIEQRDRLYN---DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160

Query: 405 --KSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSV---Q 459
             K+W        +         +   +D    W    +       + +   L       
Sbjct: 161 SGKTW--------VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 460 LSALENMHYSHMIRFDNIEEA-RRLQHEIDKLKES--------KSEDLEAYDVA------ 504
            ++  +   +  +R  +I+   RRL       +           ++   A++++      
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKS-KPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271

Query: 505 -RDCCSETDTEGNDHLPDVRSSACFPAEMSKSDSGRSKTLAGLEEVEDDEPLISFLRSSE 563
            R     TD         +                       L   E    L+ +L    
Sbjct: 272 TRF-KQVTDFLSAATTTHISL---------------DHHSMTLTPDEVKSLLLKYLD--- 312

Query: 564 RLPKLKRAYVEKQNIPTEPRELTPKTLSKSTNSQQTGGGRKRIRVVLSDDEGDIDN---- 619
                       Q++P E     P+ LS              I   + D     DN    
Sbjct: 313 ---------CRPQDLPREVLTTNPRRLSI-------------IAESIRDGLATWDNWKHV 350

Query: 620 -EEGLKGRLQKC-----PVEGVATFD--AINSKSGSASPAHKFQD---VPAADFKC--TN 666
             + L   ++       P E    FD  ++            F     +P         +
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSV------------FPPSAHIPTILLSLIWFD 398

Query: 667 SSENPINVEESTCSHKFTSSNPTNQYGNAIRCTGKVFIASDVNDDQCVTFRIDDDLIHLE 726
             ++  +V                             +     +    T  I    I+LE
Sbjct: 399 VIKS--DVMVVVNK-----------------LHKYSLVEKQPKES---TISIPS--IYLE 434

Query: 727 VHSCICDDKLDIESLKVELACLYYLQLPKEKISKGLLP----------IIQHMKYGGRSL 776
           +     +++  +    V+    +Y  +PK   S  L+P          I  H+K      
Sbjct: 435 LK-VKLENEYALHRSIVD----HY-NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP- 487

Query: 777 ESFDAFKDQLGKDIIEVSID-GWVQKRLMKLYIECCKELSEAPNMKLLKKLYISEVEDEV 835
           E    F+         V +D  ++++++           S    ++ LK  Y        
Sbjct: 488 ERMTLFR--------MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF-Y-----KPY 533

Query: 836 IVSECELQDISVTPLLNALHTHKTVALLDLSHNLL 870
           I       +  V  +L+ L   +   +     +LL
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 3e-07
 Identities = 88/610 (14%), Positives = 183/610 (30%), Gaps = 190/610 (31%)

Query: 4   DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWF-----RIDYDVS 58
           D  +   +K          +          +   L ++ E  E ++ F     RI+Y   
Sbjct: 40  DMPKSILSKEEIDHIIMSKDAVSGTL---RLFWTLLSKQE--EMVQKFVEEVLRINYKFL 94

Query: 59  VKYLPEKHLLPTCQSLGEVYLRLEHFKDA------------LIYQVKKHLE--------- 97
           +  +  +   P+  +   +  R   + D                ++++ L          
Sbjct: 95  MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154

Query: 98  -----------LAKDA--------------------------SDLVEQQRACTQLGRTYY 120
                      +A D                           + L   Q+   Q+   + 
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 121 EMFLRSDDDHYSIRNAKKYFKSAMKLA-------------------------QTLKENPA 155
                S +    I + +   +  +K                           + L     
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL----L 270

Query: 156 TSRSSFLKEYIDAHNNIGMLQMELDNL------EEAKKFLIRGLEICNEEEVSEDDDGRS 209
           T+R    K+  D  +      + LD+       +E K  L++ L+ C  +++  +    +
Sbjct: 271 TTRF---KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD-CRPQDLPREVLTTN 326

Query: 210 RLHHNLGNVYMELR----MWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKY 265
               ++  +   +R     WD  + H+  D +    IE           L    YR + +
Sbjct: 327 PRRLSI--IAESIRDGLATWDNWK-HVNCDKLT-TIIESS------LNVLEPAEYR-KMF 375

Query: 266 DE---------------AILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMD--- 307
           D                +++ +    +    + ++    S +++  +  +  I +     
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK--ESTISIPSIYL 433

Query: 308 ELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLI-EKSSMIFAW-----LKHCE 361
           ELK + +N   L R+++          Y + +    D LI       F       LK+ E
Sbjct: 434 ELKVKLENEYALHRSIV--------DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485

Query: 362 YAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQAL 421
           + +R       L     L   FL      QK+R  + A       W    SI N   Q  
Sbjct: 486 HPER-----MTLFRMVFLDFRFL-----EQKIRHDSTA-------WNASGSILNTLQQ-- 526

Query: 422 AKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPS------VQLSALENMHYSHMIRFD 475
            K     + D++  +   ++A  + +   +E NL        +++ AL  M     I   
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILD-FLPKIEENLICSKYTDLLRI-AL--MAEDEAI--- 579

Query: 476 NIEEA-RRLQ 484
             EEA +++Q
Sbjct: 580 -FEEAHKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 8e-06
 Identities = 45/314 (14%), Positives = 101/314 (32%), Gaps = 99/314 (31%)

Query: 48  LKWFRIDYDVSVKYLPE--KHLLPTCQSL-GEVY----LRLEHFKDALIYQVKKHLELAK 100
           LK+     D   + LP       P   S+  E         +++K     ++   +E + 
Sbjct: 308 LKYL----DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363

Query: 101 DASDLVEQQRACTQLGRTYYEMF----------------LRSDDDHYSIRN-AKKYFKSA 143
           +  +  E ++         ++                  +  D     +     K  K +
Sbjct: 364 NVLEPAEYRK--------MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415

Query: 144 MKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEI----CNEE 199
           +     +++ P  S  S    Y++       L+++L+N     + ++    I     +++
Sbjct: 416 L-----VEKQPKESTISIPSIYLE-------LKVKLENEYALHRSIVDHYNIPKTFDSDD 463

Query: 200 EVSEDDDGRSRLH--HNLGN------------VYMELRMWDKSREHIEQDIIICKKIEHC 245
            +    D     H  H+L N            V+++ R +      +EQ I       + 
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR-F------LEQKIRHDSTAWNA 516

Query: 246 QGEA----------KGYINLGELHYR---------VQKYDEAILCYQKALNLAQS--MED 284
            G            K YI   +  Y          + K +E ++C  K  +L +   M +
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS-KYTDLLRIALMAE 575

Query: 285 EDAL----ASQIDQ 294
           ++A+      Q+ +
Sbjct: 576 DEAIFEEAHKQVQR 589

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 70.4 bits (173), Expect = 3e-13
 Identities = 37/326 (11%), Positives = 75/326 (23%), Gaps = 73/326 (22%)

Query: 126 SDDDHYSI----RNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDN 181
           +DD  +           Y ++     +   +                +N   +   EL  
Sbjct: 2   NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKY---------NSPYIYNRRAVCYYELAK 52

Query: 182 LEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKK 241
            + A+K +       N  +    D          G + M+      + +  +  +     
Sbjct: 53  YDLAQKDIETYFSKVNATKAKSAD------FEYYGKILMKKGQDSLAIQQYQAAVDRDTT 106

Query: 242 IEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALAS---------QI 292
                     Y  +G   Y    +  AI   +K +       D               + 
Sbjct: 107 ------RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT--TDPKVFYELGQAYYYNKEY 158

Query: 293 DQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSM 352
            +   +  K +    ELK    N+         A                 ++LIE  + 
Sbjct: 159 VKADSSFVKVL----ELKP---NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA- 210

Query: 353 IFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEM--- 409
                                  K +L ++   I   Y   R   KA   +     +   
Sbjct: 211 -----------------PGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPT 253

Query: 410 YKSIGNLEGQALAKVNMGNVLDSNGD 435
                       A   +   L+ +  
Sbjct: 254 N---------KKAIDGLKMKLEHHHH 270

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 32/249 (12%), Positives = 68/249 (27%), Gaps = 55/249 (22%)

Query: 35  GDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDAL--IYQV 92
            D L     Y EA++     ++           +         Y  L  +  A   I   
Sbjct: 10  ADFLFKNNNYAEAIE----VFNKLEAKKYNSPYI--YNRRAVCYYELAKYDLAQKDIETY 63

Query: 93  KKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKE 152
              +   K  S            G+   +      D       A + +++A+        
Sbjct: 64  FSKVNATKAKSA------DFEYYGKILMKK---GQDS-----LAIQQYQAAVDR------ 103

Query: 153 NPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLH 212
           +            +D +  IG       N   A +++ + +            D   ++ 
Sbjct: 104 DT---------TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-------TTTD--PKVF 145

Query: 213 HNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHY---RVQKYDEAI 269
           + LG  Y   + + K+     + + +   I        GY+     +       K   A 
Sbjct: 146 YELGQAYYYNKEYVKADSSFVKVLELKPNI------YIGYLWRARANAAQDPDTKQGLAK 199

Query: 270 LCYQKALNL 278
             Y+K + +
Sbjct: 200 PYYEKLIEV 208

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 68.5 bits (168), Expect = 2e-12
 Identities = 29/253 (11%), Positives = 77/253 (30%), Gaps = 54/253 (21%)

Query: 74  LGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSI 133
             +   +  ++ +A+     K      ++           +    YYE+         + 
Sbjct: 9   YADFLFKNNNYAEAIEV-FNKLEAKKYNSPY------IYNRRAVCYYEL----AKYDLAQ 57

Query: 134 RNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGL 193
           ++ + YF         +                      G + M+      A +     +
Sbjct: 58  KDIETYFS-------KVNATK---------AKSADFEYYGKILMKKGQDSLAIQQYQAAV 101

Query: 194 EICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYI 253
           +          D  R  ++  +G+ +     +  + +++E+ I           + K + 
Sbjct: 102 DR---------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT------DPKVFY 146

Query: 254 NLGELHYRVQKYDEAILCYQKAL-----------NLAQSMEDEDALASQIDQNIETVKKA 302
            LG+ +Y  ++Y +A   + K L             A++   +D   ++        +K 
Sbjct: 147 ELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPD-TKQGLAKPYYEKL 205

Query: 303 IEVMDELKKEEQN 315
           IEV      + ++
Sbjct: 206 IEVCAPGGAKYKD 218

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 28/274 (10%), Positives = 65/274 (23%), Gaps = 49/274 (17%)

Query: 10  EAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLP 69
           EA   +   + +        + N          +Y  A K     Y   V     K    
Sbjct: 21  EAIEVFNKLEAKKYNSPYI-Y-NRRAVCYYELAKYDLAQKDIE-TYFSKVNATKAKSA-- 75

Query: 70  TCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDD 129
             +  G++ ++      A I Q +  ++      D         Q+G  +Y      +  
Sbjct: 76  DFEYYGKILMKKGQDSLA-IQQYQAAVDRDTTRLD------MYGQIGSYFYNK---GNFP 125

Query: 130 HYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFL 189
                 A +Y +  ++                          +G          +A    
Sbjct: 126 -----LAIQYMEKQIRP------TT---------TDPKVFYELGQAYYYNKEYVKADSSF 165

Query: 190 IRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQ-----DIIICKKIEH 244
           ++ LE+           G    +              K            ++      ++
Sbjct: 166 VKVLEL-----KPNIYIG----YLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY 216

Query: 245 CQGEAKGYINLGELHYRVQKYDEAILCYQKALNL 278
                +    +   +   +   +A   ++  L L
Sbjct: 217 KDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 69.1 bits (170), Expect = 4e-13
 Identities = 39/255 (15%), Positives = 70/255 (27%), Gaps = 59/255 (23%)

Query: 34  IGDILKNRGEYVEALKWFR----IDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALI 89
           +G  L   G Y  AL  F      +        PE         L    L+L     AL 
Sbjct: 11  LGVQLYALGRYDAALTLFERALKENPQ-----DPEALY-----WLARTQLKLGLVNPALE 60

Query: 90  -YQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRN---AKKYFKSAMK 145
               K  +                  L   Y  ++ +++D          A    K A +
Sbjct: 61  NG--KTLVARTPRYLG------GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER 112

Query: 146 LAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDD 205
           +      NP          Y   H   G++   L   ++A+  L + L +        +D
Sbjct: 113 V------NP---------RYAPLHLQRGLVYALLGERDKAEASLKQALAL--------ED 149

Query: 206 DGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKK-IEHCQGEAKGYINLGELHYRVQK 264
                +   L  +Y+ +   D++       +    K +E    +    +          K
Sbjct: 150 T--PEIRSALAELYLSMGRLDEA-------LAQYAKALEQAPKDLDLRVRYASALLLKGK 200

Query: 265 YDEAILCYQKALNLA 279
            +EA        +  
Sbjct: 201 AEEAARAAALEHHHH 215

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 54.8 bits (133), Expect = 3e-08
 Identities = 15/129 (11%), Positives = 40/129 (31%), Gaps = 28/129 (21%)

Query: 162 LKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEIC-NEEEVSEDDDGRSRLHHNLGNVYM 220
           ++        +G+    L   + A     R L+    + E            + L    +
Sbjct: 1   MQTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEA----------LYWLARTQL 50

Query: 221 ELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQ-----------KYDEAI 269
           +L + + + E+ +  +       +      GY+ L E +  +              ++A+
Sbjct: 51  KLGLVNPALENGKTLVAR--TPRY----LGGYMVLSEAYVALYRQAEDRERGKGYLEQAL 104

Query: 270 LCYQKALNL 278
              + A  +
Sbjct: 105 SVLKDAERV 113

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 70.8 bits (174), Expect = 6e-13
 Identities = 37/273 (13%), Positives = 81/273 (29%), Gaps = 40/273 (14%)

Query: 7   QMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKH 66
            M +    Y           E       G  +       EA       ++   +  PE+ 
Sbjct: 2   HMLQNNTDYPFEANNPYMYHEN-PME-EGLSMLKLANLAEAAL----AFEAVCQAAPERE 55

Query: 67  LLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRS 126
                +SLG      E    A I  +     L                L  ++      +
Sbjct: 56  --EAWRSLGLTQAENEKDGLA-IIALNHARMLDPKDIA------VHAALAVSHTNEHNAN 106

Query: 127 DDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAK 186
                    A    ++ +      ++  + +  + +        +        +   E +
Sbjct: 107 A--------ALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECR 158

Query: 187 KFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKK-IEHC 245
             L   LE+      + +D   ++LH +LG +Y     +D +  +        ++ +E  
Sbjct: 159 TLLHAALEM------NPND---AQLHASLGVLYNLSNNYDSAAAN-------LRRAVELR 202

Query: 246 QGEAKGYINLGELHYRVQKYDEAILCYQKALNL 278
             +A+ +  LG       +  EA+  Y +AL++
Sbjct: 203 PDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 62.7 bits (153), Expect = 2e-10
 Identities = 38/294 (12%), Positives = 75/294 (25%), Gaps = 62/294 (21%)

Query: 1   MGRDEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEAL----KWFRIDYD 56
             +D      A  A   A+    +      A  +     N      AL     W      
Sbjct: 68  NEKDG----LAIIALNHARMLDPKDIAV-HAA-LAVSHTNEHNANAALASLRAWLLSQPQ 121

Query: 57  VSVKY-----LPEKHLLPTCQSLGEVYLRLEHFKDALI-YQVKKHLELAKDASDLVEQQR 110
                               QS    +     +++          LE+  + +       
Sbjct: 122 YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLL--HAALEMNPNDAQ------ 173

Query: 111 ACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHN 170
               LG  Y      + D       A    + A++L       P         +     N
Sbjct: 174 LHASLGVLYNL--SNNYDS------AAANLRRAVEL------RP---------DDAQLWN 210

Query: 171 NIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSRE 230
            +G      +  +EA     R L+I         + G  R+ +N+   Y  +  +D + +
Sbjct: 211 KLGATLANGNRPQEALDAYNRALDI---------NPGYVRVMYNMAVSYSNMSQYDLAAK 261

Query: 231 HIEQDIII------CKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNL 278
            + + I +             +     +     L   + + D   L Y + +  
Sbjct: 262 QLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 57.3 bits (139), Expect = 1e-08
 Identities = 27/252 (10%), Positives = 63/252 (25%), Gaps = 62/252 (24%)

Query: 212 HHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILC 271
               G   ++L    ++    E   +     E      + + +LG      +K   AI+ 
Sbjct: 24  PMEEGLSMLKLANLAEAALAFEA--VCQAAPER----EEAWRSLGLTQAENEKDGLAIIA 77

Query: 272 YQKAL-----------NLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLT 320
              A             LA S  +E       +  + +++  +    + ++      +  
Sbjct: 78  LNHARMLDPKDIAVHAALAVSHTNE----HNANAALASLRAWLLSQPQYEQLGSVNLQAD 133

Query: 321 RNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLS 380
            ++       Q   +                                  A E+      +
Sbjct: 134 VDI--DDLNVQSEDFFFAAPNEYRECRT------------LLHA-----ALEM--NPNDA 172

Query: 381 DSFLVIGESYQKLRKFNKAIKWYTK-------SWEMYKSIGNLEGQALAKVNMGNVLDSN 433
                +G  Y     ++ A     +         +++    N          +G  L + 
Sbjct: 173 QLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLW----N---------KLGATLANG 219

Query: 434 GDWAGALDAFQE 445
                ALDA+  
Sbjct: 220 NRPQEALDAYNR 231

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 45.7 bits (109), Expect = 6e-05
 Identities = 23/211 (10%), Positives = 55/211 (26%), Gaps = 48/211 (22%)

Query: 249 AKGYINLGELHYRVQKYDEAILCYQKALNL-------------AQSMEDEDALASQIDQN 295
            +  +  G    ++    EA L ++                   Q+  ++D LA      
Sbjct: 21  HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLA------ 74

Query: 296 IETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTS-QERKYLLQQNASLDRLIEKSSMIF 354
           I  +  A  +      + +++         A   S           ASL   +       
Sbjct: 75  IIALNHARML------DPKDIAVH-----AALAVSHTNEHNANAALASLRAWLLSQP--- 120

Query: 355 AWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIG 414
                 +Y +          D   L+         +    ++ +       + EM     
Sbjct: 121 ------QYEQLGSVNLQADVDIDDLNVQSE--DFFFAAPNEYRECRTLLHAALEMN---- 168

Query: 415 NLEGQALAKVNMGNVLDSNGDWAGALDAFQE 445
                A    ++G + + + ++  A    + 
Sbjct: 169 --PNDAQLHASLGVLYNLSNNYDSAAANLRR 197

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 68.6 bits (167), Expect = 2e-12
 Identities = 23/183 (12%), Positives = 62/183 (33%), Gaps = 7/183 (3%)

Query: 119 YYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQME 178
           + +           +     Y    ++L + L +         + + +   N I  +  E
Sbjct: 111 FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQ---QLTGIDVYQNLYIENAIANIYAE 167

Query: 179 LDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIII 238
              L++      + L+      + ++++   ++ +N          +++S   + + I I
Sbjct: 168 NGYLKKGIDLFEQILKQLEA--LHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225

Query: 239 CKKIEHCQGEAKGYINLGELHYRVQKYDEAIL-CYQKALNLAQSMEDEDALASQIDQNIE 297
             +I       + Y   GE   +++  +  I   Y+KA      +E   A    +   I 
Sbjct: 226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMH-AYKEALVNKIS 284

Query: 298 TVK 300
            ++
Sbjct: 285 RLE 287

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 49.4 bits (117), Expect = 3e-06
 Identities = 16/218 (7%), Positives = 68/218 (31%), Gaps = 7/218 (3%)

Query: 144 MKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSE 203
             +A  L+          +   I+         + L   +  K+   +      +EE   
Sbjct: 50  QGIAAKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHP 109

Query: 204 DDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQ 263
           +     +  + +    ++   ++     +++ +                  +  ++    
Sbjct: 110 EFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG 169

Query: 264 KYDEAILCYQKALNLAQSMEDEDALASQIDQNIETV-------KKAIEVMDELKKEEQNL 316
              + I  +++ L   +++ D +    ++  N           ++++  +++  +    +
Sbjct: 170 YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229

Query: 317 KKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIF 354
             +     +     +  + L  + A ++   +K+S  F
Sbjct: 230 NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 66.9 bits (164), Expect = 3e-12
 Identities = 27/237 (11%), Positives = 71/237 (29%), Gaps = 49/237 (20%)

Query: 74  LGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSI 133
           L   Y+R + ++ A    ++  L+             A       Y    L+ +D     
Sbjct: 14  LAMEYMRGQDYRQA-TASIEDALKSDPKNEL------AWLVRAEIYQY--LKVNDK---- 60

Query: 134 RNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIG-MLQMELDNLEEAKKFLIRG 192
             A++ F+ A+ +       P         +  + +NN G  L   L+   E+  +  + 
Sbjct: 61  --AQESFRQALSI------KP---------DSAEINNNYGWFLCGRLNRPAESMAYFDKA 103

Query: 193 LEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGY 252
           L                  + N G    +   +  +  +++      + +         +
Sbjct: 104 LAD-------PTYPTPYIANLNKGICSAKQGQFGLAEAYLK------RSLAAQPQFPPAF 150

Query: 253 INLGELHYRVQKYDEAILCYQKALNLAQSMEDED-----ALASQIDQNIETVKKAIE 304
             L        +  +A   ++K  +  + ++ +D      +A  +       +   +
Sbjct: 151 KELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQ 207

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 39/281 (13%), Positives = 70/281 (24%), Gaps = 66/281 (23%)

Query: 20  EEGNRQEEARWANVIGDILKNRGEYVEALKWFR----IDYDVSVKYLPEKHLLPTCQSLG 75
           E+ N+    +    +        +Y +A          D            L        
Sbjct: 2   EKANQVSNIK--TQLAMEYMRGQDYRQATASIEDALKSDPK-----NELAWL-----VRA 49

Query: 76  EVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRN 135
           E+Y  L+    A     ++ L +  D+++           G        R  +       
Sbjct: 50  EIYQYLKVNDKA-QESFRQALSIKPDSAE------INNNYGWFLCGRLNRPAE------- 95

Query: 136 AKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEI 195
           +  YF  A  LA      P             A+ N G+   +      A+ +L R L  
Sbjct: 96  SMAYFDKA--LADPTYPTPY-----------IANLNKGICSAKQGQFGLAEAYLKRSLAA 142

Query: 196 CNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINL 255
                              L    M       +  + +      K     +      + L
Sbjct: 143 ---------QPQFPPAFKELARTKMLAGQLGDADYYFK------KYQSRVEVLQADDLLL 187

Query: 256 GELHYRVQ-KYDEAILCYQKALNL----AQSMEDEDALASQ 291
           G   +++      A   Y+    L      S E +  L  Q
Sbjct: 188 G---WKIAKALGNAQAAYEYEAQLQANFPYSEELQTVLTGQ 225

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 58.8 bits (143), Expect = 1e-09
 Identities = 24/152 (15%), Positives = 46/152 (30%), Gaps = 25/152 (16%)

Query: 163 KEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMEL 222
            +  +    + M  M   +  +A   +   L+          D            +Y  L
Sbjct: 5   NQVSNIKTQLAMEYMRGQDYRQATASIEDALKS---------DPKNELAWLVRAEIYQYL 55

Query: 223 RMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGE-LHYRVQKYDEAILCYQKALNLAQS 281
           ++ DK++E   Q + I         E     N G  L  R+ +  E++  + KAL     
Sbjct: 56  KVNDKAQESFRQALSIKPD----SAEI--NNNYGWFLCGRLNRPAESMAYFDKALADPTY 109

Query: 282 MEDEDAL---------ASQIDQNIETVKKAIE 304
                A            Q       +K+++ 
Sbjct: 110 PTPYIANLNKGICSAKQGQFGLAEAYLKRSLA 141

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 53.4 bits (129), Expect = 9e-08
 Identities = 12/78 (15%), Positives = 33/78 (42%), Gaps = 6/78 (7%)

Query: 202 SEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYR 261
           +E  +  S +   L   YM  + + ++   IE        ++        ++   E++  
Sbjct: 1   AEKANQVSNIKTQLAMEYMRGQDYRQATASIE------DALKSDPKNELAWLVRAEIYQY 54

Query: 262 VQKYDEAILCYQKALNLA 279
           ++  D+A   +++AL++ 
Sbjct: 55  LKVNDKAQESFRQALSIK 72

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 41.5 bits (98), Expect = 9e-04
 Identities = 34/253 (13%), Positives = 69/253 (27%), Gaps = 60/253 (23%)

Query: 249 AKGYINLGELHYRVQKYDEAILCYQKAL-----------NLAQSMEDEDALASQIDQNIE 297
           +     L   + R Q Y +A    + AL             A+  +         D+  E
Sbjct: 8   SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLK----VNDKAQE 63

Query: 298 TVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWL 357
           + ++A+ +  +   E  N      N     G      +L  +   L+R  E         
Sbjct: 64  SFRQALSIKPDS-AEINN------NY----GW-----FLCGR---LNRPAE--------- 95

Query: 358 KHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLE 417
                +      A           + L  G    K  +F  A  +  +S    +      
Sbjct: 96  -----SMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA-AQP----- 144

Query: 418 GQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNI 477
               A   +       G    A   F++      ++ +  +Q   L  + +       N 
Sbjct: 145 QFPPAFKELARTKMLAGQLGDADYYFKK-----YQSRVEVLQADDL-LLGWKIAKALGNA 198

Query: 478 EEARRLQHEIDKL 490
           + A   + ++   
Sbjct: 199 QAAYEYEAQLQAN 211

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 67.2 bits (165), Expect = 5e-12
 Identities = 40/266 (15%), Positives = 87/266 (32%), Gaps = 46/266 (17%)

Query: 28  ARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHL--LPTCQSLGEVYLRLEHFK 85
           A   N++  + +++ +Y EA         +  K L + H     T  +L  +Y +   +K
Sbjct: 43  ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK 102

Query: 86  DALIYQVK-----------KHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIR 134
           +A     +            H ++AK  ++L      C   G+   E             
Sbjct: 103 EAEPLCKRALEIREKVLGKFHPDVAKQLNNLAL---LCQNQGK-AEE------------- 145

Query: 135 NAKKYFKSAMKLAQTL--KENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRG 192
             + Y++ A+++  T    ++P  +++          NN+    ++    ++A+      
Sbjct: 146 -VEYYYRRALEIYATRLGPDDPNVAKT---------KNNLASCYLKQGKYQDAETLYKEI 195

Query: 193 LEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKI--EHCQGEAK 250
           L   +E+E    +     +  +             S  + E      K    +       
Sbjct: 196 LTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWY-KACKVDS-PTVNT 253

Query: 251 GYINLGELHYRVQKYDEAILCYQKAL 276
              +LG L+ R  K + A      A 
Sbjct: 254 TLRSLGALYRRQGKLEAAHTLEDCAS 279

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 66.8 bits (164), Expect = 6e-12
 Identities = 35/261 (13%), Positives = 76/261 (29%), Gaps = 56/261 (21%)

Query: 39  KNRGEYVEALKWFRIDYDVSVKYLPEKHL--LPTCQSLGEVYLRLEHFKDALIYQVK--- 93
                   A+   +   +   K     H         L  VY     +K+A         
Sbjct: 12  SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALA 71

Query: 94  --------KHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMK 145
                    H  +A               L   Y +        +   + A+   K A++
Sbjct: 72  IREKTLGKDHPAVA----------ATLNNLAVLYGKR-----GKY---KEAEPLCKRALE 113

Query: 146 LAQTL--KENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSE 203
           + + +  K +P  ++           NN+ +L       EE + +  R LEI        
Sbjct: 114 IREKVLGKFHPDVAKQ---------LNNLALLCQNQGKAEEVEYYYRRALEIY--ATRLG 162

Query: 204 DDD---GRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGE-----AKGYINL 255
            DD    +++  +NL + Y++   +  +    ++ +    + E   G         +++ 
Sbjct: 163 PDDPNVAKTK--NNLASCYLKQGKYQDAETLYKEILTRAHEKEF--GSVNGDNKPIWMHA 218

Query: 256 GELHYRVQKYDEAILCYQKAL 276
            E      K  ++    +   
Sbjct: 219 EEREESKDKRRDSAPYGEYGS 239

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 61.0 bits (149), Expect = 5e-10
 Identities = 34/180 (18%), Positives = 62/180 (34%), Gaps = 42/180 (23%)

Query: 115 LGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTL--KENPATSRSSFLKEYIDAHNNI 172
           L   Y +       + Y  + A      A+ + +    K++PA + +          NN+
Sbjct: 49  LALVYRDQ------NKY--KEAAHLLNDALAIREKTLGKDHPAVAAT---------LNNL 91

Query: 173 GMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLH-------HNLGNVYMELRMW 225
            +L  +    +EA+    R LEI   E+V          H       +NL  +       
Sbjct: 92  AVLYGKRGKYKEAEPLCKRALEIR--EKVLGKF------HPDVAKQLNNLALLCQNQGKA 143

Query: 226 DKSREHIEQDIIICKKIEHCQGE-----AKGYINLGELHYRVQKYDEAILCYQKALNLAQ 280
           ++   +  + + I        G      AK   NL   + +  KY +A   Y++ L  A 
Sbjct: 144 EEVEYYYRRALEIYATR---LGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH 200

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 65.0 bits (159), Expect = 6e-12
 Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 6/123 (4%)

Query: 893  TLDL-HCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLN 951
             ++L +       TL    E     T +   ++ G R  D     L+ +LK    L SLN
Sbjct: 40   EVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLN 99

Query: 952  IENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGN----AITNLLVKLDTLKSFSEL 1007
            +E+  I+   I  + +AL + ++L +L I   S   GN     I N+L K  TL  F   
Sbjct: 100  VESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFG-Y 158

Query: 1008 NLN 1010
            +  
Sbjct: 159  HFT 161

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 61.2 bits (149), Expect = 9e-11
 Identities = 31/176 (17%), Positives = 53/176 (30%), Gaps = 39/176 (22%)

Query: 983  NSPVTGNAITNLLVKLDTLKSFSELNLNGLK-LSKPVVDRLCQ-LAKTSCLTHLMLGCTN 1040
            NS      +  +      L+   E+NLN +  +  P +    + L   + +    +  T 
Sbjct: 20   NSTDVEETLKRIQNNDPDLE---EVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR 76

Query: 1041 LGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMK 1100
                 +  L E L                       K   +      +  LN+  N I  
Sbjct: 77   SNDPVAFALAEML-----------------------KVNNT------LKSLNVESNFISG 107

Query: 1101 EGANALA-SLLMNPQCCLKVLVLS--KCQLGLAGVLQLIKALSENDTLEELNLADN 1153
             G  AL  +L  N    L  L +      LG    +++   L +N TL +      
Sbjct: 108  SGILALVEALQSNT--SLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 24/155 (15%), Positives = 54/155 (34%), Gaps = 10/155 (6%)

Query: 853  ALHTHKTVALLDLS-HNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICE 911
              +    +  ++L+    +       L+    +   N       +   R      F + E
Sbjct: 31   IQNNDPDLEEVNLNNIMNIPV---PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAE 87

Query: 912  CPVLF--TRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCS--ITSRTIQKVAD 967
              +L     L  LN+  N ++ +    L   L++   L  L I+N S  + +    ++A+
Sbjct: 88   --MLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN 145

Query: 968  ALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLK 1002
             L   +TL +    +         +N ++  + L 
Sbjct: 146  MLEKNTTLLKFGYHFTQQGPRLRASNAMMNNNDLV 180

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 18/141 (12%), Positives = 43/141 (30%), Gaps = 7/141 (4%)

Query: 840 CELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCN 899
             +   ++     AL T+  V    +      +     L +       N    +L++  N
Sbjct: 47  MNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML---KVNNTLKSLNVESN 103

Query: 900 RFGPTTLFQICECPVLFTRLGVLNLS--GNRLTDACGSYLSTILKNCKVLYSLNIENCSI 957
               + +  + E     T L  L +      L +     ++ +L+    L          
Sbjct: 104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163

Query: 958 TSRTIQKVADALGAESTLAQL 978
             R   + ++A+   + L + 
Sbjct: 164 GPR--LRASNAMMNNNDLVRK 182

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 32/182 (17%), Positives = 62/182 (34%), Gaps = 40/182 (21%)

Query: 937  LSTILKNCKVLYSLNIEN-CSITSRTIQKVADALGAESTLAQLCIGYN--SPVTGNAITN 993
            L  I  N   L  +N+ N  +I   T++  A+AL   + + +  I     +     A+  
Sbjct: 28   LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAE 87

Query: 994  LLVKLDTLKSFSELNLNGLKLSKPVVDRLCQ-LAKTSCLTHLMLG--CTNLGSDGSLQLV 1050
            +L   +TLKS   LN+    +S   +  L + L   + L  L +      LG++  +++ 
Sbjct: 88   MLKVNNTLKS---LNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA 144

Query: 1051 ESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLL 1110
              L                  +T              +L+                ++ +
Sbjct: 145  NMLEK---------------NTT--------------LLKFGYHFTQQ--GPRLRASNAM 173

Query: 1111 MN 1112
            MN
Sbjct: 174  MN 175

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 64.8 bits (159), Expect = 6e-12
 Identities = 23/205 (11%), Positives = 67/205 (32%), Gaps = 45/205 (21%)

Query: 74  LGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSI 133
            G  + +   +  A++  +++  +      D          LG  Y +     D      
Sbjct: 14  KGISHAKAGRYSQAVML-LEQVYDADAFDVD------VALHLGIAYVKTG-AVDR----- 60

Query: 134 RNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGL 193
               +  + ++         P         + +     +G+  +++   + A   LI+  
Sbjct: 61  --GTELLERSLAD------AP---------DNVKVATVLGLTYVQVQKYDLAVPLLIKVA 103

Query: 194 EICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYI 253
           E          +     +   LG     L  +D++ +  +  + +  +        K + 
Sbjct: 104 EA---------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNE----GKVHR 148

Query: 254 NLGELHYRVQKYDEAILCYQKALNL 278
            +   + ++ +++EA+  ++KA  L
Sbjct: 149 AIAFSYEQMGRHEEALPHFKKANEL 173

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 61.3 bits (150), Expect = 9e-11
 Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 17/112 (15%)

Query: 168 AHNNIGMLQMELDNLEEAKKFLIRGLEIC-NEEEVSEDDDGRSRLHHNLGNVYMELRMWD 226
            + + G+   +     +A   L +  +    + +V            +LG  Y++    D
Sbjct: 10  YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDV----------ALHLGIAYVKTGAVD 59

Query: 227 KSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNL 278
           +  E +E+ +      ++     K    LG  + +VQKYD A+    K    
Sbjct: 60  RGTELLERSLAD--APDN----VKVATVLGLTYVQVQKYDLAVPLLIKVAEA 105

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 47.1 bits (113), Expect = 7e-06
 Identities = 8/76 (10%), Positives = 30/76 (39%), Gaps = 8/76 (10%)

Query: 204 DDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKK-IEHCQGEAKGYINLGELHYRV 262
           +DD R   + + G  + +   + ++       +++ ++  +    +    ++LG  + + 
Sbjct: 3   NDDIRQVYYRDKGISHAKAGRYSQA-------VMLLEQVYDADAFDVDVALHLGIAYVKT 55

Query: 263 QKYDEAILCYQKALNL 278
              D      +++L  
Sbjct: 56  GAVDRGTELLERSLAD 71

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 63.6 bits (155), Expect = 7e-12
 Identities = 22/141 (15%), Positives = 51/141 (36%), Gaps = 15/141 (10%)

Query: 164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELR 223
           + ++    +G  Q +    ++A+K       +         D   +R    LG     L 
Sbjct: 16  DTLEQLYALGFNQYQAGKWDDAQKIFQALCML---------DHYDARYFLGLGACRQSLG 66

Query: 224 MWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSME 283
           +++++ +      ++         E +   +  E H ++   D A   +  A  LA +  
Sbjct: 67  LYEQALQSYSYGALMDIN------EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120

Query: 284 DEDALASQIDQNIETVKKAIE 304
             +ALA++    +E V    +
Sbjct: 121 AHEALAARAGAMLEAVTARKD 141

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 67.8 bits (166), Expect = 7e-12
 Identities = 44/310 (14%), Positives = 101/310 (32%), Gaps = 49/310 (15%)

Query: 7   QMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKH 66
            +  A   + +A ++  +  EA W   +G       + + A+          ++  P+  
Sbjct: 79  DLPNAVLLFEAAVQQDPKHMEA-WQY-LGTTQAENEQELLAIS----ALRRCLELKPD-- 130

Query: 67  LLPTCQSLGEVYLRLEHFKDALIYQVKKHLELA---KDASDLVEQQRACTQLGRTYYEMF 123
                 +L   +      + A    ++  L             E+      LG +   + 
Sbjct: 131 NQTALMALAVSFTNESLQRQACEI-LRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILG 189

Query: 124 LRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDA--HNNIGMLQMELDN 181
               D  +     K+ F +A++L      +P           ID      +G+L      
Sbjct: 190 SLLSDSLF--LEVKELFLAAVRL------DP---------TSIDPDVQCGLGVLFNLSGE 232

Query: 182 LEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKK 241
            ++A       L +        +D     L + LG         +++       +   ++
Sbjct: 233 YDKAVDCFTAALSV------RPND---YLLWNKLGATLANGNQSEEA-------VAAYRR 276

Query: 242 -IEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNI-ETV 299
            +E   G  +   NLG     +  + EA+  + +ALN+ +           + +NI  T+
Sbjct: 277 ALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTL 336

Query: 300 KKAIEVMDEL 309
           + A+ ++ + 
Sbjct: 337 RLALSMLGQS 346

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 65.1 bits (159), Expect = 5e-11
 Identities = 39/314 (12%), Positives = 85/314 (27%), Gaps = 58/314 (18%)

Query: 147 AQTLKENPATSRSSFLKEYIDAHNNIGMLQMEL-DNLEEAKKFLIRGLEICNEEEVSEDD 205
           A++  E+          E  +           L D  +       +G +   E  + +  
Sbjct: 6   AKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHP 65

Query: 206 DGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKY 265
                     G   ++      +    E    + +  +H     + +  LG      ++ 
Sbjct: 66  Q-----PFEEGLRRLQEGDLPNAVLLFEA--AVQQDPKH----MEAWQYLGTTQAENEQE 114

Query: 266 DEAILCYQKAL-----------NLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQ 314
             AI   ++ L            LA S  +E    S   Q  E ++  +           
Sbjct: 115 LLAISALRRCLELKPDNQTALMALAVSFTNE----SLQRQACEILRDWLRYTPAYAHLVT 170

Query: 315 NLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELC 374
             ++         G S+     L  ++    + E             +       A  L 
Sbjct: 171 PAEEGAGGA--GLGPSKRILGSLLSDSLFLEVKEL------------FLA-----AVRLD 211

Query: 375 DKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQ---ALAKVNMGNVLD 431
                 D    +G  +    +++KA+  +T +         L  +    L    +G  L 
Sbjct: 212 PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAA---------LSVRPNDYLLWNKLGATLA 262

Query: 432 SNGDWAGALDAFQE 445
           +      A+ A++ 
Sbjct: 263 NGNQSEEAVAAYRR 276

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 63.9 bits (156), Expect = 1e-10
 Identities = 40/280 (14%), Positives = 76/280 (27%), Gaps = 41/280 (14%)

Query: 6   MQMSEAKRAYRSAKEEGNR--QEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLP 63
           M+   AK A  S  +  ++   E    A    +      +Y +        YD   ++  
Sbjct: 1   MEFERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTS---ATYDKGYQFEE 57

Query: 64  EKHLL--PTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYE 121
           E  L   P     G   L+     +A +   +  ++      +      A   LG T  E
Sbjct: 58  ENPLRDHPQPFEEGLRRLQEGDLPNA-VLLFEAAVQQDPKHME------AWQYLGTTQAE 110

Query: 122 MFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDN 181
                +        A    +  ++L       P         +   A   + +       
Sbjct: 111 --NEQELL------AISALRRCLEL------KP---------DNQTALMALAVSFTNESL 147

Query: 182 LEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKK 241
             +A + L   L                     LG     L           +   +   
Sbjct: 148 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLF-LEVKELFLA 206

Query: 242 ---IEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNL 278
              ++    +      LG L     +YD+A+ C+  AL++
Sbjct: 207 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 246

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 66.0 bits (162), Expect = 7e-12
 Identities = 35/245 (14%), Positives = 71/245 (28%), Gaps = 54/245 (22%)

Query: 35  GDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKK 94
                 +GEY  A+       + +V+   E  +    + + + + R+ +     +  +KK
Sbjct: 45  AAAEYEKGEYETAIS----TLNDAVEQGRE--MRADYKVISKSFARIGNAYHK-LGDLKK 97

Query: 95  HLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENP 154
            +E  + +          T+L     E                K  ++   +      NP
Sbjct: 98  TIEYYQKSLTEHRTADILTKLRN--AE-------------KELKKAEAEAYV------NP 136

Query: 155 ATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHN 214
                    E  +     G       +   A K     ++   E+         +R + N
Sbjct: 137 ---------EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED---------ARGYSN 178

Query: 215 LGNVYMELRMWDKSREHIEQDIIICKK-IEHCQGEAKGYINLGELHYRVQKYDEAILCYQ 273
                 +L  + ++       I  C K IE      + YI        V++Y  A+    
Sbjct: 179 RAAALAKLMSFPEA-------IADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231

Query: 274 KALNL 278
            A   
Sbjct: 232 AARTK 236

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 60.6 bits (148), Expect = 6e-10
 Identities = 28/244 (11%), Positives = 72/244 (29%), Gaps = 53/244 (21%)

Query: 35  GDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKK 94
           G+      ++ EA++     Y+ + +   +   L    +          ++ A I  +  
Sbjct: 12  GNKFYKARQFDEAIE----HYNKAWELHKDITYL---NNRAAAEYEKGEYETA-ISTLND 63

Query: 95  HLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENP 154
            +E  ++             + +++  +                 +     L +T++   
Sbjct: 64  AVEQGREMRA------DYKVISKSFARI--------------GNAYHKLGDLKKTIEYYQ 103

Query: 155 ATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHN 214
                    + +  H     +  +L N E+  K       +         +  ++     
Sbjct: 104 ---------KSLTEHRT-ADILTKLRNAEKELKKAEAEAYV---------NPEKAEEARL 144

Query: 215 LGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQK 274
            G  Y     W  + +   + I    +      +A+GY N      ++  + EAI    K
Sbjct: 145 EGKEYFTKSDWPNAVKAYTEMIKRAPE------DARGYSNRAAALAKLMSFPEAIADCNK 198

Query: 275 ALNL 278
           A+  
Sbjct: 199 AIEK 202

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 57.9 bits (141), Expect = 4e-09
 Identities = 36/250 (14%), Positives = 77/250 (30%), Gaps = 65/250 (26%)

Query: 248 EAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALA-----------SQIDQNI 296
            A      G   Y+ +++DEAI  Y KA  L      +D               + +  I
Sbjct: 4   MADKEKAEGNKFYKARQFDEAIEHYNKAWEL-----HKDITYLNNRAAAEYEKGEYETAI 58

Query: 297 ETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAW 356
            T+  A+E   E++ + + + K    +    G +  +         L + IE        
Sbjct: 59  STLNDAVEQGREMRADYKVISKSFARI----GNAYHKL------GDLKKTIEYYQKSLTE 108

Query: 357 ---------LKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSW 407
                    L++ E   +K    + +    + ++   + G+ Y     +  A+K YT+  
Sbjct: 109 HRTADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMI 166

Query: 408 EM--------------YKSIGNLEG------QALAK--------VNMGNVLDSNGDWAGA 439
           +                  + +         +A+ K        +       +  ++A A
Sbjct: 167 KRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASA 226

Query: 440 LDAFQEGYRI 449
           L+        
Sbjct: 227 LETLDAARTK 236

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 62.4 bits (153), Expect = 1e-11
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 17/115 (14%)

Query: 165 YIDAHNNIGMLQMELDNLEEAKKFLIRGLEIC-NEEEVSEDDDGRSRLHHNLGNVYMELR 223
             +A  N+G    +  + +EA ++  + LE+     E            +NLGN Y +  
Sbjct: 34  SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA----------WYNLGNAYYKQG 83

Query: 224 MWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNL 278
            +D++ E+ ++ + +          A+ + NLG  +Y+   YDEAI  YQKAL L
Sbjct: 84  DYDEAIEYYQKALEL--DPRS----AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 58.6 bits (143), Expect = 3e-10
 Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 17/113 (15%)

Query: 167 DAHNNIGMLQMELDNLEEAKKFLIRGLEIC-NEEEVSEDDDGRSRLHHNLGNVYMELRMW 225
           +A  N+G    +  + +EA ++  + LE+     E            +NLGN Y +   +
Sbjct: 2   EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA----------WYNLGNAYYKQGDY 51

Query: 226 DKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNL 278
           D++ E+ ++ + +          A+ + NLG  +Y+   YDEAI  YQKAL L
Sbjct: 52  DEAIEYYQKALEL--DPRS----AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 98

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 67.3 bits (165), Expect = 2e-11
 Identities = 61/303 (20%), Positives = 101/303 (33%), Gaps = 53/303 (17%)

Query: 863  LDLSHNLLGNGTMEKLQQFFISSCQNYVDLT-LDLHCNRF---GPTTLFQICECPVLFTR 918
            L+L HN L      +L     + C N   LT L L  N           +          
Sbjct: 78   LNLQHNEL-----SQLSDKTFAFCTN---LTELHLMSNSIQKIKNNPFVK-------QKN 122

Query: 919  LGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQL 978
            L  L+LS N L+              + L  L + N  I +  ++     + A S+L +L
Sbjct: 123  LITLDLSHNGLSST----KLGTQVQLENLQELLLSNNKIQA--LKSEELDIFANSSLKKL 176

Query: 979  CIGYNSPVTGNAITNLLVK-LDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLG 1037
             +  N       I          +     L LN ++L   + ++LC     + + +L L 
Sbjct: 177  ELSSNQ------IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230

Query: 1038 CTNLGSDGSLQLVESLFSRAQES--VKLDLSYCGLESTCIHKFTASVSLVHGILELNLGG 1095
             + L +        + F   + +    LDLSY  L       F     L        L  
Sbjct: 231  NSQLST-----TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLE----YFFLEY 281

Query: 1096 NPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSEND-----TLEELNL 1150
            N I    +++L  L       ++ L L +     +  L  +  + +        LE LN+
Sbjct: 282  NNIQHLFSHSLHGLFN-----VRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM 336

Query: 1151 ADN 1153
             DN
Sbjct: 337  EDN 339

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 64.6 bits (158), Expect = 1e-10
 Identities = 62/342 (18%), Positives = 126/342 (36%), Gaps = 51/342 (14%)

Query: 819  NMKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKL 878
             ++ L++L +S           ++Q +    L    ++      L+LS N +     ++ 
Sbjct: 143  QLENLQELLLSN---------NKIQALKSEELDIFANSSLKK--LELSSNQI-----KEF 186

Query: 879  QQFFISSCQNYVDLT-LDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYL 937
                  +      L  L L+  + GP+   ++C      T +  L+LS ++L+    +  
Sbjct: 187  SPGCFHAIGR---LFGLFLNNVQLGPSLTEKLCLELAN-TSIRNLSLSNSQLS----TTS 238

Query: 938  STILKNCKV--LYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYN--SPVTGNAITN 993
            +T     K   L  L++   ++         D+      L    + YN    +  +++  
Sbjct: 239  NTTFLGLKWTNLTMLDLSYNNLNVVG----NDSFAWLPQLEYFFLEYNNIQHLFSHSLHG 294

Query: 994  L--LVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVE 1051
            L  +  L+  +SF++ +++   L K        L    CL HL +   ++       +  
Sbjct: 295  LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL---KCLEHLNMEDNDIPG-----IKS 346

Query: 1052 SLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLM 1111
            ++F+       L LS        +   T        +  LNL  N I K  ++A + L  
Sbjct: 347  NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL-- 404

Query: 1112 NPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADN 1153
                 L+VL L   ++G     Q  + L     + E+ L+ N
Sbjct: 405  -GH--LEVLDLGLNEIGQELTGQEWRGLE---NIFEIYLSYN 440

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 64.6 bits (158), Expect = 1e-10
 Identities = 76/418 (18%), Positives = 131/418 (31%), Gaps = 66/418 (15%)

Query: 863  LDLSHNLLGNGTMEKLQQFFISSCQNYVDLT-LDLHCNRFG--PTTLFQICECPVLFTRL 919
            L+L+HN        +L++   ++   Y  LT LD+  N        L Q          L
Sbjct: 30   LNLTHN--------QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKL------PML 75

Query: 920  GVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLC 979
             VLNL  N L+             C  L  L++ + SI    I+   +    +  L  L 
Sbjct: 76   KVLNLQHNELSQL----SDKTFAFCTNLTELHLMSNSIQK--IKN--NPFVKQKNLITLD 127

Query: 980  IGYNSPVTGNAITNLLVK-LDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGC 1038
            + +N       +++  +     L++  EL L+  K+     + L   A +S L  L L  
Sbjct: 128  LSHNG------LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSS-LKKLELSS 180

Query: 1039 TNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPI 1098
              +            F        L L+   L  +   K    ++    I  L+L  + +
Sbjct: 181  NQIKE-----FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS-IRNLSLSNSQL 234

Query: 1099 MKEGANALASLLMNPQCCLKVLVLSKCQL-GLAGVLQLIKALSENDTLEELNLADNASKE 1157
                      L       L +L LS   L  +        + +    LE   L  N  + 
Sbjct: 235  STTSNTTFLGL---KWTNLTMLDLSYNNLNVVGN-----DSFAWLPQLEYFFLEYNNIQH 286

Query: 1158 LTLQ--QNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRV 1215
            L       L +V   NL+ +          +       F        L + D+    I  
Sbjct: 287  LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN---DI-- 341

Query: 1216 ESAASGFDNSCTSSCQK-------NSSFECQFVQELSSAIGMAKPLQLLDLSNNGFST 1266
                 G  ++  +           NS    + +   +       PL +L+L+ N  S 
Sbjct: 342  ----PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK 395

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.9 bits (138), Expect = 3e-08
 Identities = 46/243 (18%), Positives = 88/243 (36%), Gaps = 37/243 (15%)

Query: 915  LFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAEST 974
            L T + VLNL+ N+L        +        L SL++   +I+   ++   +       
Sbjct: 23   LPTNITVLNLTHNQLR----RLPAANFTRYSQLTSLDVGFNTISK--LE--PELCQKLPM 74

Query: 975  LAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHL 1034
            L  L + +N  ++             L    EL+L    + K   +   +      L  L
Sbjct: 75   LKVLNLQHNE-LSQ-LSDKTFAFCTNLT---ELHLMSNSIQKIKNNPFVKQKN---LITL 126

Query: 1035 MLGCTNLGS--DGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTA--SVSLVHGILE 1090
             L    L S   G+   +E+L        +L LS   +++    +     + SL      
Sbjct: 127  DLSHNGLSSTKLGTQVQLENL-------QELLLSNNKIQALKSEELDIFANSSLKK---- 175

Query: 1091 LNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNL 1150
            L L  N I +       ++       L  L L+  QLG + + + +     N ++  L+L
Sbjct: 176  LELSSNQIKEFSPGCFHAIGR-----LFGLFLNNVQLGPS-LTEKLCLELANTSIRNLSL 229

Query: 1151 ADN 1153
            +++
Sbjct: 230  SNS 232

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.9 bits (125), Expect = 1e-06
 Identities = 48/240 (20%), Positives = 82/240 (34%), Gaps = 32/240 (13%)

Query: 863  LDLSHNLLGNGTMEKLQQFFISSCQNYVDLT-LDLHCNRFGPTTLFQICECPVLFTRLGV 921
            LDL  N +G     +L        +N   +  + L  N++   T       P     L  
Sbjct: 410  LDLGLNEIGQ----ELTGQEWRGLEN---IFEIYLSYNKYLQLTRNSFALVP----SLQR 458

Query: 922  LNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIG 981
            L L    L +       +  +  + L  L++ N +I +       D L     L  L + 
Sbjct: 459  LMLRRVALKN--VDSSPSPFQPLRNLTILDLSNNNIANIN----DDMLEGLEKLEILDLQ 512

Query: 982  YN--SPVTGNAITNLLVK-LDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGC 1038
            +N  + +  +A     +  L  L     LNL      +  V+    L +   L  + LG 
Sbjct: 513  HNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFE---LKIIDLGL 569

Query: 1039 TNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPI 1098
             NL +     L  S+F+       L+L    + S     F  +      + EL++  NP 
Sbjct: 570  NNLNT-----LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFR---NLTELDMRFNPF 621

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.8 bits (163), Expect = 4e-11
 Identities = 61/422 (14%), Positives = 121/422 (28%), Gaps = 82/422 (19%)

Query: 788  KDIIEVSIDGWVQKRLMKLYIECCKELSEAP----NMKLLKKLYISEVEDEVIVSECELQ 843
             D   V +D     R+  L +         P     +  LK L      + V       +
Sbjct: 312  GDQPGVDLDN--NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDE 369

Query: 844  DISVTPLLNALHTHK------------TVALLDLSHNLLGNGTMEKLQQFFISSCQNYVD 891
            +++        H  +             + L DL  + +      +++     S  +  D
Sbjct: 370  ELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP--EMKPIKKDSRISLKD 427

Query: 892  LTLDLHCNRFG--PTTLFQICECPVLFTRLGVLNLSGNRLT-----------DACGSYLS 938
              +    NR       + +        T+L ++  + +  T           ++  +   
Sbjct: 428  TQIGNLTNRITFISKAIQR-------LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480

Query: 939  TI----LKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNS----PVTGNA 990
                    N K L  + + NC      + ++ D L     L  L I  N           
Sbjct: 481  ENEELSWSNLKDLTDVELYNCPN----MTQLPDFLYDLPELQSLNIACNRGISAAQLKAD 536

Query: 991  ITNLLVKLDTLKSFSELNLNGLKLSK-PVVDRLCQLAKTSCLTHLMLGCTNL------GS 1043
             T L    DT        +    L + P    L ++ K   L  L      +      G+
Sbjct: 537  WTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVK---LGLLDCVHNKVRHLEAFGT 593

Query: 1044 DGSLQ-----------LVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELN 1092
            +  L            + E   +   +   L  S+  L+   I     + S+   +  ++
Sbjct: 594  NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY--IPNIFNAKSVYV-MGSVD 650

Query: 1093 LGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDT-LEELNLA 1151
               N I  EG N   S+          + LS  ++      +    L    + +  + L+
Sbjct: 651  FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-----KFPTELFATGSPISTIILS 705

Query: 1152 DN 1153
            +N
Sbjct: 706  NN 707

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.7 bits (129), Expect = 4e-07
 Identities = 60/401 (14%), Positives = 123/401 (30%), Gaps = 70/401 (17%)

Query: 801  KRLMKLYIECCKELSEAP----NMKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHT 856
            K L  + +  C  +++ P    ++  L+ L I+                  T L +   T
Sbjct: 491  KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQL----KADWTRLADDEDT 546

Query: 857  HKTVALLDLSHNLLGN-------GTMEKLQQFFISSCQ--------NYVDLT-LDLHCNR 900
               + +  + +N L           M KL        +          V LT L L  N+
Sbjct: 547  GPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQ 606

Query: 901  FG--PTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSIT 958
                P              ++  L  S N+L      +     K+  V+ S++     I 
Sbjct: 607  IEEIPEDFCAFT------DQVEGLGFSHNKLKYIPNIFN---AKSVYVMGSVDFSYNKIG 657

Query: 959  SRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVK-LDTLKSFSELNLNGLKLSK- 1016
            S    +       +             ++ N I     +   T    S + L+   ++  
Sbjct: 658  S--EGRNISCSMDDYKGINASTVT---LSYNEIQKFPTELFATGSPISTIILSNNLMTSI 712

Query: 1017 ---PVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESL-FSRAQESVKLDLSYCGLES 1072
                +  +      T  LT + L    L S     L +    +       +D+SY    S
Sbjct: 713  PENSLKPKDGNYKNTYLLTTIDLRFNKLTS-----LSDDFRATTLPYLSNMDVSYNCFSS 767

Query: 1073 --TCIHKFTA--SVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLG 1128
              T     +   +  + H   + +  GN I+++    + +        L  L +    + 
Sbjct: 768  FPTQPLNSSQLKAFGIRH---QRDAEGNRILRQWPTGITTCPS-----LIQLQIGSNDIR 819

Query: 1129 LAGVLQLIKALSENDTLEELNLADNASKELTLQQNLSSVNS 1169
                 ++ + L+    L  L++ADN +  + +      + +
Sbjct: 820  -----KVDEKLTPQ--LYILDIADNPNISIDVTSVCPYIEA 853

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.6 bits (113), Expect = 3e-05
 Identities = 45/348 (12%), Positives = 102/348 (29%), Gaps = 61/348 (17%)

Query: 748  LYYLQLPKEKISKGLLPIIQHMKYGGRSLESFDAFKDQLGKDIIEVSIDGWVQKRLMKLY 807
            +   +       K     +   +  G  ++ F    + L +     S+      +L  L 
Sbjct: 522  IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKM--VKLGLLD 579

Query: 808  IECCK--ELSEAPNMKLLKKLY-----ISEVEDEVIVSECELQDISV-----TPLLNALH 855
                K   L        L  L      I E+ ++      +++ +         + N  +
Sbjct: 580  CVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFN 639

Query: 856  THKTVAL--LDLSHNLLGNGTMEKLQQFFISSCQNYVDLT-LDLHCNRFG--PTTLFQIC 910
                  +  +D S+N +     E             ++ + + L  N     PT LF   
Sbjct: 640  AKSVYVMGSVDFSYNKI---GSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG 696

Query: 911  ECPVLFTRLGVLNLSGNRLT---DACGSYLSTILKNCKVLYSLNIENCSITS--RTIQKV 965
                  + +  + LS N +T   +          KN  +L ++++    +TS        
Sbjct: 697  ------SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDF--- 747

Query: 966  ADALGAESTLAQLCIGYNSPVTGNAITNL------LVKLDTLKSFSELNLNGLKLSKPVV 1019
                     L+ + + YN        ++         +L       + +  G ++ +   
Sbjct: 748  --RATTLPYLSNMDVSYNC------FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP 799

Query: 1020 DRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSY 1067
              +        L  L +G  ++       + E L  +      LD++ 
Sbjct: 800  TGITTCPS---LIQLQIGSNDIRK-----VDEKLTPQLYI---LDIAD 836

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 60.5 bits (148), Expect = 5e-11
 Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 17/115 (14%)

Query: 165 YIDAHNNIGMLQMELDNLEEAKKFLIRGLEIC-NEEEVSEDDDGRSRLHHNLGNVYMELR 223
             +A  N+G    +  + +EA ++  + LE+  N  E            +NLGN Y +  
Sbjct: 8   SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA----------WYNLGNAYYKQG 57

Query: 224 MWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNL 278
            +D++ E+ ++ + +     +    A+ + NLG  +Y+   YDEAI  YQKAL L
Sbjct: 58  DYDEAIEYYQKALEL--DPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 66.0 bits (161), Expect = 5e-11
 Identities = 14/116 (12%), Positives = 34/116 (29%), Gaps = 15/116 (12%)

Query: 164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELR 223
           +   A   +   ++ + +    +  + RGL +           G       LG V    +
Sbjct: 21  QDFVAWLMLADAELGMGDTTAGEMAVQRGLAL---------HPGHPEAVARLGRVRWTQQ 71

Query: 224 MWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLA 279
              ++   ++      +  +         + LG       + + A   Y +A  L 
Sbjct: 72  RHAEAAVLLQ------QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL 121

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 37/278 (13%), Positives = 86/278 (30%), Gaps = 53/278 (19%)

Query: 2   GRDEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKY 61
            + E+ ++  ++   S     + + +       G +  + G    A      D+  ++  
Sbjct: 19  LQQEVILARMEQILASRALTDDERAQL-LYE-RGVLYDSLGLRALARN----DFSQALAI 72

Query: 62  LPEKHLLPTCQSLGEVYLRLEHFKDALI-YQVKKHLELAKDASDLVEQQRACTQLGRTYY 120
            P+  +      LG    +  +F  A   +     LEL    +       A    G   Y
Sbjct: 73  RPD--MPEVFNYLGIYLTQAGNFDAAYEAF--DSVLELDPTYNY------AHLNRGIALY 122

Query: 121 EMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELD 180
               R          A+    +  +       +P                 + + + +LD
Sbjct: 123 YGG-RDKL-------AQDDLLAFYQD------DP---------NDPFRSLWLYLAEQKLD 159

Query: 181 NLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK 240
             ++AK+ L +  E        ++  G + +   LGN+  E  + ++ +     +  +  
Sbjct: 160 -EKQAKEVLKQHFEK-----SDKEQWGWNIVEFYLGNIS-EQTLMERLKADATDNTSL-- 210

Query: 241 KIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNL 278
                  E      LG+ +  +   D A   ++ A+  
Sbjct: 211 AEHLS--ET--NFYLGKYYLSLGDLDSATALFKLAVAN 244

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 60.8 bits (148), Expect = 5e-10
 Identities = 36/255 (14%), Positives = 66/255 (25%), Gaps = 45/255 (17%)

Query: 25  QEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF 84
               R + V+   L+   +    L               E+  L      G +Y  L   
Sbjct: 2   NTSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQL--LYERGVLYDSLGLR 59

Query: 85  KDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAM 144
             A      + L +  D  +          LG    +        ++    A + F S +
Sbjct: 60  ALA-RNDFSQALAIRPDMPE------VFNYLGIYLTQA------GNFD--AAYEAFDSVL 104

Query: 145 KLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSED 204
           +L      +P          Y  AH N G+        + A+  L+   +        + 
Sbjct: 105 EL------DP---------TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-------DP 142

Query: 205 DDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQK 264
           +D        L     +L   D+ +          K  +   G       LG +      
Sbjct: 143 NDPFR--SLWLYLAEQKL---DEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNI-SEQTL 196

Query: 265 YDEAILCYQKALNLA 279
            +          +LA
Sbjct: 197 MERLKADATDNTSLA 211

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 60.8 bits (148), Expect = 6e-10
 Identities = 36/286 (12%), Positives = 74/286 (25%), Gaps = 56/286 (19%)

Query: 164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEIC-NEEEVSEDDDGRSRLHHNLGNVYMEL 222
           E        G+L   L     A+    + L I  +  EV           + LG    + 
Sbjct: 41  ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEV----------FNYLGIYLTQA 90

Query: 223 RMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSM 282
             +D + E  +  + +     +       ++N G   Y   +   A              
Sbjct: 91  GNFDAAYEAFDSVLEL--DPTY----NYAHLNRGIALYYGGRDKLAQDDLLAFYQD---- 140

Query: 283 EDEDALASQIDQNIETVKKAIEVMDELKKEEQ---NLKKLTRNMIIAKGTSQERKYLLQQ 339
           +  D   S      E      +  + LK+  +     +     +    G        + +
Sbjct: 141 DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGN-------ISE 193

Query: 340 NASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKA 399
              ++RL              +         + L     LS++   +G+ Y  L   + A
Sbjct: 194 QTLMERLKA------------DATD-----NTSL--AEHLSETNFYLGKYYLSLGDLDSA 234

Query: 400 IKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQE 445
              +        ++ N     +        L   G     L    +
Sbjct: 235 TALFK------LAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 64.3 bits (156), Expect = 1e-10
 Identities = 46/316 (14%), Positives = 104/316 (32%), Gaps = 54/316 (17%)

Query: 41  RGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAK 100
           + E  + L+      +  +     +         G+       +       + K ++L  
Sbjct: 81  QEEMEKTLQ----QMEEVLGSAQVEAQA--LMLKGKALNVTPDYSPEAEVLLSKAVKLEP 134

Query: 101 DASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSS 160
           +  +      A  QLG  Y++          +  +A   F  A+                
Sbjct: 135 ELVE------AWNQLGEVYWKK------GDVT--SAHTCFSGALTH-------------- 166

Query: 161 FLKEYIDAHNNIGML--QMELDNLEEAKKFLIRGLEICNEEEVSED-DDGRSRLHHNLGN 217
              +   +  N+ M+  Q++ D+ +E  + ++  +    +  V  D  DGRS   + LGN
Sbjct: 167 --CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVR-QAKLAVQMDVLDGRS--WYILGN 221

Query: 218 VYM--------ELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAI 269
            Y+          ++  ++     Q     K           ++N   LH   + Y EA+
Sbjct: 222 AYLSLYFNTGQNPKISQQALSAYAQAE---KVDRKASSNPDLHLNRATLHKYEESYGEAL 278

Query: 270 LCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELK-KEEQNLKKLTRNMIIAKG 328
             + +A  L  +  +      Q+ + +  +   +E   + K K+ Q++    R   +   
Sbjct: 279 EGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRPAHLGPC 338

Query: 329 TSQERKYLLQQNASLD 344
                +    Q  +L+
Sbjct: 339 GDGRYQSASGQKMTLE 354

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 63.9 bits (155), Expect = 2e-10
 Identities = 38/287 (13%), Positives = 81/287 (28%), Gaps = 36/287 (12%)

Query: 10  EAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFR--IDYDVSVKYLPEKHL 67
           EA+     A +      EA W   +G++   +G+   A   F   + +  +   L    +
Sbjct: 121 EAEVLLSKAVKLEPELVEA-WNQ-LGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSM 178

Query: 68  LPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSD 127
           +              H  D++    K  +++            +   LG  Y  ++  + 
Sbjct: 179 VLRQLQTDSGDEHSRHVMDSVRQA-KLAVQMDVLDGR------SWYILGNAYLSLYFNTG 231

Query: 128 DDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKK 187
            +    + A   +  A K+ +    NP            D H N   L    ++  EA +
Sbjct: 232 QNPKISQQALSAYAQAEKVDRKASSNP------------DLHLNRATLHKYEESYGEALE 279

Query: 188 FLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQG 247
              +   +         D            +   L       E   +     KK++   G
Sbjct: 280 GFSQAAAL---------DPAWPEPQQREQQLLEFLSRLTSLLESKGK--TKPKKLQSMLG 328

Query: 248 --EAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQI 292
                     G+  Y+     +  L  +    L   +     +  ++
Sbjct: 329 SLRPAHLGPCGDGRYQSASGQKMTLELKPLSTLQPGVNSGTVVLGKV 375

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 54.6 bits (131), Expect = 2e-07
 Identities = 41/376 (10%), Positives = 122/376 (32%), Gaps = 56/376 (14%)

Query: 135 NAKKYFKSAMKLAQTLKENPATSRSSFLK--EYIDAHNNIGMLQMELDNLEEAKKFLIRG 192
           + ++  K  ++  Q L +     R S+ +     DA      +Q   + +E+  + +   
Sbjct: 38  DEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQ---EEMEKTLQQM--- 91

Query: 193 LEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKK-IEHCQGEAKG 251
                 EEV       ++     G             ++  +  ++  K ++      + 
Sbjct: 92  ------EEVLGSAQVEAQALMLKGKALNVTP------DYSPEAEVLLSKAVKLEPELVEA 139

Query: 252 YINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKK 311
           +  LGE++++      A  C+  AL      +++ +L     QN+  V + ++     + 
Sbjct: 140 WNQLGEVYWKKGDVTSAHTCFSGALTHC---KNKVSL-----QNLSMVLRQLQTDSGDEH 191

Query: 312 EEQNL-------KKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAK 364
               +         +  +++  +       + +  NA     +          K  + A 
Sbjct: 192 SRHVMDSVRQAKLAVQMDVLDGR------SWYILGNA----YLSLYFNTGQNPKISQQAL 241

Query: 365 RKKRIASELCDKGKLS-DSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAK 423
                A ++  K   + D  L     ++    + +A++ ++++  +             +
Sbjct: 242 SAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD------PAWPEPQ 295

Query: 424 VNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEARRL 483
                +L+        L++  +     +++ L S++ + L               +   L
Sbjct: 296 QREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRPAHLGP--CGDGRYQSASGQKMTL 353

Query: 484 QHE-IDKLKESKSEDL 498
           + + +  L+   +   
Sbjct: 354 ELKPLSTLQPGVNSGT 369

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 59.9 bits (145), Expect = 1e-10
 Identities = 20/145 (13%), Positives = 45/145 (31%), Gaps = 15/145 (10%)

Query: 164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELR 223
           + ++   ++   Q +    E+A             + +   D   SR    LG     + 
Sbjct: 19  DTLEQLYSLAFNQYQSGXYEDAHXVF---------QALCVLDHYDSRFFLGLGACRQAMG 69

Query: 224 MWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSME 283
            +D +                   E +   +  E   +  +  EA      A  L  +  
Sbjct: 70  QYDLAIHSYS------YGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXP 123

Query: 284 DEDALASQIDQNIETVKKAIEVMDE 308
           +   L++++   +E +K   E+  E
Sbjct: 124 EFXELSTRVSSMLEAIKLKKEMKHE 148

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 63.5 bits (154), Expect = 2e-10
 Identities = 33/292 (11%), Positives = 79/292 (27%), Gaps = 28/292 (9%)

Query: 166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMW 225
           I A + +G +      L  +   + +  ++       +              +       
Sbjct: 53  IVATSVLGEVLHCKGELTRSLALMQQTEQMA---RQHDVWHYALWSLIQQSEILFAQGFL 109

Query: 226 DKSREHIEQ--DIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSME 283
             + E  E+   +I  + +E             +L +   + DEA    +  + +  S +
Sbjct: 110 QTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ 169

Query: 284 DEDALA-----SQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQ 338
            +  L       Q       +  A   ++ L   E  L     +       ++ R    Q
Sbjct: 170 PQQQLQCLAMLIQCSLARGDLDNARSQLNRL---ENLLGNGKYHSDWISNANKVRVIYWQ 226

Query: 339 QNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNK 398
                            WL+H    +       +          +  I  +   L +F  
Sbjct: 227 MTGDKAAAAN-------WLRHTAKPEFANNHFLQG--------QWRNIARAQILLGEFEP 271

Query: 399 AIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIA 450
           A     +  E  +S+  +       + +  +    G  + A     +  ++A
Sbjct: 272 AEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 323

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 61.9 bits (150), Expect = 5e-10
 Identities = 29/281 (10%), Positives = 81/281 (28%), Gaps = 29/281 (10%)

Query: 7   QMSEAKRAYRSA----KEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYL 62
           +++ +    +      ++               +IL  +G    A +     + +  +  
Sbjct: 68  ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH 127

Query: 63  PEKHLLP--TCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYY 120
            E+  +     +   ++        +A     +  +E+        +Q +    L +   
Sbjct: 128 LEQLPMHEFLVRIRAQLLWAWARLDEAEAS-ARSGIEVLSSYQP-QQQLQCLAMLIQCS- 184

Query: 121 EMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELD 180
               R D D     NA+        L    K +     +        A+    +      
Sbjct: 185 --LARGDLD-----NARSQLNRLENLLGNGKYHSDWISN--------ANKVRVIYWQMTG 229

Query: 181 NLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK 240
           +   A  +L         +    ++        N+    + L  ++ +   +E+     +
Sbjct: 230 DKAAAANWLRH-----TAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENAR 284

Query: 241 KIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQS 281
            +       +  + L +L+++  +  +A      AL LA  
Sbjct: 285 SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 54.2 bits (130), Expect = 1e-07
 Identities = 31/272 (11%), Positives = 70/272 (25%), Gaps = 38/272 (13%)

Query: 18  AKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQS---L 74
            K+       A +  +   +  N G   EA +  +    ++++ LP         +   L
Sbjct: 4   IKDIREDTMHAEFNALRAQVAINDGNPDEAERLAK----LALEELPPGWFYSRIVATSVL 59

Query: 75  GEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEM-FLRSDDDHYSI 133
           GEV         +L    ++  ++A+          +  Q     +   FL++       
Sbjct: 60  GEVLHCKGELTRSLALM-QQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQT------- 111

Query: 134 RNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGL 193
             A +  + A +L                            L      L+EA+     G+
Sbjct: 112 --AWETQEKAFQLINEQHLEQLPMHEF-------LVRIRAQLLWAWARLDEAEASARSGI 162

Query: 194 EICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYI 253
           E+ +          + +    L    +     D +R  + +     + +         +I
Sbjct: 163 EVLSS----YQPQQQLQCLAMLIQCSLARGDLDNARSQLNR----LENLLGNGKYHSDWI 214

Query: 254 -----NLGELHYRVQKYDEAILCYQKALNLAQ 280
                              A    +       
Sbjct: 215 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEF 246

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 64.7 bits (157), Expect = 2e-10
 Identities = 53/461 (11%), Positives = 119/461 (25%), Gaps = 76/461 (16%)

Query: 2   GRDEMQMSEAKRAYRSA----KEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDV 57
            R  +   EA  A R+A           +    A+      +        L         
Sbjct: 163 KRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASN-NGGKQALETVQRLLP----VLCQ 217

Query: 58  SVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGR 117
           +    P + +     S       LE  +  L     +   L  D      Q  A      
Sbjct: 218 AHGLTPAQVV--AIASHDGGKQALETMQRLLPVL-CQAHGLPPD------QVVAIASNIG 268

Query: 118 TYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQM 177
               +              +   +    L Q     P         + + A  + G  + 
Sbjct: 269 GKQAL--------------ETVQRLLPVLCQAHGLTP---------DQVVAIASHGGGKQ 305

Query: 178 ELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDII 237
            L+ ++     L +   +            +     +       L    +    + Q   
Sbjct: 306 ALETVQRLLPVLCQAHGL---------TPDQVVAIASHDGGKQALETVQRLLPVLCQAH- 355

Query: 238 ICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALAS-QIDQNI 296
               +   Q  A    + G     ++     +    +A  L  + +   A+AS    Q +
Sbjct: 356 ---GLTPDQVVA--IASNGGGKQALETVQRLLPVLCQAHGL--TPDQVVAIASNGGKQAL 408

Query: 297 ETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIE-KSSMIFA 355
           ETV++ + V+ +      +      +    K   Q  + + +    L +      + + A
Sbjct: 409 ETVQRLLPVLCQAHGLTPDQVVAIASHDGGK---QALETVQRLLPVLCQTHGLTPAQVVA 465

Query: 356 WLKHCEYAKRKKRI--ASELCDKG-KLSDSFLVI----GESYQKLRKFNKAIKWYTKSWE 408
              H    +  + +     +  +   L+   +V         Q L    + +        
Sbjct: 466 IASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLC---- 521

Query: 409 MYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRI 449
             ++ G    Q +A  + G    +       L    + + +
Sbjct: 522 --QAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGL 560

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.7 bits (139), Expect = 2e-08
 Identities = 36/307 (11%), Positives = 76/307 (24%), Gaps = 35/307 (11%)

Query: 10  EAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLP 69
                   A      Q  A  A+      +        L         +    P +    
Sbjct: 413 RLLPVLCQAHGLTPDQVVA-IAS-HDGGKQALETVQRLLP----VLCQTHGLTPAQV--V 464

Query: 70  TCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGR-----TYYEMFL 124
              S       LE  +  L    + H         +         L              
Sbjct: 465 AIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAH 524

Query: 125 RSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLK-EYIDAHNNIGMLQMELDNLE 183
               D      +    K A++  Q L   P   ++  L  + + A  + G  +  L+ ++
Sbjct: 525 GLTPDQVVAIASNGGGKQALETVQRL--LPVLCQAHGLTPDQVVAIASNGGGKQALETVQ 582

Query: 184 EAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIE 243
                L +   +   + V+           +       L    +    + Q         
Sbjct: 583 RLLPVLCQAHGLTQVQVVA---------IASNIGGKQALETVQRLLPVLCQAH------G 627

Query: 244 HCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQ--IDQNIETVKK 301
               +     +       ++     +    +A  L    +   A+AS     Q +ETV++
Sbjct: 628 LTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP--DQVVAIASNGGGKQALETVQR 685

Query: 302 AIEVMDE 308
            + V+ +
Sbjct: 686 LLPVLCQ 692

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.8 bits (134), Expect = 1e-07
 Identities = 57/490 (11%), Positives = 124/490 (25%), Gaps = 95/490 (19%)

Query: 10  EAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLP 69
                   A       +    A+  G   +        L         +      + +  
Sbjct: 549 RLLPVLCQAHGL-TPDQVVAIAS-NGGGKQALETVQRLLP----VLCQAHGLTQVQVV-- 600

Query: 70  TCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDD 129
              S       LE  +  L         L +       Q  A          +       
Sbjct: 601 AIASNIGGKQALETVQRLL-------PVLCQAHGLTPAQVVAIASHDGGKQAL------- 646

Query: 130 HYSIRNAKKYFKSAMK-LAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKF 188
                   +  +  +  L Q     P         + + A  + G  +  L+ ++     
Sbjct: 647 --------ETVQRLLPVLCQAHGLTP---------DQVVAIASNGGGKQALETVQRLLPV 689

Query: 189 LIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGE 248
           L +   +  E+ V+           +       L    +    + Q       +   Q  
Sbjct: 690 LCQAHGLTQEQVVA---------IASNNGGKQALETVQRLLPVLCQAH----GLTPDQVV 736

Query: 249 AKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDE 308
           A    + G     ++     +    +A  L        A+AS I       K+A+E +  
Sbjct: 737 A--IASNGGGKQALETVQRLLPVLCQAHGLTP--AQVVAIASNI-----GGKQALETVQR 787

Query: 309 LKKEEQNLKKLTRNMIIA----KGTSQERKYLLQQNASLDRLIE-KSSMIFAWLKHCEYA 363
           L         LT   ++A     G  Q  + + +    L +        + A   +    
Sbjct: 788 LLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGK 847

Query: 364 K---RKKRIASELCDKGKLSDSFLVI----GESYQKLRKFNKAIKWYTKSWEM------- 409
           +     +R+   LC    L+   +V         Q L    + +    +   +       
Sbjct: 848 QALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVA 907

Query: 410 ------YKSIGNLEGQALAKV-------NMGNVLDSNGDWAGALDAFQEGYRIAVEAN-L 455
                  +++  ++              +    + SN     AL+  Q    +  + + L
Sbjct: 908 IASNGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGL 967

Query: 456 PSVQLSALEN 465
              Q+ A+ +
Sbjct: 968 TPNQVVAIAS 977

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 54.3 bits (130), Expect = 2e-07
 Identities = 38/302 (12%), Positives = 77/302 (25%), Gaps = 59/302 (19%)

Query: 10  EAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLP 69
           +       A      Q  A  +N      +        L      + ++   +       
Sbjct: 481 QLLPVLCQAHGLTPDQVVAIASN--IGGKQALATVQRLLPVLCQAHGLTPDQVV------ 532

Query: 70  TCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDD 129
              S G     LE  +  L     +   L  D      Q  A    G     +       
Sbjct: 533 AIASNGGGKQALETVQRLLPVL-CQAHGLTPD------QVVAIASNGGGKQAL------- 578

Query: 130 HYSIRNAKKYFKSAMK-LAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKF 188
                   +  +  +  L Q                 + A  +    +  L+ ++     
Sbjct: 579 --------ETVQRLLPVLCQAHGLTQ---------VQVVAIASNIGGKQALETVQRLLPV 621

Query: 189 LIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGE 248
           L +   +   + V+           +       L    +    + Q       +   Q  
Sbjct: 622 LCQAHGLTPAQVVA---------IASHDGGKQALETVQRLLPVLCQAH----GLTPDQVV 668

Query: 249 AKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALAS--QIDQNIETVKKAIEVM 306
           A    + G     ++     +    +A  L Q  E   A+AS     Q +ETV++ + V+
Sbjct: 669 A--IASNGGGKQALETVQRLLPVLCQAHGLTQ--EQVVAIASNNGGKQALETVQRLLPVL 724

Query: 307 DE 308
            +
Sbjct: 725 CQ 726

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.4 bits (157), Expect = 2e-10
 Identities = 68/429 (15%), Positives = 137/429 (31%), Gaps = 61/429 (14%)

Query: 863  LDLSHNLLGNGTMEKLQQFFISSCQNYVDL-TLDLHCNRFGPTTLFQICECPVLFTRLGV 921
            L L    L +     L+  +  + +    L  LDL  N+        +         L  
Sbjct: 102  LRLYFCGLSDAV---LKDGYFRNLKA---LTRLDLSKNQI---RSLYLHPSFGKLNSLKS 152

Query: 922  LNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGA--ESTLAQLC 979
            ++ S N++   C   L   L+    L   ++   S+ SR        +       L  L 
Sbjct: 153  IDFSSNQIFLVCEHELEP-LQGKT-LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD 210

Query: 980  IGYN---SPVTGNAITNL----LVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLT 1032
            +  N     +TGN    +       L               +  P  +    LA++S + 
Sbjct: 211  VSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS-VR 269

Query: 1033 HLMLGCTNLGSDGSLQLVESLFSRAQESVK-LDLSYCGLESTCIHKFTASVSLVHGILEL 1091
            HL L      S G +  + S      + +K L+L+Y  +       F    +L      L
Sbjct: 270  HLDL------SHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQV----L 319

Query: 1092 NLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGL--AGVLQLIKALSENDTLEELN 1149
            NL  N + +  ++    L   P+  +  + L K  + +      + ++       L+ L+
Sbjct: 320  NLSYNLLGELYSSNFYGL---PK--VAYIDLQKNHIAIIQDQTFKFLE------KLQTLD 368

Query: 1150 LADNASKELTLQQNLSSVN-SENLQPALKTSDCVSKEVDTDQHGL-----FAMNTDCNDL 1203
            L DNA   +    ++  +  S N    L   +  +  +   ++ L              L
Sbjct: 369  LRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHL 428

Query: 1204 EVADSEDDKIRVESAASGFDNSCT------SSCQKNSSFECQFVQELSSAIGMAKPLQLL 1257
            ++     ++    S       + +             ++E +              LQ+L
Sbjct: 429  QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL---CWDVFEGLSHLQVL 485

Query: 1258 DLSNNGFST 1266
             L++N  ++
Sbjct: 486  YLNHNYLNS 494

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 60.2 bits (146), Expect = 4e-09
 Identities = 60/346 (17%), Positives = 100/346 (28%), Gaps = 68/346 (19%)

Query: 838  SECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDL-TLDL 896
                ++D           +      LDLSH  +       L      + ++   L  L+L
Sbjct: 248  GFHNIKDPDQNTFAGLARSSVRH--LDLSHGFV-----FSLNSRVFETLKD---LKVLNL 297

Query: 897  HCNRFG--PTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIEN 954
              N+        F           L VLNLS N L +      S+       +  ++++ 
Sbjct: 298  AYNKINKIADEAFYG------LDNLQVLNLSYNLLGELY----SSNFYGLPKVAYIDLQK 347

Query: 955  CSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKL 1014
              I                 L  L +  N           L  +  + S  ++ L+G KL
Sbjct: 348  NHIAIIQ----DQTFKFLEKLQTLDLRDN----------ALTTIHFIPSIPDIFLSGNKL 393

Query: 1015 SKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLES-T 1073
                   L ++        + L    L +   L        R      L L+     S +
Sbjct: 394  V-----TLPKIN--LTANLIHLSENRLENLDIL----YFLLRVPHLQILILNQNRFSSCS 442

Query: 1074 CIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVL 1133
                 + + SL      L LG N +       L   +      L+VL L+   L      
Sbjct: 443  GDQTPSENPSLEQ----LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL-----N 493

Query: 1134 QLIK-ALSENDTLEELNLADNASKELTLQQNLSSVNSENLQPALKT 1178
             L     S    L  L+L  N          L+ ++  +L   L+ 
Sbjct: 494  SLPPGVFSHLTALRGLSLNSN---------RLTVLSHNDLPANLEI 530

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.1 bits (138), Expect = 3e-08
 Identities = 54/294 (18%), Positives = 99/294 (33%), Gaps = 57/294 (19%)

Query: 852  NALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFG--PTTLFQI 909
                T K + +L+L++N +      K+         N     L+L  N  G   ++ F  
Sbjct: 284  RVFETLKDLKVLNLAYNKI-----NKIADEAFYGLDNLQ--VLNLSYNLLGELYSSNFY- 335

Query: 910  CECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADAL 969
                    ++  ++L  N +            K  + L +L++ + ++T+         +
Sbjct: 336  -----GLPKVAYIDLQKNHIA----IIQDQTFKFLEKLQTLDLRDNALTT---------I 377

Query: 970  GAESTLAQLCIGYNSPVT--------------GNAITNL--LVKLDTLKSFSELNLNGLK 1013
                ++  + +  N  VT               N + NL  L  L  +     L LN  +
Sbjct: 378  HFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR 437

Query: 1014 LSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLEST 1073
             S    D+         L  L LG   L      +L   +F        L L++  L S 
Sbjct: 438  FSSCSGDQTPSE--NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL 495

Query: 1074 CIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQL 1127
                F+   +L      L+L  N +     N L +        L++L +S+ QL
Sbjct: 496  PPGVFSHLTALR----GLSLNSNRLTVLSHNDLPAN-------LEILDISRNQL 538

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.6 bits (103), Expect = 4e-04
 Identities = 49/268 (18%), Positives = 78/268 (29%), Gaps = 57/268 (21%)

Query: 913  PVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAE 972
            P +      L LS N +     +  ++     + L  L + +      TI K  +A    
Sbjct: 20   PQVLNTTERLLLSFNYIR----TVTASSFPFLEQLQLLELGSQYT-PLTIDK--EAFRNL 72

Query: 973  STLAQLCIGYNSPVTGNAITNLLVK-LDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCL 1031
              L  L +G +       I  L       L    EL L    LS  V+            
Sbjct: 73   PNLRILDLGSSK------IYFLHPDAFQGLFHLFELRLYFCGLSDAVLK-------DGYF 119

Query: 1032 THLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHK-FTASVSLVHGILE 1090
             +L      L                    +LDLS   + S  +H  F    SL      
Sbjct: 120  RNL----KAL-------------------TRLDLSKNQIRSLYLHPSFGKLNSLKS---- 152

Query: 1091 LNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALS--ENDTLEEL 1148
            ++   N I     + L  L       L    L+   L     +   K ++   N  LE L
Sbjct: 153  IDFSSNQIFLVCEHELEPLQGKT---LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEIL 209

Query: 1149 NLADNASKEL---TLQQNLSSVNSENLQ 1173
            +++ N             +S   + +L 
Sbjct: 210  DVSGNGWTVDITGNFSNAISKSQAFSLI 237

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 64.4 bits (156), Expect = 2e-10
 Identities = 59/450 (13%), Positives = 130/450 (28%), Gaps = 75/450 (16%)

Query: 164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELR 223
            + D+ NN+  ++ E  N+EEA +   + LE+             +  H NL +V  +  
Sbjct: 7   THADSLNNLANIKREQGNIEEAVRLYRKALEV---------FPEFAAAHSNLASVLQQQG 57

Query: 224 MWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKAL------- 276
              ++  H +      + I      A  Y N+G     +Q    A+ CY +A+       
Sbjct: 58  KLQEALMHYK------EAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFA 111

Query: 277 ----NLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQE 332
               NLA   +D    +  I + I + + A+++       + +      N+       Q 
Sbjct: 112 DAHSNLASIHKD----SGNIPEAIASYRTALKL-------KPDFPDAYCNLAHCL---QI 157

Query: 333 RKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQK 392
                  +  + +L+       + +       R   +         LS         ++K
Sbjct: 158 VCDWTDYDERMKKLV-------SIVADQLEKNRLPSVHPHHSMLYPLS-------HGFRK 203

Query: 393 LRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVE 452
                       K   ++K                 V   + D+     +        ++
Sbjct: 204 AIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSH------LMQ 257

Query: 453 ANLPSVQLSALENMHYSHMIRFDNIEEARRLQHEIDKLKE--SKSEDLEAYDVARDCCSE 510
           +          E   Y+     D      ++  E +   +      + +A D        
Sbjct: 258 SIPGMHNPDKFEVFCYALS-PDDGTNFRVKVMAEANHFIDLSQIPCNGKAADRIHQDGIH 316

Query: 511 TDTEGNDHLPDVRSSACF----PAEMSKSDSGRSKTLAGLEEVEDDE---PLISFLRSSE 563
                N +    R+        P +        +     ++ +  D+   P     + SE
Sbjct: 317 ILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQETSPAEVAEQYSE 376

Query: 564 RLPKLKRAYVEKQNIPTEPRELTPKTLSKS 593
           +L  +   +        +   + P    K+
Sbjct: 377 KLAYMPHTF-----FIGDHANMFPHLKKKA 401

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 58.3 bits (140), Expect = 2e-08
 Identities = 42/244 (17%), Positives = 87/244 (35%), Gaps = 52/244 (21%)

Query: 32  NVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQ 91
           N + +I + +G   EA++     Y  +++  PE        +L  V  +    ++AL++ 
Sbjct: 13  NNLANIKREQGNIEEAVRL----YRKALEVFPEFAA--AHSNLASVLQQQGKLQEALMHY 66

Query: 92  VKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLK 151
            K+ + ++   +D      A + +G T  EM          ++ A + +  A+++     
Sbjct: 67  -KEAIRISPTFAD------AYSNMGNTLKEM--------QDVQGALQCYTRAIQI----- 106

Query: 152 ENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRL 211
            NPA         + DAH+N+  +  +  N+ EA       L++                
Sbjct: 107 -NPA---------FADAHSNLASIHKDSGNIPEAIASYRTALKL---------KPDFPDA 147

Query: 212 HHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILC 271
           + NL +    +  W    E         KK+     +      L  +H            
Sbjct: 148 YCNLAHCLQIVCDWTDYDER-------MKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHG 200

Query: 272 YQKA 275
           ++KA
Sbjct: 201 FRKA 204

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 62.9 bits (154), Expect = 2e-10
 Identities = 58/368 (15%), Positives = 124/368 (33%), Gaps = 83/368 (22%)

Query: 801  KRLMKLYIECCKELSEAPNMKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKTV 860
            + + KL +   K ++    ++ L  L      + + ++  ++ DIS    L  L      
Sbjct: 44   ESITKLVVAGEK-VASIQGIEYLTNL------EYLNLNGNQITDISPLSNLVKLTN---- 92

Query: 861  ALLDLSHNLLGN----GTMEKLQQFFISSCQ--------NYVDLT-LDLHCNRF--GPTT 905
              L +  N + +      +  L++ +++           N   +  L+L  N      + 
Sbjct: 93   --LYIGTNKITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSP 150

Query: 906  LFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKV 965
            L          T L  L ++ +++ D       T + N   LYSL++    I        
Sbjct: 151  LSN-------MTGLNYLTVTESKVKD------VTPIANLTDLYSLSLNYNQIED------ 191

Query: 966  ADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQL 1025
               L + ++L       N       IT++   +  +   + L +   K++   +  L  L
Sbjct: 192  ISPLASLTSLHYFTAYVNQ------ITDI-TPVANMTRLNSLKIGNNKITD--LSPLANL 242

Query: 1026 AKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLV 1085
            ++   LT L +G   +    +++ +  L         L++    +    I        L 
Sbjct: 243  SQ---LTWLEIGTNQISDINAVKDLTKL-------KMLNVGSNQISD--ISVLNNLSQLN 290

Query: 1086 HGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTL 1145
                 L L  N +  E    +  L       L  L LS+  +        I+ L+    +
Sbjct: 291  ----SLFLNNNQLGNEDMEVIGGL---TN--LTTLFLSQNHI------TDIRPLASLSKM 335

Query: 1146 EELNLADN 1153
            +  + A+ 
Sbjct: 336  DSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 55.2 bits (134), Expect = 6e-08
 Identities = 56/356 (15%), Positives = 112/356 (31%), Gaps = 81/356 (22%)

Query: 812  KELSEAPNMKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLG 871
             ++    ++    +  + +           + D+     L ++        L ++   + 
Sbjct: 13   NQIFPDADLAEGIRAVLQK---------ASVTDVVTQEELESITK------LVVAGEKVA 57

Query: 872  NGTMEKLQQFFISSCQNYVDLT-LDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLT 930
            +          I   +   +L  L+L+ N+   T +  +        +L  L +  N++T
Sbjct: 58   S----------IQGIEYLTNLEYLNLNGNQI--TDISPLSN----LVKLTNLYIGTNKIT 101

Query: 931  DACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNA 990
            D       + L+N   L  L +   +I+          L   + +  L +G N       
Sbjct: 102  DI------SALQNLTNLRELYLNEDNISD------ISPLANLTKMYSLNLGANH------ 143

Query: 991  ITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLV 1050
              + L  L  +   + L +   K+    V  +  L     L  L L    +     L  +
Sbjct: 144  NLSDLSPLSNMTGLNYLTVTESKVKD--VTPIANLTD---LYSLSLNYNQIEDISPLASL 198

Query: 1051 ESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLL 1110
             SL                +    I        L      L +G N I     + LA+L 
Sbjct: 199  TSL-------HYFTAYVNQITD--ITPVANMTRLN----SLKIGNNKI--TDLSPLANLS 243

Query: 1111 MNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKELTLQQNLSS 1166
                  L  L +   Q+        I A+ +   L+ LN+  N   ++++  NLS 
Sbjct: 244  Q-----LTWLEIGTNQI------SDINAVKDLTKLKMLNVGSNQISDISVLNNLSQ 288

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.3 bits (103), Expect = 4e-04
 Identities = 41/258 (15%), Positives = 80/258 (31%), Gaps = 49/258 (18%)

Query: 916  FTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTL 975
                    L    +TD     + T  +  + +  L +    + S         +   + L
Sbjct: 21   LAEGIRAVLQKASVTD-----VVT-QEELESITKLVVAGEKVASI------QGIEYLTNL 68

Query: 976  AQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLM 1035
              L +  N       IT++   L  L   + L +   K++      L  L     L  L 
Sbjct: 69   EYLNLNGNQ------ITDISP-LSNLVKLTNLYIGTNKITDI--SALQNLTN---LRELY 116

Query: 1036 LGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGG 1095
            L   N+     L  +  +         L+L      S  +   +    L      L +  
Sbjct: 117  LNEDNISDISPLANLTKM-------YSLNLGANHNLSD-LSPLSNMTGLN----YLTVTE 164

Query: 1096 NPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNAS 1155
            + +  +    +A+L       L  L L+  Q+      + I  L+   +L       N  
Sbjct: 165  SKV--KDVTPIANLTD-----LYSLSLNYNQI------EDISPLASLTSLHYFTAYVNQI 211

Query: 1156 KELTLQQNLSSVNSENLQ 1173
             ++T   N++ +NS  + 
Sbjct: 212  TDITPVANMTRLNSLKIG 229

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.5 bits (101), Expect = 7e-04
 Identities = 35/173 (20%), Positives = 57/173 (32%), Gaps = 40/173 (23%)

Query: 801 KRLMKLYIECCK--ELSEAPNMKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHK 858
             L        +  +++   NM  L  L I            ++ D+S    L+ L    
Sbjct: 199 TSLHYFTAYVNQITDITPVANMTRLNSLKIGN---------NKITDLSPLANLSQLTW-- 247

Query: 859 TVALLDLSHNLLGN----GTMEKLQQFFISSCQ--------NYVDLT-LDLHCNRFGPTT 905
               L++  N + +      + KL+   + S Q        N   L  L L+ N+ G   
Sbjct: 248 ----LEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNED 303

Query: 906 LFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSIT 958
           +  I       T L  L LS N +TD         L +   + S +  N  I 
Sbjct: 304 MEVIGGL----TNLTTLFLSQNHITD------IRPLASLSKMDSADFANQVIK 346

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 63.0 bits (152), Expect = 2e-10
 Identities = 38/211 (18%), Positives = 75/211 (35%), Gaps = 15/211 (7%)

Query: 947  LYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSE 1006
               ++ E   I+      ++  L A   L  L I        N ++        LKS   
Sbjct: 146  WGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKI-----KGTNNLSIGKKPRPNLKS--- 197

Query: 1007 LNLNGLKLSKPVVDRLCQLAKTSCLTHLML--GCTNLGSDGSLQLVESLFSRAQES--VK 1062
            L +    L   VV+ +   +    L  L+L  G  + G DG + +   LFS+ +      
Sbjct: 198  LEIISGGLPDSVVEDILG-SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKW 256

Query: 1063 LDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVL 1122
            L +     ++  +  F     ++  +  +++    +  EGA  L   + +    LK + +
Sbjct: 257  LGIVDAEEQNVVVEMF-LESDILPQLETMDISAGVLTDEGARLLLDHV-DKIKHLKFINM 314

Query: 1123 SKCQLGLAGVLQLIKALSENDTLEELNLADN 1153
                L      +L K+L     + +    D+
Sbjct: 315  KYNYLSDEMKKELQKSLPMKIDVSDSQEYDD 345

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 58.4 bits (140), Expect = 6e-09
 Identities = 31/180 (17%), Positives = 64/180 (35%), Gaps = 15/180 (8%)

Query: 801 KRLMKLYIECCKELSEAPNMKL-LKKLYISEVEDEVIVSECELQDISVTPLLNALHTH-K 858
             L  L I+    LS     +  LK L          +    L D  V  +L +   + +
Sbjct: 172 PLLNNLKIKGTNNLSIGKKPRPNLKSL---------EIISGGLPDSVVEDILGSDLPNLE 222

Query: 859 TVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLT-LDLHCNRFGPTTLFQICECPVLFT 917
            + L     +   +G M   +  F  S   + +L  L +         +    E  +L  
Sbjct: 223 KLVLYVGVEDYGFDGDMNVFRPLF--SKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL-P 279

Query: 918 RLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQ 977
           +L  +++S   LTD     L   +   K L  +N++   ++    +++  +L  +  ++ 
Sbjct: 280 QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSD 339

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.8 bits (153), Expect = 5e-10
 Identities = 66/373 (17%), Positives = 108/373 (28%), Gaps = 48/373 (12%)

Query: 915  LFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAEST 974
            L      L+LS N L        S    +   L  L++  C I +  I+      GA  +
Sbjct: 26   LPFSTKNLDLSFNPLR----HLGSYSFFSFPELQVLDLSRCEIQT--IED-----GAYQS 74

Query: 975  LAQLCIGYNSPVTGNAITNLLVK-LDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTH 1033
            L+ L       +TGN I +L +     L S  +L      L+      +  L     L  
Sbjct: 75   LSHLSTLI---LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT---LKE 128

Query: 1034 LMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNL 1093
            L +    + S      +   FS       LDLS   ++S           +    L L+L
Sbjct: 129  LNVAHNLIQSFK----LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 1094 GGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADN 1153
              NP+      A   +       L  L L      L  +   I+ L+    LE   L   
Sbjct: 185  SLNPMNFIQPGAFKEIR------LHKLTLRNNFDSLNVMKTCIQGLAG---LEVHRLVLG 235

Query: 1154 ASKELTLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKI 1213
              +     +       E L   L   +     +D     +  +     ++         I
Sbjct: 236  EFRNEGNLEKFDKSALEGLCN-LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

Query: 1214 RVESAASGFDNSCTSSCQKNSSFECQFVQ---------------ELSSAIGMAKPLQLLD 1258
                  S                +   ++                  S + +   L+ LD
Sbjct: 295  ERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS-LEFLD 353

Query: 1259 LSNNGFSTQAVKT 1271
            LS NG S +   +
Sbjct: 354  LSRNGLSFKGCCS 366

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.5 bits (134), Expect = 1e-07
 Identities = 56/367 (15%), Positives = 111/367 (30%), Gaps = 65/367 (17%)

Query: 819  NMKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLL-----GNG 873
            N+  L+ L +S           ++Q I  T L            LDLS N +     G  
Sbjct: 147  NLTNLEHLDLSS---------NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

Query: 874  TMEKLQQFFISSCQNYVDLT------------LDLHCNRFGPTTLFQICECPVLFTRLGV 921
               +L +  + +  + +++               L    F      +  +       L  
Sbjct: 198  KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA-LEGLCN 256

Query: 922  LNLSGNRLT--DACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLC 979
            L +   RL   D     +  +      + S ++ + +I                    L 
Sbjct: 257  LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER------VKDFSYNFGWQHLE 310

Query: 980  IGYNS--PVTGNAITNLLV------KLDTLKSFSEL-NLNGLKLSKPVVDRLCQLAKTSC 1030
            +            + +L        K     S  +L +L  L LS+        L+   C
Sbjct: 311  LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSR------NGLSFKGC 364

Query: 1031 LTHLMLGCTNLG----SDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVH 1086
             +    G T+L     S   +  + S F   ++   LD  +  L+   + +F+  +SL +
Sbjct: 365  CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ--MSEFSVFLSLRN 422

Query: 1087 GILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLE 1146
             ++ L++               L       L+VL ++        +  +   L     L 
Sbjct: 423  -LIYLDISHTHTRVAFNGIFNGLSS-----LEVLKMAGNSFQENFLPDIFTELR---NLT 473

Query: 1147 ELNLADN 1153
             L+L+  
Sbjct: 474  FLDLSQC 480

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.4 bits (126), Expect = 7e-07
 Identities = 70/428 (16%), Positives = 121/428 (28%), Gaps = 74/428 (17%)

Query: 863  LDLSHNLLGNGTMEKLQQFFISSCQNYVDLT-LDLHCNRFG--PTTLFQICECPVLFTRL 919
            LDLS N         L+     S  ++ +L  LDL            +Q        + L
Sbjct: 33   LDLSFN--------PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ------SLSHL 78

Query: 920  GVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLC 979
              L L+GN +     S           L  L     ++ S  ++     +G   TL +L 
Sbjct: 79   STLILTGNPIQ----SLALGAFSGLSSLQKLVAVETNLAS--LE--NFPIGHLKTLKELN 130

Query: 980  IGYNSPVTGNAITNLLV--KLDTLKSFSELNL--NGLK-LSKPVVDRLCQLAKTSCLTHL 1034
            + +N       I +  +      L +   L+L  N ++ +    +  L Q+        L
Sbjct: 131  VAHNL------IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM--PLLNLSL 182

Query: 1035 MLGCTNLGS--DGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELN 1092
             L    +     G+ + +  L        KL L         +      ++ +  +  L 
Sbjct: 183  DLSLNPMNFIQPGAFKEI-RL-------HKLTLRNNFDSLNVMKTCIQGLAGLE-VHRLV 233

Query: 1093 LGGNPIMKEGANALASL---LMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELN 1149
            LG           L       +   C L +       L       +I   +    +   +
Sbjct: 234  LGEF----RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL-DDIIDLFNCLTNVSSFS 288

Query: 1150 LADN-------ASKELTLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCND 1202
            L           S     Q            P LK          +++ G      D   
Sbjct: 289  LVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS 348

Query: 1203 LEVADSEDDKIRVESAASGFDNSCTS----SCQKNSSFECQFVQELSSAIGMAKPLQLLD 1258
            LE  D   + +  +   S  D   TS        N       V  +SS     + L+ LD
Sbjct: 349  LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG------VITMSSNFLGLEQLEHLD 402

Query: 1259 LSNNGFST 1266
              ++    
Sbjct: 403  FQHSNLKQ 410

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.1 bits (107), Expect = 2e-04
 Identities = 48/295 (16%), Positives = 85/295 (28%), Gaps = 67/295 (22%)

Query: 812  KELSEAPNMKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLG 871
            + + +       + L +            +   +     L +L        L  + N  G
Sbjct: 295  ERVKDFSYNFGWQHLELVNC------KFGQFPTLK----LKSLKR------LTFTSNKGG 338

Query: 872  N----GTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLF---TRLGVLNL 924
            N      +  L+              LDL  N      L     C       T L  L+L
Sbjct: 339  NAFSEVDLPSLE-------------FLDLSRNG-----LSFKGCCSQSDFGTTSLKYLDL 380

Query: 925  SGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNS 984
            S N +       +S+     + L  L+ ++ ++   +   V  +L     L  L I +  
Sbjct: 381  SFNGVIT-----MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL---RNLIYLDISHTH 432

Query: 985  PVTGNAITNLLV-KLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGS 1043
                           + L S   L + G    +  +  +    +   LT L L    L  
Sbjct: 433  ------TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI--FTELRNLTFLDLSQCQLEQ 484

Query: 1044 DGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPI 1098
                 L  + F+       L+++   L+S     F    SL      + L  NP 
Sbjct: 485  -----LSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK----IWLHTNPW 530

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 62.6 bits (152), Expect = 6e-10
 Identities = 54/304 (17%), Positives = 93/304 (30%), Gaps = 54/304 (17%)

Query: 863  LDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVL 922
            + L   ++ +  +E + +    S +N+  L L   C  F    L  I         L  L
Sbjct: 110  IRLKRMVVTDDCLELIAK----SFKNFKVLVLS-SCEGFSTDGLAAIAAT---CRNLKEL 161

Query: 923  NLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGY 982
            +L  + + D  G +LS        L SLNI   +                          
Sbjct: 162  DLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-------------------------- 195

Query: 983  NSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLG-CTNL 1041
             S V+ +A+  L+ +   LK    L LN    + P+      L +   L  L  G  T  
Sbjct: 196  -SEVSFSALERLVTRCPNLK---SLKLNR---AVPLEKLATLLQRAPQLEELGTGGYTAE 248

Query: 1042 GSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKE 1101
                    +    S  +E   L   +  + +     ++    L      LNL    +   
Sbjct: 249  VRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTT----LNLSYATVQSY 304

Query: 1102 GANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKELTLQ 1161
                L          L+ L +    +  AG+  L     +   L EL +  +    +   
Sbjct: 305  DLVKLLCQCPK----LQRLWVLDY-IEDAGLEVLASTCKD---LRELRVFPSEPFVMEPN 356

Query: 1162 QNLS 1165
              L+
Sbjct: 357  VALT 360

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 61.1 bits (148), Expect = 2e-09
 Identities = 54/376 (14%), Positives = 113/376 (30%), Gaps = 66/376 (17%)

Query: 801  KRLMKLYIECCKELSE-------APNMKLLKKLYISE-VEDEVIVSECE----LQDISVT 848
              L+ L I C                   LK L ++  V  E + +  +    L+++   
Sbjct: 184  TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243

Query: 849  PLLNALHTHKTVALLDLSHNLL--------GNGTMEKLQQFFISSCQNYVDLT-LDLHCN 899
                 +       L                 +     L   + S C     LT L+L   
Sbjct: 244  GYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVY-SVCSR---LTTLNLSYA 299

Query: 900  RFGPTTLFQI-CECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENC-SI 957
                  L ++ C+CP    +L  L +  + + DA    L  +   CK L  L +      
Sbjct: 300  TVQSYDLVKLLCQCP----KLQRLWVL-DYIEDAG---LEVLASTCKDLRELRVFPSEPF 351

Query: 958  TSRTIQKVADALGAESTLAQLC------IGYNSPVTGNAITNLLVKLDTLKSFSELNLNG 1011
                   + +      +++  C      + +   +T  A+  +      +       L  
Sbjct: 352  VMEPNVALTEQ--GLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMT---RFRLCI 406

Query: 1012 LKLSKPVVDRLCQLAKTSCLTHLMLGCTNLG--------SDGSLQLVESLFSRAQESVKL 1063
            ++   P  D L           ++  C +L         +D   + + +   + +    L
Sbjct: 407  IEPKAP--DYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEM---L 461

Query: 1064 DLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLS 1123
             +++ G     +H   +       + +L +   P   +   A AS L      ++ L +S
Sbjct: 462  SVAFAGDSDLGMHHVLSGC---DSLRKLEIRDCPFGDKALLANASKLET----MRSLWMS 514

Query: 1124 KCQLGLAGVLQLIKAL 1139
             C +       L + +
Sbjct: 515  SCSVSFGACKLLGQKM 530

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 45.3 bits (107), Expect = 1e-04
 Identities = 37/208 (17%), Positives = 73/208 (35%), Gaps = 17/208 (8%)

Query: 801  KRLMKLYIECCKELSEAPNMKL----LKKLYISEVEDEVIVSEC-ELQDISVTPLLNALH 855
            K L +L +   +     PN+ L    L  + +   + E ++  C ++ + ++  +     
Sbjct: 338  KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRP 397

Query: 856  THKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLT-LDLHCNRFGPTTLFQICECPV 914
                  L  +        T+E L   F +  ++  DL  L L            I     
Sbjct: 398  NMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL-SGLLTDKVFEYIGTY-- 454

Query: 915  LFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAEST 974
               ++ +L+++    +D     +  +L  C  L  L I +C    + +   A  L    T
Sbjct: 455  -AKKMEMLSVAFAGDSDLG---MHHVLSGCDSLRKLEIRDCPFGDKALLANASKL---ET 507

Query: 975  LAQLCIGYNSPVTGNAITNLLVKLDTLK 1002
            +  L +   S V+  A   L  K+  L 
Sbjct: 508  MRSLWMSSCS-VSFGACKLLGQKMPKLN 534

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 59.3 bits (144), Expect = 7e-10
 Identities = 27/177 (15%), Positives = 66/177 (37%), Gaps = 35/177 (19%)

Query: 137 KKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEIC 196
           KK +K A+     +++  +               NIG +   L N+ EA+K   R +   
Sbjct: 19  KKDWKGALDAFSAVQDPHS-----------RICFNIGCMYTILKNMTEAEKAFTRSINRD 67

Query: 197 NEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKK----------IEHCQ 246
               V+         +   G +Y +   +D + + +++ +I  +           ++   
Sbjct: 68  KHLAVA---------YFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKL 118

Query: 247 GEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAI 303
              +   N+  ++ + +++ +A      A ++    E   +   +ID+ +E V K  
Sbjct: 119 FACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS--EPRHS---KIDKAMECVWKQK 170

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 57.4 bits (139), Expect = 4e-09
 Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 19/117 (16%)

Query: 162 LKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYME 221
           L E I +  N G+L  +  + + A               V +     SR+  N+G +Y  
Sbjct: 3   LVEAI-SLWNEGVLAADKKDWKGALDAF---------SAVQDPH---SRICFNIGCMYTI 49

Query: 222 LRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNL 278
           L+   ++ +   + I   K +      A  Y   G L+Y+ +KYD AI   ++AL  
Sbjct: 50  LKNMTEAEKAFTRSINRDKHL------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQ 100

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 19/129 (14%), Positives = 40/129 (31%), Gaps = 20/129 (15%)

Query: 182 LEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKK 241
           ++   + L   L                 L   LG  Y E   +D +  H+         
Sbjct: 1   MQAITERLEAMLAQ---------GTDNMLLRFTLGKTYAEHEQFDAALPHLR------AA 45

Query: 242 IEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKK 301
           ++     +  +  LG+          A   ++  L  AQS  D+  +     + ++   +
Sbjct: 46  LDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVV-----KELQVFLR 100

Query: 302 AIEVMDELK 310
            +   D L+
Sbjct: 101 RLAREDALE 109

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 15/107 (14%), Positives = 28/107 (26%), Gaps = 13/107 (12%)

Query: 167 DAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWD 226
                +G    E +  + A   L   L+          D   S     LG          
Sbjct: 20  LLRFTLGKTYAEHEQFDAALPHLRAALDF---------DPTYSVAWKWLGKTLQGQGDRA 70

Query: 227 KSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQ 273
            +R+  E  +         +G+ +    L     R+ + D     + 
Sbjct: 71  GARQAWESGL----AAAQSRGDQQVVKELQVFLRRLAREDALEHHHH 113

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.8 bits (148), Expect = 2e-09
 Identities = 40/307 (13%), Positives = 95/307 (30%), Gaps = 54/307 (17%)

Query: 863  LDLSHNLLGNGTMEKLQQFFISSCQNYVDLT-LDLHCNRFG----PTTLFQICECPVLFT 917
            ++++ N   +G   K     ++       +  + +  N        T+L ++        
Sbjct: 278  INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKM-------K 330

Query: 918  RLGVLNLSGNRLTDACGSYLSTI--LKNCKVLYSLNIENCSITSRTIQKVADALGAESTL 975
            +LG+L    N+L          +    +   L SLN+    IT   I   A+  G    +
Sbjct: 331  KLGMLECLYNQLE-------GKLPAFGSEIKLASLNLAYNQITE--I--PANFCGFTEQV 379

Query: 976  AQLCIGYNSPVTGNAITNL--LVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSC--- 1030
              L   +N       +  +  +    ++   S ++ +  ++          L  T     
Sbjct: 380  ENLSFAHNK------LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433

Query: 1031 -LTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYC---GLESTCIHKFTASVSLVH 1086
             ++ + L    +         + LFS       ++L       +    +     +    +
Sbjct: 434  NVSSINLSNNQISK-----FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTY 488

Query: 1087 GILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLE 1146
             +  ++L  N + K   +  A+ L      L  + LS          +       + TL+
Sbjct: 489  LLTSIDLRFNKLTKLSDDFRATTLPY----LVGIDLSYNSFS-----KFPTQPLNSSTLK 539

Query: 1147 ELNLADN 1153
               + + 
Sbjct: 540  GFGIRNQ 546

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.1 bits (141), Expect = 2e-08
 Identities = 54/394 (13%), Positives = 118/394 (29%), Gaps = 103/394 (26%)

Query: 811  CKELSEAPNMKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLL 870
             + L++AP  + ++ +YI             L+   V   L  +   K + +L+  +N L
Sbjct: 295  WQALADAPVGEKIQIIYIGY---------NNLKTFPVETSLQKM---KKLGMLECLYNQL 342

Query: 871  GN-----GTMEKLQQFFISS----------CQNYVDLT-LDLHCNRFGPTTL---FQICE 911
                   G+  KL    ++           C     +  L    N+     +   F    
Sbjct: 343  EGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL--KYIPNIFDAKS 400

Query: 912  CPVLFTRLGVLNLSGNRLTDACGSYLSTI---LKNCKVLYSLNIENCSITSRTIQKVADA 968
                 + +  ++ S N +    G     +         + S+N+ N  I+        + 
Sbjct: 401  V----SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKF----PKEL 452

Query: 969  LGAESTLAQLCIGYN--SPVTGNAITNLLVKLDTLKSFSELNLNGLKLSK-PVVDRLCQL 1025
                S L+ + +  N  + +  N++ +           + ++L   KL+K     R   L
Sbjct: 453  FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTL 512

Query: 1026 AKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLES--TCIHKFTASVS 1083
                           L                   V +DLSY       T     +    
Sbjct: 513  -------------PYL-------------------VGIDLSYNSFSKFPTQPLNSSTLKG 540

Query: 1084 LVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSEND 1143
                  + +  GN  ++E    +          L  L +    +      ++ + ++ N 
Sbjct: 541  FGIR-NQRDAQGNRTLREWPEGITLCPS-----LTQLQIGSNDIR-----KVNEKITPN- 588

Query: 1144 TLEELNLADNASKELTLQQNLSSVNSENLQPALK 1177
             +  L++ DN            S++   + P ++
Sbjct: 589  -ISVLDIKDN---------PNISIDLSYVCPYIE 612

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.9 bits (130), Expect = 3e-07
 Identities = 45/351 (12%), Positives = 105/351 (29%), Gaps = 67/351 (19%)

Query: 862  LLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFG--PTTLFQICECPVLFTRL 919
              DL  + + +   +K  +          D  +    N        + ++       T+L
Sbjct: 158  FSDLIKDCINSDPQQKSIKKSSRITLK--DTQIGQLSNNITFVSKAVMRL-------TKL 208

Query: 920  GVLNLSGNRLTD--ACGSYLSTILKNCKVLYSLNIENCSITSRT---------IQKVADA 968
                +  +       C ++ +   +  +   + +++  ++   T         + K+   
Sbjct: 209  RQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF 268

Query: 969  LGAESTLAQLCIGYNSPVTGNAITNLLVKL---DTLKSFSELNLNGLKLSK-PVVDRLCQ 1024
            L A   +  + +  N  ++G  + +    L      +    + +    L   PV   L +
Sbjct: 269  LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK 328

Query: 1025 LAKTSCLTHLMLGCTNL-------GSDGSLQ-----------LVESLFSRAQESVKLDLS 1066
            + K   L  L      L       GS+  L            +  +     ++   L  +
Sbjct: 329  MKK---LGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA 385

Query: 1067 YCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCC--LKVLVLSK 1124
            +  L+   I     + S+   +  ++   N I          L   P     +  + LS 
Sbjct: 386  HNKLKY--IPNIFDAKSVSV-MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSN 442

Query: 1125 CQLGLAGVLQLIKALSENDT-LEELNLADNASKELTLQQNLSSVNSENLQP 1174
             Q+      +  K L    + L  +NL  N          L+ +   +L+ 
Sbjct: 443  NQIS-----KFPKELFSTGSPLSSINLMGN---------MLTEIPKNSLKD 479

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.4 bits (147), Expect = 2e-09
 Identities = 73/380 (19%), Positives = 132/380 (34%), Gaps = 85/380 (22%)

Query: 801  KRLMKLYIECCKELSEAPNMKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKTV 860
              L ++     + L++   +K L KL       +++++  ++ DI+    L  L      
Sbjct: 68   NNLTQINFSNNQ-LTDITPLKNLTKL------VDILMNNNQIADITPLANLTNLTG---- 116

Query: 861  ALLDLSHNLLGN----GTMEKLQQFFISSCQ--------NYVDLT-LDLHCNRFGPTTLF 907
              L L +N + +      +  L +  +SS              L  L           L 
Sbjct: 117  --LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLA 174

Query: 908  QICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVAD 967
                     T L  L++S N+++D     +S  L     L SL   N  I+         
Sbjct: 175  N-------LTTLERLDISSNKVSD-----ISV-LAKLTNLESLIATNNQISD------IT 215

Query: 968  ALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSEL-NLNGLKLSKPVVDRLCQLA 1026
             LG  + L +L +  N             +L  + + + L NL  L L+   +  L  L+
Sbjct: 216  PLGILTNLDELSLNGN-------------QLKDIGTLASLTNLTDLDLANNQISNLAPLS 262

Query: 1027 KTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVH 1086
              + LT L LG   + +   L  + +L         L+L+   LE   I   +   +L  
Sbjct: 263  GLTKLTELKLGANQISNISPLAGLTAL-------TNLELNENQLED--ISPISNLKNLT- 312

Query: 1087 GILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLE 1146
                L L  N I     + ++SL       L+ L     ++        + +L+    + 
Sbjct: 313  ---YLTLYFNNI--SDISPVSSLTK-----LQRLFFYNNKV------SDVSSLANLTNIN 356

Query: 1147 ELNLADNASKELTLQQNLSS 1166
             L+   N   +LT   NL+ 
Sbjct: 357  WLSAGHNQISDLTPLANLTR 376

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.4 bits (147), Expect = 2e-09
 Identities = 79/461 (17%), Positives = 155/461 (33%), Gaps = 105/461 (22%)

Query: 737  DIESLKVELACLYYLQLPKEKISKGLLPIIQHMKYGGRSLESFDAFKDQLGKDIIEVSID 796
            D  S   +L  +  LQ  +  I    +  ++++     +L   +   +QL  DI  +   
Sbjct: 38   DTVSQT-DLDQVTTLQADRLGIKS--IDGVEYLN----NLTQINFSNNQL-TDITPLK-- 87

Query: 797  GWVQKRLMKLYIECCK--ELSEAPNMKLLKKLYISEVEDEVIVSECELQDISVTPLLNAL 854
                 +L+ + +   +  +++   N+  L  L +            ++ DI     L  L
Sbjct: 88   --NLTKLVDILMNNNQIADITPLANLTNLTGLTLFN---------NQITDIDPLKNLTNL 136

Query: 855  HTHKTVALLDLSHNLLGN----GTMEKLQQFFISSCQ-------NYVDLT-LDLHCNRFG 902
            +       L+LS N + +      +  LQQ    +         N   L  LD+  N+  
Sbjct: 137  NR------LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV- 189

Query: 903  PTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTI 962
             + +  + +     T L  L  + N+++D       T L     L  L++    +     
Sbjct: 190  -SDISVLAKL----TNLESLIATNNQISD------ITPLGILTNLDELSLNGNQLKD--- 235

Query: 963  QKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRL 1022
                  L + + L  L +  N       I+NL   L  L   +EL L   ++S   +  L
Sbjct: 236  ---IGTLASLTNLTDLDLANNQ------ISNL-APLSGLTKLTELKLGANQISN--ISPL 283

Query: 1023 CQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASV 1082
              L     LT+L L    L     +  +++L         L L +  +    I   ++  
Sbjct: 284  AGLTA---LTNLELNENQLEDISPISNLKNL-------TYLTLYFNNISD--ISPVSSLT 331

Query: 1083 SLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSEN 1142
             L      L    N +     ++LA+L       +  L     Q+        +  L+  
Sbjct: 332  KLQ----RLFFYNNKV--SDVSSLANLTN-----INWLSAGHNQI------SDLTPLANL 374

Query: 1143 DTLEELNLADN--------ASKELTLQQNLSSVNSENLQPA 1175
              + +L L D             +++   + +V    + PA
Sbjct: 375  TRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPA 415

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.8 bits (143), Expect = 7e-09
 Identities = 67/375 (17%), Positives = 123/375 (32%), Gaps = 85/375 (22%)

Query: 812  KELSEAPNMKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLG 871
             ++     +    K  + +      VS+ +L  ++                L      + 
Sbjct: 15   NQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTT---------------LQADRLGIK 59

Query: 872  N----GTMEKLQQFFISSCQ--------NYVDLT-LDLHCNRFGPTTLFQICECPVLFTR 918
            +      +  L Q   S+ Q        N   L  + ++ N+     +  +       T 
Sbjct: 60   SIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI--ADITPLANL----TN 113

Query: 919  LGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQL 978
            L  L L  N++TD         LKN   L  L + + +I+          + A S L  L
Sbjct: 114  LTGLTLFNNQITD------IDPLKNLTNLNRLELSSNTISD---------ISALSGLTSL 158

Query: 979  CIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGC 1038
                      N +T+L   L  L +   L+++  K+S      L +L     L  L+   
Sbjct: 159  QQLSFG----NQVTDLKP-LANLTTLERLDISSNKVSDI--SVLAKLTN---LESLIATN 208

Query: 1039 TNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPI 1098
              +     L ++ +L        +L L+   L+   I    +  +L     +L+L  N I
Sbjct: 209  NQISDITPLGILTNL-------DELSLNGNQLKD--IGTLASLTNLT----DLDLANNQI 255

Query: 1099 MKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKEL 1158
                   L+ L       L  L L   Q+        I  L+    L  L L +N  +++
Sbjct: 256  --SNLAPLSGLTK-----LTELKLGANQI------SNISPLAGLTALTNLELNENQLEDI 302

Query: 1159 TLQQNLSSVNSENLQ 1173
            +   NL ++    L 
Sbjct: 303  SPISNLKNLTYLTLY 317

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 58.5 bits (141), Expect = 4e-09
 Identities = 25/250 (10%), Positives = 70/250 (28%), Gaps = 30/250 (12%)

Query: 71  CQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDH 130
           C     +Y   +    A      K  +  K A +  E      +  + +       +   
Sbjct: 40  CVQAATIYRLRKELNLAGDS-FLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN--- 95

Query: 131 YSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIG-MLQMELDNLEEAKKFL 189
                A    ++A+++     +    +         +    +G +L+ +L +  +A    
Sbjct: 96  -----AVDSLENAIQIFTHRGQFRRGA---------NFKFELGEILENDLHDYAKAIDCY 141

Query: 190 IRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEA 249
               E   +++        ++      ++      + ++ +   + I         Q   
Sbjct: 142 ELAGEWYAQDQ---SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198

Query: 250 KGY-INLGELHYRVQKYDEAILCYQKALNLAQSMED--EDALASQI-----DQNIETVKK 301
           K Y +  G           A    Q+  +   +  D  E      +     + + E + +
Sbjct: 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSE 258

Query: 302 AIEVMDELKK 311
             +  D   +
Sbjct: 259 HCKEFDNFMR 268

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 50.0 bits (119), Expect = 2e-06
 Identities = 21/154 (13%), Positives = 49/154 (31%), Gaps = 12/154 (7%)

Query: 344 DRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWY 403
           ++    SS         +  K ++  A++LC +             Y+  ++ N A   +
Sbjct: 12  EKKGVPSSGFMKLFSGSDSYKFEE--AADLCVQ---------AATIYRLRKELNLAGDSF 60

Query: 404 TKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSAL 463
            K+ +  K  GN +      V       S G+   A+D+ +   +I           +  
Sbjct: 61  LKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFK 120

Query: 464 ENMHYSHMIRFDNIEEARRL-QHEIDKLKESKSE 496
             +         +  +A    +   +   + +S 
Sbjct: 121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 49.2 bits (117), Expect = 4e-06
 Identities = 23/238 (9%), Positives = 54/238 (22%), Gaps = 55/238 (23%)

Query: 211 LHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAIL 270
           L      +Y   +  + + +   +     KK  +       Y+   +          A+ 
Sbjct: 39  LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVD 98

Query: 271 CYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTS 330
             + A+ +          A                            +L   +       
Sbjct: 99  SLENAIQIFTHRGQFRRGA------------------------NFKFELGEILENDLHDY 134

Query: 331 QERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESY 390
            +     +         +  ++                           +  F+   +  
Sbjct: 135 AKAIDCYELAGEWYAQDQSVALS--------------------------NKCFIKCADLK 168

Query: 391 QKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAK---VNMGNVLDSNGDWAGALDAFQE 445
               ++ +A   Y+K   +  S+GN   Q   K   +  G    +  D   A    QE
Sbjct: 169 ALDGQYIEASDIYSK--LIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE 224

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 44.6 bits (105), Expect = 1e-04
 Identities = 21/194 (10%), Positives = 61/194 (31%), Gaps = 32/194 (16%)

Query: 263 QKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRN 322
            K++EA     +A  + +       L  +++   ++  KA +   +   E++        
Sbjct: 31  YKFEEAADLCVQAATIYR-------LRKELNLAGDSFLKAADYQKKAGNEDE-------- 75

Query: 323 MIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDS 382
                         ++            + + +     +    + +         + ++ 
Sbjct: 76  ---------AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFR-------RGANF 119

Query: 383 FLVIGESY-QKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALD 441
              +GE     L  + KAI  Y  + E Y    ++       +   ++   +G +  A D
Sbjct: 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASD 179

Query: 442 AFQEGYRIAVEANL 455
            + +  + ++   L
Sbjct: 180 IYSKLIKSSMGNRL 193

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 56.4 bits (136), Expect = 7e-09
 Identities = 18/133 (13%), Positives = 46/133 (34%), Gaps = 6/133 (4%)

Query: 1025 LAKTSCLTHLML-GCTNLGSDGSLQLVESLFSRAQESVK-LDLSYCGLESTCIHKFTASV 1082
                + L  + +     +  +    L+E+      + ++   L+   +  +        +
Sbjct: 37   REDDTDLKEVNINNMKRVSKERIRSLIEAA--CNSKHIEKFSLANTAISDSEARGLIELI 94

Query: 1083 SLVHGILELNLGGNPIMKEGANALA-SLLMNPQ-CCLKVLVLSKCQLGLAGVLQLIKALS 1140
                 +  LN+  N +  E    L  S L+       K     +  LG    + ++ A+ 
Sbjct: 95   ETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIE 154

Query: 1141 ENDTLEELNLADN 1153
            EN++L  + ++  
Sbjct: 155  ENESLLRVGISFA 167

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 16/128 (12%), Positives = 52/128 (40%), Gaps = 4/128 (3%)

Query: 887  QNYVDLT-LDL-HCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNC 944
            ++  DL  +++ +  R     +  + E       +   +L+   ++D+    L  +++  
Sbjct: 38   EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETS 97

Query: 945  KVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSP-VTGNAITNLLVK-LDTLK 1002
              L  LN+E+  +T   + ++  +     ++ +         V GN +   ++  ++  +
Sbjct: 98   PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENE 157

Query: 1003 SFSELNLN 1010
            S   + ++
Sbjct: 158  SLLRVGIS 165

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 54.5 bits (131), Expect = 2e-08
 Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 1/71 (1%)

Query: 1088 ILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEE 1147
            I + +L    I    A  L  L+      L+VL +    L    + +L+++     ++ E
Sbjct: 72   IEKFSLANTAISDSEARGLIELIET-SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVE 130

Query: 1148 LNLADNASKEL 1158
                +     L
Sbjct: 131  FKADNQRQSVL 141

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 21/152 (13%), Positives = 52/152 (34%), Gaps = 3/152 (1%)

Query: 862  LLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGV 921
            L +++ N +   + E+++    ++C +       L       +    + E       L V
Sbjct: 43   LKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRV 102

Query: 922  LNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITS---RTIQKVADALGAESTLAQL 978
            LN+  N LT    + L       + +     +N   +    +    +  A+    +L ++
Sbjct: 103  LNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRV 162

Query: 979  CIGYNSPVTGNAITNLLVKLDTLKSFSELNLN 1010
             I + S    + ++  L +         L  +
Sbjct: 163  GISFASMEARHRVSEALERNYERVRLRRLGKD 194

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 53.4 bits (129), Expect = 7e-09
 Identities = 16/99 (16%), Positives = 40/99 (40%), Gaps = 11/99 (11%)

Query: 209 SRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEA 268
               + L   +++     ++    E      + +E        Y +LG+L+ R+ + D+A
Sbjct: 7   PFTRYALAQEHLKHDNASRALALFE------ELVETDPDYVGTYYHLGKLYERLDRTDDA 60

Query: 269 ILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMD 307
           I  Y + + +A+    +  L+      ++  K   E ++
Sbjct: 61  IDTYAQGIEVAREEGTQKDLS-----ELQDAKLKAEGLE 94

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 16/106 (15%), Positives = 33/106 (31%), Gaps = 13/106 (12%)

Query: 164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELR 223
           E       +    ++ DN   A       +E          D      +++LG +Y  L 
Sbjct: 5   EDPFTRYALAQEHLKHDNASRALALFEELVET---------DPDYVGTYYHLGKLYERLD 55

Query: 224 MWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAI 269
             D + +   Q I    ++   +G  K    L +   + +  +   
Sbjct: 56  RTDDAIDTYAQGI----EVAREEGTQKDLSELQDAKLKAEGLEHHH 97

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 14/96 (14%), Positives = 35/96 (36%), Gaps = 22/96 (22%)

Query: 136 AKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEI 195
           A   F+  ++       +P         +Y+  + ++G L   LD  ++A     +G+E+
Sbjct: 26  ALALFEELVET------DP---------DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70

Query: 196 CNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREH 231
                    ++G  +    L +  ++    +    H
Sbjct: 71  -------AREEGTQKDLSELQDAKLKAEGLEHHHHH 99

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.9 bits (143), Expect = 8e-09
 Identities = 54/295 (18%), Positives = 90/295 (30%), Gaps = 45/295 (15%)

Query: 863  LDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFG--PTTLFQICECPVLFTRLG 920
                         E +              +++L  + F    +  F        F+ L 
Sbjct: 233  GTFEDMDD-----EDISPAVFEGLCEMSVESINLQKHYFFNISSNTFH------CFSGLQ 281

Query: 921  VLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCI 980
             L+L+   L+      L + L     L  L +      +        +     +L  L I
Sbjct: 282  ELDLTATHLS-----ELPSGLVGLSTLKKLVLSANKFENLC----QISASNFPSLTHLSI 332

Query: 981  GYNSPVTGNAITNLLVKLDTLKSFSELNL--NGLKLSKPVVDRLCQLAKTSCLTHLMLGC 1038
              N+       T  L  L+ L+   EL+L  + ++ S     +L  L+    L  L L  
Sbjct: 333  KGNTKRL-ELGTGCLENLENLR---ELDLSHDDIETSDCCNLQLRNLSH---LQSLNLSY 385

Query: 1039 TNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPI 1098
                S     L    F    +   LDL++  L        +   +L H +  LNL  + +
Sbjct: 386  NEPLS-----LKTEAFKECPQLELLDLAFTRL--KVKDAQSPFQNL-HLLKVLNLSHSLL 437

Query: 1099 MKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADN 1153
                      L   P   L+ L L        G +Q   +L     LE L L+  
Sbjct: 438  DISSEQLFDGL---PA--LQHLNLQGNHFP-KGNIQKTNSLQTLGRLEILVLSFC 486

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.9 bits (138), Expect = 4e-08
 Identities = 56/370 (15%), Positives = 102/370 (27%), Gaps = 56/370 (15%)

Query: 819  NMKLLKKLY-----ISEVEDEVIVSECELQDISV-------TPLLNALHTHKTVALLDLS 866
              + LK L      I  +  E + S  +  ++S+         +            L+  
Sbjct: 151  PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFG 210

Query: 867  HNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSG 926
                     + L+   I S                    +       +    +  +NL  
Sbjct: 211  GTQNLLVIFKGLKNSTIQSLW-----LGTFEDMDD--EDISPAVFEGLCEMSVESINLQK 263

Query: 927  NRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYN--S 984
            +       +  S        L  L++    ++      +   L   STL +L +  N   
Sbjct: 264  HYFF----NISSNTFHCFSGLQELDLTATHLSE-----LPSGLVGLSTLKKLVLSANKFE 314

Query: 985  PVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSD 1044
             +   + +N         S + L++ G      +      L     L  L L   ++ + 
Sbjct: 315  NLCQISASNF-------PSLTHLSIKGNTKRLELGTGC--LENLENLRELDLSHDDIET- 364

Query: 1045 GSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGAN 1104
                              L+LSY    S     F     L      L+L    +  + A 
Sbjct: 365  --SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL----LDLAFTRLKVKDAQ 418

Query: 1105 ALASLLMNPQCCLKVLVLSKCQL-GLAGVLQLIKALSENDTLEELNLADNASKELTLQQN 1163
            +    L      LKVL LS   L   +      +       L+ LNL  N   +  +Q+ 
Sbjct: 419  SPFQNLHL----LKVLNLSHSLLDISS-----EQLFDGLPALQHLNLQGNHFPKGNIQKT 469

Query: 1164 LSSVNSENLQ 1173
             S      L+
Sbjct: 470  NSLQTLGRLE 479

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.2 bits (136), Expect = 5e-08
 Identities = 59/319 (18%), Positives = 96/319 (30%), Gaps = 73/319 (22%)

Query: 863  LDLSHNLLGNGTMEKLQQFFISSCQNYVDLT-LDLHCNRFG--PTTLFQICECPVLFTRL 919
            L+ S N         L     ++    ++LT LDL   +        FQ         RL
Sbjct: 38   LEFSFN--------VLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQ------HRL 83

Query: 920  GVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLC 979
              L L+ N L         T L   K L  L      I+S  I      L  + TL  L 
Sbjct: 84   DTLVLTANPLIFM----AETALSGPKALKHLFFIQTGISS--ID--FIPLHNQKTLESLY 135

Query: 980  IGYNSPVTGNAITNLLVK-LDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGC 1038
            +G N       I+++ +      +    L+     +     + +  L +    T+L L  
Sbjct: 136  LGSNH------ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ---ATNLSL-- 184

Query: 1039 TNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIH--KFTASVSLVHG--------- 1087
             NL +   +  +E     +     L+              K +   SL  G         
Sbjct: 185  -NL-NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242

Query: 1088 -------------ILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQ 1134
                         +  +NL  +      +N            L+ L L+   L      +
Sbjct: 243  ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSG-----LQELDLTATHLS-----E 292

Query: 1135 LIKALSENDTLEELNLADN 1153
            L   L    TL++L L+ N
Sbjct: 293  LPSGLVGLSTLKKLVLSAN 311

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.2 bits (136), Expect = 5e-08
 Identities = 65/344 (18%), Positives = 101/344 (29%), Gaps = 69/344 (20%)

Query: 819  NMKLLKKLYISEVEDEVIVSECELQDISVTPL--LNALHTHKTVALLDLSHNLLGNGTME 876
              K LK L+  +           +  I   PL     L +      L L  N        
Sbjct: 103  GPKALKHLFFIQ---------TGISSIDFIPLHNQKTLES------LYLGSN-------- 139

Query: 877  KLQQFFISSCQNYVDL-TLDLHCNRFGPTTLFQICECPVLFTRLG-----VLNLSGNRLT 930
             +    +        L  LD   N      L          + L       LNL+GN + 
Sbjct: 140  HISSIKLPKGFPTEKLKVLDFQNNAI--HYL-----SKEDMSSLQQATNLSLNLNGNDIA 192

Query: 931  DACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNA 990
                  +     +  V  SLN           + +       ST+  L +G    +    
Sbjct: 193  G-----IEPGAFDSAVFQSLNFGGTQNLLVIFKGL-----KNSTIQSLWLGTFEDMDDED 242

Query: 991  ITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLV 1050
            I+  + +     S   +NL          +     +    L  L L      +   L  +
Sbjct: 243  ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSG---LQELDL------TATHLSEL 293

Query: 1051 ESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPI-MKEGANALASL 1109
             S         KL LS    E+ C    +   SL H    L++ GN   ++ G   L +L
Sbjct: 294  PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH----LSIKGNTKRLELGTGCLENL 349

Query: 1110 LMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADN 1153
                   L+ L LS   +  +    L   L     L+ LNL+ N
Sbjct: 350  EN-----LRELDLSHDDIETSDCCNL--QLRNLSHLQSLNLSYN 386

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.9 bits (130), Expect = 3e-07
 Identities = 61/298 (20%), Positives = 95/298 (31%), Gaps = 53/298 (17%)

Query: 863  LDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVL 922
            L LS N       E L Q   S+  +   L++     +        +         L  L
Sbjct: 306  LVLSANKF-----ENLCQISASNFPSLTHLSIK-GNTKRLELGTGCLENLE----NLREL 355

Query: 923  NLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGY 982
            +LS + +  +     +  L+N   L SLN+      S       +A      L  L + +
Sbjct: 356  DLSHDDIETS--DCCNLQLRNLSHLQSLNLSYNEPLSLK----TEAFKECPQLELLDLAF 409

Query: 983  NSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHL-----MLG 1037
               +      +    L  LK    LNL+   L          L     L HL        
Sbjct: 410  TR-LKVKDAQSPFQNLHLLK---VLNLSHSLLDISSEQLFDGLPA---LQHLNLQGNHFP 462

Query: 1038 CTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHK--FTASVSLVHGILELNLGG 1095
              N+    SLQ +  L         L LS+C L S  I +  FT+   + H    ++L  
Sbjct: 463  KGNIQKTNSLQTLGRLE-------ILVLSFCDLSS--IDQHAFTSLKMMNH----VDLSH 509

Query: 1096 NPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADN 1153
            N +      AL+ L          L L+     ++ +L     L        +NL  N
Sbjct: 510  NRLTSSSIEALSHLK------GIYLNLASNH--ISIILP--SLLPILSQQRTINLRQN 557

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.5 bits (116), Expect = 1e-05
 Identities = 43/250 (17%), Positives = 74/250 (29%), Gaps = 37/250 (14%)

Query: 913  PVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAE 972
              L      L  S N L     +  +T       L  L++  C I    I +  D   ++
Sbjct: 29   GTLPNSTECLEFSFNVLP----TIQNTTFSRLINLTFLDLTRCQIYW--IHE--DTFQSQ 80

Query: 973  STLAQLCIGYNSPVTGNAITNLLVK-LDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCL 1031
              L  L +  N       +  +    L   K+   L      +S      L        L
Sbjct: 81   HRLDTLVLTANP------LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT---L 131

Query: 1032 THLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILEL 1091
              L LG  ++ S     +        ++   LD     +        ++     +  L L
Sbjct: 132  ESLYLGSNHISS-----IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATN--LSL 184

Query: 1092 NLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSEND--TLEELN 1149
            NL GN I      A  S +       + L     Q     +L + K L  +   +L    
Sbjct: 185  NLNGNDIAGIEPGAFDSAV------FQSLNFGGTQN----LLVIFKGLKNSTIQSLWLGT 234

Query: 1150 LADNASKELT 1159
              D   ++++
Sbjct: 235  FEDMDDEDIS 244

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.2 bits (110), Expect = 7e-05
 Identities = 52/283 (18%), Positives = 84/283 (29%), Gaps = 49/283 (17%)

Query: 819  NMKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKL 878
            N   L  L I      + +    L++      L  L        LDLSH+ +        
Sbjct: 323  NFPSLTHLSIKGNTKRLELGTGCLEN------LENLRE------LDLSHDDI---ETSDC 367

Query: 879  QQFFISSCQNYVDLT-LDLHCNRFG--PTTLFQICECPVLFTRLGVLNLSGNRLTDACGS 935
                + +  +   L  L+L  N      T  F+ C       +L +L+L+  RL      
Sbjct: 368  CNLQLRNLSH---LQSLNLSYNEPLSLKTEAFKEC------PQLELLDLAFTRLK---VK 415

Query: 936  YLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLL 995
               +  +N  +L  LN+ +  +                 L  L +  N    GN      
Sbjct: 416  DAQSPFQNLHLLKVLNLSHSLLDI--SS--EQLFDGLPALQHLNLQGNHFPKGNIQKTNS 471

Query: 996  VKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFS 1055
              L TL     L L+   LS         L     + H+ L    L S           S
Sbjct: 472  --LQTLGRLEILVLSFCDLSSIDQHAFTSL---KMMNHVDLSHNRLTS-----SSIEALS 521

Query: 1056 RAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPI 1098
               + + L+L+   +                    +NL  NP+
Sbjct: 522  H-LKGIYLNLASNHISIILPSLLPILSQQ----RTINLRQNPL 559

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.9 bits (143), Expect = 9e-09
 Identities = 46/263 (17%), Positives = 78/263 (29%), Gaps = 37/263 (14%)

Query: 915  LFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAEST 974
            + +    ++LS N L        S    N   L  L++  C I +  I+    A      
Sbjct: 30   IPSSTKNIDLSFNPLK----ILKSYSFSNFSELQWLDLSRCEIET--IE--DKAWHGLHH 81

Query: 975  LAQLCIGYNSPVTGNAITNLLVK-LDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTH 1033
            L+ L +  N       I +        L S   L     KL+      + QL     L  
Sbjct: 82   LSNLILTGNP------IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT---LKK 132

Query: 1034 LMLGC---TNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILE 1090
            L +      +         + +L       V +DLSY  +++  ++            L 
Sbjct: 133  LNVAHNFIHSCKLPAYFSNLTNL-------VHVDLSYNYIQTITVNDLQFLRENPQVNLS 185

Query: 1091 LNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNL 1150
            L++  NPI      A   +       L  L L         +   ++ L+    L    L
Sbjct: 186  LDMSLNPIDFIQDQAFQGI------KLHELTLRGNFNSSNIMKTCLQNLAG---LHVHRL 236

Query: 1151 ADNASKELTLQQNLSSVNSENLQ 1173
                 K+    +       E L 
Sbjct: 237  ILGEFKDERNLEIFEPSIMEGLC 259

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.8 bits (135), Expect = 7e-08
 Identities = 45/311 (14%), Positives = 88/311 (28%), Gaps = 65/311 (20%)

Query: 863  LDLSHNLLGNGTMEKLQQFFISSCQNYVDL-TLDLHCNRFGPTTLFQICECPVLFTRLGV 921
            + L+   +           ++     +    +L +   +                  L  
Sbjct: 290  MSLAGVSI----------KYLEDVPKHFKWQSLSIIRCQLKQFPTLD-------LPFLKS 332

Query: 922  LNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIG 981
            L L+ N+ +       S        L  L++   +++       + +    ++L  L + 
Sbjct: 333  LTLTMNKGSI------SFKKVALPSLSYLDLSRNALS--FSGCCSYSDLGTNSLRHLDLS 384

Query: 982  YNS-PVTGNAITNL--LVKLD----------------TLKSFSELNLNGLKLSKPVVDRL 1022
            +N   +       L  L  LD                +L+    L+++            
Sbjct: 385  FNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF 444

Query: 1023 CQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASV 1082
              L     L  L +   N   D +L  V +  +       LDLS C LE      F    
Sbjct: 445  LGLTS---LNTLKMAG-NSFKDNTLSNVFANTTNLTF---LDLSKCQLEQISWGVFDTLH 497

Query: 1083 SLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSEN 1142
             L      LN+  N ++   ++    L       L  L  S  ++      +        
Sbjct: 498  RLQL----LNMSHNNLLFLDSSHYNQLYS-----LSTLDCSFNRI---ETSKG-ILQHFP 544

Query: 1143 DTLEELNLADN 1153
             +L   NL +N
Sbjct: 545  KSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.5 bits (129), Expect = 3e-07
 Identities = 54/369 (14%), Positives = 108/369 (29%), Gaps = 70/369 (18%)

Query: 819  NMKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLL-----GNG 873
            N+  L  + +S            +Q I+V  L       +    LD+S N +        
Sbjct: 151  NLTNLVHVDLSY---------NYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF 201

Query: 874  TMEKLQQFFISSCQNYVDLT------------LDLHCNRFGPTTLFQICECPVLF----T 917
               KL +  +    N  ++               L    F      +I E  ++      
Sbjct: 202  QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261

Query: 918  RLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQ 977
             +    L+         S           + ++++   SI         + +        
Sbjct: 262  TIDEFRLTYTNDF----SDDIVKFHCLANVSAMSLAGVSIKY------LEDVPKHFKWQS 311

Query: 978  LCIGYN--SPVTGNAITNLLV------KLDTLKSFSEL-NLNGLKLSKPVVDRLCQLAKT 1028
            L I            +  L        K         L +L+ L LS+        L+ +
Sbjct: 312  LSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSR------NALSFS 365

Query: 1029 SCLTHLMLGCTNLG----SDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSL 1084
             C ++  LG  +L     S     ++ + F   +E   LD  +  L+   + +F+A +SL
Sbjct: 366  GCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKR--VTEFSAFLSL 423

Query: 1085 VHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDT 1144
               +L L++       +       L       L  L ++        +  +    +    
Sbjct: 424  -EKLLYLDISYTNTKIDFDGIFLGL---TS--LNTLKMAGNSFKDNTLSNVFANTT---N 474

Query: 1145 LEELNLADN 1153
            L  L+L+  
Sbjct: 475  LTFLDLSKC 483

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.4 bits (121), Expect = 3e-06
 Identities = 49/305 (16%), Positives = 85/305 (27%), Gaps = 63/305 (20%)

Query: 812  KELSEAPNMKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLL- 870
            K L + P     + L I           C+L+      L   L +      L L+ N   
Sbjct: 298  KYLEDVPKHFKWQSLSIIR---------CQLKQFPTLDLPF-LKS------LTLTMNKGS 341

Query: 871  ---GNGTMEKLQQFFISSCQNYVD-------------LTLDLHCNRF-GPTTLFQICECP 913
                   +  L    +S                      LDL  N     +  F      
Sbjct: 342  ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGL--- 398

Query: 914  VLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAES 973
                 L  L+   + L         +   + + L  L+I   +                +
Sbjct: 399  ---EELQHLDFQHSTLK---RVTEFSAFLSLEKLLYLDISYTNTKIDF----DGIFLGLT 448

Query: 974  TLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTH 1033
            +L  L +  NS    N ++N+      L     L+L+  +L +        L     L  
Sbjct: 449  SLNTLKMAGNS-FKDNTLSNVFANTTNLT---FLDLSKCQLEQISWGVFDTL---HRLQL 501

Query: 1034 LMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNL 1093
            L +   NL       L  S +++      LD S+  +E++              +   NL
Sbjct: 502  LNMSHNNLLF-----LDSSHYNQLYSLSTLDCSFNRIETS----KGILQHFPKSLAFFNL 552

Query: 1094 GGNPI 1098
              N +
Sbjct: 553  TNNSV 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.1 bits (141), Expect = 1e-08
 Identities = 49/265 (18%), Positives = 78/265 (29%), Gaps = 37/265 (13%)

Query: 913  PVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAE 972
              L      L+LS N L        S    +   L  L++  C I +  I+    A  + 
Sbjct: 24   DNLPFSTKNLDLSFNPLR----HLGSYSFFSFPELQVLDLSRCEIQT--IED--GAYQSL 75

Query: 973  STLAQLCIGYNSPVTGNAITNLLVK-LDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCL 1031
            S L+ L +  N       I +L +     L S  +L      L+      +  L     L
Sbjct: 76   SHLSTLILTGNP------IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT---L 126

Query: 1032 THLMLGC---TNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGI 1088
              L +      +         + +L         LDLS   ++S           +    
Sbjct: 127  KELNVAHNLIQSFKLPEYFSNLTNL-------EHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 1089 LELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEEL 1148
            L L+L  NP+      A   +       L  L L      L  +   I+ L+    LE  
Sbjct: 180  LSLDLSLNPMNFIQPGAFKEI------RLHKLTLRNNFDSLNVMKTCIQGLAG---LEVH 230

Query: 1149 NLADNASKELTLQQNLSSVNSENLQ 1173
             L     +     +       E L 
Sbjct: 231  RLVLGEFRNEGNLEKFDKSALEGLC 255

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.3 bits (139), Expect = 2e-08
 Identities = 54/329 (16%), Positives = 94/329 (28%), Gaps = 56/329 (17%)

Query: 845  ISVTPLLNALHTHKTVALLDLSHN-LLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGP 903
             S+  +   +     + +  L        G +EK  +  +    N       L    +  
Sbjct: 212  DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 271

Query: 904  TTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQ 963
              +  +  C    T +   +L    +                    L + NC        
Sbjct: 272  DDIIDLFNC---LTNVSSFSLVSVTIER------VKDFSYNFGWQHLELVNCKFGQFPTL 322

Query: 964  KVADALGAESTLAQLCIGYNSPVTGNAITNL--LVKLD-----------------TLKSF 1004
            K+        +L +L    N      +  +L  L  LD                    S 
Sbjct: 323  KL-------KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 1005 SELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLD 1064
              L+L+   +                L HL    +NL          S+F   +  + LD
Sbjct: 376  KYLDLSFNGVI----TMSSNFLGLEQLEHLDFQHSNLKQMSEF----SVFLSLRNLIYLD 427

Query: 1065 LSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSK 1124
            +S+          F    SL      L + GN   +     + + L N    L  L LS+
Sbjct: 428  ISHTHTRVAFNGIFNGLSSLEV----LKMAGNSFQENFLPDIFTELRN----LTFLDLSQ 479

Query: 1125 CQLGLAGVLQLIKALSENDTLEELNLADN 1153
            CQ  L  +     A +   +L+ LN++ N
Sbjct: 480  CQ--LEQLSP--TAFNSLSSLQVLNMSHN 504

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.8 bits (135), Expect = 7e-08
 Identities = 55/354 (15%), Positives = 92/354 (25%), Gaps = 64/354 (18%)

Query: 819  NMKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLL-----GNG 873
            N+  L+ L +S           ++Q I  T L            LDLS N +     G  
Sbjct: 147  NLTNLEHLDLSS---------NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

Query: 874  TMEKLQQFFISSCQNYVDLT------------LDLHCNRFGPTTLFQICECPVLFTRLGV 921
               +L +  + +  + +++               L    F      +  +       L  
Sbjct: 198  KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD-KSALEGLCN 256

Query: 922  LNLSGNRLT--DACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLC 979
            L +   RL   D     +  +      + S ++ + +I                    L 
Sbjct: 257  LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER------VKDFSYNFGWQHLE 310

Query: 980  IGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCT 1039
            +                    LKS   L     K                 L  L L   
Sbjct: 311  LVNCK------FGQFP--TLKLKSLKRLTFTSNKGGNAF-----SEVDLPSLEFLDLSRN 357

Query: 1040 NLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIM 1099
             L   G                 LDLS+ G+  T    F     L H    L+   + + 
Sbjct: 358  GLSFKG---CCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEH----LDFQHSNLK 409

Query: 1100 KEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADN 1153
            +    ++   L N    L  L +S                +   +LE L +A N
Sbjct: 410  QMSEFSVFLSLRN----LIYLDISHTH--TRVAFN--GIFNGLSSLEVLKMAGN 455

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.7 bits (127), Expect = 7e-07
 Identities = 54/322 (16%), Positives = 97/322 (30%), Gaps = 50/322 (15%)

Query: 863  LDLSHNLLGN------GTMEKLQQFFISSCQ----------NYVDLT-LDLHCNRFGPTT 905
            L L+ N + +        +  LQ+                 +   L  L++  N      
Sbjct: 81   LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI---Q 137

Query: 906  LFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKV 965
             F++ E     T L  L+LS N++     + L  + +   +  SL++    +       +
Sbjct: 138  SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-----I 192

Query: 966  ADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQL 1025
                  E  L +L +  N   + N +   +  L  L+    +                 L
Sbjct: 193  QPGAFKEIRLHKLTLRNNF-DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251

Query: 1026 AKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLV 1085
                 LT        L  D  L  +  LF+         L    +E   +  F+ +    
Sbjct: 252  EGLCNLTIEEFRLAYL--DYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQ 307

Query: 1086 HGILELNLGGNPIMKEGANALASL---------LMNPQC-----CLKVLVLSKCQLGLAG 1131
            H    L L      +     L SL           N         L+ L LS+  L   G
Sbjct: 308  H----LELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG 363

Query: 1132 VLQLIKALSENDTLEELNLADN 1153
                 ++     +L+ L+L+ N
Sbjct: 364  C--CSQSDFGTTSLKYLDLSFN 383

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.2 bits (123), Expect = 2e-06
 Identities = 70/414 (16%), Positives = 117/414 (28%), Gaps = 69/414 (16%)

Query: 863  LDLSHNLLGNGTMEKLQQFFISSCQNYVDLT-LDLHCNRFG--PTTLFQICECPVLFTRL 919
            LDLS N         L+     S  ++ +L  LDL            +Q        + L
Sbjct: 33   LDLSFN--------PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL------SHL 78

Query: 920  GVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLC 979
              L L+GN +     S           L  L     ++ S         +G   TL +L 
Sbjct: 79   STLILTGNPIQ----SLALGAFSGLSSLQKLVAVETNLAS----LENFPIGHLKTLKELN 130

Query: 980  IGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAK-TSCLTHLMLGC 1038
            + +N   +             L +   L+L+  K+       L  L +       L L  
Sbjct: 131  VAHNLIQSFKLPEY----FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 1039 TNLGS--DGSLQLVESLFSRAQESVKLDLSYCGLE----STCIHKFTASVSLVHGILELN 1092
              +     G+ + +  L        KL L           TCI            + E  
Sbjct: 187  NPMNFIQPGAFKEI-RL-------HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 1093 LGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLAD 1152
                 + K   +AL  L     C L +       L       +I   +    +   +L  
Sbjct: 239  -NEGNLEKFDKSALEGL-----CNLTIEEFRLAYLDYYL-DDIIDLFNCLTNVSSFSLVS 291

Query: 1153 NASKELTLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDK 1212
                  T+++      +   Q  L+  +C   +  T +            L+      +K
Sbjct: 292  V-----TIERVKDFSYNFGWQ-HLELVNCKFGQFPTLK---------LKSLKRLTFTSNK 336

Query: 1213 IRVESAASGFDNSCTSSCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFST 1266
                 +     +       +N      F    S +      L+ LDLS NG  T
Sbjct: 337  GGNAFSEVDLPSLEFLDLSRNG---LSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.8 bits (109), Expect = 1e-04
 Identities = 51/305 (16%), Positives = 89/305 (29%), Gaps = 75/305 (24%)

Query: 862  LLDLSHNLLGNGTMEKLQQFFISSCQNYVDLT---------LDLHCNRFGPTTLFQICEC 912
            L++          ++ L++   +S +     +         LDL  N      L     C
Sbjct: 311  LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG-----LSFKGCC 365

Query: 913  PVLF---TRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADAL 969
                   T L  L+LS N +       +S+     + L  L+ ++ ++           +
Sbjct: 366  SQSDFGTTSLKYLDLSFNGVIT-----MSSNFLGLEQLEHLDFQHSNLKQ---------M 411

Query: 970  GAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTS 1029
               S    L              NL+           L+++              L+   
Sbjct: 412  SEFSVFLSL-------------RNLIY----------LDISHTHTRVAFNGIFNGLSS-- 446

Query: 1030 CLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGIL 1089
             L  L +   +         +  +F+  +    LDLS C LE      F +  SL     
Sbjct: 447  -LEVLKMAGNSF----QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV--- 498

Query: 1090 ELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQL-GLAGVLQLIKALSENDTLEEL 1148
             LN+  N            L       L+VL  S   +       Q ++    +  L  L
Sbjct: 499  -LNMSHNNFFSLDTFPYKCLNS-----LQVLDYSLNHIMTS--KKQELQHFPSS--LAFL 548

Query: 1149 NLADN 1153
            NL  N
Sbjct: 549  NLTQN 553

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 48/240 (20%), Positives = 76/240 (31%), Gaps = 38/240 (15%)

Query: 862  LLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGV 921
             LDLS N L          F  +S +      LDL  N     T+           +L  
Sbjct: 351  FLDLSRNGLSFKGCCSQSDFGTTSLK-----YLDLSFNGV--ITMSSNFLG---LEQLEH 400

Query: 922  LNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIG 981
            L+   + L     S  S +  + + L  L+I +                  S+L  L + 
Sbjct: 401  LDFQHSNLKQM--SEFS-VFLSLRNLIYLDISHTHTRV----AFNGIFNGLSSLEVLKMA 453

Query: 982  YNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNL 1041
             NS    N + ++  +L  L     L+L+  +L +        L   S L  L +   N 
Sbjct: 454  GNS-FQENFLPDIFTELRNLTF---LDLSQCQLEQLSPTAFNSL---SSLQVLNMSHNNF 506

Query: 1042 GSDGSLQLVESLFSRAQESVKLDLSY---CGLESTCIHKFTASVSLVHGILELNLGGNPI 1098
             S     L    +        LD S       +   +  F +S++       LNL  N  
Sbjct: 507  FS-----LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA------FLNLTQNDF 555

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 56.5 bits (136), Expect = 4e-08
 Identities = 48/369 (13%), Positives = 105/369 (28%), Gaps = 47/369 (12%)

Query: 802  RLMKLYIECCKELSEAPNMKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKTVA 861
             L  L ++     +    +      Y++    E+  +  +L+ +            + + 
Sbjct: 74   NLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHF----------RRMI 123

Query: 862  LLDLSHNLLGNGTMEKLQQFFISSCQNYVDL-------------TLDLHCNRFGPTTLFQ 908
            + DL  + L     + L+   +  C  +                TL +  + F       
Sbjct: 124  VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW 183

Query: 909  ICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCS-ITSRTIQKVAD 967
            + E     T L VLN             L TI +NC+ L S+ + +   +      K A 
Sbjct: 184  LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAA 243

Query: 968  ALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAK 1027
             L          +  +  +    +  +  +       S +  N +    P++        
Sbjct: 244  NL---EEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM----PILFPFA---- 292

Query: 1028 TSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHG 1087
             + +  L L    L ++    L++   +       L+      +            L   
Sbjct: 293  -AQIRKLDLLYALLETEDHCTLIQKCPNL----EVLETRNVIGDRGLEVLAQYCKQLKR- 346

Query: 1088 ILELNLGGNPIMKEGANAL---ASLLMNPQCC--LKVLVLSKCQLGLAGVLQLIKALSEN 1142
             L +  G +    E    L     L+   Q C  L+ + +    +    +  +   L   
Sbjct: 347  -LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNL 405

Query: 1143 DTLEELNLA 1151
                 + L 
Sbjct: 406  CDFRLVLLD 414

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 51.9 bits (125), Expect = 5e-08
 Identities = 16/121 (13%), Positives = 44/121 (36%), Gaps = 10/121 (8%)

Query: 159 SSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNV 218
           S+ + +   A  ++G    +  + E+A     + +E+                ++N   V
Sbjct: 1   SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNIT---------FYNNKAAV 51

Query: 219 YMELRMWDKSREHIEQDIII-CKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALN 277
           Y E + + +  +  E+ + +  +     +  AK     G    +      A+  + ++L+
Sbjct: 52  YFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111

Query: 278 L 278
            
Sbjct: 112 E 112

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 51.3 bits (124), Expect = 6e-08
 Identities = 11/117 (9%), Positives = 37/117 (31%), Gaps = 13/117 (11%)

Query: 162 LKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYME 221
           + +  + +   G+LQ +  N  E+     + +++         D   S+     G     
Sbjct: 2   VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQL---------DPEESKYWLMKGKALYN 52

Query: 222 LRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNL 278
           L  ++++ +     I + +   +       +    +    ++  +      +    L
Sbjct: 53  LERYEEAVDCYNYVINVIEDEYN----KDVWAAKADALRYIEGKEVEAEIAEARAKL 105

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 15/76 (19%), Positives = 38/76 (50%), Gaps = 6/76 (7%)

Query: 212 HHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILC 271
           ++  G +  +   + +S +  E+ I +    E     +K ++  G+  Y +++Y+EA+ C
Sbjct: 9   YYLEGVLQYDAGNYTESIDLFEKAIQL--DPEE----SKYWLMKGKALYNLERYEEAVDC 62

Query: 272 YQKALNLAQSMEDEDA 287
           Y   +N+ +   ++D 
Sbjct: 63  YNYVINVIEDEYNKDV 78

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 51.5 bits (124), Expect = 9e-08
 Identities = 29/149 (19%), Positives = 56/149 (37%), Gaps = 24/149 (16%)

Query: 167 DAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWD 226
                +G    +  + + A K   +  E+                  N   VY E   ++
Sbjct: 5   LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMT---------YITNQAAVYFEKGDYN 55

Query: 227 KSREHIEQDIIICKKIEHCQGE-AKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDE 285
           K RE  E+ I + ++      + AK Y  +G  +++ +KY +AI  Y K+L         
Sbjct: 56  KCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL--------- 106

Query: 286 DALASQIDQNIETVKKAIEVMDELKKEEQ 314
                   +  + +KK  +    LK++E+
Sbjct: 107 -----AEHRTPDVLKKCQQAEKILKEQER 130

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.5 bits (134), Expect = 9e-08
 Identities = 52/347 (14%), Positives = 100/347 (28%), Gaps = 80/347 (23%)

Query: 841  ELQDISVTPL----LNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDL 896
            EL+D ++       L        +  L    ++L + +  +L +      +       D 
Sbjct: 202  ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261

Query: 897  HCNR---FGPTTLFQICECPVL-FTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNI 952
              N    F P+    + E   +    +  L++    L       LST+    + +  + +
Sbjct: 262  TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF----YDLSTVYSLLEKVKRITV 317

Query: 953  ENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGL 1012
            EN  +                            V  +   +L       KS   L+L+  
Sbjct: 318  ENSKVFL--------------------------VPCSFSQHL-------KSLEFLDLSEN 344

Query: 1013 KLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLES 1072
             + +  +           L  L+L   +L    S+Q    +    +    LD+S      
Sbjct: 345  LMVEEYLKNSACKGAWPSLQTLVLSQNHL---RSMQKTGEILLTLKNLTSLDISRNTFHP 401

Query: 1073 TCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGV 1132
                    S      +  LNL            +  +       L+VL +S   L     
Sbjct: 402  -----MPDSCQWPEKMRFLNLSSTG--------IRVVKTCIPQTLEVLDVSNNNL----- 443

Query: 1133 LQLIKALSENDT-LEELNLADNASKELTLQQNLSSVNSENLQPALKT 1178
                 + S     L+EL ++ N          L ++   +L P L  
Sbjct: 444  ----DSFSLFLPRLQELYISRN---------KLKTLPDASLFPVLLV 477

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.3 bits (131), Expect = 2e-07
 Identities = 55/315 (17%), Positives = 89/315 (28%), Gaps = 46/315 (14%)

Query: 863  LDLSHNLLGNGTMEKLQQFFISSCQNYVDLT-LDLHCNRFG--PTTLFQICECPVLFTRL 919
            LDLS N        K+        +   +L  L L  +R        F           L
Sbjct: 31   LDLSFN--------KITYIGHGDLRACANLQVLILKSSRINTIEGDAFY------SLGSL 76

Query: 920  GVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLC 979
              L+LS N L+       S+       L  LN+      +  +  +   L   + L  L 
Sbjct: 77   EHLDLSDNHLSSL----SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL---TNLQTLR 129

Query: 980  IGYNSPVTGNAITNLLVK-LDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGC 1038
            IG          + +       L S +EL +  L L       L  +     + HL    
Sbjct: 130  IGNV-----ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD---IHHL---- 177

Query: 1039 TNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPI 1098
              L    S  L+E           L+L    L                    +       
Sbjct: 178  -TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVS----SPMKKLAFRG 232

Query: 1099 MKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQL----IKALSENDTLEELNLADNA 1154
                  +   LL   +  L++  +      L G+          +SE   +E + +    
Sbjct: 233  SVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH 292

Query: 1155 SKELTLQQNLSSVNS 1169
              +  L  +LS+V S
Sbjct: 293  IPQFYLFYDLSTVYS 307

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.9 bits (122), Expect = 2e-06
 Identities = 54/323 (16%), Positives = 101/323 (31%), Gaps = 49/323 (15%)

Query: 863  LDLSHNLLGNGTMEKLQQFFISSCQNYVDLT-LDLHCNRFGPTTLFQICECPVLFTRLGV 921
            LDLS N L +     L   +     +   L  L+L  N +       +       T L  
Sbjct: 79   LDLSDNHLSS-----LSSSWFGPLSS---LKYLNLMGNPY---QTLGVTSLFPNLTNLQT 127

Query: 922  LNLSG-NRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCI 980
            L +      +                L  L I+  S+ +   Q    +L +   +  L +
Sbjct: 128  LRIGNVETFS----EIRRIDFAGLTSLNELEIKALSLRN--YQS--QSLKSIRDIHHLTL 179

Query: 981  GYNSPVTGNAITNLLVK-LDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCT 1039
              +          LL    D L S   L L    L++     L     +S +  L    +
Sbjct: 180  HLSE------SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233

Query: 1040 NLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTC------IHKFTASVSLVHGILE-LN 1092
             L +D S   +  L     E  +++   C L              +    +    +  L+
Sbjct: 234  VL-TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH 292

Query: 1093 LGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLI--KALSENDTLEELNL 1150
            +    +  + +    SLL      +K + +   ++       L+         +LE L+L
Sbjct: 293  IPQFYLFYDLSTVY-SLLEK----VKRITVENSKV------FLVPCSFSQHLKSLEFLDL 341

Query: 1151 ADNASKELTLQQNLSSVNSENLQ 1173
            ++N   E  L+ +       +LQ
Sbjct: 342  SENLMVEEYLKNSACKGAWPSLQ 364

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.0 bits (117), Expect = 1e-05
 Identities = 57/361 (15%), Positives = 114/361 (31%), Gaps = 42/361 (11%)

Query: 910  CECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADAL 969
              C       GV +      T    S  S +      + SL++    IT   I      L
Sbjct: 2    LSCD----ASGVCDGRSRSFT----SIPSGLTAA---MKSLDLSFNKITY--IGH--GDL 46

Query: 970  GAESTLAQLCIGYNSPVTGNAITNLLVK-LDTLKSFSELNLNGLKLSKPVVDRLCQLAKT 1028
             A + L  L +  +       I  +      +L S   L+L+   LS         L+  
Sbjct: 47   RACANLQVLILKSSR------INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS- 99

Query: 1029 SCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLS-YCGLESTCIHKFTASVSLVHG 1087
              L +L L      + G    V SLF        L +             F    SL   
Sbjct: 100  --LKYLNLMGNPYQTLG----VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN-- 151

Query: 1088 ILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLG--LAGVLQLIKALSENDTL 1145
              EL +    +    + +L S+       +  L L   +    L     ++ ++   + L
Sbjct: 152  --ELEIKALSLRNYQSQSLKSIRD-----IHHLTLHLSESAFLLEIFADILSSVRYLE-L 203

Query: 1146 EELNLADNASKELTLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEV 1205
             + NLA      L + +  S +     + ++ T +  ++ +   ++ L     + +D  +
Sbjct: 204  RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263

Query: 1206 ADSEDDKIRVESAASGFDNSCTSSCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFS 1265
                D         S      T + ++    +     +LS+   + + ++ + + N+   
Sbjct: 264  NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323

Query: 1266 T 1266
             
Sbjct: 324  L 324

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 54.1 bits (130), Expect = 2e-07
 Identities = 54/255 (21%), Positives = 89/255 (34%), Gaps = 30/255 (11%)

Query: 892  LTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLN 951
            L+  +   R   + + Q         R+  ++LS + +  +    L  IL  C  L +L+
Sbjct: 68   LSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST---LHGILSQCSKLQNLS 124

Query: 952  IENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNG 1011
            +E   ++   +      L   S L +L +   S  +  A+  LL     L    ELNL+ 
Sbjct: 125  LEGLRLSDPIVN----TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD---ELNLSW 177

Query: 1012 LKLSKPVVDR-LCQLAKTSC--LTHLML-GCTNLGSDGSLQLVESLFSRAQESVKLDLSY 1067
                    ++ +          +T L L G         L    +L  R    V LDLS 
Sbjct: 178  CFD---FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS---TLVRRCPNLVHLDLSD 231

Query: 1068 C-GLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQ 1126
               L++ C  +F     L H    L+L     +      L  L   P   LK L +    
Sbjct: 232  SVMLKNDCFQEFFQLNYLQH----LSLSRCYDIIP--ETLLELGEIPT--LKTLQVFGI- 282

Query: 1127 LGLAGVLQLIKALSE 1141
            +    +  L +AL  
Sbjct: 283  VPDGTLQLLKEALPH 297

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 37/260 (14%), Positives = 74/260 (28%), Gaps = 50/260 (19%)

Query: 802  RLMKLYIECCKELSEAPNMKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKTVA 861
                +   C +   + P  +      +  ++    +S   ++  ++  +L+     +   
Sbjct: 69   SQGVIAFRCPRSFMDQPLAEHFSPFRVQHMD----LSNSVIEVSTLHGILSQCSKLQN-- 122

Query: 862  LLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICE-CPVLFTRLG 920
             L L    L +  +  L     +   N V L L   C+ F    L  +   C     RL 
Sbjct: 123  -LSLEGLRLSDPIVNTL-----AKNSNLVRLNLS-GCSGFSEFALQTLLSSCS----RLD 171

Query: 921  VLNLSG-NRLTDACGSYLSTILKNCKVLYSLNIENCS--ITSRTIQKVADALGAESTLAQ 977
             LNLS     T+        +    + +  LN+      +    +  +         L  
Sbjct: 172  ELNLSWCFDFTEKHVQVA--VAHVSETITQLNLSGYRKNLQKSDLSTLVRRC---PNLVH 226

Query: 978  LCIGYNSPVTGNAITNL-----LVKLD----------TLKSFSEL-NLNGLKLSKPVVDR 1021
            L +  +  +  +          L  L           TL    E+  L  L        +
Sbjct: 227  LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL--------Q 278

Query: 1022 LCQLAKTSCLTHLMLGCTNL 1041
            +  +     L  L     +L
Sbjct: 279  VFGIVPDGTLQLLKEALPHL 298

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 51.6 bits (124), Expect = 1e-06
 Identities = 70/342 (20%), Positives = 108/342 (31%), Gaps = 77/342 (22%)

Query: 852  NALHTHKTVALLDLSHNLLGN------GTMEKLQQFFISSCQ----------NYVDLT-L 894
              L + + V LL+L+   +             +Q+ ++              N   LT L
Sbjct: 63   ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122

Query: 895  DLHCNRFG--PTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNI 952
             L  N     P  +F          +L  L++S N L            +    L +L +
Sbjct: 123  VLERNDLSSLPRGIFHNT------PKLTTLSMSNNNLE----RIEDDTFQATTSLQNLQL 172

Query: 953  ENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGL 1012
             +  +T   +      L    +L    + YN           L  L    +  EL+ +  
Sbjct: 173  SSNRLTH--VD-----LSLIPSLFHANVSYNL----------LSTLAIPIAVEELDASHN 215

Query: 1013 KLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLES 1072
             ++        +      LT L L   NL     L     L       V++DLSY  LE 
Sbjct: 216  SINVVRGPVNVE------LTILKLQHNNLTDTAWLLNYPGL-------VEVDLSYNELEK 262

Query: 1073 TCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGV 1132
               H F     L      L +  N +     N     +      LKVL LS   L     
Sbjct: 263  IMYHPFVKMQRLE----RLYISNNRL--VALNLYGQPIPT----LKVLDLSHNHL----- 307

Query: 1133 LQLIKALSENDTLEELNLADNASKELTLQ--QNLSSVN-SEN 1171
            L + +   + D LE L L  N+   L L     L ++  S N
Sbjct: 308  LHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHN 349

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 46.6 bits (112), Expect = 2e-06
 Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 6/67 (8%)

Query: 212 HHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILC 271
            +NLGN Y +   +D++ E+ ++ + +     +    A+ + NLG  +Y+   YDEAI  
Sbjct: 12  WYNLGNAYYKQGDYDEAIEYYQKALEL--DPNN----AEAWYNLGNAYYKQGDYDEAIEY 65

Query: 272 YQKALNL 278
           YQKAL L
Sbjct: 66  YQKALEL 72

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 21/153 (13%), Positives = 50/153 (32%), Gaps = 27/153 (17%)

Query: 145 KLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSED 204
            L   ++ NP         +  +    +G   +  ++   +     + L++         
Sbjct: 32  ALQDKIRANP---------QNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--------- 73

Query: 205 DDGRSRLHHNLGNVYMEL---RMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYR 261
               + L+  L  V        M  ++R  I++ +     ++    E    + L    + 
Sbjct: 74  RGENAELYAALATVLYYQASQHMTAQTRAMIDKAL----ALDS--NEITALMLLASDAFM 127

Query: 262 VQKYDEAILCYQKALNLAQSMEDEDALASQIDQ 294
              Y +AI  +QK ++L     +   L   I+ 
Sbjct: 128 QANYAQAIELWQKVMDLNSPRINRTQLVESINM 160

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 50.9 bits (121), Expect = 2e-06
 Identities = 27/194 (13%), Positives = 61/194 (31%), Gaps = 21/194 (10%)

Query: 120 YEMFLRSDDDHYSIRNAKKYFKSAMKL-AQTLKENPATSRSSFLKEYIDAHNNIGMLQME 178
              F ++    Y +    K    A +L  + ++ +P         E+  A     ++ + 
Sbjct: 197 LTNFYQAH--DYLLHGDDKSLNRASELLGEIVQSSP---------EFTYARAEKALVDIV 245

Query: 179 LDNLEEA-KKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDII 237
             +     +K L       +      + +  S ++       +     D+S + I   I 
Sbjct: 246 RHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGID 305

Query: 238 ICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQ-NI 296
           +             Y+ LG+++       EA   Y  A NL         + + I Q ++
Sbjct: 306 LEM-------SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQTSV 358

Query: 297 ETVKKAIEVMDELK 310
             V   ++     +
Sbjct: 359 PYVVPYLDKFLASE 372

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 50.3 bits (120), Expect = 2e-06
 Identities = 44/278 (15%), Positives = 82/278 (29%), Gaps = 39/278 (14%)

Query: 823  LKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHN-LLGNGTMEKLQQF 881
            LK+L +        +    L+ + ++ L            L L +  + G      L+  
Sbjct: 70   LKRLTVRAARIPSRILFGALRVLGISGLQE----------LTLENLEVTGTAPPPLLEAT 119

Query: 882  FISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTIL 941
                        L+L    +     +       L   L VL+++         ++    +
Sbjct: 120  GPDL------NILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL----NFSCEQV 169

Query: 942  KNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTL 1001
            +    L +L++ +           A       TL  L +      T + + + L      
Sbjct: 170  RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA--R 227

Query: 1002 KSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESV 1061
                 L+L+   L        C       L  L L  T L       + + L ++     
Sbjct: 228  VQLQGLDLSHNSLRDAAGAPSCDWPSQ--LNSLNLSFTGLKQ-----VPKGLPAKLSV-- 278

Query: 1062 KLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIM 1099
             LDLSY  L+            +      L+L GNP +
Sbjct: 279  -LDLSYNRLDR--NPSPDELPQVG----NLSLKGNPFL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 52/281 (18%), Positives = 82/281 (29%), Gaps = 45/281 (16%)

Query: 772  GGRSLESFDAFKDQLGKDIIEVSIDGWVQKRLMKLYIECCKELSEAPNMKLLKKLYISEV 831
            GGRSLE      D          I   +   L +L +   + +        L+ L IS +
Sbjct: 41   GGRSLEYLLKRVDTEADLGQFTDIIKSL--SLKRLTVRAAR-IPSRILFGALRVLGISGL 97

Query: 832  EDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTME--------------- 876
            + E+ +   E+   +  PLL A  T   + +L+L +                        
Sbjct: 98   Q-ELTLENLEVTGTAPPPLLEA--TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVL 154

Query: 877  -----KLQQFFISSCQNYVDLT-LDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLT 930
                     F     + +  L+ LDL  N            CP+ F  L VL L    + 
Sbjct: 155  SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214

Query: 931  DACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSP--VTG 988
               G   S +      L  L++ + S+        A +    S L  L + +     V  
Sbjct: 215  TPSGV-CSALAAARVQLQGLDLSHNSLRDAAG---APSCDWPSQLNSLNLSFTGLKQVPK 270

Query: 989  NAITNL------------LVKLDTLKSFSELNLNGLKLSKP 1017
                 L                D L     L+L G      
Sbjct: 271  GLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLDS 311

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 13/105 (12%), Positives = 30/105 (28%), Gaps = 21/105 (20%)

Query: 212 HHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILC 271
               G   ++L    ++    E         +      + + +LG      +K   AI+ 
Sbjct: 20  PMEEGLSMLKLANLAEAALAFE------AVCQKEPEREEAWRSLGLTQAENEKDGLAIIA 73

Query: 272 YQKAL-----------NLAQSMEDEDALASQIDQNIETVKKAIEV 305
              A             LA S  +E       +  + +++  +  
Sbjct: 74  LNHARMLDPKDIAVHAALAVSHTNE----HNANAALASLRAWLLS 114

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 43.2 bits (102), Expect = 5e-05
 Identities = 12/114 (10%), Positives = 30/114 (26%), Gaps = 22/114 (19%)

Query: 125 RSDDDHYSI----RNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELD 180
              ++               ++A+      ++ P         E  +A  ++G+ Q E +
Sbjct: 15  MYHENPMEEGLSMLKLANLAEAALAFEAVCQKEP---------EREEAWRSLGLTQAENE 65

Query: 181 NLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQ 234
               A   L     +         D     +H  L   +      + +   +  
Sbjct: 66  KDGLAIIALNHARML---------DPKDIAVHAALAVSHTNEHNANAALASLRA 110

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.1 bits (120), Expect = 3e-06
 Identities = 52/249 (20%), Positives = 84/249 (33%), Gaps = 53/249 (21%)

Query: 915  LFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAEST 974
            + +    LNL  N +        +   ++   L  L +   SI    I+    A    ++
Sbjct: 73   IPSNTRYLNLMENNIQ----MIQADTFRHLHHLEVLQLGRNSIR--QIE--VGAFNGLAS 124

Query: 975  LAQLCIGYNSPVTGNAITNL----LVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSC 1030
            L  L +  N       +T +       L  L+   EL L    +         ++     
Sbjct: 125  LNTLELFDNW------LTVIPSGAFEYLSKLR---ELWLRNNPIESIPSYAFNRVPS--- 172

Query: 1031 LTHLMLGCTN-LG--SDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHG 1087
            L  L LG    L   S+G+ + + +L         L+L  C ++   +   T  V L   
Sbjct: 173  LMRLDLGELKKLEYISEGAFEGLFNL-------KYLNLGMCNIKD--MPNLTPLVGLE-- 221

Query: 1088 ILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLI--KALSENDTL 1145
              EL + GN   +    +   L       LK L +   Q      + LI   A     +L
Sbjct: 222  --ELEMSGNHFPEIRPGSFHGLSS-----LKKLWVMNSQ------VSLIERNAFDGLASL 268

Query: 1146 EELNLADNA 1154
             ELNLA N 
Sbjct: 269  VELNLAHNN 277

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 49.4 bits (117), Expect = 3e-06
 Identities = 41/308 (13%), Positives = 91/308 (29%), Gaps = 33/308 (10%)

Query: 42  GEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKD 101
           G Y + +   +     S +   E+ +      L   YL    +   L  ++K        
Sbjct: 13  GSYQQCINEAQRVKPSSPERDVERDVF-----LYRAYLAQRKYGVVLD-EIKPSSAPELQ 66

Query: 102 ASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSF 161
           A  +  +  A             R       + N      +A       +   A  R+  
Sbjct: 67  AVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFY-DQNPDAALRTLH 125

Query: 162 LKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYME 221
             + ++       + ++LD L+ A+K L +  +        ++D   ++L     ++   
Sbjct: 126 QGDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-------DEDATLTQLATAWVSLAAG 178

Query: 222 LRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQS 281
                 +    +      +  + C             H    +++ A    Q+AL+    
Sbjct: 179 GEKLQDAYYIFQ------EMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS- 231

Query: 282 MEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNA 341
               + L + +  +     K  EV +    +   LK   R+           K    +  
Sbjct: 232 -GHPETLINLVVLSQHL-GKPPEVTNRYLSQ---LKDAHRS-------HPFIKEYRAKEN 279

Query: 342 SLDRLIEK 349
             DRL+ +
Sbjct: 280 DFDRLVLQ 287

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 48.2 bits (115), Expect = 4e-06
 Identities = 25/154 (16%), Positives = 54/154 (35%), Gaps = 23/154 (14%)

Query: 183 EEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKK- 241
           +EA  F I   E  ++  + +  +     + NL   Y + + + K+ +H         K 
Sbjct: 62  KEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDH-------ASKV 114

Query: 242 IEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKK 301
           ++  +   K    LG  +      +EA     KA                ++ N   ++ 
Sbjct: 115 LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA--------------SLNPNNLDIRN 160

Query: 302 AI-EVMDELKKEEQNLKKLTRNMIIAKGTSQERK 334
           +    +++LK+  +  K     M       +E+K
Sbjct: 161 SYELCVNKLKEARKKDKLTFGGMFDKGPLYEEKK 194

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 50.1 bits (119), Expect = 4e-06
 Identities = 45/292 (15%), Positives = 91/292 (31%), Gaps = 65/292 (22%)

Query: 863  LDLSHNLLGNGTMEKLQQFFISSCQNYVDLT-LDLHCNRFGPTTLFQICECPVLFTRLGV 921
             +L    + +            +      +  +  + +     ++  I         +  
Sbjct: 26   DNLKKKSVTD----------AVTQNELNSIDQIIANNSDI--KSVQGIQY----LPNVTK 69

Query: 922  LNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIG 981
            L L+GN+LTD         L N K L  L ++   I    +     +L     L  L + 
Sbjct: 70   LFLNGNKLTDIKP------LTNLKNLGWLFLDENKIKD--L----SSLKDLKKLKSLSLE 117

Query: 982  YNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNL 1041
                   N I++ +  L  L     L L   K++      +  L++ + L  L L    +
Sbjct: 118  ------HNGISD-INGLVHLPQLESLYLGNNKITD-----ITVLSRLTKLDTLSLEDNQI 165

Query: 1042 GSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKE 1101
                 L  +  L         L LS   +    +       +L      L L     + +
Sbjct: 166  SDIVPLAGLTKL-------QNLYLSKNHISD--LRALAGLKNLD----VLELFSQECLNK 212

Query: 1102 GANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADN 1153
              N  ++L++     +K            G L   + +S++   E+ N+  +
Sbjct: 213  PINHQSNLVVPNT--VKN---------TDGSLVTPEIISDDGDYEKPNVKWH 253

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 44.7 bits (105), Expect = 2e-04
 Identities = 51/256 (19%), Positives = 81/256 (31%), Gaps = 52/256 (20%)

Query: 916  FTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTL 975
            F      NL    +TD       T       +  +   N  I S         +     +
Sbjct: 20   FAETIKDNLKKKSVTD-----AVT-QNELNSIDQIIANNSDIKS------VQGIQYLPNV 67

Query: 976  AQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLM 1035
             +L +  N       +T++   L  LK+   L L+  K+    +  L  L K   L  L 
Sbjct: 68   TKLFLNGNK------LTDIKP-LTNLKNLGWLFLDENKIKD--LSSLKDLKK---LKSLS 115

Query: 1036 LGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGG 1095
            L    +     L  +  L         L L    +  T I   +    L      L+L  
Sbjct: 116  LEHNGISDINGLVHLPQL-------ESLYLGNNKI--TDITVLSRLTKLD----TLSLED 162

Query: 1096 NPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADN-- 1153
            N I       +  L    +  L+ L LSK        +  ++AL+    L+ L L     
Sbjct: 163  NQISD-----IVPLAGLTK--LQNLYLSKNH------ISDLRALAGLKNLDVLELFSQEC 209

Query: 1154 ASKELTLQQNLSSVNS 1169
             +K +  Q NL   N+
Sbjct: 210  LNKPINHQSNLVVPNT 225

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 45.8 bits (109), Expect = 7e-06
 Identities = 22/108 (20%), Positives = 45/108 (41%), Gaps = 10/108 (9%)

Query: 205 DDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKK-IEHCQGEAKGYINLGELHYRVQ 263
           +   +  + N    Y++++  +++      D   C++ +E      K +  LG+    ++
Sbjct: 39  NPLVAVYYTNRALCYLKMQQPEQA----LAD---CRRALELDGQSVKAHFFLGQCQLEME 91

Query: 264 KYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKK 311
            YDEAI   Q+A +LA+  E        I   +   KK      E ++
Sbjct: 92  SYDEAIANLQRAYSLAK--EQRLNFGDDIPSALRIAKKKRWNSIEERR 137

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 45.7 bits (109), Expect = 8e-06
 Identities = 27/143 (18%), Positives = 54/143 (37%), Gaps = 24/143 (16%)

Query: 163 KEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMEL 222
               +     G  QM+++N E A  F  + +E+         +   +    N    Y +L
Sbjct: 9   SAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL---------NPANAVYFCNRAAAYSKL 59

Query: 223 RMWDKSREHIEQDIIICKK-IEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQS 281
             +  +     QD   C++ I      +K Y  +G     + K+ EA+  Y+KAL L   
Sbjct: 60  GNYAGA----VQD---CERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL--- 109

Query: 282 MEDEDALASQIDQNIETVKKAIE 304
            + ++        N++  +  + 
Sbjct: 110 -DPDNETYK---SNLKIAELKLR 128

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.1 bits (115), Expect = 8e-06
 Identities = 44/292 (15%), Positives = 90/292 (30%), Gaps = 65/292 (22%)

Query: 863  LDLSHNLLGNGTMEKLQQFFISSCQNYVDLT-LDLHCNRFGPTTLFQICECPVLFTRLGV 921
             +L    + +            +      +  +  + +     ++  I         +  
Sbjct: 29   DNLKKKSVTD----------AVTQNELNSIDQIIANNSDI--KSVQGIQY----LPNVTK 72

Query: 922  LNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIG 981
            L L+GN+LTD         L N K L  L ++   +          +L     L  L + 
Sbjct: 73   LFLNGNKLTDIKP------LANLKNLGWLFLDENKVKD------LSSLKDLKKLKSLSLE 120

Query: 982  YNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNL 1041
                   N I+++   L  L     L L   K++      +  L++ + L  L L    +
Sbjct: 121  ------HNGISDI-NGLVHLPQLESLYLGNNKITD-----ITVLSRLTKLDTLSLEDNQI 168

Query: 1042 GSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKE 1101
                 L  +  L         L LS   +    +       +L      L L     + +
Sbjct: 169  SDIVPLAGLTKL-------QNLYLSKNHISD--LRALAGLKNLD----VLELFSQECLNK 215

Query: 1102 GANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADN 1153
              N  ++L++     +K            G L   + +S++   E+ N+  +
Sbjct: 216  PINHQSNLVVPNT--VK---------NTDGSLVTPEIISDDGDYEKPNVKWH 256

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.8 bits (117), Expect = 9e-06
 Identities = 59/396 (14%), Positives = 107/396 (27%), Gaps = 117/396 (29%)

Query: 803  LMKLYIECCKELSEAPN-MKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKTVA 861
            L  L   C   L+E P   + LK L +                 +++ L   L       
Sbjct: 93   LESLVASCNS-LTELPELPQSLKSLLVDN-----------NNLKALSDLPPLLEY----- 135

Query: 862  LLDLSHNLLGN----GTMEKLQQFFISSCQ------NYVDLT-LDLHCNRFGPTTLFQIC 910
             L +S+N L           L+   + +            L  +    N+     L ++ 
Sbjct: 136  -LGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL--EELPELQ 192

Query: 911  ECPVLFTRLGVLNLSGNRLT------------DACGSYLSTI--LKNCKVLYSLNIENCS 956
                    L  +    N L              A  + L  +  L+N   L ++  +N  
Sbjct: 193  NL----PFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNL 248

Query: 957  ITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSK 1016
            + +     + D      +L  L +  N       +T+L     +L            LS+
Sbjct: 249  LKT-----LPDLPP---SLEALNVRDNY------LTDLPELPQSLTFLDVSENIFSGLSE 294

Query: 1017 PVVDRLCQLAKTSC-LTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLES--T 1073
             +   L  L  +S  +  L     +L                    +L++S   L     
Sbjct: 295  -LPPNLYYLNASSNEIRSLCDLPPSL-------------------EELNVSNNKLIELPA 334

Query: 1074 CIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQL------ 1127
               +             L    N +       +  L  N    LK L +    L      
Sbjct: 335  LPPRLE----------RLIASFNHL-----AEVPELPQN----LKQLHVEYNPLREFPDI 375

Query: 1128 -----GLAGVLQLIKALSENDTLEELNLADNASKEL 1158
                  L     L +       L++L++  N  +E 
Sbjct: 376  PESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREF 411

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.5 bits (111), Expect = 4e-05
 Identities = 50/334 (14%), Positives = 98/334 (29%), Gaps = 87/334 (26%)

Query: 863  LDLSHNLL------GNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLF 916
               + +        GNG   ++    +  C +     L+L+           +   P L 
Sbjct: 39   YYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL--------GLSSLPELP 90

Query: 917  TRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLA 976
              L  L  S N LT+     L  + ++ K L   N    +++                L 
Sbjct: 91   PHLESLVASCNSLTE-----LPELPQSLKSLLVDNNNLKALSDLP-----------PLLE 134

Query: 977  QLCIGYNS----P------------VTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVD 1020
             L +  N     P            V  N++  L     +L+    +     +L +  + 
Sbjct: 135  YLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLE---FIAAGNNQLEE--LP 189

Query: 1021 RLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTA 1080
             L  L     LT +     +L         + L         +      LE   + +   
Sbjct: 190  ELQNLPF---LTAIYADNNSL---------KKLPDLPLSLESIVAGNNILEE--LPELQN 235

Query: 1081 SVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALS 1140
               L      +    N +           L +    L+ L +          L  +  L 
Sbjct: 236  LPFLT----TIYADNNLL---------KTLPDLPPSLEALNVRDNY------LTDLPELP 276

Query: 1141 ENDTLEELNLADNASKELT-LQQNLSSVNSENLQ 1173
            ++  L  L++++N    L+ L  NL  +N+ + +
Sbjct: 277  QS--LTFLDVSENIFSGLSELPPNLYYLNASSNE 308

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.8 bits (116), Expect = 1e-05
 Identities = 70/342 (20%), Positives = 108/342 (31%), Gaps = 77/342 (22%)

Query: 852  NALHTHKTVALLDLSHNLLGN------GTMEKLQQFFISSCQ----------NYVDLT-L 894
              L + + V LL+L+   +             +Q+ ++              N   LT L
Sbjct: 69   ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128

Query: 895  DLHCNRFG--PTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNI 952
             L  N     P  +F          +L  L++S N L            +    L +L +
Sbjct: 129  VLERNDLSSLPRGIFHNT------PKLTTLSMSNNNLE----RIEDDTFQATTSLQNLQL 178

Query: 953  ENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGL 1012
             +  +T          L    +L    + YN           L  L    +  EL+ +  
Sbjct: 179  SSNRLTH-------VDLSLIPSLFHANVSYNL----------LSTLAIPIAVEELDASHN 221

Query: 1013 KLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLES 1072
             ++        +      LT L L   NL     L     L       V++DLSY  LE 
Sbjct: 222  SINVVRGPVNVE------LTILKLQHNNLTDTAWLLNYPGL-------VEVDLSYNELEK 268

Query: 1073 TCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGV 1132
               H F     L      L +  N ++    N     +      LKVL LS   L     
Sbjct: 269  IMYHPFVKMQRLE----RLYISNNRLVA--LNLYGQPIPT----LKVLDLSHNHL----- 313

Query: 1133 LQLIKALSENDTLEELNLADNASKELTLQ--QNLSSVN-SEN 1171
            L + +   + D LE L L  N+   L L     L ++  S N
Sbjct: 314  LHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHN 355

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.3 bits (115), Expect = 1e-05
 Identities = 57/433 (13%), Positives = 118/433 (27%), Gaps = 92/433 (21%)

Query: 842  LQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLT-LDLHCNR 900
            + +I      N            ++ +         L+Q   S  Q+  ++  LDL  N 
Sbjct: 2    IHEIK--QNGNRYKI------EKVTDS--------SLKQALASLRQSAWNVKELDLSGNP 45

Query: 901  FG--PTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSIT 958
                              T+L +LNLS N L +        + ++   L +L++ N  + 
Sbjct: 46   LSQISAADLAPF------TKLELLNLSSNVLYE-----TLDL-ESLSTLRTLDLNNNYVQ 93

Query: 959  SRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPV 1018
                      L    ++  L    N+      I+ +       +    + L   K++   
Sbjct: 94   E---------LLVGPSIETLHAANNN------ISRV--SCSRGQGKKNIYLANNKITMLR 136

Query: 1019 VDRLCQLAKTSCLTHLMLGC---TNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCI 1075
                   ++   + +L L       +         ++L         L+L Y  +     
Sbjct: 137  DLDEGCRSR---VQYLDLKLNEIDTVNFAELAASSDTL-------EHLNLQYNFIYD--- 183

Query: 1076 HKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQL 1135
                  V     +  L+L  N +         S        +  + L   +L       +
Sbjct: 184  --VKGQVVFAK-LKTLDLSSNKL-AFMGPEFQSAAG-----VTWISLRNNKLV-----LI 229

Query: 1136 IKALSENDTLEELNLADNASKELTLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFA 1195
             KAL  +  LE  +L  N                 +     +    V+K+      G   
Sbjct: 230  EKALRFSQNLEHFDLRGN---------GFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ-- 278

Query: 1196 MNTDCNDLEVADSEDDKIRVESAASGFDNSCTSSCQKNSSFECQF--VQELSSAIGMAKP 1253
               +C    +          +  A   D       ++++    Q    + L         
Sbjct: 279  NEEECTVPTLGHYGAYCCE-DLPAPFADRLIALKRKEHALLSGQGSETERLECERENQAR 337

Query: 1254 LQLLDLSNNGFST 1266
             + +D     + T
Sbjct: 338  QREIDALKEQYRT 350

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.5 bits (105), Expect = 2e-04
 Identities = 36/402 (8%), Positives = 96/402 (23%), Gaps = 90/402 (22%)

Query: 813  ELSEAPNMKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGN 872
             L E  +++ L  L        + ++   +Q++    +  ++ T      L  ++N +  
Sbjct: 69   VLYETLDLESLSTL------RTLDLNNNYVQEL---LVGPSIET------LHAANNNISR 113

Query: 873  ---GTMEKLQQFFISSCQNYVDLTLDLHCNRFG--PTTLFQICECPVLFTRLGVLNLSGN 927
                  +  +              + L  N+                  +R+  L+L  N
Sbjct: 114  VSCSRGQGKKN-------------IYLANNKITMLRDLDEG------CRSRVQYLDLKLN 154

Query: 928  RLTDACGSYLSTILKNCKVLYSLNIENCSITSRT-----------------IQKVADALG 970
             +     + L+        L  LN++   I                     +  +     
Sbjct: 155  EIDTVNFAELAASSDT---LEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQ 211

Query: 971  AESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNG---------------LKLS 1015
            + + +  + +  N       +  +   L   ++    +L G                ++ 
Sbjct: 212  SAAGVTWISLRNNK------LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265

Query: 1016 KPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCI 1075
                  + +L   +     +    + G+     L      R     + + +    + +  
Sbjct: 266  TVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSET 325

Query: 1076 HKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQL 1135
             +            E++                           L   K  L      Q+
Sbjct: 326  ERLECERENQARQREIDALKEQYRTVIDQVTLRKQA-----KITLEQKKKAL----DEQV 376

Query: 1136 IKALSENDTLEELNLADNASKELT-LQQNLSSVNSENLQPAL 1176
                  +  L+          EL    +  S +         
Sbjct: 377  SNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKR 418

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.3 bits (113), Expect = 2e-05
 Identities = 45/298 (15%), Positives = 90/298 (30%), Gaps = 70/298 (23%)

Query: 862  LLDLSHNLLGNGTMEKLQQFFISSCQNYVDLT-LDLHCNRFG--PTTLFQICECPVLFTR 918
            +  ++ +         L+Q   S  Q+  ++  LDL  N                   T+
Sbjct: 14   IEKVTDS--------SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF------TK 59

Query: 919  LGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQL 978
            L +LNLS N L +        + ++   L +L++ N  +           L    ++  L
Sbjct: 60   LELLNLSSNVLYE-----TLDL-ESLSTLRTLDLNNNYVQE---------LLVGPSIETL 104

Query: 979  CIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGC 1038
                N+      I+ +       +    + L   K++          ++   + +L L  
Sbjct: 105  HAANNN------ISRV--SCSRGQGKKNIYLANNKITMLRDLDEGCRSR---VQYLDLKL 153

Query: 1039 ---TNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGG 1095
                 +         ++L         L+L Y  +           V     +  L+L  
Sbjct: 154  NEIDTVNFAELAASSDTL-------EHLNLQYNFIYD-----VKGQVVFAK-LKTLDLSS 200

Query: 1096 NPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADN 1153
            N +         S        +  + L   +L       + KAL  +  LE  +L  N
Sbjct: 201  NKL-AFMGPEFQSAAG-----VTWISLRNNKLV-----LIEKALRFSQNLEHFDLRGN 247

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 47.6 bits (113), Expect = 2e-05
 Identities = 30/168 (17%), Positives = 57/168 (33%), Gaps = 27/168 (16%)

Query: 163 KEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDG------RSRLHHNLG 216
            E        G +  +    ++A     + +     E    +++       R   H NL 
Sbjct: 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203

Query: 217 NVYMELRMWDKSREHIEQDIIICKK-IEHCQGEAKGYINLGELHYRVQKYDEAILCYQKA 275
             +++L+ +  + E        C K +E      KG    GE H  V  ++ A   +QK 
Sbjct: 204 MCHLKLQAFSAAIES-------CNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKV 256

Query: 276 LNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNM 323
           L L  + +            +   ++ I      +++    KKL  NM
Sbjct: 257 LQLYPNNKA-------AKTQLAVCQQRI------RRQLAREKKLYANM 291

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 60/316 (18%), Positives = 105/316 (33%), Gaps = 69/316 (21%)

Query: 863  LDLSHNLLGN------GTMEKLQQFFISSCQ----------NYVDL-TLDLHCNRFG--P 903
            LDL  N +         +   L++  ++             N  +L TL L  NR    P
Sbjct: 37   LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP 96

Query: 904  TTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQ 963
              +F         + L  L++S N++       L  + ++   L SL + +  +    I 
Sbjct: 97   LGVFTG------LSNLTKLDISENKIV----ILLDYMFQDLYNLKSLEVGDNDLVY--IS 144

Query: 964  KVADALGAESTLAQLCIGYNSPVTGNAITNLLVK-LDTLKSFSELNLNGLKLSKPVVDRL 1022
                A    ++L QL +   +      +T++  + L  L     L L  L ++     R 
Sbjct: 145  --HRAFSGLNSLEQLTLEKCN------LTSIPTEALSHLHGLIVLRLRHLNINAI---RD 193

Query: 1023 CQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHK--FTA 1080
                +   L  L +          L  +            L +++C L +  +       
Sbjct: 194  YSFKRLYRLKVLEISHWPY-----LDTMTPNCLYGLNLTSLSITHCNLTA--VPYLAVRH 246

Query: 1081 SVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLI--KA 1138
             V L      LNL  NPI     + L  LL      L+ + L   QL       ++   A
Sbjct: 247  LVYLR----FLNLSYNPISTIEGSMLHELLR-----LQEIQLVGGQL------AVVEPYA 291

Query: 1139 LSENDTLEELNLADNA 1154
                + L  LN++ N 
Sbjct: 292  FRGLNYLRVLNVSGNQ 307

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 42/245 (17%), Positives = 82/245 (33%), Gaps = 50/245 (20%)

Query: 812  KELSEAPNMKLLKKLYISEVEDEVIVSECELQ-----DISVTPL--LNALHTHKTVALLD 864
              +   P +    K+   +      V++ +L          T +  +  +     +  L+
Sbjct: 10   NVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLE 69

Query: 865  LSHNLLGN----GTMEKLQQFFISSCQ--------NYVDLT-LDLHCNRFGPTTLFQICE 911
            L  N + +      + K+ +  +S               +  LDL   +   T +  +  
Sbjct: 70   LKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQI--TDVTPLAG 127

Query: 912  CPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGA 971
                 + L VL L  N++T+         L     L  L+I N  ++          L  
Sbjct: 128  L----SNLQVLYLDLNQITNISP------LAGLTNLQYLSIGNAQVSD------LTPLAN 171

Query: 972  ESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCL 1031
             S L  L    N       I++ +  L +L +  E++L   ++S      +  LA TS L
Sbjct: 172  LSKLTTLKADDNK------ISD-ISPLASLPNLIEVHLKNNQISD-----VSPLANTSNL 219

Query: 1032 THLML 1036
              + L
Sbjct: 220  FIVTL 224

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 40/238 (16%), Positives = 75/238 (31%), Gaps = 50/238 (21%)

Query: 916  FTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTL 975
                  +    + +TD      +    +   + +L+     +T+       + +   + L
Sbjct: 18   LANAIKIAAGKSNVTD------TVTQADLDGITTLSAFGTGVTT------IEGVQYLNNL 65

Query: 976  AQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLM 1035
              L +  N       IT+L   L  L   +EL L+G  L    V  +  L     +  L 
Sbjct: 66   IGLELKDNQ------ITDLAP-LKNLTKITELELSGNPLKN--VSAIAGLQS---IKTLD 113

Query: 1036 LGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGG 1095
            L  T +     L  + +L         L L    + +  I       +L      L++G 
Sbjct: 114  LTSTQITDVTPLAGLSNL-------QVLYLDLNQITN--ISPLAGLTNLQ----YLSIGN 160

Query: 1096 NPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADN 1153
              +       L  L    +  L  L     ++        I  L+    L E++L +N
Sbjct: 161  AQVSD-----LTPLANLSK--LTTLKADDNKI------SDISPLASLPNLIEVHLKNN 205

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 41/258 (15%), Positives = 90/258 (34%), Gaps = 58/258 (22%)

Query: 719 DDDLIHLEVHSCICDDKLDIESLKVELACLYYLQLPKEKISKGLLPIIQHMKYGGRSLES 778
           D  L +    +    +  D  +   +L  +  L      ++   +  +Q++     +L  
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQA-DLDGITTLSAFGTGVTT--IEGVQYLN----NLIG 67

Query: 779 FDAFKDQLGKDIIEVSIDGWVQKRLMKLYIECCK--ELSEAPNMKLLKKLYISEVEDEVI 836
            +   +Q+  D+  +        ++ +L +       +S    ++ +K L ++       
Sbjct: 68  LELKDNQI-TDLAPLK----NLTKITELELSGNPLKNVSAIAGLQSIKTLDLTS------ 116

Query: 837 VSECELQDISVTPLLNALHTHKTVALLDLSHNLLGN----GTMEKLQQFFISSCQ----- 887
               ++ D++    L+ L        L L  N + N      +  LQ   I + Q     
Sbjct: 117 ---TQITDVTPLAGLSNLQV------LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT 167

Query: 888 ---NYVDLT-LDLHCNRFGPTTLFQICECPVL--FTRLGVLNLSGNRLTDACGSYLSTIL 941
              N   LT L    N        +I +   L     L  ++L  N+++D       + L
Sbjct: 168 PLANLSKLTTLKADDN--------KISDISPLASLPNLIEVHLKNNQISDV------SPL 213

Query: 942 KNCKVLYSLNIENCSITS 959
            N   L+ + + N +IT+
Sbjct: 214 ANTSNLFIVTLTNQTITN 231

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.4 bits (113), Expect = 3e-05
 Identities = 55/249 (22%), Positives = 89/249 (35%), Gaps = 53/249 (21%)

Query: 915  LFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAEST 974
            + T   +LNL  N++            K+ + L  L +    I   TI+    A    + 
Sbjct: 62   ISTNTRLLNLHENQIQ----IIKVNSFKHLRHLEILQLSRNHIR--TIE--IGAFNGLAN 113

Query: 975  LAQLCIGYNSPVTGNAITNL----LVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSC 1030
            L  L +  N       +T +     V L  LK   EL L    +         ++     
Sbjct: 114  LNTLELFDNR------LTTIPNGAFVYLSKLK---ELWLRNNPIESIPSYAFNRIPS--- 161

Query: 1031 LTHLMLGCTN-LGS--DGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHG 1087
            L  L LG    L    +G+ + + +L         L+L+ C L    I   T  + L   
Sbjct: 162  LRRLDLGELKRLSYISEGAFEGLSNL-------RYLNLAMCNLRE--IPNLTPLIKLD-- 210

Query: 1088 ILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLI--KALSENDTL 1145
              EL+L GN +      +   L+      L+ L + + Q      +Q+I   A     +L
Sbjct: 211  --ELDLSGNHLSAIRPGSFQGLMH-----LQKLWMIQSQ------IQVIERNAFDNLQSL 257

Query: 1146 EELNLADNA 1154
             E+NLA N 
Sbjct: 258  VEINLAHNN 266

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 14/126 (11%), Positives = 39/126 (30%), Gaps = 23/126 (18%)

Query: 179 LDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIII 238
           L    +A  +  + +               +  +  LG+ +  L  + K+   +   +  
Sbjct: 3   LGLEAQAVPYYEKAIAS------GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGV-- 54

Query: 239 CKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIET 298
               +         +    + Y + +Y++ +    K +                D+ I++
Sbjct: 55  ----KQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSD-----------DETIQS 99

Query: 299 VKKAIE 304
            K+AI 
Sbjct: 100 YKQAIL 105

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 26/114 (22%)

Query: 164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELR 223
           +  + +  +G     L    +A+  L  G++                L      V   L 
Sbjct: 25  DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ---------FPNHQALRVFYAMVLYNLG 75

Query: 224 MWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALN 277
            +++  E + + I      E                  +Q Y +AIL Y   L+
Sbjct: 76  RYEQGVELLLKIIAETSDDET-----------------IQSYKQAILFYADKLD 112

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 55/301 (18%), Positives = 84/301 (27%), Gaps = 85/301 (28%)

Query: 863  LDLSHNLLGNGTMEKLQQFFISSCQNYVDLT-LDLHCNRFGPTTLFQICECPVLF---TR 918
            L+L  N        KLQ            LT L L  N      L     C       T 
Sbjct: 33   LELESN--------KLQSLPHGVFDKLTQLTKLSLSSNG-----LSFKGCCSQSDFGTTS 79

Query: 919  LGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQL 978
            L  L+LS N +       +S+     + L  L+ ++ ++           +   S    L
Sbjct: 80   LKYLDLSFNGVIT-----MSSNFLGLEQLEHLDFQHSNLKQ---------MSEFSVFLSL 125

Query: 979  CIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGC 1038
                          NL+           L+++              L+    L  L +  
Sbjct: 126  -------------RNLI----------YLDISHTHTRVAFNGIFNGLSS---LEVLKMAG 159

Query: 1039 TNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPI 1098
             +   +     +  +F+  +    LDLS C LE      F +  SL      LN+  N  
Sbjct: 160  NSFQEN----FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV----LNMSHNNF 211

Query: 1099 MKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSEN------DTLEELNLAD 1152
                      L       L+VL  S            I    +        +L  LNL  
Sbjct: 212  FSLDTFPYKCLNS-----LQVLDYSLNH---------IMTSKKQELQHFPSSLAFLNLTQ 257

Query: 1153 N 1153
            N
Sbjct: 258  N 258

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.8 bits (111), Expect = 4e-05
 Identities = 47/293 (16%), Positives = 95/293 (32%), Gaps = 52/293 (17%)

Query: 813  ELSEAPNMKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTH-KTVALLDLSHNLLG 871
            E +    +++L+ ++ + V     +S  +LQ        +   T  K +++  +  ++ G
Sbjct: 231  ETTWNSFIRILQLVWHTTVW-YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG 289

Query: 872  ---NGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNR 928
               +   E      I            +   R                +    L+ S N 
Sbjct: 290  FPQSYIYEIFSNMNI--------KNFTVSGTRMVHMLCPSKI------SPFLHLDFSNNL 335

Query: 929  LTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTG 988
            LT      +     +   L +L ++   +    + K+A+      +L QL I  NS    
Sbjct: 336  LT----DTVFENCGHLTELETLILQMNQLKE--LSKIAEMTTQMKSLQQLDISQNS---- 385

Query: 989  NAITNLL--VKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGS--D 1044
              ++           KS   LN++   L+  +   L        +  L L    + S   
Sbjct: 386  --VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-----PPRIKVLDLHSNKIKSIPK 438

Query: 1045 GSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNP 1097
              ++L  +L        +L+++   L+S     F    SL      + L  NP
Sbjct: 439  QVVKLE-ALQ-------ELNVASNQLKSVPDGIFDRLTSLQK----IWLHTNP 479

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 45.7 bits (108), Expect = 5e-05
 Identities = 31/173 (17%), Positives = 63/173 (36%), Gaps = 13/173 (7%)

Query: 205 DDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKK-IEHCQGEAKGYINLGELHYRVQ 263
           +   +  + N    Y++++  +++      D   C++ +E      K +  LG+    ++
Sbjct: 34  NPLVAVYYTNRALCYLKMQQPEQA----LAD---CRRALELDGQSVKAHFFLGQCQLEME 86

Query: 264 KYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNM 323
            YDEAI   Q+A +LA+  E        I   +   KK      E ++  Q  +    + 
Sbjct: 87  SYDEAIANLQRAYSLAK--EQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESEL---HS 141

Query: 324 IIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDK 376
            + +  + ER+  L++        E    I A     E    K     +    
Sbjct: 142 YLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFS 194

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.2 bits (110), Expect = 6e-05
 Identities = 60/337 (17%), Positives = 108/337 (32%), Gaps = 71/337 (21%)

Query: 858  KTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLT-LDLHCNRFGPTTLFQICECPVLF 916
             +              + E+L             LT LD H +    T +  I +     
Sbjct: 21   ASEVAAAFEMQATDTISEEQLAT-----------LTSLDCHNSSI--TDMTGIEK----L 63

Query: 917  TRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLA 976
            T L  L  + N +T      L   L     L  L  ++  +T+  +  +       + L 
Sbjct: 64   TGLTKLICTSNNITT-----LD--LSQNTNLTYLACDSNKLTNLDVTPL-------TKLT 109

Query: 977  QLCIGYNS----PVTGNAI-------TNLLVKLD--TLKSFSELNLNGLK-LSKPVVDRL 1022
             L    N      V+ N +        N L ++D       +EL+ +  K ++K  V   
Sbjct: 110  YLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQ 169

Query: 1023 CQLAKTSC----LTHLMLG-CTNLG----SDGSLQLVESLFSRAQESVKLDLSYCGLEST 1073
             QL    C    +T L +     L        ++  ++   ++  +   LD S   L   
Sbjct: 170  TQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEI 227

Query: 1074 CIHKFTASVSLVHGILELNLGGNPIMKEGANALASL--LMNPQCCLKVLVLSKCQ----L 1127
             +   T        +   +   NP+ +   + L+ L  L   Q  L  + L+        
Sbjct: 228  DVTPLTQ-------LTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF 280

Query: 1128 GLAGVLQLIK-ALSENDTLEELNLADNASKELTLQQN 1163
               G  ++ +  ++ N  L  L+       EL L QN
Sbjct: 281  QAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQN 317

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 43.6 bits (103), Expect = 9e-05
 Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 13/95 (13%)

Query: 211 LHHNLGNVYMELRMWDKSREHIEQDIIICKK-IEHCQGEAKGYINLGELHYRVQKYDEAI 269
              N    Y      +K+     +D    +         +K +  LG   + +  Y  A 
Sbjct: 47  YLSNRAAAYSASGQHEKA----AED---AELATVVDPKYSKAWSRLGLARFDMADYKGAK 99

Query: 270 LCYQKALNLAQSMEDEDALASQIDQNIETVKKAIE 304
             Y+K +       + +  +  + + +ET K+ IE
Sbjct: 100 EAYEKGIEA-----EGNGGSDAMKRGLETTKRKIE 129

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.2 bits (107), Expect = 1e-04
 Identities = 36/233 (15%), Positives = 70/233 (30%), Gaps = 30/233 (12%)

Query: 813  ELSEAPNMKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTH-KTVALLDLSHNLLG 871
            E +   ++KL +  +   VE  + +    + +           T  K++ +  + + +  
Sbjct: 260  ETTWKCSVKLFQFFWPRPVE-YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF- 317

Query: 872  NGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTD 931
                   ++   S         L +    F               +    LN + N  TD
Sbjct: 318  ----LFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSP------SSFTFLNFTQNVFTD 367

Query: 932  ACGSYLSTILKNCKVLYSLNIENCSITS-RTIQKVADALGAESTLAQLCIGYNSPVTGNA 990
                   ++ + C  L  L          +   KVA      S+L  L +  NS  +  A
Sbjct: 368  -------SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH-A 419

Query: 991  ITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGS 1043
                    +++     LNL+   L+  V   L        +  L L    + S
Sbjct: 420  YDRTCAWAESIL---VLNLSSNMLTGSVFRCL-----PPKVKVLDLHNNRIMS 464

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 55/396 (13%), Positives = 103/396 (26%), Gaps = 106/396 (26%)

Query: 801  KRLMKLYIECCKELSEAPN-MKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKT 859
                 LY +    L    + +   ++ Y                D +             
Sbjct: 12   SGRENLYFQGSTALRPYHDVLSQWQRHY--------------NADRNRWHSAWRQANSNN 57

Query: 860  VALLDLSHNLL-------GNGTMEKLQQFFISSCQ---------NYVDLT-LDLHCNRFG 902
              +   +   L        + T        + S               L  + +      
Sbjct: 58   PQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM 117

Query: 903  --PTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSR 960
              P T+ Q       F  L  L L+ N L       L   + +   L  L+I  C     
Sbjct: 118  ELPDTMQQ-------FAGLETLTLARNPLRA-----LPASIASLNRLRELSIRACP---- 161

Query: 961  TIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSK-PVV 1019
             + ++ + L +                    T+   +   L +   L L    +   P  
Sbjct: 162  ELTELPEPLAS--------------------TDASGEHQGLVNLQSLRLEWTGIRSLP-- 199

Query: 1020 DRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFT 1079
              +  L     L  L +  + L +     L  ++     +  +LDL  C    T +  + 
Sbjct: 200  ASIANL---QNLKSLKIRNSPLSA-----LGPAI-HHLPKLEELDLRGC----TALRNYP 246

Query: 1080 ASVSLVHGILELNLGGNPIMKEGANALASLLMNPQ-----CCLKVLVLSKCQLGLAGVLQ 1134
                    +  L L          + L +L   P        L+ L L  C   L+ +  
Sbjct: 247  PIFGGRAPLKRLILKDC-------SNLLTL---PLDIHRLTQLEKLDLRGCV-NLSRLPS 295

Query: 1135 LIKALSENDTLEELNLADNASKELTLQQNLSSVNSE 1170
            LI  L        + +  +   +L  Q    +  +E
Sbjct: 296  LIAQLPA---NCIILVPPHLQAQL-DQHRPVARPAE 327

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 37/247 (14%), Positives = 67/247 (27%), Gaps = 45/247 (18%)

Query: 916  FTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTL 975
                   NL    +TD          K    + + N +N +I S         +   + L
Sbjct: 18   LANAVKQNLGKQSVTDLVS------QKELSGVQNFNGDNSNIQS------LAGMQFFTNL 65

Query: 976  AQLCIGYNSPVTGNAITNL--LVKLD-------TLKSFSELNLNGLKLSKPVVDRLCQLA 1026
             +L + +N     + + +L  L +L         L       L+ L L    +     L 
Sbjct: 66   KELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSLI 125

Query: 1027 KTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVH 1086
                L  L +    L S   L  +  L         LDL    + +      T    +  
Sbjct: 126  HLKNLEILSIRNNKLKSIVMLGFLSKL-------EVLDLHGNEITN--TGGLTRLKKVN- 175

Query: 1087 GILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLE 1146
                ++L G   + E           P      L ++       G       +S   +  
Sbjct: 176  ---WIDLTGQKCVNE-----------PVKYQPELYITNTVKDPDGRWISPYYISNGGSYV 221

Query: 1147 ELNLADN 1153
            +  +   
Sbjct: 222  DGCVLWE 228

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.2 bits (105), Expect = 2e-04
 Identities = 50/323 (15%), Positives = 102/323 (31%), Gaps = 65/323 (20%)

Query: 862  LLDLSHNLLGNGTMEKLQQFFISSCQNYVDLT-LDLHCNRFGPTTLFQICECPVLF---T 917
            LLDL +N +   +  +   F     +    L  L L  N+   + +         F    
Sbjct: 58   LLDLQNNDI---SELRKDDF-----KGLQHLYALVLVNNKI--SKIH-----EKAFSPLR 102

Query: 918  RLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQ 977
            +L  L +S N L +        +  +   L  L I +  I    + K          +  
Sbjct: 103  KLQKLYISKNHLVEI----PPNLPSS---LVELRIHDNRIRK--VPK--GVFSGLRNMNC 151

Query: 978  LCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLG 1037
            + +G N       + N   +      F  L LN L++S+  +  + +    + L  L L 
Sbjct: 152  IEMGGNP------LENSGFEPGA---FDGLKLNYLRISEAKLTGIPKDLPET-LNELHLD 201

Query: 1038 CTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHK--FTASVSLVHGILELNLGG 1095
               + +     +      R  +  +L L +  +    I     +   +L     EL+L  
Sbjct: 202  HNKIQA-----IELEDLLRYSKLYRLGLGHNQI--RMIENGSLSFLPTLR----ELHLDN 250

Query: 1096 NPIMKEGANALASLLMNPQCCLKVLVLSKCQLGL--AGVLQLIKALSENDTLEELNLADN 1153
            N +       L  L +     L+V+ L    +          +    +      ++L +N
Sbjct: 251  NKL-SRVPAGLPDLKL-----LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN 304

Query: 1154 ASKELTLQ----QNLSSVNSENL 1172
                  +Q    + ++   +   
Sbjct: 305  PVPYWEVQPATFRCVTDRLAIQF 327

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 25/118 (21%), Positives = 39/118 (33%), Gaps = 33/118 (27%)

Query: 863 LDLSHNLL--------GNGTMEKLQQFFISSCQ----------NYVDLT-LDLHCNRFG- 902
           LDLS N                 LQ+ ++ +            N  +L  L L  N    
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432

Query: 903 --PTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSIT 958
             P++L          ++L  L L  N L    G  +   L   K L +L ++   +T
Sbjct: 433 TIPSSLGS-------LSKLRDLKLWLNMLE---GE-IPQELMYVKTLETLILDFNDLT 479

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.4 bits (103), Expect = 5e-04
 Identities = 51/265 (19%), Positives = 91/265 (34%), Gaps = 63/265 (23%)

Query: 917  TRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLA 976
             ++  ++LS   L     + +S+ L +   L SL + N  I   ++          ++L 
Sbjct: 50   DKVTSIDLSSKPLNVGFSA-VSSSLLSLTGLESLFLSNSHING-SV----SGFKCSASLT 103

Query: 977  QLCIGYNS-----PVTGNAITNL--LVKLD----------------TLKSFSELNLNGLK 1013
             L +  NS       T  ++ +   L  L+                 L S   L+L+   
Sbjct: 104  SLDLSRNSLSGPVT-TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162

Query: 1014 LSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLEST 1073
            +S   V           L HL +    +  D  +    +L         LD+S     + 
Sbjct: 163  ISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNL-------EFLDVSSNNFSTG 215

Query: 1074 CIHKFTASVSLVHGILELNLGGNPIMKEGA--NALASLLMNPQCCLKVLVLSKCQLGLAG 1131
             I       +L H    L++ GN +   G    A+++        LK+L +S  Q    G
Sbjct: 216  -IPFLGDCSALQH----LDISGNKL--SGDFSRAISTC-----TELKLLNISSNQFV--G 261

Query: 1132 VL---QLIKALSENDTLEELNLADN 1153
             +    L         L+ L+LA+N
Sbjct: 262  PIPPLPLKS-------LQYLSLAEN 279

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 42.2 bits (98), Expect = 2e-04
 Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 10/153 (6%)

Query: 162 LKEYIDAHNNI--GMLQMELDNLEEAKKFLIRGLEICNE---EEVSEDDDGRSRLHHNLG 216
           LKE + A+  +     Q+     +EA     R +EI +    EE  +     +  H  L 
Sbjct: 5   LKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLA 64

Query: 217 NVYMELRMWDKSREHIEQDI-IICKKIEHCQGEAKGYI----NLGELHYRVQKYDEAILC 271
                LR +D++    ++ +    ++ E  Q E K +I    +       + +  EA+  
Sbjct: 65  EALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPE 124

Query: 272 YQKALNLAQSMEDEDALASQIDQNIETVKKAIE 304
           ++K + + +  + E     ++ +        + 
Sbjct: 125 FKKVVEMIEERKGETPGKERMMEVAIDRIAQLG 157

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 21/154 (13%), Positives = 46/154 (29%), Gaps = 31/154 (20%)

Query: 181 NLEEAKKFLIRGLEICN---------EEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREH 231
           + +EA       L   +         E E  E D     L+ N+   Y+ +    ++ E 
Sbjct: 26  DYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEET 85

Query: 232 IEQDIIICKK-IEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALAS 290
                    + ++  +   K      +      K DEA    +  L    +         
Sbjct: 86  -------SSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA--------- 129

Query: 291 QIDQNIETVKKAIEVMDELKKEEQNL-KKLTRNM 323
                   V + ++++ E + E++   +     M
Sbjct: 130 ----AASVVAREMKIVTERRAEKKADSRVTYSKM 159

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.7 bits (103), Expect = 4e-04
 Identities = 60/326 (18%), Positives = 102/326 (31%), Gaps = 94/326 (28%)

Query: 832  EDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVD 891
                   E   +   V  +   L+    V  L++  + L       L     +       
Sbjct: 16   RRAAPAEESRGRAAVVQKMRACLNNGNAV--LNVGESGL-----TTLPDCLPAHIT---- 64

Query: 892  LTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLN 951
             TL +  N         +   P L   L  L +SGN+LT      L  +      L   +
Sbjct: 65   -TLVIPDN--------NLTSLPALPPELRTLEVSGNQLTS-----LPVLPPGLLELSIFS 110

Query: 952  IENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNG 1011
                 + +             S L +L I  N       +T+L V    L+   EL+++ 
Sbjct: 111  NPLTHLPALP-----------SGLCKLWIFGNQ------LTSLPVLPPGLQ---ELSVSD 150

Query: 1012 LKLSKPVVDRLCQLAKTSC----LTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSY 1067
             +L+  +     +L K       LT L +  + L                    +L +S 
Sbjct: 151  NQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGL-------------------QELSVSD 190

Query: 1068 CGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQL 1127
              L S          +L   + +L    N +      +L +L       LK L++S  +L
Sbjct: 191  NQLASLP--------TLPSELYKLWAYNNRL-----TSLPALPSG----LKELIVSGNRL 233

Query: 1128 GLAGVLQLIKALSENDTLEELNLADN 1153
                   L    SE   L+EL ++ N
Sbjct: 234  T-----SLPVLPSE---LKELMVSGN 251

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 43.1 bits (101), Expect = 5e-04
 Identities = 20/153 (13%), Positives = 55/153 (35%), Gaps = 31/153 (20%)

Query: 181 NLEEAKKFLIRGLEICNEEEVSEDDDG--------RSRLHHNLGNVYMELRMWDKSREHI 232
            LEEA +     +    ++ + +            ++  H N+    ++L+ +D++  H 
Sbjct: 194 KLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGH- 252

Query: 233 EQDIIICKK-IEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQ 291
                 C   +   +   K     G+    + + D A   ++KA               +
Sbjct: 253 ------CNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQ--------------K 292

Query: 292 IDQNIETVKKAIEVMDELKKEE-QNLKKLTRNM 323
              + + +++ +  + E +K   Q  K++ + +
Sbjct: 293 YAPDDKAIRRELRALAEQEKALYQKQKEMYKGI 325

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 7/30 (23%), Positives = 16/30 (53%)

Query: 249 AKGYINLGELHYRVQKYDEAILCYQKALNL 278
            + Y  +G  + ++  + +A+  YQ A+ L
Sbjct: 35  DEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 8/97 (8%), Positives = 26/97 (26%), Gaps = 9/97 (9%)

Query: 182 LEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKK 241
                  +  G  + +   + +D        ++    +      +++        I    
Sbjct: 12  STAVIDAINSGATLKDINAIPDDM---MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY 68

Query: 242 IEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNL 278
                      + L  ++   +++ +A   Y  A  L
Sbjct: 69  ------NVDYIMGLAAIYQIKEQFQQAADLYAVAFAL 99

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1313
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	3e-17
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	1e-08
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	0.003
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-15
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	2e-10
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	5e-08
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	5e-08
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	7e-06
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	7e-06
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	1e-07
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	2e-07
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	1e-06
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	3e-06
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	1e-06
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	1e-05
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	4e-05
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-05
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	1e-05
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	1e-05
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	2e-05
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	2e-05
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	1e-04
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	7e-04
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	1e-04
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	0.003
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	1e-04
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	4e-04
d1pgva_	167	c.10.1.1 (A:) Tropomodulin C-terminal domain {nema	5e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	9e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.001
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	0.002
d1ouva_	265	a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He	0.003
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.004

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 83.0 bits (203), Expect = 3e-17
 Identities = 35/344 (10%), Positives = 106/344 (30%), Gaps = 32/344 (9%)

Query: 7   QMSEAKRAYRSA---KEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLP 63
              EA+R  + A      G         +V+G++L  +GE   +L   +    ++ ++  
Sbjct: 27  NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV 86

Query: 64  EKHLLPTCQSLGEVYLRLEHFKDAL--------IYQVKKHLELAKDASDLVEQQRACTQL 115
             + L +     E+       + A         +   +   +L      +  + +     
Sbjct: 87  WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW 146

Query: 116 GR-----TYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYI---- 166
            R           +     +   +  +               + A S+ + L+  +    
Sbjct: 147 ARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK 206

Query: 167 -------DAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVY 219
                  +A+    +      +   A  +L    +         ++        N+    
Sbjct: 207 YHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA-----NNHFLQGQWRNIARAQ 261

Query: 220 MELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLA 279
           + L  ++ +   +E+     + +       +  + L +L+++  +  +A      AL LA
Sbjct: 262 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 321

Query: 280 QSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNM 323
                      + +   + +++ I++    + E+   +++ R +
Sbjct: 322 NRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREI 365

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 56.1 bits (133), Expect = 1e-08
 Identities = 39/370 (10%), Positives = 102/370 (27%), Gaps = 42/370 (11%)

Query: 18  AKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQS---L 74
            K+       A +  +   +  N G   EA +  ++    +++ LP         +   L
Sbjct: 2   IKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKL----ALEELPPGWFYSRIVATSVL 57

Query: 75  GEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSD------- 127
           GEV         +L    ++  ++A+          +  Q     +              
Sbjct: 58  GEVLHCKGELTRSLALM-QQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEK 116

Query: 128 ----DDHYSIRNAKKYFKSAMKLAQT-------------LKENPATSRSSFLKEYIDAHN 170
                +   +     +       AQ               +       S   ++ +    
Sbjct: 117 AFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 176

Query: 171 NIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSRE 230
            +    +   +L+ A+  L R   +          D  S  +      +        +  
Sbjct: 177 MLIQCSLARGDLDNARSQLNRLENLL--GNGKYHSDWISNANKVRVIYWQMTGDKAAAAN 234

Query: 231 HIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALA- 289
            +           +       + N+      + +++ A +  ++    A+S+     L  
Sbjct: 235 WLRHTAKPEF--ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 292

Query: 290 -----SQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLD 344
                +Q+         A  V+ +  K       ++  +I  +  +Q+ + L+Q N   +
Sbjct: 293 NLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPE 352

Query: 345 RLIEKSSMIF 354
               ++  I 
Sbjct: 353 LEQHRAQRIL 362

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 39.1 bits (89), Expect = 0.003
 Identities = 16/135 (11%), Positives = 41/135 (30%), Gaps = 1/135 (0%)

Query: 384 LVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAF 443
            +  +        ++A +    + E     G    + +A   +G VL   G+   +L   
Sbjct: 16  ALRAQVAINDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALM 74

Query: 444 QEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEARRLQHEIDKLKESKSEDLEAYDV 503
           Q+  ++A + ++    L +L         +          +     + E   E L  ++ 
Sbjct: 75  QQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEF 134

Query: 504 ARDCCSETDTEGNDH 518
                ++        
Sbjct: 135 LVRIRAQLLWAWARL 149

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.9 bits (185), Expect = 6e-15
 Identities = 52/409 (12%), Positives = 115/409 (28%), Gaps = 32/409 (7%)

Query: 34  IGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVK 93
           +       G++  A +          +  P+         L  ++ +      +  +   
Sbjct: 5   LAHREYQAGDFEAAERHCMQ----LWRQEPDNT--GVLLLLSSIHFQCRRLDRSAHF-ST 57

Query: 94  KHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKEN 153
             ++     ++      A + LG  Y E     +   +     +                
Sbjct: 58  LAIKQNPLLAE------AYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAAL 111

Query: 154 PATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNE--EEVSEDDDGRSRL 211
            A        +   +          + +        +  LE       +  E     +  
Sbjct: 112 VAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171

Query: 212 HHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILC 271
             NLG V+        +  H E+ + +             YINLG +    + +D A+  
Sbjct: 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF------LDAYINLGNVLKEARIFDRAVAA 225

Query: 272 YQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQ 331
           Y +AL+L+ +        + +      +  AI+      + + +      N+  A     
Sbjct: 226 YLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKG 285

Query: 332 ERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKG-----KLSDSFLVI 386
                     +  RL    +     L + +  +     A  L  K      + + +   +
Sbjct: 286 SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL 345

Query: 387 GESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGD 435
               Q+  K  +A+  Y ++  +  +       A A  NMGN L    D
Sbjct: 346 ASVLQQQGKLQEALMHYKEAIRISPTF------ADAYSNMGNTLKEMQD 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.1 bits (144), Expect = 8e-10
 Identities = 44/266 (16%), Positives = 82/266 (30%), Gaps = 51/266 (19%)

Query: 19  KEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVY 78
           K    +   A   + +G +   +GE   A+  F     +   +L          +LG V 
Sbjct: 160 KAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD------AYINLGNVL 213

Query: 79  LRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKK 138
                F  A+           +  S           L   YYE  L        I  A  
Sbjct: 214 KEARIFDRAVAA-------YLRALSLSPNHAVVHGNLACVYYEQGL--------IDLAID 258

Query: 139 YFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNE 198
            ++ A++L                  + DA+ N+     E  ++ EA             
Sbjct: 259 TYRRAIELQP---------------HFPDAYCNLANALKEKGSVAEA---------EDCY 294

Query: 199 EEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGEL 258
                     +   +NL N+  E    +++           K +E     A  + NL  +
Sbjct: 295 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYR------KALEVFPEFAAAHSNLASV 348

Query: 259 HYRVQKYDEAILCYQKALNLAQSMED 284
             +  K  EA++ Y++A+ ++ +  D
Sbjct: 349 LQQQGKLQEALMHYKEAIRISPTFAD 374

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 33/238 (13%), Positives = 64/238 (26%), Gaps = 5/238 (2%)

Query: 251 GYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELK 310
           G + L    Y+   ++ A     +             L S I      + ++        
Sbjct: 1   GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 60

Query: 311 KEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIA 370
           K+   L +   N+        + +  ++      RL       +  L     A      A
Sbjct: 61  KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120

Query: 371 SELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVL 430
            +        +  L    S               K+    K+I      A+A  N+G V 
Sbjct: 121 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKAC-YLKAIETQPNFAVAWSNLGCVF 179

Query: 431 DSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEARRLQHEID 488
           ++ G+   A+  F++    AV  +   +               FD    A      + 
Sbjct: 180 NAQGEIWLAIHHFEK----AVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS 233

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (152), Expect = 2e-10
 Identities = 34/384 (8%), Positives = 93/384 (24%), Gaps = 85/384 (22%)

Query: 8   MS-EAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEAL-KWFRIDYDVSVKYLPEK 65
           MS ++ +  R A+       +++      ++  +R    +   K    D +         
Sbjct: 1   MSLQSAQYLRQAEVLKADMTDSK--LGPAEVWTSRQALQDLYQKMLVTDLE--------- 49

Query: 66  HLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLR 125
                           +   +         L+          +      L          
Sbjct: 50  --------YALDKKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEA---- 97

Query: 126 SDDDHYSIRNAKKYFKSAMK-LAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEE 184
                     A  ++   ++ L      +                + +G++  +  +   
Sbjct: 98  ----------ASGFYTQLLQELCTVFNVDL---------PCRVKSSQLGIISNKQTHTSA 138

Query: 185 AKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEH 244
             K          +               +LG++        ++  +      +      
Sbjct: 139 IVKPQSSSCSYICQ-----------HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSN-- 185

Query: 245 CQGEAKGYINLGELHYRVQKYDEAILCYQKAL-----------NLAQSMEDEDALASQID 293
                + Y  L  L      +   I  Y +++           NL +++        ++ 
Sbjct: 186 ----GQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV- 240

Query: 294 QNIETVKKAIEV------MDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLI 347
           +    V   I+          L K  + L  L   +       Q ++ L Q+  +  +L+
Sbjct: 241 KTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLE-----EQFKELLFQKAFNSQQLV 295

Query: 348 EKSSMIFAWLKHCEYAKRKKRIAS 371
             + +    L H      +    +
Sbjct: 296 HVTVINLFQLHHLRDFSNETEQHT 319

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 0.001
 Identities = 21/298 (7%), Positives = 60/298 (20%), Gaps = 69/298 (23%)

Query: 136 AKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEI 195
           + +Y + A  L                 +  D+      +      L++  + ++   ++
Sbjct: 5   SAQYLRQAEVL------KA---------DMTDSKLGPAEVWTSRQALQDLYQKMLV-TDL 48

Query: 196 CNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINL 255
               +   + D  +    N                         K   +           
Sbjct: 49  EYALDKKVEQDLWNHAFKNQITTLQGQA----------------KNRANPNRSEVQANLS 92

Query: 256 GELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQN 315
             L      Y + +       N+      + +    I          +      K +  +
Sbjct: 93  LFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIV------KPQSSS 146

Query: 316 LKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCD 375
              + ++ ++  G                   + S     +    +              
Sbjct: 147 CSYICQHCLVHLGDI------------ARYRNQTSQAESYYRHAAQL------------- 181

Query: 376 KGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSN 433
                  +  +             I +Y +S  +            A  N+   L   
Sbjct: 182 VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPF------PAASTNLQKALSKA 233

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (141), Expect = 2e-09
 Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 3/82 (3%)

Query: 893 TLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNI 952
           +LD+ C         ++        +  V+ L    LT+A    +S+ L+    L  LN+
Sbjct: 6   SLDIQCEELSDARWAELLPL---LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 953 ENCSITSRTIQKVADALGAEST 974
            +  +    +  V   L   S 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSC 84

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (137), Expect = 6e-09
 Identities = 24/116 (20%), Positives = 41/116 (35%)

Query: 1033 HLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELN 1092
             L +    L   G  +L + L         L L+ C +  +      A++   H + EL+
Sbjct: 344  ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD 403

Query: 1093 LGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEEL 1148
            L  N +   G   L   +  P C L+ LVL           +L     +  +L  +
Sbjct: 404  LSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (136), Expect = 7e-09
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 4/96 (4%)

Query: 1031 LTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILE 1090
            +  L + C  L      +L+  L    Q+   + L  CGL        ++++ +   + E
Sbjct: 4    IQSLDIQCEELSDARWAELLPLL----QQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 1091 LNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQ 1126
            LNL  N +   G + +   L  P C ++ L L  C 
Sbjct: 60   LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (123), Expect = 3e-07
 Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 3/112 (2%)

Query: 897  HCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCS 956
            +                   + L VL L+   ++D+  S L+  L     L  L++ N  
Sbjct: 349  NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 408

Query: 957  ITSRTIQKVADAL-GAESTLAQLCIGYN--SPVTGNAITNLLVKLDTLKSFS 1005
            +    I ++ +++      L QL +     S    + +  L     +L+  S
Sbjct: 409  LGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (121), Expect = 5e-07
 Identities = 25/114 (21%), Positives = 36/114 (31%), Gaps = 13/114 (11%)

Query: 1088 ILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEE 1147
            I  L++    +       L  LL       +V+ L  C L  A    +  AL  N  L E
Sbjct: 4    IQSLDIQCEELSDARWAELLPLLQQ----CQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 1148 LNLADNASKELTLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCN 1201
            LNL  N          L  V    +   L+T  C  +++      L        
Sbjct: 60   LNLRSN---------ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 104

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 4e-06
 Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 7/92 (7%)

Query: 922  LNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIG 981
            L++    L+DA  + L  +L+ C+V+    +++C +T    + ++ AL     LA+L + 
Sbjct: 7    LDIQCEELSDARWAELLPLLQQCQVV---RLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 982  YN--SPVTGNAITNLLVKLDTLKSFSELNLNG 1011
             N    V  + +   L          +L+L  
Sbjct: 64   SNELGDVGVHCVLQGLQTPSC--KIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 4e-06
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 3/91 (3%)

Query: 811 CKELSEAPNMKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLL 870
           C+ELS+A   +LL  L   +V   V + +C L +     + +AL  +  +A L+L  N L
Sbjct: 11  CEELSDARWAELLPLLQQCQV---VRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL 67

Query: 871 GNGTMEKLQQFFISSCQNYVDLTLDLHCNRF 901
           G+  +  + Q   +       L+L   C   
Sbjct: 68  GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 1e-05
 Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 1/78 (1%)

Query: 893 TLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILK-NCKVLYSLN 951
            L L       ++   +    +    L  L+LS N L DA    L   ++    +L  L 
Sbjct: 373 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV 432

Query: 952 IENCSITSRTIQKVADAL 969
           + +   +     ++    
Sbjct: 433 LYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 2e-05
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 9/92 (9%)

Query: 1096 NPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNAS 1155
            N +   G   L   L  P   L+VL L+ C +  +    L   L  N +L EL+L++N  
Sbjct: 350  NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN-- 407

Query: 1156 KELTLQQNLSSVNSENLQPALKTSDCVSKEVD 1187
                    L       L  +++   C+ +++ 
Sbjct: 408  -------CLGDAGILQLVESVRQPGCLLEQLV 432

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 4e-04
 Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 4/95 (4%)

Query: 854 LHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICEC- 912
                 + +L L+   + + +   L    + +  +     LDL  N  G   + Q+ E  
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAA-TLLANHSL--RELDLSNNCLGDAGILQLVESV 421

Query: 913 PVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVL 947
                 L  L L     ++     L  + K+   L
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSL 456

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 0.001
 Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 3/134 (2%)

Query: 986  VTGNAITNLLVK--LDTLKSFSELNLNGLKLSKPVVDRLCQ-LAKTSCLTHLMLGCTNLG 1042
            +    +++      L  L+    + L+   L++     +   L     L  L L    LG
Sbjct: 9    IQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG 68

Query: 1043 SDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEG 1102
              G   +++ L + + +  KL L  C L        ++++  +  + EL+L  N +   G
Sbjct: 69   DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAG 128

Query: 1103 ANALASLLMNPQCC 1116
               L   L++PQC 
Sbjct: 129  LQLLCEGLLDPQCR 142

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 51.7 bits (122), Expect = 5e-08
 Identities = 21/146 (14%), Positives = 51/146 (34%), Gaps = 10/146 (6%)

Query: 162 LKEYIDAHNNIGM--LQMELDNLEEAKKFLIRGLEICNE---EEVSEDDDGRSRLHHNLG 216
           LKE + A+  +     Q+     +EA     R +EI +    EE  +     +  H  L 
Sbjct: 3   LKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLA 62

Query: 217 NVYMELRMWDKSREHIEQDIIICKKIEHCQGEA-----KGYINLGELHYRVQKYDEAILC 271
                LR +D++    ++ +    +      +          +       + +  EA+  
Sbjct: 63  EALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPE 122

Query: 272 YQKALNLAQSMEDEDALASQIDQNIE 297
           ++K + + +  + E     ++ +   
Sbjct: 123 FKKVVEMIEERKGETPGKERMMEVAI 148

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 5e-08
 Identities = 36/302 (11%), Positives = 89/302 (29%), Gaps = 5/302 (1%)

Query: 20  EEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTC-QSLGEVY 78
           EE N   +       G      G+   A+  F        K++     L T      +  
Sbjct: 11  EEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQEL 70

Query: 79  LRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKK 138
           L +   +  L  +          A  +     +  +        +LR    +  +    +
Sbjct: 71  LAISALRRCLELKPDNQTA--LMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAE 128

Query: 139 YFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNE 198
                  L  + +   +    S   E  +       L     + +      +        
Sbjct: 129 EGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEY 188

Query: 199 EEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKK-IEHCQGEAKGYINLGE 257
           ++  +       +  N   ++ +L     +    E+ +   ++ +E   G  +   NLG 
Sbjct: 189 DKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGI 248

Query: 258 LHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNI-ETVKKAIEVMDELKKEEQNL 316
               +  + EA+  + +ALN+ +           + +NI  T++ A+ ++ +        
Sbjct: 249 SCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD 308

Query: 317 KK 318
            +
Sbjct: 309 AR 310

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 7e-06
 Identities = 38/338 (11%), Positives = 92/338 (27%), Gaps = 44/338 (13%)

Query: 118 TYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLK------EYIDAHNN 171
           TY + +   +++    R+  + F+  ++  Q  + +   +   F        ++++A   
Sbjct: 3   TYDKGYQFEEENPL--RDHPQPFEEGLRRLQ--EGDLPNAVLLFEAAVQQDPKHMEAWQY 58

Query: 172 IGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREH 231
           +G  Q E +    A   L R LE+  + + +      S  + +L     E+         
Sbjct: 59  LGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 118

Query: 232 IEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQ 291
               ++   +             +         + E    +  A+ L  +          
Sbjct: 119 AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTS--------- 169

Query: 292 IDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSS 351
                      +      + ++          +         K                +
Sbjct: 170 -IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATL-----------A 217

Query: 352 MIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYK 411
                 +     +R   +      +     S   +G S   L    +A++ + ++  M +
Sbjct: 218 NGNQSEEAVAAYRRALEL------QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 271

Query: 412 SIGNLEGQALAKV-----NMGNVLDSNG--DWAGALDA 442
                 G+  A        +   L   G  D  GA DA
Sbjct: 272 KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 309

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 7e-06
 Identities = 38/289 (13%), Positives = 77/289 (26%), Gaps = 27/289 (9%)

Query: 7   QMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKH 66
            +  A   + +A ++  +  EA     +G       + + A+   R       + L  K 
Sbjct: 34  DLPNAVLLFEAAVQQDPKHMEAW--QYLGTTQAENEQELLAISALR-------RCLELKP 84

Query: 67  LLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVE-QQRACTQLGRTYYEMFLR 125
              T      V    E  +      ++  L      + LV   +      G    +  L 
Sbjct: 85  DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILG 144

Query: 126 SDDDHYSIRNAKKYFKSAMKLAQTLKENPATSR------------SSFLKEYIDAHNNIG 173
           S          K+ F +A++L  T  +                   +             
Sbjct: 145 SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN 204

Query: 174 MLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIE 233
              +                 +       E   G  R  +NLG   + L    ++ EH  
Sbjct: 205 DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFL 264

Query: 234 QDIIICKKIEHCQGE-----AKGYINLGELHYRVQKYDEAILCYQKALN 277
           + + + +K    +GE        +  L      + + D       + L+
Sbjct: 265 EALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 313

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.7 bits (125), Expect = 1e-07
 Identities = 22/240 (9%), Positives = 57/240 (23%), Gaps = 10/240 (4%)

Query: 211 LHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAIL 270
           L      +Y   +  + + +   +     KK  +       Y+   +          A+ 
Sbjct: 39  LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVD 98

Query: 271 CYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTS 330
             + A+ +          A+   +  E ++  +    +     +   +          ++
Sbjct: 99  SLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158

Query: 331 QERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESY 390
           +         A   + IE                +          +  L D FL  G   
Sbjct: 159 KCFIKCADLKALDGQYIEA-------SDIYSKLIKSSMGNRLS--QWSLKDYFLKKGLCQ 209

Query: 391 QKLRKFNKAIKWYTKSWEMYKSIGN-LEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRI 449
                   A +   +      +  +  E   L  +        +   +     F    R+
Sbjct: 210 LAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.9 bits (123), Expect = 2e-07
 Identities = 27/258 (10%), Positives = 64/258 (24%), Gaps = 23/258 (8%)

Query: 24  RQEEARWA-NVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLE 82
           + EEA         I + R E   A   F    D   K   E     T     + +    
Sbjct: 32  KFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG 91

Query: 83  HFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKS 142
           +  +A+                    +    +     +E+    ++D +    A   ++ 
Sbjct: 92  NSVNAVDSLENAIQIF--------THRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL 143

Query: 143 AMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVS 202
           A +     +                       L+       EA     + ++      +S
Sbjct: 144 AGEWYAQDQSVA---------LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS 194

Query: 203 EDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGEL--HY 260
           +       L   L    +       +   +++           + E+    +L +     
Sbjct: 195 QWSLKDYFLKKGL--CQLAATDAVAAARTLQEGQSEDPNFADSR-ESNFLKSLIDAVNEG 251

Query: 261 RVQKYDEAILCYQKALNL 278
             ++  E    +   + L
Sbjct: 252 DSEQLSEHCKEFDNFMRL 269

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.2 bits (116), Expect = 1e-06
 Identities = 15/113 (13%), Positives = 33/113 (29%)

Query: 381 DSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGAL 440
           D  +     Y+  ++ N A   + K+ +  K  GN +      V       S G+   A+
Sbjct: 38  DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97

Query: 441 DAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEARRLQHEIDKLKES 493
           D+ +   +I           +    +         +  +A        +    
Sbjct: 98  DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ 150

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (113), Expect = 3e-06
 Identities = 28/266 (10%), Positives = 80/266 (30%), Gaps = 29/266 (10%)

Query: 249 AKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDE 308
           A   +    ++   ++ + A   + KA +  +   +ED   +          K+      
Sbjct: 37  ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTY-VEAYKCFKSGGNSVN 95

Query: 309 LKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKR 368
                +N  ++  +    +  +  +  L +   +      K+     +    E+  + + 
Sbjct: 96  AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDC--YELAGEWYAQDQS 153

Query: 369 IASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQAL-AKVNMG 427
           +A       K         +      ++ +A   Y+K  +        +       +  G
Sbjct: 154 VALSNKCFIK-------CADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206

Query: 428 NVLDSNGDWAGALDAFQE------GYRIAVEANLPSVQLSALENM----------HYSHM 471
               +  D   A    QE       +  + E+N     + A+              + + 
Sbjct: 207 LCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266

Query: 472 IRFDNIEEARRLQHEIDKLKESKSED 497
           +R D  +    + ++I +  + + +D
Sbjct: 267 MRLDKWKI--TILNKIKESIQQQEDD 290

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 49.4 bits (116), Expect = 1e-06
 Identities = 21/209 (10%), Positives = 55/209 (26%), Gaps = 1/209 (0%)

Query: 199 EEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKK-IEHCQGEAKGYINLGE 257
              +  DD R++L +  G +Y  L +   +R    Q + I     E            G 
Sbjct: 27  ASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN 86

Query: 258 LHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLK 317
                + +D  +           +         +     + +    +           L 
Sbjct: 87  FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY 146

Query: 318 KLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKG 377
              + +   +     +++  + +            +    +     + K           
Sbjct: 147 LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAE 206

Query: 378 KLSDSFLVIGESYQKLRKFNKAIKWYTKS 406
            LS++   +G+ Y  L   + A   +  +
Sbjct: 207 HLSETNFYLGKYYLSLGDLDSATALFKLA 235

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 46.3 bits (108), Expect = 1e-05
 Identities = 20/205 (9%), Positives = 49/205 (23%), Gaps = 9/205 (4%)

Query: 74  LGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSI 133
            G +Y  L     A     +            V             ++    + D    +
Sbjct: 43  RGVLYDSLGLRALARNDFSQALAIRPDMPE--VFNYLGIYLTQAGNFDAAYEAFDSVLEL 100

Query: 134 RNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGL 193
                Y      +A         ++   L  Y D  N+           ++  +   + +
Sbjct: 101 DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEV 160

Query: 194 EICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYI 253
              + E+  ++             V   L    +                  +  ++   
Sbjct: 161 LKQHFEKSDKE-------QWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNF 213

Query: 254 NLGELHYRVQKYDEAILCYQKALNL 278
            LG+ +  +   D A   ++ A+  
Sbjct: 214 YLGKYYLSLGDLDSATALFKLAVAN 238

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 44.4 bits (103), Expect = 4e-05
 Identities = 27/198 (13%), Positives = 49/198 (24%), Gaps = 1/198 (0%)

Query: 249 AKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDE 308
           A+     G L+  +     A   + +AL +   M +                 A E  D 
Sbjct: 37  AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDS 96

Query: 309 LKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKR 368
           + + +        N  IA       K       +  +          WL   E    +K+
Sbjct: 97  VLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQ 156

Query: 369 IASELCDKGK-LSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMG 427
               L    +               L   ++         +   +    E  +     +G
Sbjct: 157 AKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLG 216

Query: 428 NVLDSNGDWAGALDAFQE 445
               S GD   A   F+ 
Sbjct: 217 KYYLSLGDLDSATALFKL 234

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 1e-05
 Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 10/122 (8%)

Query: 168 AHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDK 227
               +G    +  + + A K   +  E+         D        N   VY E   ++K
Sbjct: 6   KEKELGNDAYKKKDFDTALKHYDKAKEL---------DPTNMTYITNQAAVYFEKGDYNK 56

Query: 228 SREHIEQDIIICKK-IEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDED 286
            RE  E+ I + ++  E  +  AK Y  +G  +++ +KY +AI  Y K+L   ++ +   
Sbjct: 57  CRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLK 116

Query: 287 AL 288
             
Sbjct: 117 KC 118

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 44.9 bits (105), Expect = 1e-05
 Identities = 23/166 (13%), Positives = 52/166 (31%), Gaps = 25/166 (15%)

Query: 164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEIC------NEEEVSEDDDGRSRLHHNLGN 217
           E        G +  +     +A     + +         +E+E    +        NL  
Sbjct: 13  EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 72

Query: 218 VYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALN 277
            Y++LR + K+ E  ++ + +    E            GE    + +++ A   ++K L 
Sbjct: 73  CYLKLREYTKAVECCDKALGLDSANEKG------LYRRGEAQLLMNEFESAKGDFEKVLE 126

Query: 278 LAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNM 323
           +               QN     +      + K+  +  ++   NM
Sbjct: 127 VNP-------------QNKAARLQIFMCQKKAKEHNERDRRTYANM 159

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.3 bits (106), Expect = 1e-05
 Identities = 33/214 (15%), Positives = 70/214 (32%), Gaps = 19/214 (8%)

Query: 167 DAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWD 226
                 G          EA     R +           +   +  + N    Y++++  +
Sbjct: 5   QELKEQGNRLFVGRKYPEAAACYGRAITR---------NPLVAVYYTNRALCYLKMQQPE 55

Query: 227 KSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDED 286
           ++     + + +  +          +  LG+    ++ YDEAI   Q+A +LA+  E   
Sbjct: 56  QALADCRRALELDGQSVKA------HFFLGQCQLEMESYDEAIANLQRAYSLAK--EQRL 107

Query: 287 ALASQIDQNIETVKKAIEVMDELKK--EEQNLKKLTRNMIIAKGTSQERKYLLQQNASLD 344
                I   +   KK      E ++  +E  L      +I A+   +  +         D
Sbjct: 108 NFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHED 167

Query: 345 RLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGK 378
               ++       KH +Y      + S++ +K K
Sbjct: 168 DGHIRAQQACIEAKHDKYMADMDELFSQVDEKRK 201

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.1 bits (108), Expect = 2e-05
 Identities = 26/309 (8%), Positives = 76/309 (24%), Gaps = 38/309 (12%)

Query: 2   GRDEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWF----RIDYDV 57
           GR +++ SE +   +  + E   +        +    +        L+        + D 
Sbjct: 3   GRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDF 62

Query: 58  SVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGR 117
           +  +   + +L   ++           K  L +         K       +    ++L  
Sbjct: 63  ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122

Query: 118 T-------YYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHN 170
                       FL +D+ ++   + +++  +   +A   +     S  +       + +
Sbjct: 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH 182

Query: 171 NIGMLQMELDNLEEAKKFLIRGLEICNEE---------------------EVSEDDDGRS 209
               L  +L    ++         +  +E                               
Sbjct: 183 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPL 242

Query: 210 RLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAI 269
                       L+   +S + +++     K            I L      +    E +
Sbjct: 243 FRCELSVEKSTVLQSELESCKELQELEPENKWC------LLTIILLMRALDPLLYEKETL 296

Query: 270 LCYQKALNL 278
             +     +
Sbjct: 297 QYFSTLKAV 305

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.1 bits (108), Expect = 2e-05
 Identities = 25/278 (8%), Positives = 72/278 (25%), Gaps = 15/278 (5%)

Query: 131 YSIRNAKKYFKSAMKLAQT-LKENPA-TSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKF 188
           +  R A +  +S ++L    L  NP   +  +  +E +         +     ++    F
Sbjct: 36  FQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGF 95

Query: 189 LIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGE 248
           L   L +  +   +              N   EL +  +    +E D       ++ +  
Sbjct: 96  LESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARF---LEADERNFHCWDYRRFV 152

Query: 249 AKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDE 308
                             E +      +    S        S +   +     +      
Sbjct: 153 ---------AAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 203

Query: 309 LKKEEQNLKKLTRNMIIAKGTSQERKYLLQQN-ASLDRLIEKSSMIFAWLKHCEYAKRKK 367
            +       +L +N        Q   +  +      + L      +          +  K
Sbjct: 204 PENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCK 263

Query: 368 RIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTK 405
            +     +      + +++  +   L    + +++++ 
Sbjct: 264 ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFST 301

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 19/117 (16%)

Query: 162 LKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYME 221
           L E I   N  G+L  +  + + A                S   D  SR+  N+G +Y  
Sbjct: 2   LVEAISLWNE-GVLAADKKDWKGALDAF------------SAVQDPHSRICFNIGCMYTI 48

Query: 222 LRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNL 278
           L+   ++ +   + I   K +     +          +Y+ +KYD AI   ++AL  
Sbjct: 49  LKNMTEAEKAFTRSINRDKHLAVAYFQRGML------YYQTEKYDLAIKDLKEALIQ 99

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 7e-04
 Identities = 14/103 (13%), Positives = 36/103 (34%), Gaps = 10/103 (9%)

Query: 214 NLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQ 273
           N G +  + + W  + +                  ++   N+G ++  ++   EA   + 
Sbjct: 10  NEGVLAADKKDWKGALDAFSAVQ---------DPHSRICFNIGCMYTILKNMTEAEKAFT 60

Query: 274 KALNLAQSMEDEDALASQIDQNIETVKKAIEVMDE-LKKEEQN 315
           +++N  + +         +    E    AI+ + E L +   N
Sbjct: 61  RSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN 103

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 13/134 (9%), Positives = 36/134 (26%), Gaps = 23/134 (17%)

Query: 146 LAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDD 205
           L + +K +P         +     ++   L     + E A + L++ +++          
Sbjct: 19  LIEAIKASP---------KDASLRSSFIELLCIDGDFERADEQLMQSIKL---------F 60

Query: 206 DGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKY 265
                    L ++    +      +      ++         E    +    L    Q Y
Sbjct: 61  PEYLPGASQLRHLVKAAQARKDFAQGAATAKVL-----GENEELTKSLVSFNLSMVSQDY 115

Query: 266 DEAILCYQKALNLA 279
           ++      +   L 
Sbjct: 116 EQVSELALQIEELR 129

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 38.9 bits (90), Expect = 0.003
 Identities = 15/134 (11%), Positives = 43/134 (32%), Gaps = 16/134 (11%)

Query: 177 MELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDI 236
           +    L++A + LI  ++              + L  +   +      ++++ E + Q  
Sbjct: 7   LSEGQLQQALELLIEAIKA---------SPKDASLRSSFIELLCIDGDFERADEQLMQ-- 55

Query: 237 IICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQS-MEDEDALASQIDQN 295
                I+       G   L  L    Q   +       A  L ++    +  ++  +   
Sbjct: 56  ----SIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMV 111

Query: 296 IETVKKAIEVMDEL 309
            +  ++  E+  ++
Sbjct: 112 SQDYEQVSELALQI 125

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 22/150 (14%), Positives = 50/150 (33%), Gaps = 8/150 (5%)

Query: 164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELR 223
              +   NIG    +  N E A K   + L        + +D   ++L     +  + + 
Sbjct: 25  LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIG 84

Query: 224 MWDKSREHIEQDIIICKKIEHCQGEAKGYI-NLGELHYRVQKYDEAILCYQKALNLAQSM 282
                    +  +  C +           +    +    +++YD+A+   +KA  +A   
Sbjct: 85  ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED 144

Query: 283 EDEDALASQIDQNIETVKKAIEVMDELKKE 312
           +        I   +  VK+ I+   + +K 
Sbjct: 145 KA-------IQAELLKVKQKIKAQKDKEKA 167

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (91), Expect = 4e-04
 Identities = 15/120 (12%), Positives = 36/120 (30%), Gaps = 10/120 (8%)

Query: 178 ELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDII 237
            +++L + +K                                +  R  D  R+ I   + 
Sbjct: 11  SVEDLLKFEKKFQSEKAA---------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVL-LE 60

Query: 238 ICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIE 297
                   + +      L   +YR+++Y++A+   +  L           L   ID+ ++
Sbjct: 61  ELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 167

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.3 bits (93), Expect = 5e-04
 Identities = 18/160 (11%), Positives = 48/160 (30%), Gaps = 6/160 (3%)

Query: 1019 VDRLCQLAKTSC--LTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIH 1076
            V+      +     L  + +      S   ++ +      ++   K  L+   +  +   
Sbjct: 3    VESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEAR 62

Query: 1077 KFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKC---QLGLAGVL 1133
                 +     +  LN+  N +  E    L          +            LG    +
Sbjct: 63   GLIELIETSPSLRVLNVESNFLTPELLARLLRS-TLVTQSIVEFKADNQRQSVLGNQVEM 121

Query: 1134 QLIKALSENDTLEELNLADNASKELTLQQNLSSVNSENLQ 1173
             ++ A+ EN++L  + ++  + +           N E ++
Sbjct: 122  DMMMAIEENESLLRVGISFASMEARHRVSEALERNYERVR 161

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.6 bits (93), Expect = 9e-04
 Identities = 52/330 (15%), Positives = 97/330 (29%), Gaps = 17/330 (5%)

Query: 840  CELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTL-DLHC 898
              +       +   L    +V  + LS N +G      L +  I+S ++       D+  
Sbjct: 13   DAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSEN-IASKKDLEIAEFSDIFT 71

Query: 899  NRF---GPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENC 955
             R     P  L  + +  +   +L  + LS N         L   L     L  L + N 
Sbjct: 72   GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN 131

Query: 956  SITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLS 1015
             +  +   K+A AL   +   +                L        + +  +   L   
Sbjct: 132  GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 191

Query: 1016 KPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSL---------QLVESLFSRAQESVKLDLS 1066
            K V + +        L   +  C  L                 +           +L L+
Sbjct: 192  KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 251

Query: 1067 YCGLESTCIHKFTASVSLV--HGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSK 1124
             C L +        + S +   G+  L L  N I  +    L +++      L  L L+ 
Sbjct: 252  DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 311

Query: 1125 CQLGLAG-VLQLIKALSENDTLEELNLADN 1153
             +      V+  I+ +       EL+  D+
Sbjct: 312  NRFSEEDDVVDEIREVFSTRGRGELDELDD 341

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.9 bits (91), Expect = 0.002
 Identities = 46/301 (15%), Positives = 85/301 (28%), Gaps = 17/301 (5%)

Query: 870  LGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRL 929
            L   T E  +  F    ++     + L  N  G      + E       L +   S    
Sbjct: 12   LDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT 71

Query: 930  ------TDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYN 983
                         L   L  C  L+++ + + +      + + D L   + L  L +  N
Sbjct: 72   GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN 131

Query: 984  SPVTGNAI--------TNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKT-SCLTHL 1034
                              +  K         +     +L    +    +  ++   L  +
Sbjct: 132  GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 191

Query: 1035 MLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLG 1094
             +    +  +G   L+    +  QE   LDL               ++     + EL L 
Sbjct: 192  KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 251

Query: 1095 GNPIMKEGANALASLLMNPQCC-LKVLVLSKCQLGLAGVLQLIKALSENDT-LEELNLAD 1152
               +   GA A+       +   L+ L L   ++ L  V  L   + E    L  L L  
Sbjct: 252  DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 311

Query: 1153 N 1153
            N
Sbjct: 312  N 312

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 41/275 (14%), Positives = 80/275 (29%), Gaps = 37/275 (13%)

Query: 915  LFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAEST 974
            L     +L+L  N++T           KN K L++L + N  I+         A      
Sbjct: 29   LPPDTALLDLQNNKIT----EIKDGDFKNLKNLHTLILINNKISK----ISPGAFAPLVK 80

Query: 975  LAQLCIGYNS-----PVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTS 1029
            L +L +  N            +  L V  + +    +   NGL     V      L  + 
Sbjct: 81   LERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 140

Query: 1030 CLTHLMLGCTNL-----GSDGSLQLVESLFSRAQESVKLDLSYCGLES---------TCI 1075
                   G   L            + + L     E   L L    +             +
Sbjct: 141  IENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTE---LHLDGNKITKVDAASLKGLNNL 197

Query: 1076 HKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCC-----LKVLVLSKCQLG-- 1128
             K   S + +  +   +L   P ++E       L+  P        ++V+ L    +   
Sbjct: 198  AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI 257

Query: 1129 LAGVLQLIKALSENDTLEELNLADNASKELTLQQN 1163
             +         ++  +   ++L  N  +   +Q +
Sbjct: 258  GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 292

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 0.002
 Identities = 32/309 (10%), Positives = 83/309 (26%), Gaps = 33/309 (10%)

Query: 123 FLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNL 182
           F+  D   Y +   +  +     + Q    NP   +  +  ++ D ++    +    +  
Sbjct: 1   FVSLDSPSYVLYRDRAEWADIDPVPQNDGPNPV-VQIIYSDKFRDVYDYFRAVLQRDERS 59

Query: 183 EEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMEL-RMWDKSREHIEQDIIICKK 241
           E A K     +E+               + H    +   L +   +   +I   I    K
Sbjct: 60  ERAFKLTRDAIELNAAN---------YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK 110

Query: 242 IEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDA-LASQIDQNIETVK 300
                     + +   L   ++   + +      LN               I +      
Sbjct: 111 NYQV------WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDN 164

Query: 301 KAIEVMDELKKEEQN----------LKKLTRNMIIAKGTSQERKY--LLQQNASLDRLIE 348
           +   V   LK++ +N          +   T     A    + +    +++     +    
Sbjct: 165 ELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWN 224

Query: 349 KSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKL--RKFNKAIKWYTKS 406
               I       +Y     +   +L            + + Y+ +   + +       K+
Sbjct: 225 YLKGILQDRGLSKYPNLLNQ-LLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKA 283

Query: 407 WEMYKSIGN 415
            E+ + +  
Sbjct: 284 LELCEILAK 292

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

 Score = 38.3 bits (87), Expect = 0.003
 Identities = 28/249 (11%), Positives = 59/249 (23%), Gaps = 13/249 (5%)

Query: 34  IGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVK 93
           +G       ++ +A K+F            +      C +LG +Y + +  +  L     
Sbjct: 8   LGAKSYKEKDFTQAKKYFEK--------ACDLKENSGCFNLGVLYYQGQGVEKNLKKAAS 59

Query: 94  KHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKEN 153
            + +                                +YS     KY +    L     + 
Sbjct: 60  FYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDG 119

Query: 154 PATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHH 213
              +R                       L        RG     ++ ++  D        
Sbjct: 120 KVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAG-RGTPKDLKKALASYDKACDLKDS 178

Query: 214 NLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYR----VQKYDEAI 269
                   +    +      ++ +             G  NLG + Y      +   +AI
Sbjct: 179 PGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAI 238

Query: 270 LCYQKALNL 278
             ++K   L
Sbjct: 239 ENFKKGCKL 247

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.4 bits (88), Expect = 0.004
 Identities = 24/170 (14%), Positives = 53/170 (31%), Gaps = 14/170 (8%)

Query: 791 IEVSIDGWVQKRLMKLYIECCKELSEAPNMKLLKKLYISEVEDEVIVSECELQDI-SVTP 849
           I       +   L +L +   + L +   +  L  L   ++ +  I +   L  +  +T 
Sbjct: 209 ISDITPLGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTE 267

Query: 850 LLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQI 909
           L    +    ++ L     L      E   +             L L+ N    + +  +
Sbjct: 268 LKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI--SDISPV 325

Query: 910 CECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITS 959
                   +L  L  + N+++D         L N   +  L+  +  I+ 
Sbjct: 326 SSLT----KLQRLFFANNKVSDVSS------LANLTNINWLSAGHNQISD 365

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1313
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	100.0
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	100.0
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.97
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.96
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.96
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.96
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.95
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.92
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.92
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.9
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.82
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.8
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.79
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.78
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.77
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.77
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.76
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.76
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.75
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.73
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.72
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.66
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.58
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.55
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.55
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.55
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.55
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.46
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.42
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.37
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	99.37
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	99.35
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.35
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.3
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.3
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.29
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.29
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.29
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.29
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.27
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	99.27
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.27
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	99.24
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.22
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.21
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.2
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.19
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.19
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.18
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.18
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.18
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.17
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.12
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.11
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.09
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.08
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.08
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.08
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.08
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.07
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.06
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.04
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.03
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.01
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.99
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.97
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.96
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.83
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.77
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.72
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.68
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.65
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.65
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.62
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.6
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.54
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.51
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.45
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.4
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.38
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.37
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.35
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.34
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.29
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.13
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.04
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.98
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.86
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.75
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.55
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.47
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	96.34
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	96.3
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	80.18

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-33  Score=258.45  Aligned_cols=411  Identities=24%  Similarity=0.303  Sum_probs=322.2

Q ss_pred             HHHCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf             88508880699999985036777698248998947889899975149995889802799997899999999971146764
Q 000742          811 CKELSEAPNMKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYV  890 (1313)
Q Consensus       811 c~~l~~~~~~~~l~~l~~~~~~~~L~ls~~~l~~~~~~~l~~~L~~~~~L~~L~Ls~n~l~~~~~~~L~~~~~~~~~~~~  890 (1313)
                      |..++...+.+++..+.+++.   |+|++|++++.++..++.+|..+++|+.|||++|.|++.++..+...+..  ....
T Consensus        11 ~~~i~~~~~~~l~~~l~~l~~---L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~--~~~~   85 (460)
T d1z7xw1          11 CEELSDARWAELLPLLQQCQV---VRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT--PSCK   85 (460)
T ss_dssp             SCCCCHHHHHHHHHHHTTCSE---EEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS--TTCC
T ss_pred             CCCCCHHHHHHHHHHCCCCCE---EEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHC--CCCC
T ss_conf             895886899999976779999---98289999889999999998539998889795985972899999999843--7887


Q ss_pred             CEEEECCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC-CCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf             4199802799997889999710327998588980399999369999999873199-976899425999988899999998
Q 000742          891 DLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCK-VLYSLNIENCSITSRTIQKVADAL  969 (1313)
Q Consensus       891 l~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~~~l~~~~~~~l~~~l  969 (1313)
                      ++.|+|++|++++.+...++..+..+++|++|+|++|.+++.++..+...+.... ....+......+...+...+...+
T Consensus        86 L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  165 (460)
T d1z7xw1          86 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL  165 (460)
T ss_dssp             CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred             CCEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCC
T ss_conf             78877888775432210121100003432002444332023455554430135543332222223222001100112223


Q ss_pred             HCCCCCCEEEECCCCCCCHHHHHHHHHHHCC-CCCCCEEECCCCCCCHHHHHHHHH-HHHCCCCCEEECCCCCCCCCHHH
Q ss_conf             1499966888078889890259999986104-886664654798899579999999-85159865887457779971199
Q 000742          970 GAESTLAQLCIGYNSPVTGNAITNLLVKLDT-LKSFSELNLNGLKLSKPVVDRLCQ-LAKTSCLTHLMLGCTNLGSDGSL 1047 (1313)
Q Consensus       970 ~~~~~L~~L~Ls~n~~~~~~~~~~l~~~l~~-~~~L~~L~L~~~~l~~~~~~~l~~-~~~~~~L~~L~Ls~n~i~~~~~~ 1047 (1313)
                      ..+..++.++++.+. ....+...+...+.. ...+..+.+..+.+.......+.. +...+.++.+.++.|.+.+.++.
T Consensus       166 ~~~~~~~~~~ls~~~-~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~  244 (460)
T d1z7xw1         166 RAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA  244 (460)
T ss_dssp             HHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             CCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCC
T ss_conf             333222223322221-2455554323433211221001241124542101101223322222210010021122334420


Q ss_pred             HHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCC
Q ss_conf             99999841899410998257989936899999997307983389766999993889999998419999624998103779
Q 000742         1048 QLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQL 1127 (1313)
Q Consensus      1048 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i 1127 (1313)
                      ............++.+++++|.++......+...+..++.+..+++++|.+++.+...++..+....+.|+.+++++|.+
T Consensus       245 ~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l  324 (460)
T d1z7xw1         245 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF  324 (460)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCH
T ss_conf             11000111111100001345433212334332211123433344444333224564211101233344433332333410


Q ss_pred             CHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             98889999998622998469973489998033542100123357765433454445453311110111247778421014
Q 000742         1128 GLAGVLQLIKALSENDTLEELNLADNASKELTLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVAD 1207 (1313)
Q Consensus      1128 ~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 1207 (1313)
                      +..++..++..+..+++|++|+|++|.|++.|+..+...+                             ....+.|+.|+
T Consensus       325 ~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l-----------------------------~~~~~~L~~L~  375 (460)
T d1z7xw1         325 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL-----------------------------GQPGSVLRVLW  375 (460)
T ss_dssp             BGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHH-----------------------------TSTTCCCCEEE
T ss_pred             HHHHHHHCCCCCCCCCCHHHHHEEEECCCCCCCCHHHHHH-----------------------------HCCCCCCCEEE
T ss_conf             2334432133221101111320121013576640011122-----------------------------04567778898


Q ss_pred             CCCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHHHHHHCC
Q ss_conf             678510121001368987654355588630004899999976145676301888888889999999997228
Q 000742         1208 SEDDKIRVESAASGFDNSCTSSCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFSTQAVKTLYCAWSSR 1279 (1313)
Q Consensus      1208 L~~n~i~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~l~~~l~~~~~L~~L~Ls~N~~~~~~~~~l~~~l~~~ 1279 (1313)
                      |++|.|+...                       ...++..+..+++|++|+|++|.|+++|+..|..++..+
T Consensus       376 Ls~n~i~~~~-----------------------~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~  424 (460)
T d1z7xw1         376 LADCDVSDSS-----------------------CSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP  424 (460)
T ss_dssp             CTTSCCCHHH-----------------------HHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTST
T ss_pred             CCCCCCCHHH-----------------------HHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf             9799797599-----------------------999999996299889898999969879999999999747

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-30  Score=234.89  Aligned_cols=329  Identities=22%  Similarity=0.329  Sum_probs=194.5

Q ss_pred             CCEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHH
Q ss_conf             77698248998947889899975149995889802799997899999999971146764419980279999788999971
Q 000742          832 EDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICE  911 (1313)
Q Consensus       832 ~~~L~ls~~~l~~~~~~~l~~~L~~~~~L~~L~Ls~n~l~~~~~~~L~~~~~~~~~~~~l~~L~Ls~n~l~~~~~~~l~~  911 (1313)
                      ++.|++++|.+++.++..+..++..+++|++|+|++|.|++.++..+...+...  ......+......+.......+..
T Consensus        86 L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~  163 (460)
T d1z7xw1          86 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDP--QCRLEKLQLEYCSLSAASCEPLAS  163 (460)
T ss_dssp             CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTST--TCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             CCEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCHHHHCCCCC
T ss_conf             788778887754322101211000034320024443320234555544301355--433322222232220011001122


Q ss_pred             CCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC-CCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHH
Q ss_conf             0327998588980399999369999999873199-976899425999988899999998149996688807888989025
Q 000742          912 CPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCK-VLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNA  990 (1313)
Q Consensus       912 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~~~~~~~  990 (1313)
                      .+..+..++.++++.+.+.+.++..+...+...+ ....+.+..+.+...++..+...+..++.++.++++.|. +....
T Consensus       164 ~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~-~~~~~  242 (460)
T d1z7xw1         164 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVG  242 (460)
T ss_dssp             HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHCC-CCCCC
T ss_conf             23333222223322221245555432343321122100124112454210110122332222221001002112-23344


Q ss_pred             HHHHH-HHHCCCCCCCEEECCCCCCCHHHHHHHHH-HHHCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEECCCC
Q ss_conf             99999-86104886664654798899579999999-85159865887457779971199999998418994109982579
Q 000742          991 ITNLL-VKLDTLKSFSELNLNGLKLSKPVVDRLCQ-LAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYC 1068 (1313)
Q Consensus       991 ~~~l~-~~l~~~~~L~~L~L~~~~l~~~~~~~l~~-~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n 1068 (1313)
                      +.... ........++.+++++|.+.......+.. +...+.+..+++++|.+++.++..++..+....+.|+.++++.|
T Consensus       243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~  322 (460)
T d1z7xw1         243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  322 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             CCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCC
T ss_conf             20110001111111000013454332123343322111234333444443332245642111012333444333323334


Q ss_pred             CCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCEE
Q ss_conf             89936899999997307983389766999993889999998419999624998103779988899999986229984699
Q 000742         1069 GLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEEL 1148 (1313)
Q Consensus      1069 ~l~~~~~~~l~~~l~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L 1148 (1313)
                      .+++.++..++..+..+++|++|+|++|.+++.|+..++..+..+...|+.|+|++|.|++.|+..++..+..+++|++|
T Consensus       323 ~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L  402 (460)
T d1z7xw1         323 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL  402 (460)
T ss_dssp             CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEE
T ss_pred             CHHHHHHHHCCCCCCCCCCHHHHHEEEECCCCCCCCHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCEE
T ss_conf             10233443213322110111132012101357664001112204567778898979979759999999999629988989


Q ss_pred             ECCCCCCCHHHHHHH
Q ss_conf             734899980335421
Q 000742         1149 NLADNASKELTLQQN 1163 (1313)
Q Consensus      1149 ~Ls~N~i~~~~~~~~ 1163 (1313)
                      +|++|.|++.|+..+
T Consensus       403 ~Ls~N~i~~~g~~~l  417 (460)
T d1z7xw1         403 DLSNNCLGDAGILQL  417 (460)
T ss_dssp             ECCSSSCCHHHHHHH
T ss_pred             ECCCCCCCHHHHHHH
T ss_conf             899996987999999

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.6e-29  Score=226.11  Aligned_cols=351  Identities=18%  Similarity=0.155  Sum_probs=240.2

Q ss_pred             CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             24669999999999998069199999999999999870799999999999999998627988722688789999997029
Q 000742            4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH   83 (1313)
Q Consensus         4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~   83 (1313)
                      ..|++++|++.|+++++..|....+  +..+|.+|...|++++|+.+|+++++..|.      .+.++..+|.+|..+|+
T Consensus        11 ~~G~~~~A~~~~~~~l~~~p~~~~~--~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~a~~~l~~~~~~~g~   82 (388)
T d1w3ba_          11 QAGDFEAAERHCMQLWRQEPDNTGV--LLLLSSIHFQCRRLDRSAHFSTLAIKQNPL------LAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTC
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHHCC
T ss_conf             8699999999999999868998999--999999999869999999999999985999------89999999999642000


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC--------------------------CCCHHHHHHHH
Q ss_conf             4999999999999998970598999999999999999972059--------------------------74045399999
Q 000742           84 FKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRS--------------------------DDDHYSIRNAK  137 (1313)
Q Consensus        84 ~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~--------------------------~~~~~~~~~A~  137 (1313)
                      +++|+..+ .++.+..+.....      ....+..+.......                          .........+.
T Consensus        83 ~~~A~~~~-~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (388)
T d1w3ba_          83 LQEAIEHY-RHALRLKPDFIDG------YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAK  155 (388)
T ss_dssp             HHHHHHHH-HHHHHHCTTCHHH------HHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHH
T ss_pred             CCCCCCCC-CCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             22222222-2121122222222------2222222222222222222211122222222222222222221100013567


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf             99999999999831599887311049999999999999997099999999999978575220148881589999999999
Q 000742          138 KYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGN  217 (1313)
Q Consensus       138 ~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~Lg~  217 (1313)
                      ..+.+.+..               .|..+.++..+|..+...+++++|...++++++..+         ....++..+|.
T Consensus       156 ~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p---------~~~~~~~~l~~  211 (388)
T d1w3ba_         156 ACYLKAIET---------------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP---------NFLDAYINLGN  211 (388)
T ss_dssp             HHHHHHHHH---------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT---------TCHHHHHHHHH
T ss_pred             HHHHHHHCC---------------CCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC---------CCHHHHHHHHH
T ss_conf             888874025---------------861068998636301024719999999999998494---------64999999715


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             99982789999999999999999810114279999999999998109899999999999999970692588999999499
Q 000742          218 VYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIE  297 (1313)
Q Consensus       218 ~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~~lg  297 (1313)
                      ++...|++++|+..++++....+      .....+..+|.++...|++++|+.+|++++++.|....       +     
T Consensus       212 ~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~-----  273 (388)
T d1w3ba_         212 VLKEARIFDRAVAAYLRALSLSP------NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD-------A-----  273 (388)
T ss_dssp             HHHTTTCTTHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH-------H-----
T ss_pred             HHHCCCCHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH-------H-----
T ss_conf             52200529999999998577755------47999999999999878999999999999984999899-------9-----


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf             99999988999999999999999999983089069999999999999999999979989999999999999999807912
Q 000742          298 TVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKG  377 (1313)
Q Consensus       298 ~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~l~~~~~~~~  377 (1313)
                                                                   +..++..+...+++.+|.+.++.+...      .|
T Consensus       274 ---------------------------------------------~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~  302 (388)
T d1w3ba_         274 ---------------------------------------------YCNLANALKEKGSVAEAEDCYNTALRL------CP  302 (388)
T ss_dssp             ---------------------------------------------HHHHHHHHHHHSCHHHHHHHHHHHHHH------CT
T ss_pred             ---------------------------------------------HHHHHHHHHHCCCHHHHHHHHHHHHCC------CC
T ss_conf             ---------------------------------------------999999999748799999999865404------87


Q ss_pred             HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf             45999999999999941999999999999999999179045899999999999974999999999999999999919926
Q 000742          378 KLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPS  457 (1313)
Q Consensus       378 ~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~l~~~~~~~~  457 (1313)
                      .....+..+|.+|...|++++|+.+|++++++.|      ..+.++.++|.+|...|++++|+.+|++|+++.++     
T Consensus       303 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~-----  371 (388)
T d1w3ba_         303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFP------EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-----  371 (388)
T ss_dssp             TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT------TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT-----
T ss_pred             CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-----
T ss_conf             3001015799999987899999999999998688------98999999999999859999999999999970999-----


Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             79999875489999720
Q 000742          458 VQLSALENMHYSHMIRF  474 (1313)
Q Consensus       458 ~~~~al~~L~~~~~~~~  474 (1313)
                       ...++.++|.++...+
T Consensus       372 -~~~a~~~lg~~~~~~~  387 (388)
T d1w3ba_         372 -FADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             -CHHHHHHHHHHHHHTC
T ss_pred             -CHHHHHHHHHHHHHCC
T ss_conf             -8999999999999858

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.96  E-value=1.2e-26  Score=208.04  Aligned_cols=297  Identities=17%  Similarity=0.138  Sum_probs=199.8

Q ss_pred             CCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCC------HHHHHHHHHCC
Q ss_conf             998947889899975149995889802799997899999999971146764419980279999------78899997103
Q 000742          840 CELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFG------PTTLFQICECP  913 (1313)
Q Consensus       840 ~~l~~~~~~~l~~~L~~~~~L~~L~Ls~n~l~~~~~~~L~~~~~~~~~~~~l~~L~Ls~n~l~------~~~~~~l~~~l  913 (1313)
                      +.++..++.++..+|..+.+|+.|+|++|.|++.++..|...+.   ....+..|+++.+.++      ..+...++..+
T Consensus        13 ~~~~~e~~~~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~---~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l   89 (344)
T d2ca6a1          13 DAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIA---SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL   89 (344)
T ss_dssp             SSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTT---TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHH---HCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             88998789999999963899788978498377899999999998---589988888877754334542106787999887


Q ss_pred             CCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHH
Q ss_conf             27998588980399999369999999873199976899425999988899999998149996688807888989025999
Q 000742          914 VLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITN  993 (1313)
Q Consensus       914 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~~~~~~~~~~  993 (1313)
                      ..+++|+.|+|++|.+++.++..+...+..+++|+.|++++|.++..+...++.++...                    .
T Consensus        90 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~--------------------~  149 (344)
T d2ca6a1          90 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL--------------------A  149 (344)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHH--------------------H
T ss_pred             HHCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHEECCCCCCCCCCCCCCCCCCCCC--------------------C
T ss_conf             54777563300001345543331011100234321000002466665431111212222--------------------1


Q ss_pred             HHHHHCCCCCCCEEECCCCCCCHHHHHHHHH-HHHCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCH
Q ss_conf             9986104886664654798899579999999-851598658874577799711999999984189941099825798993
Q 000742          994 LLVKLDTLKSFSELNLNGLKLSKPVVDRLCQ-LAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLES 1072 (1313)
Q Consensus       994 l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~-~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 1072 (1313)
                      ........+.|+.+.++++.+++.+...++. +..+++|+.|+|+.|.+++.|+..+.......++.|+.|+++.|.+++
T Consensus       150 ~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~  229 (344)
T d2ca6a1         150 VNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH  229 (344)
T ss_dssp             HHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH
T ss_pred             CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCHHHHCCCCCCCCCCCC
T ss_conf             10001467642111013650135543322111123332133543332222222320024332110121122233332222


Q ss_pred             HHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHCC-CCCCEEEEEEECCCCCHHHHHHHHHHHH-CCCCCCEEEC
Q ss_conf             6899999997307983389766999993889999998419-9996249981037799888999999862-2998469973
Q 000742         1073 TCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMN-PQCCLKVLVLSKCQLGLAGVLQLIKALS-ENDTLEELNL 1150 (1313)
Q Consensus      1073 ~~~~~l~~~l~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~-~~~~L~~L~Ls~n~i~~~g~~~l~~~l~-~~~~L~~L~L 1150 (1313)
                      .++..++..+..+++|++|+|++|.|++.|+..++..+.. ++.+|++|++++|.|++.|+..+..++. .++.|+.|+|
T Consensus       230 ~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l  309 (344)
T d2ca6a1         230 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL  309 (344)
T ss_dssp             HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEC
T ss_conf             22223444332322111103004756715667888776315688889898989869808999999999703899998978


Q ss_pred             CCCCCCHHH
Q ss_conf             489998033
Q 000742         1151 ADNASKELT 1159 (1313)
Q Consensus      1151 s~N~i~~~~ 1159 (1313)
                      ++|.+.+.+
T Consensus       310 ~~N~~~~~~  318 (344)
T d2ca6a1         310 NGNRFSEED  318 (344)
T ss_dssp             TTSBSCTTS
T ss_pred             CCCCCCCCC
T ss_conf             798089862

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.7e-25  Score=199.71  Aligned_cols=364  Identities=14%  Similarity=0.129  Sum_probs=236.0

Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             99999998707999999999999999986279887226887899999970294999999999999998970598999999
Q 000742           32 NVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRA  111 (1313)
Q Consensus        32 ~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a  111 (1313)
                      ..+|..++..|+|++|++.|+++++..|.      ...++..+|.+|..+|++++|+.++ ++++++.|...      .+
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~-~~al~~~p~~~------~a   69 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWRQEPD------NTGVLLLLSSIHFQCRRLDRSAHFS-TLAIKQNPLLA------EA   69 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHCTTCH------HH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHCCCCH------HH
T ss_conf             99999999869999999999999986899------8999999999999869999999999-99998599989------99


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             99999999997205974045399999999999999998315998873110499999999999999970999999999999
Q 000742          112 CTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIR  191 (1313)
Q Consensus       112 ~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~  191 (1313)
                      +..+|.+|..+        |++++|+..+..+.....               .........+..+.....+..+......
T Consensus        70 ~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (388)
T d1w3ba_          70 YSNLGNVYKER--------GQLQEAIEHYRHALRLKP---------------DFIDGYINLAAALVAAGDMEGAVQAYVS  126 (388)
T ss_dssp             HHHHHHHHHHH--------TCHHHHHHHHHHHHHHCT---------------TCHHHHHHHHHHHHHHSCSSHHHHHHHH
T ss_pred             HHHHHHHHHHH--------CCCCCCCCCCCCCCCCCC---------------CCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99999996420--------002222222221211222---------------2222222222222222222222222111


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             78575220148881589999999999999827899999999999999998101142799999999999981098999999
Q 000742          192 GLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILC  271 (1313)
Q Consensus       192 al~~~~~~~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  271 (1313)
                      .......         ........+......+....+...+.+.+...+      ..+.++..+|..+...+++++|..+
T Consensus       127 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~  191 (388)
T d1w3ba_         127 ALQYNPD---------LYCVRSDLGNLLKALGRLEEAKACYLKAIETQP------NFAVAWSNLGCVFNAQGEIWLAIHH  191 (388)
T ss_dssp             HHHHCTT---------CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             CCCCCCC---------CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC------CHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf             2222222---------222222222222110001356788887402586------1068998636301024719999999


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999970692588999999499999999889999999999999999999830890699999999999999999999
Q 000742          272 YQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSS  351 (1313)
Q Consensus       272 ~~kal~l~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~  351 (1313)
                      +++++++.|.....+...+.++...+++.+|+..+.++.       .+.      ..          ....+..++..+.
T Consensus       192 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~------~~----------~~~~~~~l~~~~~  248 (388)
T d1w3ba_         192 FEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRAL-------SLS------PN----------HAVVHGNLACVYY  248 (388)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHH-------HHC------TT----------CHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH-------HHH------HH----------HHHHHHHHHHHHH
T ss_conf             999998494649999997155220052999999999857-------775------54----------7999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             79989999999999999999807912459999999999999419999999999999999991790458999999999999
Q 000742          352 MIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLD  431 (1313)
Q Consensus       352 ~~~~~~~A~~~~~~a~~l~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~  431 (1313)
                      ..+++++|+.++++++.+      .|..+.++..+|.+|..+|++++|+.++++++...+      ....++..+|.+|.
T Consensus       249 ~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~  316 (388)
T d1w3ba_         249 EQGLIDLAIDTYRRAIEL------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP------THADSLNNLANIKR  316 (388)
T ss_dssp             HTTCHHHHHHHHHHHHHT------CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC------CCCHHHHHHHHHHH
T ss_conf             878999999999999984------999899999999999974879999999986540487------30010157999999


Q ss_pred             HCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             749999999999999999999199267999987548999972039999999999999
Q 000742          432 SNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEARRLQHEID  488 (1313)
Q Consensus       432 ~~g~~~~A~~~~~kAl~l~~~~~~~~~~~~al~~L~~~~~~~~~~~~~a~~~~e~~~  488 (1313)
                      ..|++++|+.+|++++++.++      ...++.++|.++...++. ++|....+...
T Consensus       317 ~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~-~~A~~~~~~al  366 (388)
T d1w3ba_         317 EQGNIEEAVRLYRKALEVFPE------FAAAHSNLASVLQQQGKL-QEALMHYKEAI  366 (388)
T ss_dssp             TTTCHHHHHHHHHHHTTSCTT------CHHHHHHHHHHHHTTTCC-HHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHCCCH-HHHHHHHHHHH
T ss_conf             878999999999999986889------899999999999985999-99999999999

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.96  E-value=7.2e-26  Score=202.40  Aligned_cols=262  Identities=17%  Similarity=0.177  Sum_probs=159.9

Q ss_pred             CCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCC------HHHHHHHHHHHHCC
Q ss_conf             999978899997103279985889803999993699999998731999768994259999------88899999998149
Q 000742          899 NRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSIT------SRTIQKVADALGAE  972 (1313)
Q Consensus       899 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~------~~~~~~l~~~l~~~  972 (1313)
                      +.++......+...+..+..|+.|+|++|.+++.++..++..+..++.|+.|+++++.+.      ..++..+..++..+
T Consensus        13 ~~~~~e~~~~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~   92 (344)
T d2ca6a1          13 DAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC   92 (344)
T ss_dssp             SSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             88998789999999963899788978498377899999999998589988888877754334542106787999887547


Q ss_pred             CCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHH----------HCCCCCEEECCCCCCC
Q ss_conf             996688807888989025999998610488666465479889957999999985----------1598658874577799
Q 000742          973 STLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLA----------KTSCLTHLMLGCTNLG 1042 (1313)
Q Consensus       973 ~~L~~L~Ls~n~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~----------~~~~L~~L~Ls~n~i~ 1042 (1313)
                      ++|++|+|++|. ++..++..+...+..+++|++|++++|.+++.+...++...          ..+.|+.+.+++|.++
T Consensus        93 ~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~  171 (344)
T d2ca6a1          93 PKLHTVRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE  171 (344)
T ss_dssp             TTCCEEECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred             CCCCCCCCCCCC-CCCCCCCCHHHHHCCCCCCHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
T ss_conf             775633000013-4554333101110023432100000246666543111121222211000146764211101365013


Q ss_pred             CCHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHH-HHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             71199999998418994109982579899368999-99997307983389766999993889999998419999624998
Q 000742         1043 SDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHK-FTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLV 1121 (1313)
Q Consensus      1043 ~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~-l~~~l~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~ 1121 (1313)
                      +.++..++..+... +.|+.|+++.|.+++.++.. +...+..+++|+.|+|++|.+++.+...++..+... ..|++|+
T Consensus       172 ~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~-~~L~~L~  249 (344)
T d2ca6a1         172 NGSMKEWAKTFQSH-RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW-PNLRELG  249 (344)
T ss_dssp             GGGHHHHHHHHHHC-TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC-TTCCEEE
T ss_pred             CCCCCCCCCHHHHH-HHHCCCCCCCCCCCCCCCCCCHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCC-CCCHHHH
T ss_conf             55433221111233-321335433322222223200243321101211222333322222222344433232-2111103


Q ss_pred             EECCCCCHHHHHHHHHHHHC--CCCCCEEECCCCCCCHHHHHHH
Q ss_conf             10377998889999998622--9984699734899980335421
Q 000742         1122 LSKCQLGLAGVLQLIKALSE--NDTLEELNLADNASKELTLQQN 1163 (1313)
Q Consensus      1122 Ls~n~i~~~g~~~l~~~l~~--~~~L~~L~Ls~N~i~~~~~~~~ 1163 (1313)
                      |++|.|++.|+..++.++..  ++.|++|+|++|.|++.++..+
T Consensus       250 Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l  293 (344)
T d2ca6a1         250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL  293 (344)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH
T ss_pred             HHCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHH
T ss_conf             00475671566788877631568888989898986980899999

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.8e-23  Score=184.53  Aligned_cols=321  Identities=12%  Similarity=-0.001  Sum_probs=268.0

Q ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999999870799999999999999998627988722688789999997029499999999999999897059
Q 000742           25 QEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASD  104 (1313)
Q Consensus        25 ~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~  104 (1313)
                      ...+.+....|.++...|++++|+.+++++++..+.. +......++..+|.+|..+|++++|+.++ ++++++.+..++
T Consensus         9 ~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~-~~~~~~~a~~~lg~~~~~~g~~~~A~~~~-~~a~~~~~~~~~   86 (366)
T d1hz4a_           9 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPG-WFYSRIVATSVLGEVLHCKGELTRSLALM-QQTEQMARQHDV   86 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHH-HHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHCC
T ss_conf             2139999999999998889999999999998548689-96799999999999999879999999999-999999875011


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf             89999999999999999720597404539999999999999999831599887311049999999999999997099999
Q 000742          105 LVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEE  184 (1313)
Q Consensus       105 ~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~  184 (1313)
                      ......++..++..|...        +++..|...+.+++.+........       .+..+..+..+|.++...|+++.
T Consensus        87 ~~~~~~~~~~~~~~~~~~--------~~~~~a~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~~~~~~  151 (366)
T d1hz4a_          87 WHYALWSLIQQSEILFAQ--------GFLQTAWETQEKAFQLINEQHLEQ-------LPMHEFLVRIRAQLLWAWARLDE  151 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHHHTTCTT-------STHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHCCCCH-------HHHHHHHHHHHHHHHHHHCCHHH
T ss_conf             489999998887887888--------889999988999999867503412-------56788899888789998145666


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHC
Q ss_conf             999999978575220148881589999999999999827899999999999999998101-1427999999999999810
Q 000742          185 AKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEH-CQGEAKGYINLGELHYRVQ  263 (1313)
Q Consensus       185 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~kal~~~~~~~~-~~~~~~~~~~la~~~~~~g  263 (1313)
                      |..++.++....+..    .......++...+..+...+++.++..++.++......... ......++..++.++...+
T Consensus       152 a~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (366)
T d1hz4a_         152 AEASARSGIEVLSSY----QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG  227 (366)
T ss_dssp             HHHHHHHHHHHTTTS----CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             689999988876630----0246899998888888764667888899999999998731157269999999999998604


Q ss_pred             CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             98999999999999999706925889999994999999998899999999999999999998308906999999999999
Q 000742          264 KYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASL  343 (1313)
Q Consensus       264 ~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l  343 (1313)
                      ++++|..++++++...+...                                                            
T Consensus       228 ~~~~a~~~~~~~~~~~~~~~------------------------------------------------------------  247 (366)
T d1hz4a_         228 DKAAAANWLRHTAKPEFANN------------------------------------------------------------  247 (366)
T ss_dssp             CHHHHHHHHHHSCCCCCTTC------------------------------------------------------------
T ss_pred             CHHHHHHHHHHHHHHCCCCC------------------------------------------------------------
T ss_conf             48989999999997622466------------------------------------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             99999999799899999999999999998079124599999999999994199999999999999999917904589999
Q 000742          344 DRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAK  423 (1313)
Q Consensus       344 ~~L~~~~~~~~~~~~A~~~~~~a~~l~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~  423 (1313)
                                                       +.....+..+|.+|...|++++|+.++++++......+..+....++
T Consensus       248 ---------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  294 (366)
T d1hz4a_         248 ---------------------------------HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL  294 (366)
T ss_dssp             ---------------------------------GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ---------------------------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             ---------------------------------67778899999999875879999999999998876426674799999


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf             999999997499999999999999999991992679
Q 000742          424 VNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQ  459 (1313)
Q Consensus       424 ~~lg~~y~~~g~~~~A~~~~~kAl~l~~~~~~~~~~  459 (1313)
                      ..+|.+|...|++++|..+|++|+++.+..+.....
T Consensus       295 ~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~  330 (366)
T d1hz4a_         295 LLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHF  330 (366)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf             999999998789999999999999976531829999

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=3.7e-20  Score=159.93  Aligned_cols=324  Identities=12%  Similarity=0.069  Sum_probs=225.0

Q ss_pred             CHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf             246699999999999980691---99999999999999870799999999999999998627988722688789999997
Q 000742            4 DEMQMSEAKRAYRSAKEEGNR---QEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLR   80 (1313)
Q Consensus         4 ~~~~~~~A~~~l~~a~~~~~~---~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~   80 (1313)
                      ..|++++|++.++++++..|.   ...+.++..+|.+|...|++++|+.+|++++.+.+...+.......+..++..+..
T Consensus        24 ~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (366)
T d1hz4a_          24 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA  103 (366)
T ss_dssp             HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf             88899999999999985486899679999999999999987999999999999999987501148999999888788788


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             029499999999999999897059--899999999999999997205974045399999999999999998315998873
Q 000742           81 LEHFKDALIYQVKKHLELAKDASD--LVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSR  158 (1313)
Q Consensus        81 ~g~~~~A~~~~~~kal~l~~~~~~--~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~  158 (1313)
                      .|++..|...+ .+++.+.+....  ....+..+..+|.+|...        ++++.|..++.++..........     
T Consensus       104 ~~~~~~a~~~~-~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~-----  169 (366)
T d1hz4a_         104 QGFLQTAWETQ-EKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW--------ARLDEAEASARSGIEVLSSYQPQ-----  169 (366)
T ss_dssp             TTCHHHHHHHH-HHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHTTTSCGG-----
T ss_pred             HHHHHHHHHHH-HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH--------CCHHHHHHHHHHHHHHHHHHHHH-----
T ss_conf             88899999889-99999867503412567888998887899981--------45666689999988876630024-----


Q ss_pred             CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             11049999999999999997099999999999978575220148881589999999999999827899999999999999
Q 000742          159 SSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIII  238 (1313)
Q Consensus       159 ~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~kal~~  238 (1313)
                           ....++...+..+...+++.++...+.++.......  ....+....++..++.++...|++++|..++++++..
T Consensus       170 -----~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  242 (366)
T d1hz4a_         170 -----QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG--KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP  242 (366)
T ss_dssp             -----GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             -----689999888888876466788889999999999873--1157269999999999998604489899999999976


Q ss_pred             HHHHCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99810114279999999999998109899999999999999970692588999999499999999889999999999999
Q 000742          239 CKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKK  318 (1313)
Q Consensus       239 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~  318 (1313)
                      .+.  +.......+.++|.+|...|++++|..++++++........                                  
T Consensus       243 ~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------------------------  286 (366)
T d1hz4a_         243 EFA--NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRL----------------------------------  286 (366)
T ss_dssp             CCT--TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------------------------------
T ss_pred             CCC--CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC----------------------------------
T ss_conf             224--66677788999999998758799999999999988764266----------------------------------


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHH
Q ss_conf             99999983089069999999999999999999979989999999999999999807912459999999999999419999
Q 000742          319 LTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNK  398 (1313)
Q Consensus       319 l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~l~~~~~~~~~~a~~~~~lg~~y~~~g~~~~  398 (1313)
                                                                               .+..+.++..+|.+|..+|++++
T Consensus       287 ---------------------------------------------------------~~~~~~~~~~la~~~~~~g~~~~  309 (366)
T d1hz4a_         287 ---------------------------------------------------------MSDLNRNLLLLNQLYWQAGRKSD  309 (366)
T ss_dssp             ---------------------------------------------------------HHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             ---------------------------------------------------------CHHHHHHHHHHHHHHHHCCCHHH
T ss_conf             ---------------------------------------------------------74799999999999998789999


Q ss_pred             HHHHHHHHHHHHHHHCCCHH---HHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             99999999999999179045---89999999999997499999999
Q 000742          399 AIKWYTKSWEMYKSIGNLEG---QALAKVNMGNVLDSNGDWAGALD  441 (1313)
Q Consensus       399 A~~~~~kal~l~~~~~~~~~---~~~~~~~lg~~y~~~g~~~~A~~  441 (1313)
                      |+.++++|+++.+..+....   ....+..+...+...++..++..
T Consensus       310 A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~  355 (366)
T d1hz4a_         310 AQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ  355 (366)
T ss_dssp             HHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             9999999999765318299999999999999999986599869999

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1e-22  Score=179.00  Aligned_cols=216  Identities=15%  Similarity=0.131  Sum_probs=131.6

Q ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf             99999999870799999999999999998627988722688789999997029499999999999999897059899999
Q 000742           31 ANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQR  110 (1313)
Q Consensus        31 ~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~  110 (1313)
                      .+..|..++..|++++|+..|+++++..|.      .+.++..+|.+|..+|++++|+.++ .+++++.|...      .
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~~~~~~A~~~~-~~al~~~p~~~------~   88 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPK------HMEAWQYLGTTQAENEQELLAISAL-RRCLELKPDNQ------T   88 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTT------CHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHCTTCH------H
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHCCCHHHHHHHH-HHHHCCCCCCC------C
T ss_conf             999999999859999999999999986899------8999999999999837758899999-85100222222------2


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             99999999999720597404539999999999999999831599887311049999999999999997099999999999
Q 000742          111 ACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLI  190 (1313)
Q Consensus       111 a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~  190 (1313)
                      ++..+|.+|..+        +++++|+..+++++.+.+...........................+...+.+.+|+..+.
T Consensus        89 ~~~~la~~~~~~--------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  160 (323)
T d1fcha_          89 ALMALAVSFTNE--------SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFL  160 (323)
T ss_dssp             HHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCC--------CCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             222222222222--------211211100026777361067888766400000001000014788887657999999999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf             97857522014888158999999999999982789999999999999999810114279999999999998109899999
Q 000742          191 RGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAIL  270 (1313)
Q Consensus       191 ~al~~~~~~~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  270 (1313)
                      +++.+.+.       ...+.++..+|.++...|++++|+.++++++...+      ..+.++..+|.+|...|++++|+.
T Consensus       161 ~al~~~p~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~  227 (323)
T d1fcha_         161 AAVRLDPT-------SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP------NDYLLWNKLGATLANGNQSEEAVA  227 (323)
T ss_dssp             HHHHHSTT-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHC-------CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC------CCCCCHHHHHHCCCCCCCCHHHHH
T ss_conf             99997130-------12221110368888888877550021112222222------221110133301221111013788


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999999
Q 000742          271 CYQKALNLAQ  280 (1313)
Q Consensus       271 ~~~kal~l~~  280 (1313)
                      +|++++++.|
T Consensus       228 ~~~~al~~~p  237 (323)
T d1fcha_         228 AYRRALELQP  237 (323)
T ss_dssp             HHHHHHHHCT
T ss_pred             HHHHHHHHHH
T ss_conf             8778998843

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.8e-21  Score=168.27  Aligned_cols=248  Identities=15%  Similarity=0.112  Sum_probs=166.2

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             68878999999702949999999999999989705989999999999999999720597404539999999999999999
Q 000742           69 PTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQ  148 (1313)
Q Consensus        69 ~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~  148 (1313)
                      ...+..|..+...|++++|+..| +++++..|+..      .++..+|.+|...        +++++|+.+|.+++++  
T Consensus        20 ~~~~~~g~~~~~~g~~~~A~~~~-~~al~~~P~~~------~a~~~lg~~~~~~--------~~~~~A~~~~~~al~~--   82 (323)
T d1fcha_          20 PQPFEEGLRRLQEGDLPNAVLLF-EAAVQQDPKHM------EAWQYLGTTQAEN--------EQELLAISALRRCLEL--   82 (323)
T ss_dssp             SSHHHHHHHHHHTTCHHHHHHHH-HHHHHSCTTCH------HHHHHHHHHHHHT--------TCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHH-HHHHHHCCCCH------HHHHHHHHHHHHC--------CCHHHHHHHHHHHHCC--
T ss_conf             99999999999859999999999-99998689989------9999999999983--------7758899999851002--


Q ss_pred             HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH------HHHHHHHHHHC
Q ss_conf             831599887311049999999999999997099999999999978575220148881589999------99999999982
Q 000742          149 TLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRL------HHNLGNVYMEL  222 (1313)
Q Consensus       149 ~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~------~~~Lg~~y~~~  222 (1313)
                                   .|.....+..+|.+|...|++++|+..+++++...+..............      .......+...
T Consensus        83 -------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (323)
T d1fcha_          83 -------------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD  149 (323)
T ss_dssp             -------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred             -------------CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf             -------------2222222222222222222112111000267773610678887664000000010000147888876


Q ss_pred             CCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             78999999999999999981011427999999999999810989999999999999997069258899999949999999
Q 000742          223 RMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKA  302 (1313)
Q Consensus       223 g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~~lg~~~~a  302 (1313)
                      +.+.+|+..+.+++.+.+.    ...+.++..+|.++...|++++|+.++++++...|.                     
T Consensus       150 ~~~~~a~~~~~~al~~~p~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---------------------  204 (323)
T d1fcha_         150 SLFLEVKELFLAAVRLDPT----SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN---------------------  204 (323)
T ss_dssp             HHHHHHHHHHHHHHHHSTT----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------------
T ss_pred             HHHHHHHHHHHHHHHHHHC----CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC---------------------
T ss_conf             5799999999999997130----122211103688888888775500211122222222---------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             98899999999999999999998308906999999999999999999997998999999999999999980791245999
Q 000742          303 IEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDS  382 (1313)
Q Consensus       303 ~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~l~~~~~~~~~~a~~  382 (1313)
                                                                                                  .+.+
T Consensus       205 ----------------------------------------------------------------------------~~~~  208 (323)
T d1fcha_         205 ----------------------------------------------------------------------------DYLL  208 (323)
T ss_dssp             ----------------------------------------------------------------------------CHHH
T ss_pred             ----------------------------------------------------------------------------CCCC
T ss_conf             ----------------------------------------------------------------------------2111


Q ss_pred             HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999994199999999999999999917904589999999999997499999999999999999991
Q 000742          383 FLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEA  453 (1313)
Q Consensus       383 ~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~l~~~~  453 (1313)
                      +..+|.+|..+|++++|+.+|++++++.+      ..+.++.++|.+|..+|++++|+.+|++|+++.++.
T Consensus       209 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  273 (323)
T d1fcha_         209 WNKLGATLANGNQSEEAVAAYRRALELQP------GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS  273 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHCCCCCCCCHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf             01333012211110137888778998843------249999999999998789999999999999709757

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=2.5e-17  Score=138.95  Aligned_cols=47  Identities=13%  Similarity=0.007  Sum_probs=18.8

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf             999997029499999999999999897059899999999999999997
Q 000742           75 GEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEM  122 (1313)
Q Consensus        75 g~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l  122 (1313)
                      |.+|...++|++|+.+| .+++++....++....+.++.++|.+|..+
T Consensus        44 a~~y~~~~~~~~A~~~y-~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~   90 (290)
T d1qqea_          44 ATIYRLRKELNLAGDSF-LKAADYQKKAGNEDEAGNTYVEAYKCFKSG   90 (290)
T ss_dssp             HHHHHHTTCTHHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHH-HHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             99999886999999999-999999987599889999999999999980

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.8e-17  Score=140.00  Aligned_cols=208  Identities=8%  Similarity=0.011  Sum_probs=153.6

Q ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999999999987079999999999999999862798872268878999999702-949999999999999989705
Q 000742           25 QEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLE-HFKDALIYQVKKHLELAKDAS  103 (1313)
Q Consensus        25 ~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g-~~~~A~~~~~~kal~l~~~~~  103 (1313)
                      +.-+.++..+|.++...+.+++|+..+++|+++.|..      ..+|+.+|.++..+| ++++|+.++ ++++++.|+..
T Consensus        40 p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~------~~a~~~r~~~l~~l~~~~~eal~~~-~~al~~~p~~~  112 (315)
T d2h6fa1          40 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN------YTVWHFRRVLLKSLQKDLHEEMNYI-TAIIEEQPKNY  112 (315)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCCHHHHHHHH-HHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHH
T ss_conf             7799999999999995886699999999999879887------6999999999998376799999999-99998877422


Q ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf             98999999999999999972059740453999999999999999983159988731104999999999999999709999
Q 000742          104 DLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLE  183 (1313)
Q Consensus       104 ~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~  183 (1313)
                            .++..+|.++..+        |++++|+.++.+++++               .|....+|.++|.++...++++
T Consensus       113 ------~a~~~~~~~~~~l--------~~~~eAl~~~~kal~~---------------dp~n~~a~~~~~~~~~~~~~~~  163 (315)
T d2h6fa1         113 ------QVWHHRRVLVEWL--------RDPSQELEFIADILNQ---------------DAKNYHAWQHRQWVIQEFKLWD  163 (315)
T ss_dssp             ------HHHHHHHHHHHHH--------TCCTTHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHHTCCT
T ss_pred             ------HHHHHHHHHHHHH--------CCHHHHHHHHHHHHHH---------------HHCCHHHHHHHHHHHHHHHHHH
T ss_conf             ------6898875888850--------5378899887555432---------------1004688998877888888667


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf             99999999785752201488815899999999999998278------999999999999999981011427999999999
Q 000742          184 EAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRM------WDKSREHIEQDIIICKKIEHCQGEAKGYINLGE  257 (1313)
Q Consensus       184 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~Lg~~y~~~g~------~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~  257 (1313)
                      +|+..+++++++         ++....+|.++|.++...+.      +++|+.++.+++.+.|      ....++..++.
T Consensus       164 ~Al~~~~~al~~---------~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P------~~~~~~~~l~~  228 (315)
T d2h6fa1         164 NELQYVDQLLKE---------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP------HNESAWNYLKG  228 (315)
T ss_dssp             THHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST------TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHH---------CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC------CCHHHHHHHHH
T ss_conf             899999999987---------974499998899999874563102354776799999998498------85699999877


Q ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             999810989999999999999997069
Q 000742          258 LHYRVQKYDEAILCYQKALNLAQSMED  284 (1313)
Q Consensus       258 ~~~~~g~~~~A~~~~~kal~l~~~~~~  284 (1313)
                      ++... ...++...+++++++.+....
T Consensus       229 ll~~~-~~~~~~~~~~~~~~l~~~~~~  254 (315)
T d2h6fa1         229 ILQDR-GLSKYPNLLNQLLDLQPSHSS  254 (315)
T ss_dssp             HHTTT-CGGGCHHHHHHHHHHTTTCCC
T ss_pred             HHHHC-CHHHHHHHHHHHHHHCCCCCC
T ss_conf             98862-718899999999972877578

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=2.3e-16  Score=131.73  Aligned_cols=228  Identities=10%  Similarity=-0.047  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf             99999999999870799999999999999998627988722688789999997029499999999999999897059899
Q 000742           28 ARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVE  107 (1313)
Q Consensus        28 a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~  107 (1313)
                      +..|...|.+|...++|++|+..|.+++++..+..+....+.++..+|.+|..+|++++|+.+| ++++++.+..+....
T Consensus        37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~-~~a~~~~~~~~~~~~  115 (290)
T d1qqea_          37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL-ENAIQIFTHRGQFRR  115 (290)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHHHHCCCCHH
T ss_conf             9999999999998869999999999999999875998899999999999999808858889999-976677653253205


Q ss_pred             HHHHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf             99999999999999-72059740453999999999999999983159988731104999999999999999709999999
Q 000742          108 QQRACTQLGRTYYE-MFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAK  186 (1313)
Q Consensus       108 ~a~a~~~lg~~y~~-l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~  186 (1313)
                      .+.++..+|.+|.. .        +++++|+.+|++|+++....+..         +....++.++|.+|..+|+|++|+
T Consensus       116 ~~~~~~~l~~~~~~~~--------~~~~~A~~~~~~A~~l~~~~~~~---------~~~~~~~~~la~~~~~~g~y~~A~  178 (290)
T d1qqea_         116 GANFKFELGEILENDL--------HDYAKAIDCYELAGEWYAQDQSV---------ALSNKCFIKCADLKALDGQYIEAS  178 (290)
T ss_dssp             HHHHHHHHHHHHHHTT--------CCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHCCCH---------HHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf             8999999888676478--------78999988999999998733760---------333468899999999817399999


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH--HCC
Q ss_conf             999997857522014888158999999999999982789999999999999999810114279999999999998--109
Q 000742          187 KFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYR--VQK  264 (1313)
Q Consensus       187 ~~~~~al~~~~~~~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~--~g~  264 (1313)
                      ..|++++...+..  ..........+...|.++...+++..|...++++.++.+...+.. ....+..+..++..  .+.
T Consensus       179 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sr-e~~~l~~l~~a~~~~d~e~  255 (290)
T d1qqea_         179 DIYSKLIKSSMGN--RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR-ESNFLKSLIDAVNEGDSEQ  255 (290)
T ss_dssp             HHHHHHHHTTSSC--TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------HHHHHHHHHHHHTTCTTT
T ss_pred             HHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHHHHCCHHH
T ss_conf             9999999868133--245556999999999999984659999999999997597744439-9999999999998368999


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             899999999999
Q 000742          265 YDEAILCYQKAL  276 (1313)
Q Consensus       265 ~~~A~~~~~kal  276 (1313)
                      +.+|+..|.++.
T Consensus       256 ~~eai~~y~~~~  267 (290)
T d1qqea_         256 LSEHCKEFDNFM  267 (290)
T ss_dssp             HHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999998875

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=6.8e-19  Score=150.52  Aligned_cols=323  Identities=20%  Similarity=0.170  Sum_probs=156.4

Q ss_pred             CCEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHH
Q ss_conf             77698248998947889899975149995889802799997899999999971146764419980279999788999971
Q 000742          832 EDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICE  911 (1313)
Q Consensus       832 ~~~L~ls~~~l~~~~~~~l~~~L~~~~~L~~L~Ls~n~l~~~~~~~L~~~~~~~~~~~~l~~L~Ls~n~l~~~~~~~l~~  911 (1313)
                      +.+|+++++++++..      .+...++|++|+|++|.|++-.  .       .....+|+.|++++|.+.....  +  
T Consensus        46 l~~L~l~~~~I~~l~------gl~~L~nL~~L~Ls~N~l~~l~--~-------l~~L~~L~~L~L~~n~i~~i~~--l--  106 (384)
T d2omza2          46 VTTLQADRLGIKSID------GVEYLNNLTQINFSNNQLTDIT--P-------LKNLTKLVDILMNNNQIADITP--L--  106 (384)
T ss_dssp             CCEEECCSSCCCCCT------TGGGCTTCCEEECCSSCCCCCG--G-------GTTCTTCCEEECCSSCCCCCGG--G--
T ss_pred             CCEEECCCCCCCCCC------CCCCCCCCCEEECCCCCCCCCC--C-------CCCCCCCCCCCCCCCCCCCCCC--C--
T ss_conf             789989998987762------4245899998968188179886--3-------3477110103013433322221--1--


Q ss_pred             CCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHH---------------HHHHHCCCCCC
Q ss_conf             032799858898039999936999999987319997689942599998889999---------------99981499966
Q 000742          912 CPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKV---------------ADALGAESTLA  976 (1313)
Q Consensus       912 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l---------------~~~l~~~~~L~  976 (1313)
                        ..+++|+.|+++++.+.+..      .......+..+....+.+........               ...+.......
T Consensus       107 --~~l~~L~~L~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (384)
T d2omza2         107 --ANLTNLTGLTLFNNQITDID------PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLE  178 (384)
T ss_dssp             --TTCTTCCEEECCSSCCCCCG------GGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCC
T ss_pred             --CCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCC
T ss_conf             --12334333443322222222------2222222211213466313100232222112222212322011112454211


Q ss_pred             EEEECCCCCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHCC
Q ss_conf             88807888989025999998610488666465479889957999999985159865887457779971199999998418
Q 000742          977 QLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSR 1056 (1313)
Q Consensus       977 ~L~Ls~n~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~ 1056 (1313)
                      ......|.. .      .......++++..+.++++.++...+     ....++|+.|++++|.+.+.+.      + ..
T Consensus       179 ~~~~~~~~~-~------~~~~~~~l~~~~~l~l~~n~i~~~~~-----~~~~~~L~~L~l~~n~l~~~~~------l-~~  239 (384)
T d2omza2         179 RLDISSNKV-S------DISVLAKLTNLESLIATNNQISDITP-----LGILTNLDELSLNGNQLKDIGT------L-AS  239 (384)
T ss_dssp             EEECCSSCC-C------CCGGGGGCTTCSEEECCSSCCCCCGG-----GGGCTTCCEEECCSSCCCCCGG------G-GG
T ss_pred             CCCCCCCCC-C------CCCCCCCCCCCCEEECCCCCCCCCCC-----CCCCCCCCEEECCCCCCCCCCH------H-HC
T ss_conf             011222433-3------21100223532333035774478786-----4445778788887777789613------4-32


Q ss_pred             CCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHH
Q ss_conf             99410998257989936899999997307983389766999993889999998419999624998103779988899999
Q 000742         1057 AQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLI 1136 (1313)
Q Consensus      1057 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~ 1136 (1313)
                      .+.|+.|+++.|.+++..      .+..+++|+.|++++|.+.....  +   ..  ...++.+.++.|.+.+.      
T Consensus       240 l~~L~~L~l~~n~l~~~~------~~~~~~~L~~L~l~~~~l~~~~~--~---~~--~~~l~~l~~~~n~l~~~------  300 (384)
T d2omza2         240 LTNLTDLDLANNQISNLA------PLSGLTKLTELKLGANQISNISP--L---AG--LTALTNLELNENQLEDI------  300 (384)
T ss_dssp             CTTCSEEECCSSCCCCCG------GGTTCTTCSEEECCSSCCCCCGG--G---TT--CTTCSEEECCSSCCSCC------
T ss_pred             CCCCCHHCCCCCCCCCCC------CCCCCCCCCEEECCCCCCCCCCC--C---CC--CCCCCCCCCCCCCCCCC------
T ss_conf             565341004467447877------53554668775456744578773--2---35--65222233232333332------


Q ss_pred             HHHHCCCCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             98622998469973489998033542100123357765433454445453311110111247778421014678510121
Q 000742         1137 KALSENDTLEELNLADNASKELTLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVE 1216 (1313)
Q Consensus      1137 ~~l~~~~~L~~L~Ls~N~i~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~ 1216 (1313)
                      ..+..++.++.|++++|.+.+...                                    +..+++|+.|++++|.++.+
T Consensus       301 ~~~~~~~~l~~L~ls~n~l~~l~~------------------------------------l~~l~~L~~L~L~~n~l~~l  344 (384)
T d2omza2         301 SPISNLKNLTYLTLYFNNISDISP------------------------------------VSSLTKLQRLFFANNKVSDV  344 (384)
T ss_dssp             GGGGGCTTCSEEECCSSCCSCCGG------------------------------------GGGCTTCCEEECCSSCCCCC
T ss_pred             CCCCHHCCCCEEECCCCCCCCCCC------------------------------------CCCCCCCCEEECCCCCCCCC
T ss_conf             210000246767777887789845------------------------------------36689889898989989997


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEECCCCC
Q ss_conf             0013689876543555886300048999999761456763018888
Q 000742         1217 SAASGFDNSCTSSCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNN 1262 (1313)
Q Consensus      1217 ~~~~~~~~~~~~~L~~L~L~~n~~~~~l~~~l~~~~~L~~L~Ls~N 1262 (1313)
                      ..    ...+ ++|+.|++++|++++..|  +..+++|+.|+|++|
T Consensus       345 ~~----l~~l-~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         345 SS----LANL-TNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GG----GGGC-TTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             HH----HCCC-CCCCEEECCCCCCCCCHH--HCCCCCCCEEECCCC
T ss_conf             46----7089-999989897995899800--003999999639789

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=1e-17  Score=141.72  Aligned_cols=322  Identities=19%  Similarity=0.145  Sum_probs=185.6

Q ss_pred             CCCCEEEECCCCCCH-HHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHH
Q ss_conf             995889802799997-8999999999711467644199802799997889999710327998588980399999369999
Q 000742          858 KTVALLDLSHNLLGN-GTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSY  936 (1313)
Q Consensus       858 ~~L~~L~Ls~n~l~~-~~~~~L~~~~~~~~~~~~l~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~  936 (1313)
                      .+|++|+++++.|.+ +|+.          ...++++|+|++|+|+....  +.    .+++|++|++++|.+.+.    
T Consensus        44 ~~l~~L~l~~~~I~~l~gl~----------~L~nL~~L~Ls~N~l~~l~~--l~----~L~~L~~L~L~~n~i~~i----  103 (384)
T d2omza2          44 DQVTTLQADRLGIKSIDGVE----------YLNNLTQINFSNNQLTDITP--LK----NLTKLVDILMNNNQIADI----  103 (384)
T ss_dssp             TTCCEEECCSSCCCCCTTGG----------GCTTCCEEECCSSCCCCCGG--GT----TCTTCCEEECCSSCCCCC----
T ss_pred             CCCCEEECCCCCCCCCCCCC----------CCCCCCEEECCCCCCCCCCC--CC----CCCCCCCCCCCCCCCCCC----
T ss_conf             78789989998987762424----------58999989681881798863--34----771101030134333222----


Q ss_pred             HHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCH
Q ss_conf             99987319997689942599998889999999814999668880788898902599999861048866646547988995
Q 000742          937 LSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSK 1016 (1313)
Q Consensus       937 l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~ 1016 (1313)
                        ..+..++.|+.|++.++.+++...      ......+..+....|.+.....     ..................+..
T Consensus       104 --~~l~~l~~L~~L~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~  170 (384)
T d2omza2         104 --TPLANLTNLTGLTLFNNQITDIDP------LKNLTNLNRLELSSNTISDISA-----LSGLTSLQQLSFGNQVTDLKP  170 (384)
T ss_dssp             --GGGTTCTTCCEEECCSSCCCCCGG------GTTCTTCSEEEEEEEEECCCGG-----GTTCTTCSEEEEEESCCCCGG
T ss_pred             --CCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCHHHH
T ss_conf             --211123343334433222222222------2222222112134663131002-----322221122222123220111


Q ss_pred             HHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCC
Q ss_conf             79999999851598658874577799711999999984189941099825798993689999999730798338976699
Q 000742         1017 PVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGN 1096 (1313)
Q Consensus      1017 ~~~~~l~~~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~LdLs~N 1096 (1313)
                              +.............+......       .....+.+..++++.|.+++..      ....+++|+.|++++|
T Consensus       171 --------~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~l~l~~n~i~~~~------~~~~~~~L~~L~l~~n  229 (384)
T d2omza2         171 --------LANLTTLERLDISSNKVSDIS-------VLAKLTNLESLIATNNQISDIT------PLGILTNLDELSLNGN  229 (384)
T ss_dssp             --------GTTCTTCCEEECCSSCCCCCG-------GGGGCTTCSEEECCSSCCCCCG------GGGGCTTCCEEECCSS
T ss_pred             --------HCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCEEECCCCCCCCCC------CCCCCCCCCEEECCCC
T ss_conf             --------124542110112224333211-------0022353233303577447878------6444577878888777


Q ss_pred             CCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf             99938899999984199996249981037799888999999862299846997348999803354210012335776543
Q 000742         1097 PIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKELTLQQNLSSVNSENLQPAL 1176 (1313)
Q Consensus      1097 ~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~~~~~l~~~~l~~~~ 1176 (1313)
                      .+.+.+  .+.. +    ..|+.|++++|.+++.     + .+..+++|+.|++++|.+.+......+..+..+.+..|.
T Consensus       230 ~l~~~~--~l~~-l----~~L~~L~l~~n~l~~~-----~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~  296 (384)
T d2omza2         230 QLKDIG--TLAS-L----TNLTDLDLANNQISNL-----A-PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ  296 (384)
T ss_dssp             CCCCCG--GGGG-C----TTCSEEECCSSCCCCC-----G-GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC
T ss_pred             CCCCCC--HHHC-C----CCCCHHCCCCCCCCCC-----C-CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             778961--3432-5----6534100446744787-----7-535546687754567445787732356522223323233


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCE
Q ss_conf             34544454533111101112477784210146785101210013689876543555886300048999999761456763
Q 000742         1177 KTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFDNSCTSSCQKNSSFECQFVQELSSAIGMAKPLQL 1256 (1313)
Q Consensus      1177 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~l~~~l~~~~~L~~ 1256 (1313)
                      ++.+.              .+..+++++.+++++|.++++.+    ...+ ++|++|++++|+++. ++ .+..+++|+.
T Consensus       297 l~~~~--------------~~~~~~~l~~L~ls~n~l~~l~~----l~~l-~~L~~L~L~~n~l~~-l~-~l~~l~~L~~  355 (384)
T d2omza2         297 LEDIS--------------PISNLKNLTYLTLYFNNISDISP----VSSL-TKLQRLFFANNKVSD-VS-SLANLTNINW  355 (384)
T ss_dssp             CSCCG--------------GGGGCTTCSEEECCSSCCSCCGG----GGGC-TTCCEEECCSSCCCC-CG-GGGGCTTCCE
T ss_pred             CCCCC--------------CCCHHCCCCEEECCCCCCCCCCC----CCCC-CCCCEEECCCCCCCC-CH-HHCCCCCCCE
T ss_conf             33322--------------10000246767777887789845----3668-988989898998999-74-6708999998


Q ss_pred             ECCCCCCCCHH
Q ss_conf             01888888889
Q 000742         1257 LDLSNNGFSTQ 1267 (1313)
Q Consensus      1257 L~Ls~N~~~~~ 1267 (1313)
                      |++++|.+++.
T Consensus       356 L~l~~N~l~~l  366 (384)
T d2omza2         356 LSAGHNQISDL  366 (384)
T ss_dssp             EECCSSCCCBC
T ss_pred             EECCCCCCCCC
T ss_conf             98979958998

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=7.3e-17  Score=135.45  Aligned_cols=169  Identities=10%  Similarity=0.064  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHHHHH
Q ss_conf             2688789999997029499999999999999897059899999999999999997205974045-399999999999999
Q 000742           68 LPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHY-SIRNAKKYFKSAMKL  146 (1313)
Q Consensus        68 ~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~-~~~~A~~~~~~Al~l  146 (1313)
                      ..++..+|.++...+.+++|+..+ ++++++.|...      .+|.++|.++..+        + ++++|+.++++++++
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~-~~ai~lnP~~~------~a~~~r~~~l~~l--------~~~~~eal~~~~~al~~  107 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLT-RDAIELNAANY------TVWHFRRVLLKSL--------QKDLHEEMNYITAIIEE  107 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHH-HHHHHHCTTCH------HHHHHHHHHHHHT--------TCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHCCCCH------HHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHH
T ss_conf             999999999999588669999999-99998798876------9999999999983--------76799999999999988


Q ss_pred             HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHH
Q ss_conf             99831599887311049999999999999997099999999999978575220148881589999999999999827899
Q 000742          147 AQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWD  226 (1313)
Q Consensus       147 ~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~Lg~~y~~~g~~~  226 (1313)
                                     .|....++.++|.++..+|++++|+.++.+++++.+         ....+|.++|.++...|+++
T Consensus       108 ---------------~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp---------~n~~a~~~~~~~~~~~~~~~  163 (315)
T d2h6fa1         108 ---------------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA---------KNYHAWQHRQWVIQEFKLWD  163 (315)
T ss_dssp             ---------------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT---------TCHHHHHHHHHHHHHHTCCT
T ss_pred             ---------------HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH---------CCHHHHHHHHHHHHHHHHHH
T ss_conf             ---------------774226898875888850537889988755543210---------04688998877888888667


Q ss_pred             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC------HHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999810114279999999999998109------89999999999999997
Q 000742          227 KSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQK------YDEAILCYQKALNLAQS  281 (1313)
Q Consensus       227 ~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~kal~l~~~  281 (1313)
                      +|+.++++++++.+      ....+|.++|.++...+.      +++|+.++.+++++.|.
T Consensus       164 ~Al~~~~~al~~~p------~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~  218 (315)
T d2h6fa1         164 NELQYVDQLLKEDV------RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH  218 (315)
T ss_dssp             THHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHCC------CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf             89999999998797------44999988999998745631023547767999999984988

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.5e-17  Score=138.94  Aligned_cols=234  Identities=23%  Similarity=0.243  Sum_probs=116.2

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf             88980279999789999999997114676441998027999978899997103279985889803999993699999998
Q 000742          861 ALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTI  940 (1313)
Q Consensus       861 ~~L~Ls~n~l~~~~~~~L~~~~~~~~~~~~l~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~  940 (1313)
                      +.|||+++.+....+..+...        ....+.++...+.....    . .....+|++|||+++.+++.+   +...
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~~--------~~~~lrl~~~~~~~~~~----~-~~~~~~L~~LdLs~~~i~~~~---l~~l   66 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLSQ--------GVIAFRCPRSFMDQPLA----E-HFSPFRVQHMDLSNSVIEVST---LHGI   66 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHHT--------TCSEEECTTCEECSCCC----S-CCCCBCCCEEECTTCEECHHH---HHHH
T ss_pred             CEEECCCCCCCCHHHHHHHHC--------CCEEEECCCCCCCCCHH----H-HCCCCCCCEEECCCCCCCHHH---HHHH
T ss_conf             779789997881479998745--------54274652333455224----4-256787887889898457779---9999


Q ss_pred             HHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEECCCCC-CCHHHH
Q ss_conf             7319997689942599998889999999814999668880788898902599999861048866646547988-995799
Q 000742          941 LKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLK-LSKPVV 1019 (1313)
Q Consensus       941 l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~-l~~~~~ 1019 (1313)
                      +..|++|+.|+|++|.+++.++..    +..+++|++|+++++..+++.++..+..   .+++|++|++++|. +++.+.
T Consensus        67 ~~~c~~L~~L~L~~~~l~~~~~~~----l~~~~~L~~L~Ls~c~~itd~~l~~l~~---~~~~L~~L~ls~c~~~~~~~~  139 (284)
T d2astb2          67 LSQCSKLQNLSLEGLRLSDPIVNT----LAKNSNLVRLNLSGCSGFSEFALQTLLS---SCSRLDELNLSWCFDFTEKHV  139 (284)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHH----HTTCTTCSEEECTTCBSCCHHHHHHHHH---HCTTCCEEECCCCTTCCHHHH
T ss_pred             HHHCCCCCCCCCCCCCCCCHHHHH----HHCCCCCCCCCCCCCCCCCCCCCCHHHH---HHHHCCCCCCCCCCCCCCCCC
T ss_conf             974877651452346798678999----8518997571510013412355403657---887435652245332333220


Q ss_pred             HHHHHHHHCCCCCEEECCCC--CCCCCHHHHHHHHHHCCCCCCCEEECCCCC-CCHHHHHHHHHHHHCCCCCCEEECCCC
Q ss_conf             99999851598658874577--799711999999984189941099825798-993689999999730798338976699
Q 000742         1020 DRLCQLAKTSCLTHLMLGCT--NLGSDGSLQLVESLFSRAQESVKLDLSYCG-LESTCIHKFTASVSLVHGILELNLGGN 1096 (1313)
Q Consensus      1020 ~~l~~~~~~~~L~~L~Ls~n--~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~LdLs~N 1096 (1313)
                      ..... ...+.|+.|+++++  .+++.++..++.    .+++|++|++++|. +++.++..    +..+++|++|+|++|
T Consensus       140 ~~~~~-~~~~~L~~L~l~~~~~~i~~~~l~~l~~----~~~~L~~L~L~~~~~itd~~~~~----l~~~~~L~~L~L~~C  210 (284)
T d2astb2         140 QVAVA-HVSETITQLNLSGYRKNLQKSDLSTLVR----RCPNLVHLDLSDSVMLKNDCFQE----FFQLNYLQHLSLSRC  210 (284)
T ss_dssp             HHHHH-HSCTTCCEEECCSCGGGSCHHHHHHHHH----HCTTCSEEECTTCTTCCGGGGGG----GGGCTTCCEEECTTC
T ss_pred             HHHHC-CCCCCCCHHHHCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCHHHHH----HCCCCCCCEEECCCC
T ss_conf             00100-0111110122135542444443434232----32221235532234778303333----213576877989999


Q ss_pred             C-CCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHH
Q ss_conf             9-99388999999841999962499810377998889
Q 000742         1097 P-IMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGV 1132 (1313)
Q Consensus      1097 ~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~ 1132 (1313)
                      . +++.++..++..   |  .|+.|++++| +++.++
T Consensus       211 ~~i~~~~l~~L~~~---~--~L~~L~l~~~-~~d~~l  241 (284)
T d2astb2         211 YDIIPETLLELGEI---P--TLKTLQVFGI-VPDGTL  241 (284)
T ss_dssp             TTCCGGGGGGGGGC---T--TCCEEECTTS-SCTTCH
T ss_pred             CCCCHHHHHHHHCC---C--CCCEEEEECC-CCHHHH
T ss_conf             97873789997269---9--9898964488-898999

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=1.4e-16  Score=133.31  Aligned_cols=125  Identities=12%  Similarity=-0.023  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             53999999999999999983159988731104999999999999999709999999999997857522014888158999
Q 000742          131 YSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSR  210 (1313)
Q Consensus       131 ~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  210 (1313)
                      .+.+.|+..+.+++....           ...+..+.+++.+|.+|...|++++|+..|++++.+.+         ..+.
T Consensus        13 ~~~e~al~~~~e~l~~~~-----------~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p---------~~~~   72 (259)
T d1xnfa_          13 LQQEVILARMEQILASRA-----------LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP---------DMPE   72 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSC-----------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC---------CCHH
T ss_pred             HHHHHHHHHHHHHHHHHH-----------CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC---------CCHH
T ss_conf             799999999999987633-----------69999999999999999987999999999998543499---------9889


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf             99999999998278999999999999999981011427999999999999810989999999999999997
Q 000742          211 LHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQS  281 (1313)
Q Consensus       211 ~~~~Lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~l~~~  281 (1313)
                      ++.++|.+|..+|++++|+.+|++++.+.|      ..+.++.++|.+|..+|++++|+..++++++..|.
T Consensus        73 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  137 (259)
T d1xnfa_          73 VFNYLGIYLTQAGNFDAAYEAFDSVLELDP------TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN  137 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             996004278887778875234468999876------11115888999999876679999999999865300

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=8.6e-17  Score=134.91  Aligned_cols=236  Identities=20%  Similarity=0.218  Sum_probs=146.3

Q ss_pred             EEEECCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf             19980279999788999971032799858898039999936999999987319997689942599998889999999814
Q 000742          892 LTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGA  971 (1313)
Q Consensus       892 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~  971 (1313)
                      ++|||+++.+.+..+..+..     ..+..+.++...+...    +.. ......|++|++++|.++...+..+   +..
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-----~~~~~lrl~~~~~~~~----~~~-~~~~~~L~~LdLs~~~i~~~~l~~l---~~~   69 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-----QGVIAFRCPRSFMDQP----LAE-HFSPFRVQHMDLSNSVIEVSTLHGI---LSQ   69 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-----TTCSEEECTTCEECSC----CCS-CCCCBCCCEEECTTCEECHHHHHHH---HTT
T ss_pred             CEEECCCCCCCCHHHHHHHH-----CCCEEEECCCCCCCCC----HHH-HCCCCCCCEEECCCCCCCHHHHHHH---HHH
T ss_conf             77978999788147999874-----5542746523334552----244-2567878878898984577799999---974


Q ss_pred             CCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEECCCC-CCCHHHHHHHHHHHHCCCCCEEECCCC-CCCCCHHHHH
Q ss_conf             99966888078889890259999986104886664654798-899579999999851598658874577-7997119999
Q 000742          972 ESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGL-KLSKPVVDRLCQLAKTSCLTHLMLGCT-NLGSDGSLQL 1049 (1313)
Q Consensus       972 ~~~L~~L~Ls~n~~~~~~~~~~l~~~l~~~~~L~~L~L~~~-~l~~~~~~~l~~~~~~~~L~~L~Ls~n-~i~~~~~~~l 1049 (1313)
                      +++|++|+++++. +++..    +..+..+++|+.|++++| .+++.++..+..  ..+.|++|++++| .+++.++..+
T Consensus        70 c~~L~~L~L~~~~-l~~~~----~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~--~~~~L~~L~ls~c~~~~~~~~~~~  142 (284)
T d2astb2          70 CSKLQNLSLEGLR-LSDPI----VNTLAKNSNLVRLNLSGCSGFSEFALQTLLS--SCSRLDELNLSWCFDFTEKHVQVA  142 (284)
T ss_dssp             BCCCSEEECTTCB-CCHHH----HHHHTTCTTCSEEECTTCBSCCHHHHHHHHH--HCTTCCEEECCCCTTCCHHHHHHH
T ss_pred             CCCCCCCCCCCCC-CCCHH----HHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH--HHHHCCCCCCCCCCCCCCCCCHHH
T ss_conf             8776514523467-98678----9998518997571510013412355403657--887435652245332333220001


Q ss_pred             HHHHHCCCCCCCEEECCCC--CCCHHHHHHHHHHHHCCCCCCEEECCCCC-CCHHHHHHHHHHHCCCCCCEEEEEEECC-
Q ss_conf             9998418994109982579--89936899999997307983389766999-9938899999984199996249981037-
Q 000742         1050 VESLFSRAQESVKLDLSYC--GLESTCIHKFTASVSLVHGILELNLGGNP-IMKEGANALASLLMNPQCCLKVLVLSKC- 1125 (1313)
Q Consensus      1050 ~~~l~~~~~~L~~L~Ls~n--~l~~~~~~~l~~~l~~~~~L~~LdLs~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~n- 1125 (1313)
                      .   ...++.|+.|++++|  .+++.++..+   +..+++|++|++++|. +++.++..+...   +  +|++|+|++| 
T Consensus       143 ~---~~~~~~L~~L~l~~~~~~i~~~~l~~l---~~~~~~L~~L~L~~~~~itd~~~~~l~~~---~--~L~~L~L~~C~  211 (284)
T d2astb2         143 V---AHVSETITQLNLSGYRKNLQKSDLSTL---VRRCPNLVHLDLSDSVMLKNDCFQEFFQL---N--YLQHLSLSRCY  211 (284)
T ss_dssp             H---HHSCTTCCEEECCSCGGGSCHHHHHHH---HHHCTTCSEEECTTCTTCCGGGGGGGGGC---T--TCCEEECTTCT
T ss_pred             H---CCCCCCCCHHHHCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCHHHHHHCCC---C--CCCEEECCCCC
T ss_conf             0---001111101221355424444434342---32322212355322347783033332135---7--68779899999


Q ss_pred             CCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHH
Q ss_conf             79988899999986229984699734899980335421
Q 000742         1126 QLGLAGVLQLIKALSENDTLEELNLADNASKELTLQQN 1163 (1313)
Q Consensus      1126 ~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~~ 1163 (1313)
                      .|++.++..    +..+++|+.|+++++ +++.++..+
T Consensus       212 ~i~~~~l~~----L~~~~~L~~L~l~~~-~~d~~l~~l  244 (284)
T d2astb2         212 DIIPETLLE----LGEIPTLKTLQVFGI-VPDGTLQLL  244 (284)
T ss_dssp             TCCGGGGGG----GGGCTTCCEEECTTS-SCTTCHHHH
T ss_pred             CCCHHHHHH----HHCCCCCCEEEEECC-CCHHHHHHH
T ss_conf             787378999----726999898964488-898999999

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=5.2e-16  Score=129.09  Aligned_cols=226  Identities=13%  Similarity=0.052  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             669999999999998069--199999999999999870799999999999999998627988722688789999997029
Q 000742            6 MQMSEAKRAYRSAKEEGN--RQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH   83 (1313)
Q Consensus         6 ~~~~~A~~~l~~a~~~~~--~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~   83 (1313)
                      .+.+.|+..+.++....+  +...+.+++.+|.+|...|++++|+..|++++.+.+.      .+.+++.+|.+|..+|+
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~------~~~a~~~lg~~~~~~g~   86 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD------MPEVFNYLGIYLTQAGN   86 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC------CHHHHHHHCHHHHHHHH
T ss_conf             799999999999987633699999999999999999879999999999985434999------88999600427888777


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf             49999999999999989705989999999999999999720597404539999999999999999831599887311049
Q 000742           84 FKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLK  163 (1313)
Q Consensus        84 ~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p  163 (1313)
                      +++|+.+| ++++++.|...      .++.++|.+|..+        |++++|+..|+++++..+               
T Consensus        87 ~~~A~~~~-~~al~~~p~~~------~a~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p---------------  136 (259)
T d1xnfa_          87 FDAAYEAF-DSVLELDPTYN------YAHLNRGIALYYG--------GRDKLAQDDLLAFYQDDP---------------  136 (259)
T ss_dssp             HHHHHHHH-HHHHHHCTTCT------HHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCT---------------
T ss_pred             HHHHHHHH-HHHHHHHHHHH------HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHCC---------------
T ss_conf             88752344-68999876111------1588899999987--------667999999999986530---------------


Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999999999709999999999997857522014888158999999999999982789999999999999999810
Q 000742          164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIE  243 (1313)
Q Consensus       164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~kal~~~~~~~  243 (1313)
                      ........++..+...+..+.+...........      ...+........++. ....+.++.+...+..+....+   
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---  206 (259)
T d1xnfa_         137 NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD------KEQWGWNIVEFYLGN-ISEQTLMERLKADATDNTSLAE---  206 (259)
T ss_dssp             TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC------CCSTHHHHHHHHTTS-SCHHHHHHHHHHHCCSHHHHHH---
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCC---
T ss_conf             007888999999988535878999998764031------444345577888888-7777789999999998664084---


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             1142799999999999981098999999999999999
Q 000742          244 HCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQ  280 (1313)
Q Consensus       244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~l~~  280 (1313)
                         ....+++++|.+|...|++++|+.+|++|+...|
T Consensus       207 ---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  240 (259)
T d1xnfa_         207 ---HLSETNFYLGKYYLSLGDLDSATALFKLAVANNV  240 (259)
T ss_dssp             ---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             ---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf             ---5099999999999987899999999999998399

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=9.8e-17  Score=134.48  Aligned_cols=233  Identities=8%  Similarity=-0.109  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf             539999999999999999831599887311049999999999999997099--999999999978575220148881589
Q 000742          131 YSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDN--LEEAKKFLIRGLEICNEEEVSEDDDGR  208 (1313)
Q Consensus       131 ~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~  208 (1313)
                      +.+++|+.+++++++.               .|....++..+|.++...++  +++|+..+++++...+.        ..
T Consensus        87 ~~~~~al~~~~~~l~~---------------~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~--------~~  143 (334)
T d1dcea1          87 ALVKAELGFLESCLRV---------------NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER--------NF  143 (334)
T ss_dssp             HHHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT--------CH
T ss_pred             HHHHHHHHHHHHHHHH---------------CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCH--------HH
T ss_conf             7899999999999986---------------888679898864899884304289999999999855921--------21


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf             99999999999982789999999999999999810114279999999999998109899999999999999970692588
Q 000742          209 SRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDAL  288 (1313)
Q Consensus       209 ~~~~~~Lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~l~~~~~~~~~~  288 (1313)
                      ...+...|.++...+.+++|+.++++++.+.+      ....++.++|.++..+|++++|+..+.+++.+.+....... 
T Consensus       144 ~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p------~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-  216 (334)
T d1dcea1         144 HCWDYRRFVAAQAAVAPAEELAFTDSLITRNF------SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQ-  216 (334)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC------CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC------CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf             11105789998744552899999999887189------87999999999999826889899988776776899999999-


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999949999999988999999999999999999983089069999999999999999999979989999999999999
Q 000742          289 ASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKR  368 (1313)
Q Consensus       289 ~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~  368 (1313)
                         .+..+                                                         +.+..+...+.+++.
T Consensus       217 ---~~~~l---------------------------------------------------------~~~~~a~~~~~~~l~  236 (334)
T d1dcea1         217 ---NAFFT---------------------------------------------------------DPNDQSAWFYHRWLL  236 (334)
T ss_dssp             ---HHHHH---------------------------------------------------------CSSCSHHHHHHHHHH
T ss_pred             ---HHHHH---------------------------------------------------------CCHHHHHHHHHHHHH
T ss_conf             ---99882---------------------------------------------------------441488999998877


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             99980791245999999999999941999999999999999999179045899999999999974999999999999999
Q 000742          369 IASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYR  448 (1313)
Q Consensus       369 l~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~  448 (1313)
                            ..+.....+..+|.++...+++.+|+..+.++++..      +....++..+|.+|..+|++++|+.+|++|++
T Consensus       237 ------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~  304 (334)
T d1dcea1         237 ------GRAEPLFRCELSVEKSTVLQSELESCKELQELEPEN------KWCLLTIILLMRALDPLLYEKETLQYFSTLKA  304 (334)
T ss_dssp             ------SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred             ------HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             ------186605678879999999866999999999887629------13799999999999878999999999999998


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             99991992679999875489999
Q 000742          449 IAVEANLPSVQLSALENMHYSHM  471 (1313)
Q Consensus       449 l~~~~~~~~~~~~al~~L~~~~~  471 (1313)
                      +..      .....|..|+..+.
T Consensus       305 ldP------~~~~y~~~L~~~~~  321 (334)
T d1dcea1         305 VDP------MRAAYLDDLRSKFL  321 (334)
T ss_dssp             HCG------GGHHHHHHHHHHHH
T ss_pred             HCC------CCHHHHHHHHHHHH
T ss_conf             796------63999999999986

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=9e-17  Score=134.75  Aligned_cols=281  Identities=8%  Similarity=-0.039  Sum_probs=207.8

Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999870799999999999999998627988722688789999997----------029499999999999999897
Q 000742           32 NVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLR----------LEHFKDALIYQVKKHLELAKD  101 (1313)
Q Consensus        32 ~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----------~g~~~~A~~~~~~kal~l~~~  101 (1313)
                      ..++......+..++|+..++++++..|..      ..+|..++.++..          .|.+.+|+.++ +++++..|+
T Consensus        33 ~~~~~~~~~~~~~~~al~~~~~~l~~~P~~------~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~-~~~l~~~pk  105 (334)
T d1dcea1          33 QAVFQKRQAGELDESVLELTSQILGANPDF------ATLWNCRREVLQHLETEKSPEESAALVKAELGFL-ESCLRVNPK  105 (334)
T ss_dssp             HHHHHHHHTTCCSHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH-HHHHHHCTT
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HHHHHHCCC
T ss_conf             999999865656699999999999988785------8999999999999765003477877899999999-999986888


Q ss_pred             HCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH-HHHHHHHHHHCC
Q ss_conf             0598999999999999999972059740453999999999999999983159988731104999999-999999999709
Q 000742          102 ASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDA-HNNIGMLQMELD  180 (1313)
Q Consensus       102 ~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~-~~~la~~y~~~g  180 (1313)
                      ..      .++..+|.++..+      ..+++++|+..+.+++....               ....+ +...|.++...+
T Consensus       106 ~~------~~~~~~~~~~~~~------~~~~~~~a~~~~~~al~~~~---------------~~~~~~~~~~~~~~~~~~  158 (334)
T d1dcea1         106 SY------GTWHHRCWLLSRL------PEPNWARELELCARFLEADE---------------RNFHCWDYRRFVAAQAAV  158 (334)
T ss_dssp             CH------HHHHHHHHHHHTC------SSCCHHHHHHHHHHHHHHCT---------------TCHHHHHHHHHHHHHTCC
T ss_pred             CH------HHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHHCC---------------HHHHHHHHHHHHHHHHCC
T ss_conf             67------9898864899884------30428999999999985592---------------121111057899987445


Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999785752201488815899999999999998278999999999999999981011427999999999999
Q 000742          181 NLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHY  260 (1313)
Q Consensus       181 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~  260 (1313)
                      .+++|+.++++++.+         ++....+|.++|.++..+|++++|+..+++++.+.+.      ...    ....+.
T Consensus       159 ~~~~Al~~~~~~i~~---------~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~----~~~~~~  219 (334)
T d1dcea1         159 APAEELAFTDSLITR---------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLK------ELE----LVQNAF  219 (334)
T ss_dssp             CHHHHHHHHHTTTTT---------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHH------HHH----HHHHHH
T ss_pred             CCHHHHHHHHHHHHC---------CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH------HHH----HHHHHH
T ss_conf             528999999998871---------8987999999999999826889899988776776899------999----999998


Q ss_pred             HHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             81098999999999999999706925889999994999999998899999999999999999998308906999999999
Q 000742          261 RVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQN  340 (1313)
Q Consensus       261 ~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~  340 (1313)
                      ..+..++|...+.+++...+.........+..+..+++..+++..+.++                               
T Consensus       220 ~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------------------------------  268 (334)
T d1dcea1         220 FTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQEL-------------------------------  268 (334)
T ss_dssp             HHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHH-------------------------------
T ss_pred             HHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------
T ss_conf             8244148899999887718660567887999999986699999999988-------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf             99999999999799899999999999999998079124599999999999994199999999999999999917904589
Q 000742          341 ASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQA  420 (1313)
Q Consensus       341 ~~l~~L~~~~~~~~~~~~A~~~~~~a~~l~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~  420 (1313)
                                                      ....|..+.++..+|.+|..+|++++|+.+|++++++.|      ...
T Consensus       269 --------------------------------~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP------~~~  310 (334)
T d1dcea1         269 --------------------------------EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP------MRA  310 (334)
T ss_dssp             --------------------------------CTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG------GGH
T ss_pred             --------------------------------HHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC------CCH
T ss_conf             --------------------------------762913799999999999878999999999999998796------639


Q ss_pred             HHHHHHHHHHHHCC
Q ss_conf             99999999999749
Q 000742          421 LAKVNMGNVLDSNG  434 (1313)
Q Consensus       421 ~~~~~lg~~y~~~g  434 (1313)
                      ..|..++..+....
T Consensus       311 ~y~~~L~~~~~~e~  324 (334)
T d1dcea1         311 AYLDDLRSKFLLEN  324 (334)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999999986765

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.3e-15  Score=124.36  Aligned_cols=219  Identities=7%  Similarity=0.006  Sum_probs=159.1

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf             99999999999806919999999999999987079999999999999999862798872268878999999702949999
Q 000742            9 SEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDAL   88 (1313)
Q Consensus         9 ~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~   88 (1313)
                      -+|.++|++|.+..|....+  +..+|.+|..++++++|   |++++...++.      +..+...+...  ...|..++
T Consensus         3 ~eA~q~~~qA~~l~p~~a~a--~~~la~~~~~~~~l~ea---ye~~i~~dp~~------a~~~~~e~~Lw--~~~y~~~i   69 (497)
T d1ya0a1           3 LQSAQYLRQAEVLKADMTDS--KLGPAEVWTSRQALQDL---YQKMLVTDLEY------ALDKKVEQDLW--NHAFKNQI   69 (497)
T ss_dssp             HHHHHHHHHHHHHHGGGTCS--SSCSSSSHHHHHHHHHH---HHHHHHHCHHH------HHHHTHHHHHH--HHHTHHHH
T ss_pred             HHHHHHHHHHHHCCCCCHHH--HHHHHHHHHHHCHHHHH---HHHHHHCCHHH------HHHHHHHHHHH--HHHHHHHH
T ss_conf             89999999998719997999--95199999997629999---99998749301------99985799999--99999999


Q ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf             99999999998970598999999999999999972059740453999999999999999983159988731104999999
Q 000742           89 IYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDA  168 (1313)
Q Consensus        89 ~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~  168 (1313)
                      +.+ ++..+.........   ......+.++...        +.|+.|+..+.+++.+               .|.....
T Consensus        70 e~~-r~~~k~~~~~~~~~---~~~~~~~~l~~a~--------~~Y~~ai~~l~~~~~l---------------~~~~~~~  122 (497)
T d1ya0a1          70 TTL-QGQAKNRANPNRSE---VQANLSLFLEAAS--------GFYTQLLQELCTVFNV---------------DLPCRVK  122 (497)
T ss_dssp             HHH-HHHHSCSSCTTTTH---HHHHHHHHHHHHH--------HHHHHHHHHHTC--------------------------
T ss_pred             HHH-HHHCCCCCCCCHHH---HHHHHHHHHHHHH--------HHHHHHHHHHHHHHCC---------------CHHHHHH
T ss_conf             999-98561645843799---9999999999999--------9999999999998789---------------9113999


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHH
Q ss_conf             99999999970999999999999785752201488815899999999999998278999999999999999981011427
Q 000742          169 HNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGE  248 (1313)
Q Consensus       169 ~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~  248 (1313)
                      +.++|..+...+++++|+..+.+++....           ..++.++|.++...|++++|+.+|++|+.+.|      ..
T Consensus       123 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~-----------~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P------~~  185 (497)
T d1ya0a1         123 SSQLGIISNKQTHTSAIVKPQSSSCSYIC-----------QHCLVHLGDIARYRNQTSQAESYYRHAAQLVP------SN  185 (497)
T ss_dssp             --------------------CCHHHHHHH-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TB
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHCCCH-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC------CC
T ss_conf             99857998758999999999998827889-----------99999999999980247899999999998789------96


Q ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             999999999999810989999999999999997069
Q 000742          249 AKGYINLGELHYRVQKYDEAILCYQKALNLAQSMED  284 (1313)
Q Consensus       249 ~~~~~~la~~~~~~g~~~~A~~~~~kal~l~~~~~~  284 (1313)
                      +..|+++|.+|...|++.+|+.+|.+|+.+.+....
T Consensus       186 ~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~  221 (497)
T d1ya0a1         186 GQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPA  221 (497)
T ss_dssp             SHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH
T ss_conf             599999999999869999999999999817999789

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.1e-15  Score=126.71  Aligned_cols=186  Identities=12%  Similarity=0.047  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999999999862798872268878999999702949999999999999989705989999999999999999720
Q 000742           45 VEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFL  124 (1313)
Q Consensus        45 ~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~  124 (1313)
                      -+|+++|++|+++.+..      +.++..+|.+|...+++++|   | ++++...++....      +...+..+.    
T Consensus         3 ~eA~q~~~qA~~l~p~~------a~a~~~la~~~~~~~~l~ea---y-e~~i~~dp~~a~~------~~~e~~Lw~----   62 (497)
T d1ya0a1           3 LQSAQYLRQAEVLKADM------TDSKLGPAEVWTSRQALQDL---Y-QKMLVTDLEYALD------KKVEQDLWN----   62 (497)
T ss_dssp             HHHHHHHHHHHHHHGGG------TCSSSCSSSSHHHHHHHHHH---H-HHHHHHCHHHHHH------HTHHHHHHH----
T ss_pred             HHHHHHHHHHHHCCCCC------HHHHHHHHHHHHHHCHHHHH---H-HHHHHCCHHHHHH------HHHHHHHHH----
T ss_conf             89999999998719997------99995199999997629999---9-9998749301999------857999999----


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             59740453999999999999999983159988731104999999999999999709999999999997857522014888
Q 000742          125 RSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSED  204 (1313)
Q Consensus       125 ~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~  204 (1313)
                            ..|..+++.+++..+.    .... .       .........+.++...+.|+.|+..+.+++.+         
T Consensus        63 ------~~y~~~ie~~r~~~k~----~~~~-~-------~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l---------  115 (497)
T d1ya0a1          63 ------HAFKNQITTLQGQAKN----RANP-N-------RSEVQANLSLFLEAASGFYTQLLQELCTVFNV---------  115 (497)
T ss_dssp             ------HHTHHHHHHHHHHHSC----SSCT-T-------TTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------
T ss_pred             ------HHHHHHHHHHHHHCCC----CCCC-C-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------
T ss_conf             ------9999999999985616----4584-3-------79999999999999999999999999998789---------


Q ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             15899999999999998278999999999999999981011427999999999999810989999999999999997069
Q 000742          205 DDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMED  284 (1313)
Q Consensus       205 ~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~l~~~~~~  284 (1313)
                      .+.....+.++|.++...|++++|+..+++++...+        ..++.++|.++..++++++|+.+|++|+++.|..+.
T Consensus       116 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~  187 (497)
T d1ya0a1         116 DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--------QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQ  187 (497)
T ss_dssp             ---------------------------CCHHHHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCH--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
T ss_conf             911399999857998758999999999998827889--------999999999999802478999999999987899659


Q ss_pred             H
Q ss_conf             2
Q 000742          285 E  285 (1313)
Q Consensus       285 ~  285 (1313)
                      .
T Consensus       188 ~  188 (497)
T d1ya0a1         188 P  188 (497)
T ss_dssp             H
T ss_pred             H
T ss_conf             9

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.55  E-value=8.8e-16  Score=127.42  Aligned_cols=86  Identities=20%  Similarity=0.213  Sum_probs=33.6

Q ss_pred             CCCEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             41099825798993689999999730798338976699999388999999841999962499810377998889999998
Q 000742         1059 ESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKA 1138 (1313)
Q Consensus      1059 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~ 1138 (1313)
                      +|+.|++++|.++...    +..+..++.++.|++++|.+.+.....+...     ..|++|+|++|.|+     .++.+
T Consensus       172 ~L~~L~l~~n~~~~~~----~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l-----~~L~~L~L~~N~L~-----~lp~~  237 (305)
T d1xkua_         172 SLTELHLDGNKITKVD----AASLKGLNNLAKLGLSFNSISAVDNGSLANT-----PHLRELHLNNNKLV-----KVPGG  237 (305)
T ss_dssp             TCSEEECTTSCCCEEC----TGGGTTCTTCCEEECCSSCCCEECTTTGGGS-----TTCCEEECCSSCCS-----SCCTT
T ss_pred             CCCEEECCCCCCCCCC----HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCEEEECCCCCCC-----CCCCC
T ss_conf             6678989788677888----2676413413301544553322234543344-----33224302554002-----46311


Q ss_pred             HHCCCCCCEEECCCCCCCHH
Q ss_conf             62299846997348999803
Q 000742         1139 LSENDTLEELNLADNASKEL 1158 (1313)
Q Consensus      1139 l~~~~~L~~L~Ls~N~i~~~ 1158 (1313)
                      +..+++|+.|+|++|.|+..
T Consensus       238 l~~l~~L~~L~Ls~N~i~~i  257 (305)
T d1xkua_         238 LADHKYIQVVYLHNNNISAI  257 (305)
T ss_dssp             TTTCSSCCEEECCSSCCCCC
T ss_pred             CCCCCCCCEEECCCCCCCCC
T ss_conf             03346789898989865763

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.55  E-value=9.4e-19  Score=149.49  Aligned_cols=206  Identities=19%  Similarity=0.219  Sum_probs=103.5

Q ss_pred             CCCCCEEEECC-CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHH
Q ss_conf             99858898039-99993699999998731999768994259999888999999981499966888078889890259999
Q 000742          916 FTRLGVLNLSG-NRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNL  994 (1313)
Q Consensus       916 ~~~L~~L~Ls~-n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~~~~~~~~~~l  994 (1313)
                      +++|++|+|++ |.+.+.    ++..+.++++|++|+|++|.+.+    .....+.....|+.++++.|. +...    +
T Consensus        75 L~~L~~L~Ls~~N~l~g~----iP~~i~~L~~L~~L~Ls~N~l~~----~~~~~~~~~~~L~~l~l~~N~-~~~~----~  141 (313)
T d1ogqa_          75 LPYLNFLYIGGINNLVGP----IPPAIAKLTQLHYLYITHTNVSG----AIPDFLSQIKTLVTLDFSYNA-LSGT----L  141 (313)
T ss_dssp             CTTCSEEEEEEETTEESC----CCGGGGGCTTCSEEEEEEECCEE----ECCGGGGGCTTCCEEECCSSE-EESC----C
T ss_pred             CCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCHHHHCCCCCCC----CCCCCCCCHHHHCCCCCCCCC-CCCC----C
T ss_conf             753352020265433300----24311454200110203564344----332222201110011112245-5556----8


Q ss_pred             HHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCC-CCEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCHH
Q ss_conf             986104886664654798899579999999851598-6588745777997119999999841899410998257989936
Q 000742          995 LVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSC-LTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLEST 1073 (1313)
Q Consensus       995 ~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~-L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 1073 (1313)
                      +..+..++.++.+++++|.+....+..+..   ... ++.++++.|.+.......    + .. ..+..++++.+.....
T Consensus       142 p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~---l~~l~~~l~~~~n~l~~~~~~~----~-~~-l~~~~l~l~~~~~~~~  212 (313)
T d1ogqa_         142 PPSISSLPNLVGITFDGNRISGAIPDSYGS---FSKLFTSMTISRNRLTGKIPPT----F-AN-LNLAFVDLSRNMLEGD  212 (313)
T ss_dssp             CGGGGGCTTCCEEECCSSCCEEECCGGGGC---CCTTCCEEECCSSEEEEECCGG----G-GG-CCCSEEECCSSEEEEC
T ss_pred             CHHHCCCCCCCEEECCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCC----C-CC-CCCCCCCCCCCCCCCC
T ss_conf             512206740000002355335620312144---3112323102246435332433----2-22-2222333333433222


Q ss_pred             HHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEECCCC
Q ss_conf             89999999730798338976699999388999999841999962499810377998889999998622998469973489
Q 000742         1074 CIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADN 1153 (1313)
Q Consensus      1074 ~~~~l~~~l~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N 1153 (1313)
                          ++..+...++++.+++++|.+..... .+    .. ...|+.|+|++|++++.    +|..+..+++|++|+|++|
T Consensus       213 ----~~~~~~~~~~l~~l~~~~~~l~~~~~-~~----~~-~~~L~~L~Ls~N~l~g~----iP~~l~~L~~L~~L~Ls~N  278 (313)
T d1ogqa_         213 ----ASVLFGSDKNTQKIHLAKNSLAFDLG-KV----GL-SKNLNGLDLRNNRIYGT----LPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             ----CGGGCCTTSCCSEEECCSSEECCBGG-GC----CC-CTTCCEEECCSSCCEEC----CCGGGGGCTTCCEEECCSS
T ss_pred             ----CCCCCCCCCCCCCCCCCCCCCCCCCC-CC----CC-CCCCCCCCCCCCEECCC----CCHHHHCCCCCCEEECCCC
T ss_conf             ----22222222221112222222222222-22----24-55444444765706660----8768847999998979588


Q ss_pred             CCCH
Q ss_conf             9980
Q 000742         1154 ASKE 1157 (1313)
Q Consensus      1154 ~i~~ 1157 (1313)
                      .+++
T Consensus       279 ~l~g  282 (313)
T d1ogqa_         279 NLCG  282 (313)
T ss_dssp             EEEE
T ss_pred             CCCC
T ss_conf             3516

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.55  E-value=1.6e-18  Score=147.81  Aligned_cols=209  Identities=18%  Similarity=0.174  Sum_probs=107.2

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEC-CCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHH
Q ss_conf             98588980399999369999999873199976899425-99998889999999814999668880788898902599999
Q 000742          917 TRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIEN-CSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLL  995 (1313)
Q Consensus       917 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~-~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~~~~~~~~~~l~  995 (1313)
                      .+++.|+|++|.+....  .++..+..++.|++|+|++ |.+++    .++..+..+++|++|+|++|.+ .+.    .+
T Consensus        50 ~~v~~L~L~~~~l~g~~--~lp~~l~~L~~L~~L~Ls~~N~l~g----~iP~~i~~L~~L~~L~Ls~N~l-~~~----~~  118 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPY--PIPSSLANLPYLNFLYIGGINNLVG----PIPPAIAKLTQLHYLYITHTNV-SGA----IP  118 (313)
T ss_dssp             CCEEEEEEECCCCSSCE--ECCGGGGGCTTCSEEEEEEETTEES----CCCGGGGGCTTCSEEEEEEECC-EEE----CC
T ss_pred             EEEEEEECCCCCCCCCC--CCCHHHHCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCHHHHCCCCC-CCC----CC
T ss_conf             79889989899888888--7984784675335202026543330----0243114542001102035643-443----32


Q ss_pred             HHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCHHHH
Q ss_conf             86104886664654798899579999999851598658874577799711999999984189941099825798993689
Q 000742          996 VKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCI 1075 (1313)
Q Consensus       996 ~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 1075 (1313)
                      ..+..+..|+.++++.|.+....+..+   ...+.++.+++++|.+....    ...+......++.++++.|.+++...
T Consensus       119 ~~~~~~~~L~~l~l~~N~~~~~~p~~l---~~l~~L~~l~l~~n~l~~~i----p~~~~~l~~l~~~l~~~~n~l~~~~~  191 (313)
T d1ogqa_         119 DFLSQIKTLVTLDFSYNALSGTLPPSI---SSLPNLVGITFDGNRISGAI----PDSYGSFSKLFTSMTISRNRLTGKIP  191 (313)
T ss_dssp             GGGGGCTTCCEEECCSSEEESCCCGGG---GGCTTCCEEECCSSCCEEEC----CGGGGCCCTTCCEEECCSSEEEEECC
T ss_pred             CCCCCHHHHCCCCCCCCCCCCCCCHHH---CCCCCCCEEECCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             222201110011112245555685122---06740000002355335620----31214431123231022464353324


Q ss_pred             HHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf             99999973079833897669999938899999984199996249981037799888999999862299846997348999
Q 000742         1076 HKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNAS 1155 (1313)
Q Consensus      1076 ~~l~~~l~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i 1155 (1313)
                          ..+.. ..+..++++.+.+....+..+..     ...++.|++++|.+...    + ..+..++.|+.|+|++|.+
T Consensus       192 ----~~~~~-l~~~~l~l~~~~~~~~~~~~~~~-----~~~l~~l~~~~~~l~~~----~-~~~~~~~~L~~L~Ls~N~l  256 (313)
T d1ogqa_         192 ----PTFAN-LNLAFVDLSRNMLEGDASVLFGS-----DKNTQKIHLAKNSLAFD----L-GKVGLSKNLNGLDLRNNRI  256 (313)
T ss_dssp             ----GGGGG-CCCSEEECCSSEEEECCGGGCCT-----TSCCSEEECCSSEECCB----G-GGCCCCTTCCEEECCSSCC
T ss_pred             ----CCCCC-CCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCC----C-CCCCCCCCCCCCCCCCCEE
T ss_conf             ----33222-22223333334332222222222-----22211122222222222----2-2222455444444765706


Q ss_pred             CHH
Q ss_conf             803
Q 000742         1156 KEL 1158 (1313)
Q Consensus      1156 ~~~ 1158 (1313)
                      ++.
T Consensus       257 ~g~  259 (313)
T d1ogqa_         257 YGT  259 (313)
T ss_dssp             EEC
T ss_pred             CCC
T ss_conf             660

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.55  E-value=1.9e-15  Score=124.85  Aligned_cols=256  Identities=20%  Similarity=0.179  Sum_probs=122.3

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHH
Q ss_conf             98588980399999369999999873199976899425999988899999998149996688807888989025999998
Q 000742          917 TRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLV  996 (1313)
Q Consensus       917 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~~~~~~~~~~l~~  996 (1313)
                      +++++|+|++|.|+..    -...+..++.|+.|++++|.+..    ..+.+|..++.|++|++++|.+ ..-     +.
T Consensus        31 ~~l~~L~Ls~N~i~~l----~~~~f~~l~~L~~L~l~~n~~~~----i~~~~f~~l~~L~~L~l~~n~l-~~l-----~~   96 (305)
T d1xkua_          31 PDTALLDLQNNKITEI----KDGDFKNLKNLHTLILINNKISK----ISPGAFAPLVKLERLYLSKNQL-KEL-----PE   96 (305)
T ss_dssp             TTCCEEECCSSCCCCB----CTTTTTTCTTCCEEECCSSCCCC----BCTTTTTTCTTCCEEECCSSCC-SBC-----CS
T ss_pred             CCCCEEECCCCCCCCC----CHHHHHCCCCCCCCCCCCCCCCC----CCHHHHHCCCCCCEECCCCCCC-CCC-----CC
T ss_conf             9979897849918986----96576046565231123443445----2356652798557831568756-767-----64


Q ss_pred             HHCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHH
Q ss_conf             61048866646547988995799999998515986588745777997119999999841899410998257989936899
Q 000742          997 KLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIH 1076 (1313)
Q Consensus       997 ~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 1076 (1313)
                        .....+..|.+..+.+.......+   .....+..+.+..+........   ...+...+.|+.++++.|.++...  
T Consensus        97 --~~~~~l~~L~~~~n~l~~l~~~~~---~~~~~~~~l~~~~n~~~~~~~~---~~~~~~l~~L~~l~l~~n~l~~l~--  166 (305)
T d1xkua_          97 --KMPKTLQELRVHENEITKVRKSVF---NGLNQMIVVELGTNPLKSSGIE---NGAFQGMKKLSYIRIADTNITTIP--  166 (305)
T ss_dssp             --SCCTTCCEEECCSSCCCBBCHHHH---TTCTTCCEEECCSSCCCGGGBC---TTGGGGCTTCCEEECCSSCCCSCC--
T ss_pred             --CHHHHHHHHHCCCCCHHHHHHHHH---HCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCC--
T ss_conf             --001113232102461023444454---0133110000123333346777---642234565671203467745167--


Q ss_pred             HHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCC
Q ss_conf             99999730798338976699999388999999841999962499810377998889999998622998469973489998
Q 000742         1077 KFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASK 1156 (1313)
Q Consensus      1077 ~l~~~l~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~ 1156 (1313)
                           ....++|+.|++++|.+.......+..     ...++.|++++|.++..    .+..+..+++|++|+|++|.|+
T Consensus       167 -----~~~~~~L~~L~l~~n~~~~~~~~~~~~-----~~~l~~L~~s~n~l~~~----~~~~~~~l~~L~~L~L~~N~L~  232 (305)
T d1xkua_         167 -----QGLPPSLTELHLDGNKITKVDAASLKG-----LNNLAKLGLSFNSISAV----DNGSLANTPHLRELHLNNNKLV  232 (305)
T ss_dssp             -----SSCCTTCSEEECTTSCCCEECTGGGTT-----CTTCCEEECCSSCCCEE----CTTTGGGSTTCCEEECCSSCCS
T ss_pred             -----CCCCCCCCEEECCCCCCCCCCHHHHHC-----CCCCCCCCCCCCCCCCC----CCCCCCCCCCCEEEECCCCCCC
T ss_conf             -----101776678989788677888267641-----34133015445533222----3454334433224302554002


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             03354210012335776543345444545331111011124777842101467851012100136898765435558863
Q 000742         1157 ELTLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFDNSCTSSCQKNSSF 1236 (1313)
Q Consensus      1157 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~L~~L~L~ 1236 (1313)
                      ..                      |             ..+.++++|++|++++|+|+.+... .+..            
T Consensus       233 ~l----------------------p-------------~~l~~l~~L~~L~Ls~N~i~~i~~~-~f~~------------  264 (305)
T d1xkua_         233 KV----------------------P-------------GGLADHKYIQVVYLHNNNISAIGSN-DFCP------------  264 (305)
T ss_dssp             SC----------------------C-------------TTTTTCSSCCEEECCSSCCCCCCTT-SSSC------------
T ss_pred             CC----------------------C-------------CCCCCCCCCCEEECCCCCCCCCCHH-HCCC------------
T ss_conf             46----------------------3-------------1103346789898989865763810-0267------------


Q ss_pred             CHHHHHHHHHHHHCCCCCCEECCCCCCCCH
Q ss_conf             000489999997614567630188888888
Q 000742         1237 ECQFVQELSSAIGMAKPLQLLDLSNNGFST 1266 (1313)
Q Consensus      1237 ~n~~~~~l~~~l~~~~~L~~L~Ls~N~~~~ 1266 (1313)
                              +..+....+|+.|+|++|++..
T Consensus       265 --------~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         265 --------PGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             --------SSCCTTSCCCSEEECCSSSSCG
T ss_pred             --------CCHHCCCCCCCEEECCCCCCCC
T ss_conf             --------2100215888978898995766

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=4.1e-15  Score=122.44  Aligned_cols=207  Identities=20%  Similarity=0.156  Sum_probs=88.7

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHH
Q ss_conf             98588980399999369999999873199976899425999988899999998149996688807888989025999998
Q 000742          917 TRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLV  996 (1313)
Q Consensus       917 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~~~~~~~~~~l~~  996 (1313)
                      +++++|+|++|.|+..    -+..+..++.|+.|++++|.+...    ....+.....+..+.+..+..+..-    -+.
T Consensus        32 ~~~~~L~Ls~N~i~~i----~~~~f~~l~~L~~L~ls~n~l~~i----~~~~~~~~~~~~~l~~~~~~~~~~l----~~~   99 (284)
T d1ozna_          32 AASQRIFLHGNRISHV----PAASFRACRNLTILWLHSNVLARI----DAAAFTGLALLEQLDLSDNAQLRSV----DPA   99 (284)
T ss_dssp             TTCSEEECTTSCCCEE----CTTTTTTCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSCTTCCCC----CTT
T ss_pred             CCCCEEECCCCCCCCC----CHHHHHCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCC----CCH
T ss_conf             9988897748817987----977864142130000134454332----1112122222222222210223544----620


Q ss_pred             HHCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHH
Q ss_conf             61048866646547988995799999998515986588745777997119999999841899410998257989936899
Q 000742          997 KLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIH 1076 (1313)
Q Consensus       997 ~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 1076 (1313)
                      .+..+++|+.|+++.|.+.......   ......|+.+++++|.++....     ..+...+.|+.|++++|.++..   
T Consensus       100 ~~~~l~~L~~L~l~~n~~~~~~~~~---~~~~~~L~~l~l~~N~l~~i~~-----~~f~~~~~L~~L~l~~N~l~~l---  168 (284)
T d1ozna_         100 TFHGLGRLHTLHLDRCGLQELGPGL---FRGLAALQYLYLQDNALQALPD-----DTFRDLGNLTHLFLHGNRISSV---  168 (284)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTT---TTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCCEE---
T ss_pred             HHCCCCCCCEEECCCCCCCCCCCCC---CCHHCCCCHHHHCCCCCCCCCH-----HHHCCCCCHHHCCCCCCCCCCC---
T ss_conf             1010102778756885443201353---3200012110200143144580-----5740434050223141765662---


Q ss_pred             HHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCC
Q ss_conf             99999730798338976699999388999999841999962499810377998889999998622998469973489998
Q 000742         1077 KFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASK 1156 (1313)
Q Consensus      1077 ~l~~~l~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~ 1156 (1313)
                       .+..+..+++|+.+++++|.+++..+..+..+     .+|+.|++++|.+...    .+.++..+++|+.|+|++|.+.
T Consensus       169 -~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l-----~~L~~L~l~~N~i~~~----~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         169 -PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL-----GRLMTLYLFANNLSAL----PTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             -CTTTTTTCTTCCEEECCSSCCCEECTTTTTTC-----TTCCEEECCSSCCSCC----CHHHHTTCTTCCEEECCSSCEE
T ss_pred             -CHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHH-----HHCCCCCCCCCCCCCC----CCCCCCCCCCCCEEEECCCCCC
T ss_conf             -56665465634131421143466281676653-----2000233333522100----0002355465688981199887

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.42  E-value=1.3e-10  Score=88.86  Aligned_cols=61  Identities=20%  Similarity=0.420  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHH----HHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Q ss_conf             999999999999----4199999999999999999917904589999999999997----49999999999999999
Q 000742          381 DSFLVIGESYQK----LRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDS----NGDWAGALDAFQEGYRI  449 (1313)
Q Consensus       381 ~~~~~lg~~y~~----~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~kAl~l  449 (1313)
                      .+...+|.+|..    .+++++|+.+|+++.+.        +.+.+++++|.+|..    .+++++|+.+|++|...
T Consensus       179 ~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--------g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~  247 (265)
T d1ouva_         179 PGCFNAGNMYHHGEGATKNFKEALARYSKACEL--------ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  247 (265)
T ss_dssp             HHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             CCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHC
T ss_conf             332211312126765431034445467665303--------689999999999983999761899999999999987

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.37  E-value=7.7e-10  Score=83.22  Aligned_cols=193  Identities=20%  Similarity=0.353  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999999870799999999999999998627988722688789999997----029499999999999999897059
Q 000742           29 RWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLR----LEHFKDALIYQVKKHLELAKDASD  104 (1313)
Q Consensus        29 ~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~kal~l~~~~~~  104 (1313)
                      .+++.+|..++..+++.+|+++|+++.+..        ...+++.+|.+|..    ..++..|..++ +++...    .+
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g--------~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~-~~a~~~----~~   69 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK--------ENSGCFNLGVLYYQGQGVEKNLKKAASFY-AKACDL----NY   69 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTSSSCCCHHHHHHHH-HHHHHT----TC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHCCCCCCHHHHHHHHHH-CCCCCC----CC
T ss_conf             999999999998779999999999999789--------99999999999980999605699998750-122211----11


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH----CC
Q ss_conf             89999999999999999720597404539999999999999999831599887311049999999999999997----09
Q 000742          105 LVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQME----LD  180 (1313)
Q Consensus       105 ~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~----~g  180 (1313)
                      .    .+...+|..+...    .....+.+.|...++++...                 ....+...+|..+..    ..
T Consensus        70 ~----~a~~~l~~~~~~~----~~~~~~~~~a~~~~~~a~~~-----------------g~~~a~~~l~~~~~~~~~~~~  124 (265)
T d1ouva_          70 S----NGCHLLGNLYYSG----QGVSQNTNKALQYYSKACDL-----------------KYAEGCASLGGIYHDGKVVTR  124 (265)
T ss_dssp             H----HHHHHHHHHHHHT----SSSCCCHHHHHHHHHHHHHT-----------------TCHHHHHHHHHHHHHCSSSCC
T ss_pred             C----CHHHCCCCCCCCC----CCCCHHHHHHHHHHHHHHHH-----------------HHHHHHHHHCCCCCCCCCCCC
T ss_conf             1----1231350122432----11212367798887655432-----------------146688763433237873310


Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf             99999999999785752201488815899999999999998----27899999999999999998101142799999999
Q 000742          181 NLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYME----LRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLG  256 (1313)
Q Consensus       181 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~Lg~~y~~----~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la  256 (1313)
                      ....|...+.+.....           ....+.++|..|..    ..+...+..+++.+.+.        ....+.+++|
T Consensus       125 ~~~~a~~~~~~~~~~~-----------~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~--------g~~~A~~~lg  185 (265)
T d1ouva_         125 DFKKAVEYFTKACDLN-----------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--------KDSPGCFNAG  185 (265)
T ss_dssp             CHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCC-----------CCCHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCC--------CCCCCCCCHH
T ss_conf             1577888755520011-----------10104455556406887433422000122113232--------2223322113


Q ss_pred             HHHHH----HCCHHHHHHHHHHHHHH
Q ss_conf             99998----10989999999999999
Q 000742          257 ELHYR----VQKYDEAILCYQKALNL  278 (1313)
Q Consensus       257 ~~~~~----~g~~~~A~~~~~kal~l  278 (1313)
                      .+|..    ..++++|+.+|+++.+.
T Consensus       186 ~~y~~g~~~~~d~~~A~~~~~~aa~~  211 (265)
T d1ouva_         186 NMYHHGEGATKNFKEALARYSKACEL  211 (265)
T ss_dssp             HHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred             HHCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf             12126765431034445467665303

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.37  E-value=2e-11  Score=95.03  Aligned_cols=23  Identities=4%  Similarity=0.176  Sum_probs=8.3

Q ss_pred             CCCCEEEECCC-CCCHHHHHHHHH
Q ss_conf             99588980279-999789999999
Q 000742          858 KTVALLDLSHN-LLGNGTMEKLQQ  880 (1313)
Q Consensus       858 ~~L~~L~Ls~n-~l~~~~~~~L~~  880 (1313)
                      ++|++|+|+++ .+++.++..|..
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~   38 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIE   38 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCCHHHHHHHHH
T ss_conf             998197827999989899999999

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.35  E-value=2.7e-11  Score=94.08  Aligned_cols=123  Identities=14%  Similarity=0.156  Sum_probs=54.9

Q ss_pred             CCCCEEECCCC-CCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHH
Q ss_conf             98658874577-79971199999998418994109982579899368999999973079833897669999938899999
Q 000742         1029 SCLTHLMLGCT-NLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALA 1107 (1313)
Q Consensus      1029 ~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~LdLs~N~i~~~~~~~l~ 1107 (1313)
                      ++|++|+|+++ .+++.++..++..+..+ +.|++|++++|.+++.++..++..+..+++|++|+|++|.|++.|+..++
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n-~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNS-KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTC-SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCEEEECCCCCCCHHHHHHHHHHHHHC-CCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEHHHCCHHHHHHHH
T ss_conf             99819782799998989999999997637-76454012015621567988753100023433003301021459999999


Q ss_pred             HHHCCCCCCEEEEEEECC---CCCHHHHHHHHHHHHCCCCCCEEECCCC
Q ss_conf             984199996249981037---7998889999998622998469973489
Q 000742         1108 SLLMNPQCCLKVLVLSKC---QLGLAGVLQLIKALSENDTLEELNLADN 1153 (1313)
Q Consensus      1108 ~~l~~~~~~L~~L~Ls~n---~i~~~g~~~l~~~l~~~~~L~~L~Ls~N 1153 (1313)
                      .++..+. +|++|+|++|   .+++.+...++.++..+++|+.|+++.+
T Consensus        94 ~aL~~n~-sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          94 RSTLVTQ-SIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHTTTTC-CCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHCC-CCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCC
T ss_conf             9998489-38987788776888657999999999972998538648688

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.2e-14  Score=115.82  Aligned_cols=38  Identities=18%  Similarity=0.183  Sum_probs=17.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCH
Q ss_conf             35558863000489999997614567630188888888
Q 000742         1229 SCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFST 1266 (1313)
Q Consensus      1229 ~L~~L~L~~n~~~~~l~~~l~~~~~L~~L~Ls~N~~~~ 1266 (1313)
                      +|+.|+++.|++....+..++.+++|+.|+|++|++..
T Consensus       202 ~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             TCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC
T ss_conf             00023333352210000023554656889811998878

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.2e-14  Score=118.91  Aligned_cols=57  Identities=25%  Similarity=0.226  Sum_probs=23.7

Q ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEECCCC
Q ss_conf             8588980399999369999999873199976899425999988899999998149996688807888
Q 000742          918 RLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNS  984 (1313)
Q Consensus       918 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  984 (1313)
                      +|++|+|++|.|+..    -+..|..+++|+.|+|++|.|+..     . .+..+++|++|+|++|.
T Consensus        32 ~l~~L~Ls~N~i~~l----~~~~f~~l~~L~~L~L~~N~l~~l-----~-~~~~l~~L~~L~Ls~N~   88 (266)
T d1p9ag_          32 DTTILHLSENLLYTF----SLATLMPYTRLTQLNLDRAELTKL-----Q-VDGTLPVLGTLDLSHNQ   88 (266)
T ss_dssp             TCCEEECTTSCCSEE----EGGGGTTCTTCCEEECTTSCCCEE-----E-CCSCCTTCCEEECCSSC
T ss_pred             CCCEEECCCCCCCCC----CHHHHHCCCCCCCCCCCCCCCCCC-----C-CCCCCCCCCCCCCCCCC
T ss_conf             889898849928985----977863456552213566544443-----1-11112232111112222

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.30  E-value=1.1e-11  Score=97.04  Aligned_cols=137  Identities=12%  Similarity=0.040  Sum_probs=65.9

Q ss_pred             CCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHH
Q ss_conf             07983389766999993889999998419999624998103779988899999986229984699734899980335421
Q 000742         1084 LVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKELTLQQN 1163 (1313)
Q Consensus      1084 ~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~~ 1163 (1313)
                      .++.|+.+++++|......     ..    ...+..+.+..+.+...        ....+.+..+++..+.+....  .+
T Consensus       202 ~l~~L~~l~l~~n~~~~~~-----~~----~~~l~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~l~--~l  262 (353)
T d1jl5a_         202 NLPFLTTIYADNNLLKTLP-----DL----PPSLEALNVRDNYLTDL--------PELPQSLTFLDVSENIFSGLS--EL  262 (353)
T ss_dssp             TCTTCCEEECCSSCCSSCC-----SC----CTTCCEEECCSSCCSCC--------CCCCTTCCEEECCSSCCSEES--CC
T ss_pred             CCCCCCCCCCCCCCCCCCC-----CC----CCCCCCCCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCCCC--CC
T ss_conf             5553331222542223455-----32----33433322233333444--------333443222222223332223--45


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             00123357765433454445453311110111247778421014678510121001368987654355588630004899
Q 000742         1164 LSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFDNSCTSSCQKNSSFECQFVQE 1243 (1313)
Q Consensus      1164 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~ 1243 (1313)
                      ........+..+.+..+                ...+++|+.|++++|.++.++       ....+|+.|+|++|+++. 
T Consensus       263 ~~~~~~~~~~~~~~~~~----------------~~~~~~L~~L~Ls~N~l~~lp-------~~~~~L~~L~L~~N~L~~-  318 (353)
T d1jl5a_         263 PPNLYYLNASSNEIRSL----------------CDLPPSLEELNVSNNKLIELP-------ALPPRLERLIASFNHLAE-  318 (353)
T ss_dssp             CTTCCEEECCSSCCSEE----------------CCCCTTCCEEECCSSCCSCCC-------CCCTTCCEEECCSSCCSC-
T ss_pred             CCHHCCCCCCCCCCCCC----------------CCCCCCCCEEECCCCCCCCCC-------CCCCCCCEEECCCCCCCC-
T ss_conf             30001233335753234----------------566898898979799168356-------654879989899996875-


Q ss_pred             HHHHHHCCCCCCEECCCCCCCCH
Q ss_conf             99997614567630188888888
Q 000742         1244 LSSAIGMAKPLQLLDLSNNGFST 1266 (1313)
Q Consensus      1244 l~~~l~~~~~L~~L~Ls~N~~~~ 1266 (1313)
                      +|.   .+.+|+.|++++|.+..
T Consensus       319 l~~---~~~~L~~L~L~~N~L~~  338 (353)
T d1jl5a_         319 VPE---LPQNLKQLHVEYNPLRE  338 (353)
T ss_dssp             CCC---CCTTCCEEECCSSCCSS
T ss_pred             CCC---CCCCCCEEECCCCCCCC
T ss_conf             453---22888989876991897

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.4e-11  Score=94.46  Aligned_cols=94  Identities=26%  Similarity=0.287  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHH
Q ss_conf             99999999970999999999999785752201488815899999999999998278999999999999999981011427
Q 000742          169 HNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGE  248 (1313)
Q Consensus       169 ~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~  248 (1313)
                      +.+.|..+...|+|++|+..|.++..          +  .+.+++++|.+|..+|++++|+.+|++|+++.+      ..
T Consensus         8 l~~~g~~~~~~~d~~~Al~~~~~i~~----------~--~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp------~~   69 (192)
T d1hh8a_           8 LWNEGVLAADKKDWKGALDAFSAVQD----------P--HSRICFNIGCMYTILKNMTEAEKAFTRSINRDK------HL   69 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSSS----------C--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHCCC----------C--CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH------HH
T ss_conf             99999999987799999999986489----------8--899999999999985891467878999999855------23


Q ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             99999999999981098999999999999999
Q 000742          249 AKGYINLGELHYRVQKYDEAILCYQKALNLAQ  280 (1313)
Q Consensus       249 ~~~~~~la~~~~~~g~~~~A~~~~~kal~l~~  280 (1313)
                      +.+|.++|.+|..+|++++|+..|++|+...+
T Consensus        70 ~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~  101 (192)
T d1hh8a_          70 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR  101 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf             46678899999854249999999999998672

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=7.6e-11  Score=90.72  Aligned_cols=24  Identities=13%  Similarity=0.057  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             999999998109899999999999
Q 000742          253 INLGELHYRVQKYDEAILCYQKAL  276 (1313)
Q Consensus       253 ~~la~~~~~~g~~~~A~~~~~kal  276 (1313)
                      +++|.+|..+|++++|+..+++|+
T Consensus       124 ~n~a~~~~~~~~~~~A~~~l~~A~  147 (192)
T d1hh8a_         124 YNIAFMYAKKEEWKKAEEQLALAT  147 (192)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             999999999789999999999998

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.29  E-value=8.3e-10  Score=83.00  Aligned_cols=121  Identities=13%  Similarity=0.104  Sum_probs=67.2

Q ss_pred             HHHHHHH--HHHHHHCCCHHHHHHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             9999999--99999709999999999997857522014---888158999999999999982789999999999999999
Q 000742          166 IDAHNNI--GMLQMELDNLEEAKKFLIRGLEICNEEEV---SEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK  240 (1313)
Q Consensus       166 ~~~~~~l--a~~y~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~kal~~~~  240 (1313)
                      +.++..+  |..++..|+|++|+..|++|+++.+....   .......+.+|.++|.+|..+|++++|+..+++++.+.+
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
T ss_conf             99999999999999859999999999999986844201020012102799999999999982863001576643553043


Q ss_pred             HHCH-----HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf             8101-----142799999999999981098999999999999999706925
Q 000742          241 KIEH-----CQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDED  286 (1313)
Q Consensus       241 ~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~l~~~~~~~~  286 (1313)
                      +...     .+....+++++|.+|..+|++++|+.+|++|+++.++..+..
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~  137 (156)
T d2hr2a1          87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET  137 (156)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_conf             100245544311278775269999988888888999999998668742307

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.29  E-value=1.1e-10  Score=89.48  Aligned_cols=198  Identities=17%  Similarity=0.129  Sum_probs=113.3

Q ss_pred             CCEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHH
Q ss_conf             77698248998947889899975149995889802799997899999999971146764419980279999788999971
Q 000742          832 EDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICE  911 (1313)
Q Consensus       832 ~~~L~ls~~~l~~~~~~~l~~~L~~~~~L~~L~Ls~n~l~~~~~~~L~~~~~~~~~~~~l~~L~Ls~n~l~~~~~~~l~~  911 (1313)
                      ..+|++++++++...     .   ..++|++|+|++|.|+.-.         .  ...+++.|++++|+++...     .
T Consensus        40 l~~LdLs~~~L~~lp-----~---~~~~L~~L~Ls~N~l~~lp---------~--~~~~L~~L~l~~n~l~~l~-----~   95 (353)
T d1jl5a_          40 AHELELNNLGLSSLP-----E---LPPHLESLVASCNSLTELP---------E--LPQSLKSLLVDNNNLKALS-----D   95 (353)
T ss_dssp             CSEEECTTSCCSCCC-----S---CCTTCSEEECCSSCCSSCC---------C--CCTTCCEEECCSSCCSCCC-----S
T ss_pred             CCEEEECCCCCCCCC-----C---CCCCCCEEECCCCCCCCCC---------C--CHHHHHHHHHHHCCCCHHH-----H
T ss_conf             989993799988788-----9---8789888989999796336---------2--0332033266551432032-----1


Q ss_pred             CCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHH
Q ss_conf             03279985889803999993699999998731999768994259999888999999981499966888078889890259
Q 000742          912 CPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAI  991 (1313)
Q Consensus       912 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~~~~~~~~  991 (1313)
                      .   .+.|++|++++|.+..     ++. +..++.|+.|++++|.+...     +   .....+..+.+..+.....   
T Consensus        96 l---p~~L~~L~L~~n~l~~-----lp~-~~~l~~L~~L~l~~~~~~~~-----~---~~~~~l~~l~~~~~~~~~~---  155 (353)
T d1jl5a_          96 L---PPLLEYLGVSNNQLEK-----LPE-LQNSSFLKIIDVDNNSLKKL-----P---DLPPSLEFIAAGNNQLEEL---  155 (353)
T ss_dssp             C---CTTCCEEECCSSCCSS-----CCC-CTTCTTCCEEECCSSCCSCC-----C---CCCTTCCEEECCSSCCSSC---
T ss_pred             H---CCCCCCCCCCCCCCCC-----CCC-HHHHCCCEEECCCCCCCCCC-----C---CCCCCCCCHHHCCCCCCCC---
T ss_conf             0---2211111334554322-----210-01101312311356510013-----2---2333321000012222233---


Q ss_pred             HHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCC
Q ss_conf             99998610488666465479889957999999985159865887457779971199999998418994109982579899
Q 000742          992 TNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLE 1071 (1313)
Q Consensus       992 ~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 1071 (1313)
                          ..+..++.++.+.+..+.......       .......+.+.++.+....      . ....+.|+.++++.|...
T Consensus       156 ----~~l~~l~~l~~L~l~~n~~~~~~~-------~~~~~~~l~~~~~~~~~~~------~-~~~l~~L~~l~l~~n~~~  217 (353)
T d1jl5a_         156 ----PELQNLPFLTAIYADNNSLKKLPD-------LPLSLESIVAGNNILEELP------E-LQNLPFLTTIYADNNLLK  217 (353)
T ss_dssp             ----CCCTTCTTCCEEECCSSCCSSCCC-------CCTTCCEEECCSSCCSSCC------C-CTTCTTCCEEECCSSCCS
T ss_pred             ----CCCCCCCCCEECCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCCC------C-CCCCCCCCCCCCCCCCCC
T ss_conf             ----320001222001112334432222-------1222222334443222212------2-345553331222542223


Q ss_pred             HHHHHHHHHHHHCCCCCCEEECCCCCCC
Q ss_conf             3689999999730798338976699999
Q 000742         1072 STCIHKFTASVSLVHGILELNLGGNPIM 1099 (1313)
Q Consensus      1072 ~~~~~~l~~~l~~~~~L~~LdLs~N~i~ 1099 (1313)
                      ..        .....++..+.+..+.+.
T Consensus       218 ~~--------~~~~~~l~~~~~~~~~~~  237 (353)
T d1jl5a_         218 TL--------PDLPPSLEALNVRDNYLT  237 (353)
T ss_dssp             SC--------CSCCTTCCEEECCSSCCS
T ss_pred             CC--------CCCCCCCCCCCCCCCCCC
T ss_conf             45--------532334333222333334

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=3.9e-13  Score=107.75  Aligned_cols=18  Identities=17%  Similarity=-0.031  Sum_probs=9.0

Q ss_pred             HCCCCCCEECCCCCCCCH
Q ss_conf             614567630188888888
Q 000742         1249 GMAKPLQLLDLSNNGFST 1266 (1313)
Q Consensus      1249 ~~~~~L~~L~Ls~N~~~~ 1266 (1313)
                      ..+++|+.|+|++|++..
T Consensus       192 ~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         192 FGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             TTTCCCSEEECCSCCBCC
T ss_pred             CCCCCCCEEEECCCCCCC
T ss_conf             778889999836999878

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.27  E-value=1.1e-10  Score=89.57  Aligned_cols=125  Identities=15%  Similarity=0.165  Sum_probs=49.4

Q ss_pred             CCCCCCEEEECC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHH
Q ss_conf             499958898027-9999789999999997114676441998027999978899997103279985889803999993699
Q 000742          856 THKTVALLDLSH-NLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACG  934 (1313)
Q Consensus       856 ~~~~L~~L~Ls~-n~l~~~~~~~L~~~~~~~~~~~~l~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  934 (1313)
                      .++.|++|+|++ +.+++.++..|...+..   ...++.|+|++|.+++.+...++..+..++.++.+++++|.+++.|+
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~---n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~   91 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKT---NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI   91 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTT---CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             CCCCCCEEECCCCCCCCHHHHHHHHHHHHC---CCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHH
T ss_conf             599986887689999898999999988841---98257430158961177899999877521221012102543220147


Q ss_pred             HHHHHHHHCCCCCCEEEE--ECCCCCHHHHHHHHHHHHCCCCCCEEEECCC
Q ss_conf             999998731999768994--2599998889999999814999668880788
Q 000742          935 SYLSTILKNCKVLYSLNI--ENCSITSRTIQKVADALGAESTLAQLCIGYN  983 (1313)
Q Consensus       935 ~~l~~~l~~~~~L~~L~L--~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  983 (1313)
                      ..+...+..+++|+.++|  +.|.+++.++..++.++..+++|++|+++.+
T Consensus        92 ~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          92 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCC
T ss_conf             889999984865247732167786767999999999984998478858189

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=9.2e-11  Score=90.10  Aligned_cols=106  Identities=17%  Similarity=0.132  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHH
Q ss_conf             99999999999970999999999999785752201488815899999999999998278999999999999999981011
Q 000742          166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHC  245 (1313)
Q Consensus       166 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~  245 (1313)
                      +..+...|..|+..|+|++|+.+|++|+.+.+         ..+.+|.++|.+|..+|++++|+.+|++|+++.|     
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p---------~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p-----   69 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP---------LVAVYYTNRALCYLKMQQPEQALADCRRALELDG-----   69 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-----
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_conf             99999999999986999999999999998599---------9899998178987410000012478888887188-----


Q ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf             42799999999999981098999999999999999706925
Q 000742          246 QGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDED  286 (1313)
Q Consensus       246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~l~~~~~~~~  286 (1313)
                       ..+.+|+++|.+|..+|++++|+.+|++|+++.|......
T Consensus        70 -~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~~~  109 (201)
T d2c2la1          70 -QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNF  109 (201)
T ss_dssp             -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             -CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             -7389999999999987999999999999987495567989

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.24  E-value=1.8e-10  Score=87.87  Aligned_cols=124  Identities=18%  Similarity=0.137  Sum_probs=62.7

Q ss_pred             CCCCEEECCC-CCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHH
Q ss_conf             9865887457-779971199999998418994109982579899368999999973079833897669999938899999
Q 000742         1029 SCLTHLMLGC-TNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALA 1107 (1313)
Q Consensus      1029 ~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~LdLs~N~i~~~~~~~l~ 1107 (1313)
                      +.|++|+|++ +.+++.++..++.++..+ +.|++|++++|.+++.++..++..+..+++++.|++++|.+++.|...++
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n-~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~   95 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTN-TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV   95 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTC-CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCEEECCCCCCCCHHHHHHHHHHHHCC-CCCCEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHH
T ss_conf             99868876899998989999999888419-82574301589611778999998775212210121025432201478899


Q ss_pred             HHHCCCCCCEEEEEE--ECCCCCHHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf             984199996249981--03779988899999986229984699734899
Q 000742         1108 SLLMNPQCCLKVLVL--SKCQLGLAGVLQLIKALSENDTLEELNLADNA 1154 (1313)
Q Consensus      1108 ~~l~~~~~~L~~L~L--s~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~ 1154 (1313)
                      ..+..+. +|+.++|  ++|.+++.|+..|+.++..+++|+.|+++.+.
T Consensus        96 ~~l~~~~-~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          96 EALQSNT-SLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HGGGGCS-SCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHCC-CCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf             9998486-52477321677867679999999999849984788581898

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.22  E-value=1.2e-11  Score=96.61  Aligned_cols=56  Identities=18%  Similarity=0.234  Sum_probs=23.8

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEECCCC
Q ss_conf             98588980399999369999999873199976899425999988899999998149996688807888
Q 000742          917 TRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNS  984 (1313)
Q Consensus       917 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  984 (1313)
                      .+|+.|++++|.+++     + ..+..+++|+.|++++|.++...      .+..+++|+.+++++|.
T Consensus        41 ~~L~~L~l~~~~i~~-----l-~~l~~l~~L~~L~ls~n~i~~~~------~l~~l~~l~~l~~~~n~   96 (227)
T d1h6ua2          41 DGITTLSAFGTGVTT-----I-EGVQYLNNLIGLELKDNQITDLA------PLKNLTKITELELSGNP   96 (227)
T ss_dssp             HTCCEEECTTSCCCC-----C-TTGGGCTTCCEEECCSSCCCCCG------GGTTCCSCCEEECCSCC
T ss_pred             CCCCEEECCCCCCCC-----C-HHHHCCCCCCEEECCCCEEECCC------CCCCCCCCCCCCCCCCC
T ss_conf             886899777999976-----6-45744888837635785320254------31123343201211122

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=3.3e-09  Score=78.56  Aligned_cols=70  Identities=13%  Similarity=0.015  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999419999999999999999991790458999999999999749999999999999999999
Q 000742          381 DSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVE  452 (1313)
Q Consensus       381 ~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~l~~~  452 (1313)
                      .++...+..+...|++++|...|++++...+  ..+......+..........|+.+.+...++++.++..+
T Consensus       204 ~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~--~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~  273 (308)
T d2onda1         204 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGS--LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE  273 (308)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS--SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf             8999999999986986899999999998278--986899999999999999849999999999999987711

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.20  E-value=9.5e-09  Score=75.11  Aligned_cols=191  Identities=9%  Similarity=0.013  Sum_probs=102.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999785752201488815899999999999998278999999999999999981011427999999999999
Q 000742          181 NLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHY  260 (1313)
Q Consensus       181 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~  260 (1313)
                      ..++|...|++|+....        +.....+...+..+...|++++|...|++++...+     .....++...+.+..
T Consensus        79 ~~~~a~~i~~ral~~~~--------p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~-----~~~~~~w~~~~~~~~  145 (308)
T d2onda1          79 FSDEAANIYERAISTLL--------KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED-----IDPTLVYIQYMKFAR  145 (308)
T ss_dssp             HHHHHHHHHHHHHTTTT--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSS-----SCTHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHH
T ss_conf             45999999999998749--------98799999999999861338999999999998715-----786999999999999


Q ss_pred             HHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             81098999999999999999706925889999994999999998899999999999999999998308906999999999
Q 000742          261 RVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQN  340 (1313)
Q Consensus       261 ~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~  340 (1313)
                      ..++++.|...|+++++..+...                                                         
T Consensus       146 ~~~~~~~ar~i~~~al~~~~~~~---------------------------------------------------------  168 (308)
T d2onda1         146 RAEGIKSGRMIFKKAREDARTRH---------------------------------------------------------  168 (308)
T ss_dssp             HHHCHHHHHHHHHHHHTSTTCCT---------------------------------------------------------
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCH---------------------------------------------------------
T ss_conf             82786889999999998088867---------------------------------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf             99999999999799899999999999999998079124599999999999-99419999999999999999991790458
Q 000742          341 ASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESY-QKLRKFNKAIKWYTKSWEMYKSIGNLEGQ  419 (1313)
Q Consensus       341 ~~l~~L~~~~~~~~~~~~A~~~~~~a~~l~~~~~~~~~~a~~~~~lg~~y-~~~g~~~~A~~~~~kal~l~~~~~~~~~~  419 (1313)
                                                              ..+...|... ...|+.+.|...|+++++..+      ..
T Consensus       169 ----------------------------------------~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p------~~  202 (308)
T d2onda1         169 ----------------------------------------HVYVTAALMEYYCSKDKSVAFKIFELGLKKYG------DI  202 (308)
T ss_dssp             ----------------------------------------HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT------TC
T ss_pred             ----------------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH------HH
T ss_conf             ----------------------------------------99999999998765577899999999998610------03


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf             99999999999974999999999999999999919926799998754899997203999999999999999
Q 000742          420 ALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEARRLQHEIDKL  490 (1313)
Q Consensus       420 ~~~~~~lg~~y~~~g~~~~A~~~~~kAl~l~~~~~~~~~~~~al~~L~~~~~~~~~~~~~a~~~~e~~~~l  490 (1313)
                      ...+...+..+...|++++|...|++|+....  ..+.....++..... +....|+.+.+....+...++
T Consensus       203 ~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~--~~~~~~~~iw~~~~~-fE~~~G~~~~~~~~~~r~~~~  270 (308)
T d2onda1         203 PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS--LPPEKSGEIWARFLA-FESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS--SCGGGCHHHHHHHHH-HHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHH
T ss_conf             88999999999986986899999999998278--986899999999999-999849999999999999987

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.19  E-value=2.9e-09  Score=78.98  Aligned_cols=84  Identities=18%  Similarity=0.125  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99999999999941999999999999999999179-----0458999999999999749999999999999999999199
Q 000742          381 DSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGN-----LEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANL  455 (1313)
Q Consensus       381 ~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~-----~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~l~~~~~~  455 (1313)
                      .+|.++|.+|..+|++++|+.++++++.+.+....     .+....+++++|.+|..+|++++|+.+|++|+++.++...
T Consensus        56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~  135 (156)
T d2hr2a1          56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  135 (156)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999999999828630015766435530431002455443112787752699999888888889999999986687423


Q ss_pred             HHHHHHHHH
Q ss_conf             267999987
Q 000742          456 PSVQLSALE  464 (1313)
Q Consensus       456 ~~~~~~al~  464 (1313)
                      .......+.
T Consensus       136 ~~~~~~~~~  144 (156)
T d2hr2a1         136 ETPGKERMM  144 (156)
T ss_dssp             CCTTHHHHH
T ss_pred             HHHHHHHHH
T ss_conf             079999999

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.9e-09  Score=80.27  Aligned_cols=109  Identities=18%  Similarity=0.192  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             99999999999709999999999997857522014888------158999999999999982789999999999999999
Q 000742          167 DAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSED------DDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK  240 (1313)
Q Consensus       167 ~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~kal~~~~  240 (1313)
                      ..+...|..++..|+|++|+..|++|+.+.+.......      ......++.++|.+|..+|++++|+.++++++.+.|
T Consensus        14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p   93 (170)
T d1p5qa1          14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS   93 (170)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCC
T ss_conf             99999999999969999999999999887510100035777640646799999999998864211011000000010022


Q ss_pred             HHCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf             81011427999999999999810989999999999999997
Q 000742          241 KIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQS  281 (1313)
Q Consensus       241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~l~~~  281 (1313)
                            ..+.+++.+|.+|..+|++++|+.+|++++++.|.
T Consensus        94 ------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~  128 (170)
T d1p5qa1          94 ------NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN  128 (170)
T ss_dssp             ------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred             ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             ------31034677799998722299999999999972989

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1e-09  Score=82.26  Aligned_cols=64  Identities=22%  Similarity=0.199  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             9999999999994199999999999999999917904589999999999997499999999999999999
Q 000742          381 DSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIA  450 (1313)
Q Consensus       381 ~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~l~  450 (1313)
                      .++.++|.+|.++|+|++|+.++++++++.|      ....+++.+|.+|..+|+|++|+.+|++|+++.
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  126 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALELDS------NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY  126 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHCCCCCCHHHHHHHCCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999999998864211011000000010022------310346777999987222999999999999729

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.3e-09  Score=81.59  Aligned_cols=105  Identities=14%  Similarity=0.180  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999999999709999999999997857522014888158999999999999982789999999999999999810
Q 000742          164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIE  243 (1313)
Q Consensus       164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~kal~~~~~~~  243 (1313)
                      ..+..+...|..|+..|+|++|+..|++++++.         |..+.+|.++|.+|..+|++++|+..|++++++.+   
T Consensus         8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~---------p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p---   75 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKDYENAIKFYSQAIELN---------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK---   75 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC---------HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC---
T ss_conf             999999999999999589999999866021100---------01133324567888740542128888999998754---


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             1142799999999999981098999999999999999706
Q 000742          244 HCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSME  283 (1313)
Q Consensus       244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~l~~~~~  283 (1313)
                         ....++..+|.++..+|++++|+.++++++.+.|...
T Consensus        76 ---~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~  112 (159)
T d1a17a_          76 ---KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK  112 (159)
T ss_dssp             ---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             ---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH
T ss_conf             ---4668779999999994999999998999987299979

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.5e-09  Score=81.16  Aligned_cols=65  Identities=11%  Similarity=-0.039  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             99999999999970999999999999785752201488815899999999999998278999999999999999
Q 000742          166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIIC  239 (1313)
Q Consensus       166 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~kal~~~  239 (1313)
                      +.+|.++|.+|..+|++++|+..|++++++.         +....++..+|.+|..+|++++|+..+++++.+.
T Consensus        44 ~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~---------p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~  108 (159)
T d1a17a_          44 AIYYGNRSLAYLRTECYGYALGDATRAIELD---------KKYIKGYYRRAASNMALGKFRAALRDYETVVKVK  108 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf             3332456788874054212888899999875---------4466877999999999499999999899998729

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.17  E-value=5.1e-12  Score=99.42  Aligned_cols=56  Identities=21%  Similarity=0.277  Sum_probs=23.5

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEECCCC
Q ss_conf             98588980399999369999999873199976899425999988899999998149996688807888
Q 000742          917 TRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNS  984 (1313)
Q Consensus       917 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  984 (1313)
                      ++|++|++++|.+.+.      ..+..++.|+.+++++|.++...      .+..+++|+.++++++.
T Consensus        63 ~~L~~L~ls~n~i~~~------~~l~~l~~l~~l~~~~n~~~~i~------~l~~l~~L~~l~l~~~~  118 (227)
T d1h6ua2          63 NNLIGLELKDNQITDL------APLKNLTKITELELSGNPLKNVS------AIAGLQSIKTLDLTSTQ  118 (227)
T ss_dssp             TTCCEEECCSSCCCCC------GGGTTCCSCCEEECCSCCCSCCG------GGTTCTTCCEEECTTSC
T ss_pred             CCCCEEECCCCEEECC------CCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCC
T ss_conf             8883763578532025------43112334320121112222222------22222222122122244

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.12  E-value=2.6e-09  Score=79.26  Aligned_cols=29  Identities=14%  Similarity=0.109  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             99999999999749999999999999999
Q 000742          421 LAKVNMGNVLDSNGDWAGALDAFQEGYRI  449 (1313)
Q Consensus       421 ~~~~~lg~~y~~~g~~~~A~~~~~kAl~l  449 (1313)
                      .+++++|.+|..+|++++|+..|++|+++
T Consensus       112 ~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1         112 KALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             67776999999804799999999999985

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.11  E-value=3.6e-09  Score=78.25  Aligned_cols=109  Identities=16%  Similarity=0.150  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             99999999999709999999999997857522014------888158999999999999982789999999999999999
Q 000742          167 DAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEV------SEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK  240 (1313)
Q Consensus       167 ~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~kal~~~~  240 (1313)
                      ..+...|..++..|+|.+|+..|.+|+.+.+....      .........++.++|.+|..+|++++|+.++++++.+.|
T Consensus        16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p   95 (168)
T d1kt1a1          16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS   95 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
T ss_conf             99999999999959999999999999999987500124555310646799998499998776220110002232220131


Q ss_pred             HHCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf             81011427999999999999810989999999999999997
Q 000742          241 KIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQS  281 (1313)
Q Consensus       241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~l~~~  281 (1313)
                            ....+++.+|.+|..+|++++|+..|++++.+.|.
T Consensus        96 ------~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~  130 (168)
T d1kt1a1          96 ------ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ  130 (168)
T ss_dssp             ------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT
T ss_pred             ------CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf             ------04889998899998827899999999999985989

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.4e-08  Score=73.85  Aligned_cols=104  Identities=23%  Similarity=0.315  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC-H
Q ss_conf             999999999999709999999999997857522014888158999999999999982789999999999999999810-1
Q 000742          166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIE-H  244 (1313)
Q Consensus       166 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~kal~~~~~~~-~  244 (1313)
                      +..+..+|..++..|+|++|+.+|.+++++.+.         ...++.++|.+|..+|+|++|+..+++++++.+... .
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~   74 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT---------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED   74 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf             899999999999859999999999999884964---------58999868899988186077899999999868012788


Q ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf             1427999999999999810989999999999999
Q 000742          245 CQGEAKGYINLGELHYRVQKYDEAILCYQKALNL  278 (1313)
Q Consensus       245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~l  278 (1313)
                      ....+.+|..+|.++..++++++|+.+|++++..
T Consensus        75 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_conf             9889999999999999938899999999999845

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.08  E-value=3.7e-10  Score=85.62  Aligned_cols=98  Identities=15%  Similarity=0.182  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             99999999997205974045399999999999999998315998873110499999999999999970999999999999
Q 000742          112 CTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIR  191 (1313)
Q Consensus       112 ~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~  191 (1313)
                      +...|..|+..        |+|++|+.+|.+|+.+               .|..+.+|.++|.+|...|++++|+.+|++
T Consensus         7 l~~~Gn~~~~~--------g~~~~Ai~~~~kal~~---------------~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~   63 (201)
T d2c2la1           7 LKEQGNRLFVG--------RKYPEAAACYGRAITR---------------NPLVAVYYTNRALCYLKMQQPEQALADCRR   63 (201)
T ss_dssp             HHHHHHHHHHT--------TCHHHHHHHHHHHHHH---------------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHC--------CCHHHHHHHHHHHHHH---------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999986--------9999999999999985---------------999899998178987410000012478888


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             78575220148881589999999999999827899999999999999998
Q 000742          192 GLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKK  241 (1313)
Q Consensus       192 al~~~~~~~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~kal~~~~~  241 (1313)
                      |+.+.         |..+.+|.++|.+|..+|++++|+.+|++++.+.+.
T Consensus        64 al~l~---------p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~  104 (201)
T d2c2la1          64 ALELD---------GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  104 (201)
T ss_dssp             HTTSC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHC---------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf             88718---------873899999999999879999999999999874955

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=4.8e-09  Score=77.33  Aligned_cols=65  Identities=14%  Similarity=0.199  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999982789999999999999999810114279999999999998109899999999999999970
Q 000742          212 HHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSM  282 (1313)
Q Consensus       212 ~~~Lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~l~~~~  282 (1313)
                      +.++|..|+..|+|++|+.+|++++.+.|      ..+.++.++|.+|..+|+|++|+.++++++++.|..
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~   71 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDP------TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN   71 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf             99999999985999999999999988496------458999868899988186077899999999868012

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.08  E-value=5.1e-10  Score=84.58  Aligned_cols=17  Identities=12%  Similarity=0.089  Sum_probs=6.2

Q ss_pred             HCCCCCCEEEEECCCCC
Q ss_conf             31999768994259999
Q 000742          942 KNCKVLYSLNIENCSIT  958 (1313)
Q Consensus       942 ~~~~~L~~L~L~~~~l~  958 (1313)
                      ..+++|++|++++|.|+
T Consensus        65 ~~l~~L~~L~L~~n~i~   81 (210)
T d1h6ta2          65 QYLPNVTKLFLNGNKLT   81 (210)
T ss_dssp             GGCTTCCEEECCSSCCC
T ss_pred             HHCCCCCEEECCCCCCC
T ss_conf             64899898769896025

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.08  E-value=3.2e-09  Score=78.60  Aligned_cols=69  Identities=16%  Similarity=0.217  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf             899999999999998278999999999999999981011427999999999999810989999999999999997
Q 000742          207 GRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQS  281 (1313)
Q Consensus       207 ~~~~~~~~Lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~l~~~  281 (1313)
                      ..+.++.++|.+|..+|++++|+.++++++++.|      ..+.+++.+|.+|..+|++++|+..|++++++.|.
T Consensus        75 ~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p------~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~  143 (169)
T d1ihga1          75 VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP------SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE  143 (169)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf             2399999899999864021013666554431000------22367776999999804799999999999985989

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.07  E-value=3.9e-09  Score=77.97  Aligned_cols=108  Identities=19%  Similarity=0.162  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC-------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             9999999999709999999999997857522014888-------158999999999999982789999999999999999
Q 000742          168 AHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSED-------DDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK  240 (1313)
Q Consensus       168 ~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~kal~~~~  240 (1313)
                      .+...|..++..|+|.+|+..|.+|+.+.+.......       ......++.++|.+|..+|++++|+.++++++++.|
T Consensus        19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p   98 (153)
T d2fbna1          19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK   98 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCC
T ss_conf             99999999999599999999999877607300111057788763107889996199999984653011101000100000


Q ss_pred             HHCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf             81011427999999999999810989999999999999997
Q 000742          241 KIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQS  281 (1313)
Q Consensus       241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~l~~~  281 (1313)
                            ....+|+.+|.+|..+|++++|+.+|++++++.|.
T Consensus        99 ------~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~  133 (153)
T d2fbna1          99 ------NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN  133 (153)
T ss_dssp             ------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             ------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf             ------00124677689999968999999999999982989

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.06  E-value=1.9e-10  Score=87.74  Aligned_cols=14  Identities=43%  Similarity=0.591  Sum_probs=5.0

Q ss_pred             CCCCEEEECCCCCC
Q ss_conf             98588980399999
Q 000742          917 TRLGVLNLSGNRLT  930 (1313)
Q Consensus       917 ~~L~~L~Ls~n~l~  930 (1313)
                      ++|++|+|++|.++
T Consensus        68 ~~L~~L~L~~n~i~   81 (210)
T d1h6ta2          68 PNVTKLFLNGNKLT   81 (210)
T ss_dssp             TTCCEEECCSSCCC
T ss_pred             CCCCEEECCCCCCC
T ss_conf             99898769896025

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.04  E-value=8.5e-09  Score=75.46  Aligned_cols=63  Identities=19%  Similarity=0.304  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             999999999999419999999999999999991790458999999999999749999999999999999
Q 000742          381 DSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRI  449 (1313)
Q Consensus       381 ~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~l  449 (1313)
                      .++.++|.+|..+|++++|+.++++++++.|      ....+++.+|.+|..+|+|++|+..|++++++
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p------~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGLDS------ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC------CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             9998499998776220110002232220131------04889998899998827899999999999985

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.03  E-value=2.1e-09  Score=79.96  Aligned_cols=16  Identities=25%  Similarity=0.279  Sum_probs=6.0

Q ss_pred             CCCCCCEEEEECCCCC
Q ss_conf             1999768994259999
Q 000742          943 NCKVLYSLNIENCSIT  958 (1313)
Q Consensus       943 ~~~~L~~L~L~~~~l~  958 (1313)
                      .+++|++|++++|.++
T Consensus        60 ~l~nL~~L~Ls~N~l~   75 (199)
T d2omxa2          60 YLNNLTQINFSNNQLT   75 (199)
T ss_dssp             GCTTCCEEECCSSCCC
T ss_pred             CCCCCCCCCCCCCCCC
T ss_conf             3788675754565566

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.9e-09  Score=80.32  Aligned_cols=101  Identities=15%  Similarity=0.181  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHH
Q ss_conf             99999999997099999999999978575220148881589999999999999827899999999999999998101142
Q 000742          168 AHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQG  247 (1313)
Q Consensus       168 ~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~  247 (1313)
                      -+...|..++..|+|++|+..|.++++..+         ..+.+|.++|.+|..+|++++|+.++.+++.+.+      .
T Consensus         5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p---------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------~   69 (117)
T d1elwa_           5 ELKEKGNKALSVGNIDDALQCYSEAIKLDP---------HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP------D   69 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------T
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCCC---------CCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCC------C
T ss_conf             999999999996999999999999886199---------6013430001101100001121001346777402------2


Q ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             799999999999981098999999999999999706
Q 000742          248 EAKGYINLGELHYRVQKYDEAILCYQKALNLAQSME  283 (1313)
Q Consensus       248 ~~~~~~~la~~~~~~g~~~~A~~~~~kal~l~~~~~  283 (1313)
                      .+.+|+++|.++..+|++++|+.+|++++++.|...
T Consensus        70 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~  105 (117)
T d1elwa_          70 WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNP  105 (117)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
T ss_conf             026778899999981279999999999998498989

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.99  E-value=6.1e-09  Score=76.56  Aligned_cols=64  Identities=19%  Similarity=0.177  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             9999999999994199999999999999999917904589999999999997499999999999999999
Q 000742          381 DSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIA  450 (1313)
Q Consensus       381 ~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~l~  450 (1313)
                      .++.++|.+|..+|++++|+.++++++++.|      ....+++.+|.+|..+|++++|+.+|++++++.
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p------~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~  131 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK------NNVKALYKLGVANMYFGFLEEAKENLYKAASLN  131 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHCCCCCCC------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf             9996199999984653011101000100000------001246776899999689999999999999829

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.97  E-value=2e-10  Score=87.63  Aligned_cols=12  Identities=42%  Similarity=0.617  Sum_probs=3.9

Q ss_pred             CCCEEEECCCCC
Q ss_conf             858898039999
Q 000742          918 RLGVLNLSGNRL  929 (1313)
Q Consensus       918 ~L~~L~Ls~n~l  929 (1313)
                      +|++|+|++|.+
T Consensus        63 nL~~L~Ls~N~l   74 (199)
T d2omxa2          63 NLTQINFSNNQL   74 (199)
T ss_dssp             TCCEEECCSSCC
T ss_pred             CCCCCCCCCCCC
T ss_conf             867575456556

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=6.1e-09  Score=76.52  Aligned_cols=25  Identities=8%  Similarity=0.158  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             9999999998278999999999999
Q 000742          212 HHNLGNVYMELRMWDKSREHIEQDI  236 (1313)
Q Consensus       212 ~~~Lg~~y~~~g~~~~A~~~~~kal  236 (1313)
                      |+++|.+|..+|++++|+..|++++
T Consensus        74 ~~~~g~~~~~~~~~~~A~~~~~~a~   98 (117)
T d1elwa_          74 YSRKAAALEFLNRFEEAKRTYEEGL   98 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             7889999998127999999999999

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.83  E-value=2.2e-08  Score=72.36  Aligned_cols=94  Identities=15%  Similarity=0.045  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHH
Q ss_conf             99999999997099999999999978575220148881589999999999999827899999999999999998101142
Q 000742          168 AHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQG  247 (1313)
Q Consensus       168 ~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~  247 (1313)
                      ....+|..+...|++++|+..+++++...+         ..+.+|..+|.+|...|++++|+.++++++++.|      .
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---------~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p------~   82 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEP---------EREEAWRSLGLTQAENEKDGLAIIALNHARMLDP------K   82 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHST---------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------T
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---------CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC------C
T ss_conf             999999999987605899998861011211---------1100123354564101258774100000111111------0


Q ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             79999999999998109899999999999
Q 000742          248 EAKGYINLGELHYRVQKYDEAILCYQKAL  276 (1313)
Q Consensus       248 ~~~~~~~la~~~~~~g~~~~A~~~~~kal  276 (1313)
                      ...++..+|.+|..+|++++|++++++.+
T Consensus        83 ~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          83 DIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             00003789999999789999999999981

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=3.9e-08  Score=70.55  Aligned_cols=30  Identities=20%  Similarity=0.296  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             999999999981098999999999999999
Q 000742          251 GYINLGELHYRVQKYDEAILCYQKALNLAQ  280 (1313)
Q Consensus       251 ~~~~la~~~~~~g~~~~A~~~~~kal~l~~  280 (1313)
                      +++++|.+|..+|++++|+.+|++++++.|
T Consensus        74 ~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P  103 (122)
T d1nzna_          74 YVFYLAVGNYRLKEYEKALKYVRGLLQTEP  103 (122)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             999999999997316999999999997690

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.72  E-value=1.2e-07  Score=67.05  Aligned_cols=61  Identities=18%  Similarity=-0.008  Sum_probs=21.7

Q ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99999987079999999999999999862798872268878999999702949999999999999989
Q 000742           33 VIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAK  100 (1313)
Q Consensus        33 ~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~  100 (1313)
                      .+|..++..|++++|+..|++++...+..      +.++..+|.++..+|++++|+.++ ++++++.|
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~~~~~~A~~~~-~~al~~~p   81 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQKEPER------EEAWRSLGLTQAENEKDGLAIIAL-NHARMLDP   81 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCC------CHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCC
T ss_conf             99999998760589999886101121111------001233545641012587741000-00111111

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=2.6e-08  Score=71.89  Aligned_cols=88  Identities=10%  Similarity=0.029  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf             5399999999999999998315998873110499999999999999970---9999999999997857522014888158
Q 000742          131 YSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMEL---DNLEEAKKFLIRGLEICNEEEVSEDDDG  207 (1313)
Q Consensus       131 ~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~  207 (1313)
                      +++++|++.|++++.+               .|..+.+++++|.++...   +++++|+..+++++..       +..+.
T Consensus        13 ~~l~~Ae~~Y~~aL~~---------------~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~-------~~~~~   70 (122)
T d1nzna_          13 EDLLKFEKKFQSEKAA---------------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-------GSKEE   70 (122)
T ss_dssp             HHHHHHHHHHHHHHHH---------------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-------SCHHH
T ss_pred             HHHHHHHHHHHHHHHH---------------CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC-------CCCCH
T ss_conf             9999999999998832---------------9998999999999999851267899999999999860-------69931


Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             999999999999982789999999999999999
Q 000742          208 RSRLHHNLGNVYMELRMWDKSREHIEQDIIICK  240 (1313)
Q Consensus       208 ~~~~~~~Lg~~y~~~g~~~~A~~~~~kal~~~~  240 (1313)
                      ...+++++|.+|..+|++++|+.+|++++++.|
T Consensus        71 ~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P  103 (122)
T d1nzna_          71 QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP  103 (122)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             999999999999997316999999999997690

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=2e-09  Score=80.21  Aligned_cols=16  Identities=6%  Similarity=-0.033  Sum_probs=6.8

Q ss_pred             CCCCCCCCCCCCCCCH
Q ss_conf             7784210146785101
Q 000742         1199 DCNDLEVADSEDDKIR 1214 (1313)
Q Consensus      1199 ~~~~L~~L~L~~n~i~ 1214 (1313)
                      .+++|+.+++++|+++
T Consensus       110 ~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_         110 SLKSLTYLCILRNPVT  125 (162)
T ss_dssp             GCTTCCEEECCSSGGG
T ss_pred             CCCCCCHHHCCCCCCC
T ss_conf             3653206640799634

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.65  E-value=5.6e-08  Score=69.39  Aligned_cols=17  Identities=24%  Similarity=0.382  Sum_probs=7.6

Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             89999999999999997
Q 000742          265 YDEAILCYQKALNLAQS  281 (1313)
Q Consensus       265 ~~~A~~~~~kal~l~~~  281 (1313)
                      +++|+.+|++++++.|.
T Consensus       102 ~~~A~~~~~kal~l~P~  118 (145)
T d1zu2a1         102 FDLATQFFQQAVDEQPD  118 (145)
T ss_dssp             HHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHCCCCCCCC
T ss_conf             78763121100025988

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.62  E-value=1.9e-09  Score=80.26  Aligned_cols=85  Identities=28%  Similarity=0.282  Sum_probs=31.9

Q ss_pred             CCCEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             41099825798993689999999730798338976699999388999999841999962499810377998889999998
Q 000742         1059 ESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKA 1138 (1313)
Q Consensus      1059 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~ 1138 (1313)
                      .|+.|++++|.++..    ....+...++|++|+|++|.|.......+..+     ..|++|+|++|.|+..    .+.+
T Consensus        55 ~L~~L~L~~N~i~~~----~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l-----~~L~~L~L~~N~l~~i----~~~~  121 (192)
T d1w8aa_          55 HLVKLELKRNQLTGI----EPNAFEGASHIQELQLGENKIKEISNKMFLGL-----HQLKTLNLYDNQISCV----MPGS  121 (192)
T ss_dssp             TCCEEECCSSCCCCB----CTTTTTTCTTCCEEECCSCCCCEECSSSSTTC-----TTCCEEECCSSCCCEE----CTTS
T ss_pred             EEEEEECCCCCCCCC----CCCCCCCCCCCCEEEECCCCCCCCCHHHHHCC-----CCCCCCCCCCCCCCCC----CHHH
T ss_conf             272130136322121----21222112222101003553443497998079-----7465524577453535----9778


Q ss_pred             HHCCCCCCEEECCCCCCC
Q ss_conf             622998469973489998
Q 000742         1139 LSENDTLEELNLADNASK 1156 (1313)
Q Consensus      1139 l~~~~~L~~L~Ls~N~i~ 1156 (1313)
                      +...++|++|+|++|.+.
T Consensus       122 f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         122 FEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             STTCTTCCEEECTTCCBC
T ss_pred             HCCCCCCCCCCCCCCCCC
T ss_conf             568753342000364434

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.60  E-value=1.9e-09  Score=80.26  Aligned_cols=11  Identities=45%  Similarity=0.794  Sum_probs=3.6

Q ss_pred             CCCEEECCCCC
Q ss_conf             83389766999
Q 000742         1087 GILELNLGGNP 1097 (1313)
Q Consensus      1087 ~L~~LdLs~N~ 1097 (1313)
                      +|++|+|++|+
T Consensus       127 ~L~~l~L~~N~  137 (192)
T d1w8aa_         127 SLTSLNLASNP  137 (192)
T ss_dssp             TCCEEECTTCC
T ss_pred             CCCCCCCCCCC
T ss_conf             33420003644

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.54  E-value=8.2e-09  Score=75.59  Aligned_cols=36  Identities=19%  Similarity=0.196  Sum_probs=15.8

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHH
Q ss_conf             249981037799888999999862299846997348999803
Q 000742         1117 LKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKEL 1158 (1313)
Q Consensus      1117 L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~ 1158 (1313)
                      |+.|++++|.|+..      ..+..+++|+.|+|++|.|++.
T Consensus        95 L~~L~l~~N~i~~l------~~~~~l~~L~~L~L~~N~i~~~  130 (198)
T d1m9la_          95 LEELWISYNQIASL------SGIEKLVNLRVLYMSNNKITNW  130 (198)
T ss_dssp             CCEEECSEEECCCH------HHHHHHHHSSEEEESEEECCCH
T ss_pred             CCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCHHCCC
T ss_conf             33333333222222------2222222341112341021255

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=9e-07  Score=60.44  Aligned_cols=66  Identities=9%  Similarity=0.061  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             99999999941999999999999999999179-0458999999999999749999999999999999
Q 000742          384 LVIGESYQKLRKFNKAIKWYTKSWEMYKSIGN-LEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRI  449 (1313)
Q Consensus       384 ~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~-~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~l  449 (1313)
                      +.+|.++++.|+|++|+.+|++|+++.+.... ....+.++.++|.+|...|++++|+.+|++|+++
T Consensus         9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_           9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             9999999997799999999999999886530147647899998726888657739888788779886

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=1.9e-06  Score=57.98  Aligned_cols=70  Identities=16%  Similarity=0.194  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999870799999999999999998627988-722688789999997029499999999999999897
Q 000742           31 ANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEK-HLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKD  101 (1313)
Q Consensus        31 ~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~-~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~  101 (1313)
                      ++.+|..++..|+|.+|+.+|++|+++.+...... ..+.++.++|.+|..+|++++|+.+| ++++++.|+
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y-~~aL~l~P~   78 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLT-KKLLELDPE   78 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHCTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHCCC
T ss_conf             99999999997799999999999999886530147647899998726888657739888788-779886929

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=8.9e-10  Score=82.75  Aligned_cols=61  Identities=18%  Similarity=0.076  Sum_probs=26.2

Q ss_pred             CCCEEECCCCCCCHHHHHHHHHHHCCCCCCEEEE-EEECCCCCHHHHHHHH-HHHHCCCCCCEEECCCCCCCHH
Q ss_conf             8338976699999388999999841999962499-8103779988899999-9862299846997348999803
Q 000742         1087 GILELNLGGNPIMKEGANALASLLMNPQCCLKVL-VLSKCQLGLAGVLQLI-KALSENDTLEELNLADNASKEL 1158 (1313)
Q Consensus      1087 ~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L-~Ls~n~i~~~g~~~l~-~~l~~~~~L~~L~Ls~N~i~~~ 1158 (1313)
                      .+..|++++|.++......+    .  ...+..+ .+++|.++.     ++ ..+..+++|+.|+|++|.|+..
T Consensus       154 ~l~~L~l~~n~l~~i~~~~~----~--~~~l~~~~~l~~n~l~~-----l~~~~f~~l~~L~~L~Ls~N~l~~l  216 (242)
T d1xwdc1         154 ESVILWLNKNGIQEIHNCAF----N--GTQLDELNLSDNNNLEE-----LPNDVFHGASGPVILDISRTRIHSL  216 (242)
T ss_dssp             SCEEEECCSSCCCEECTTTT----T--TCCEEEEECTTCTTCCC-----CCTTTTTTSCCCSEEECTTSCCCCC
T ss_pred             CCEEEECCCCCCCCCCCCCC----C--CHHHHCCCCCCCCCCCC-----CCHHHHCCCCCCCEEECCCCCCCCC
T ss_conf             10012200123333222222----2--01110121235432464-----2478866899999898979928945

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.38  E-value=4.6e-08  Score=70.05  Aligned_cols=19  Identities=26%  Similarity=0.373  Sum_probs=7.9

Q ss_pred             HHCCCCCCEEECCCCCCCH
Q ss_conf             6229984699734899980
Q 000742         1139 LSENDTLEELNLADNASKE 1157 (1313)
Q Consensus      1139 l~~~~~L~~L~Ls~N~i~~ 1157 (1313)
                      +..+++|+.|++++|.|++
T Consensus        61 ~~~l~~L~~L~l~~N~i~~   79 (124)
T d1dcea3          61 VANLPRLQELLLCNNRLQQ   79 (124)
T ss_dssp             GTTCSSCCEEECCSSCCCS
T ss_pred             CCCCCCCCEEECCCCCCCC
T ss_conf             1233555768888986588

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.37  E-value=8.2e-08  Score=68.17  Aligned_cols=14  Identities=14%  Similarity=0.237  Sum_probs=4.5

Q ss_pred             CCCCCEEEEECCCC
Q ss_conf             99976899425999
Q 000742          944 CKVLYSLNIENCSI  957 (1313)
Q Consensus       944 ~~~L~~L~L~~~~l  957 (1313)
                      +++|+.|++++|.|
T Consensus        42 l~~L~~L~l~~N~i   55 (124)
T d1dcea3          42 LRCLEVLQASDNAL   55 (124)
T ss_dssp             CTTCCEEECCSSCC
T ss_pred             HHCCCCCCCCCCCC
T ss_conf             43135453243211

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=4.8e-09  Score=77.35  Aligned_cols=62  Identities=18%  Similarity=0.126  Sum_probs=35.4

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCCCCCCEE-ECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             624998103779988899999986229984699-7348999803354210012335776543345444545331111011
Q 000742         1116 CLKVLVLSKCQLGLAGVLQLIKALSENDTLEEL-NLADNASKELTLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLF 1194 (1313)
Q Consensus      1116 ~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L-~Ls~N~i~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~ 1194 (1313)
                      .+..|++++|.++.     +...+.....+..+ .+++|.++....                                  
T Consensus       154 ~l~~L~l~~n~l~~-----i~~~~~~~~~l~~~~~l~~n~l~~l~~----------------------------------  194 (242)
T d1xwdc1         154 ESVILWLNKNGIQE-----IHNCAFNGTQLDELNLSDNNNLEELPN----------------------------------  194 (242)
T ss_dssp             SCEEEECCSSCCCE-----ECTTTTTTCCEEEEECTTCTTCCCCCT----------------------------------
T ss_pred             CCEEEECCCCCCCC-----CCCCCCCCHHHHCCCCCCCCCCCCCCH----------------------------------
T ss_conf             10012200123333-----222222201110121235432464247----------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             1247778421014678510121
Q 000742         1195 AMNTDCNDLEVADSEDDKIRVE 1216 (1313)
Q Consensus      1195 ~~~~~~~~L~~L~L~~n~i~~~ 1216 (1313)
                      ..+.++++|+.|++++|+++.+
T Consensus       195 ~~f~~l~~L~~L~Ls~N~l~~l  216 (242)
T d1xwdc1         195 DVFHGASGPVILDISRTRIHSL  216 (242)
T ss_dssp             TTTTTSCCCSEEECTTSCCCCC
T ss_pred             HHHCCCCCCCEEECCCCCCCCC
T ss_conf             8866899999898979928945

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.34  E-value=2.6e-07  Score=64.44  Aligned_cols=61  Identities=31%  Similarity=0.338  Sum_probs=25.7

Q ss_pred             CCCEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCH
Q ss_conf             83389766999993889999998419999624998103779988899999986229984699734899980
Q 000742         1087 GILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKE 1157 (1313)
Q Consensus      1087 ~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~ 1157 (1313)
                      +|+.|++++|.++..  ..+..+.     .|+.|++++|.|+..+   -...+..+++|+.|+|++|.+..
T Consensus        94 ~L~~L~l~~N~i~~l--~~~~~l~-----~L~~L~L~~N~i~~~~---~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_          94 TLEELWISYNQIASL--SGIEKLV-----NLRVLYMSNNKITNWG---EIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             HCCEEECSEEECCCH--HHHHHHH-----HSSEEEESEEECCCHH---HHHHHTTTTTCSEEEECSSHHHH
T ss_pred             CCCCCCCCCCCCCCC--CCCCCCC-----CCCCCCCCCCHHCCCC---CCCCCCCCCCCCEEECCCCCCCC
T ss_conf             233333333222222--2222222-----3411123410212554---22123677763023427984346

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.29  E-value=1.8e-05  Score=50.77  Aligned_cols=65  Identities=8%  Similarity=-0.151  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             99999999999941999999999999999999179045899999999999974999999999999999999
Q 000742          381 DSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAV  451 (1313)
Q Consensus       381 ~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~l~~  451 (1313)
                      .++..++.++...|++++|+.++++++++.+      ....+|..++.+|...|++.+|+..|+++.....
T Consensus        68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P------~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~  132 (179)
T d2ff4a2          68 LAHTAKAEAEIACGRASAVIAELEALTFEHP------YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLA  132 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf             9999999999887990578999999998498------5199999999999985579999999999999989

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.13  E-value=2.8e-05  Score=49.29  Aligned_cols=65  Identities=9%  Similarity=-0.007  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf             99999999999982789999999999999999810114279999999999998109899999999999999
Q 000742          209 SRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLA  279 (1313)
Q Consensus       209 ~~~~~~Lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~l~  279 (1313)
                      ..++..++.++...|++++|+.++++++.+.|      ....++..++.+|...|++.+|+..|+++....
T Consensus        67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P------~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L  131 (179)
T d2ff4a2          67 VLAHTAKAEAEIACGRASAVIAELEALTFEHP------YREPLWTQLITAYYLSDRQSDALGAYRRVKTTL  131 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf             99999999999887990578999999998498------519999999999998557999999999999998

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.04  E-value=1.5e-05  Score=51.27  Aligned_cols=56  Identities=13%  Similarity=0.018  Sum_probs=29.1

Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             99827899999999999999998101142799999999999981098999999999999999
Q 000742          219 YMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQ  280 (1313)
Q Consensus       219 y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~l~~  280 (1313)
                      .+..|++++|+..++++++..|      ..+..+..++.+|...|++++|+..+++++++.|
T Consensus         6 aL~~G~l~eAl~~l~~al~~~P------~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P   61 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKASP------KDASLRSSFIELLCIDGDFERADEQLMQSIKLFP   61 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCT------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG
T ss_pred             HHHCCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf             9888899999999999999789------9999999999999987999999999999998699

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.98  E-value=2.2e-06  Score=57.48  Aligned_cols=120  Identities=9%  Similarity=-0.020  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
Q ss_conf             98999999999999999980791245999999999999941999999999999999999179045899999999999974
Q 000742          354 FAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSN  433 (1313)
Q Consensus       354 ~~~~~A~~~~~~a~~l~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~  433 (1313)
                      +++++|+..++++++      ..|..+.++..+|.+|...|++++|+..|++++++.+      ....++..++.++...
T Consensus        10 G~l~eAl~~l~~al~------~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P------~~~~~~~~l~~ll~a~   77 (264)
T d1zbpa1          10 GQLQQALELLIEAIK------ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP------EYLPGASQLRHLVKAA   77 (264)
T ss_dssp             TCHHHHHHHHHHHHH------TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG------GGHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH------HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHC
T ss_conf             899999999999999------7899999999999999987999999999999998699------7389999999999834


Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999199267999987548999972039999999999999999
Q 000742          434 GDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEARRLQHEIDKLK  491 (1313)
Q Consensus       434 g~~~~A~~~~~kAl~l~~~~~~~~~~~~al~~L~~~~~~~~~~~~~a~~~~e~~~~l~  491 (1313)
                      +..+++...+.++..    ...+ .....+...+..+ ...++.++|....+....+.
T Consensus        78 ~~~~~a~~~~~~~~~----~~~p-~~~~~~l~~a~~~-~~~gd~~~A~~~~~~a~e~~  129 (264)
T d1zbpa1          78 QARKDFAQGAATAKV----LGEN-EELTKSLVSFNLS-MVSQDYEQVSELALQIEELR  129 (264)
T ss_dssp             HHHHHHTTSCCCEEC----CCSC-HHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHC----CCCC-HHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHCC
T ss_conf             663789987544420----3586-4799999999999-96799899999999998339

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.86  E-value=0.00019  Score=43.19  Aligned_cols=59  Identities=20%  Similarity=0.296  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH----HCCHHHHHHHHHHHHH
Q ss_conf             99999999998----2789999999999999999810114279999999999998----1098999999999999
Q 000742          211 LHHNLGNVYME----LRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYR----VQKYDEAILCYQKALN  277 (1313)
Q Consensus       211 ~~~~Lg~~y~~----~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~kal~  277 (1313)
                      +.+.+|.+|..    ..++++|+.+|+++.+.        ..+.+.+.+|.+|..    ..++++|+.+|++|.+
T Consensus        57 a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--------g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~  123 (133)
T d1klxa_          57 GCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR  123 (133)
T ss_dssp             HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC--------CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf             55567875330135310357888887500025--------74067789999998298467789999999999998

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=3.4e-06  Score=56.16  Aligned_cols=13  Identities=46%  Similarity=0.411  Sum_probs=5.2

Q ss_pred             CCCEECCCCCCCC
Q ss_conf             6763018888888
Q 000742         1253 PLQLLDLSNNGFS 1265 (1313)
Q Consensus      1253 ~L~~L~Ls~N~~~ 1265 (1313)
                      +|+.|+|++|+|.
T Consensus       104 ~l~~L~L~~Np~~  116 (156)
T d2ifga3         104 SLQELVLSGNPLH  116 (156)
T ss_dssp             CCCEEECCSSCCC
T ss_pred             CCCCCCCCCCCCC
T ss_conf             2124335798633

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.55  E-value=0.00041  Score=40.68  Aligned_cols=11  Identities=27%  Similarity=0.365  Sum_probs=3.6

Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999999
Q 000742            8 MSEAKRAYRSA   18 (1313)
Q Consensus         8 ~~~A~~~l~~a   18 (1313)
                      +++|+..|+++
T Consensus         9 ~~~A~~~~~ka   19 (133)
T d1klxa_           9 LKKAIQYYVKA   19 (133)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999999

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=3.3e-05  Score=48.82  Aligned_cols=146  Identities=18%  Similarity=0.115  Sum_probs=0.0

Q ss_pred             CCCCCHHHHHHHHHHHCC--CCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf             889890259999986104--886664654798899579999999851598658874577799711999999984189941
Q 000742          983 NSPVTGNAITNLLVKLDT--LKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQES 1060 (1313)
Q Consensus       983 n~~~~~~~~~~l~~~l~~--~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L 1060 (1313)
                      +. +....+..+...+..  ....+.|+++.......             +..+.+..+.-...........+...++.|
T Consensus         2 ~~-l~~~~ie~l~~~l~~~~~~~~~~Ldls~l~~~~~-------------l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L   67 (162)
T d1koha1           2 NE-LKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPD-------------LVAQNIDVVLNRRSSMAATLRIIEENIPEL   67 (162)
T ss_dssp             CS-CCHHHHHHHHHHHHTTBCSSSCCBCCCCCSSCTT-------------TTTTTCCCCTTSHHHHHHHHHHHHHHCTTC
T ss_pred             CC-CCHHHHHHHHHHHHHHCCHHHCEEECCCCCCCCH-------------HHHCCCHHHCCHHHHHHHHHHHHHHHCCCC
T ss_conf             98-8887999999999860113308653435989821-------------554664011225556766607889748787


Q ss_pred             CEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHH---HHHHHHH
Q ss_conf             0998257989936899999997307983389766999993889999998419999624998103779988---8999999
Q 000742         1061 VKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLA---GVLQLIK 1137 (1313)
Q Consensus      1061 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~---g~~~l~~ 1137 (1313)
                      +.|++++|.|++...  +...+..+++|+.|+|++|.|++.........+.     |+.|++++|.+...   .......
T Consensus        68 ~~L~Ls~N~i~~l~~--~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~-----L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          68 LSLNLSNNRLYRLDD--MSSIVQKAPNLKILNLSGNELKSERELDKIKGLK-----LEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             CCCCCCSSCCCCCSG--GGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCC-----CSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             CEEECCCCCCCCCCH--HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCC-----CCEEECCCCCCCCCCCCCHHHHHH
T ss_conf             886377766667731--5889865885610004357213423442220331-----042664899767676661569999


Q ss_pred             HHHCCCCCCEEE
Q ss_conf             862299846997
Q 000742         1138 ALSENDTLEELN 1149 (1313)
Q Consensus      1138 ~l~~~~~L~~L~ 1149 (1313)
                      .+..+|+|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
T ss_conf             999889978799

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.34  E-value=0.0094  Score=30.54  Aligned_cols=66  Identities=9%  Similarity=-0.074  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             99999999999994---199999999999999999917904589999999999997499999999999999999
Q 000742          380 SDSFLVIGESYQKL---RKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIA  450 (1313)
Q Consensus       380 a~~~~~lg~~y~~~---g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~l~  450 (1313)
                      ..+.+.+|+++.+.   .+.++|+..+++.+..     ++......++++|.+|+.+|+|++|..++++++++.
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-----~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie  103 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  103 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             101999999998279688999999999999854-----950599999999999998732999999999998239

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.30  E-value=0.018  Score=28.40  Aligned_cols=69  Identities=7%  Similarity=-0.043  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999827---899999999999999998101142799999999999981098999999999999999706
Q 000742          210 RLHHNLGNVYMELR---MWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSME  283 (1313)
Q Consensus       210 ~~~~~Lg~~y~~~g---~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~l~~~~~  283 (1313)
                      .+.++.|.+.....   +.++|+..+++++...+     .....+++++|..|+++|+|++|..++++++++.|...
T Consensus        36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p-----~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~  107 (124)
T d2pqrb1          36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE-----SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  107 (124)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-----GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf             0199999999827968899999999999985495-----05999999999999987329999999999982399849

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=80.18  E-value=0.71  Score=16.58  Aligned_cols=55  Identities=5%  Similarity=-0.018  Sum_probs=22.1

Q ss_pred             HCHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHH
Q ss_conf             1999999999999999999179--045899999999-999974999999999999999
Q 000742          394 RKFNKAIKWYTKSWEMYKSIGN--LEGQALAKVNMG-NVLDSNGDWAGALDAFQEGYR  448 (1313)
Q Consensus       394 g~~~~A~~~~~kal~l~~~~~~--~~~~~~~~~~lg-~~y~~~g~~~~A~~~~~kAl~  448 (1313)
                      |.-++|...|++|.++....-.  +|.......|.+ ..|.-+++.++|....++|.+
T Consensus       137 ~~~~~a~~aY~~A~~ia~~~l~pt~PirLGLaLN~SVF~yEi~~~~~~A~~lAk~A~~  194 (220)
T d2o8pa1         137 CSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGK  194 (220)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             0599999999999999981089988406999998999999993699999999999988