Citrus Sinensis ID: 000743

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310---

MKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVAFSTISEPSASHVRKGNSGKPSLNTRIGLQRKKQTIKCSCPYPGIATLSFDLASLMFPYQMHESAAKNGDKQENFTTMEHGTETAGPNAMTAADGSNGHSMSTDTIEEHTWIKSLEECILRFSLSFLHLWNVDRELDKLLITEMKLKRPENFIVASGLQGEKGSLTLTFPGLKAGLELWKSSSEFCAMRSLTMVSLAQRMISLFHPSSAASSALAAFYTRNFAENFPDIKPPLLQLLVSFWQDESEHVRMAARSLFHCAASRAIPLPLCSPKGVADAKPVWSLSTTGDDEHANSNVEKISANELASDMLPETQGNSLVEESDVLSWLESFEVQDWISCVGGTSQDAMTSHIIVAAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAELLAEGMESTWKTCIGFEIPRLIGDIFFQIECVSNSSANLAGQHPAVPASIRETLVGILLPSLAMADILGFLTVVESQIWSTASDSPVHLVSIMTIIRVVRGSPRNVAQHLDKVVNFILQTMDPGNSVMRKTCLHTSMAALKEIVHVFPMVSLNDTSTKLAVGDAIGDIKKASIRVYDMQSVTKIKVLDASGPPGLPRESDSVATTVISALIFSPDGEGLVAFSEHGLMIRWWSLGSVWWEKLSRSLVPVQCTKLIFVPPWEGFSPNTARSSIMANIMGDSNLQEHAGSLSYADNLKLLIQNLDLSYRLEWVGDRKVLLTRHGLELGTFQL

cccccccEEEEEEcccEEEEEEEEEcccccccccEEEEEEccccccEEEEEEEEccccEEEEEccccccccccccccEEEEcccccEEEEEccccccEEEEEEEccccEEEEEEcccEEEEEcccccEEEEEEEccccEEEEcccccEEEEcEEEEEEEccccEEcccccccEEEEEEEEEcccccEEEEEEEcccccEEEcccccccccccccccEEEEEEEEcccEEEEEEEEEEccccccccccEEEEEEccccccccccEEEEEcccccEEEccccccccccccccccccccccccccccccccccccccccccccccEEEcEEEcccEEEEEcccccEEEEEEEcccEEEEEEEcccccccccccccccccccccEEEEcccccEEEEEEEcccccccccccccEEEEEcccccEEEEEcccccEEEEEEEccccEEEEEEcccccccccccEEEEEEccccEEEEEcccccEEEEEcccccccEEEEEcccccEEEEEEcccccccccccEEEEEEcccccEEEEEEcccccEEEEEEEEEEEEccccccEEEEccccEEEEEEEcccccEEEEEEEccccccEEEEEEcccccEEEEcccccccccccccccccccccccccccccEEEEEEcccccEEEEccccccccccccccccEEEccccccccccccccccccccccccccccEEEEEEEccccEEEEccccccccccccHHHHHHHHHHHccccccccEEEEEEEcccccEEEEccccccccccEEccccEEHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccHHcccccccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHcHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHcHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccEEEEcccccEEEEEcccccccccEEEEEEcccccEEEEEcccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEEccccHHHccccccccEEEEEEEEcccccccccccccccEEEcccccccHHHHcccccccHHHHHHHHccccEEEEEEEcccEEEEEEcccccccccc

ccccccEEEEEEEcEEEEEEEEEEccccccccccHEEEEEcccccEEEEEEEEEccccEEEEEEEccccccccccccccEcccccEEEEEEcccccccEEEEEEccccEEEEEEcccEEEEEEccccEEEEEEEcccccEccccccccEEEEEEEEEcccccccccccccccEEEEEEEEEcccccEEEEEEEEEcccEEEEEcccccccccccccEEEEEEEEEccEEEEEEEEEEccccccccccEEEEEEEEccccccccEEEEEcccccHHHHHcccccccccccEEEcccccEEEEEEccccccHccccccccccccccccEEEEcEEEEEccEEcccEEEEEcccccEEEEEEHHHcccccccccccccccccEEEEEcccccEEEEEEccccccccccccccEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEccccccccccEEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEcccccEEEccccEEEEEEEccccEEHEccccHHHHHHHHHHHHccccccccccccccccHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccHcccccccccccccccccccEEEcccccccccccEEEEEcHHHHHHHHHHHHccccccccHHHHHHccccccccccccHHcHHcccccccccccHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccEEEEEEcccccEEEEcccccccHHHHccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEcccccccccccccccccccccccHHccccccccccccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcHHHcHHHHccccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccEEEccccEEEEEEcccccccccEEEEEEcccccEEEEEccccccccccccccccEEEEEEEEEcccccEEEEEEccccEEEEEEccHHHHHHHcccccccEEEEEEEEcccccccccccccHHHHHHcccccHHHccccccHHHHHHHHHHccccEEEEEEEcccEEEEEEcccEcccccc

MKNPPKCTLVIVDTYGLTIVQTVFhgnlsigpwkfMDVVSlgedmgkhyGLMVDSVgrlqlvpiskeshldreegnglcksssQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFrllgsgstigeicfvdnlfcleggstnsyVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMnekfdyephfeipavsypsgvkfSIHFIQMSLYLLRMETVCFhveetsqwrpyisvwslsqkhsgpgkqcrmvgegfsfvdwvnnstfldenegsctgksdltfcqdtvprsehvdsrqagdgrddfvhKEKIVSSSmvisesfyapyaIVYGFFSGEIEVIQFDLferhnspgaslkvnsHVSRQYFLGHTGAVLCLAAHRMvgtakgwsFNEVLvsgsmdcsiriwdlgsgnlITVMHHhvapvrqiilsppqtehpwsdcflsvGEDFSVALASLETLRvermfpghpnypakvvwdcprgyiaclcrdhsrtsdavDVLFIWDVKTGARERVLRGTASHSMFDHFckgismnsisgsvlngntsvsslllpihedgtfrqsqiqndergvafstisepsashvrkgnsgkpslntriglqrkkqtikcscpypgiatlsFDLASLmfpyqmhesaakngdkqenfttmehgtetagpnamtaadgsnghsmstdtiEEHTWIKSLEECILRFSLSFLHLWNVDRELDKLLITEMklkrpenfivasglqgekgsltltfpgLKAGLELWKSSSEFCAMRSLTMVSLAQRMISLFHPSSAASSALAAFYTRnfaenfpdikppLLQLLVSFWQDESEHVRMAARSLFHCaasraiplplcspkgvadakpvwslsttgddehansnvekISANelasdmlpetqgnslveESDVLSWLESFEVQdwiscvggtsqdAMTSHIIVAAALAIWypslvkptlAMLVVQPLIKLVMATNEKYSSTAAELLAEGMESTWKTCIGFEIPRLIGDIFFQIECvsnssanlagqhpavpasIRETLVGILLPSLAMADILGFLTVVESQIwstasdspvhLVSIMTIIRVVRGSPRNVAQHLDKVVNFILQtmdpgnsvmrkTCLHTSMAALKEIVHVFpmvslndtstklAVGDAIGDIKKASIRVYDMQSVTKIKVldasgppglpresdsVATTVISALIfspdgeglvaFSEHGLMIRWWSLGSVWWEKLSrslvpvqctklifvppwegfspntarsSIMANIMGDSNLQEHAGSLSYADNLKLLIQNLDLSYRLEWVGDRKVLLTRhglelgtfql

MKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQdtvprsehvdsrqagdgrddfvHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDhsrtsdavDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVAFSTisepsashvrkgnsgkpslntriglqrkkqtiKCSCPYPGIATLSFDLASLMFPYQMHESAAKNGDKQENFTTMEHGTETAGPNAMTAADGSNGHSMSTDTIEEHTWIKSLEECILRFSLSFLHLWNVDRELDKLLITEMKLKRPENFIVasglqgekgsLTLTFPGLKAGLELWKSSSEFCAMRSLTMVSLAQRMISLFHPSSAASSALAAFYTRNFAENFPDIKPPLLQLLVSFWQDESEHVRMAARSLFHCAASRAIPLPLCSPKGVADAKPVWSLSttgddehansNVEKISANELASDMLPETQGNSLVEESDVLSWLESFEVQDWISCVGGTSQDAMTSHIIVAAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAELLAEGMESTWKTCIGFEIPRLIGDIFFQIECVSNSSANLAGQHPAVPASIRETLVGILLPSLAMADILGFLTVVESQIWStasdspvhlVSIMTIIRVVRGSPRNVAQHLDKVVNFILQTMDPGNSVMRKTCLHTSMAALKEIVHVFPMVSLNDTSTKLAVGDAIGDIKKASIRVYDMQSVTKIKVLDASGPPGLPRESDSVATTVISALIFSPDGEGLVAFSEHGLMIRWWSLGSVWWEKLSRSLVPVQCTKLIfvppwegfspNTARSSIMANIMGDSNLQEHAGSLSYADNLKLLIQNLDLSYRLEWVGDRKVLLtrhglelgtfql

MKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVAFSTISEPSASHVRKGNSGKPSLNTRIGLQRKKQTIKCSCPYPGIATLSFDLASLMFPYQMHESAAKNGDKQENFTTMEHGTETAGPNAMTAADGSNGHSMSTDTIEEHTWIKSLEECILRFSLSFLHLWNVDRELDKLLITEMKLKRPENFIVASGLQGEKGSLTLTFPGLKAGLELWKSSSEFCAMRSLTMVSLAQRMISLFHPssaassalaaFYTRNFAENFPDIKPPLLQLLVSFWQDESEHVRMAARSLFHCAASRAIPLPLCSPKGVADAKPVWSLSTTGDDEHANSNVEKISANELASDMLPETQGNSLVEESDVLSWLESFEVQDWISCVGGTSQDAMTSHIIVAAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAELLAEGMESTWKTCIGFEIPRLIGDIFFQIECVSNSSANLAGQHPAVPASIRETLVGILLPSLAMADILGFLTVVESQIWSTASDSPVHLVSIMTIIRVVRGSPRNVAQHLDKVVNFILQTMDPGNSVMRKTCLHTSMAALKEIVHVFPMVSLNDTSTKLAVGDAIGDIKKASIRVYDMQSVTKIKVLDASGPPGLPRESDSVATTVISALIFSPDGEGLVAFSEHGLMIRWWSLGSVWWEKLSRSLVPVQCTKLIFVPPWEGFSPNTARSSIMANIMGDSNLQEHAGSLSYADNLKLLIQNLDLSYRLEWVGDRKVLLTRHGLELGTFQL

******CTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPI********************LDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFC**********************VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIH************************************************KKQTIKCSCPYPGIATLSFDLASLMFPYQ*********************************************IEEHTWIKSLEECILRFSLSFLHLWNVDRELDKLLITEMKLKRPENFIVASGLQGEKGSLTLTFPGLKAGLELWKSSSEFCAMRSLTMVSLAQRMISLFHPSSAASSALAAFYTRNFAENFPDIKPPLLQLLVSFWQDESEHVRMAARSLFHCAASRAIPLPLCSPKGVADAKPVW***************************************SDVLSWLESFEVQDWISCVGGTSQDAMTSHIIVAAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAELLAEGMESTWKTCIGFEIPRLIGDIFFQIECVSNSSANLAGQHPAVPASIRETLVGILLPSLAMADILGFLTVVESQIWSTASDSPVHLVSIMTIIRVVRGSPRNVAQHLDKVVNFILQTMDPGNSVMRKTCLHTSMAALKEIVHVFPMVSLNDTSTKLAVGDAIGDIKKASIRVYDMQSVTKIKVLD*************VATTVISALIFSPDGEGLVAFSEHGLMIRWWSLGSVWWEKLSRSLVPVQCTKLIFVPPWEGFSPNTARSSIMANIMGD*NLQEHAGSLSYADNLKLLIQNLDLSYRLEWVGDRKVLLTRHGLELG****

*****KC***IVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVP*********************LDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSY**GVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTF**************TFCQDTVPRSEHVDSRQAGDG*DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERH**********SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVAFSTISEPSASHVRKGNSGKPSLNTRIGLQRKKQTIKCSCPYPGIATLSFDLASLMFPYQMHESAAKNGDKQENFTTMEHGTETAGPNAMT***************EEHTWIKSLEECILRFSLSFLHLWNVDRELDKLLITEMKLKRPENFIVASGLQGEKGSLTLTFPGLKAGLELWKSSSEFCAMRSLTMVSLAQRMISLFH***AASSALAAFYTRNFAENFPDIKPPLLQLLVSFWQDESEHVRMAARSLFHCAASRAIPLP**SPKGVADAKPVWSLS******************************************************************IIVAAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAELLAEGMESTWKTCIGFEIPRLIGDIFFQI********************IRETLVGILLPSLAMADILGFLTVVESQIWS*****PVHLVSIMTIIRVVRGSPRNVAQHLDKVVNFILQTMDPGNSVMRKTCLHTSMAALKEIVHVFPMVSLNDTSTKLAVGDAIGDIKKASIRVYDMQSVTKIKVLDASG*********SVATTVISALIFSPDGEGLVAFSEHGLMIRWWSLGSVWWEKLSRSLVPVQCT*******************************************KLLIQNLDLSYRLEWVGDRKVLLTRHGLELGTFQ*

MKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSL**********CRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVP**********GDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVAFSTISE*************PSLNTRIGLQRKKQTIKCSCPYPGIATLSFDLASLMFPYQMHESAAKNGDKQENFTTMEHGTETAGPNAMTAADGSNGHSMSTDTIEEHTWIKSLEECILRFSLSFLHLWNVDRELDKLLITEMKLKRPENFIVASGLQGEKGSLTLTFPGLKAGLELWKSSSEFCAMRSLTMVSLAQRMISLFHPSSAASSALAAFYTRNFAENFPDIKPPLLQLLVSFWQDESEHVRMAARSLFHCAASRAIPLPLCSPKGVADAKPVWSLSTTGDDEHANSNVEKISANELASDMLPETQGNSLVEESDVLSWLESFEVQDWISCVGGTSQDAMTSHIIVAAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAELLAEGMESTWKTCIGFEIPRLIGDIFFQIECVSNSSANLAGQHPAVPASIRETLVGILLPSLAMADILGFLTVVESQIWSTASDSPVHLVSIMTIIRVVRGSPRNVAQHLDKVVNFILQTMDPGNSVMRKTCLHTSMAALKEIVHVFPMVSLNDTSTKLAVGDAIGDIKKASIRVYDMQSVTKIKVLDASGPPGLPRESDSVATTVISALIFSPDGEGLVAFSEHGLMIRWWSLGSVWWEKLSRSLVPVQCTKLIFVPPWEGFSPNTARSSIMANIMGDSNLQEHAGSLSYADNLKLLIQNLDLSYRLEWVGDRKVLLTRHGLELGTFQL

*KNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKES***************QLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVAFSTISEPSASHVRK*****PSLNTRIGLQRKKQTIKCSCPYPGIATLSFDLASLMFPYQMHES**********************************HSMSTDTIEEHTWIKSLEECILRFSLSFLHLWNVDRELDKLLITEMKLKRPENFIVASGLQGEKGSLTLTFPGLKAGLELWKSSSEFCAMRSLTMVSLAQRMISLFHPSSAASSALAAFYTRNFAENFPDIKPPLLQLLVSFWQDESEHVRMAARSLFHCAASRAIPLPLCSP*********W**************************************ESDVLSWLESFEVQDWISCVGGTSQDAMTSHIIVAAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAELLAEGMESTWKTCIGFEIPRLIGDIFFQIECVSNSS******HPAVPASIRETLVGILLPSLAMADILGFLTVVESQIWSTASDSPVHLVSIMTIIRVVRGSPRNVAQHLDKVVNFILQTMDPGNSVMRKTCLHTSMAALKEIVHVFPMVSLNDTSTKLAVGDAIGDIKKASIRVYDMQSVTKIKVLDASGPPGLPRESDSVATTVISALIFSPDGEGLVAFSEHGLMIRWWSLGSVWWEKLSRSLVPVQCTKLIFVPPWEGFSPNTARSSIMANIMGDSNLQEHAGSLSYADNLKLLIQNLDLSYRLEWVGDRKVLLTRHGLELGTFQL

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1313	2.2.26 [Sep-21-2011]
Q920I9		1489	WD repeat-containing prot	yes	no	0.265	0.234	0.223	2e-10
Q9Y4E6		1490	WD repeat-containing prot	yes	no	0.265	0.233	0.220	2e-10
Q9ERH3		1488	WD repeat-containing prot	yes	no	0.274	0.242	0.220	1e-09
Q922V4		513	Pleiotropic regulator 1 O	no	no	0.110	0.282	0.32	8e-07
Q9WUC8		514	Pleiotropic regulator 1 O	no	no	0.110	0.282	0.32	8e-07
O43660		514	Pleiotropic regulator 1 O	no	no	0.110	0.282	0.32	8e-07
Q2KID6		513	Pleiotropic regulator 1 O	no	no	0.110	0.282	0.32	9e-07
Q12417		451	Pre-mRNA-splicing factor	yes	no	0.090	0.263	0.304	1e-06
O13615		473	Pre-mRNA-splicing factor	yes	no	0.099	0.274	0.313	5e-06
Q93794		587	F-box/WD repeat-containin	no	no	0.074	0.166	0.299	9e-06

>sp\|Q920I9\|WDR7_MOUSE WD repeat-containing protein 7 OS=Mus musculus GN=Wdr7 PE=1 SV=3	Back alignment and function desciption

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/416 (22%), Positives = 162/416 (38%), Gaps = 67/416 (16%)

Query: 385 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 444
           GH   V CL     V       +   L+SG +D S+ IWD+ SG +  +   H   + Q+
Sbjct: 462 GHRNKVTCLLYPHQVSARYDQRY---LISGGVDFSVIIWDIFSGEMKHIFCVHGGEITQL 518

Query: 445 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVV-WDCPRGYIAC 503
           ++ P         C  SV  D SV L SL   +   +   H  +P +V+ W     Y+  
Sbjct: 519 LVPPENCSARVQHCICSVASDHSVGLLSLREKKCIMLASRH-LFPIQVIKWRPSDDYLVV 577

Query: 504 LCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGI--SMNSISGSVLNGN 561
            C D S        +++W + TGA +R   G  +  + +   + +  +++S+S   +N  
Sbjct: 578 GCTDGS--------VYVWQMDTGALDRCAMGITAVEILNACDEAVPAAVDSLSHPAVNLK 629

Query: 562 TSVSSLLLPIHEDGTFRQSQIQNDERGVAFSTISEPSASHVRKGNSGKPSLNTRIGLQRK 621
            +++   L   ++      ++Q     +  S  S+       KGN  K S N+ +     
Sbjct: 630 QAMTRRSLAALKN--MAHHKLQTLATNLLASEASD-------KGNLPKYSHNSLM----- 675

Query: 622 KQTIKCSCPYPGIATLSFDLASLMFPYQMHESAAKN---------------GDKQENFTT 666
            Q IK +   P I  L FD+ +L+      E++  N                DK  +F T
Sbjct: 676 VQAIKTNLTDPDIHVLFFDVEALIIQLLTEEASRPNTALISPENLQKASGSSDKGGSFLT 735

Query: 667 -------MEHGTETAGPN------AMTAADGSNGHSMSTDTIEEHTWIKSLEECILRFSL 713
                   +   ET   N           +         D+  E+   KS    +L ++L
Sbjct: 736 GKRAAVLFQQVKETIKENIKEHLLDEEEDEEEARRQSREDSDPEYRASKSKPLTLLEYNL 795

Query: 714 ---------SFLHLWNVDRELDKLLITEMKLKRPENFIVASGLQGEKGSLTLTFPG 760
                    S LH W ++  LD++ +  + + +P +  V+ GL    G ++L  PG
Sbjct: 796 TMDTAKLFMSCLHAWGLNEVLDEVCLDRLGMLKP-HCTVSFGLLSRGGHMSLMLPG 850

Mus musculus (taxid: 10090)

>sp\|Q9Y4E6\|WDR7_HUMAN WD repeat-containing protein 7 OS=Homo sapiens GN=WDR7 PE=1 SV=2	Back alignment and function description

>sp\|Q9ERH3\|WDR7_RAT WD repeat-containing protein 7 OS=Rattus norvegicus GN=Wdr7 PE=2 SV=1	Back alignment and function description

>sp\|Q922V4\|PLRG1_MOUSE Pleiotropic regulator 1 OS=Mus musculus GN=Plrg1 PE=2 SV=1	Back alignment and function description

>sp\|Q9WUC8\|PLRG1_RAT Pleiotropic regulator 1 OS=Rattus norvegicus GN=Plrg1 PE=2 SV=1	Back alignment and function description

>sp\|O43660\|PLRG1_HUMAN Pleiotropic regulator 1 OS=Homo sapiens GN=PLRG1 PE=1 SV=1	Back alignment and function description

>sp\|Q2KID6\|PLRG1_BOVIN Pleiotropic regulator 1 OS=Bos taurus GN=PLRG1 PE=2 SV=1	Back alignment and function description

>sp\|Q12417\|PRP46_YEAST Pre-mRNA-splicing factor PRP46 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP46 PE=1 SV=1	Back alignment and function description

>sp\|O13615\|PRP46_SCHPO Pre-mRNA-splicing factor prp5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp5 PE=1 SV=1	Back alignment and function description

>sp\|Q93794\|SEL10_CAEEL F-box/WD repeat-containing protein sel-10 OS=Caenorhabditis elegans GN=sel-10 PE=1 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1313
225426140		1516	PREDICTED: uncharacterized protein LOC10	0.999	0.865	0.656	0.0
297742246		1521	unnamed protein product [Vitis vinifera]	0.988	0.853	0.656	0.0
255537597		1525	hypothetical protein RCOM_1689130 [Ricin	0.993	0.855	0.653	0.0
224053847		1500	predicted protein [Populus trichocarpa]	0.984	0.861	0.654	0.0
224075018		1360	predicted protein [Populus trichocarpa]	0.945	0.912	0.633	0.0
356511466		1464	PREDICTED: uncharacterized protein LOC10	0.972	0.872	0.592	0.0
356527654		1452	PREDICTED: uncharacterized protein LOC10	0.968	0.876	0.597	0.0
449457668		1510	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.984	0.855	0.573	0.0
297809371		1468	transducin family protein [Arabidopsis l	0.968	0.866	0.574	0.0
15237124		1446	transducin/WD40 domain-containing protei	0.953	0.865	0.559	0.0

>gi\|225426140\|ref\|XP_002272901.1\| PREDICTED: uncharacterized protein LOC100260315 [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1734 bits (4490), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 880/1340 (65%), Positives = 1035/1340 (77%), Gaps = 28/1340 (2%)

Query: 2    KNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQL 61
            + PPKCT+VIVD+Y LTIVQTVFHGNLSIGP KFM V+   E+      LMVD  G+LQ 
Sbjct: 177  RKPPKCTVVIVDSYSLTIVQTVFHGNLSIGPLKFMAVILSPENCEMQSALMVDPYGKLQS 236

Query: 62   VPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFR 121
            VPI K+  L  E G GL KSSS LD  I ++G+ EGG +VS+AT G    LV +  CIFR
Sbjct: 237  VPILKDPTLGGESGAGLHKSSSHLDTTIWEDGLSEGGPVVSIATHGQFFVLVYRTCCIFR 296

Query: 122  LLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVW 181
            LL SG+ IG+I FVDN  C E GST+ +++G MFLE   A  +  +   C    ENF VW
Sbjct: 297  LLASGTAIGKISFVDNHLCFEDGSTHLHIVGGMFLEGNDASSMPRSEDPCDITEENFIVW 356

Query: 182  DNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEE 241
            ++RGSAIVY++SY++  F+++P  EIPAVS+P   + SI FIQ++ YL R+E+VCFH+EE
Sbjct: 357  NDRGSAIVYSVSYLDNLFNFQPLCEIPAVSHPHDARLSISFIQLNHYLFRIESVCFHIEE 416

Query: 242  TSQWRPYISVWSLSQKHSGPGK---QCRMVGEGFSFVDWVNNSTFLDENEG-------SC 291
               W+P +++WSL Q+H    K   QC+MVG G  F D V       ++EG         
Sbjct: 417  PLLWKPLVTIWSLYQQHDDNRKLCPQCKMVGRGGLFTDSVVGFASFHKSEGHGHDVGIEP 476

Query: 292  TGK-SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFF 350
            TG+ ++LT  + T+P  E +++    D +  FV KE++VSSSMVISE+F+ PYA+VYGF+
Sbjct: 477  TGRETELTSQKSTIPSLEKMNNICRDDEKYSFVRKEQVVSSSMVISENFHTPYAVVYGFY 536

Query: 351  SGEIEVIQFD-LFERHNSPGAS--LKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSF 407
            SGEIEV +FD  F+   S G S  ++V+SH S+QYFLGHTGAVLCLAAHRMVG + GW+F
Sbjct: 537  SGEIEVARFDTFFQLLESHGQSPCVEVDSHASKQYFLGHTGAVLCLAAHRMVGNSNGWNF 596

Query: 408  NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFS 467
            N VLVSGSMDC+IR+WDL + NLITVMH HVA VRQIIL PP+T+ PWSDCFLSVGEDF 
Sbjct: 597  NHVLVSGSMDCTIRVWDLDTSNLITVMHQHVASVRQIILCPPRTDRPWSDCFLSVGEDFC 656

Query: 468  VALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 527
            VAL SLETLRVERMFPGHP+YPAKVVWD  RGYIACLCR++S TSDAVDVLFIWD+KTG 
Sbjct: 657  VALTSLETLRVERMFPGHPSYPAKVVWDGARGYIACLCRNYSGTSDAVDVLFIWDMKTGV 716

Query: 528  RERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDER 587
            RERVLRGTASHSMFD+F KGI+MNSISGSVLNG+TS SSLLLPI ED +  QS  ++  +
Sbjct: 717  RERVLRGTASHSMFDNFFKGINMNSISGSVLNGDTSASSLLLPIIEDASLLQSHFKHSVK 776

Query: 588  GVAFST-----ISEPSAS--HVRKGNSGKPSLNTRIGLQRKKQTIKCSCPYPGIATLSFD 640
            G+A S      ISEPS S  HV +G+S K    +    Q  K  +KCSCP+PGIATLSFD
Sbjct: 777  GIALSNTITTNISEPSTSQAHVNEGSSMKLISTSSSVFQGYKHPVKCSCPFPGIATLSFD 836

Query: 641  LASLMFPYQMHESAAKNGDKQENFTTMEHGTETAGPNAMTAADGSNGHSMSTDTIEEHTW 700
            LASLM     HE     GDKQ+N    E GTET  P+ MTA DGS+ +    +TIE H W
Sbjct: 837  LASLMSHCLKHEFIGNGGDKQDNTHMREPGTETLKPHHMTADDGSDLNGTLNNTIEGHDW 896

Query: 701  IKSLEECILRFSLSFLHLWNVDRELDKLLITEMKLKRPENFIVASGLQGEKGSLTLTFPG 760
            I SLE  +L+FSLSFLHLW+VD ELDKLLIT+MKL+RP+ FIV+ G QG++GSLTLTFPG
Sbjct: 897  ISSLERYLLQFSLSFLHLWDVDSELDKLLITDMKLERPQKFIVSPGFQGDRGSLTLTFPG 956

Query: 761  LKAGLELWKSSSEFCAMRSLTMVSLAQRMISLFHPSSAASSALAAFYTRNFAENFPDIKP 820
            L A LEL KSSSEFCAMRSLTMVSLAQR++SL H SSA  SALAAFYTR+FAE  PDIKP
Sbjct: 957  LGASLELLKSSSEFCAMRSLTMVSLAQRIVSLSHSSSAGCSALAAFYTRHFAEKIPDIKP 1016

Query: 821  PLLQLLVSFWQDESEHVRMAARSLFHCAASRAIPLPLCSPKGVADAKPVWSLSTTGDDEH 880
            P LQLLVSFWQDESEHVRMAARSLFHCAA+RAIP PLCS K +   K + S ++   +E 
Sbjct: 1017 PSLQLLVSFWQDESEHVRMAARSLFHCAAARAIPPPLCSRKAIDHTKLMISTNSKRANED 1076

Query: 881  ANSNVEKISANELASDMLPETQGNSLVEESDVLSWLESFEVQDWISCVGGTSQDAMTSHI 940
             +SN+E    + L SD  PET G+S VEE  +L+WLESFE QDWISCVGGTSQDAMTSHI
Sbjct: 1077 GSSNIENAYRDGLNSDTPPETPGDSQVEECKILAWLESFEEQDWISCVGGTSQDAMTSHI 1136

Query: 941  IVAAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAELLAEGMESTWKTCIGFE 1000
            IVAAALAIWYPSLVK  LAML V PL+KLVMA NEKYSSTAAELLAEGMESTWK CIG E
Sbjct: 1137 IVAAALAIWYPSLVKQNLAMLTVHPLMKLVMAMNEKYSSTAAELLAEGMESTWKECIGSE 1196

Query: 1001 IPRLIGDIFFQIECVSNSSANLAGQHPAVPASIRETLVGILLPSLAMADILGFLTVVESQ 1060
            IPRL+GDIFFQIECVS +S N A Q+PA+P +IRETLVG+LLPSLAMADI GFL+V+ESQ
Sbjct: 1197 IPRLVGDIFFQIECVSGTSGNSAAQNPAIPVTIRETLVGVLLPSLAMADIPGFLSVIESQ 1256

Query: 1061 IWSTASDSPVHLVSIMTIIRVVRGSPRNVAQHLDKVVNFILQTMDPGNSVMRKTCLHTSM 1120
            IWSTASDSPVHLVS+MT+IRVVRGSPRN+ Q LDKVVNFILQTMDPGNSVMR+TCL +SM
Sbjct: 1257 IWSTASDSPVHLVSLMTLIRVVRGSPRNLIQSLDKVVNFILQTMDPGNSVMRRTCLQSSM 1316

Query: 1121 AALKEIVHVFPMVSLNDTSTKLAVGDAIGDIKKASIRVYDMQSVTKIKVLDASGPPGLPR 1180
             ALKE+V VFPMV+ ND+ST+LAVGDAIG+I  ASIR+YD+QSVTKIKVLDAS PPGLP 
Sbjct: 1317 TALKEVVRVFPMVAQNDSSTRLAVGDAIGEINNASIRIYDLQSVTKIKVLDASAPPGLPS 1376

Query: 1181 ----ESDSVATTVISALIFSPDGEGLVAFSEHGLMIRWWSLGSVWWEKLSRSLVPVQCTK 1236
                 S++  TT ISAL FSPDGEGLVAFSEHGLMIRWWSLGS WWEKL R+ VPVQ TK
Sbjct: 1377 LLSGASETTLTTAISALSFSPDGEGLVAFSEHGLMIRWWSLGSAWWEKLGRNFVPVQYTK 1436

Query: 1237 LIFVPPWEGFSPNTARSSIMANIMG---DSNLQEHAGSLSYADNLKLLIQNLDLSYRLEW 1293
            LIFVPPWEG SPN++RSS+MA+I+G    +N QE+       D LK+LI N+DLSYRLEW
Sbjct: 1437 LIFVPPWEGMSPNSSRSSVMASILGHDRQANSQENTKGSGDMDCLKVLIHNIDLSYRLEW 1496

Query: 1294 VGDRKVLLTRHGLELGTFQL 1313
            VG+R+VL+ RHG ELGTFQL
Sbjct: 1497 VGERRVLILRHGRELGTFQL 1516

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297742246\|emb\|CBI34395.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255537597\|ref\|XP_002509865.1\| hypothetical protein RCOM_1689130 [Ricinus communis] gi\|223549764\|gb\|EEF51252.1\| hypothetical protein RCOM_1689130 [Ricinus communis]	Back alignment and taxonomy information

>gi\|224053847\|ref\|XP_002298009.1\| predicted protein [Populus trichocarpa] gi\|222845267\|gb\|EEE82814.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224075018\|ref\|XP_002304520.1\| predicted protein [Populus trichocarpa] gi\|222841952\|gb\|EEE79499.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356511466\|ref\|XP_003524447.1\| PREDICTED: uncharacterized protein LOC100816646 [Glycine max]	Back alignment and taxonomy information

>gi\|356527654\|ref\|XP_003532423.1\| PREDICTED: uncharacterized protein LOC100818675 [Glycine max]	Back alignment and taxonomy information

>gi\|449457668\|ref\|XP_004146570.1\| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101221785 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297809371\|ref\|XP_002872569.1\| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi\|297318406\|gb\|EFH48828.1\| transducin family protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|15237124\|ref\|NP_192866.1\| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi\|5596473\|emb\|CAB51411.1\| putative protein [Arabidopsis thaliana] gi\|7267826\|emb\|CAB81228.1\| putative protein [Arabidopsis thaliana] gi\|332657591\|gb\|AEE82991.1\| transducin/WD40 domain-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1313
TAIR\|locus:2128288		1446	AT4G11270 "AT4G11270" [Arabido	0.909	0.825	0.561	0.0
DICTYBASE\|DDB_G0272771		1342	wdr7 "WD40 repeat-containing p	0.102	0.100	0.294	5.3e-25
MGI\|MGI:1860197		1489	Wdr7 "WD repeat domain 7" [Mus	0.124	0.109	0.252	1.8e-12
FB\|FBgn0023510		1525	Rbcn-3B "Rabconnectin-3B" [Dro	0.148	0.127	0.267	1.6e-10
UNIPROTKB\|Q2KID6		513	PLRG1 "Pleiotropic regulator 1	0.111	0.286	0.335	1.5e-05
MGI\|MGI:1858197		513	Plrg1 "pleiotropic regulator 1	0.111	0.286	0.335	1.5e-05
UNIPROTKB\|O43660		514	PLRG1 "Pleiotropic regulator 1	0.111	0.285	0.335	1.5e-05
RGD\|621047		514	Plrg1 "pleiotropic regulator 1	0.111	0.285	0.335	1.5e-05
UNIPROTKB\|E2QYT6		515	PLRG1 "Uncharacterized protein	0.111	0.285	0.335	1.5e-05
SGD\|S000006072		451	PRP46 "Member of the NineTeen	0.176	0.514	0.261	3.3e-05

TAIR\|locus:2128288 AT4G11270 "AT4G11270" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3342 (1181.5 bits), Expect = 0., Sum P(2) = 0.
 Identities = 700/1246 (56%), Positives = 877/1246 (70%)

Query:    80 KSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGSTIGEICFVDNLF 139
             KS       + +N + EG   VSV T G+++A   K  C+F LL     IGEI FVD   
Sbjct:   235 KSEPSKGSLVSRNWLSEGEIAVSVITRGDLVAFFSKSRCVFWLLNREEAIGEISFVD--- 291

Query:   140 CLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKF 199
               +  S+N     AM L    +  IE       +  E F +WD  GSA+++ +SY++ +F
Sbjct:   292 --DSHSSNFLFKEAMILYSSTST-IEGDKD--DSISETFVLWDGSGSAVLFTMSYIDGEF 346

Query:   200 DYEPHFEI-PAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKH 258
              Y+   EI  A      VK +  F+Q+   LLR+E+ C  VE+ SQWRP+I++WSL   +
Sbjct:   347 TYKNFGEIVTAPDDKRSVKSTFCFVQLRQNLLRVESSCCDVEQPSQWRPHITIWSLCLGN 406

Query:   259 SGPGK--QCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAG 316
              G  K  Q +++GE   F DW+++S  LD  +GS + ++  +           + S  + 
Sbjct:   407 -GKEKELQRKVLGESSYFADWISSSC-LDP-KGSVSAETGTSQSGSQCSAKNDLQSFVSD 463

Query:   317 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNS 376
             +G+         VSSSMVISE+ Y PYA+VYGFFSGEIE+ +FD     +SP +S + ++
Sbjct:   464 NGQ--------CVSSSMVISENMYVPYAVVYGFFSGEIEIAKFDFLHGIDSPASSPRSDT 515

Query:   377 H--VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVM 434
                V +Q  LGHTG+VLCLAAHRM G A G + + VL+SGSMDC+IRIWDL SGN+I +M
Sbjct:   516 DPLVYKQRLLGHTGSVLCLAAHRMFGDANGCNSSHVLISGSMDCTIRIWDLESGNVIMIM 575

Query:   435 HHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVW 494
             HHHVAPVRQIILSP  T+ PWS CFLSVG+D  VAL+SLETLRVERMFPGHPNYP KVVW
Sbjct:   576 HHHVAPVRQIILSPAPTKRPWSKCFLSVGDDSCVALSSLETLRVERMFPGHPNYPTKVVW 635

Query:   495 DCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSIS 554
             D  RGYIACL R  SR SD +DVL+IWDVKTGARERVL G ASHSMFDHFC GIS  S S
Sbjct:   636 DGTRGYIACLFRSLSRKSDPIDVLYIWDVKTGARERVLHGAASHSMFDHFCAGISEKSHS 695

Query:   555 GSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVAFSTISEPSASH--VRKGNSGKPSL 612
             G+VLNGNTSVSSLL P+ E+   +   ++N ER  + ST S+PS+S    R+ +S   S 
Sbjct:   696 GTVLNGNTSVSSLLFPVDEER--KPFYLKNYERAASLST-SKPSSSQEKTREESSTASSF 752

Query:   613 NTRIGLQRKKQTIKCSCPYPGIATLSFDLASLMFPYQMHESAAKNGDKQENFTTMEHGTE 672
                I    +  +IKC+CP+PGI+TL FDL+SL    Q HE +    D  +    +E  ++
Sbjct:   753 LQSI----RYPSIKCTCPFPGISTLIFDLSSLAVYCQTHEDS----DMHK---MLEEKSD 801

Query:   673 TAGPNAMTAADGSNGHSMSTDTIEEHTWIKSLEECILRFSLSFLHLWNVDRELDKLLITE 732
              A     T+ D S       +  E     K++ E ++RFSLSFLHLW +D ELD++L+  
Sbjct:   802 KATAQQKTSKDKSPVQKTLDNHAEVVHMDKAIGEYLIRFSLSFLHLWGIDFELDQMLVAH 861

Query:   733 MKLKRPENFIVASGLQGEKGSLTLTFPGLKAGLELWKSSSEFCAMRSLTMVSLAQRMISL 792
             +KLKRPE+FIV SGLQG+KGSLTL FPGL A LELWKSSSEF A+RS+ MVSLAQ MISL
Sbjct:   862 LKLKRPESFIVTSGLQGDKGSLTLAFPGLNATLELWKSSSEFTALRSVIMVSLAQCMISL 921

Query:   793 FHPXXXXXXXXXXFYTRNFAENFPDIKPPLLQLLVSFWQDESEHVRMAARSLFHCAASRA 852
              H           FYTRN AE +PD+KPPLLQLLV+FWQD SE VRMAARSLFH  AS A
Sbjct:   922 SHSTATYSSNLAAFYTRNLAEKYPDLKPPLLQLLVTFWQDNSEQVRMAARSLFHHTASLA 981

Query:   853 IPLPLCSPKGVADAKPVWSLSTTGDDE-HANSNVEKISANELASDMLPETQGNSLVEESD 911
             IPLPLCS      A+ V SLS    +E    S  E+   N L S+ + + Q  S  EES+
Sbjct:   982 IPLPLCSDHASEHAELVRSLSGISLNEPKVLSTGEEYPTNSLDSEHIHQAQRLSQAEESE 1041

Query:   912 VLSWLESFEVQDWISCVGGTSQDAMTSHIIVAAALAIWYPSLVKPTLAMLVVQPLIKLVM 971
             +LSWLESFE+QDWISCVGGTSQDAM +HIIVAAAL+IWYPSLVKP LAMLVV  L+ LVM
Sbjct:  1042 ILSWLESFEMQDWISCVGGTSQDAMAAHIIVAAALSIWYPSLVKPGLAMLVVHKLLNLVM 1101

Query:   972 ATNEKYSSTAAELLAEGMESTWKTCIGFEIPRLIGDIFFQIECVSNSSANLAGQHPAVPA 1031
             A +EKYSSTAAELL+EGME+TWKT IG +IPR++ DIFFQIECVS+S     G +  VP+
Sbjct:  1102 AMSEKYSSTAAELLSEGMETTWKTWIGPDIPRIVSDIFFQIECVSSS----VGAYQVVPS 1157

Query:  1032 SIRETLVGILLPSLAMADILGFLTVVESQIWSTASDSPVHLVSIMTIIRVVRGSPRNVAQ 1091
             SI+ETLV +LLPSLAMAD+LGFL+++ESQIWSTASDSPVH+VS+ T+IR++R +PRN+  
Sbjct:  1158 SIKETLVEVLLPSLAMADVLGFLSIIESQIWSTASDSPVHVVSLRTLIRIIRAAPRNLVL 1217

Query:  1092 HLDKVVNFILQTMDPGNSVMRKTCLHTSMAALKEIVHVFPMVSLNDTSTKLAVGDAIGDI 1151
             HL+K VNF+LQTMDP N+VMRKTCL TSMA L+E+V VFPMV LND+ST+LA+GD I +I
Sbjct:  1218 HLEKAVNFVLQTMDPSNTVMRKTCLQTSMATLREVVRVFPMVILNDSSTRLAIGDVITEI 1277

Query:  1152 KKASIRVYDMQSVTKIKVLDASGPPGLPR----ESDSVATTVISALIFSPDGEGLVAFSE 1207
               A I +YDM+S+TKI+VLDASGPPGLP      S+S  TT ISAL FSPDGEGLVAFSE
Sbjct:  1278 NNACIHIYDMRSMTKIRVLDASGPPGLPNFLRGASESAVTTAISALSFSPDGEGLVAFSE 1337

Query:  1208 HGLMIRWWSLGSVWWEKLSRSLVPVQCTKLIFVPPWEGFSPNTARSSIMANIMGDSN--- 1264
             +GLMIRWWSLGSVWWEKLS+SL P+QCTKLIF+ PW+GFS +++R+S++++I  D     
Sbjct:  1338 NGLMIRWWSLGSVWWEKLSQSLTPIQCTKLIFIHPWDGFSSSSSRTSVISSISNDEQELP 1397

Query:  1265 LQEHAGSLSYADNLKLLIQNLDLSYRLEWVGDRKVLLTRHGLELGT 1310
             LQE A ++S+ + LK L+Q+LDLSYRLEW  +RKV+LTRH +ELGT
Sbjct:  1398 LQETAKNISHVERLKQLVQHLDLSYRLEWASERKVVLTRHNVELGT 1443

GO:0000166 "nucleotide binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

GO:0006486 "protein glycosylation" evidence=RCA

DICTYBASE\|DDB_G0272771 wdr7 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

MGI\|MGI:1860197 Wdr7 "WD repeat domain 7" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

FB\|FBgn0023510 Rbcn-3B "Rabconnectin-3B" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|Q2KID6 PLRG1 "Pleiotropic regulator 1" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

MGI\|MGI:1858197 Plrg1 "pleiotropic regulator 1, PRL1 homolog (Arabidopsis)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|O43660 PLRG1 "Pleiotropic regulator 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|621047 Plrg1 "pleiotropic regulator 1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QYT6 PLRG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

SGD\|S000006072 PRP46 "Member of the NineTeen Complex (NTC)" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00002533001	SubName- Full=Chromosome chr2 scaffold_132, whole genome shotgun sequence; (1480 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1313
cd00200		289	cd00200, WD40, WD40 domain, found in a number of e	1e-12
cd00200		289	cd00200, WD40, WD40 domain, found in a number of e	1e-12
cd00200		289	cd00200, WD40, WD40 domain, found in a number of e	2e-11
COG2319		466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-04
COG2319		466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-04
pfam00400		39	pfam00400, WD40, WD domain, G-beta repeat	8e-04
cd00200		289	cd00200, WD40, WD40 domain, found in a number of e	9e-04
PRK04313		237	PRK04313, PRK04313, 30S ribosomal protein S4e; Val	0.001
smart00320		40	smart00320, WD40, WD40 repeats	0.001
COG1471		241	COG1471, RPS4A, Ribosomal protein S4E [Translation	0.001
COG2319		466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

Back alignment and domain information

 Score = 70.1 bits (172), Expect = 1e-12
 Identities = 45/156 (28%), Positives = 65/156 (41%), Gaps = 23/156 (14%)

Query: 379 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHV 438
            R+   GHTG V C+A              ++L +GS D +I++WDL +G L+  +  H 
Sbjct: 1   LRRTLKGHTGGVTCVAFS---------PDGKLLATGSGDGTIKVWDLETGELLRTLKGHT 51

Query: 439 APVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPR 498
            PVR +  S             S   D ++ L  LET    R   GH +Y + V +  P 
Sbjct: 52  GPVRDVAAS------ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFS-PD 104

Query: 499 GYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 534
           G I                + +WDV+TG     LRG
Sbjct: 105 GRILSSSSRDKT-------IKVWDVETGKCLTTLRG 133

Length = 289

Back alignment and domain information

>gnl\|CDD\|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|201208 pfam00400, WD40, WD domain, G-beta repeat	Back alignment and domain information

Back alignment and domain information

>gnl\|CDD\|179820 PRK04313, PRK04313, 30S ribosomal protein S4e; Validated	Back alignment and domain information

>gnl\|CDD\|197651 smart00320, WD40, WD40 repeats	Back alignment and domain information

>gnl\|CDD\|224388 COG1471, RPS4A, Ribosomal protein S4E [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1313
KOG0272		459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.95
KOG0263		707	consensus Transcription initiation factor TFIID, s	99.94
KOG0271		480	consensus Notchless-like WD40 repeat-containing pr	99.94
KOG0271		480	consensus Notchless-like WD40 repeat-containing pr	99.93
KOG0272		459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.93
KOG0286		343	consensus G-protein beta subunit [General function	99.92
KOG0279		315	consensus G protein beta subunit-like protein [Sig	99.91
KOG0263		707	consensus Transcription initiation factor TFIID, s	99.91
KOG0265		338	consensus U5 snRNP-specific protein-like factor an	99.91
KOG0279		315	consensus G protein beta subunit-like protein [Sig	99.91
KOG0300		481	consensus WD40 repeat-containing protein [Function	99.9
KOG0285		460	consensus Pleiotropic regulator 1 [RNA processing	99.9
KOG0281		499	consensus Beta-TrCP (transducin repeats containing	99.89
KOG0276		794	consensus Vesicle coat complex COPI, beta' subunit	99.89
KOG0276		794	consensus Vesicle coat complex COPI, beta' subunit	99.89
KOG0319		775	consensus WD40-repeat-containing subunit of the 18	99.89
KOG0295		406	consensus WD40 repeat-containing protein [Function	99.88
KOG0291		893	consensus WD40-repeat-containing subunit of the 18	99.88
KOG0313		423	consensus Microtubule binding protein YTM1 (contai	99.87
KOG0264		422	consensus Nucleosome remodeling factor, subunit CA	99.87
KOG0266		456	consensus WD40 repeat-containing protein [General	99.87
KOG0266		456	consensus WD40 repeat-containing protein [General	99.87
KOG0284		464	consensus Polyadenylation factor I complex, subuni	99.86
KOG0286		343	consensus G-protein beta subunit [General function	99.86
KOG0285		460	consensus Pleiotropic regulator 1 [RNA processing	99.86
KOG0281		499	consensus Beta-TrCP (transducin repeats containing	99.86
KOG0315		311	consensus G-protein beta subunit-like protein (con	99.85
KOG0292		1202	consensus Vesicle coat complex COPI, alpha subunit	99.85
KOG0284		464	consensus Polyadenylation factor I complex, subuni	99.85
PTZ00421		493	coronin; Provisional	99.84
KOG0318		603	consensus WD40 repeat stress protein/actin interac	99.84
KOG0273		524	consensus Beta-transducin family (WD-40 repeat) pr	99.84
KOG0273		524	consensus Beta-transducin family (WD-40 repeat) pr	99.84
KOG0291		893	consensus WD40-repeat-containing subunit of the 18	99.84
KOG0319		775	consensus WD40-repeat-containing subunit of the 18	99.84
KOG0313		423	consensus Microtubule binding protein YTM1 (contai	99.84
KOG0277		311	consensus Peroxisomal targeting signal type 2 rece	99.83
KOG0292		1202	consensus Vesicle coat complex COPI, alpha subunit	99.83
KOG0274		537	consensus Cdc4 and related F-box and WD-40 protein	99.83
KOG0645		312	consensus WD40 repeat protein [General function pr	99.82
KOG0295		406	consensus WD40 repeat-containing protein [Function	99.82
PTZ00421		493	coronin; Provisional	99.82
KOG0316		307	consensus Conserved WD40 repeat-containing protein	99.82
KOG0315		311	consensus G-protein beta subunit-like protein (con	99.82
KOG0274		537	consensus Cdc4 and related F-box and WD-40 protein	99.82
PTZ00420		568	coronin; Provisional	99.8
PTZ00420		568	coronin; Provisional	99.8
cd00200		289	WD40 WD40 domain, found in a number of eukaryotic	99.8
KOG0282		503	consensus mRNA splicing factor [Function unknown]	99.8
cd00200		289	WD40 WD40 domain, found in a number of eukaryotic	99.79
PLN00181		793	protein SPA1-RELATED; Provisional	99.78
KOG0283		712	consensus WD40 repeat-containing protein [Function	99.77
KOG0306		888	consensus WD40-repeat-containing subunit of the 18	99.77
KOG0265		338	consensus U5 snRNP-specific protein-like factor an	99.77
KOG0973		942	consensus Histone transcription regulator HIRA, WD	99.77
KOG0275		508	consensus Conserved WD40 repeat-containing protein	99.77
KOG0277		311	consensus Peroxisomal targeting signal type 2 rece	99.76
KOG0293		519	consensus WD40 repeat-containing protein [Function	99.76
PLN00181		793	protein SPA1-RELATED; Provisional	99.76
KOG0645		312	consensus WD40 repeat protein [General function pr	99.75
KOG1332		299	consensus Vesicle coat complex COPII, subunit SEC1	99.74
KOG0301		745	consensus Phospholipase A2-activating protein (con	99.74
KOG0275		508	consensus Conserved WD40 repeat-containing protein	99.74
KOG0269		839	consensus WD40 repeat-containing protein [Function	99.74
KOG0316		307	consensus Conserved WD40 repeat-containing protein	99.73
KOG0318		603	consensus WD40 repeat stress protein/actin interac	99.73
KOG0264		422	consensus Nucleosome remodeling factor, subunit CA	99.73
KOG0301		745	consensus Phospholipase A2-activating protein (con	99.73
KOG0294		362	consensus WD40 repeat-containing protein [Function	99.73
KOG0267		825	consensus Microtubule severing protein katanin p80	99.72
KOG0282		503	consensus mRNA splicing factor [Function unknown]	99.72
KOG0296		399	consensus Angio-associated migratory cell protein	99.71
KOG0270		463	consensus WD40 repeat-containing protein [Function	99.71
KOG0296		399	consensus Angio-associated migratory cell protein	99.7
KOG0640		430	consensus mRNA cleavage stimulating factor complex	99.69
KOG0310		487	consensus Conserved WD40 repeat-containing protein	99.69
KOG0643		327	consensus Translation initiation factor 3, subunit	99.68
KOG0278		334	consensus Serine/threonine kinase receptor-associa	99.68
KOG0308		735	consensus Conserved WD40 repeat-containing protein	99.68
KOG0641		350	consensus WD40 repeat protein [General function pr	99.68
KOG0302		440	consensus Ribosome Assembly protein [General funct	99.68
KOG0305		484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.67
KOG0302		440	consensus Ribosome Assembly protein [General funct	99.66
KOG0300		481	consensus WD40 repeat-containing protein [Function	99.66
KOG0306		888	consensus WD40-repeat-containing subunit of the 18	99.66
KOG0269		839	consensus WD40 repeat-containing protein [Function	99.66
KOG0308		735	consensus Conserved WD40 repeat-containing protein	99.66
KOG0289		506	consensus mRNA splicing factor [General function p	99.66
KOG1408		1080	consensus WD40 repeat protein [Function unknown]	99.64
KOG0288		459	consensus WD40 repeat protein TipD [General functi	99.64
KOG0641		350	consensus WD40 repeat protein [General function pr	99.62
KOG0268		433	consensus Sof1-like rRNA processing protein (conta	99.62
KOG0267		825	consensus Microtubule severing protein katanin p80	99.62
KOG0289		506	consensus mRNA splicing factor [General function p	99.62
KOG0305		484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.61
KOG1539		910	consensus WD repeat protein [General function pred	99.6
KOG1446		311	consensus Histone H3 (Lys4) methyltransferase comp	99.59
KOG0650		733	consensus WD40 repeat nucleolar protein Bop1, invo	99.59
KOG0646		476	consensus WD40 repeat protein [General function pr	99.58
KOG0646		476	consensus WD40 repeat protein [General function pr	99.58
KOG0303		472	consensus Actin-binding protein Coronin, contains	99.58
KOG0772		641	consensus Uncharacterized conserved protein, conta	99.58
KOG0772		641	consensus Uncharacterized conserved protein, conta	99.57
KOG0283		712	consensus WD40 repeat-containing protein [Function	99.57
KOG0973		942	consensus Histone transcription regulator HIRA, WD	99.55
KOG1407		313	consensus WD40 repeat protein [Function unknown]	99.55
KOG0299		479	consensus U3 snoRNP-associated protein (contains W	99.55
KOG0310		487	consensus Conserved WD40 repeat-containing protein	99.55
KOG0268		433	consensus Sof1-like rRNA processing protein (conta	99.54
KOG4283		397	consensus Transcription-coupled repair protein CSA	99.54
KOG0303		472	consensus Actin-binding protein Coronin, contains	99.54
KOG0299		479	consensus U3 snoRNP-associated protein (contains W	99.53
KOG0640		430	consensus mRNA cleavage stimulating factor complex	99.51
KOG0270		463	consensus WD40 repeat-containing protein [Function	99.51
KOG0321		720	consensus WD40 repeat-containing protein L2DTL [Fu	99.51
KOG2096		420	consensus WD40 repeat protein [General function pr	99.5
KOG0288		459	consensus WD40 repeat protein TipD [General functi	99.5
KOG2445		361	consensus Nuclear pore complex component (sc Seh1)	99.49
KOG1407		313	consensus WD40 repeat protein [Function unknown]	99.48
KOG0647		347	consensus mRNA export protein (contains WD40 repea	99.48
KOG1332		299	consensus Vesicle coat complex COPII, subunit SEC1	99.48
KOG0643		327	consensus Translation initiation factor 3, subunit	99.48
KOG4283		397	consensus Transcription-coupled repair protein CSA	99.48
KOG0294		362	consensus WD40 repeat-containing protein [Function	99.46
KOG0293		519	consensus WD40 repeat-containing protein [Function	99.43
KOG1446		311	consensus Histone H3 (Lys4) methyltransferase comp	99.42
KOG1007		370	consensus WD repeat protein TSSC1, WD repeat super	99.42
KOG1273		405	consensus WD40 repeat protein [General function pr	99.41
KOG0307		1049	consensus Vesicle coat complex COPII, subunit SEC3	99.41
KOG0278		334	consensus Serine/threonine kinase receptor-associa	99.41
KOG0642		577	consensus Cell-cycle nuclear protein, contains WD-	99.4
KOG1517		1387	consensus Guanine nucleotide binding protein MIP1	99.38
KOG4378		673	consensus Nuclear protein COP1 [Signal transductio	99.38
KOG1036		323	consensus Mitotic spindle checkpoint protein BUB3,	99.35
KOG1034		385	consensus Transcriptional repressor EED/ESC/FIE, r	99.35
KOG1274		933	consensus WD40 repeat protein [General function pr	99.34
KOG0307		1049	consensus Vesicle coat complex COPII, subunit SEC3	99.34
KOG1445		1012	consensus Tumor-specific antigen (contains WD repe	99.33
KOG1274		933	consensus WD40 repeat protein [General function pr	99.33
KOG2048		691	consensus WD40 repeat protein [General function pr	99.32
KOG0649		325	consensus WD40 repeat protein [General function pr	99.31
KOG0321		720	consensus WD40 repeat-containing protein L2DTL [Fu	99.3
KOG0290		364	consensus Conserved WD40 repeat-containing protein	99.29
KOG0639		705	consensus Transducin-like enhancer of split protei	99.29
KOG0647		347	consensus mRNA export protein (contains WD40 repea	99.28
KOG1408		1080	consensus WD40 repeat protein [Function unknown]	99.28
KOG2106		626	consensus Uncharacterized conserved protein, conta	99.26
KOG1007		370	consensus WD repeat protein TSSC1, WD repeat super	99.25
KOG0649		325	consensus WD40 repeat protein [General function pr	99.25
KOG0639		705	consensus Transducin-like enhancer of split protei	99.25
KOG0642		577	consensus Cell-cycle nuclear protein, contains WD-	99.25
TIGR03866		300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.24
KOG4328		498	consensus WD40 protein [Function unknown]	99.24
KOG1034		385	consensus Transcriptional repressor EED/ESC/FIE, r	99.22
KOG2048		691	consensus WD40 repeat protein [General function pr	99.22
KOG1539		910	consensus WD repeat protein [General function pred	99.22
KOG1009		434	consensus Chromatin assembly complex 1 subunit B/C	99.21
COG2319		466	FOG: WD40 repeat [General function prediction only	99.2
COG2319		466	FOG: WD40 repeat [General function prediction only	99.18
KOG1063		764	consensus RNA polymerase II elongator complex, sub	99.18
KOG0644		1113	consensus Uncharacterized conserved protein, conta	99.17
KOG2106		626	consensus Uncharacterized conserved protein, conta	99.17
KOG1188		376	consensus WD40 repeat protein [General function pr	99.17
KOG1445		1012	consensus Tumor-specific antigen (contains WD repe	99.17
KOG4378		673	consensus Nuclear protein COP1 [Signal transductio	99.17
KOG4328		498	consensus WD40 protein [Function unknown]	99.16
KOG2445		361	consensus Nuclear pore complex component (sc Seh1)	99.15
KOG1273		405	consensus WD40 repeat protein [General function pr	99.13
KOG1036		323	consensus Mitotic spindle checkpoint protein BUB3,	99.13
KOG1009		434	consensus Chromatin assembly complex 1 subunit B/C	99.13
KOG2096		420	consensus WD40 repeat protein [General function pr	99.12
KOG2394		636	consensus WD40 protein DMR-N9 [General function pr	99.11
TIGR03866		300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.11
KOG1587		555	consensus Cytoplasmic dynein intermediate chain [C	99.05
KOG1310		758	consensus WD40 repeat protein [General function pr	99.04
KOG2919		406	consensus Guanine nucleotide-binding protein [Gene	99.02
KOG1310		758	consensus WD40 repeat protein [General function pr	99.01
KOG1063		764	consensus RNA polymerase II elongator complex, sub	98.98
KOG0290		364	consensus Conserved WD40 repeat-containing protein	98.97
KOG0650		733	consensus WD40 repeat nucleolar protein Bop1, invo	98.93
KOG0644		1113	consensus Uncharacterized conserved protein, conta	98.93
KOG2919		406	consensus Guanine nucleotide-binding protein [Gene	98.92
KOG1188		376	consensus WD40 repeat protein [General function pr	98.91
KOG0322		323	consensus G-protein beta subunit-like protein GNB1	98.89
PF08662		194	eIF2A: Eukaryotic translation initiation factor eI	98.87
KOG1538		1081	consensus Uncharacterized conserved protein WDR10,	98.87
KOG0771		398	consensus Prolactin regulatory element-binding pro	98.87
KOG0974		967	consensus WD-repeat protein WDR6, WD repeat superf	98.87
KOG1524		737	consensus WD40 repeat-containing protein CHE-2 [Ge	98.86
KOG2394		636	consensus WD40 protein DMR-N9 [General function pr	98.84
KOG0974		967	consensus WD-repeat protein WDR6, WD repeat superf	98.8
KOG0322		323	consensus G-protein beta subunit-like protein GNB1	98.79
KOG4227		609	consensus WD40 repeat protein [General function pr	98.76
KOG1517		1387	consensus Guanine nucleotide binding protein MIP1	98.74
KOG2055		514	consensus WD40 repeat protein [General function pr	98.7
KOG2055		514	consensus WD40 repeat protein [General function pr	98.68
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	98.68
KOG0771		398	consensus Prolactin regulatory element-binding pro	98.68
KOG1523		361	consensus Actin-related protein Arp2/3 complex, su	98.67
KOG1587		555	consensus Cytoplasmic dynein intermediate chain [C	98.65
KOG2110		391	consensus Uncharacterized conserved protein, conta	98.65
KOG1272		545	consensus WD40-repeat-containing subunit of the 18	98.62
KOG1524		737	consensus WD40 repeat-containing protein CHE-2 [Ge	98.57
KOG4227		609	consensus WD40 repeat protein [General function pr	98.56
PF08662		194	eIF2A: Eukaryotic translation initiation factor eI	98.53
KOG4547		541	consensus WD40 repeat-containing protein [General	98.53
KOG1538		1081	consensus Uncharacterized conserved protein WDR10,	98.52
KOG1272		545	consensus WD40-repeat-containing subunit of the 18	98.49
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	98.48
KOG2110		391	consensus Uncharacterized conserved protein, conta	98.47
PRK01742		429	tolB translocation protein TolB; Provisional	98.45
KOG3881		412	consensus Uncharacterized conserved protein [Funct	98.4
KOG1523		361	consensus Actin-related protein Arp2/3 complex, su	98.37
KOG4547		541	consensus WD40 repeat-containing protein [General	98.31
KOG2315		566	consensus Predicted translation initiation factor	98.3
KOG3881		412	consensus Uncharacterized conserved protein [Funct	98.28
PRK01742		429	tolB translocation protein TolB; Provisional	98.27
KOG2111		346	consensus Uncharacterized conserved protein, conta	98.26
KOG2139		445	consensus WD40 repeat protein [General function pr	98.25
PRK04922		433	tolB translocation protein TolB; Provisional	98.22
PRK11028		330	6-phosphogluconolactonase; Provisional	98.21
KOG1334		559	consensus WD40 repeat protein [General function pr	98.18
KOG0309		1081	consensus Conserved WD40 repeat-containing protein	98.14
KOG4190		1034	consensus Uncharacterized conserved protein [Funct	98.12
PRK05137		435	tolB translocation protein TolB; Provisional	98.1
KOG1064		2439	consensus RAVE (regulator of V-ATPase assembly) co	98.1
KOG0280		339	consensus Uncharacterized conserved protein [Amino	98.07
KOG2139		445	consensus WD40 repeat protein [General function pr	98.05
PRK11028		330	6-phosphogluconolactonase; Provisional	98.04
PRK04922		433	tolB translocation protein TolB; Provisional	98.04
PRK03629		429	tolB translocation protein TolB; Provisional	98.03
KOG2321		703	consensus WD40 repeat protein [General function pr	98.03
PRK05137		435	tolB translocation protein TolB; Provisional	98.02
KOG2111		346	consensus Uncharacterized conserved protein, conta	98.0
KOG1963		792	consensus WD40 repeat protein [General function pr	97.99
PRK03629		429	tolB translocation protein TolB; Provisional	97.99
KOG1963		792	consensus WD40 repeat protein [General function pr	97.94
KOG1409		404	consensus Uncharacterized conserved protein, conta	97.94
PF00400		39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	97.93
KOG2695		425	consensus WD40 repeat protein [General function pr	97.93
PRK02889		427	tolB translocation protein TolB; Provisional	97.92
PRK02889		427	tolB translocation protein TolB; Provisional	97.91
PF00400		39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	97.89
KOG1409		404	consensus Uncharacterized conserved protein, conta	97.88
KOG2321		703	consensus WD40 repeat protein [General function pr	97.82
KOG0280		339	consensus Uncharacterized conserved protein [Amino	97.82
TIGR02800		417	propeller_TolB tol-pal system beta propeller repea	97.8
PF02239		369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	97.78
KOG3914		390	consensus WD repeat protein WDR4 [Function unknown	97.75
TIGR02800		417	propeller_TolB tol-pal system beta propeller repea	97.74
PF02239		369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	97.73
KOG4190		1034	consensus Uncharacterized conserved protein [Funct	97.69
KOG0309		1081	consensus Conserved WD40 repeat-containing protein	97.69
PRK01029		428	tolB translocation protein TolB; Provisional	97.65
KOG2695		425	consensus WD40 repeat protein [General function pr	97.63
KOG1064		2439	consensus RAVE (regulator of V-ATPase assembly) co	97.62
KOG1334		559	consensus WD40 repeat protein [General function pr	97.57
PRK00178		430	tolB translocation protein TolB; Provisional	97.48
PRK01029		428	tolB translocation protein TolB; Provisional	97.44
KOG1912		1062	consensus WD40 repeat protein [General function pr	97.42
TIGR03300		377	assembly_YfgL outer membrane assembly lipoprotein	97.41
PRK00178		430	tolB translocation protein TolB; Provisional	97.38
PRK04792		448	tolB translocation protein TolB; Provisional	97.38
PRK04792		448	tolB translocation protein TolB; Provisional	97.37
KOG3914		390	consensus WD repeat protein WDR4 [Function unknown	97.33
KOG4714		319	consensus Nucleoporin [Nuclear structure]	97.27
PF11768		545	DUF3312: Protein of unknown function (DUF3312); In	97.13
KOG2315		566	consensus Predicted translation initiation factor	97.1
PLN02919		1057	haloacid dehalogenase-like hydrolase family protei	97.03
TIGR03300		377	assembly_YfgL outer membrane assembly lipoprotein	97.02
PLN02919		1057	haloacid dehalogenase-like hydrolase family protei	97.01
KOG4714		319	consensus Nucleoporin [Nuclear structure]	97.0
KOG2041		1189	consensus WD40 repeat protein [General function pr	96.94
KOG1354		433	consensus Serine/threonine protein phosphatase 2A,	96.92
COG4946		668	Uncharacterized protein related to the periplasmic	96.92
KOG0882		558	consensus Cyclophilin-related peptidyl-prolyl cis-	96.85
KOG1275		1118	consensus PAB-dependent poly(A) ribonuclease, subu	96.81
KOG1354		433	consensus Serine/threonine protein phosphatase 2A,	96.73
KOG2066		846	consensus Vacuolar assembly/sorting protein VPS41	96.7
PF13360		238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.67
PF11768		545	DUF3312: Protein of unknown function (DUF3312); In	96.59
PF10282		345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	96.59
KOG4532		344	consensus WD40-like repeat containing protein [Gen	96.54
KOG1832		1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	96.51
KOG1832		1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	96.41
KOG1645		463	consensus RING-finger-containing E3 ubiquitin liga	96.33
KOG4532		344	consensus WD40-like repeat containing protein [Gen	96.3
COG5170		460	CDC55 Serine/threonine protein phosphatase 2A, reg	96.22
KOG1912		1062	consensus WD40 repeat protein [General function pr	96.21
KOG4497		447	consensus Uncharacterized conserved protein WDR8,	96.21
smart00320		40	WD40 WD40 repeats. Note that these repeats are per	96.15
PF04762		928	IKI3: IKI3 family; InterPro: IPR006849 Members of	96.11
smart00320		40	WD40 WD40 repeats. Note that these repeats are per	95.98
PF04762		928	IKI3: IKI3 family; InterPro: IPR006849 Members of	95.96
PF14783		111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	95.92
KOG1008		783	consensus Uncharacterized conserved protein, conta	95.92
KOG1275		1118	consensus PAB-dependent poly(A) ribonuclease, subu	95.87
COG4946		668	Uncharacterized protein related to the periplasmic	95.78
PF13360		238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	95.77
TIGR02658		352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	95.63
COG2706		346	3-carboxymuconate cyclase [Carbohydrate transport	95.59
KOG4497		447	consensus Uncharacterized conserved protein WDR8,	95.55
PF08450		246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	95.5
KOG4640		665	consensus Anaphase-promoting complex (APC), subuni	95.17
PF10282		345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	95.17
COG5170		460	CDC55 Serine/threonine protein phosphatase 2A, reg	95.02
PRK04043		419	tolB translocation protein TolB; Provisional	94.92
KOG1645		463	consensus RING-finger-containing E3 ubiquitin liga	94.66
KOG2114		933	consensus Vacuolar assembly/sorting protein PEP5/V	94.65
PRK11138		394	outer membrane biogenesis protein BamB; Provisiona	94.56
COG2706		346	3-carboxymuconate cyclase [Carbohydrate transport	94.25
PF15492		282	Nbas_N: Neuroblastoma-amplified sequence, N termin	94.25
PRK04043		419	tolB translocation protein TolB; Provisional	94.25
KOG2041		1189	consensus WD40 repeat protein [General function pr	94.19
KOG2114		933	consensus Vacuolar assembly/sorting protein PEP5/V	93.97
KOG2314		698	consensus Translation initiation factor 3, subunit	93.55
COG5354		561	Uncharacterized protein, contains Trp-Asp (WD) rep	93.27
KOG2066		846	consensus Vacuolar assembly/sorting protein VPS41	93.27
TIGR02658		352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	93.18
KOG4640		665	consensus Anaphase-promoting complex (APC), subuni	93.1
KOG2314		698	consensus Translation initiation factor 3, subunit	92.73
PF15492		282	Nbas_N: Neuroblastoma-amplified sequence, N termin	92.72
PF08553		794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	92.72
KOG0882		558	consensus Cyclophilin-related peptidyl-prolyl cis-	92.72
KOG3617		1416	consensus WD40 and TPR repeat-containing protein [	91.93
PRK11138		394	outer membrane biogenesis protein BamB; Provisiona	91.81
COG5354		561	Uncharacterized protein, contains Trp-Asp (WD) rep	91.64
KOG3617		1416	consensus WD40 and TPR repeat-containing protein [	90.84
PF07433		305	DUF1513: Protein of unknown function (DUF1513); In	90.82
PF08596		395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	90.0
KOG4649		354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	89.55
PF08450		246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	88.57
KOG2444		238	consensus WD40 repeat protein [General function pr	87.38
KOG2444		238	consensus WD40 repeat protein [General function pr	87.11
KOG1920		1265	consensus IkappaB kinase complex, IKAP component [	86.67
PF08596		395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	86.36
KOG2079		1206	consensus Vacuolar assembly/sorting protein VPS8 [	86.06
PF04053		443	Coatomer_WDAD: Coatomer WD associated region ; Int	85.85
KOG3621		726	consensus WD40 repeat-containing protein [General	85.72
KOG1916		1283	consensus Nuclear protein, contains WD40 repeats [	84.85
KOG4649		354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	84.07
PF14783		111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	84.05
KOG1920		1265	consensus IkappaB kinase complex, IKAP component [	84.05
PRK02888		635	nitrous-oxide reductase; Validated	82.73
KOG2395		644	consensus Protein involved in vacuole import and d	82.65
KOG1008		783	consensus Uncharacterized conserved protein, conta	82.38
PF02897		414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	81.54
KOG1916		1283	consensus Nuclear protein, contains WD40 repeats [	80.81

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]	Back alignment and domain information

Probab=99.95  E-value=1.2e-27  Score=269.96  Aligned_cols=278  Identities=17%  Similarity=0.215  Sum_probs=215.8

Q ss_pred             CCCCceeEEEEEeeeeeEEEEeeeeccCCCccccceEEEEEecccCCCCCceeEEeecCCee--eeeeec---c-eeeeC
Q 000743          213 PSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSF--VDWVNN---S-TFLDE  286 (1313)
Q Consensus       213 ~~~~~~~i~~iq~~~~lv~i~svc~d~e~~l~W~p~vtVWsl~~~~~~~~~q~~~~g~~~~~--~dWiss---~-l~~~~  286 (1313)
                      +.+....+.++-|......+.+.+        |...+++|....+    ...+++.|+...+  ++|-..   . +....
T Consensus       171 Q~gd~rPis~~~fS~ds~~laT~s--------wsG~~kvW~~~~~----~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s  238 (459)
T KOG0272|consen  171 QVGDTRPISGCSFSRDSKHLATGS--------WSGLVKVWSVPQC----NLLQTLRGHTSRVGAAVFHPVDSDLNLATAS  238 (459)
T ss_pred             hccCCCcceeeEeecCCCeEEEee--------cCCceeEeecCCc----ceeEEEeccccceeeEEEccCCCccceeeec
Confidence            334444566666666544444443        5568999977544    2345677766544  344211   1 22222


Q ss_pred             CCC-eeeeeeccccccccccccccccCCCCCCCceecccCCceEEEEeeeecccccCCE--EEEEEcCCcEEEEEeeccc
Q 000743          287 NEG-SCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYA--IVYGFFSGEIEVIQFDLFE  363 (1313)
Q Consensus       287 ~dG-i~Iwk~~~ss~~~~i~~l~~~~~~~~~~~~~~~~~H~~~Vts~l~is~~~fsP~~--LvsGs~DGsI~I~~wdll~  363 (1313)
                      .|| +++|++..+                  .+++.+.+|...|..      +.|+|++  |.+++.|.+=++  |    
T Consensus       239 ~Dgtvklw~~~~e------------------~~l~~l~gH~~RVs~------VafHPsG~~L~TasfD~tWRl--W----  288 (459)
T KOG0272|consen  239 ADGTVKLWKLSQE------------------TPLQDLEGHLARVSR------VAFHPSGKFLGTASFDSTWRL--W----  288 (459)
T ss_pred             cCCceeeeccCCC------------------cchhhhhcchhhhee------eeecCCCceeeecccccchhh--c----
Confidence            233 344544322                  358899999999999      6777774  899999988777  4    


Q ss_pred             cCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEE
Q 000743          364 RHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQ  443 (1313)
Q Consensus       364 ~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~s  443 (1313)
                               |+.++.......||...|.+++|+     +||    .+++|||.|..-||||+++|.++..+.+|..+|.+
T Consensus       289 ---------D~~tk~ElL~QEGHs~~v~~iaf~-----~DG----SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~  350 (459)
T KOG0272|consen  289 ---------DLETKSELLLQEGHSKGVFSIAFQ-----PDG----SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILS  350 (459)
T ss_pred             ---------ccccchhhHhhcccccccceeEec-----CCC----ceeeccCccchhheeecccCcEEEEecccccceee
Confidence                     556777777889999999999999     577    99999999999999999999999999999999999


Q ss_pred             EEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcC-CCCEEEEEecCCCCCCCCCCEEEEEE
Q 000743          444 IILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC-PRGYIACLCRDHSRTSDAVDVLFIWD  522 (1313)
Q Consensus       444 V~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsP-dg~~Latgs~DlsGssD~DgtIrVWD  522 (1313)
                      |.|+|+      |..++|||.|++++|||++..++++++++|.+-|+.|+|+| .|.+|+|++.|        ++++||.
T Consensus       351 V~fsPN------Gy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD--------~t~kiWs  416 (459)
T KOG0272|consen  351 VAFSPN------GYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYD--------NTVKIWS  416 (459)
T ss_pred             EeECCC------ceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccC--------cceeeec
Confidence            999999      79999999999999999999999999999999999999999 77889987766        9999999


Q ss_pred             CCCCcEEEEEeCCCCceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEEe
Q 000743          523 VKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ  581 (1313)
Q Consensus       523 lrTG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wd  581 (1313)
                      .+++.+++++.||.+.|+++.....            +++.     ++.+-|+|+|+|.
T Consensus       417 ~~~~~~~ksLaGHe~kV~s~Dis~d------------~~~i-----~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  417 TRTWSPLKSLAGHEGKVISLDISPD------------SQAI-----ATSSFDRTIKLWR  458 (459)
T ss_pred             CCCcccchhhcCCccceEEEEeccC------------CceE-----EEeccCceeeecc
Confidence            9999999999999999977654321            1222     3334499999995

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]	Back alignment and domain information

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]	Back alignment and domain information

>KOG0286 consensus G-protein beta subunit [General function prediction only]	Back alignment and domain information

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]	Back alignment and domain information

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]	Back alignment and domain information

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]	Back alignment and domain information

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]	Back alignment and domain information

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]	Back alignment and domain information

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]	Back alignment and domain information

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]	Back alignment and domain information

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]	Back alignment and domain information

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]	Back alignment and domain information

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]	Back alignment and domain information

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]	Back alignment and domain information

>KOG0286 consensus G-protein beta subunit [General function prediction only]	Back alignment and domain information

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]	Back alignment and domain information

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]	Back alignment and domain information

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]	Back alignment and domain information

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]	Back alignment and domain information

>PTZ00421 coronin; Provisional	Back alignment and domain information

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]	Back alignment and domain information

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]	Back alignment and domain information

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]	Back alignment and domain information

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]	Back alignment and domain information

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]	Back alignment and domain information

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]	Back alignment and domain information

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]	Back alignment and domain information

>KOG0645 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>PTZ00421 coronin; Provisional	Back alignment and domain information

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]	Back alignment and domain information

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]	Back alignment and domain information

>PTZ00420 coronin; Provisional	Back alignment and domain information

>PTZ00420 coronin; Provisional	Back alignment and domain information

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Back alignment and domain information

>KOG0282 consensus mRNA splicing factor [Function unknown]	Back alignment and domain information

Back alignment and domain information

>PLN00181 protein SPA1-RELATED; Provisional	Back alignment and domain information

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]	Back alignment and domain information

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]	Back alignment and domain information

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]	Back alignment and domain information

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>PLN00181 protein SPA1-RELATED; Provisional	Back alignment and domain information

>KOG0645 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]	Back alignment and domain information

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]	Back alignment and domain information

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]	Back alignment and domain information

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]	Back alignment and domain information

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0282 consensus mRNA splicing factor [Function unknown]	Back alignment and domain information

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]	Back alignment and domain information

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]	Back alignment and domain information

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]	Back alignment and domain information

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]	Back alignment and domain information

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]	Back alignment and domain information

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0641 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]	Back alignment and domain information

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]	Back alignment and domain information

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]	Back alignment and domain information

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0289 consensus mRNA splicing factor [General function prediction only]	Back alignment and domain information

>KOG1408 consensus WD40 repeat protein [Function unknown]	Back alignment and domain information

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]	Back alignment and domain information

>KOG0641 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]	Back alignment and domain information

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0289 consensus mRNA splicing factor [General function prediction only]	Back alignment and domain information

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1539 consensus WD repeat protein [General function prediction only]	Back alignment and domain information

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0646 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0646 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]	Back alignment and domain information

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]	Back alignment and domain information

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]	Back alignment and domain information

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]	Back alignment and domain information

>KOG1407 consensus WD40 repeat protein [Function unknown]	Back alignment and domain information

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]	Back alignment and domain information

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]	Back alignment and domain information

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]	Back alignment and domain information

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]	Back alignment and domain information

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]	Back alignment and domain information

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]	Back alignment and domain information

>KOG2096 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]	Back alignment and domain information

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1407 consensus WD40 repeat protein [Function unknown]	Back alignment and domain information

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]	Back alignment and domain information

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]	Back alignment and domain information

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]	Back alignment and domain information

>KOG1273 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]	Back alignment and domain information

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]	Back alignment and domain information

>KOG1274 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]	Back alignment and domain information

>KOG1274 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG2048 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0649 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]	Back alignment and domain information

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]	Back alignment and domain information

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]	Back alignment and domain information

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]	Back alignment and domain information

>KOG1408 consensus WD40 repeat protein [Function unknown]	Back alignment and domain information

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]	Back alignment and domain information

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]	Back alignment and domain information

>KOG0649 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]	Back alignment and domain information

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein	Back alignment and domain information

>KOG4328 consensus WD40 protein [Function unknown]	Back alignment and domain information

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]	Back alignment and domain information

>KOG2048 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG1539 consensus WD repeat protein [General function prediction only]	Back alignment and domain information

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]	Back alignment and domain information

>COG2319 FOG: WD40 repeat [General function prediction only]	Back alignment and domain information

>COG2319 FOG: WD40 repeat [General function prediction only]	Back alignment and domain information

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]	Back alignment and domain information

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]	Back alignment and domain information

>KOG1188 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]	Back alignment and domain information

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG4328 consensus WD40 protein [Function unknown]	Back alignment and domain information

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1273 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]	Back alignment and domain information

>KOG2096 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]	Back alignment and domain information

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein	Back alignment and domain information

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]	Back alignment and domain information

>KOG1310 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]	Back alignment and domain information

>KOG1310 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]	Back alignment and domain information

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]	Back alignment and domain information

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]	Back alignment and domain information

>KOG1188 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]	Back alignment and domain information

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins	Back alignment and domain information

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]	Back alignment and domain information

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]	Back alignment and domain information

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]	Back alignment and domain information

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]	Back alignment and domain information

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]	Back alignment and domain information

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]	Back alignment and domain information

>KOG4227 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG2055 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG2055 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]	Back alignment and domain information

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]	Back alignment and domain information

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]	Back alignment and domain information

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]	Back alignment and domain information

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]	Back alignment and domain information

>KOG4227 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins	Back alignment and domain information

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]	Back alignment and domain information

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]	Back alignment and domain information

>PRK01742 tolB translocation protein TolB; Provisional	Back alignment and domain information

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]	Back alignment and domain information

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK01742 tolB translocation protein TolB; Provisional	Back alignment and domain information

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]	Back alignment and domain information

>KOG2139 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>PRK04922 tolB translocation protein TolB; Provisional	Back alignment and domain information

>PRK11028 6-phosphogluconolactonase; Provisional	Back alignment and domain information

>KOG1334 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK05137 tolB translocation protein TolB; Provisional	Back alignment and domain information

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]	Back alignment and domain information

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]	Back alignment and domain information

>KOG2139 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>PRK11028 6-phosphogluconolactonase; Provisional	Back alignment and domain information

>PRK04922 tolB translocation protein TolB; Provisional	Back alignment and domain information

>PRK03629 tolB translocation protein TolB; Provisional	Back alignment and domain information

>KOG2321 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>PRK05137 tolB translocation protein TolB; Provisional	Back alignment and domain information

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]	Back alignment and domain information

>KOG1963 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>PRK03629 tolB translocation protein TolB; Provisional	Back alignment and domain information

>KOG1963 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]	Back alignment and domain information

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide	Back alignment and domain information

>KOG2695 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>PRK02889 tolB translocation protein TolB; Provisional	Back alignment and domain information

>PRK02889 tolB translocation protein TolB; Provisional	Back alignment and domain information

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide	Back alignment and domain information

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]	Back alignment and domain information

>KOG2321 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB	Back alignment and domain information

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A	Back alignment and domain information

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]	Back alignment and domain information

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB	Back alignment and domain information

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A	Back alignment and domain information

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>PRK01029 tolB translocation protein TolB; Provisional	Back alignment and domain information

>KOG2695 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]	Back alignment and domain information

>KOG1334 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>PRK00178 tolB translocation protein TolB; Provisional	Back alignment and domain information

>PRK01029 tolB translocation protein TolB; Provisional	Back alignment and domain information

>KOG1912 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL	Back alignment and domain information

>PRK00178 tolB translocation protein TolB; Provisional	Back alignment and domain information

>PRK04792 tolB translocation protein TolB; Provisional	Back alignment and domain information

>PRK04792 tolB translocation protein TolB; Provisional	Back alignment and domain information

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]	Back alignment and domain information

>KOG4714 consensus Nucleoporin [Nuclear structure]	Back alignment and domain information

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats	Back alignment and domain information

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PLN02919 haloacid dehalogenase-like hydrolase family protein	Back alignment and domain information

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL	Back alignment and domain information

>PLN02919 haloacid dehalogenase-like hydrolase family protein	Back alignment and domain information

>KOG4714 consensus Nucleoporin [Nuclear structure]	Back alignment and domain information

>KOG2041 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]	Back alignment and domain information

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]	Back alignment and domain information

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]	Back alignment and domain information

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]	Back alignment and domain information

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A	Back alignment and domain information

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats	Back alignment and domain information

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3	Back alignment and domain information

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]	Back alignment and domain information

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]	Back alignment and domain information

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]	Back alignment and domain information

>KOG1912 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]	Back alignment and domain information

>smart00320 WD40 WD40 repeats	Back alignment and domain information

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []	Back alignment and domain information

>smart00320 WD40 WD40 repeats	Back alignment and domain information

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []	Back alignment and domain information

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region	Back alignment and domain information

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]	Back alignment and domain information

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]	Back alignment and domain information

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]	Back alignment and domain information

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A	Back alignment and domain information

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain	Back alignment and domain information

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]	Back alignment and domain information

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]	Back alignment and domain information

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species	Back alignment and domain information

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3	Back alignment and domain information

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]	Back alignment and domain information

>PRK04043 tolB translocation protein TolB; Provisional	Back alignment and domain information

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK11138 outer membrane biogenesis protein BamB; Provisional	Back alignment and domain information

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal	Back alignment and domain information

>PRK04043 tolB translocation protein TolB; Provisional	Back alignment and domain information

>KOG2041 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]	Back alignment and domain information

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain	Back alignment and domain information

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal	Back alignment and domain information

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins	Back alignment and domain information

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]	Back alignment and domain information

>PRK11138 outer membrane biogenesis protein BamB; Provisional	Back alignment and domain information

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]	Back alignment and domain information

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]	Back alignment and domain information

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function	Back alignment and domain information

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals	Back alignment and domain information

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species	Back alignment and domain information

>KOG2444 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG2444 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]	Back alignment and domain information

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals	Back alignment and domain information

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]	Back alignment and domain information

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region	Back alignment and domain information

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]	Back alignment and domain information

>PRK02888 nitrous-oxide reductase; Validated	Back alignment and domain information

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]	Back alignment and domain information

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1313
1p22_A		435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-05
2ovp_B		445	Structure Of The Skp1-Fbw7 Complex Length = 445		3e-05
3ow8_A		321	Crystal Structure Of The Wd Repeat-Containing Prote		6e-04

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Back alignment and structure

Iteration: 1

Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 86/195 (44%), Gaps = 56/195 (28%) Query: 375 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNE-VLVSGSMDCSIRIWDLGSGNLITV 433 N+ ++ GHTG+VLCL ++E V+++GS D ++R+WD+ +G ++ Sbjct: 161 NTLECKRILTGHTGSVLCL------------QYDERVIITGSSDSTVRVWDVNTGEMLNT 208 Query: 434 MHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVA---LASLETLRVERMFPGHP---- 486 + HH V + + + ++ +D S+A +AS + + R+ GH Sbjct: 209 LIHHCEAVLHLRFN--------NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 260 Query: 487 --NYPAKV-----------VWDC------------PRGYIACL-CRDHSRTSDAVD-VLF 519 ++ K VW+ RG IACL RD S + D + Sbjct: 261 VVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG-IACLQYRDRLVVSGSSDNTIR 319 Query: 520 IWDVKTGARERVLRG 534 +WD++ GA RVL G Sbjct: 320 LWDIECGACLRVLEG 334

PyMOL of 1p22

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Back alignment and structure

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1313
d1vyhc1		317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-09
d1vyhc1		317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-09
d1vyhc1		317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-07
d1tbga_		340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-07
d1tbga_		340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-06
d1erja_		388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-07
d1erja_		388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-06
d1erja_		388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-06
d1nexb2		355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-07
d2ovrb2		342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-06
d2ovrb2		342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-04
d1nr0a2		299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-06
d1p22a2		293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-06
d1p22a2		293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.001
d1p22a2		293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.002
d1sq9a_		393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-05
d1pgua2		287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-04
d1pgua2		287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.003
d1gxra_		337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-04
d1yfqa_		342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-04
d1pgua1		325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.002
d1nr0a1		311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.003
d1k8kc_		371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.003

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317	Back information, alignment and structure


class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.0 bits (141), Expect = 1e-09
 Identities = 27/159 (16%), Positives = 57/159 (35%), Gaps = 14/159 (8%)

Query: 364 RHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 423
                 A L+ + HV          +   ++      T K       L+SGS D +I++W
Sbjct: 173 ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 232

Query: 424 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP 483
           D+ +G  +  +  H   VR ++       H      LS  +D ++ +   +  R  +   
Sbjct: 233 DVSTGMCLMTLVGHDNWVRGVLF------HSGGKFILSCADDKTLRVWDYKNKRCMKTLN 286

Query: 484 GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 522
            H ++   + +     Y+     D +        + +W+
Sbjct: 287 AHEHFVTSLDFHKTAPYVVTGSVDQT--------VKVWE 317

PyMOL of d1vyhc1

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317	Back information, alignment and structure

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317	Back information, alignment and structure

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340	Back information, alignment and structure

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340	Back information, alignment and structure

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388	Back information, alignment and structure

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388	Back information, alignment and structure

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388	Back information, alignment and structure

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355	Back information, alignment and structure

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342	Back information, alignment and structure

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342	Back information, alignment and structure

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299	Back information, alignment and structure

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293	Back information, alignment and structure

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293	Back information, alignment and structure

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293	Back information, alignment and structure

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393	Back information, alignment and structure

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287	Back information, alignment and structure

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287	Back information, alignment and structure

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337	Back information, alignment and structure

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342	Back information, alignment and structure

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325	Back information, alignment and structure

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311	Back information, alignment and structure

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1313
d1tbga_		340	beta1-subunit of the signal-transducing G protein	99.97
d1nr0a1		311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1erja_		388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1gxra_		337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.96
d1vyhc1		317	Platelet-activating factor acetylhydrolase IB subu	99.96
d1sq9a_		393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1tbga_		340	beta1-subunit of the signal-transducing G protein	99.95
d1gxra_		337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.95
d1nr0a1		311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.94
d1pgua1		325	Actin interacting protein 1 {Baker's yeast (Saccha	99.94
d1k8kc_		371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.94
d1k8kc_		371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.94
d1nexb2		355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.93
d1vyhc1		317	Platelet-activating factor acetylhydrolase IB subu	99.93
d2ovrb2		342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.93
d1erja_		388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.92
d1nr0a2		299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.92
d1nexb2		355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.92
d1pgua1		325	Actin interacting protein 1 {Baker's yeast (Saccha	99.92
d1sq9a_		393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.91
d2ovrb2		342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.91
d1p22a2		293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.89
d1nr0a2		299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.89
d1pgua2		287	Actin interacting protein 1 {Baker's yeast (Saccha	99.89
d1p22a2		293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.89
d1pgua2		287	Actin interacting protein 1 {Baker's yeast (Saccha	99.85
d1yfqa_		342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.83
d1yfqa_		342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.74
d1k32a3		360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.74
d1k32a3		360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.7
d1hzua2		426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.7
d1qksa2		432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.59
d1hzua2		426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.57
d1l0qa2		301	Surface layer protein {Archaeon Methanosarcina maz	99.54
d1qksa2		432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.53
d1pbyb_		337	Quinohemoprotein amine dehydrogenase B chain {Para	99.51
d1l0qa2		301	Surface layer protein {Archaeon Methanosarcina maz	99.47
d1jmxb_		346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.43
d1pbyb_		337	Quinohemoprotein amine dehydrogenase B chain {Para	99.37
d2madh_		373	Methylamine dehydrogenase, H-chain {Gram negative	99.17
d1jmxb_		346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.11
d1ri6a_		333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.09
d1ri6a_		333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.04
d2madh_		373	Methylamine dehydrogenase, H-chain {Gram negative	98.98
d2bbkh_		355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.95
d2bbkh_		355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.82
d1mdah_		368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.63
d2bgra1		470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.63
d1mdah_		368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.62
d2bgra1		470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.53
d1qnia2		441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.48
d1qnia2		441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.11
d1jofa_		365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.34
d2p4oa1		302	Hypothetical protein All0351 homologue {Nostoc pun	96.96
d1rwia_		260	Serine/threonine-protein kinase PknD {Mycobacteriu	96.14
d1q7fa_		279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	95.81
d2hqsa1		269	TolB, C-terminal domain {Escherichia coli [TaxId:	94.69
d1rwia_		260	Serine/threonine-protein kinase PknD {Mycobacteriu	94.33
d1q7fa_		279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	94.23
d2p4oa1		302	Hypothetical protein All0351 homologue {Nostoc pun	94.22
d1jofa_		365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	93.19
d1pjxa_		314	Diisopropylfluorophosphatase (phosphotriesterase,	92.37
d2dg1a1		319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	92.21
d1xfda1		465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	92.13
d1xfda1		465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	89.67
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	81.71
d2ghsa1		295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	81.69

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=1.6e-26  Score=187.23  Aligned_cols=183  Identities=20%  Similarity=0.250  Sum_probs=141.4

Q ss_pred             EEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEE
Q ss_conf             89999969939999930465579999853458750789983478668999981046688787668599999589939999
Q 000743          344 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW  423 (1313)
Q Consensus       344 ~Lv~Gs~DGsI~I~~wdll~~~~~~~~~wdv~s~~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LvSGS~DgtIrIW  423 (1313)
                      .+.....++....+..               ...........+...+....+.+     ++    .++++|+.|++|++|
T Consensus       156 ~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~~d~~v~i~  211 (340)
T d1tbga_         156 QIVTSSGDTTCALWDI---------------ETGQQTTTFTGHTGDVMSLSLAP-----DT----RLFVSGACDASAKLW  211 (340)
T ss_dssp             EEEEEETTTEEEEEET---------------TTTEEEEEEECCSSCEEEEEECT-----TS----SEEEEEETTTEEEEE
T ss_pred             CCCCCCCCCCCCCCCC---------------CCCCCCCCCCCCCEEEEEECCCC-----CC----CEEEEEECCCEEEEE
T ss_conf             1111124454320012---------------32211111233101576300124-----42----126876057369999


Q ss_pred             ECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEC--CCCCCCEEEEECCCCCEE
Q ss_conf             799994599970168778999989999999999889999489809999789982779942--799993899994999999
Q 000743          424 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP--GHPNYPAKVVWDCPRGYI  501 (1313)
Q Consensus       424 Dl~tg~~l~tl~gH~~~V~sI~fsPd~~~~~~g~~IvSgS~DgtV~LWDL~t~~~l~~l~--gH~~~V~~IafsPdg~~L  501 (1313)
                      |+++++++.++.+|.++|++++|+|+      ++++++++.|+.|++|+++.......+.  .+...+.+++|+|++.++
T Consensus       212 d~~~~~~~~~~~~h~~~i~~v~~~p~------~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  285 (340)
T d1tbga_         212 DVREGMCRQTFTGHESDINAICFFPN------GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL  285 (340)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEE
T ss_pred             ECCCCCEEEEEECCCCCEEEEEECCC------CCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEE
T ss_conf             99999488999578898589999799------899999969996999752122111111122445745899998999999


Q ss_pred             EEEECCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             99852798777999879999799991899981889864577662166652011231048821246864534898279883
Q 000743          502 ACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ  581 (1313)
Q Consensus       502 isgs~DlsgssD~DgtIrIWDlrTg~lvr~L~GH~a~Vi~~~~c~~~s~~~vSGS~l~g~~~~S~~lvsvs~D~tir~Wd  581 (1313)
                      ++|+.|        |+|++||+++++++.++.||.+.|..+.|++. ...+++|+.                |+++++||
T Consensus       286 ~~g~~d--------g~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d-~~~l~s~s~----------------Dg~v~iWd  340 (340)
T d1tbga_         286 LAGYDD--------FNCNVWDALKADRAGVLAGHDNRVSCLGVTDD-GMAVATGSW----------------DSFLKIWN  340 (340)
T ss_dssp             EEEETT--------SCEEEEETTTCCEEEEECCCSSCEEEEEECTT-SSCEEEEET----------------TSCEEEEC
T ss_pred             EEEECC--------CEEEEEECCCCCEEEEECCCCCCEEEEEEECC-CCEEEEECC----------------CCEEEEEC
T ss_conf             999797--------98999999999398998489997899999089-999999906----------------99799859

PyMOL of d1tbga_

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}	Back information, alignment and structure

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}	Back information, alignment and structure

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}	Back information, alignment and structure

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}	Back information, alignment and structure

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}	Back information, alignment and structure

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}	Back information, alignment and structure

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}	Back information, alignment and structure

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}	Back information, alignment and structure

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}	Back information, alignment and structure

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}	Back information, alignment and structure

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}	Back information, alignment and structure

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}	Back information, alignment and structure

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}	Back information, alignment and structure

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}	Back information, alignment and structure

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}	Back information, alignment and structure

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}	Back information, alignment and structure

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}	Back information, alignment and structure

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}	Back information, alignment and structure

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}	Back information, alignment and structure

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}	Back information, alignment and structure

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}	Back information, alignment and structure

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}	Back information, alignment and structure

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}	Back information, alignment and structure

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}	Back information, alignment and structure