Citrus Sinensis ID: 000745

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------
MPKEDSMLVGDFGGHDKSNEVQLKEDFATPASTVIDGCQGDIGRSHKKLSGRRKKRKAVDDINSVTKPVLRRSTRRGSARYKDLSSKISCEVNDAMADVSMEELPATLDAGRIEEPVVNPPKLLLPPSSRNLDLDGIPVLDLFSIYACLRSFSTLLFLSPFELEDFVAALKCSSPNLLFDSVHVSILRILRKHLEHLSKEGCESASDCLRSLNWGLLDLITWPIFMAEYFLIHNSGLKPGFELTRLKLFSSEYCKQPVSVKIEILRCLCDDMIEVEAIRMELNRRSSVAEPEMDFDRNINNEIGKRRRVAMDISAGSCLTEEVVDDANDWNSDECCLCKMDGSLLCCDGCPAAYHSKCVGVANVPEGDWFCPECALDRHKPWMKPRKSLRGAELLGVDPHGRLYFCSCGYLLVSDSCDTELILNYYCRDDLNFVIDVLKSSDTFYGGIINAICKQWDITVSSNGVRSNLALNTVSLSRHMKAEVPTISEIDNEQKLEENFLAGYSNRPDNALSKSANLLDSVTAMELPNISSEGSAETTQMNSGFDNFQKEGPDNSIRAAEFSNQSEIAGKLPAPGHNSMTSSTSDIKQKFASSGCNSSPTNSRKGDALQLQPEIAYMNRYSFAQTASSVAEELMHKSSNEISKEPINSNEEIISKQMKAILKKWDKFYWPNTQKLNADTQKEKCGWCFSCKSATDDMDCLFYMNNGRVLGSSESEVAGLLSKRNKKGHLVDVICHILSIEDRLLGLLLGPWLNPHYTKLWRKSALKAADMASVKHLLLTLEANLQHLALSAEWFKHVDPVVTVGSASHIVIASSRANSKAGAGRKKARDFDGNPSTKAAGGLSLCWWRGGRLSCQLFSWKRLPRSLVSKAARQAGCMKIPGILYPENSDFARRSRTVAWRAAVESSTSVEQLAIQVREFDSNVRWDDIENTHPLCTMDKEFRKSVRLFKKAIIRRKCLKEEGVKYLVDFGKRRSVPDIVIRHGSMAEESSSGRKKYWLNESYVPLHLLKSFEERRVARKSPKLSSGKLSEPFRVIKKSLRDRGFSYLFSKAARSEYYQCGHCSKDVLIRDAVCCQDCKDNYGVSGYFHKRHIRKSAGAVTTECKYTCYQCQDGRFKKDTRTAKNGTKKGKMNTRSVKVKSQKSKKTTGRRSVQSKNSKKTVVGGRSLRSRNDKKVAAIPLRRSARRAKLVSVQNRKHAGRKRGRPKSKKKTSRKPKKTTSLQKKRTQSYYSYWLNGLFLSRKPDDDRVMQFTRKNFLAASELLTDTLDQPKCYLCHEAEHTSTSNYIACEICGGNKFSMSLSSDT
ccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccEEEcccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccEEccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccEEEEEccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHccccccccccccccccHHHHHcccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcccEEccccccHHccccccccccccccccccccccccccccccccccccccccccccEEEcccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHccHHHHcccccEEEEEccccEEEccccccccccccccccccccccccccccccccEEEEccccccccccccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHccEEEEEcccccccEEEEEEcccccccccEEEEccccccccccccccEEEEcccccHHHHHHHHHHHccccccccccccccccHHHHHccccccHHHHHHHccccccccccccccccccccccEEccccccccccccccccccccccccccccEEEEEEcHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccEEEcccccccccccccccccccccccccccEEEEcccccccccccccccc
cccccEEEEEEEcccccccccccccccccccHEEEccccccccccccccccccEEEEHcccccccccccEEccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccccHHHcccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccEEEccccccccccccEEEcccccccccccccccccccccccccEEEcccccEEEccccccEEEEEEccccccccccccccEEEEccccHHHHccccccccccccccccccEEEEEEEEEEEEEcccccEEEEEccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHccHHHHHHHHHHHHHHHHHHcccccccccHHHHHcHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHcHHHccHHHHHHHHHHcccccHHHHcHHHEEcccHHHHccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccHEEEcHHHHHccccccEEccHHEEEcccccccccccccccccccccccccccccccccEEEEcccHHHHHHHHHccccHHHHHHHHHHccccccccEEccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccEcHHHccccccccccccccHHHHHHHHEEEEEEcEEccccEEEEEEcccccccccEEEEcEEEEEcccccccEEEEccccccHHHHHHHHHHcccccccccccccHHHHHHHHccccHccHHHHHHHHHccccccccccccccEEEcccEEcHHccccccccccccccccEcccccccccEEEEEHHcHcHHHcccccccccccccccccccccEcccccccccccEEEcccccccccccccEEEEcccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccHEEEEHHccEEEEEcccccccHHHHHccEEEEcccccccccccccccHccccccccEEEEEEEcccccEEEEEEEccc
mpkedsmlvgdfgghdksnevqlkedfatpastvidgcqgdigrshkklsgrrkkrkavddinsvtkpvlrrstrrgsarykdlsSKISCEVNDAMADVSMeelpatldagrieepvvnppklllppssrnldldgipvldLFSIYACLRSFstllflspfELEDFVAALkcsspnllfdsVHVSILRILRKHLEHLSKEGCESASDCLRSLNWGLLDLITWPIFMAEYFLIhnsglkpgfeltrlklfsseyckqpvsVKIEILRCLCDDMIEVEAIRMELnrrssvaepemdfdrninneigkRRRVamdisagsclteevvddandwnsdecclckmdgsllccdgcpaayhskcvgvanvpegdwfcpecaldrhkpwmkprkslrgaellgvdphgrlyfcscgyllvsdscdtELILNYYCRDDLNFVIDVLKSSDTFYGGIINAICKQWditvssngvrsnLALNTVSLSRhmkaevptiseidnEQKLEENFLagysnrpdnalsksanlldsvtamelpnissegsaettqmnsgfdnfqkegpdnsiraaefsnqseiagklpapghnsmtsstsDIKQkfassgcnssptnsrkgdalqlqpeiaymnrysfAQTASSVAEELMHKssneiskepinsnEEIISKQMKAILKKWDkfywpntqklnadtqkekcgwcfscksatddmdclfymnngrvlgssESEVAGLLSkrnkkghlVDVICHILSIEDRLLGlllgpwlnphytKLWRKSALKAADMASVKHLLLTLEANLQHLALSAewfkhvdpvvtvGSASHIVIASsranskagagrkkardfdgnpstkaagglslcwwrggrlscqlfswkrlprsLVSKAARQAgcmkipgilypensdfaRRSRTVAWRAAVESSTSVEQLAIQVREfdsnvrwddienthplctmdkEFRKSVRLFKKAIIRRKCLKEEGVKYLVDfgkrrsvpdivirhgsmaeesssgrkkywlnesyvplhlLKSFEERRvarkspklssgklsepFRVIKKSLRDRGFSYLFSKAARSeyyqcghcskdvlirdavccqdckdnygvsgyfhkrhirksagavtteckytcyqcqdgrfkkdtrtakngtkkgkmntrsvkvksqkskkttgrrsvqsknskktvvggrslrsrndkkvaaipLRRSARRAKLVSVQNRkhagrkrgrpkskkktsrkpkkttslqkkrtQSYYSYWLNGlflsrkpdddrvMQFTRKNFLAASELLtdtldqpkcylcheaehtstsnyiaceicggnkfsmslssdt
mpkedsmlvgdfgghdksnEVQLKEDFATpastvidgcqgdigrshkklsgrrkkrkavddinsvtkpvlrrstrrgsarykdlsskiscEVNDAMADVSMEELPATLdagrieepvvnppKLLLPPSSRNLDLDGIPVLDLFSIYACLRSFSTLLFLSPFELEDFVAALKCSSPNLLFDSVHVSILRILRKHLEHLSKEGCESASDCLRSLNWGLLDLITWPIFMAEYFLIHNSGLKPGFELTRLKLFSSEYCKQPVSVKIEILRCLCDDMIEVEAIRMELnrrssvaepemdfdrninneigkrrrvAMDISAGSCLTEEVVDDANDWNSDECCLCKMDGSLLCCDGCPAAYHSKCVGVANVPEGDWFCPECALDRHKPWMKPRKSLRGAELLGVDPHGRLYFCSCGYLLVSDSCDTELILNYYCRDDLNFVIDVLKSSDTFYGGIINAICKQWDITVSSNGVRSNLALNTVSLSRHMKAevptiseidneQKLEENFLAGYSNRPDNALSKSANLLDSVTAMELPNISSEGSAETTQMNSGFDNFQKEGPDNSIRAAEFSNQSEIAGKLPAPGHNSMTSSTSDIKQKFASsgcnssptnsrkgdALQLQPEIAYMNRYSFAQTASSVAEELMHKSsneiskepinsneEIISKQMKAILKKWDKFYWPNTQKlnadtqkekCGWCFSCKSATDDMDCLFYMNNGRVLGSSESEVAGLLSKRNKKGHLVDVICHILSIEDRLLGLLLGPWLNPHYTKLWRKSALKAADMASVKHLLLTLEANLQHLALSAEWFKHVDPVVTVGSASHIVIassranskagagrkkardfdgnpstkaagglslcwwRGGRLSCQLFSWKRLPRSLVSKAArqagcmkipgilypensDFARRSRTVAWRAAvesstsveqLAIQVrefdsnvrwddienthplctmdkefrKSVRLFKKAiirrkclkeegvkylvdfgkrrsvpdivirhgsmaeesssgrkkyWLNESYVPLHLLKSFEERRVarkspklssgklsepfrviKKSLRDRGFSYLFSKAARSEYYQCGHCSKDVLIRDAVCCQDCKDNYGVSGYFHKRHIRKSAGAVTTECKYtcyqcqdgrfkkdtrtakngtkkgkmntrsvkvksqkskkttgrrsvqsknskktvvggrslrsrndkkvaaiplrrsarraklvsvqnrkhagrkrgrpkskkktsrkpkkttslqkkrtqsyYSYWLNGLFLSRKPDDDRVMQFTRKNFLAASELLTDTLDQPKCYLCHEAEHTSTSNYIACEICGGNKFSMSLSSDT
MPKEDSMLVGDFGGHDKSNEVQLKEDFATPASTVIDGCQGDIGRSHKKLSGRRKKRKAVDDINSVTKPVLRRSTRRGSARYKDLSSKISCEVNDAMADVSMEELPATLDAGRIEEpvvnppklllppssrnlDLDGIPVLDLFSIYACLRSFSTLLFLSPFELEDFVAALKCSSPNLLFDSVHVSILRILRKHLEHLSKEGCESASDCLRSLNWGLLDLITWPIFMAEYFLIHNSGLKPGFELTRLKLFSSEYCKQPVSVKIEILRCLCDDMIEVEAIRMELNRRSSVAEPEMDFDRNINNEIGKRRRVAMDISAGSCLTEEVVDDANDWNSDECCLCKMDGSLLCCDGCPAAYHSKCVGVANVPEGDWFCPECALDRHKPWMKPRKSLRGAELLGVDPHGRLYFCSCGYLLVSDSCDTELILNYYCRDDLNFVIDVLKSSDTFYGGIINAICKQWDITVSSNGVRSNLALNTVSLSRHMKAEVPTISEIDNEQKLEENFLAGYSNRPDNALSKSANLLDSVTAMELPNISSEGSAETTQMNSGFDNFQKEGPDNSIRAAEFSNQSEIAGKLPAPGHNSMTSSTSDIKQKFASSGCNSSPTNSRKGDALQLQPEIAYMNRYSFAQTASSVAEELMHKSSNEISKEPINSNEEIISKQMKAILKKWDKFYWPNTQKLNADTQKEKCGWCFSCKSATDDMDCLFYMNNGRVLGSSESEVAGLLSKRNKKGHLVDVICHILSIEDRllglllgPWLNPHYTKLWRKSALKAADMASVKHLLLTLEANLQHLALSAEWFKHVDPVVTVGSASHIVIASSRANSKAGAGRKKARDFDGNPSTKAAGGLSLCWWRGGRLSCQLFSWKRLPRSLVSKAARQAGCMKIPGILYPENSDFARRSRTVAWRAAVESSTSVEQLAIQVREFDSNVRWDDIENTHPLCTMDKEFRKSVRLFKKAIIRRKCLKEEGVKYLVDFGKRRSVPDIVIRHGSMAEESSSGRKKYWLNESYVPLHLLKSFEERRVARKSPKLSSGKLSEPFRVIKKSLRDRGFSYLFSKAARSEYYQCGHCSKDVLIRDAVCCQDCKDNYGVSGYFHKRHIRKSAGAVTTECKYTCYQCQDGRFKKDTRTAKNGTKKGKMNTRsvkvksqkskkTTGRRSVQSKNSKKTVVGGRSLRSRNDKKVAAIPLRRSARRAKLVSVQNRKHAgrkrgrpkskkktsrkpkkttsLQKKRTQSYYSYWLNGLFLSRKPDDDRVMQFTRKNFLAASELLTDTLDQPKCYLCHEAEHTSTSNYIACEICGGNKFSMSLSSDT
**********************************************************************************************************************************NLDLDGIPVLDLFSIYACLRSFSTLLFLSPFELEDFVAALKCSSPNLLFDSVHVSILRILRKHLEHLSKEGCESASDCLRSLNWGLLDLITWPIFMAEYFLIHNSGLKPGFELTRLKLFSSEYCKQPVSVKIEILRCLCDDMIEVEAIRMEL********************IGKRRRVAMDISAGSCLTEEVVDDANDWNSDECCLCKMDGSLLCCDGCPAAYHSKCVGVANVPEGDWFCPECALDRHKPWMKPRKSLRGAELLGVDPHGRLYFCSCGYLLVSDSCDTELILNYYCRDDLNFVIDVLKSSDTFYGGIINAICKQWDITVSSNGVRSNLALNTVSL*******************************************************************************************************************************************AYMNRY**********************************KQMKAILKKWDKFYWPNTQKLNADTQKEKCGWCFSCKSATDDMDCLFYMNNGRVLGSS**EVAGLLSKRNKKGHLVDVICHILSIEDRLLGLLLGPWLNPHYTKLWRKSALKAADMASVKHLLLTLEANLQHLALSAEWFKHVDPVVTVGSASHIVIA**************************AGGLSLCWWRGGRLSCQLFSWKRLPRSLVSKAARQAGCMKIPGILYPENSDFARRSRTVAWRAAVESSTSVEQLAIQVREFDSNVRWDDIENTHPLCTMDKEFRKSVRLFKKAIIRRKCLKEEGVKYLVDFGKRRSVPDIVIRH************KYWLNESYVPLHLLKSF********************FRVIKKSLRDRGFSYLFSKAARSEYYQCGHCSKDVLIRDAVCCQDCKDNYGVSGYFHKRHIRKSAGAVTTECKYTCYQCQDGR*****************************************************************************************************************SYYSYWLNGLFLSRKPDDDRVMQFTRKNFLAASELLTDTLDQPKCYLCHEAEHTSTSNYIACEICGGNK*********
*********GDFGGHDK******************************************************************************************************************LDLDGIPVLDLFSIYACLRSFSTLLFLSPFELEDFVAALKCSSPNLLFDSVHVSILRILRKHLEHLSKEGCESASDCLRSLNWGLLDLITWPIFMAEYFLIH**********************QPVSVKIEILRCLCDDMI****************************************************DANDWNSDECCLCKMDGSLLCCDGCPAAYHSKCVGVANVPEGDWFCPECAL*********************DPHGRLYFCSCGYLLVSDSCDTELILNYYCRDDLNFVIDVLKSSDTFYGGIINAICKQWDITVSSNGVRSNL****V**********************************************************************************************************************************************YMNRYSF*********************************QMKAILKKWDKFYWPNTQKLNADTQKEKCGWCFSCKSATDDMDCLFYMNNGRVLGSSESEVAGLLSKRNKKGHLVDVICHILSIEDRLLGLLLGPWLNPHYTKLWRKSALKAADMASVKHLLLTLEANLQHLALSAEWFKHVDPVVTVGS*************************************SLCWWRGGRLSCQLFSWKRLPRSLVS*AA**AGCMKIPGILYPENSDFARRSRTVAWRAAVESSTSVEQLAIQVREFDSNVRWDDIENTH************VRLFKKAIIRRKCLKEEGVKYLVDFGKRRSVPDIVI****************WLNESYVPLHLLKS*****************************RDRGFSYLFSKAARSEYYQCGHCSKDVLIRDAVCCQDCKDNYGVSGYFHKRHIRKSAGAVTTECKYTCYQCQDGR*****************************************************************************************************************SYYSYWLNGLFLSRKPDDDRVMQFTRKNFLAASELLTDTLDQPKCYLCHEAEHTSTSNYIACEICGGNKFSMSL****
********VGDFGGHDKSNEVQLKEDFATPASTVIDGCQGDIGR****************DINSVTKPVL*************LSSKISCEVNDAMADVSMEELPATLDAGRIEEPVVNPPKLLLPPSSRNLDLDGIPVLDLFSIYACLRSFSTLLFLSPFELEDFVAALKCSSPNLLFDSVHVSILRILRKHLEHLSKEGCESASDCLRSLNWGLLDLITWPIFMAEYFLIHNSGLKPGFELTRLKLFSSEYCKQPVSVKIEILRCLCDDMIEVEAIRMELNRRSSVAEPEMDFDRNINNEIGKRRRVAMDISAGSCLTEEVVDDANDWNSDECCLCKMDGSLLCCDGCPAAYHSKCVGVANVPEGDWFCPECALDRHKPWMKPRKSLRGAELLGVDPHGRLYFCSCGYLLVSDSCDTELILNYYCRDDLNFVIDVLKSSDTFYGGIINAICKQWDITVSSNGVRSNLALNTVSLSRHMKAEVPTISEIDNEQKLEENFLAGYSNRPDNALSKSANLLDSVTAMELPNISSEGSAETTQMNSGFDNFQKEGPDNSIRAAEFSNQSEIAGKLPA*********************************ALQLQPEIAYMNRYSFAQTASSVAEELMHKSSNEISKEPINSNEEIISKQMKAILKKWDKFYWPNTQKLNADTQKEKCGWCFSCKSATDDMDCLFYMNNGRVLGSSESEVAGLLSKRNKKGHLVDVICHILSIEDRLLGLLLGPWLNPHYTKLWRKSALKAADMASVKHLLLTLEANLQHLALSAEWFKHVDPVVTVGSASHIVIASSR***************DGNPSTKAAGGLSLCWWRGGRLSCQLFSWKRLPRSLVSKAARQAGCMKIPGILYPENSDFA******************EQLAIQVREFDSNVRWDDIENTHPLCTMDKEFRKSVRLFKKAIIRRKCLKEEGVKYLVDFGKRRSVPDIVIRHG*********RKKYWLNESYVPLHLLKSFEER************KLSEPFRVIKKSLRDRGFSYLFSKAARSEYYQCGHCSKDVLIRDAVCCQDCKDNYGVSGYFHKRHIRKSAGAVTTECKYTCYQCQDGRFKKDTRTAK********************************************RSRNDKKVAAIPLRRSARRA*************************************RTQSYYSYWLNGLFLSRKPDDDRVMQFTRKNFLAASELLTDTLDQPKCYLCHEAEHTSTSNYIACEICGGNKFSMSLSSDT
****DSMLVGDFGGHDKSNEVQLKEDFATPASTVIDGCQGDI**********RKKRK*******************************************************IEEPVVNPPKLLLPPSSRNLDLDGIPVLDLFSIYACLRSFSTLLFLSPFELEDFVAALKCSSPNLLFDSVHVSILRILRKHLEHLSKEGCESASDCLRSLNWGLLDLITWPIFMAEYFLIHNSGLKPGFELTRLKLFSSEYCKQPVSVKIEILRCLCDDMIEVEAIRMELNRRSSVAEPEMDFDRNINN*IGKRRRVAMDISAGSCLTEE*VDDANDWNSDECCLCKMDGSLLCCDGCPAAYHSKCVGVANVPEGDWFCPECALDRHKPWMKPRKSLRGAELLGVDPHGRLYFCSCGYLLVSDSCDTELILNYYCRDDLNFVIDVLKSSDTFYGGIINAICKQWDITVSSNGVRSNLALNTVSLSRHMKAEVPTISEIDNE****ENFLAGYSNRPDN******************************************************************************************************PEIAYMNRYSFAQTASSVAEELM*****************IISKQMKAILKKWDKFYWPNTQKLNADTQKEKCGWCFSCKSATDDMDCLFYMNNGRVLGSSESEVAGLLSKRNKKGHLVDVICHILSIEDRLLGLLLGPWLNPHYTKLWRKSALKAADMASVKHLLLTLEANLQHLALSAEWFKHVDPVVTVGSASHIVIA****************************GLSLCWWRGGRLSCQLFSWKRLPRSLVSKAARQAGCMKIPGILYPENSDFARRSRTVAWRAAVESSTSVEQLAIQVREFDSNVRWDDIENTH*L***DKEFRKSVRLFKKAIIRRKCLKEEGVKYLVDFGKRRSVPDIVIRHGSMAEESSSGRKKYWLNESYVPLHLLKSFEERRVARKSPKLSSGKLSEPFRVIKKSLRDRGFSYLFSKAARSEYYQCGHCSKDVLIRDAVCCQDCKDNYGVSGYFHKRHIRKSAGAVTTECKYTCYQCQDGRFKK******************************GRRS***********GGRSLRSRNDKKVAA***********************************************RTQSYYSYWLNGLFLSRKPDDDRVMQFTRKNFLAASELLTDTLDQPKCYLCHEAEHTSTSNYIACEICGGNKFSMSLSS**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MPKEDSMLVGDFGGHDKSNEVQLKEDFATPASTVIDGCQGDIGRSHKKLSGRRKKRKAVDDINSVTKPVLRRSTRRGSARYKDLSSKISCEVNDAMADVSMEELPATLDAGRIEEPVVNPPKLLLPPSSRNLDLDGIPVLDLFSIYACLRSFSTLLFLSPFELEDFVAALKCSSPNLLFDSVHVSILRILRKHLEHLSKEGCESASDCLRSLNWGLLDLITWPIFMAEYFLIHNSGLKPGFELTRLKLFSSEYCKQPVSVKIEILRCLCDDMIEVEAIRMELNRRSSVAEPEMDFDRNINNEIGKRRRVAMDISAGSCLTEEVVDDANDWNSDECCLCKMDGSLLCCDGCPAAYHSKCVGVANVPEGDWFCPECALDRHKPWMKPRKSLRGAELLGVDPHGRLYFCSCGYLLVSDSCDTELILNYYCRDDLNFVIDVLKSSDTFYGGIINAICKQWDITVSSNGVRSNLALNTVSLSRHMKAEVPTISEIDNEQKLEENFLAGYSNRPDNALSKSANLLDSVTAMELPNISSEGSAETTQMNSGFDNFQKEGPDNSIRAAEFSNQSEIAGKLPAPGHNSMTSSTSDIKQKFASSGCNSSPTNSRKGDALQLQPEIAYMNRYSFAQTASSVAEELMHKSSNEISKEPINSNEEIISKQMKAILKKWDKFYWPNTQKLNADTQKEKCGWCFSCKSATDDMDCLFYMNNGRVLGSSESEVAGLLSKRNKKGHLVDVICHILSIEDRLLGLLLGPWLNPHYTKLWRKSALKAADMASVKHLLLTLEANLQHLALSAEWFKHVDPVVTVGSASHIVIASSRANSKAGAGRKKARDFDGNPSTKAAGGLSLCWWRGGRLSCQLFSWKRLPRSLVSKAARQAGCMKIPGILYPENSDFARRSRTVAWRAAVESSTSVEQLAIQVREFDSNVRWDDIENTHPLCTMDKEFRKSVRLFKKAIIRRKCLKEEGVKYLVDFGKRRSVPDIVIRHGSMAEESSSGRKKYWLNESYVPLHLLKSFEERRVARKSPKLSSGKLSEPFRVIKKSLRDRGFSYLFSKAARSEYYQCGHCSKDVLIRDAVCCQDCKDNYGVSGYFHKRHIRKSAGAVTTECKYTCYQCQDGRFKKDTRTAKNGTKKGKMNTRSVKVKSQKSKKTTGRRSVQSKNSKKTVVGGRSLRSRNDKKVAAIPLRRSARRAKLVSVQNRKHAGRKRGRPKSKKKTSRKPKKTTSLQKKRTQSYYSYWLNGLFLSRKPDDDRVMQFTRKNFLAASELLTDTLDQPKCYLCHEAEHTSTSNYIACEICGGNKFSMSLSSDT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1306 2.2.26 [Sep-21-2011]
Q9W0T1 2669 Nucleosome-remodeling fac no no 0.188 0.092 0.283 4e-22
Q12830 3046 Nucleosome-remodeling fac no no 0.202 0.086 0.255 7e-19
Q9ULU4 1186 Protein kinase C-binding no no 0.030 0.033 0.55 2e-09
Q14839 1912 Chromodomain-helicase-DNA no no 0.049 0.033 0.391 2e-08
Q6PDQ2 1915 Chromodomain-helicase-DNA no no 0.049 0.033 0.405 3e-08
Q04779684 Transcriptional regulator yes no 0.083 0.159 0.304 9e-08
Q6BER5 2194 Nucleosome-remodeling fac yes no 0.231 0.137 0.239 9e-08
O97159 1982 Chromodomain-helicase-DNA no no 0.031 0.020 0.511 9e-08
O884912588 Histone-lysine N-methyltr no no 0.029 0.015 0.525 1e-07
Q96L732696 Histone-lysine N-methyltr no no 0.029 0.014 0.525 2e-07
>sp|Q9W0T1|NU301_DROME Nucleosome-remodeling factor subunit NURF301 OS=Drosophila melanogaster GN=E(bx) PE=1 SV=2 Back     alignment and function desciption
 Score =  108 bits (269), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 128/303 (42%), Gaps = 57/303 (18%)

Query: 123 LLLPPSSRNLDLDGIPVLDLFSIYACLRSFSTLLFLSPFELEDFVAALKCSSPNLLFDSV 182
           L LP SS +L +    VL   SIY  LR F  ++ LSPF  ED  AAL C   + L   V
Sbjct: 175 LDLPDSSEDLFIANTHVLRALSIYEVLRRFRHMVRLSPFRFEDLCAALACEEQSALLTEV 234

Query: 183 HVSILR-ILRKHLEHLSKEGCESASDCLRSLNWGLLDLITWPIFMAEYFLIHNSGLKPGF 241
           H+ +L+ ILR+     +  G     D + +++  L+D ITWP  +  Y     +  +  F
Sbjct: 235 HIMLLKAILREEDAQGTHFGPLDQKDTV-NISLYLIDSITWPEVLRSYVESDKTFDRNVF 293

Query: 242 ELTRLKLFSSEYCKQPVSVKIEILRCLCDDMIEVEAIRMELNRRSSVAEPEMDFDRNINN 301
            +    L  +EY    +  ++E+L+ L D  +   +IR  +     + E  + +D     
Sbjct: 294 HI----LSHTEYPYTGIDNRLEVLQFLSDQFLTSNSIRDVM-----LQEGPIHYD----- 339

Query: 302 EIGKRRRVAMDISAGSCLTEEVVDDANDWNSDECCLCKMDGSLLCCDGCPAAYHSKCVG- 360
                                          D C +C   G LLCC+ CPA YH +CV  
Sbjct: 340 -------------------------------DHCRVCHRLGDLLCCETCPAVYHLECVDP 368

Query: 361 -VANVPEGDWFCPEC-------ALDRHKPWMKPRKSLRGAELLGVDPHGRLYFCSCGYLL 412
            + +VP  DW C  C        +D   P  K    +R  + LGVD HGR Y+     + 
Sbjct: 369 PMNDVPTEDWQCGLCRSHKVSGVVDCVLPQEKQGVLIR-HDSLGVDRHGRKYWFIARRIF 427

Query: 413 VSD 415
           + D
Sbjct: 428 IED 430
Histone-binding component of NURF (nucleosome remodeling factor), a complex which catalyzes ATP-dependent nucleosome sliding and facilitates transcription of chromatin. Specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes. Required for homeotic gene expression, proper larval blood cell development, normal male X chromosome morphology, ecdysteroid signaling and metamorphosis.
Drosophila melanogaster (taxid: 7227)
>sp|Q12830|BPTF_HUMAN Nucleosome-remodeling factor subunit BPTF OS=Homo sapiens GN=BPTF PE=1 SV=3 Back     alignment and function description
>sp|Q9ULU4|PKCB1_HUMAN Protein kinase C-binding protein 1 OS=Homo sapiens GN=ZMYND8 PE=1 SV=2 Back     alignment and function description
>sp|Q14839|CHD4_HUMAN Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4 PE=1 SV=2 Back     alignment and function description
>sp|Q6PDQ2|CHD4_MOUSE Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1 Back     alignment and function description
>sp|Q04779|RCO1_YEAST Transcriptional regulatory protein RCO1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RCO1 PE=1 SV=1 Back     alignment and function description
>sp|Q6BER5|NU301_CAEEL Nucleosome-remodeling factor subunit NURF301-like OS=Caenorhabditis elegans GN=nurf-1 PE=1 SV=2 Back     alignment and function description
>sp|O97159|CHDM_DROME Chromodomain-helicase-DNA-binding protein Mi-2 homolog OS=Drosophila melanogaster GN=Mi-2 PE=1 SV=2 Back     alignment and function description
>sp|O88491|NSD1_MOUSE Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific OS=Mus musculus GN=Nsd1 PE=1 SV=1 Back     alignment and function description
>sp|Q96L73|NSD1_HUMAN Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific OS=Homo sapiens GN=NSD1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1306
255544948 1915 hypothetical protein RCOM_1578820 [Ricin 0.943 0.643 0.594 0.0
359479239 1976 PREDICTED: uncharacterized protein LOC10 0.983 0.649 0.552 0.0
296083821 1805 unnamed protein product [Vitis vinifera] 0.924 0.669 0.559 0.0
356544359 1702 PREDICTED: uncharacterized protein LOC10 0.967 0.742 0.511 0.0
356540950 1735 PREDICTED: uncharacterized protein LOC10 0.945 0.711 0.515 0.0
1478645691318 hypothetical protein VITISV_022739 [Viti 0.786 0.779 0.578 0.0
297807283 1581 hypothetical protein ARALYDRAFT_488087 [ 0.941 0.777 0.470 0.0
334187637 1602 PHD-finger and DNA binding domain-contai 0.937 0.764 0.468 0.0
14586370 1595 putative protein [Arabidopsis thaliana] 0.939 0.769 0.468 0.0
357474041 1573 Chromodomain helicase DNA binding protei 0.767 0.637 0.520 0.0
>gi|255544948|ref|XP_002513535.1| hypothetical protein RCOM_1578820 [Ricinus communis] gi|223547443|gb|EEF48938.1| hypothetical protein RCOM_1578820 [Ricinus communis] Back     alignment and taxonomy information
 Score = 1454 bits (3763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 766/1289 (59%), Positives = 949/1289 (73%), Gaps = 57/1289 (4%)

Query: 34   VIDGCQGDIGRSHKKLSG-RRKKRKAVDDINSVTK-PVLRRSTRRGSARYKDLSSKISCE 91
            V D  QGD G + K+++G RRK+R+  D +N+  +  VLRRSTRRG+A+   L++     
Sbjct: 427  VTDEVQGDTGTAFKEVTGSRRKRRRISDHMNATPEMTVLRRSTRRGTAKNDVLTATSLSM 486

Query: 92   VNDAMADVSM----EELPATLDAGRIEEPVVNPPKLLLPPSSRNLDLDGIPVLDLFSIYA 147
            VN  +   ++    EE PA    G  EEPVV P  + LPPSSRNLDLDG  V+DLFS+YA
Sbjct: 487  VNGLLVSPAVSALAEEKPAKSCHGWHEEPVVLPAMVQLPPSSRNLDLDGNLVVDLFSVYA 546

Query: 148  CLRSFSTLLFLSPFELEDFVAALKCSSPNLLFDSVHVSILRILRKHLEHLSKEGCESASD 207
            CLRSFSTLLFLSPF+LE+FVAALKC++P+ LFD +HVSIL+ L+KH+E+LS EG ESAS+
Sbjct: 547  CLRSFSTLLFLSPFDLEEFVAALKCNTPSSLFDCIHVSILQTLKKHVEYLSNEGSESASN 606

Query: 208  CLRSLNWGLLDLITWPIFMAEYFLIHNSGLKPGFELTRLKLFSSEYCKQPVSVKIEILRC 267
            CLRSLNWG LDLITWP+FM EYFLIH + LKPG  L+ LKL   +Y KQPVS+KIEILRC
Sbjct: 607  CLRSLNWGFLDLITWPVFMVEYFLIHGTDLKPGINLSHLKLLKDDYYKQPVSLKIEILRC 666

Query: 268  LCDDMIEVEAIRMELNRRSSVAEPEMDFDRNINNEIGKRRRVAMDISAGSCLTEEVVDDA 327
            LCD MIEV+ +R ELNRRSS AE ++D DRN+N    K+RR  MD+S GSCLTE+ VD++
Sbjct: 667  LCDGMIEVDILRSELNRRSSGAESDIDIDRNMNFGALKKRRSGMDVSTGSCLTEDTVDES 726

Query: 328  NDWNSDECCLCKMDGSLLCCDGCPAAYHSKCVGVAN--VPEGDWFCPECALDRHKPWMKP 385
             DWNSDECCLCKMDG+L+CCDGCPAAYHSKCVGVAN  +PEGDWFCPECA+DRHKPWMK 
Sbjct: 727  TDWNSDECCLCKMDGNLICCDGCPAAYHSKCVGVANDSLPEGDWFCPECAIDRHKPWMKT 786

Query: 386  RKSLRGAELLGVDPHGRLYFCSCGYLLVSDSCDTELILNYYCRDDLNFVIDVLKSSDTFY 445
            R SLRGAELLGVDP+GRLYF SCGYLLVS+SC+TE   NYY RDDLN VI+VL+SS+  Y
Sbjct: 787  RNSLRGAELLGVDPYGRLYFSSCGYLLVSESCETESSFNYYHRDDLNAVIEVLRSSEMIY 846

Query: 446  GGIINAICKQWDITVSSNGVRSNLA-------LNT-VSLSRHMKAEVPTI-SEIDNEQKL 496
              I+ AI   W+I VSSNG   +L        LN  V  +    +E   I +E   E++ 
Sbjct: 847  SSILKAILNHWEIPVSSNGASCSLGSLNHGIYLNKCVVTAAFASSEADAIKNETAGERQP 906

Query: 497  EENFLAGYSNRPDNALSKSANLLDSVTAMELPNISSEGSAETTQMNSGFDNFQKEGPDNS 556
             ENF+ G S      +SKS     S T +     SSEGSAETTQ +    NF+KE PD S
Sbjct: 907  GENFVTGCSGHIHIDVSKSV----SQTCL-----SSEGSAETTQTSLENQNFKKEKPDCS 957

Query: 557  IRAAEFSNQSEIAGKLPAPGHNSMTSSTSDIKQ-KFASSGCNSSPT---NSRKGDALQLQ 612
             ++ E              G N +     D K+     S  NS P+   N + GDA Q+Q
Sbjct: 958  NKSTE------------PMGDNCLEPPCLDSKKANVIRSAANSYPSFALNGKNGDASQIQ 1005

Query: 613  PEIAYMNRYSFAQTASSVAEELMHKSSNEISKEPINSNEEIISKQMKAILKKWDKFYWPN 672
            PE +Y+N Y+F   ASSVAE+L+HKSS++  ++ I S EEIIS QMK + K+  KF+W +
Sbjct: 1006 PETSYLNYYNFGHIASSVAEDLLHKSSDKTIEDSIKSEEEIISAQMKILSKRCPKFHWSS 1065

Query: 673  TQKLNADTQKEKCGWCFSCKSATDDMDCLFYMNNGRVLG-SSESEVAGLLSKRNKKGHLV 731
              +LN D QKEKCGWCFSC++++DD  CLF M    V G  S  E AGL +K NKKGHL 
Sbjct: 1066 IPRLNVDVQKEKCGWCFSCRASSDDPGCLFNMTLSSVGGEGSAIESAGLQAKGNKKGHLT 1125

Query: 732  DVICHILSIEDRLLGLLLGPWLNPHYTKLWRKSALKAADMASVKHLLLTLEANLQHLALS 791
            D+I H+L IEDRL GLLLGPWLNP+Y+KLWRKS LKA+D+ S+KHLLLTLE+NL  LALS
Sbjct: 1126 DIISHVLVIEDRLQGLLLGPWLNPNYSKLWRKSVLKASDIVSLKHLLLTLESNLSRLALS 1185

Query: 792  AEWFKHVDPVVTVGSASHIVIASSRANSKAGAGRKKAR--DFDGNPSTKAAGGLSLCWWR 849
            AEW KHVD    +GSASHIV+AS RA+SK G  +K+AR  +FD NPS+ ++ GLS+ WWR
Sbjct: 1186 AEWLKHVDSSPRMGSASHIVMASLRASSKNGISKKRARFSEFDSNPSSNSSSGLSMLWWR 1245

Query: 850  GGRLSCQLFSWKRLPRSLVSKAARQAGCMKIPGILYPENSDFARRSRTVAWRAAVESSTS 909
            GGRLS QLFSWK LP SL SK ARQAGCMKI G+LYPENSDFA+RS+ +AWRAAVESS +
Sbjct: 1246 GGRLSRQLFSWKVLPHSLASKGARQAGCMKISGMLYPENSDFAKRSKYIAWRAAVESSNT 1305

Query: 910  VEQLAIQVREFDSNVRWDDIENTHPLCTMDKEFRKSVRLFKKAIIRRKCLKEEGVKYLVD 969
            VEQ+A+QVRE DSN+RWD+I N +PL  MDKE RKS+RLFKK IIRRK ++ EG KYL+D
Sbjct: 1306 VEQIALQVRELDSNIRWDEIGNRNPLLMMDKESRKSIRLFKKVIIRRKSMELEGAKYLLD 1365

Query: 970  FGKRRSVPDIVIRHGSMAEESSSGRKKYWLNESYVPLHLLKSFEERRVARKSPKLSSGKL 1029
            FGKR+ +P+IV ++GS+ EESSS RKKYWLNESYVPL+LLKSFE++R+AR+S K++SGKL
Sbjct: 1366 FGKRKCIPEIVSKNGSIVEESSSERKKYWLNESYVPLYLLKSFEQKRIARRSSKMTSGKL 1425

Query: 1030 SEPFRVIKKSLRDRGFSYLFSKAARSEYYQCGHCSKDVLIRDAVCCQDCKDNYGVSGYFH 1089
            S+    +KK L+ RGFSYLF+KA R E++QCGHC+KDV +R+AVCCQ CK      G+FH
Sbjct: 1426 SDASVSMKKPLKKRGFSYLFAKAERPEHHQCGHCNKDVPVREAVCCQYCK------GFFH 1479

Query: 1090 KRHIRKSAGAVTTECKYTCYQCQDGRF-KKDTRTAKNGTKKGKMNTRSVKVKSQKSKKTT 1148
            KRH+RKSAG+++ ECKYTC++C  G++ K D++T KN  K+GK   RS K  +QKSKKTT
Sbjct: 1480 KRHVRKSAGSMSAECKYTCHRCVAGKYMKMDSKTGKNDEKRGKNKNRSTKTHNQKSKKTT 1539

Query: 1149 -GRRSVQSKNSKKTVVGGRSLRSRNDKK-VAAIPLRRSARRAKLVSVQN-RKHAGRKRGR 1205
             G  SV  KNSKKT+   R LRS+ +KK    +PLRRS R+AKL S+QN +    +K  +
Sbjct: 1540 VGSSSVHPKNSKKTLRSSRLLRSQKNKKATVVVPLRRSPRKAKLNSLQNKKSRGRKKGKQ 1599

Query: 1206 PKSKKKTSRKPKKTTSLQKKRTQSYYSYWLNGLFLSRKPDDDRVMQFTRKNFLAASELLT 1265
             K KK T +KP K TS +KKRTQ+Y+++WLNGLFL+RKPDD+RVM F RK FLA SE  +
Sbjct: 1600 AKPKKTTGKKPTKVTSWRKKRTQAYHNFWLNGLFLTRKPDDERVMHFRRKRFLAPSE--S 1657

Query: 1266 DTLDQPKCYLCHEAEHTSTSNYIACEICG 1294
               DQPKC+LC EA +TST +YI+CEICG
Sbjct: 1658 AIHDQPKCHLCSEAGNTSTLSYISCEICG 1686

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359479239|ref|XP_002274937.2| PREDICTED: uncharacterized protein LOC100260139 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296083821|emb|CBI24209.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356544359|ref|XP_003540620.1| PREDICTED: uncharacterized protein LOC100791832 [Glycine max] Back     alignment and taxonomy information
>gi|356540950|ref|XP_003538947.1| PREDICTED: uncharacterized protein LOC100800973 [Glycine max] Back     alignment and taxonomy information
>gi|147864569|emb|CAN78969.1| hypothetical protein VITISV_022739 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297807283|ref|XP_002871525.1| hypothetical protein ARALYDRAFT_488087 [Arabidopsis lyrata subsp. lyrata] gi|297317362|gb|EFH47784.1| hypothetical protein ARALYDRAFT_488087 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|334187637|ref|NP_568273.2| PHD-finger and DNA binding domain-containing protein [Arabidopsis thaliana] gi|332004422|gb|AED91805.1| PHD-finger and DNA binding domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|14586370|emb|CAC42901.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357474041|ref|XP_003607305.1| Chromodomain helicase DNA binding protein [Medicago truncatula] gi|355508360|gb|AES89502.1| Chromodomain helicase DNA binding protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1306
TAIR|locus:2162509 1566 AT5G22760 "AT5G22760" [Arabido 0.419 0.349 0.302 1.4e-117
FB|FBgn0000541 2669 E(bx) "Enhancer of bithorax" [ 0.209 0.102 0.237 1e-17
UNIPROTKB|Q5TH12175 ZMYND8 "Protein kinase C-bindi 0.035 0.268 0.5 2e-10
TAIR|locus:2163961557 AT5G63900 "AT5G63900" [Arabido 0.082 0.193 0.350 4.7e-10
ASPGD|ASPL0000065953841 AN7300 [Emericella nidulans (t 0.106 0.165 0.288 4.9e-09
UNIPROTKB|Q12830 3046 BPTF "Nucleosome-remodeling fa 0.150 0.064 0.257 2.1e-08
UNIPROTKB|J9JHE8 2842 BPTF "Uncharacterized protein" 0.150 0.069 0.257 2.6e-08
TAIR|locus:22010211138 AT1G05380 "AT1G05380" [Arabido 0.081 0.094 0.355 5.6e-08
ZFIN|ZDB-GENE-030131-21991131 prkcbp1l "protein kinase C bin 0.042 0.049 0.5 5.9e-08
UNIPROTKB|E7ETD6 2764 BPTF "Nucleosome-remodeling fa 0.150 0.071 0.257 6.4e-08
TAIR|locus:2162509 AT5G22760 "AT5G22760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 610 (219.8 bits), Expect = 1.4e-117, Sum P(4) = 1.4e-117
 Identities = 181/599 (30%), Positives = 282/599 (47%)

Query:   541 MNSGFDNFQKEGPDNSIRAAEFSNQSEIAGKLPAPG---HNSMTSSTSD--IKQKFASSG 595
             + +   + QKEG D      E  + +  +G L       H S +  T    + +   +  
Sbjct:   556 VETDLSHMQKEGGDEVSDIGEPDSANSSSGNLIQNAVRLHPSASGYTGGPVLARSSGAQE 615

Query:   596 CNSSPTNSRKGDALQLQPEIAYMNRYSFAQTASSVAEEL------------MHKSSNEIS 643
              N    +++KG  L  +P  +Y+N Y+  + A+S A  L            +HK SN  +
Sbjct:   616 KNLVAVSTQKG--LSFKPH-SYINHYTNGELAASAAATLAILMSEETHEPDLHKFSN--A 670

Query:   644 KEPINSNEEIISKQMKAILKKWDKFYWPNTQKLNADTQKEKCGWCFSCK-SATDDMDCLF 702
             K+  +SN   I  QMKA       F+WP+  K   +  +E+CGWC SCK ++     C+ 
Sbjct:   671 KKAASSN---ILLQMKAFSIVASSFFWPSPDK--KEITRERCGWCHSCKLTSASRRGCML 725

Query:   703 YMNNGRVLGSSESEV---AGLLSKRNKKGHLVDVICHILSIEDRXXXXXXXPWLNPHYTK 759
                N  V G+++S +   +GL   +N +G L  +  + L +E+        P+L+     
Sbjct:   726 ---NAAVTGATKSAMKIYSGLFPLKNGEGVLSRIAAYALYLEESLRGLIAGPFLSESLRY 782

Query:   760 LWRKSALKAADMASVKHLLLTLEANLQHLALSAEWFKHVDPVVTVGSASHIVIASSRANS 819
              WRK   +A+   ++K LLL LE N+  +ALS++W K +D  +   S       +  A  
Sbjct:   783 QWRKKLEEASTCKAMKALLLELEENICSIALSSDWLKLMDDWLIELSIFQSAPVTVGATQ 842

Query:   820 KAGAGRKKARDFDGNPSTKAAGGLSLCWWRGGRLSCQLFSWKRLPRSLVSKAARQAGCMK 879
             K   GR+K R+   N + + +   S  WWRGG+LS  +     L +  + KAA Q G  K
Sbjct:   843 KRRPGRRKQRNQAEN-TAQGSDDDSFTWWRGGKLSKIILLKAVLSKPKIKKAAWQGGTKK 901

Query:   880 IPGILYPENSDFARRSRTVAWRAAVESSTSVEQLAIQVREFDSNVRWDDIENTHPLCTMD 939
              P   Y + S   +RSR   W+AAVESS ++ QLA+QVR  D N+RW ++          
Sbjct:   902 FPEFNYGDGSYIPKRSRRSIWKAAVESSKNISQLALQVRYLDMNIRWSELVRPEQNVQDV 961

Query:   940 KEFRKSVRLFKKAIIRRKCLKEEGVKYLVDFGKRRSVPDIVIRHGSMAEESSSGRKKYWL 999
             K       +F+ A I  K + +  V+Y V FG ++ +P  V+++    E+S    +KYW 
Sbjct:   962 KGPETEATIFRNASICVKKIIDNKVRYGVVFGNQKHLPSRVMKNVIEVEKSEDRNEKYWF 1021

Query:  1000 NESYVPLHLLKSFEE--RRVAR----KSPKLSSGKLSEPFRVIKKSLRDRGFSYLFSKAA 1053
             +E+ VPL+L+K +EE   RV      K P     KL +  R +K S R   FSYL S+  
Sbjct:  1022 HEARVPLYLIKEYEESLHRVVHIPFIKKPSRKISKLQK--RQLKAS-RANIFSYLASRRD 1078

Query:  1054 RSEYYQCGHCSKDVLIRDAVCCQDCKDNYGVSGYFHKRHIRKSAGAV-TTECKYTCYQC 1111
              +E   C  C  DV +RD++ C  C+      G+ HK     S       E   TC +C
Sbjct:  1079 NTEKCSCASCHLDVFLRDSITCSTCQ------GFCHKECTMSSQHTTGQLEILVTCKRC 1131
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS
GO:0008270 "zinc ion binding" evidence=IEA
GO:0009630 "gravitropism" evidence=RCA
FB|FBgn0000541 E(bx) "Enhancer of bithorax" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q5TH12 ZMYND8 "Protein kinase C-binding protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
TAIR|locus:2163961 AT5G63900 "AT5G63900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000065953 AN7300 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q12830 BPTF "Nucleosome-remodeling factor subunit BPTF" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J9JHE8 BPTF "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
TAIR|locus:2201021 AT1G05380 "AT1G05380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-2199 prkcbp1l "protein kinase C binding protein 1, like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E7ETD6 BPTF "Nucleosome-remodeling factor subunit BPTF" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00022235001
SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (1604 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1306
pfam0279161 pfam02791, DDT, DDT domain 1e-12
smart0057163 smart00571, DDT, domain in different transcription 3e-11
pfam0062851 pfam00628, PHD, PHD-finger 1e-10
smart0024947 smart00249, PHD, PHD zinc finger 1e-09
COG5141669 COG5141, COG5141, PHD zinc finger-containing prote 1e-04
>gnl|CDD|202398 pfam02791, DDT, DDT domain Back     alignment and domain information 
 Score = 63.4 bits (155), Expect = 1e-12
 Identities = 21/57 (36%), Positives = 32/57 (56%)

Query: 139 VLDLFSIYACLRSFSTLLFLSPFELEDFVAALKCSSPNLLFDSVHVSILRILRKHLE 195
             DL  ++  L +F  +L LSPF L+DF  AL C+    L   VH+++L++L    E
Sbjct: 4   FGDLLMVWEFLNTFGEVLGLSPFTLDDFEEALLCTDSEELLGEVHIALLKLLVADEE 60

This domain is approximately 60 residues in length, and is predicted to be a DNA binding domain. The DDT domain is named after (DNA binding homeobox and Different Transcription factors). It is exclusively associated with nuclear domains, and is thought to be arranged into three alpha helices. Length = 61
>gnl|CDD|214726 smart00571, DDT, domain in different transcription and chromosome remodeling factors Back     alignment and domain information
>gnl|CDD|201356 pfam00628, PHD, PHD-finger Back     alignment and domain information
>gnl|CDD|214584 smart00249, PHD, PHD zinc finger Back     alignment and domain information
>gnl|CDD|227470 COG5141, COG5141, PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1306
KOG1473 1414 consensus Nucleosome remodeling factor, subunit NU 100.0
smart0057163 DDT domain in different transcription and chromoso 99.62
PF0279161 DDT: DDT domain; InterPro: IPR004022 This domain i 99.62
KOG4299613 consensus PHD Zn-finger protein [General function 98.29
KOG1244336 consensus Predicted transcription factor Requiem/N 98.05
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 98.02
KOG14731414 consensus Nucleosome remodeling factor, subunit NU 97.97
COG5034271 TNG2 Chromatin remodeling protein, contains PhD zi 97.88
KOG1973274 consensus Chromatin remodeling protein, contains P 97.86
KOG08251134 consensus PHD Zn-finger protein [General function 97.82
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 97.78
KOG0383696 consensus Predicted helicase [General function pre 97.62
KOG1512381 consensus PHD Zn-finger protein [General function 97.53
KOG09551051 consensus PHD finger protein BR140/LIN-49 [General 97.38
cd04718148 BAH_plant_2 BAH, or Bromo Adjacent Homology domain 97.26
KOG0956900 consensus PHD finger protein AF10 [General functio 96.94
KOG12451404 consensus Chromatin remodeling complex WSTF-ISWI, 96.52
COG5141669 PHD zinc finger-containing protein [General functi 96.37
KOG0954893 consensus PHD finger protein [General function pre 95.96
PF1561250 WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B 95.91
KOG4323464 consensus Polycomb-like PHD Zn-finger protein [Gen 95.9
KOG4443694 consensus Putative transcription factor HALR/MLL3, 95.78
PF1383136 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. 95.01
KOG0383696 consensus Predicted helicase [General function pre 94.11
KOG0957707 consensus PHD finger protein [General function pre 93.96
KOG4443694 consensus Putative transcription factor HALR/MLL3, 93.47
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 89.09
KOG4299613 consensus PHD Zn-finger protein [General function 88.1
KOG0957707 consensus PHD finger protein [General function pre 87.89
KOG1512381 consensus PHD Zn-finger protein [General function 87.27
KOG1244336 consensus Predicted transcription factor Requiem/N 86.89
PLN0016359 histone H4; Provisional 84.04
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 83.98
KOG4323464 consensus Polycomb-like PHD Zn-finger protein [Gen 81.68
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription] Back     alignment and domain information 
Probab=100.00  E-value=2.9e-119  Score=1072.14  Aligned_cols=919  Identities=24%  Similarity=0.328  Sum_probs=700.8

Q ss_pred             CccccCCCCCCCCCCCCCCCCCCCCchhHHhHHHHHHHhHhccccccccCCCHHHHHHHhcCCCCCchHHHHHHHHHHHH
Q 000745          111 GRIEEPVVNPPKLLLPPSSRNLDLDGIPVLDLFSIYACLRSFSTLLFLSPFELEDFVAALKCSSPNLLFDSVHVSILRIL  190 (1306)
Q Consensus       111 ~~~e~~~~~~P~l~LP~SS~dl~vP~e~V~dlLmVy~FLrsFs~~L~LSPFtLDDF~aAL~hde~s~LL~EIHvaLLk~L  190 (1306)
                      ||.|+...+.|||+||+||+||.||+++|+++|+||+|||+|+++|+||||+|||||+||.+.++|.||+||||||||+|
T Consensus       164 p~~~~e~~~vPpleLP~SSedi~IPne~Vm~alsIYevLRsF~~~LrisPF~feDFcaAL~~~~~ssLlaeVHvaLLrA~  243 (1414)
T KOG1473|consen  164 PDLEEEPPLVPPLELPESSEDIGIPNEHVMDALSIYEVLRSFSRQLRISPFRFEDFCAALISHEQSSLLAEVHVALLRAL  243 (1414)
T ss_pred             CChhhccccCCCccCCCcccccCCcHHHHHHHHHHHHHHHhhcceEEeCCccHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            56665555569999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhcccCccccchhhccccccCCCCCChHHHHHHHHhhcCCCCCCCcccccceeccCcccccChhhHHHHHHHHhh
Q 000745          191 RKHLEHLSKEGCESASDCLRSLNWGLLDLITWPIFMAEYFLIHNSGLKPGFELTRLKLFSSEYCKQPVSVKIEILRCLCD  270 (1306)
Q Consensus       191 rkd~E~ls~~G~~~a~~~~~~~~w~~LD~lTWPE~Lr~YLes~G~~~~Pele~~~l~ils~eYp~LPVe~KLeILqfLcD  270 (1306)
                      ++|++.+++..+..++++.+|++|++||.+|||||||+|+++.+.-..+-+...+-.+...+||+.||.+||+|||||||
T Consensus       244 lr~eD~~~Thfs~~d~KdsvnI~l~liD~lTWPevLrqY~ea~~~ad~~v~~~~n~fv~~~eY~~~pv~~klkILQ~L~D  323 (1414)
T KOG1473|consen  244 LREEDRLSTHFSPLDSKDSVNIDLYLIDTLTWPEVLRQYFEADKHADGPVWDIFNPFVVEDEYPYRPVSNKLKILQFLCD  323 (1414)
T ss_pred             hhhhhhcccccCccccccceeeeeehhccccHHHHHHHHHHhccccCcchhhhhccccccccccccchhhhHHHHHHHHH
Confidence            99999998888888889999999999999999999999999988766665554333355589999999999999999999


Q ss_pred             hhhhhHHHHHHHhccccccCCCccccccccccccccccccccccCCCcCchhccccCCCCCCccccccccCCceEecCCC
Q 000745          271 DMIEVEAIRMELNRRSSVAEPEMDFDRNINNEIGKRRRVAMDISAGSCLTEEVVDDANDWNSDECCLCKMDGSLLCCDGC  350 (1306)
Q Consensus       271 ~vLeSeaIRdELerR~~~~E~~~~~d~~~~~e~~KK~~~~~~~s~g~~l~ee~id~~~d~ndD~C~VC~~gG~LLcCD~C  350 (1306)
                      +||.+..+|+||+.+     ..+.                                    .+|+|.+|++.|+++||..|
T Consensus       324 q~l~~~s~R~e~~se-----~~~~------------------------------------~ddhcrf~~d~~~~lc~Et~  362 (1414)
T KOG1473|consen  324 QFLTVNSLRDEIDSE-----GEIE------------------------------------YDDHCRFCHDLGDLLCCETC  362 (1414)
T ss_pred             HHHHHHHHHHHHhcc-----ccee------------------------------------ecccccccCcccceeecccC
Confidence            999999999999642     2222                                    25899999999999999999


Q ss_pred             CCcccccccCCC--CCCCCCccccccccCCCCCCcc----C--CCccccccccccCCCCcEEEEecCeEEEeecCCCCcc
Q 000745          351 PAAYHSKCVGVA--NVPEGDWFCPECALDRHKPWMK----P--RKSLRGAELLGVDPHGRLYFCSCGYLLVSDSCDTELI  422 (1306)
Q Consensus       351 prafHl~CL~p~--~vPeGdW~Cp~C~~~~~~~~~k----~--r~~lrgaEilg~D~~gRky~~~CgrLLvcdsC~ses~  422 (1306)
                      |+.||+.|+.+|  .+|+..|.|-.|...++...+.    .  ....-..+.+|.|++||+||+..++|++|+--  +..
T Consensus       363 prvvhlEcv~hP~~~~~s~~~e~evc~~hkvngvvd~vl~~~K~~~~iR~~~iG~dr~gr~ywfi~rrl~Ie~~d--et~  440 (1414)
T KOG1473|consen  363 PRVVHLECVFHPRFAVPSAFWECEVCNIHKVNGVVDCVLPPSKNVDSIRHTPIGRDRYGRKYWFISRRLRIEGMD--ETL  440 (1414)
T ss_pred             CceEEeeecCCccccCCCccchhhhhhhhccCcccccccChhhcccceeccCCCcCccccchhceeeeeEEecCC--CcE
Confidence            999999999987  4999999999998776654431    1  11122467889999999999999999999843  457


Q ss_pred             ccccc-CCchhHHHHhhccCc------hhHHHHHHHHHHHhcCCCCCCCc-ccccc----cchhhhccc------ccc--
Q 000745          423 LNYYC-RDDLNFVIDVLKSSD------TFYGGIINAICKQWDITVSSNGV-RSNLA----LNTVSLSRH------MKA--  482 (1306)
Q Consensus       423 ~~YY~-~~dL~~vL~~L~s~~------~~y~~I~~~I~~~w~ip~~l~~~-~s~~~----~n~~~~~~~------~~~--  482 (1306)
                      ++||+ ..+|..+|+.|+...      ..-.+..++|.+||++|+.++.. |-..+    .-..+|+..      +..  
T Consensus       441 l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~rqM~lT~~ltne~R~~~~f~~~~h~r~~l~~~c~~~lv~~iq  520 (1414)
T KOG1473|consen  441 LWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEIIRQMGLTEELTNELRGAVDFGEDPHGRLFLGRDCAVLLVLCIQ  520 (1414)
T ss_pred             EEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHHHHhccchhhhhhhhhcccccccCCCcceeeecchhhHHhhhhh
Confidence            99999 589999999999521      22335569999999999998665 21111    111122211      000  


Q ss_pred             -----CCCccccchhhhhhhhhhcccccCCCCcccccc----ccccccccc----ccCCccCCCCccchhc-ccCCCcCc
Q 000745          483 -----EVPTISEIDNEQKLEENFLAGYSNRPDNALSKS----ANLLDSVTA----MELPNISSEGSAETTQ-MNSGFDNF  548 (1306)
Q Consensus       483 -----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~----~~~~~~~~~----~~~~~~~s~~s~~~~~-~~~~~~~~  548 (1306)
                           ..+..+..+..  .+.+.++..+++.. +..+.    .++-|....    +..-.  -++|...-+ .++.++.+
T Consensus       521 ~~~da~l~e~~l~~i~--k~v~~~~S~s~~~e-E~~e~ck~is~~~d~p~~n~~~~~e~~--~dqtf~~y~ys~n~vse~  595 (1414)
T KOG1473|consen  521 VVEDAILKEENLGDID--KVVLVLISASAHQE-EYVEICKAISQYWDLPEGNLWRLREEG--NDQTFMKYYYSGNEVSEI  595 (1414)
T ss_pred             hhhhhhhhHhhhcchH--hhhhhhhhcccchH-HHHHHHHHHhhcccccccchhhhhhcc--cccchhhhcccCCchhhc
Confidence                 01111100000  11122222222221 00000    000000000    00000  000000000 00001000


Q ss_pred             ccCCCCC----ccchhcccccccccCCCCCCCCCCCCccchhhhccccCCC---CCCCCCCCCCCCccccccchhhhh--
Q 000745          549 QKEGPDN----SIRAAEFSNQSEIAGKLPAPGHNSMTSSTSDIKQKFASSG---CNSSPTNSRKGDALQLQPEIAYMN--  619 (1306)
Q Consensus       549 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Y~N--  619 (1306)
                      ..--+..    +.+.-.|+-   +.|...+.+.|-...++.+-....+.-+   +.++.             |++|||  
T Consensus       596 ~~~d~e~~dkk~~~~tkf~l---~~nsd~~~~g~~~t~gt~~~~~~~~~~t~~~~lSni-------------P~s~~n~~  659 (1414)
T KOG1473|consen  596 FLTDSENADKKSHMQTKFAL---ITNSDGVTAGNVTTYGTGSQHKKLIARTLQQGLSNI-------------PISYNNRK  659 (1414)
T ss_pred             cCCchhhhcccccccceecc---cccccceeccccccccchhhcchHHHhhhhhhhccC-------------chHhhhcc
Confidence            0000000    000000000   0000111111111111111111111110   13343             499999  


Q ss_pred             --cccch-hhhHHHHHHhhhccccccccCCC---CchhH----HHHHHHHHHhhccceeeecCCcccccccccccccccc
Q 000745          620 --RYSFA-QTASSVAEELMHKSSNEISKEPI---NSNEE----IISKQMKAILKKWDKFYWPNTQKLNADTQKEKCGWCF  689 (1306)
Q Consensus       620 --~Y~~g-~~aasaA~~l~~~sse~~~~~~~---~~~~~----~~~~q~Kafs~~~~~f~wps~~kk~~ev~rerCGWC~  689 (1306)
                        +|..| +.|+|||+.++.+++ ++.+...   ++..+    ++..|+|+||.+|++||||+..+|  +..|||||||+
T Consensus       660 w~~~tkg~~lavs~A~~~~el~s-~t~~~d~s~~~~~~~~~ssn~L~qtklesitaa~f~~~~~~~K--ri~rer~~~~~  736 (1414)
T KOG1473|consen  660 WPVYTKGFELAVSAAADLAELSS-ETLEPDLSKRSNAFKAASSNILGQTKLESITAAQFFWPSPDKK--RITRERCGWCE  736 (1414)
T ss_pred             chhhccchhhhhhccchHHHHHH-hhcccchhhhhhhhccchhhhhcchhheeeehhhhccCCcccc--cccccccchhh
Confidence              99999 999999999999999 5665531   33333    578999999999999999999999  99999999999


Q ss_pred             ccccCCCC-CCeeeeeccccccCcchhhhccccccccCCCchHHHHHHHHhhHhhhcccccccCCChhhhHHHHHHHHhh
Q 000745          690 SCKSATDD-MDCLFYMNNGRVLGSSESEVAGLLSKRNKKGHLVDVICHILSIEDRLLGLLLGPWLNPHYTKLWRKSALKA  768 (1306)
Q Consensus       690 sCk~s~~~-~~C~ln~a~~~~~k~~~~~~~gl~~~kn~~~hl~~i~~yil~mEe~L~GLl~Gp~~~~~~r~~Wrk~~~~A  768 (1306)
                      +|+..... ++||++.+...|+||+|.+.+||.|.+|.++.+.+|++|++++||+++|++|||++...-|++||+.|+. 
T Consensus       737 ~~~l~~~s~k~~~~~~~~~gaqKGa~~r~~G~~~l~n~~~vlS~~~~~~~~~~es~~~v~v~~~~~Esnr~~~r~~L~~-  815 (1414)
T KOG1473|consen  737 SCRLTFASRKGTMLLAAVIGAQKGAMYRNSGLFPLKNWEWVLSSIAAYWLALEESPRGVIVGEFKSESNRKQERKELLV-  815 (1414)
T ss_pred             hcceeeehhccccchhhccccccccceeeeccccccChhHHHHHHHHHHHhhhccccceeecccccccchhhHHHHhhh-
Confidence            99998855 9999999999999999999999999999999999999999999999999999999999999999999987 


Q ss_pred             hhhhhHHHHHHHHHhhhhchhhccccccccCcee-ccccccceeecccccccccCCCCCcCCCCCCCCCcccCCCcceEE
Q 000745          769 ADMASVKHLLLTLEANLQHLALSAEWFKHVDPVV-TVGSASHIVIASSRANSKAGAGRKKARDFDGNPSTKAAGGLSLCW  847 (1306)
Q Consensus       769 s~~~~ik~~LL~LE~nir~~A~s~~W~k~~D~~~-~~~s~~~~~~~s~~~~~k~g~g~rr~r~~~~~~~~~~~~~~~~~W  847 (1306)
                           .+.++++||+||.-+|++-+|.+.||+|. ++.|+.++.+.+.++.|.|+.||++...++ ..++-......|.|
T Consensus       816 -----r~~~~~q~ee~i~~~~~~~y~~~~~~n~~rie~s~~~~ng~~v~akQ~r~pgr~~~s~~~-ek~A~~s~ld~f~~  889 (1414)
T KOG1473|consen  816 -----RRSGGKQLEENICSGALSCYWPKQMDNWLRIEHSIFQSNGVTVGAKQARDPGRTKQSLQA-EKTAPKSDLDSFTW  889 (1414)
T ss_pred             -----hhhhhhhhccccccccccccchhhccCceeeeechhccCceeechhhhcCCcchhhhcch-hhccccccccchhh
Confidence                 38999999999999999999999999998 899999999999999999999999988554 45555677779999


Q ss_pred             ecCCcchhhhhccccCcHHHHHHHHHhcCccccCccccCCCchhhhhhhhhhhhhhhhccccHhHHhHHhhhcccccccc
Q 000745          848 WRGGRLSCQLFSWKRLPRSLVSKAARQAGCMKIPGILYPENSDFARRSRTVAWRAAVESSTSVEQLAIQVREFDSNVRWD  927 (1306)
Q Consensus       848 wrGG~ls~~if~~~~Lp~s~v~KaarQgG~~ki~gi~Y~~~s~~~rRsr~~aWraaVe~s~~~sqLalqvR~Ld~~irW~  927 (1306)
                      ||||+ |+.|+|+|+|-++.++|+|.|+|.+++|+..|-+.+.+|||+++..|.+||+.++|++|||||||   -+++  
T Consensus       890 ~Rggk-s~vvl~kavL~~~~mk~~v~~~g~ta~~k~nfl~~~y~p~~s~~s~wk~av~n~enlh~LAlQ~~---q~v~--  963 (1414)
T KOG1473|consen  890 WRGGK-SKVVLQKAVLSQSIMKKLVWQQGFTAGPKSNFLDWSYIPRRSRRSCWKAAVENSENLHQLALQLR---QNVQ--  963 (1414)
T ss_pred             hhcCc-ceeeehhhhcchHHHHHHhhccccccCCcccccccccccchhhhhhhhhhhcChhhHHHHHHHHH---HHHh--
Confidence            99999 99999999999999999999999999999999999999999999999999999999999999982   2333  


Q ss_pred             cccCCCCCccCchhhhHHHHhhhhcccccccccccceEEEEecCCccccchhhhccccccccccCCCccceeeccCcchh
Q 000745          928 DIENTHPLCTMDKEFRKSVRLFKKAIIRRKCLKEEGVKYLVDFGKRRSVPDIVIRHGSMAEESSSGRKKYWLNESYVPLH 1007 (1306)
Q Consensus       928 ~~~~~~~~~~~~k~~~~~a~~fr~a~i~~K~i~~~~v~Y~~~fg~~k~lP~~v~k~~~~~E~~~~~~~kyW~~E~~vPL~ 1007 (1306)
                                +.|++++.++.||||-||.|++-+++..|+.-|++      +++||.++.         ||+.|..|+| 
T Consensus       964 ----------d~~s~~~r~ai~r~~~ic~~~l~d~~~~~~~~~~s------~~~~~~~~~---------~~~~~~~~sl- 1017 (1414)
T KOG1473|consen  964 ----------DVKSPETRRAIFRNAEICIKKLYDNKEEEGESWLS------SEFSHVISS---------RPQRHEFVSL- 1017 (1414)
T ss_pred             ----------ccCCchhhHHHhhhhhhhccccccCCcccccchhh------hhhhhhhhc---------ccccCceeec-
Confidence                      77999999999999999999999999999999999      888998866         9999999999 


Q ss_pred             hhHhHHhhhhcccCCCCCCCCCCchhhhcccccccccchhhhhccCCCCccccCCCcCCcccCCceecCcccccCccccc
Q 000745         1008 LLKSFEERRVARKSPKLSSGKLSEPFRVIKKSLRDRGFSYLFSKAARSEYYQCGHCSKDVLIRDAVCCQDCKDNYGVSGY 1087 (1306)
Q Consensus      1008 LlkefE~k~~~~~~~~~~~~~~~~~~~~~~K~~~~~~F~yl~~k~~~~~~~~C~~C~kdv~~rd~v~C~~Cq~~~~~~g~ 1087 (1306)
                         .||..+.      .+.-..+.+++.++|.+.-.+|.|.-.+                                    
T Consensus      1018 ---~~~~fr~------~~~~r~~~~q~~~~~~~~~~v~~~~~~~------------------------------------ 1052 (1414)
T KOG1473|consen 1018 ---GYEKFRS------LDNRRATAIQREWLKGSTANVFEIKDYW------------------------------------ 1052 (1414)
T ss_pred             ---cchhhhc------chhhhhHHHHhhhhcccccceeeeeccC------------------------------------
Confidence               3887421      2233456888888888888887765433                                    


Q ss_pred             ccccceeccCccccceeeeEecccccccccccccccccCCcCCCCCCccccccccccccccccccccccCCCcccccCcc
Q 000745         1088 FHKRHIRKSAGAVTTECKYTCYQCQDGRFKKDTRTAKNGTKKGKMNTRSVKVKSQKSKKTTGRRSVQSKNSKKTVVGGRS 1167 (1306)
Q Consensus      1088 ~Hke~~~~s~~~~~~~~~~~C~~C~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~q~~k~~t~~k~~~~K~~kk~~~~~r~ 1167 (1306)
                                                   +               ++                         +.      
T Consensus      1053 -----------------------------~---------------~~-------------------------s~------ 1057 (1414)
T KOG1473|consen 1053 -----------------------------P---------------PS-------------------------QQ------ 1057 (1414)
T ss_pred             -----------------------------C---------------ch-------------------------hh------
Confidence                                         0               00                         11      


Q ss_pred             cccccCccccccccccchhhhhhhhhhccccccCCCCCCCcccccCCCCCccchhhhcccchhhcccccceeccccCCCc
Q 000745         1168 LRSRNDKKVAAIPLRRSARRAKLVSVQNRKHAGRKRGRPKSKKKTSRKPKKTTSLQKKRTQSYYSYWLNGLFLSRKPDDD 1247 (1306)
Q Consensus      1168 ~rs~~~k~~~~~pl~~s~~~~k~~~~~~~~~~~~k~~~~~~K~~~~~~~~~~~~~~K~Rt~~~~~yWl~Gl~w~rk~~dd 1247 (1306)
                      +.|.++....+..                            ||.+.+.++.     |...+...  |  |++|.+++-.|
T Consensus      1058 ~~s~~~~~~~~gv----------------------------kq~tpd~n~~-----~~~~~~~s--~--~v~~~~~~~a~ 1100 (1414)
T KOG1473|consen 1058 LPSEKNNVNYSGV----------------------------KQRTPDGNER-----KSKKKTLS--S--GVIWRKKNYAD 1100 (1414)
T ss_pred             CcccccCCCccce----------------------------eeecCCcchh-----hhccCCcc--c--ccccccccccc
Confidence            2444444333334                            6666665554     11122233  8  99999999999


Q ss_pred             cccccccceeeeccCCCCCCCCCCcccccccccCCCCcceEEecccC
Q 000745         1248 RVMQFTRKNFLAASELLTDTLDQPKCYLCHEAEHTSTSNYIACEICG 1294 (1306)
Q Consensus      1248 r~~~Fr~k~~~~~se~~~~~~~~P~C~LC~~~y~~~~l~YI~CE~C~ 1294 (1306)
                      ++..||+.||+..+. ++.+-.+|+|..|.-+| +++++||+|..|.
T Consensus      1101 t~~~~~~qnii~ag~-~~kp~~~p~~~i~~~p~-~pg~~~i~~~~~~ 1145 (1414)
T KOG1473|consen 1101 TGVPFRHQNIILAGR-SDKPTLSPVCFICTLPY-NPGLTYIHCTVCM 1145 (1414)
T ss_pred             CCCCcchhhHHhccC-CCCCCCCccccceeecc-CCCCCcceEEEee
Confidence            999999999999999 99999999999999999 8899999999998

>smart00571 DDT domain in different transcription and chromosome remodeling factors Back     alignment and domain information
>PF02791 DDT: DDT domain; InterPro: IPR004022 This domain is predicted to be a DNA binding domain Back     alignment and domain information
>KOG4299 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>KOG1512 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function Back     alignment and domain information
>KOG0956 consensus PHD finger protein AF10 [General function prediction only] Back     alignment and domain information
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] Back     alignment and domain information
>COG5141 PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>KOG0954 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>PF15612 WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B 2Y9Y_B Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] Back     alignment and domain information
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>KOG4299 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG1512 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] Back     alignment and domain information
>PLN00163 histone H4; Provisional Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1306
1mm2_A61 Solution Structure Of The 2nd Phd Domain From Mi2b 1e-07
1xwh_A66 Nmr Structure Of The First Phd Finger Of Autoimmune 2e-07
1mm3_A61 Solution Structure Of The 2nd Phd Domain From Mi2b 2e-07
2l5u_A61 Structure Of The First Phd Finger (Phd1) From Chd4 1e-05
2ku3_A71 Solution Structure Of Brd1 Phd1 Finger Length = 71 4e-05
2kft_A56 Nmr Solution Structure Of The First Phd Finger Doma 4e-05
3u5m_A207 Crystal Structure Of Trim33 Phd-Bromo In The Free S 4e-05
2l43_A88 Structural Basis For Histone Code Recognition By Br 6e-05
2puy_A60 Crystal Structure Of The Bhc80 Phd Finger Length = 9e-05
3o33_A184 Crystal Structure Of Trim24 Phd-Bromo In The Free S 1e-04
1weu_A91 Solution Structure Of Phd Domain In Ing1-Like Prote 2e-04
>pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b Length = 61 Back     alignment and structure 
Iteration: 1

 Score = 55.8 bits (133), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 327 ANDWNSDECCLCKMDGSLLCCDGCPAAYHSKCVG--VANVPEGDWFCPEC 374
            +D + + C +CK  G LLCCD CP++YH  C+   +  +P G+W CP C
Sbjct: 4   GSDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRC 53
>pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune Regulator Protein (Aire1): Insights Into Apeced Length = 66 Back     alignment and structure
>pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With C- Terminal Loop Replaced By Corresponding Loop From Wstf Length = 61 Back     alignment and structure
>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b) Length = 61 Back     alignment and structure
>pdb|2KU3|A Chain A, Solution Structure Of Brd1 Phd1 Finger Length = 71 Back     alignment and structure
>pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of Human Autoimmune Regulator (Aire) In Complex With Histone H3(1-20cys) Peptide Length = 56 Back     alignment and structure
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State Length = 207 Back     alignment and structure
>pdb|2L43|A Chain A, Structural Basis For Histone Code Recognition By Brpf2-Phd1 Finger Length = 88 Back     alignment and structure
>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger Length = 60 Back     alignment and structure
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State Length = 184 Back     alignment and structure
>pdb|1WEU|A Chain A, Solution Structure Of Phd Domain In Ing1-Like Protein Bac25009 Length = 91 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1306
1mm2_A61 MI2-beta; PHD, zinc finger, protein scaffold, DNA 7e-21
2yql_A56 PHD finger protein 21A; PHD domain, structural gen 5e-20
1xwh_A66 Autoimmune regulator; PHD domain, Zn binding domai 6e-20
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 2e-19
2puy_A60 PHD finger protein 21A; PHD finger, histone CODE, 1e-17
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 5e-16
1fp0_A88 KAP-1 corepressor; PHD domain, C3HC4 type zinc bin 6e-16
2l43_A88 N-teminal domain from histone H3.3, linker, PHD1 f 7e-16
2ro1_A189 Transcription intermediary factor 1-beta; KAP, TIF 7e-14
2lbm_A142 Transcriptional regulator ATRX; metal binding prot 2e-13
1weu_A91 Inhibitor of growth family, member 4; structural g 2e-13
3ql9_A129 Transcriptional regulator ATRX; zinc finger, trans 4e-13
2e6r_A92 Jumonji/ARID domain-containing protein 1D; PHD dom 5e-13
2g6q_A62 Inhibitor of growth protein 2; protein-peptide com 7e-13
2vnf_A60 ING 4, P29ING4, inhibitor of growth protein 4; ace 8e-13
1x4i_A70 Inhibitor of growth protein 3; structural genomics 2e-12
2jmi_A90 Protein YNG1, ING1 homolog 1; PHD, histone, recogn 3e-11
3o36_A184 Transcription intermediary factor 1-alpha; TRIM24, 4e-11
1f62_A51 Transcription factor WSTF; Zn-finger; NMR {Homo sa 5e-11
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 8e-11
2k16_A75 Transcription initiation factor TFIID subunit 3; p 9e-11
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 1e-10
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 6e-04
1wen_A71 Inhibitor of growth family, member 4; ING1-like pr 1e-10
3c6w_A59 P28ING5, inhibitor of growth protein 5; chromatin, 2e-10
1wev_A88 Riken cDNA 1110020M19; structural genomics, PHD do 3e-10
2e6s_A77 E3 ubiquitin-protein ligase UHRF2; PHD domain, str 4e-10
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
3shb_A77 E3 ubiquitin-protein ligase UHRF1; unmodified hist 8e-10
3u5n_A207 E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b 3e-09
3asl_A70 E3 ubiquitin-protein ligase UHRF1; histone reader 3e-09
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 4e-09
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 2e-08
3ask_A226 E3 ubiquitin-protein ligase UHRF1; histone reader 8e-09
2yt5_A66 Metal-response element-binding transcription facto 2e-08
1we9_A64 PHD finger family protein; structural genomics, PH 6e-08
2xb1_A105 Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; 2e-07
3a1b_A159 DNA (cytosine-5)-methyltransferase 3A, histone H3; 3e-07
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 4e-07
3o70_A68 PHD finger protein 13; PHF13, structural genomics 9e-07
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 1e-06
1wem_A76 Death associated transcription factor 1; structura 1e-06
1wee_A72 PHD finger family protein; structural genomics, PH 2e-06
2pv0_B386 DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, 2e-06
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 2e-06
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 3e-06
1wew_A78 DNA-binding family protein; structural genomics, P 9e-05
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 1e-04
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 2e-04
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Length = 61 Back     alignment and structure
 Score = 86.3 bits (214), Expect = 7e-21
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 326 DANDWNSDECCLCKMDGSLLCCDGCPAAYHSKCVGVA--NVPEGDWFCPECALDRHKP 381
             +D + + C +CK  G LLCCD CP++YH  C+      +P G+W CP C     K 
Sbjct: 3   LGSDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKG 60
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 56 Back     alignment and structure
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Length = 66 Back     alignment and structure
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Length = 61 Back     alignment and structure
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Length = 60 Back     alignment and structure
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Length = 71 Back     alignment and structure
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 88 Back     alignment and structure
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Length = 88 Back     alignment and structure
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Length = 189 Back     alignment and structure
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Length = 142 Back     alignment and structure
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Length = 91 Back     alignment and structure
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A Length = 129 Back     alignment and structure
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 92 Back     alignment and structure
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Length = 62 Back     alignment and structure
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Length = 60 Back     alignment and structure
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Length = 90 Back     alignment and structure
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Length = 184 Back     alignment and structure
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 51 Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114 Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112 Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112 Back     alignment and structure
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Length = 71 Back     alignment and structure
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Length = 59 Back     alignment and structure
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Length = 88 Back     alignment and structure
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Length = 77 Back     alignment and structure
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Length = 207 Back     alignment and structure
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Length = 70 Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 Back     alignment and structure
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Length = 226 Back     alignment and structure
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Length = 66 Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 64 Back     alignment and structure
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Length = 105 Back     alignment and structure
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A* Length = 159 Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} Length = 75 Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Length = 68 Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Length = 174 Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Length = 76 Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 72 Back     alignment and structure
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B* Length = 386 Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Length = 52 Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Length = 79 Back     alignment and structure
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 78 Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Length = 52 Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Length = 68 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1306
d1mm2a_61 g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens 1e-14
d1fp0a170 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF- 5e-13
d1we9a_64 g.50.1.2 (A:) PHD finger protein At5g26210 {Thale 8e-11
d1f62a_51 g.50.1.2 (A:) Williams-Beuren syndrome transcripti 1e-10
d1wema_76 g.50.1.2 (A:) Death associated transcription facto 2e-10
d1wesa_71 g.50.1.2 (A:) PHD Inhibitor of growth protein 2, I 3e-10
d1weea_72 g.50.1.2 (A:) PHD finger protein At1g33420 {Thale 3e-10
d1weva_88 g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu 3e-10
d2pnxa151 g.50.1.2 (A:195-245) Inhibitor of growth protein 4 4e-09
d1wepa_79 g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus 1e-07
d1wewa_78 g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c 1e-06
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.3 bits (164), Expect = 1e-14
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 327 ANDWNSDECCLCKMDGSLLCCDGCPAAYHSKCVG--VANVPEGDWFCPECALDRHK 380
            +D + + C +CK  G LLCCD CP++YH  C+   +  +P G+W CP C     K
Sbjct: 4   GSDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALK 59
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 71 Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1306
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 98.81
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 98.77
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 98.05
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 98.04
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 98.02
d2pnxa151 Inhibitor of growth protein 4, Ing4 {Homo sapiens 97.68
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 97.41
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 97.25
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 97.24
d1wema_76 Death associated transcription factor 1, Datf1 (DI 96.96
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 96.68
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 94.83
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 93.29
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 84.51
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 84.21
d1wema_76 Death associated transcription factor 1, Datf1 (DI 81.5
d1wila_89 Hypothetical protein KIAA1045 {Human (Homo sapiens 81.34
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=2.1e-09  Score=80.35  Aligned_cols=53  Identities=40%  Similarity=1.126  Sum_probs=46.2

Q ss_pred             CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCC
Q ss_conf             789888234412468942721798885533433788--99998830643643777
Q 000745          327 ANDWNSDECCLCKMDGSLLCCDGCPAAYHSKCVGVA--NVPEGDWFCPECALDRH  379 (1306)
Q Consensus       327 ~~d~ndD~C~VC~~gGeLLcCD~CprafHl~CL~P~--~vPeG~W~Cp~C~~~~~  379 (1306)
                      ..|.++++|.+|+++|+||+||+|+++||..|++++  .+|+++|+|+.|+....
T Consensus         4 ~~d~~~~~C~~C~~~g~lv~Cd~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~~~   58 (61)
T d1mm2a_           4 GSDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL   58 (61)
T ss_dssp             CSCSSCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred             CCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHCCCCCCCCCCCCEECCCCCCCCC
T ss_conf             8668868986789979588869999607611458885758997689978838456
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure